Citrus Sinensis ID: 013019

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
Protein Sequence
MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGFMK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHcccccHHHHHHHHccccccccccccHHHHHccccccccccccccccccHHHHccccccHHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEEEccccHHHHHHHccccccEEEEEEccccccccHHcHHHHHHHHHHcccEEEEccccccHHccccccccccEEEEcccccccccccEEEEEEEccHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccHHHHHHHccccHHccccccHEEEcccccccccccccccccccccccccEEEEEcccccccccccccEEccEEEEEEEEEccHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEccccccccccHHHHcccEEEEEcccccccccccccEEEEEccHcHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHcc
Coil and Loop (DISEMBL)
mavsscssqkilsfssscssfecrsdpdfsgsarfdkprisaARVIGastasfsgvsslifrfppnfvrqLSTKARRNCSNIGVAQIVAASwsnsvgsgsnsaaataasaapappapveitsgddialvdGLKNVQLEALADLKNeasflssdgslaihagerlgrgivtdaittpvvntsayfFKKTAELIDFKEKRRasfeygrygnpTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVpagghivtttdcyrKTRIFIETVlpkmgitatvidpadmEGLEAALnnnnvslfftesptnpflrcvDVKLVSDLchkkgaivcidgtfatplnQKALSLGADLVLHSAtkfigghndvlagsisgsgkLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFyngtlvgfmk
Flexible Loop (DISEMBL)
mavsscssqkilsfssscssfecrSDPDfsgsarfdkPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGrgivtdaittpvvntsayffkktaelidfkekrrasfeygrygnpttvVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFietvlpkmgITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGFMK
Low Complexity Region (SEG)
MAVsscssqkilsfssscssfecrsDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVaaswsnsvgsgsnsaaataasaapappapvEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVlllfitlllCFYNGTLVGFMK
Disordered region (IsUnstruct)
*****************************************AARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASW*******************************DDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGF**
Disordered Region (DISOPRED)
**************SSSCSSFEC********************************VSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAA**************************************************************DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGFMK
Disordered Region (DISEMBL)
****************************FSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWS**********************APVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGFMK
Disordered Region (DISPRO)
******************************************************GVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN********************************************************SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGFMK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGFMK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	451	2.2.26 [Sep-21-2011]
P55217	563	Cystathionine gamma-synth	yes	no	0.640	0.513	0.852	1e-145
O05394	379	Cystathionine gamma-lyase	yes	no	0.585	0.696	0.354	5e-45
P0C2T9	380	Cystathionine beta-lyase	N/A	no	0.569	0.676	0.381	3e-43
P24601	319	Probable cystathionine ga	no	no	0.580	0.821	0.349	3e-43
A2RM21	380	Cystathionine beta-lyase	yes	no	0.552	0.655	0.382	3e-43
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.552	0.655	0.382	3e-43
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.578	0.686	0.357	2e-42
P56069	380	Cystathionine gamma-synth	yes	no	0.578	0.686	0.357	2e-42
P13254	398	Methionine gamma-lyase OS	no	no	0.607	0.688	0.364	2e-41
P66875	388	Cystathionine gamma-synth	yes	no	0.600	0.698	0.354	4e-40

>sp|P55217|METB_ARATH Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3

 Score =  516 bits (1329), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/291 (85%), Positives = 269/291 (92%), Gaps = 2/291 (0%)

Query: 140 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR 199
           L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR 
Sbjct: 164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRS 221

Query: 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 259
            SFEYGRYGNPTTVV+E+K+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCY
Sbjct: 222 VSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCY 281

Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319
           RKTRIF+E  LPK+GIT TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS
Sbjct: 282 RKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVS 341

Query: 320 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 379
            +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++
Sbjct: 342 KICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSE 401

Query: 380 IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA RMAEILEAHPKV
Sbjct: 402 IRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKV 452

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 8

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  182 bits (462), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 164/285 (57%), Gaps = 21/285 (7%)

Query: 155 SLAIHAG----ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNP 210
           +L IH G    E+ G      A++ P+   S Y   K  +           +EY R  NP
Sbjct: 5   TLMIHGGITGDEKTG------AVSVPIYQVSTYKQPKAGQ--------HTGYEYSRTANP 50

Query: 211 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 270
           T   +E  ++ LE  E+    +SGM+A T +++ L  +G H+V T D Y  T   +  VL
Sbjct: 51  TRTALEALVTELESGEAGYAFSSGMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVL 109

Query: 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
            ++GI +T +D +  E +E A+  N  +++  E+PTNP L+  D+ L++D+  K G ++ 
Sbjct: 110 NRLGIESTFVDTSSREEVEKAIRPNTKAIYI-ETPTNPLLKITDLTLMADIAKKAGVLLI 168

Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGG 389
           +D TF TP  Q+ L+LGAD+VLHSATK++GGH+DV+ G  ++ S +L  ++  + +  GG
Sbjct: 169 VDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNSTGG 228

Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLF 434
            L P  ++L++RG+KTL LR++  +  A ++A  LE HP V  L+
Sbjct: 229 VLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLY 273

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|P0C2T9|METC_LACLC Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/270 (38%), Positives = 159/270 (58%), Gaps = 13/270 (4%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IH G    R   T A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE
Sbjct: 9   IHGGISTDR--TTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEE 58

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
            ++ LEG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI  
Sbjct: 59  LIADLEGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLVDKVLTKTGIIY 117

Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
            ++D +++E L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFAT
Sbjct: 118 DLVDLSNLEDLKAAFKAETKAVYF-ETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFAT 176

Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAA 396
           P  Q+ ++LGAD+VLHSATK++GGH+DV+AG + + S +L  +I  L + +G  L P  +
Sbjct: 177 PYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDS 236

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAEILEA 426
           +L+ RG+KTL  R++  ++ A ++AE LEA
Sbjct: 237 WLVQRGIKTLAPRMEAHSANAQKIAEFLEA 266

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (taxid: 1359)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P24601|METB_HERAU Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 157/275 (57%), Gaps = 13/275 (4%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIHAG+      VT A+  P+  TS Y  +   +           +EY R  NPT   ++
Sbjct: 9   AIHAGQDPES--VTGAVIVPIYQTSTYAQRGVGD--------HTGYEYSRTDNPTRTALQ 58

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
             ++ALE A+  ++ ASG+ AST ++L ++ AG H++   D Y  T    + V+ + G++
Sbjct: 59  TCLAALEEAKHALVFASGLGASTTLML-MLKAGDHVICGDDVYGGTYRLFQRVMTEHGLS 117

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
              ID AD E + AA+  N   L + E+PTNP L+   +  ++ +  + G    +D TFA
Sbjct: 118 FDFIDMADPEAVRAAIKPNT-RLIWLETPTNPLLKLAPIAAITRVAREHGIWTIVDNTFA 176

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNA 395
           +P NQ+ ++LGAD+VLHS TK+IGGH+DV+ G+I + + +L  +++ L +  G    P  
Sbjct: 177 SPYNQRPITLGADMVLHSTTKYIGGHSDVVGGAIMTSNDELYEKLKFLQNAAGAVPGPFD 236

Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            +L++RG+KTL +R++     AL +A+ L  HP V
Sbjct: 237 CWLVLRGVKTLSIRMRDDERNALAIAQFLTEHPGV 271

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Herpetosiphon aurantiacus (taxid: 65)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/264 (38%), Positives = 159/264 (60%), Gaps = 15/264 (5%)

Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
           GI TD    A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE ++ L
Sbjct: 12  GISTDKTTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEELIADL 63

Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
           EG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D 
Sbjct: 64  EGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDL 122

Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
           ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+
Sbjct: 123 SNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQ 181

Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401
            ++LGAD+VLHSATK++GGH+DV+AG + + S +L ++I  L + +G  L P  ++L+ R
Sbjct: 182 PIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQR 241

Query: 402 GMKTLHLRVQQQNSTALRMAEILE 425
           G+KTL LR++  ++ A ++AE LE
Sbjct: 242 GIKTLALRMEAHSANAQKIAEFLE 265

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/264 (38%), Positives = 159/264 (60%), Gaps = 15/264 (5%)

Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
           GI TD    A++ P+  TS Y   K   L   KE     +EY R GNPT   +EE ++ L
Sbjct: 12  GISTDKTTGAVSVPIYQTSTY---KQNGLGQPKE-----YEYSRSGNPTRHALEELIADL 63

Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
           EG       +SG+ A    +L+L  AG HI+   D Y  T   ++ VL K GI   ++D 
Sbjct: 64  EGGVQGFAFSSGL-AGIHAVLSLFSAGDHIILADDVYGGTFRLMDKVLTKTGIIYDLVDL 122

Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
           ++++ L+AA      +++F E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+
Sbjct: 123 SNLDDLKAAFKEETKAIYF-ETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQ 181

Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401
            ++LGAD+VLHSATK++GGH+DV+AG + + S +L ++I  L + +G  L P  ++L+ R
Sbjct: 182 PIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQR 241

Query: 402 GMKTLHLRVQQQNSTALRMAEILE 425
           G+KTL LR++  ++ A ++AE LE
Sbjct: 242 GIKTLALRMEAHSANAQKIAEFLE 265

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/274 (35%), Positives = 150/274 (54%), Gaps = 13/274 (4%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IH G  +     T A++ P+  TS Y                  +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------HHKGYEYSRSGNPTRFALEE 57

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
            ++ LEG       ASG+ A    + +L+ +G H++   D Y  T      VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNKVLVKNGLSC 116

Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAA 396
           P  Q  L LGAD+V+HS TK++GGH+DV+AG ++ + + L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           +L+ RG+KTL LR+Q     AL +AE LE HPKV
Sbjct: 236 WLLQRGIKTLGLRMQAHQKNALCVAEFLEKHPKV 269

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/274 (35%), Positives = 150/274 (54%), Gaps = 13/274 (4%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IH G  +     T A++ P+  TS Y              R   +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDATTGAVSVPIYQTSTYRQDAIG--------RHKGYEYSRSGNPTRFALEE 57

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
            ++ LEG       ASG+ A    + +L+ +G H++   D Y  T      VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLLQSGDHVLLGDDVYGGTFRLFNQVLVKNGLSC 116

Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDISQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAA 396
           P  Q  L LGAD+V HS TK++GGH+DV+AG ++ + + L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           +L+ RG+KTL LR++     AL +AE LE HPKV
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKV 269

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P13254|MEGL_PSEPU Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/277 (36%), Positives = 152/277 (54%), Gaps = 3/277 (1%)

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205

Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265

Query: 410 VQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL 446
           + +  + A  +AE L   P+V L+    L  F   TL
Sbjct: 266 MDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTL 302

Pseudomonas putida (taxid: 303)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|P66875|METB_MYCTU Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=1 SV=1

 Score =  166 bits (420), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/282 (35%), Positives = 150/282 (53%), Gaps = 11/282 (3%)

Query: 150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGN 209
           +S   + AIHAG R      T A+  P+  +S +       L       R  FEY R GN
Sbjct: 11  ISGPATRAIHAGYR--PDPATGAVNVPIYASSTFAQDGVGGL-------RGGFEYARTGN 61

Query: 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV 269
           PT   +E  ++A+E        +SGM+A+   L A++  G H+V   D Y  T   I+ V
Sbjct: 62  PTRAALEASLAAVEEGAFARAFSSGMAATDCALRAMLRPGDHVVIPDDAYGGTFRLIDKV 121

Query: 270 LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 329
             +  +  T +  AD++ + AA+      L + E+PTNP L   D+  +++L   + A V
Sbjct: 122 FTRWDVQYTPVRLADLDAVGAAITPRT-RLIWVETPTNPLLSIADITAIAELGTDRSAKV 180

Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLG 388
            +D TFA+P  Q+ L LGAD+VLHS TK+IGGH+DV+ G+ ++   +L  +   L +  G
Sbjct: 181 LVDNTFASPALQQPLRLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDEEFAFLQNGAG 240

Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
               P  AYL +RG+KTL LR+Q+ +  A  +AE L  HP V
Sbjct: 241 AVPGPFDAYLTMRGLKTLVLRMQRHSENACAVAEFLADHPSV 282

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
350536179	540	cystathionine gamma synthase [Solanum ly	0.933	0.779	0.739	1e-178
8439541	539	cystathionine gamma-synthase isoform 1 [	0.931	0.779	0.737	1e-177
8439543	540	cystathionine gamma-synthase isoform 2 [	0.913	0.762	0.727	1e-175
5804835	545	cystathionine gamma synthase [Fragaria v	0.951	0.787	0.717	1e-174
224141019	532	predicted protein [Populus trichocarpa]	0.929	0.787	0.720	1e-169
296082945	497	unnamed protein product [Vitis vinifera]	0.849	0.770	0.693	1e-167
297828634	564	hypothetical protein ARALYDRAFT_477417 [	0.949	0.758	0.694	1e-167
430736214	534	cystathionine gamma-synthase [Cicer arie	0.904	0.764	0.688	1e-166
225452877	531	PREDICTED: cystathionine gamma-synthase,	0.920	0.781	0.711	1e-165
3202028	548	cystathionine gamma-synthase [Mesembryan	0.915	0.753	0.702	1e-165

>gi|350536179|ref|NP_001234489.1| cystathionine gamma synthase [Solanum lycopersicum] gi|40806079|gb|AAR92031.1| cystathionine gamma synthase [Solanum lycopersicum]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 318/430 (73%), Positives = 362/430 (84%), Gaps = 9/430 (2%)

Query: 13  SFSSSCSSFECRSDPDFSGSARFDKP--RISAARVIGASTASFSGVSSLIFRFPPNFVRQ 70
           S++ +  SFECRS+PDFSGS    K   R S     G++ +   G+SSLI+RFPPNFVRQ
Sbjct: 5   SYARAFPSFECRSEPDFSGSLPHPKAGVRFSGKYNSGSNRSQVYGLSSLIYRFPPNFVRQ 64

Query: 71  LSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAA-SAAPAPPAPVEITSGDD-IAL 128
           LS KARRNCSNIGVAQ+VAASWSN+      + AA A  S+A A    + IT+GD+ +A+
Sbjct: 65  LSIKARRNCSNIGVAQVVAASWSNNQAGPEFTPAANAVDSSASAAVTSIGITTGDEEVAV 124

Query: 129 VDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 184
           V+      +NVQ++    +K  ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 125 VENADCSDQNVQIKGSTGVK-YASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYF 183

Query: 185 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 244
           F KT++LIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST+I+ASGM ASTVM LA
Sbjct: 184 FNKTSDLIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLIVASGMCASTVMFLA 243

Query: 245 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
           LVPAGGHIVTTTDCYRKTR+FIET+LPKMGITATVIDPADM  LE ALN   V LFFTES
Sbjct: 244 LVPAGGHIVTTTDCYRKTRVFIETILPKMGITATVIDPADMGALELALNQKKVDLFFTES 303

Query: 305 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 364
           PTNPFLRCVD++LVS LC +KGA+VCIDGTFATPLNQKAL+LGADLV+HSATKF+GGHND
Sbjct: 304 PTNPFLRCVDIELVSKLCREKGALVCIDGTFATPLNQKALALGADLVVHSATKFLGGHND 363

Query: 365 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 424
           VLAG ISG  KLV+ IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL
Sbjct: 364 VLAGCISGPEKLVSVIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 423

Query: 425 EAHPKVLLLF 434
           EAHPKV  ++
Sbjct: 424 EAHPKVKHVY 433

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439541|gb|AAF74981.1|AF082891_1 cystathionine gamma-synthase isoform 1 [Solanum tuberosum]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 317/430 (73%), Positives = 358/430 (83%), Gaps = 10/430 (2%)

Query: 13  SFSSSCSSFECRSDPDFSGSARFDKP--RISAARVIGASTASFSGVSSLIFRFPPNFVRQ 70
           S++ +  SFECRS+PDFSGS    K   R S     G++ +   G+SSLIFRFPPNFVRQ
Sbjct: 5   SYARAFPSFECRSEPDFSGSLPHPKAGVRFSGKYNSGSNRSQVYGLSSLIFRFPPNFVRQ 64

Query: 71  LSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAA-SAAPAPPAPVEITSGDD-IAL 128
           LS KARRNCSNIGVAQ+VAASWSN+      + AA A  S+A A    + IT+GD+ +A+
Sbjct: 65  LSIKARRNCSNIGVAQVVAASWSNNQAGPEFTPAANAVDSSASAAVTSIGITAGDEEVAV 124

Query: 129 VDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYF 184
           V+      +NVQ+         ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYF
Sbjct: 125 VENADCNDQNVQITGTG--VKYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYF 182

Query: 185 FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLA 244
           F KT++LIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST+I+ASGM ASTVM LA
Sbjct: 183 FNKTSDLIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLIVASGMCASTVMFLA 242

Query: 245 LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTES 304
           LVPAGGHIVTTTDCYRKTR+FIET+LPKMGITATVIDPADM  LE  LN   V LFFTES
Sbjct: 243 LVPAGGHIVTTTDCYRKTRVFIETILPKMGITATVIDPADMGALELTLNQKKVDLFFTES 302

Query: 305 PTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND 364
           PTNPFLRCVD++LVS LC +KGA+VCIDGTFATPLNQKAL+LGADLV+HSATKF+GGHND
Sbjct: 303 PTNPFLRCVDIELVSKLCREKGALVCIDGTFATPLNQKALALGADLVVHSATKFLGGHND 362

Query: 365 VLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 424
           VLAG ISG  KLV+ IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL
Sbjct: 363 VLAGCISGPEKLVSVIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 422

Query: 425 EAHPKVLLLF 434
           EAHPKV  ++
Sbjct: 423 EAHPKVKHVY 432

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8439543|gb|AAF74982.1|AF082892_1 cystathionine gamma-synthase isoform 2 [Solanum tuberosum]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 309/425 (72%), Positives = 355/425 (83%), Gaps = 13/425 (3%)

Query: 20  SFECRSDPDFSGSA-RFDKP----RISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTK 74
           SF+CRSDPDFSG   R D P    R S      +  +S  G+SSLI RFPPNFVRQLS K
Sbjct: 12  SFQCRSDPDFSGGVPRHDLPNAGVRFSVKVKSLSRGSSVHGMSSLILRFPPNFVRQLSVK 71

Query: 75  ARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAPVEITSGDDIALV----- 129
           ARRNCSNIG+AQ+VAASWSN+  S   + AA A  AA    AP +IT+GD+   V     
Sbjct: 72  ARRNCSNIGLAQVVAASWSNNHASPDFTPAAKAVDAASI--APFDITTGDEEGAVVEDSP 129

Query: 130 DGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTA 189
              +NVQ+E L D+K  +SFLSSDGS+AIHAGERLGRGIVTDAITTPVVNTSAYFFKKT+
Sbjct: 130 RADRNVQIEDLTDVKY-SSFLSSDGSIAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTS 188

Query: 190 ELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG 249
           +LIDFKEK+RASFEYGRYGNPT++V EEK+SALEGA++T++MASGM ASTV+LLALVPAG
Sbjct: 189 DLIDFKEKKRASFEYGRYGNPTSIVAEEKISALEGADATLLMASGMCASTVLLLALVPAG 248

Query: 250 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF 309
           GHIVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+  LE+ LN   V+LFFTESPTNPF
Sbjct: 249 GHIVTTTDCYRKTRIFIETILPKMGITATVIDPADIGALESVLNQKKVTLFFTESPTNPF 308

Query: 310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS 369
           LRCVD++LVS LCH+KGA+VCIDGTFATPLNQK L+LGADLV+HSATK++GGHNDVL G 
Sbjct: 309 LRCVDIELVSKLCHEKGALVCIDGTFATPLNQKVLALGADLVVHSATKYLGGHNDVLGGC 368

Query: 370 ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPK 429
           ISG  KLV+ +R LHH+LGGA+NPNAAYLIIRGMKTLHLRVQQQNSTA R+AEILEAHPK
Sbjct: 369 ISGPDKLVSAVRTLHHILGGAINPNAAYLIIRGMKTLHLRVQQQNSTAQRIAEILEAHPK 428

Query: 430 VLLLF 434
           V  ++
Sbjct: 429 VRCVY 433

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5804835|emb|CAA04772.2| cystathionine gamma synthase [Fragaria vesca] gi|6012969|emb|CAB57356.1| cystathionine gamma synthase [Fragaria vesca]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 318/443 (71%), Positives = 367/443 (82%), Gaps = 14/443 (3%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFD-KPRISAARVIGASTASFSGVSSL 59
           M V +C   ++ + SSS S++ CR  PD +  A  + +P  +A RV   S A F G+SSL
Sbjct: 1   MGVYTCP--RVFTSSSSSSTYCCRHHPDLATRAAVNPRPGFAAGRV--DSPAPFHGLSSL 56

Query: 60  IFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN---SVGSGSNSAAATAASAAPAPPA 116
           I RFPPNFVRQLSTKARRNCSNIGVAQIVAASWSN    + +   ++A  AA+ A     
Sbjct: 57  ILRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNKDSDLSAVPAASAVDAAATAADLVV 116

Query: 117 PVEITSGDDIALVDGL-----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTD 171
           P +I + DD+A VD         VQL  L DLK +ASFLSSDGS+AIHAGERLGRGIVTD
Sbjct: 117 PAQIGTEDDLAAVDAEYAVFGNGVQLGGLPDLK-DASFLSSDGSIAIHAGERLGRGIVTD 175

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           AITTPVVNTSAYFFKKTA+L+DFKEKR  SFEYGRYGNPTTVV+EEK+SALEGAEST+++
Sbjct: 176 AITTPVVNTSAYFFKKTADLLDFKEKRATSFEYGRYGNPTTVVLEEKISALEGAESTLLL 235

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM ASTV+L+ALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITAT+IDPAD+  LE A
Sbjct: 236 ASGMCASTVLLMALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATIIDPADVGALETA 295

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           LN N VSLFFTESPTNPFLRCVD+ LVSDLCH KGA+VCI+GTFATP+NQKAL+LGADLV
Sbjct: 296 LNENKVSLFFTESPTNPFLRCVDINLVSDLCHSKGAVVCINGTFATPINQKALALGADLV 355

Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQ 411
           +HSATK++ GHNDVLAG ISGS KLV++IR LHH+LGGALNPNAAYLIIRGMKTLH+R+Q
Sbjct: 356 VHSATKYLAGHNDVLAGCISGSMKLVSEIRILHHILGGALNPNAAYLIIRGMKTLHIRIQ 415

Query: 412 QQNSTALRMAEILEAHPKVLLLF 434
           QQNSTALRMA+ILEAHPKV  ++
Sbjct: 416 QQNSTALRMAKILEAHPKVAHVY 438

Source: Fragaria vesca

Species: Fragaria vesca

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141019|ref|XP_002323872.1| predicted protein [Populus trichocarpa] gi|222866874|gb|EEF04005.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 315/437 (72%), Positives = 358/437 (81%), Gaps = 18/437 (4%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKP---RISAARVIGASTASFSGVS 57
           MAVSSC   K+       SSFECRSD     S+  D+P   R ++AR       S +G+S
Sbjct: 1   MAVSSCPCPKLFV----ASSFECRSD----SSSSADQPSQGRSNSARHGTTPFLSGAGMS 52

Query: 58  SLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAP 117
           SLI +FPPNFVRQLSTKARRNCSNIGVAQIVAASWSN+  +G+ SAAA AA+AA      
Sbjct: 53  SLILKFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNNSAAGAPSAAAAAAAAA------ 106

Query: 118 VEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPV 177
              ++         L   +LE L+      SFLSSDGS+A+HAGERLGRGIVTDAITTPV
Sbjct: 107 -AASAIPAAEPAKTLAGNELEDLSSDLEYKSFLSSDGSIAVHAGERLGRGIVTDAITTPV 165

Query: 178 VNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSA 237
           VNTSAYFFKKT ELIDFKEKR AS+EYGRYGNPTT V+E+K+S LEGAEST+I+ASGM A
Sbjct: 166 VNTSAYFFKKTQELIDFKEKRHASYEYGRYGNPTTQVLEDKISELEGAESTLILASGMCA 225

Query: 238 STVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV 297
           STV+LLALVPAGGH+VTTTDCYRKTRIF+ET LPKMGIT TVIDPAD++ LE+AL  N V
Sbjct: 226 STVLLLALVPAGGHLVTTTDCYRKTRIFMETFLPKMGITVTVIDPADVKALESALEINKV 285

Query: 298 SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATK 357
           SLFFTESPTNPFLRCVD++LVS+LCH+KGA+VCIDGTFATPLNQKAL+LGADL+LHSATK
Sbjct: 286 SLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDGTFATPLNQKALALGADLILHSATK 345

Query: 358 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTA 417
           FIGGHNDVL G ISGS K+V++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA
Sbjct: 346 FIGGHNDVLGGCISGSTKVVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTA 405

Query: 418 LRMAEILEAHPKVLLLF 434
           LRMA+ILEAHPKV  ++
Sbjct: 406 LRMAKILEAHPKVRCVY 422

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082945|emb|CBI22246.3| unnamed protein product [Vitis vinifera]

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/441 (69%), Positives = 338/441 (76%), Gaps = 58/441 (13%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTA-------SF 53
           MAVSSC            ++FECRS+PDF G     +   S  R  G +++         
Sbjct: 1   MAVSSCPRVS--------AAFECRSEPDFCGGPHRPEAFASGGRFSGKASSVPSHQIFGA 52

Query: 54  SGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPA 113
           S +SSLIFRFPPNFVRQLSTKARRNCSNIGVAQ+VAAS                      
Sbjct: 53  SALSSLIFRFPPNFVRQLSTKARRNCSNIGVAQVVAASC--------------------- 91

Query: 114 PPAPVEITSGDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAI 173
                               +VQ E LAD K  ASFL  DG+L IHAGERLGRGIVTDAI
Sbjct: 92  --------------------DVQYEDLADEK--ASFLGFDGTLTIHAGERLGRGIVTDAI 129

Query: 174 TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS 233
           TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAESTVIMAS
Sbjct: 130 TTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVIMAS 189

Query: 234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN 293
           GM ASTVMLLALVP GGH+VTTTDCYR+TRIFIET LPK+G+  TVIDPAD E L++AL+
Sbjct: 190 GMCASTVMLLALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKSALD 249

Query: 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLH 353
            NNV+LFFTESPTNPFLRCVD++LVS+LCH+KGA+VCID TFATPLNQK LSLGADLVLH
Sbjct: 250 KNNVTLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADLVLH 309

Query: 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQ 413
           SATK+I GHNDV+AG ISGS KLV+ IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQ
Sbjct: 310 SATKYIAGHNDVIAGCISGSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQQQ 369

Query: 414 NSTALRMAEILEAHPKVLLLF 434
           NSTALRMA+ILEAHPKV  ++
Sbjct: 370 NSTALRMAKILEAHPKVKCVY 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828634|ref|XP_002882199.1| hypothetical protein ARALYDRAFT_477417 [Arabidopsis lyrata subsp. lyrata] gi|297328039|gb|EFH58458.1| hypothetical protein ARALYDRAFT_477417 [Arabidopsis lyrata subsp. lyrata]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 316/455 (69%), Positives = 360/455 (79%), Gaps = 27/455 (5%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGS--ARFDKPRISAARVIGASTASFSGVSS 58
           MAVSS     I S SS  S F+CRSDPD  GS      + R++A   I +S     G+SS
Sbjct: 1   MAVSSFQCPTIFSSSSI-SGFQCRSDPDLVGSPVGGSSRRRVNATAGISSSFTGDGGLSS 59

Query: 59  LIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSG------------------- 99
            I RFPPNFVRQLS KARRNCSNIGVAQIVAA WSN+  SG                   
Sbjct: 60  RILRFPPNFVRQLSIKARRNCSNIGVAQIVAAKWSNNPSSGLPSAAAAAAASSASAVSSA 119

Query: 100 --SNSAAATAASAAPAPPAPVEITSGDDIALV--DGLKNVQLEALADLKNEASFLSSDGS 155
             + +A++ AA+   A P  V + S D+  +V  +G++  ++ ++    ++ SFLSSDGS
Sbjct: 120 ASAATASSAAAAPEAAAPPVVVLKSVDEEVVVAKEGIRE-KIGSVQLTDSKHSFLSSDGS 178

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
           L +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+
Sbjct: 179 LTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVL 238

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           EEK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIF+E  LPK+GI
Sbjct: 239 EEKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGI 298

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
           T TVIDPAD+ GLEAA+N   VSLFFTESPTNPFLRCVD++LVS++CHK+G +VCIDGTF
Sbjct: 299 TVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIELVSEICHKRGTLVCIDGTF 358

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA 395
           ATPLNQKAL+LGADLV+HSATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNA
Sbjct: 359 ATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNA 418

Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           AYLIIRGMKTLHLRVQQQNSTA RMAEILEAHPKV
Sbjct: 419 AYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKV 453

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|430736214|gb|AGA60136.1| cystathionine gamma-synthase [Cicer arietinum]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 292/424 (68%), Positives = 338/424 (79%), Gaps = 16/424 (3%)

Query: 20  SFECRSDPDFSGSARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNC 79
           +FECRSDPDF+    FD  R         S A F   SS I RFPPNF RQLSTKARRNC
Sbjct: 11  TFECRSDPDFASLPSFDNRRTRHFPTAAVSVA-FYAASSPILRFPPNFQRQLSTKARRNC 69

Query: 80  SNIGVAQIVAASWSNSVGSGSNSA---------AATAASAAPAPPAPVEITSGDDIALVD 130
           SNIGVAQIVAASWSN  GSG+ +A         +   A+ AP PP  ++  + +++  VD
Sbjct: 70  SNIGVAQIVAASWSNE-GSGNPAAGAPPVPAVASTVDATTAP-PPLDLDAVADENVVAVD 127

Query: 131 GLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAE 190
               VQ     +  + + FL SD S  IHA ERLGRGIVTD ITTPVVNTSAYFFKKTA+
Sbjct: 128 ENGAVQ----TNRSSYSKFLKSDASKTIHAAERLGRGIVTDGITTPVVNTSAYFFKKTAD 183

Query: 191 LIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG 250
           LIDFKEKR+ S+EYGRYGNPT+ V+EEK+S LEGAESTV+MASGM AS V+L+ALVPAGG
Sbjct: 184 LIDFKEKRQTSYEYGRYGNPTSTVLEEKISELEGAESTVLMASGMCASIVLLMALVPAGG 243

Query: 251 HIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310
           H+VTTTDCYRKTRIFIETVLPKMGIT TV+DPAD+  LE+AL  NNVSLFFTESPTNPFL
Sbjct: 244 HLVTTTDCYRKTRIFIETVLPKMGITTTVVDPADVGALESALEQNNVSLFFTESPTNPFL 303

Query: 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI 370
           RCVD+KLVS+LCHK GA++CIDGTFATPLNQKAL+LGADL++HS TK++GGH+DVL G I
Sbjct: 304 RCVDIKLVSELCHKHGALLCIDGTFATPLNQKALALGADLIMHSCTKYMGGHHDVLGGCI 363

Query: 371 SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           SGS KL++QIR LHH+LGGALNPNAAYL IRGMKTLHLRVQQQNST +RMA++LEAHPKV
Sbjct: 364 SGSDKLISQIRILHHILGGALNPNAAYLFIRGMKTLHLRVQQQNSTGMRMAKLLEAHPKV 423

Query: 431 LLLF 434
             ++
Sbjct: 424 KRVY 427

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452877|ref|XP_002283866.1| PREDICTED: cystathionine gamma-synthase, chloroplastic-like [Vitis vinifera]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 315/443 (71%), Positives = 354/443 (79%), Gaps = 28/443 (6%)

Query: 1   MAVSSCSSQKILSFSSSCSSFECRSDPDFSGSARFDKPRISAARVIGASTA-------SF 53
           MAVSSC            ++FECRS+PDF G     +   S  R  G +++         
Sbjct: 1   MAVSSCPRVS--------AAFECRSEPDFCGGPHRPEAFASGGRFSGKASSVPSHQIFGA 52

Query: 54  SGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPA 113
           S +SSLIFRFPPNFVRQLSTKARRNCSNIGVAQ+VAASWS    + + ++A+ AA+A+  
Sbjct: 53  SALSSLIFRFPPNFVRQLSTKARRNCSNIGVAQVVAASWSADSAAAAAASASAAAAASVE 112

Query: 114 PPAPVEITS--GDDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTD 171
               V +    G D         VQ E LAD K  ASFL  DG+L IHAGERLGRGIVTD
Sbjct: 113 ASVEVSVVESSGSD---------VQYEDLADEK--ASFLGFDGTLTIHAGERLGRGIVTD 161

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAESTVIM
Sbjct: 162 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTVIM 221

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM ASTVMLLALVP GGH+VTTTDCYR+TRIFIET LPK+G+  TVIDPAD E L++A
Sbjct: 222 ASGMCASTVMLLALVPPGGHMVTTTDCYRRTRIFIETFLPKLGVEVTVIDPADTEALKSA 281

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           L+ NNV+LFFTESPTNPFLRCVD++LVS+LCH+KGA+VCID TFATPLNQK LSLGADLV
Sbjct: 282 LDKNNVTLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDSTFATPLNQKTLSLGADLV 341

Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQ 411
           LHSATK+I GHNDV+AG ISGS KLV+ IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQ
Sbjct: 342 LHSATKYIAGHNDVIAGCISGSEKLVSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQ 401

Query: 412 QQNSTALRMAEILEAHPKVLLLF 434
           QQNSTALRMA+ILEAHPKV  ++
Sbjct: 402 QQNSTALRMAKILEAHPKVKCVY 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3202028|gb|AAC19395.1| cystathionine gamma-synthase [Mesembryanthemum crystallinum]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 309/440 (70%), Positives = 352/440 (80%), Gaps = 27/440 (6%)

Query: 13  SFSSSCSS-----FECRSDP-DFSGSARFDKPRISAARVIGASTASFSGVSS-LIFRFPP 65
           + +SSC +     FECR +P DFS +A   +  I  +   GA+   FS  SS LI RFPP
Sbjct: 3   AITSSCCARVLPPFECRPEPADFSTAAAKQEKNIPKSFFGGANGRLFSSSSSSLILRFPP 62

Query: 66  NFVRQLSTKARRNCSNIGVAQIVAASWSNSVGSGSNSAAATAASAAPAPPAP-----VEI 120
           NFVRQLSTKARRNCSNIGVAQ+VAASWSN+  +G+ S     A+ A    A      VEI
Sbjct: 63  NFVRQLSTKARRNCSNIGVAQVVAASWSNNSDAGATSCGGVPAATAVDAAAIAAVDHVEI 122

Query: 121 TSGDDIALVD-----GLK-----NVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVT 170
             G   A+V+     G+K     N     L D +    FLSSDGS+AIHAGERLGRGIVT
Sbjct: 123 DGG---AVVEDSNDGGVKELSSNNSNTLGLGDFR--PPFLSSDGSVAIHAGERLGRGIVT 177

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
           DAITTPVVNTSAYFFKKTA+LIDFKE R+ SFEYGRYGNPT+VV+E+K+SALEGAEST++
Sbjct: 178 DAITTPVVNTSAYFFKKTADLIDFKEGRQTSFEYGRYGNPTSVVLEDKISALEGAESTIL 237

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
           +ASGM AS V++LALVPAGGHIVTTTDCYRKTRIFIET LPKMGITATVIDPAD+EGL++
Sbjct: 238 LASGMCASIVLMLALVPAGGHIVTTTDCYRKTRIFIETFLPKMGITATVIDPADVEGLKS 297

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           AL+ NNV+LFFTESPTNPFLRCVD+KLVS+LCHKKGA+VCIDGTFATPLNQKAL+LGAD 
Sbjct: 298 ALDENNVTLFFTESPTNPFLRCVDIKLVSELCHKKGALVCIDGTFATPLNQKALALGADF 357

Query: 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRV 410
           V+HS TKFIGGHNDVL G ISGS  L++ IR  HHVLGG LNPNAAYL+IRGMKTLHLRV
Sbjct: 358 VVHSMTKFIGGHNDVLGGCISGSKNLISTIRTFHHVLGGTLNPNAAYLMIRGMKTLHLRV 417

Query: 411 QQQNSTALRMAEILEAHPKV 430
           QQQN+TALRMAEILEAHPKV
Sbjct: 418 QQQNTTALRMAEILEAHPKV 437

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
TAIR|locus:2102072	563	MTO1 "METHIONINE OVERACCUMULAT	0.689	0.552	0.800	4.7e-146
TAIR|locus:2006887	412	AT1G33320 [Arabidopsis thalian	0.598	0.655	0.711	1.6e-102
UNIPROTKB|Q4KA19	424	mdeA "Methionine gamma-lyase"	0.629	0.669	0.384	4.7e-48
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.578	0.692	0.379	5.6e-45
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.578	0.692	0.379	5.6e-45
TIGR_CMR|SPO_A0318	400	SPO_A0318 "methionine gamma-ly	0.567	0.64	0.380	1.2e-42
UNIPROTKB|Q8EG02	397	mdeA "Methionine gamma-lyase M	0.627	0.712	0.344	1.5e-42
TIGR_CMR|SO_1812	397	SO_1812 "methionine gamma-lyas	0.627	0.712	0.344	1.5e-42
TIGR_CMR|SPO_1351	396	SPO_1351 "O-succinylhomoserine	0.592	0.674	0.365	2.5e-42
TIGR_CMR|BA_4481	387	BA_4481 "cystathionine beta-ly	0.556	0.648	0.362	5.2e-42

TAIR|locus:2102072 MTO1 "METHIONINE OVERACCUMULATION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1277 (454.6 bits), Expect = 4.7e-146, Sum P(2) = 4.7e-146
 Identities = 253/316 (80%), Positives = 281/316 (88%)

Query:   118 VEITSGDDIALV--DGLKN-VQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAIT 174
             V + S D+  +V  +G++  +    L D K+  SFLSSDGSL +HAGERLGRGIVTDAIT
Sbjct:   139 VVLKSVDEEVVVAEEGIREKIGSVQLTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAIT 196

Query:   175 TPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG 234
             TPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+K+SALEGAEST++MASG
Sbjct:   197 TPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASG 256

Query:   235 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNN 294
             M ASTVMLLALVPAGGHIVTTTDCYRKTRIF+E  LPK+GIT TVIDPAD+ GLEAA+N 
Sbjct:   257 MCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLGITVTVIDPADIAGLEAAVNE 316

Query:   295 NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHS 354
               VSLFFTESPTNPFLRCVD++LVS +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HS
Sbjct:   317 FKVSLFFTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHS 376

Query:   355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
             ATK+IGGHNDVLAG I GS KLV++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQN
Sbjct:   377 ATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQN 436

Query:   415 STALRMAEILEAHPKV 430
             STA RMAEILEAHPKV
Sbjct:   437 STAFRMAEILEAHPKV 452

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IMP

GO:0001887 "selenium compound metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=RCA

GO:0003962 "cystathionine gamma-synthase activity" evidence=ISS;IDA

TAIR|locus:2006887 AT1G33320 [Arabidopsis thaliana (taxid:3702)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 192/270 (71%), Positives = 228/270 (84%)

Query:   161 GERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMS 220
             GERL R + T +ITT VVNT+ YFFK T ELIDFKEKR   +EY RYGNPTT+ +EEK+S
Sbjct:    33 GERLRRDMKTSSITTLVVNTTTYFFKDTTELIDFKEKRIDLYEYARYGNPTTMALEEKIS 92

Query:   221 ALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280
              LEGAEST++MASGM AS VMLLALVP  GHIV T DCY++TRIF+E  L K+GIT T I
Sbjct:    93 VLEGAESTLVMASGMYASNVMLLALVPTNGHIVATKDCYKETRIFMENFLTKLGITVTFI 152

Query:   281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN 340
             D  D+ GL+  +NN+ VSLFFTESPTNPFLRCVD+KLVS +CH++G +VCID T ATP+N
Sbjct:   153 DSDDIAGLQTLVNNHEVSLFFTESPTNPFLRCVDIKLVSKICHRRGTLVCIDATIATPIN 212

Query:   341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII 400
             QK L+LGADLV HSATK+IGGHND LAGSISGS +LV++IRNLH +LGG LNPNAAYL+I
Sbjct:   213 QKTLALGADLVHHSATKYIGGHNDFLAGSISGSMELVSKIRNLHKLLGGTLNPNAAYLLI 272

Query:   401 RGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             RGMKT+HLRV+QQNST ++MA++LEAHPKV
Sbjct:   273 RGMKTMHLRVRQQNSTGMKMAQVLEAHPKV 302

GO:0003824 "catalytic activity" evidence=IEA

GO:0003962 "cystathionine gamma-synthase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q4KA19 mdeA "Methionine gamma-lyase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 111/289 (38%), Positives = 168/289 (58%)

Query:   144 KNEASFLSSDGSLA--IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
             K E + L + G+    +  GE++      +A   P+V ++AY +    +  D    +   
Sbjct:     4 KPERTGLENPGTATRVVWGGEQVRHPY--NATQPPIVASAAYGYDDIDQWYDVALGKAPG 61

Query:   202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
             F Y R  NPT   +E K+  LE AES V  +SGM+A + +L + +  G  +V+T D Y  
Sbjct:    62 FIYSRMSNPTVQTLEAKLQDLENAESAVAFSSGMAAISGVLYSFLRHGQRVVSTKDSYGG 121

Query:   262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             T    E  LP+MG+  T+ +  D + +EA +      L + E+PTNP L+ VD++ +   
Sbjct:   122 TNKIFEEFLPRMGVAVTLCETFDQQQIEAEIAKG-CDLLYLETPTNPTLKIVDIQRLVAA 180

Query:   322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
               + GA+V  D TFATPLNQ  L+LG D+V+HSATKF+ GH DVL G   GS  L++Q+R
Sbjct:   181 AKQVGALVVADNTFATPLNQNPLALGVDVVIHSATKFLSGHGDVLGGVACGSEALMSQVR 240

Query:   382 NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             +   + G +L+P +AYLIIRG+KTL LR++QQ  +A ++A+ L   P V
Sbjct:   241 HYREINGASLDPFSAYLIIRGIKTLALRMRQQQHSAAQLAQFLLNEPLV 289

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 104/274 (37%), Positives = 158/274 (57%)

Query:   158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
             IH G R+G    T ++  P+  TS Y  K+ A        +   +EY R GNPT   +EE
Sbjct:     8 IH-GIRIGEPS-TGSVNVPIYQTSTY--KQEAV------GKHQGYEYSRTGNPTRAALEE 57

Query:   218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
              ++ LE   +     SGM+A T  ++ L   G H++ T D Y  T   I  VL + GI  
Sbjct:    58 MIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRFGIEH 116

Query:   278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
             T +D  ++E +E A+  N  +++  E+PTNP L+  D+K +S L  +KG +  ID TF T
Sbjct:   117 TFVDTTNLEEVEEAIRPNTKAIY-VETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMT 175

Query:   338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAA 396
             P  Q  +SLGAD+VLHSATK++GGH+DV+AG +   S +L   +  + +  GG L P  +
Sbjct:   176 PYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDS 235

Query:   397 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             +L++RG+KTL +R+++  + +  +AE L  HPKV
Sbjct:   236 FLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKV 269

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 104/274 (37%), Positives = 158/274 (57%)

Query:   158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
             IH G R+G    T ++  P+  TS Y  K+ A        +   +EY R GNPT   +EE
Sbjct:     8 IH-GIRIGEPS-TGSVNVPIYQTSTY--KQEAV------GKHQGYEYSRTGNPTRAALEE 57

Query:   218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
              ++ LE   +     SGM+A T  ++ L   G H++ T D Y  T   I  VL + GI  
Sbjct:    58 MIAVLENGHAGFAFGSGMAAITATIM-LFSKGDHVILTDDVYGGTYRVITKVLNRFGIEH 116

Query:   278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
             T +D  ++E +E A+  N  +++  E+PTNP L+  D+K +S L  +KG +  ID TF T
Sbjct:   117 TFVDTTNLEEVEEAIRPNTKAIY-VETPTNPLLKITDIKKISTLAKEKGLLTIIDNTFMT 175

Query:   338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAA 396
             P  Q  +SLGAD+VLHSATK++GGH+DV+AG +   S +L   +  + +  GG L P  +
Sbjct:   176 PYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPQLAEDLHFVQNSTGGILGPQDS 235

Query:   397 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             +L++RG+KTL +R+++  + +  +AE L  HPKV
Sbjct:   236 FLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKV 269

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_A0318 SPO_A0318 "methionine gamma-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 100/263 (38%), Positives = 159/263 (60%)

Query:   172 AITTPVVNTSAYFFKKTAELID--FKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
             A+T P+  TS + F+ TAE     F  +R+    Y R  NPT  ++E++++ LEGAE+ +
Sbjct:    24 ALTPPLHLTSTFAFE-TAEAGGEMFAGERQGHI-YSRISNPTLDLLEQRIATLEGAEAGL 81

Query:   230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 289
              ++SGM A T +L  L+  G  ++     Y  T  ++   L K G+T T +D  D E L+
Sbjct:    82 ALSSGMGAITAVLWTLLSPGDEVIVDKTLYGCTFSYMRHGLAKWGVTITHVDLTDPENLK 141

Query:   290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 349
              A+++    ++F E+P NP +R VD+  VS++ H   A V +D T+ATP   + + +GAD
Sbjct:   142 TAISDKTRVVYF-ETPANPNMRLVDIAAVSEIAHGASASVVVDNTYATPYLTRPIEMGAD 200

Query:   350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLH 407
             +VLHSATK++GGH DV+AG + G  + +++IR   +  + G  + P  A LI+RG+KTL 
Sbjct:   201 IVLHSATKYLGGHGDVVAGLVVGGAEQISEIRLYGMKDMTGAVMAPFNAMLILRGLKTLA 260

Query:   408 LRVQQQNSTALRMAEILEAHPKV 430
             LR+ +  ++A  +AE L AHP V
Sbjct:   261 LRMDRHCASAQVVAEWLAAHPAV 283

GO:0009087 "methionine catabolic process" evidence=ISS

GO:0009093 "cysteine catabolic process" evidence=ISS

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

UNIPROTKB|Q8EG02 mdeA "Methionine gamma-lyase MdeA" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 100/290 (34%), Positives = 165/290 (56%)

Query:   143 LKNEASFLSSDGSLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
             +++++S +    + AIHAG ER   G    ++ TP+  T+ + F    +  +        
Sbjct:     1 MQDKSSKMWKAATQAIHAGHEREAFG----SLVTPLYQTATFVFDSAQQGGERFAGNEPG 56

Query:   202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
             + Y R GNPT   +E KM+ LE AE+    ASGM A +  LLA +  G H+V +   Y  
Sbjct:    57 YIYTRLGNPTVAELERKMAILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGC 116

Query:   262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             T   +     + GI  T++D +D+E +E A+  N   + F E+P NP L+  D+  ++ +
Sbjct:   117 TFALMTNQFARFGIEVTLVDFSDVELIERAIKPNT-KVIFCETPVNPHLQVFDLSAIAAI 175

Query:   322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
               +      +D TF TPL Q+ ++LG D+V+HSATK++ GH DV+AG + GS   + +++
Sbjct:   176 AKRHSLTSIVDNTFMTPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVK 235

Query:   382 -NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
               +   +G  ++P+ A+LI+RG+KTL +R+Q+   +A R+AE LE HP V
Sbjct:   236 YEILKDIGAVMSPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAV 285

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|SO_1812 SO_1812 "methionine gamma-lyase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 100/290 (34%), Positives = 165/290 (56%)

Query:   143 LKNEASFLSSDGSLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
             +++++S +    + AIHAG ER   G    ++ TP+  T+ + F    +  +        
Sbjct:     1 MQDKSSKMWKAATQAIHAGHEREAFG----SLVTPLYQTATFVFDSAQQGGERFAGNEPG 56

Query:   202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
             + Y R GNPT   +E KM+ LE AE+    ASGM A +  LLA +  G H+V +   Y  
Sbjct:    57 YIYTRLGNPTVAELERKMAILERAEAAAATASGMGAVSAALLANLQIGDHLVASNAVYGC 116

Query:   262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             T   +     + GI  T++D +D+E +E A+  N   + F E+P NP L+  D+  ++ +
Sbjct:   117 TFALMTNQFARFGIEVTLVDFSDVELIERAIKPNT-KVIFCETPVNPHLQVFDLSAIAAI 175

Query:   322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
               +      +D TF TPL Q+ ++LG D+V+HSATK++ GH DV+AG + GS   + +++
Sbjct:   176 AKRHSLTSIVDNTFMTPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVK 235

Query:   382 -NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
               +   +G  ++P+ A+LI+RG+KTL +R+Q+   +A R+AE LE HP V
Sbjct:   236 YEILKDIGAVMSPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAV 285

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|SPO_1351 SPO_1351 "O-succinylhomoserine sulfhydrylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 102/279 (36%), Positives = 163/279 (58%)

Query:   157 AIHAGERLGR-GIVTDAITTPVVNTSAYFFKKTAELID--FKEKRRASFEYGRYGNPTTV 213
             A+H G R  + G V++AI      T  + ++ TAE  +  F +     F Y RYGNPT  
Sbjct:    11 AVHGGTRRSQWGEVSEAIFL----TQGFVYE-TAEQAEARFIDCGPDEFIYARYGNPTVA 65

Query:   214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
             + E++++ALEG E     ASGM+A    L++++ AG H+V+    +      +E +L + 
Sbjct:    66 MFEQRIAALEGGEDAFATASGMAAVNGALVSMLKAGDHVVSAKALFGSCLYILENILTRY 125

Query:   274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
             G+  T +D  D+E   AA+     ++FF ES +NP L  +D+  V+++ H  GA V +D 
Sbjct:   126 GVEVTFVDGTDLEQWRAAVRPETKAVFF-ESMSNPTLEVIDITAVAEIAHSVGAKVVVDN 184

Query:   334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV--TQIRNLHHVLGGAL 391
              F+TP+  +A+  GAD+V++SATK I G    L G I GS + +  T    L H  GGAL
Sbjct:   185 VFSTPVFSRAIQQGADVVVYSATKHIDGQGRALGGVIIGSREFIRGTVEPYLKHT-GGAL 243

Query:   392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             +P +A+++++G++T+ LRV  Q  TA ++AE LE HP++
Sbjct:   244 SPFSAWIMLKGLETMALRVNAQAETAQKLAEALEGHPEL 282

GO:0008652 "cellular amino acid biosynthetic process" evidence=ISS

GO:0016835 "carbon-oxygen lyase activity" evidence=ISS

TIGR_CMR|BA_4481 BA_4481 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 95/262 (36%), Positives = 148/262 (56%)

Query:   170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
             T A+  P+ NTS +          F       ++Y R GNPT   +E+ ++ LEG     
Sbjct:    20 TGAVNVPIYNTSTFH--------QFDVDTFGKYDYSRSGNPTREALEDIIALLEGGTKGF 71

Query:   230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 289
               ASG++A +   L L+  G H++ + D Y  T   I  VL + G++ T +D  ++E ++
Sbjct:    72 AFASGIAAISTAFL-LLSQGDHVLISEDVYGGTYRIITEVLSRYGVSHTFVDMTNLEEIK 130

Query:   290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 349
               +  N   LF+ E+P+NP L+  D++ VS L    GA+  +D TF TPL QK L LGAD
Sbjct:   131 QNIKQNT-KLFYVETPSNPLLKVTDIRAVSTLAKSIGALTFVDNTFLTPLFQKPLDLGAD 189

Query:   350 LVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408
             +VLHSATKFI GH+DV AG ++    +L  ++  L +  G  L P    L++RG+KTLH+
Sbjct:   190 VVLHSATKFIAGHSDVTAGLAVVKDAELAQKLGFLQNAFGAILGPQDCSLVLRGLKTLHV 249

Query:   409 RVQQQNSTALRMAEILEAHPKV 430
             R++   + A ++A+ L+ H K+
Sbjct:   250 RLEHSAANANKIAQYLQEHSKI 271

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P55217	METB_ARATH	2, ., 5, ., 1, ., 4, 8	0.8522	0.6407	0.5133	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	451
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	1e-119
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-116
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	2e-98
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	6e-82
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	4e-67
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	5e-65
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	1e-64
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	9e-63
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	1e-62
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	7e-61
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	2e-60
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	3e-60
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	4e-60
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	1e-59
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	1e-58
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	5e-58
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	2e-57
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	3e-57
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	8e-57
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	7e-55
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	1e-54
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	6e-54
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	4e-53
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	3e-52
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	1e-51
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	2e-51
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	5e-51
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	2e-50
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	5e-49
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	2e-48
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	2e-48
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	1e-47
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	1e-45
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	3e-45
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	6e-44
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	7e-44
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	2e-43
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	3e-41
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	8e-41
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	1e-40
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	5e-40
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	3e-38
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	3e-38
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	2e-35
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	3e-31
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	4e-27
COG1921	395	COG1921, SelA, Selenocysteine synthase [seryl-tRNA	2e-06
cd00615	294	cd00615, Orn_deC_like, Ornithine decarboxylase fam	5e-06
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	4e-05
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	6e-05
pfam03841	367	pfam03841, SelA, L-seryl-tRNA selenium transferase	5e-04
PRK06425	332	PRK06425, PRK06425, histidinol-phosphate aminotran	0.001
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	0.002

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  353 bits (908), Expect = e-119
 Identities = 121/278 (43%), Positives = 176/278 (63%), Gaps = 8/278 (2%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LA+HAG+R  R   T A+  P+  TS Y F                ++Y R GNPT   
Sbjct: 2   TLAVHAGQRPDRQ--TGAVVVPIYLTSTYVFDTVE---ALFAGEHGGYDYSRSGNPTRDA 56

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +EE+++ALEG E+ +  +SGM+A    LLAL+ AG H+V T D Y  T    E VLP+ G
Sbjct: 57  LEERIAALEGGEAALAFSSGMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFG 116

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I  T +DP+D++ LEAA+   N    F E+PTNP L+ VD++ ++ +  K GA+V +D T
Sbjct: 117 IEVTFVDPSDLDALEAAI-KPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNT 175

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--SGSGKLVTQIRNLHHVLGGALN 392
           FA+P  Q+ L LGAD+V+HSATK+IGGH+DV+ G +  +G  +L  ++R L +  G  L+
Sbjct: 176 FASPYLQRPLELGADIVVHSATKYIGGHSDVVGGVVVVNGREELAKRLRFLQNATGAVLS 235

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           P  A+L++RG+KTL LR+++    AL++AE LE HPKV
Sbjct: 236 PFDAWLLLRGLKTLGLRMERHQENALKLAEFLEEHPKV 273

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  344 bits (886), Expect = e-116
 Identities = 121/262 (46%), Positives = 175/262 (66%), Gaps = 2/262 (0%)

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
            A+  P+  TS + F   AE  D    R   + Y R GNPT   +E+K++ALEG E+ + 
Sbjct: 1   GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALA 60

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
            +SGM+A + +LLAL+ AG H+V + D Y  T    E +LPK+GI  T +DP D E LEA
Sbjct: 61  FSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEA 120

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           A+      L + ESPTNP L+ VD++ +++L H+ GA++ +D TFATP  Q+ L LGAD+
Sbjct: 121 AI-KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPLELGADI 179

Query: 351 VLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           V+HSATK+IGGH+DV+AG + GSG+ L+ ++R L   LG  L+P  A+L++RG+KTL LR
Sbjct: 180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLR 239

Query: 410 VQQQNSTALRMAEILEAHPKVL 431
           +++ +  AL++AE LE HPKV 
Sbjct: 240 MERHSENALKVAEFLEKHPKVE 261

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  300 bits (770), Expect = 2e-98
 Identities = 110/276 (39%), Positives = 160/276 (57%), Gaps = 4/276 (1%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
            +HAG R      T A+  P+  TS + F    E +D        ++Y R GNPT   +E
Sbjct: 12  LVHAGRRPDDL--TGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALE 69

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           E ++ LEG E     +SGM+A +  LLAL+ AG H++   D Y  T    E +L K G+ 
Sbjct: 70  EALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVE 129

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
            T +DP D E LEAA+   N  L F E+P+NP L   D+  ++ L    GA+V +D TFA
Sbjct: 130 VTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPN 394
           TP+ Q+ L LGAD+V+HSATK++GGH+DVL G +    + + ++         G  L+P 
Sbjct: 190 TPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPF 249

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            A+L++RG++TL LR+++ N  AL++AE L  HPKV
Sbjct: 250 DAWLLLRGLRTLALRMERHNENALKIAEFLADHPKV 285

Length = 396

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  258 bits (660), Expect = 6e-82
 Identities = 114/279 (40%), Positives = 167/279 (59%), Gaps = 5/279 (1%)

Query: 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
            G+ A+ AGE+    +   A   PVV + AY +    E  D    ++    Y R  NPT 
Sbjct: 9   VGTKAVWAGEK--EYLPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTV 66

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLP 271
              EEK+  LEGAE+    ++GM+A +  L   +  G  +V+  D Y  T +IF E  LP
Sbjct: 67  QAFEEKVRILEGAEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTE-FLP 125

Query: 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
           +MG+  T+ +  D E +EA +      L + E+PTNP L+ VD++ ++    K GA+V +
Sbjct: 126 RMGVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVV 184

Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL 391
           D TFATP+NQ  L+LGADLV+HSATKF+ GH D L G + GS +L+ Q+ +   + G  +
Sbjct: 185 DNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM 244

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           +P +AYLI+RGMKTL LRV+QQ  +A+ +A+ L+ HPKV
Sbjct: 245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKV 283

Length = 398

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  218 bits (558), Expect = 4e-67
 Identities = 105/262 (40%), Positives = 154/262 (58%), Gaps = 12/262 (4%)

Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
            T AITTP+  T+AY + +        EK    + Y R  NPT + + +K+  LE AE  
Sbjct: 15  ATGAITTPIYQTTAYHYPE-------GEK----YRYSREANPTVLELTKKIVELENAEMG 63

Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
           V  +SGM A +   LAL+  G  ++   D + ++  F    L   G+     +P     +
Sbjct: 64  VAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNII 123

Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
           E A  +    + F E+ TNP LR VD+  +S +C + G+I+ +D TF+TP+NQK L LGA
Sbjct: 124 EKA-KSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGA 182

Query: 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408
           D+V+HSA+KF+ GHNDV+AG  +G GKL+  I  +   LG +L+P+AAYL +RG+KTL +
Sbjct: 183 DIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLKI 242

Query: 409 RVQQQNSTALRMAEILEAHPKV 430
           R+   N  A ++AE LE HPKV
Sbjct: 243 RMDVINRNAEQIAEFLEGHPKV 264

Length = 376

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  213 bits (545), Expect = 5e-65
 Identities = 104/286 (36%), Positives = 166/286 (58%), Gaps = 17/286 (5%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFE-----YGRYG 208
            + AIH G    +     ++ TP+  TS + F  +AE    +  RR + E     Y R G
Sbjct: 10  ATKAIHGGHIGDKQF--GSLATPIYQTSTFIFD-SAE----QGGRRFAGEESGYIYSRLG 62

Query: 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET 268
           NPT+  VE K++ LEG E+ V+ ASGM A +  L + + AG H+V +   Y  T   +  
Sbjct: 63  NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNH 122

Query: 269 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KG 326
            L + G+  T +D +++E +  AL  N   + + E+P NP L+  D+K +S++ H+  K 
Sbjct: 123 GLTRYGVEVTFVDTSNLEEVRNALKANT-KVVYLETPANPTLKVTDIKAISNIAHENNKE 181

Query: 327 AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLH 384
            +V +D TF TP  Q+ L LGAD+V+HSATK++ GH DV+AG + G  + + Q++   + 
Sbjct: 182 CLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIK 241

Query: 385 HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            + G  + P  A+LIIRGMKTL +R+++    A+++A+ LE+HP V
Sbjct: 242 DMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAV 287

Length = 400

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  214 bits (546), Expect = 1e-64
 Identities = 102/308 (33%), Positives = 156/308 (50%), Gaps = 37/308 (12%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
           LA+HAG+       T A   P+  T++Y F  T         +     Y R  NPTT V+
Sbjct: 11  LAVHAGQE---DPTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVL 67

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           EE+++ALEG  + + +ASG +A T  +L L  AG +IV+++  Y  T       L ++GI
Sbjct: 68  EERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGI 127

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +DP D E  EAA++ N     F E+  NP L  +D++ ++++ H+ G  + +D TF
Sbjct: 128 EVRFVDPDDPENFEAAIDENT-KAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF 186

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------- 376
           ATP   + +  GAD+V+HSATK+IGGH   + G I   GK                    
Sbjct: 187 ATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYH 246

Query: 377 --------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAE 422
                         +     L   LG  L+P  A+L+++G++TL LR+++    AL++AE
Sbjct: 247 GLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAE 306

Query: 423 ILEAHPKV 430
            LE HPKV
Sbjct: 307 FLENHPKV 314

Length = 426

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  207 bits (529), Expect = 9e-63
 Identities = 93/261 (35%), Positives = 146/261 (55%), Gaps = 3/261 (1%)

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
           DA+  P+  TS + F    E+ D     +    Y R  NPT    EE ++ LEGAE    
Sbjct: 24  DAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARG 83

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
            ASGM+A +  +L+ V  G  IV     Y       ET+L +MG+    +D  D E +  
Sbjct: 84  FASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAK 143

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           AL      L + ESPT+      DV  ++ L  + G +  ID ++A+P+ Q+ ++LG DL
Sbjct: 144 AL--PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDL 201

Query: 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNPNAAYLIIRGMKTLHLR 409
           V+HSA+K++GGH+D +AG ++GS + + +I    +  LG  L+P  A+L++RG++TL LR
Sbjct: 202 VIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTLPLR 261

Query: 410 VQQQNSTALRMAEILEAHPKV 430
           ++   ++AL +A  L+AHP V
Sbjct: 262 MKAHEASALEIARRLKAHPVV 282

Length = 389

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  207 bits (527), Expect = 1e-62
 Identities = 108/278 (38%), Positives = 158/278 (56%), Gaps = 7/278 (2%)

Query: 155 SLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
           +LA+  G  R G     +A+      TS Y +   A            F Y RYGNPT  
Sbjct: 2   TLAVRGGMLRSGFEETAEALYL----TSGYVYDSAAVAAKRFAGELPGFVYSRYGNPTVS 57

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
           V EE+++ LEGAE+ V  ASGM+A    L+AL+ AG H+V +   +    +    +LP+ 
Sbjct: 58  VFEERLALLEGAEAAVATASGMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRF 117

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
           G+    +D  D+   EAAL  N     F E+P+NP    VD+  V++L H  GA V +D 
Sbjct: 118 GVQTVFVDGTDLSAWEAALKPNT-KAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDN 176

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHHVLGGALN 392
            FATPL Q+ L LGAD+V++SATK I G   VL G+I GS + + + ++ L    G A++
Sbjct: 177 VFATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEYMDEPVQKLLRHTGPAMS 236

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           P  A+++++G++TL +RVQ QN++AL +AE L  HP V
Sbjct: 237 PFNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSV 274

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  202 bits (517), Expect = 7e-61
 Identities = 99/277 (35%), Positives = 162/277 (58%), Gaps = 6/277 (2%)

Query: 155 SLAIHAG-ERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
           +LA+ AG  R   G  ++A+      TS++ F+  AE             Y R+ NPT  
Sbjct: 9   TLAVRAGQLRSPFGEHSEALFL----TSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVT 64

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
           + +E+++ALEGAE+ V  ASGM+A   +++AL+ AG H+V++   +  T    E +  + 
Sbjct: 65  MFQERLAALEGAEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF 124

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
           GI  T +D  D++   AA+  N   LFF E+P+NP     D+  ++++ H  GA++ +D 
Sbjct: 125 GIETTFVDLTDLDAWRAAVRPNT-KLFFLETPSNPLTELADIAALAEIAHAAGALLVVDN 183

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 393
            F TP  Q+ L LGAD+V+HSATK++ G   VL G++ GS +L+ ++       G  L+P
Sbjct: 184 CFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSP 243

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             A++ ++G++TL LR++  ++ AL +AE LEAHP V
Sbjct: 244 FNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGV 280

Length = 390

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  202 bits (514), Expect = 2e-60
 Identities = 101/276 (36%), Positives = 163/276 (59%), Gaps = 5/276 (1%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIHAG          A+T P+  TS + F    +  +    + + + Y R GNPT   +E
Sbjct: 8   AIHAGYPPKDQF--GALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLE 65

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
            +++ LEG E+ V  +SGM A    LL ++ AG H+++    Y  T   +E  L K GI 
Sbjct: 66  GRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQ 125

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
              I+ A  E ++A + +N   ++F E+P NP ++ +D++ V    H +G  V +D TFA
Sbjct: 126 VDFINMAIPEEVKAHIKDNTKIVYF-ETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPN 394
           TP+    ++LG D+V+HSATK+IGGH DV+AG I G  +L+ QIR   +  + G  ++P 
Sbjct: 185 TPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPF 244

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            A+LI+RG+KTL++R+++ +  A+++AE L++HP V
Sbjct: 245 DAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAV 280

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  201 bits (513), Expect = 3e-60
 Identities = 101/277 (36%), Positives = 154/277 (55%), Gaps = 11/277 (3%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           + AIHAG        T A+  P+  +S +       L       R  +EY R GNPT   
Sbjct: 15  TRAIHAGYEPDP--ATGAVNPPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTA 65

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +EE+++ALEG       +SGM+A+  +L A++  G HIV   D Y  T   I+ V  + G
Sbjct: 66  LEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWG 125

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           +  T +D +D++ + AA+      L + E+PTNP L   D+  +++L H  GA V +D T
Sbjct: 126 VEYTPVDLSDLDAVRAAITPR-TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNP 393
           FA+P  Q+ L+LGAD+V+HS TK+IGGH+DV+ G+ ++   +L      L +  G    P
Sbjct: 185 FASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGP 244

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             AYL +RG+KTL +R+ + +  A  +AE L  HP+V
Sbjct: 245 FDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEV 281

Length = 388

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  200 bits (510), Expect = 4e-60
 Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)

Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
           T A++ P+   S Y  +   +           +EY R GNPT   +EE ++ LEG  +  
Sbjct: 18  TGAVSVPIYQVSTYKQEAVGK--------HQGYEYSRTGNPTRAALEELIAVLEGGHAGF 69

Query: 230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 289
              SGM+A T +++ L  +G H++ T D Y  T   +  VL + GI  T +D +++E +E
Sbjct: 70  AFGSGMAAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVE 128

Query: 290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD 349
            A+  N  +++  E+PTNP L+  D+K +S +  +KG +  +D TF TP  Q  +SLGAD
Sbjct: 129 EAIRPNTKAIYV-ETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGAD 187

Query: 350 LVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL 408
           +VLHSATK++GGH+DV+AG  +  S +L   +  + +  GG L P  ++L++RG+KTL +
Sbjct: 188 IVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI 247

Query: 409 RVQQQNSTALRMAEILEAHPKV 430
           R+++  + +  +AE L  HP V
Sbjct: 248 RMEEHETNSRAIAEFLNNHPAV 269

Length = 377

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  200 bits (511), Expect = 1e-59
 Identities = 101/312 (32%), Positives = 161/312 (51%), Gaps = 43/312 (13%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +L +HAG+       T +   P+  T++Y F  T         + A   Y R  NPTT V
Sbjct: 4   TLQLHAGQEPDP--TTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDV 61

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E++++ALEG  + + +ASG +A T  +L L  AG +IV+++  Y  T    +  L ++G
Sbjct: 62  LEQRIAALEGGVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLG 121

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I    +DP D E  E A++ N  ++F  E+  NP +   D++ ++++ H  G  + +D T
Sbjct: 122 IEVRFVDPDDPEEFEKAIDENTKAVFA-ETIGNPAINVPDIEAIAEVAHAHGVPLIVDNT 180

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------ 376
           FATP   + +  GAD+V+HSATK+IGGH   + G I   GK                   
Sbjct: 181 FATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYH 240

Query: 377 ------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL 418
                             V  +R+    LG AL+P  A+L+++G++TL LR+++    AL
Sbjct: 241 GLVFTETFGNPAFIVKARVQLLRD----LGAALSPFNAFLLLQGLETLSLRMERHVENAL 296

Query: 419 RMAEILEAHPKV 430
           ++AE LEAHPKV
Sbjct: 297 KVAEFLEAHPKV 308

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  197 bits (502), Expect = 1e-58
 Identities = 93/232 (40%), Positives = 138/232 (59%), Gaps = 6/232 (2%)

Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
           F Y RY NPT  + E++M ALEGAE     ASGM+A T  +L  V AG H+V     +  
Sbjct: 57  FIYSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQVKAGDHVVAARALFGS 116

Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
            R  +ET+LP+ GI +T++D  D++  E A+  N   +FF ESPTNP L  +D+  V+ +
Sbjct: 117 CRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNT-KVFFLESPTNPTLEVIDIAAVAKI 175

Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR 381
            ++ GA + +D  FATPL QK L LGA +V++SATK I G    L G +      + +  
Sbjct: 176 ANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEE-- 233

Query: 382 NLHHVL---GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           +L       G +L+P  A+ +++G++TL +RV+QQ  +A  +A+ L  HPKV
Sbjct: 234 HLQDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKV 285

Length = 398

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  194 bits (495), Expect = 5e-58
 Identities = 88/263 (33%), Positives = 146/263 (55%), Gaps = 11/263 (4%)

Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
            T  +  PV  ++AY  +   E           F+Y R GNPT  V+E+ ++ LEG +  
Sbjct: 19  RTGTVNPPVYFSTAYRHEGIGE--------STGFDYSRTGNPTRGVLEQAIADLEGGDQG 70

Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
              +SGM+A  + +++L  +G  ++ ++D Y  T    E    K  +    ++ A ++ +
Sbjct: 71  FACSSGMAAIQL-VMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAI 129

Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
           E A+  N  ++F  E+PTNP ++  D+  ++ +  K G ++ +D TF TP+ Q+ L  GA
Sbjct: 130 EQAITPNTKAIFI-ETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGA 188

Query: 349 DLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
           D+V+HSATK++GGHNDVLAG +   G+ L  ++    +  G  L+P  ++L+IRGMKTL 
Sbjct: 189 DIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA 248

Query: 408 LRVQQQNSTALRMAEILEAHPKV 430
           LR++Q    A  +A  L   P V
Sbjct: 249 LRMRQHEENAKAIAAFLNEQPGV 271

Length = 366

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  193 bits (492), Expect = 2e-57
 Identities = 93/275 (33%), Positives = 144/275 (52%), Gaps = 4/275 (1%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
            IH G          ++T P+  TS + F+   +          S+ Y R GNPT  + E
Sbjct: 10  LIHHGYT--SEEHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFE 67

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           E+M+ LEG E  +   SGM+A +  L+  + AG HI+ +   Y  T  F+E +  K  IT
Sbjct: 68  ERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMIT 127

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
            +  D      +E  +  N   L F E+P NP ++ +D+K V  +  + G +V +D TF 
Sbjct: 128 HSFCDMETEADIENKIRPNTK-LIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFC 186

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNA 395
           +P  Q+ L LG D V+HSATK+IGGH DV+AG      + L  +IR +   +GG + P  
Sbjct: 187 SPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFD 246

Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           A+L++RG+KTL +R+ +    A ++   L+ H  V
Sbjct: 247 AWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAV 281

Length = 386

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  193 bits (493), Expect = 3e-57
 Identities = 97/265 (36%), Positives = 150/265 (56%), Gaps = 3/265 (1%)

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F       +          Y R  NPT  ++E++M++LEG E+ V +
Sbjct: 27  ALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVAL 86

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   L + G+T   +D  D   L+AA
Sbjct: 87  ASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAA 146

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +++    ++F E+P NP +R VD+  V+++ H  GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 ISDKTRMVYF-ETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLV 205

Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSATK++GGH D+ AG + G   L  +IR   L  + G  ++P  A+L++RG+KTL LR
Sbjct: 206 VHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLALR 265

Query: 410 VQQQNSTALRMAEILEAHPKVLLLF 434
           + +  ++A  +AE L  HP V L+ 
Sbjct: 266 MDRHCASAQAVAEWLARHPAVELVH 290

Length = 403

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  192 bits (489), Expect = 8e-57
 Identities = 99/263 (37%), Positives = 147/263 (55%), Gaps = 13/263 (4%)

Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
           T A+  P+ + S      T    DF       ++Y R GNPT   +E+ ++ LEG     
Sbjct: 22  TGAVNVPIYHAS------TFHQFDFDT--FGKYDYSRSGNPTREALEDIIAELEGGTKGF 73

Query: 230 IMASGMSA-STVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
             ASGM+A ST  LL  +  G H++ + D Y  T   I  VL + GI  T +D  ++E +
Sbjct: 74  AFASGMAAISTAFLL--LSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEV 131

Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
              +  N   LF+ E+P+NP L+  D++ V  L    G +  +D TF TPL QK L LGA
Sbjct: 132 AQNIKPNT-KLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGA 190

Query: 349 DLVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
           D+VLHSATKF+ GH+DVLAG ++    +L  ++  L +  G  L     +L++RG+KTLH
Sbjct: 191 DVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTLH 250

Query: 408 LRVQQQNSTALRMAEILEAHPKV 430
           +R++  + TA ++A  L+ HPKV
Sbjct: 251 VRLEHSSETANKIALYLQEHPKV 273

Length = 390

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  186 bits (475), Expect = 7e-55
 Identities = 92/279 (32%), Positives = 144/279 (51%), Gaps = 10/279 (3%)

Query: 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
            G+ A+             ++  P+  T+ +  +  A   D    R    +Y R  NPT 
Sbjct: 3   RGTDAVRGYRGSDP---YGSLQPPIYLTALFRQEGEAYPSD----RGFDLKYSREENPTL 55

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
             +EE ++ LEG    +   SGM+A + +  +L+ AG  +V   + Y  T + +   L K
Sbjct: 56  RPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTT-LRLLKSLEK 114

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
            G+   +  P   E +  A+      L F E+ TNP L+ +DV  V+    + GAI+ +D
Sbjct: 115 FGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVD 173

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGAL 391
            TFATPL  + L  GAD V+HS TK+I GHNDV+ G  ++ SG+ + ++      LG  +
Sbjct: 174 NTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIM 233

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            P  AYL++RG+KTL +R ++Q   A+ +AE L  HPKV
Sbjct: 234 QPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKV 272

Length = 385

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  186 bits (473), Expect = 1e-54
 Identities = 99/274 (36%), Positives = 153/274 (55%), Gaps = 13/274 (4%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IH G  +     T A++ P+  TS Y  ++ A        R   +EY R GNPT   +EE
Sbjct: 8   IHGG--ISEDTTTGAVSVPIYQTSTY--RQDAI------GRPKGYEYSRSGNPTRFALEE 57

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
            ++ LEG       ASG+ A    + +L  +G H++   D Y  T    + VL K G++ 
Sbjct: 58  LIADLEGGVKGFAFASGL-AGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSC 116

Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           T+ID +D+  ++ A+  N  +L+  E+P+NP L+  D+   + +    G +  +D TFAT
Sbjct: 117 TIIDTSDLSQIKKAIKPNTKALYL-ETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175

Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAA 396
           P  Q  L LGAD+V+HS TK++GGH+DV+AG + + +  L  +I    + +GG L P  +
Sbjct: 176 PYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDS 235

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           +L+ RG+KTL LR++     AL +AE LE HPKV
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKV 269

Length = 380

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  184 bits (469), Expect = 6e-54
 Identities = 102/280 (36%), Positives = 149/280 (53%), Gaps = 15/280 (5%)

Query: 157 AIHAGE----RLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTT 212
           A+ +GE    R G       +TTP+  TS + +  + +       R   + Y R+GNPT 
Sbjct: 13  AVQSGELRDPRFGN------VTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTV 66

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
              EEK + LE AE  +  +SGM A T  +L+L+  G  I++ +D Y +T  F   VL  
Sbjct: 67  QAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT 126

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
           +GI    ID   +  L+   + +N  L + ES TNP L+  D+K VS  CH+   IV  D
Sbjct: 127 LGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHENDVIV--D 182

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGGAL 391
            TFA+P NQ  L LGAD+V+HSATK+I GH+DV+ G    + K +   +      LG   
Sbjct: 183 ATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNP 242

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVL 431
           +P  AYL +RG+KTL LR+++ N   + +A  L    K+ 
Sbjct: 243 DPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKIS 282

Length = 384

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  183 bits (465), Expect = 4e-53
 Identities = 95/234 (40%), Positives = 137/234 (58%), Gaps = 10/234 (4%)

Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
           F Y RYGNPT  + EE++  +EGAE+    ASGMSA    L AL+ AG  +V     +  
Sbjct: 62  FVYSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGS 121

Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             +    +LP+ G+    +D  D+   E AL+    ++FF E+P+NP    VD+  VS+L
Sbjct: 122 CFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF-ETPSNPMQSLVDIAAVSEL 180

Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-----GKL 376
            H  GA V +D  FATPL Q+ L LGAD+V++S TK I G   VL G+I G      G +
Sbjct: 181 AHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPV 240

Query: 377 VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
              +R+     G AL+   A+++++G++TL LRV+  N++ALR+AE LE HP V
Sbjct: 241 QKLMRH----TGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAV 290

Length = 403

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  179 bits (457), Expect = 3e-52
 Identities = 86/228 (37%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
           YGR  NPT   +E  +  LEGAE  ++  SGM+A T +L AL+  G  +V   D Y + R
Sbjct: 45  YGRASNPTWRALEAALGELEGAE-ALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVR 103

Query: 264 IFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
                 L  +G+T      A M   EAAL      L   E+P+NP L   D+  ++   H
Sbjct: 104 ALAREYLAPLGVTVREAPTAGM--AEAALAG--ADLVLAETPSNPGLDVCDLAALAAAAH 159

Query: 324 KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRN 382
             GA++ +D T ATPL Q+ L LGADLV+ S TK + GH+D+L G ++G   +L+  +  
Sbjct: 160 AAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER 219

Query: 383 LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
              + G    P  A+L  R + TL LR  +Q + AL +AE+L  HP V
Sbjct: 220 WRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAV 267

Length = 366

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score =  178 bits (454), Expect = 1e-51
 Identities = 84/258 (32%), Positives = 136/258 (52%), Gaps = 5/258 (1%)

Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
           +  PVV+ S   F     +      R   + YG  G PTT  + + + ALEG+  T+++ 
Sbjct: 31  VNPPVVHASTVLFPDAETM----ATRGQKYTYGTRGTPTTDALCKAIDALEGSAGTILVP 86

Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
           SG++A TV  L  +  G H +     Y  TR F +T+L ++G+     DP    G+   L
Sbjct: 87  SGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAK-L 145

Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
              N  +  TE+P +      D+  +++  H+ GAIV +D T+ATPL  + L  G D+ +
Sbjct: 146 MRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISI 205

Query: 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 412
           H+ATK+  GH+D+L G++S + K   Q+   H  LG    P+  Y I+RG++T+ +R++ 
Sbjct: 206 HAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGIRLEH 265

Query: 413 QNSTALRMAEILEAHPKV 430
              +AL +A  LE  P V
Sbjct: 266 HRKSALEIARWLEGRPDV 283

Length = 395

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  178 bits (454), Expect = 2e-51
 Identities = 93/280 (33%), Positives = 143/280 (51%), Gaps = 21/280 (7%)

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEK---RR-------ASFEYGRYGNPTTVVVEEKMSA 221
           A+  PV  TS + F+   +  DF +    R+       A   Y R+ +P + +VE++++ 
Sbjct: 35  AVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAV 94

Query: 222 LEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV-- 279
            EGAES  + +SGMSA    LLA V  G  I+ +   Y  T   +       G+ A    
Sbjct: 95  YEGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFA 154

Query: 280 --IDPADME-GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA------IVC 330
             +  A +    EAA     VSL   E+P NP    VDV  V  +     A      I+ 
Sbjct: 155 DGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIA 214

Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA 390
            D T   P+ QK L  GADL ++S TK++GGH+D++AG++ G   L+ Q+R L   +G  
Sbjct: 215 CDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQ 274

Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           L+P++ +++ R ++TL LR+++ N  A  +AE L  HPKV
Sbjct: 275 LDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKV 314

Length = 427

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  178 bits (452), Expect = 5e-51
 Identities = 102/309 (33%), Positives = 164/309 (53%), Gaps = 36/309 (11%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LAIHAG+ +     + A+  P+  T++Y F+ +    +    +     Y R  NPTT V
Sbjct: 11  TLAIHAGQEIDPTTGSRAV--PIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDV 68

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
            E++++ALEG    + ++SG +A T  +L +  AG  IV+++  Y  T       LPK+G
Sbjct: 69  FEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLG 128

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           IT   +DP+D E  EAA+ +   +L F E+  NP    +D++ V+ + H+ G  + +D T
Sbjct: 129 ITVKFVDPSDPENFEAAITDKTKAL-FAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------------------ 376
           FA+P   + +  GAD+V+HSATKFIGGH   + G I  SGK                   
Sbjct: 188 FASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSY 247

Query: 377 --------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
                         +T+ R  L   LG AL+P  ++L+++G++TLHLR+++ +  AL +A
Sbjct: 248 HGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVA 307

Query: 422 EILEAHPKV 430
           + LE H  V
Sbjct: 308 KFLEEHEAV 316

Length = 431

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  175 bits (445), Expect = 2e-50
 Identities = 88/269 (32%), Positives = 140/269 (52%), Gaps = 14/269 (5%)

Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
           G+ +D     +  P+  ++ Y F        F E R  +++Y R GNPT  ++++ ++ L
Sbjct: 12  GLNSDTQYGCVVPPIYLSTTYNFT------GFNEPR--AYDYSRSGNPTRDLLQQALAEL 63

Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
           EG    V+  +GMSA  ++  AL+     +V   DCY  T   +  +  K       +D 
Sbjct: 64  EGGAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ 123

Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
            D + L AAL      L   E+P+NP LR VD+  +  L    GA+V +D TF +P  Q 
Sbjct: 124 GDEQALRAALAQK-PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQN 182

Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401
            L+LGADLVLHS TK++ GH+DV+AG+ I+   ++  ++    + LG       +YL +R
Sbjct: 183 PLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR 242

Query: 402 GMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           G++TL  R++ Q   A  + E L+  P V
Sbjct: 243 GLRTLVARMRLQQRNAQAIVEYLQTQPLV 271

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  172 bits (438), Expect = 5e-49
 Identities = 105/305 (34%), Positives = 157/305 (51%), Gaps = 35/305 (11%)

Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           IHAG+       T+A   P+  T++Y F  T               Y R  NPT  VVE+
Sbjct: 19  IHAGQ--TPDPATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQ 76

Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           +++ALEG  + +++ASG +A T  +L L  AG HIV++   Y  T       LPK+GI  
Sbjct: 77  RIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV 136

Query: 278 T-VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
           + V DP D++   AA+  N    FF E+ +NP +  +D+  V+++ H+ G  + +D T A
Sbjct: 137 SFVEDPDDLDAWRAAVRPNT-KAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIA 195

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIR---------NLHHV 386
           TP   + L  GAD+V+HSATK++GGH   +AG I   G    TQ R         + H V
Sbjct: 196 TPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGV 255

Query: 387 ---------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILE 425
                                LG A++P  A+LI +G++TL LR+++  + A R+AE LE
Sbjct: 256 VFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLE 315

Query: 426 AHPKV 430
           A  +V
Sbjct: 316 ARDEV 320

Length = 436

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  170 bits (432), Expect = 2e-48
 Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 26/282 (9%)

Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  P+  +  Y ++   +LID  + ++  F Y R G PTT  +E K++ +EG   TV  
Sbjct: 9   AVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCF 68

Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           A+GM+A   + L L+ AG H+V++   +  T     T L  +G+  T++D  D++ + AA
Sbjct: 69  ATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAA 127

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +  N   + F E+  NP  +  D+  +  LC ++G +  +D T  +P   +   +GA LV
Sbjct: 128 IRPNT-RMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDVGASLV 186

Query: 352 LHSATKFIGGHNDVLAGSISGSGKL---------------------VTQIRN--LHHVLG 388
           ++S +K+I GH + L G+++ +G                       +TQIR   L   +G
Sbjct: 187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRD-MG 245

Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             L+  AA+ I  G +TL LRV +  S AL +A+ LEAHPKV
Sbjct: 246 ATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKV 287

Length = 397

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  171 bits (434), Expect = 2e-48
 Identities = 93/309 (30%), Positives = 146/309 (47%), Gaps = 36/309 (11%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LA+HAG        T A   P+  T+++ F+ +          RA   Y R  NPT  V
Sbjct: 11  TLALHAGAA--PDPATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAV 68

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +EE+++ALEG    +  ASG +A  + +  L+ AG HIV ++  Y  +   +   L + G
Sbjct: 69  LEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFG 128

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I  T + P D++G  AA+  N   L F E+  NP L  +D+  V+ + H+ G  + +D T
Sbjct: 129 IETTFVKPGDIDGWRAAIRPNT-RLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--------SGSGK---LVTQIRNL 383
           F TP   +    GADLV HSATKF+GGH   + G +          SGK   L       
Sbjct: 188 FTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGF 247

Query: 384 HHV----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
           H +                       G  L+P  A+ +++G++TL LR+++  +   ++ 
Sbjct: 248 HGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVV 307

Query: 422 EILEAHPKV 430
             L +HP V
Sbjct: 308 AFLASHPAV 316

Length = 433

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score =  167 bits (426), Expect = 1e-47
 Identities = 87/260 (33%), Positives = 137/260 (52%), Gaps = 4/260 (1%)

Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVI 230
           I  PV   S   F   AE+     K RA+ E  YGR G PT    +  +  LEG   T +
Sbjct: 23  INPPVFRASTVVFDTVAEM-RHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL 81

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
             SG +A +  LL+ + AG H++    CY  TR   + +L   GI  T  DP   EG+  
Sbjct: 82  YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRE 141

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
            L   N  + F ESP +  +   DV  +S + H+   +V +D T+A+P+N +   +G D+
Sbjct: 142 -LIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDI 200

Query: 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRV 410
            + +ATK+I GH+DV+ G+ + + K   Q+R   +++G   +P+  YL +RG++TL +R+
Sbjct: 201 SIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRL 260

Query: 411 QQQNSTALRMAEILEAHPKV 430
            Q    AL++A  L   P+V
Sbjct: 261 AQHEKNALKVANWLATRPEV 280

Length = 394

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  162 bits (411), Expect = 1e-45
 Identities = 77/276 (27%), Positives = 136/276 (49%), Gaps = 13/276 (4%)

Query: 158 IHAGE---RLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           IH+G             ++  P+   S   F   A       + +    YGR G  T   
Sbjct: 4   IHSGRQPRFSQG-----SVNPPLQRASTVLFDSHAAQR----RAKGELTYGRRGTLTHFA 54

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +++ M  LEG     +  SG++A T  +LA V AG H++     Y  TR F + VL +MG
Sbjct: 55  LQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMG 114

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           +  T  DP   E + A L   N  + F E+P++      D+  ++      G ++ ID T
Sbjct: 115 VDITYYDPLIGEDI-ATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 394
           +A  L  K L  G D+ + + TK++ GH+D++ G++  + +   Q+R   +++G  ++ +
Sbjct: 174 WAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDAD 233

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            AY  +RG++TL +R++Q   ++L +A+ L   P+V
Sbjct: 234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEV 269

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  161 bits (409), Expect = 3e-45
 Identities = 81/232 (34%), Positives = 132/232 (56%), Gaps = 3/232 (1%)

Query: 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY 259
             ++Y R GNPT   +E  ++ L+ A+     +SGM+A  V +  L+  G  I+   D Y
Sbjct: 37  GPYDYTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDV-ITRLLNNGDEIIAGDDLY 95

Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319
             T   +  V+P+ G+    +D  D++ ++AAL      L   ESPTNP  + VD++ +S
Sbjct: 96  GGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPK-TKLVLLESPTNPLQKIVDIRKIS 154

Query: 320 DLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI-SGSGKLVT 378
           ++ H + A+V +D T  +PL    L LGAD+V HSATKF+ GH+DV+AG +     ++  
Sbjct: 155 EMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAK 214

Query: 379 QIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           ++  L +  G  L P   +L++RG+KTL +R+++Q   A  +A  L  HP+V
Sbjct: 215 KVYFLQNSTGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRV 266

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  158 bits (402), Expect = 6e-44
 Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 37/310 (11%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LAIHAG        T A+  P+  T++Y F  T    D  + +     Y R  NPT  V
Sbjct: 5   TLAIHAG--YSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDV 62

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E++++ALEG    + +ASGM+A T  +  +  AG +IV+    Y  T   +   LP++G
Sbjct: 63  LEQRVAALEGGVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIG 122

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I        D+  LEA ++    ++ F ES  NP    +D++ ++D  H+ G  + +D T
Sbjct: 123 IETRFAAHDDIAALEALIDERTKAV-FCESIGNPAGNIIDIQALADAAHRHGVPLIVDNT 181

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK------------LVTQIRN 382
            ATP+  +    GAD+V+HS TK+IGGH   + G +  SGK            L T   +
Sbjct: 182 VATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPS 241

Query: 383 LHHV----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420
            H V                      +G AL+P  A+LI++G++TL LR+++    AL++
Sbjct: 242 YHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKV 301

Query: 421 AEILEAHPKV 430
           A  L+ HP+V
Sbjct: 302 ARYLQQHPQV 311

Length = 425

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  158 bits (401), Expect = 7e-44
 Identities = 90/252 (35%), Positives = 139/252 (55%), Gaps = 18/252 (7%)

Query: 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC 258
           R  + Y R+ NPT + +  +M+ALEG E+    ASGMSA + +LL L  +GGH+V +   
Sbjct: 65  RDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTL 124

Query: 259 YRKTRIFIETVLP-KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKL 317
           Y  T   +   LP K  IT T +D  D+E ++ A+      + + ES +NP L   D+  
Sbjct: 125 YGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTVADIPE 184

Query: 318 VSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV 377
           ++ + H+KG  V +D TFA P+      LGAD+V+HS +KFI G  D++AG++ G  +LV
Sbjct: 185 LARIAHEKGVTVVVDNTFA-PMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELV 243

Query: 378 TQIRNLHH----VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL----RMAEI------ 423
             + +LHH    +LG  +NP  A+ +   +  L LR+++    A+    RM E+      
Sbjct: 244 NSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGLKVIY 303

Query: 424 --LEAHPKVLLL 433
             LE HP+  LL
Sbjct: 304 PGLEDHPQHALL 315

Length = 418

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  156 bits (396), Expect = 2e-43
 Identities = 90/266 (33%), Positives = 139/266 (52%), Gaps = 16/266 (6%)

Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
           +  P+  +S Y F        F E R  + +Y R GNPT  VV+  ++ LEG    V+  
Sbjct: 23  VVPPIHLSSTYNF------TGFNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74

Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
           +GMSA  ++    +  G  +V   DCY  +    +++  +       +D  D + L AAL
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134

Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
                 L   ESP+NP LR VD+  +  L  + GA+  +D TF +P  Q  L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVL 193

Query: 353 HSATKFIGGHNDVLAGS-ISGSGKLVTQIR---NLHHVLGGALNPNAAYLIIRGMKTLHL 408
           HS TK++ GH+DV+AG  I+    +VT++    N   V GGA +   +YL++RG++TL  
Sbjct: 194 HSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250

Query: 409 RVQQQNSTALRMAEILEAHPKVLLLF 434
           R++     A  + + L+  P V  L+
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLVKKLY 276

Length = 386

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  152 bits (385), Expect = 3e-41
 Identities = 85/261 (32%), Positives = 150/261 (57%), Gaps = 11/261 (4%)

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
           DA++TP+  T+   FK+ + +          ++Y R GNPT   +E  ++ L+ A+    
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
             SGM+A +  +  L+  G  IV   D Y  +   +  V+P+ G+    ++  +++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAA 212

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           A+      L + ESPTNP  +  D++ ++++ H +GA+V +D +  +P+  + L LGAD+
Sbjct: 213 AIGPQT-KLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271

Query: 351 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           V+HSATKFI GH+DV+AG ++  G KL  ++  L +  G  L P   +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331

Query: 410 VQQQNSTALRMAEILEAHPKV 430
           +++Q   A ++A  L +HP+V
Sbjct: 332 IEKQQENARKIAMYLSSHPRV 352

Length = 464

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  150 bits (379), Expect = 8e-41
 Identities = 106/282 (37%), Positives = 155/282 (54%), Gaps = 26/282 (9%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           A+ AG  + R     A+T P+V +S + F        F  KR+  ++Y R GNPT  ++ 
Sbjct: 17  AVRAG--IDRDTAYGAVTPPIVLSSNFSFDG------FGNKRQ--YDYTRSGNPTRDLLG 66

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMG- 274
           E ++ LEG    VI A+GM A  ++L AL+  G  +V   D Y  + R+F    L K G 
Sbjct: 67  EALAELEGGAGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLF--NALAKKGH 124

Query: 275 ---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
              ITA + DP     L  AL  +   L   E+P+NP LR  D++ V +  HK GA+  +
Sbjct: 125 FALITADLTDP---RSLADALAQSP-KLVLIETPSNPLLRITDLRFVIEAAHKVGALTVV 180

Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGA 390
           D TF +P  QK L  GADLVLHS TK+I GH+DV+ G+ ++   +L  Q+    + LG  
Sbjct: 181 DNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT 240

Query: 391 LNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAEILEAHPKV 430
            +P  A+L +RG++TL   LRV Q+N+ A+  A +L+ H  V
Sbjct: 241 GSPFDAFLTLRGLRTLDARLRVHQENADAI--AALLDGHAAV 280

Length = 405

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  148 bits (375), Expect = 1e-40
 Identities = 89/263 (33%), Positives = 143/263 (54%), Gaps = 15/263 (5%)

Query: 170 TDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229
           T A+ TP+       F  T +  +F   +   F+Y R  NPT   +EE ++A+E A+  +
Sbjct: 22  TGALVTPL------HFSTTYQHPEFG--QSTGFDYTRTKNPTRAKLEETLAAIESADYAL 73

Query: 230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPKMGITATVIDPADMEGL 288
             +SGMSA  V+  ++ P G  +V   D Y  + R F +    K G         + E +
Sbjct: 74  ATSSGMSA-IVLAFSVFPVGSKVVAVRDLYGGSFRWFNQQ--EKEGRFHFTYANTEEELI 130

Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
            A     +  + + E+PTNP +   D++ V+ L H KGA V +D TF +P+ Q+ + LGA
Sbjct: 131 AAI--EEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGA 188

Query: 349 DLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH 407
           D+VLHSATK++ GHNDVLAG  ++   +L  ++    +  G  L+P  +YL++RG+KTL 
Sbjct: 189 DIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLS 248

Query: 408 LRVQQQNSTALRMAEILEAHPKV 430
           LR+++  + A  +   L+  P V
Sbjct: 249 LRMERSTANAQEVVAFLKKSPAV 271

Length = 364

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  148 bits (375), Expect = 5e-40
 Identities = 97/316 (30%), Positives = 146/316 (46%), Gaps = 50/316 (15%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFE-----YGRYGNPT 211
           +IHAG+ +     T A   P+  T++Y F  +AE      K+R + E     Y R  NPT
Sbjct: 18  SIHAGQSVDSD--TSARNLPIYQTTSYVFD-SAE----HAKQRFALEDLGPIYSRLTNPT 70

Query: 212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 271
              +E ++++LEG    V  ASG +A T  +L L  AG HIVT+   Y  T       L 
Sbjct: 71  VEALENRIASLEGGVHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLN 130

Query: 272 KMGITAT-VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
           ++GI  T V +P D E  +AA+  N  + FF E+  NP    +D+  V+++ H+    + 
Sbjct: 131 RLGIEVTFVENPDDPESWQAAVQPNTKA-FFGETFANPQADVLDIPAVAEVAHRNQVPLI 189

Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGG 389
           +D T AT    + L LGAD+V+ S TKF  G+   L G +   GK   T  R+   V   
Sbjct: 190 VDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPY 249

Query: 390 ALNPNAAY-----------------------------------LIIRGMKTLHLRVQQQN 414
            + P+ AY                                   +  +G+ TL LR+++ N
Sbjct: 250 FVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHN 309

Query: 415 STALRMAEILEAHPKV 430
             A+++AE L  H KV
Sbjct: 310 ENAIKVAEFLNNHEKV 325

Length = 437

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  142 bits (361), Expect = 3e-38
 Identities = 67/261 (25%), Positives = 129/261 (49%), Gaps = 2/261 (0%)

Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
            +  TPV   S   F   A +     ++   + YG +  PT++ + ++++ +EG    ++
Sbjct: 26  RSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALL 85

Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
             SG++A +++   LV AG  ++   + Y   R   E +    GIT    DP    G+ A
Sbjct: 86  QPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGI-A 144

Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
            L   N  L + E+P +  +   DV  ++     +G +  ID T++  L  K    G D+
Sbjct: 145 DLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDI 204

Query: 351 VLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
            + + TK+  G +DVL G+ I+   +L  +++     LG  ++ +   L++RG+ +L +R
Sbjct: 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVR 264

Query: 410 VQQQNSTALRMAEILEAHPKV 430
           +   + +AL +AE L+A P++
Sbjct: 265 LAAHDRSALEVAEWLKARPEI 285

Length = 394

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  142 bits (360), Expect = 3e-38
 Identities = 81/256 (31%), Positives = 130/256 (50%), Gaps = 16/256 (6%)

Query: 167 GIVTD----AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSAL 222
           GI +D    A+  P+  ++ Y F    E+          ++Y R GNP   ++E+ +S L
Sbjct: 14  GIESDSQYHAVVPPIYLSTNYGFPAFGEV--------PKYDYTRSGNPNRGLLEQTLSEL 65

Query: 223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282
           E  +  V+   G SA  + + AL+     IV   DCY  T     T   K       +D 
Sbjct: 66  ESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125

Query: 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK 342
           +D   L+AAL      L   E+P+NP +R VD+  +       GA+V +D TF TP+ QK
Sbjct: 126 SDAAALDAALAKKP-KLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQK 184

Query: 343 ALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401
            L LGAD V+HS TK+I GH+DV+ G  I+ + +   ++    + +G    P  +Y+ +R
Sbjct: 185 PLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLR 244

Query: 402 GMKTL--HLRVQQQNS 415
           G++TL   +RV ++++
Sbjct: 245 GIRTLGARMRVHEESA 260

Length = 388

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  135 bits (342), Expect = 2e-35
 Identities = 92/314 (29%), Positives = 148/314 (47%), Gaps = 46/314 (14%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFE--YGRYGN 209
           +LA+HAG +      T A  TP+  T+++ F      A L   +      F   Y R  N
Sbjct: 10  TLAVHAGAQ--PDPTTGARATPIYQTTSFVFNDADHAASLFGLQA-----FGNIYTRITN 62

Query: 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV 269
           PT  V+EE+++ALEG  + + +ASG +A  ++   L+  G   +     Y  +       
Sbjct: 63  PTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHA 122

Query: 270 LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 329
               G      D  D    E A+     ++F  ES  NP     D+  ++++ H+ G  +
Sbjct: 123 FKSFGWQVRWADADDPASFERAITPRTKAIFI-ESIANPGGTVTDIAAIAEVAHRAGLPL 181

Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSI--------SGSGK--LVTQ 379
            +D T A+P   + +  GAD+V+HS TKF+GGH + + G I        S SGK  ++++
Sbjct: 182 IVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSE 241

Query: 380 IRNLHHV-----------------------LGGALNPNAAYLIIRGMKTLHLRVQQQNST 416
            R  +H                        LG A++P  A+LI+ G++TL LR+Q+ +  
Sbjct: 242 PRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDN 301

Query: 417 ALRMAEILEAHPKV 430
           AL +AE L+ HPKV
Sbjct: 302 ALAVAEWLKGHPKV 315

Length = 427

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score =  123 bits (310), Expect = 3e-31
 Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 5/238 (2%)

Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
           + RA+ E  YGR G  T   ++E M  LEG     +   G +A    +LA V  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLM 106

Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
           T   Y  T+ F   +L K+G+T T  DP     + A L   N  + F ESP +  +   D
Sbjct: 107 TGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADI-AKLIQPNTKVVFLESPGSITMEVHD 165

Query: 315 VKLVSDLCHKKG--AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
           V  +          A++ ID T+A  +  KAL  G D+ + + TK++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVA 225

Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q   ++L++AE L  HP+V
Sbjct: 226 NARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEV 283

Length = 395

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  112 bits (281), Expect = 4e-27
 Identities = 78/287 (27%), Positives = 128/287 (44%), Gaps = 32/287 (11%)

Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
           P+  ++ Y +  + +L          + Y R GNPT    E+K++ LEG    V  ASG 
Sbjct: 27  PLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQ 86

Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
           +A  + +L +  +G H++ ++  Y  T       L K+GI  T  +P        AL N+
Sbjct: 87  AAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAND 146

Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
              L + ES  NP +  ++ K  SD   +      +D T ATP   +A   GA++++HS 
Sbjct: 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHST 206

Query: 356 TKFIGGHNDVLAGSISGSG----------KLVTQIRNLHHV------------------- 386
           TK+I GH   L G +   G          +LV    + H V                   
Sbjct: 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQL 266

Query: 387 ---LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
               G  ++P  AY+   G++TLHLR+++ +  AL +A+ L  H ++
Sbjct: 267 LRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERI 313

Length = 432

>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 24/162 (14%)

Query: 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----Q 341
             E A+N N   L    S    F   +  + + ++ H+KG  V +D      ++     +
Sbjct: 148 DYELAINENTALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLR 207

Query: 342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----------------LHH 385
           +AL+LGADLV  S  K +GG     AG I G  +L+ ++++                L  
Sbjct: 208 EALALGADLVSFSGDKLLGG---PQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEA 264

Query: 386 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAH 427
            L   L P      +R ++ L    +   + A R+A +    
Sbjct: 265 ALELYLQPEILGERLRTLRLLTQPAEALLAQAGRLAVVELDP 306

Length = 395

>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 22/164 (13%)

Query: 216 EEKMSALEGAESTVIMASGMSAST-VMLLALVPAGGHIVTTTDCYRK----------TRI 264
           +E  +   GA+ T  + +G S+S   ++LA+   G  I+   +C++             +
Sbjct: 65  QELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPV 124

Query: 265 FIET-VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
           +++    P  GI A  I P   +  +A + + +       +PT  +  C +++ + +  H
Sbjct: 125 YLKPERNPYYGI-AGGIPPETFK--KALIEHPDAKAAVITNPT-YYGICYNLRKIVEEAH 180

Query: 324 KKGAIVCID---GT---FATPLNQKALSLGADLVLHSATKFIGG 361
            +G  V +D   G    F   L   A   GAD+V+ S  K +  
Sbjct: 181 HRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPA 224

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 216 EEKMSAL--EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
           EEK++ L   G +  V + SG  A+   LLAL+  G  ++   + +  +R ++   L   
Sbjct: 6   EEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGH-GSRYWVAAELAGA 64

Query: 274 GITATVIDPADMEG-----LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAI 328
                 +D A   G     LE      NV+L      T      V +K +  +  + G +
Sbjct: 65  KPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGIL 124

Query: 329 VCIDGTFATPLNQKALSL----GADLVLHSATKFIGG 361
           + +D   A   +     L    GAD+V  S  K +GG
Sbjct: 125 LLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGG 161

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 39/253 (15%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
           YG  G+PT   +E++++ L G E+ + + SG  A+ + L+A    G  ++    C     
Sbjct: 28  YG--GDPTVNRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVI----CGEPAH 81

Query: 264 IFI-ETVLPKM--GITATVIDPA-----DMEGLEAAL------NNNNVSLFFTESPTNPF 309
           I+  ET       G     +  A     D+E LEAA+      +     L   E+  N  
Sbjct: 82  IYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSA 141

Query: 310 L-RCV---DVKLVSDLCHKKGAIVCIDGT-F---ATPLNQ--KALSLGADLVLHSATKFI 359
             + V   +++ +  +  + G  + +DG      A  L    K ++  AD V  S +K +
Sbjct: 142 GGQVVSLEELREIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGL 201

Query: 360 GGHNDVLAGSI-SGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL---RVQQQNS 415
           G       GS+ +GS   +   R     LGG +   A  L   G++ L     R+ + ++
Sbjct: 202 G----APVGSVLAGSDDFIAYARRQRKYLGGGMR-QAGVLAAAGLRALEEGVARLGRDHA 256

Query: 416 TALRMAEILEAHP 428
           TA R+AE LE   
Sbjct: 257 TARRLAEGLELLR 269

Length = 288

>gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 36/172 (20%)

Query: 289 EAALNNNNVSLFFTESPTNP----FLRCVDVKLVSDLCHKKGAIV--------CID---- 332
           E A+N N   L    + +N     F + V +  +  L  + G  V         +D    
Sbjct: 130 EQAINENTALLMKVHT-SNYRIQGFTKEVSLAELVALGKEHGLPVYYDLGSGSLVDLSQY 188

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---------- 382
           G    P  Q+ L+LG DLV  S  K +GG     AG I G  +L+ +++           
Sbjct: 189 GLPKEPTVQELLALGVDLVSFSGDKLLGG---PQAGIIVGKKELIERLKKNPLKRALRVD 245

Query: 383 ------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHP 428
                 L   L   LNP   Y  I  ++ L   +++  + A R+ ++L+A  
Sbjct: 246 KLTLAALEATLRLYLNPEKLYEKIPTLRLLTQPLKELRAKAERLQKLLKARL 297

Length = 367

>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTF-------ATPLNQ 341
           LNN N  L F  SP NP    +       +S++C KKGA++ ID  F       A     
Sbjct: 118 LNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVL 177

Query: 342 KALSLGADLVLHSATKFIG 360
              S G  ++  S TK +G
Sbjct: 178 LNRSYGNVIIGRSLTKILG 196

Length = 332

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 17/160 (10%)

Query: 215 VEEKMSALEGAEST--VIMASGMSAS--TVM--LLALVPAGGHIVTTTDCYRKTRIFIET 268
             EK++    A S   +I  SG + +   V   L   +  G  I+ T   +    +  + 
Sbjct: 48  AREKVAEFINAPSDEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQE 107

Query: 269 VLPKMGITATVI--DPA---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH 323
           +  + G T  VI  DP    D++ LE  L      +  T   +N       V+ +  L H
Sbjct: 108 LAKRTGATVRVIPVDPNGLLDLDALEKLLTPRTKLVAITHV-SNVTGTVNPVEEIGKLAH 166

Query: 324 KKGAIVCIDGTFA---TPLNQKALSLGADLVLHSATKFIG 360
           + GA+V +D   A    P++ +A  LG D +  S  K  G
Sbjct: 167 EYGALVVVDAAQAVGHRPIDVQA--LGVDFLAFSGHKLYG 204

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	451
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.95
PRK04311	464	selenocysteine synthase; Provisional	99.94
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.92
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.92
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.91
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.91
PRK07324	373	transaminase; Validated	99.9
PRK06207	405	aspartate aminotransferase; Provisional	99.9
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.9
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.89
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.89
PRK05957	389	aspartate aminotransferase; Provisional	99.89
PRK06290	410	aspartate aminotransferase; Provisional	99.88
PLN02721	353	threonine aldolase	99.88
PRK07681	399	aspartate aminotransferase; Provisional	99.88
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.88
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.88
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.88
PRK06348	384	aspartate aminotransferase; Provisional	99.88
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.88
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.88
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.88
PRK05764	393	aspartate aminotransferase; Provisional	99.88
PRK06108	382	aspartate aminotransferase; Provisional	99.87
PRK07179	407	hypothetical protein; Provisional	99.87
PRK08361	391	aspartate aminotransferase; Provisional	99.87
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.87
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.87
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.87
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.87
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.87
PRK12414	384	putative aminotransferase; Provisional	99.87
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.87
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.87
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.87
PRK08960	387	hypothetical protein; Provisional	99.87
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.87
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.87
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.86
PRK08068	389	transaminase; Reviewed	99.86
PRK07682	378	hypothetical protein; Validated	99.86
PRK05942	394	aspartate aminotransferase; Provisional	99.86
PLN02187	462	rooty/superroot1	99.86
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.86
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.86
PLN00175	413	aminotransferase family protein; Provisional	99.86
PRK07337	388	aminotransferase; Validated	99.86
PRK13392	410	5-aminolevulinate synthase; Provisional	99.86
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.86
PLN02483	489	serine palmitoyltransferase	99.86
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.86
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.86
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.86
PRK07550	386	hypothetical protein; Provisional	99.86
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.86
PTZ00433	412	tyrosine aminotransferase; Provisional	99.86
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.86
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.86
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.86
PLN02656	409	tyrosine transaminase	99.85
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.85
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.85
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.85
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.85
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.85
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.85
PRK06225	380	aspartate aminotransferase; Provisional	99.85
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.85
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.85
PRK08912	387	hypothetical protein; Provisional	99.85
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.85
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.85
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.85
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.85
PRK07683	387	aminotransferase A; Validated	99.85
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.85
PLN02368	407	alanine transaminase	99.85
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.85
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.85
PRK10534	333	L-threonine aldolase; Provisional	99.85
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.85
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.85
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.85
PRK09082	386	methionine aminotransferase; Validated	99.85
PRK03321	352	putative aminotransferase; Provisional	99.85
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.84
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.84
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.84
PRK07568	397	aspartate aminotransferase; Provisional	99.84
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.84
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.84
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.84
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.84
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.84
PRK09105	370	putative aminotransferase; Provisional	99.84
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.84
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.84
PRK07777	387	aminotransferase; Validated	99.84
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.84
PRK09148	405	aminotransferase; Validated	99.84
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.84
PRK06107	402	aspartate aminotransferase; Provisional	99.84
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.84
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.84
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.84
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.84
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.83
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.83
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.83
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.83
PRK08363	398	alanine aminotransferase; Validated	99.83
PLN02651	364	cysteine desulfurase	99.83
PRK09265	404	aminotransferase AlaT; Validated	99.83
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.83
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.83
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.83
PRK08175	395	aminotransferase; Validated	99.83
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.83
PRK13393	406	5-aminolevulinate synthase; Provisional	99.82
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.82
PRK09064	407	5-aminolevulinate synthase; Validated	99.82
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.82
PTZ00377	481	alanine aminotransferase; Provisional	99.82
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.82
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.82
PLN02822	481	serine palmitoyltransferase	99.82
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.81
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.81
PRK08636	403	aspartate aminotransferase; Provisional	99.81
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.81
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.81
PRK02948	381	cysteine desulfurase; Provisional	99.81
PRK14012	404	cysteine desulfurase; Provisional	99.81
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.81
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.81
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.81
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.8
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.8
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.8
PRK06836	394	aspartate aminotransferase; Provisional	99.8
PRK06855	433	aminotransferase; Validated	99.8
PRK05839	374	hypothetical protein; Provisional	99.8
PLN02409	401	serine--glyoxylate aminotransaminase	99.79
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.79
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.79
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.79
PRK08354	311	putative aminotransferase; Provisional	99.79
PTZ00376	404	aspartate aminotransferase; Provisional	99.79
PLN02231	534	alanine transaminase	99.79
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.78
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.78
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.78
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.78
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.78
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.78
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.78
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.78
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.78
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.78
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.77
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.77
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.77
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.77
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.76
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.76
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.76
PLN02955	476	8-amino-7-oxononanoate synthase	99.76
PRK07908	349	hypothetical protein; Provisional	99.75
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.75
PLN02397	423	aspartate transaminase	99.75
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.74
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.74
PRK09275	527	aspartate aminotransferase; Provisional	99.73
PLN02672	1082	methionine S-methyltransferase	99.73
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.72
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.72
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.71
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.71
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.71
PLN03032	374	serine decarboxylase; Provisional	99.7
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.7
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.7
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.7
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.7
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.7
PRK02769	380	histidine decarboxylase; Provisional	99.69
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.69
PRK08637	388	hypothetical protein; Provisional	99.67
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.67
PRK02627	396	acetylornithine aminotransferase; Provisional	99.67
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.67
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.66
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.65
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.65
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.65
PRK07505	402	hypothetical protein; Provisional	99.65
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.65
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.65
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.64
PLN02271	586	serine hydroxymethyltransferase	99.64
PRK13237	460	tyrosine phenol-lyase; Provisional	99.63
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.62
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.61
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.6
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.59
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.59
PRK15029	755	arginine decarboxylase; Provisional	99.59
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.58
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.58
PLN02724	805	Molybdenum cofactor sulfurase	99.55
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.55
PRK13578	720	ornithine decarboxylase; Provisional	99.54
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.53
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.53
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.53
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.52
PLN02263	470	serine decarboxylase	99.5
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.49
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.49
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.49
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.48
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.47
PRK05367	954	glycine dehydrogenase; Provisional	99.47
PLN02624	474	ornithine-delta-aminotransferase	99.46
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.45
PRK04260	375	acetylornithine aminotransferase; Provisional	99.45
COG4100	416	Cystathionine beta-lyase family protein involved i	99.43
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.43
PLN02590	539	probable tyrosine decarboxylase	99.42
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.42
PRK03080	378	phosphoserine aminotransferase; Provisional	99.41
PLN02880	490	tyrosine decarboxylase	99.41
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.4
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.39
PLN00144	382	acetylornithine transaminase	99.39
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.39
PRK15400	714	lysine decarboxylase CadA; Provisional	99.39
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.36
PRK05367	954	glycine dehydrogenase; Provisional	99.35
PRK12566	954	glycine dehydrogenase; Provisional	99.35
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.35
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.34
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.34
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.31
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.31
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.3
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.3
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.28
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.28
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.28
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.28
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.28
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.28
PRK12403	460	putative aminotransferase; Provisional	99.26
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.24
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.24
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.23
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.22
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.22
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.21
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.21
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.21
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.21
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.2
PRK07046	453	aminotransferase; Validated	99.2
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.2
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.18
PRK06105	460	aminotransferase; Provisional	99.16
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.16
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.15
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.14
PRK06541	460	hypothetical protein; Provisional	99.14
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.13
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.13
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.13
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.12
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.12
PRK07482	461	hypothetical protein; Provisional	99.1
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.1
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.1
PRK05965	459	hypothetical protein; Provisional	99.09
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.09
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.09
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.09
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.07
PRK07678	451	aminotransferase; Validated	99.07
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.04
PRK07480	456	putative aminotransferase; Validated	99.04
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.04
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.03
PRK06149	972	hypothetical protein; Provisional	99.03
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.03
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.01
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.01
PRK06062	451	hypothetical protein; Provisional	99.01
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.0
PRK07481	449	hypothetical protein; Provisional	99.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.0
PRK07036	466	hypothetical protein; Provisional	98.99
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.97
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.97
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.96
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.95
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.94
COG3844	407	Kynureninase [Amino acid transport and metabolism]	98.94
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.92
PRK12566	954	glycine dehydrogenase; Provisional	98.91
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.9
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	98.9
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.88
PRK07483	443	hypothetical protein; Provisional	98.88
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.87
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.86
PRK06917	447	hypothetical protein; Provisional	98.84
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	98.84
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	98.83
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.8
PRK06148	1013	hypothetical protein; Provisional	98.79
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	98.79
PLN02452	365	phosphoserine transaminase	98.72
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.72
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	98.71
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	98.68
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.65
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	98.61
PRK12462	364	phosphoserine aminotransferase; Provisional	98.59
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.57
PRK08297	443	L-lysine aminotransferase; Provisional	98.49
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	98.47
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.43
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.26
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.19
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	97.94
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	97.83
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.82
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.73
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	97.71
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	97.33
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	97.01
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	96.91
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	96.72
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	96.06
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	96.06
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	95.68
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	90.72
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	89.11
cd02067	119	B12-binding B12 binding domain (B12-BD). This doma	83.87
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	82.35

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-63  Score=507.84  Aligned_cols=295  Identities=39%  Similarity=0.628  Sum_probs=273.7

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      ..+.|+++|.|+..+  ..++++++|||+++||.|++.++..+.+.++..+|.|+|++|||++.||+++++|||++.++.
T Consensus         6 ~~~~T~~v~~g~~~~--~~~gav~~PI~~tStf~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~a   83 (396)
T COG0626           6 LSLTTRLVHAGRRPD--DLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFA   83 (396)
T ss_pred             cccceeeEEcccccc--cCCCcccCCeeeeeeecccChhhhhhhccccccCcccccCCCccHHHHHHHHHHhhCCCcEEE
Confidence            357899999998753  468999999999999999999887666666677899999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      |+|||+||.+++++++++||||++++..|++++.+++.+++++|++++++|..+.+++++++.+.+|++||+|+|+||++
T Consensus        84 fsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l  163 (396)
T COG0626          84 FSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLL  163 (396)
T ss_pred             ecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCccc
Confidence            99999999999999999999999999999999999999999999999999998888888888743499999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHH-HHHHHHHHhH-hhC
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHH-VLG  388 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e-li~~lr~~~~-~~G  388 (451)
                      ++.||++|+++||++|+++||||||++|++|+|+++|+|||++|+|||++||+|+++|+++++.+ +.+++...++ .+|
T Consensus       164 ~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G  243 (396)
T COG0626         164 EVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTG  243 (396)
T ss_pred             ccccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999998887654 5555555555 599


Q ss_pred             CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       389 ~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ..++|++||+++|||+||..||+++++||+++++||++||.|++|+||+|++||+|++.
T Consensus       244 ~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~  302 (396)
T COG0626         244 AVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELA  302 (396)
T ss_pred             CCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999875

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=3e-61  Score=496.46  Aligned_cols=291  Identities=41%  Similarity=0.712  Sum_probs=260.1

Q ss_pred             cccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 013019          154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS  233 (451)
Q Consensus       154 ~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sS  233 (451)
                      +|++||+|+..+. ..+++++||||+|+||.|++.+++ +.+.++..+|.|+|++||++..||++|++++|++.+++++|
T Consensus         1 ~T~~vh~g~~~~~-~~~~~v~~pi~~sstf~~~~~~~~-~~~~~~~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~S   78 (386)
T PF01053_consen    1 ETLLVHAGRDPDE-DQTGAVNPPIYQSSTFVFDSAEEL-DAFAGEEKGYIYSRYGNPTVRALEQRLAALEGGEDALLFSS   78 (386)
T ss_dssp             HHHHHHTTTTGGT-STTTBSS--B---SBBBBSSHHHH-HHHTTSSSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESS
T ss_pred             CcceEeCCCCCCC-CCCCCeeCCccccccCcccchHHH-HhhcCCCCCcceeccccccHHHHHHHHHHhhcccceeeccc
Confidence            4899999987642 368899999999999999999998 77777888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc
Q 013019          234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV  313 (451)
Q Consensus       234 G~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~  313 (451)
                      ||+||.+++++++++||+|++.+..|++++.+++..+.++|+++.++|..|+++|+++++++ |++||+|+|+||++++.
T Consensus        79 GmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~-t~~v~~EspsNP~l~v~  157 (386)
T PF01053_consen   79 GMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPN-TKLVFLESPSNPTLEVP  157 (386)
T ss_dssp             HHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTT-EEEEEEESSBTTTTB--
T ss_pred             hHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhcccc-ceEEEEEcCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999984 99999999999999999


Q ss_pred             cHHHHHHHHHhcC-CEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH--HHHHHHHHHhHhhCCC
Q 013019          314 DVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRNLHHVLGGA  390 (451)
Q Consensus       314 DL~~IaelA~~~g-~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~--eli~~lr~~~~~~G~~  390 (451)
                      ||++|+++||++| +++|||+||++|+.++|+++|+|+|++|+|||++||+|+++|+++.+.  ++.++++..+..+|..
T Consensus       158 Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~  237 (386)
T PF01053_consen  158 DLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGAT  237 (386)
T ss_dssp             -HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B
T ss_pred             cHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCcc
Confidence            9999999999999 999999999999999999999999999999999999999999999765  7888999999999999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++|+++|+++|+|+|+..||+++.+||++|++||++||.|++|+||+|++||++++.
T Consensus       238 ~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~  294 (386)
T PF01053_consen  238 LSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELA  294 (386)
T ss_dssp             --HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHH
T ss_pred             chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeee
Confidence            999999999999999999999999999999999999999999999999999988764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.9e-60  Score=469.80  Aligned_cols=294  Identities=35%  Similarity=0.567  Sum_probs=274.3

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      .+|+|+++|+|+. +  ..+++...|||+|++|.|++.++..+.|..+..++.|+|..|||.+.||++|+.|||+-.++.
T Consensus         6 ~~f~T~~vHag~~-d--~~t~ara~PIyqtTsy~F~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a   82 (426)
T COG2873           6 WGFETLAVHAGQE-D--PTTGARAVPIYQTTSYVFDDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALA   82 (426)
T ss_pred             cCcchhhhcCCCC-C--CCCCceecceeeeeeeecCCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhh
Confidence            4699999999987 3  468999999999999999999999999988888999999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++|||+|+..++..+.++||+|+.....||+++.++...++++|++++|+|..|++.++++|+++ ||+||+|+..||-+
T Consensus        83 ~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~n-Tkavf~EtigNP~~  161 (426)
T COG2873          83 VASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDEN-TKAVFAETIGNPGL  161 (426)
T ss_pred             hccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcc-cceEEEEeccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999985 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH--H-------------
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG--K-------------  375 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~--e-------------  375 (451)
                      .+.|+++|+++||++|+++|||||+++|+..+|+++|+|||+||+|||++|||..+||+|+-.-  +             
T Consensus       162 ~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p  241 (426)
T COG2873         162 DVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTP  241 (426)
T ss_pred             cccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999987210  0             


Q ss_pred             -----------------HHHHHH-HHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCC
Q 013019          376 -----------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITL  437 (451)
Q Consensus       376 -----------------li~~lr-~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPg  437 (451)
                                       ++-+.| ...+.+|.+++|+.+|+++.||+||.+||+||++||+++++||++||+|.+|+|||
T Consensus       242 ~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~Ypg  321 (426)
T COG2873         242 DPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPG  321 (426)
T ss_pred             CccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCC
Confidence                             111222 34457899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccc
Q 013019          438 LLCFYNGTLVG  448 (451)
Q Consensus       438 L~~~p~~~lv~  448 (451)
                      |++||.+.+..
T Consensus       322 L~~~~~h~la~  332 (426)
T COG2873         322 LASHPYHALAK  332 (426)
T ss_pred             CCCCcchhHHH
Confidence            99999988754

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=7.3e-59  Score=479.77  Aligned_cols=292  Identities=26%  Similarity=0.423  Sum_probs=272.6

Q ss_pred             ccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhccc-CCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR-ASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~-~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      ++|+++|.|...  ...+++++||||+|+||.|++.+++.+.+.++. .+|.|+|.+|||++.||++|++++|++.++++
T Consensus         6 ~~t~~~~~~~~~--~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~~~~~~~YsR~~nPt~~~le~~la~LEg~~~a~~~   83 (395)
T PRK08114          6 LDTQLVNAGRSK--KYTQGSVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQEAMCELEGGAGCALY   83 (395)
T ss_pred             cchheEeCCCCC--CCCCCCccCCeeCCCceecCCHHHHHHhhccCcCCCccccCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence            679999999532  223489999999999999999988877665543 45999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+||.+++.+++++||+||+++..|++++.+++..++++|++++++|..|.++++++++++ ||+|++|+|+||+|.
T Consensus        84 ~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~-TrlV~~EtpsNp~~~  162 (395)
T PRK08114         84 PCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPN-TKVVFLESPGSITME  162 (395)
T ss_pred             hHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCCE
Confidence            9999999999999999999999999999999999988899999999999998999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcC--CEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCC
Q 013019          312 CVDVKLVSDLCHKKG--AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG  389 (451)
Q Consensus       312 v~DL~~IaelA~~~g--~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~  389 (451)
                      +.||++|+++||++|  ++++||+||++|+.++|+++|+|++++|+|||++||+|+++|+++.+++++++++..+..+|.
T Consensus       163 v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~  242 (395)
T PRK08114        163 VHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQ  242 (395)
T ss_pred             eecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccC
Confidence            999999999999984  999999999999999999999999999999999999999999999888888888888888999


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      .++|+++|+++|||+||..||++|++||..+++||++||.|++|+||+|++||++++.
T Consensus       243 ~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~  300 (395)
T PRK08114        243 MVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFW  300 (395)
T ss_pred             CCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHH
Confidence            9999999999999999999999999999999999999999999999999999998764

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=7.5e-58  Score=463.57  Aligned_cols=298  Identities=39%  Similarity=0.616  Sum_probs=275.6

Q ss_pred             ccCCCccccccccCCcCCCCCCCCCccCCccccCCCccCCH-HHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCC
Q 013019          148 SFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT-AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAE  226 (451)
Q Consensus       148 ~~~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~-~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae  226 (451)
                      ++...++|.++|+|+..+.. ..++++||||.+.+++|+.. .+.....  +..+|.|+|.+||++..||+.|++++|++
T Consensus        17 ~~~~~~~t~~~~~g~~~~~~-~~~~v~~pI~~~~s~tfk~~~~~~~~~~--~~~~~~Ysr~~nPt~~~le~~iaal~ga~   93 (409)
T KOG0053|consen   17 SRLSHLDTNLLHAGQDPEKA-IHNAVAPPIYATLSTTFKQDLNEGEHGG--NLDGYDYSRSGNPTRDVLESGIAALEGAA   93 (409)
T ss_pred             hhccccchhhhhcccccchh-ccccccCceecccceeecccCccccccc--cccccccccCCCCchHHHHHHHHHHhCCc
Confidence            34466999999999886543 57899999997777777765 3222111  11259999999999999999999999999


Q ss_pred             cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCC
Q 013019          227 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT  306 (451)
Q Consensus       227 ~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPs  306 (451)
                      .+++++|||+|+..+++.|+++|++|++.+.+|++|+.+++.++.++|++.+++|..|++++++++++ +|++||+|+|+
T Consensus        94 ~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~~~~~i~~-~t~~V~~ESPs  172 (409)
T KOG0053|consen   94 HALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKKILKAIKE-NTKAVFLESPS  172 (409)
T ss_pred             eEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHHHHHhhcc-CceEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 49999999999


Q ss_pred             CCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhH
Q 013019          307 NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH  385 (451)
Q Consensus       307 NPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~  385 (451)
                      ||++++.||++|+++||++|+++||||||++|++++|+.+|||||++|+|||++||+|+++|.++.+ +++..+++..+.
T Consensus       173 NPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~  252 (409)
T KOG0053|consen  173 NPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE  252 (409)
T ss_pred             CCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999997 899999999999


Q ss_pred             hhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccccc
Q 013019          386 VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGF  449 (451)
Q Consensus       386 ~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~f  449 (451)
                      .+|.+++|+++|++.|+++|+.+|++++.+|+..+|++|+++|.|++|+||||++||+++++.+
T Consensus       253 ~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~  316 (409)
T KOG0053|consen  253 DLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKR  316 (409)
T ss_pred             HhcCCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999988764

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=6e-57  Score=465.82  Aligned_cols=289  Identities=30%  Similarity=0.542  Sum_probs=269.2

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++..    ...+|.|+|.+||+++.||+.|+.+++++.++++
T Consensus        12 ~~~t~~~~~~~~~~--~~~~~~~~Pi~~sst~~~~~~~~~~~----~~~~y~YsR~gnPt~~~Le~~la~le~~~~~v~~   85 (395)
T PRK05967         12 GINTRLAHDGNDPG--DYHGFVNPPVVHASTVLFPDAETMAT----RGQKYTYGTRGTPTTDALCKAIDALEGSAGTILV   85 (395)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCChHHhhc----ccCCCccCCCCChHHHHHHHHHHHHhCCCCEEEE
Confidence            36899999996532  34689999999999999999887542    2357999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+..++++++++||+||++++.|++++.++...++++|+++++++..+.++++++++++ ||+|++|+|+||++.
T Consensus        86 sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~-TklV~lesPsNP~l~  164 (395)
T PRK05967         86 PSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPN-TKVVHTEAPGSNTFE  164 (395)
T ss_pred             CcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcC-ceEEEEECCCCCCCc
Confidence            9999999999999999999999999999999988888889999999999987788899999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL  391 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l  391 (451)
                      +.||++|+++||++|+++|+|+||++|+.++|+++|+|++++|+|||++||+|+++|+++++++++++++..+..+|..+
T Consensus       165 v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~  244 (395)
T PRK05967        165 MQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCA  244 (395)
T ss_pred             HHHHHHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988888888887788899999


Q ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       392 s~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +|+++|+++|||+||..||++|++|+..|++||++||+|++|+||+|++||++++.
T Consensus       245 ~p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~  300 (395)
T PRK05967        245 GPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIW  300 (395)
T ss_pred             CHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999998864

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.6e-56  Score=462.95  Aligned_cols=293  Identities=29%  Similarity=0.509  Sum_probs=270.2

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhccc-CCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR-ASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~-~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      +++|+++|.|...  ....++++||||+|+||.|++.+++.+.+.+.. .+|.|+|++||+...||++||++++++++++
T Consensus         4 ~~~t~~~~~~~~~--~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~   81 (394)
T PRK09028          4 KKATKIVSAGRDK--KWTKGVINPPVFRASTVVFDTVAEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL   81 (394)
T ss_pred             CccceeEEcCCCC--CCCCCCccCCeeCCCCcccCCHHHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            4789999999542  223489999999999999999988776554332 3588999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++|||+||.+++.+++++||+||++++.|++++.++...+.++|+++.+++..+.++++++++++ ||+|++|+|+||+|
T Consensus        82 ~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~-TklV~lespsNPtg  160 (394)
T PRK09028         82 YPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPN-TKVLFLESPGSITM  160 (394)
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCC
Confidence            99999999999999999999999999999999988877788899999999887888999999874 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCC
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~  390 (451)
                      .+.|+++|+++||++|+++++|+||++++.++|+++|+|++++|+|||++||+|+++|+++.++++.++++..+..+|.+
T Consensus       161 ~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~  240 (394)
T PRK09028        161 EVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQC  240 (394)
T ss_pred             cHHHHHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999988888888888888889999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++|+++|+++|||+||..||++|++||+++++||++||.|++|+||||++||++++.
T Consensus       241 ~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~  297 (394)
T PRK09028        241 TSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFF  297 (394)
T ss_pred             CCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999998874

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.5e-54  Score=452.29  Aligned_cols=292  Identities=28%  Similarity=0.462  Sum_probs=264.4

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...  . .+++++||||+++||.|++.+++...++....+|.|+|.+||+++.||+.|++++|++.++++
T Consensus         6 ~~~t~~~~~g~~~--~-~~~~~~~PI~~sst~~f~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~   82 (432)
T PRK06702          6 GKGTICVQGGYTP--K-NGEPRVLPLYQSTTYKYDTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVAT   82 (432)
T ss_pred             CcchHheeCCCCC--C-CCCCccCCccCCcceecCCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEE
Confidence            3689999999632  2 268999999999999999998877766555567899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-CCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      +|||+||.+++.+++++||+||++.++|++|+.++...+..+|++++++|. .|+++++++|+++ ||+||+|+|+||++
T Consensus        83 ~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~-Tk~I~~e~pgnP~~  161 (432)
T PRK06702         83 ASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDK-TKLVYAESLGNPAM  161 (432)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcC-CeEEEEEcCCCccc
Confidence            999999999999999999999999999999999988878899999999998 4899999999985 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH----------HH----
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG----------KL----  376 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~----------el----  376 (451)
                      .+.|+++|+++|+++|+++|+|+||++|+.++|+++|+|||++|+|||++||+|+++|+++...          ++    
T Consensus       162 ~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~  241 (432)
T PRK06702        162 NVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPD  241 (432)
T ss_pred             cccCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999987422          11    


Q ss_pred             -----------------HHHHH-HHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC
Q 013019          377 -----------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       377 -----------------i~~lr-~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                                       +.+.+ .....+|.+++|+++|+++++|+|++.|++++++|+.+|++||++||.|++|+||+|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl  321 (432)
T PRK06702        242 PSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGL  321 (432)
T ss_pred             ccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCC
Confidence                             11222 345567899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccc
Q 013019          439 LCFYNGTLV  447 (451)
Q Consensus       439 ~~~p~~~lv  447 (451)
                      ++||++++.
T Consensus       322 ~~~p~~~l~  330 (432)
T PRK06702        322 DSNENYSLA  330 (432)
T ss_pred             CCCccHHHH
Confidence            999987754

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.8e-54  Score=447.29  Aligned_cols=285  Identities=28%  Similarity=0.475  Sum_probs=262.9

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+|+||.|++..        +..+|.|+|++||+...||++||+++|++.++++
T Consensus         5 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~--------~~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivvt   74 (388)
T PRK08861          5 KPATIAVRTGIESD--SQYHAVVPPIYLSTNYGFPAFG--------EVPKYDYTRSGNPNRGLLEQTLSELESGKGAVVT   74 (388)
T ss_pred             CcccceeECCCCCC--CCCCCccCCcccCcceEeCCcC--------ccCCccccCCCCchHHHHHHHHHHHhCCCeEEEE
Confidence            36899999996543  3358999999999999998742        2346999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++++++++||+|+++++.|++++.++...+...|+++.++|..|+++++++++++ +++|++|+|+||||.
T Consensus        75 ~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~-tklV~lesP~NPtG~  153 (388)
T PRK08861         75 NCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKK-PKLILLETPSNPLVR  153 (388)
T ss_pred             CCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999998887766667778999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.++.++|+++|+|++++|+|||++||+|+++|+++++ +++.++++..+..+|..
T Consensus       154 v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~  233 (388)
T PRK08861        154 VVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGAT  233 (388)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999988999999999999999999999999999999875 56778888888899999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++|+++|+++|||+||..||++|++||++|++||++||.|++|+||+|++||++++.
T Consensus       234 ~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~  290 (388)
T PRK08861        234 GTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIA  290 (388)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHH
Confidence            999999999999999999999999999999999999999999999999999998764

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=1.3e-52  Score=432.35  Aligned_cols=286  Identities=27%  Similarity=0.492  Sum_probs=262.1

Q ss_pred             ccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCH
Q 013019          155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASG  234 (451)
Q Consensus       155 t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG  234 (451)
                      |+++|.|...+  ..+++++||||+|+||.|++.++..    .+..+|.|+|++||+...||++||+++|++++++++||
T Consensus         1 t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~----~~~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG   74 (377)
T TIGR01324         1 TRLIHSGRQPR--FSQGSVNPPLQRASTVLFDSHAAQR----RAKGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPSG   74 (377)
T ss_pred             CeeEECCCCCC--CCCCCccCCeeCCCceeeCChhhhc----CCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECcH
Confidence            56789886532  2368999999999999999864432    23357999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc
Q 013019          235 MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD  314 (451)
Q Consensus       235 ~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D  314 (451)
                      |+|+..++.+++++||+||++++.|+++..++...++.+|+++++++..+.++++++++++ ||+|++|+|+||+|.+.|
T Consensus        75 ~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~-tklV~lesp~Np~g~~~d  153 (377)
T TIGR01324        75 LAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPN-TKVLFLEAPSSITFEIQD  153 (377)
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCCcHHH
Confidence            9999999999999999999999999998887766677889999998876668899999874 999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHH
Q 013019          315 VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  394 (451)
Q Consensus       315 L~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~  394 (451)
                      +++|+++|+++|+++|+|++|+.+..++|+++|+|++++|+|||++||+|+++|+++++++++++++.....+|..++|+
T Consensus       154 l~~I~~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~  233 (377)
T TIGR01324       154 IPAIAKAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDAD  233 (377)
T ss_pred             HHHHHHHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888887777889999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       395 ~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++|+++|+++++..||+++++||++++++|++||.|++|+||+|++||++++.
T Consensus       234 ~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~  286 (377)
T TIGR01324       234 DAYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFW  286 (377)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHH
Confidence            99999999999999999999999999999999999999999999999998764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.1e-52  Score=433.57  Aligned_cols=293  Identities=39%  Similarity=0.627  Sum_probs=272.2

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|...+  ..+++++||||+++||.|++.+++.+.+.++..+|.|+|+++|+.++||++|++++|++.++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~   85 (398)
T PRK08249          8 GVGTKAVWAGEKEY--LPYGATQVPVVLSVAYGYDDIDEWYDVALGKKPGHIYSRNTNPTVQAFEEKVRILEGAEAATAF   85 (398)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCCHHHHHHhhcCCcCCccccCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence            36799999996532  3468999999999999999998777666555567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++.+.|+++..++...++..|+++.++|..|+++++++++++ |++|++|+|+||+|.
T Consensus        86 ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~-tklV~ie~p~NPtg~  164 (398)
T PRK08249         86 STGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLK  164 (398)
T ss_pred             CChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999999888877788899999999999999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL  391 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l  391 (451)
                      +.|+++|.++|+++|+++|+|++|+.++.++++.+|+|++++|+||+++||+|.++|+++++++++++++..+...|..+
T Consensus       165 v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~  244 (398)
T PRK08249        165 IVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATM  244 (398)
T ss_pred             cCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999888888889999999999999999999999999999999999998888889999


Q ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       392 s~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +++.+|+++++++++..|++++.+|++.++++|++||.|++|+||||++||++++.
T Consensus       245 s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  300 (398)
T PRK08249        245 DPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIA  300 (398)
T ss_pred             CHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999998764

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=2.8e-52  Score=433.34  Aligned_cols=292  Identities=35%  Similarity=0.532  Sum_probs=269.4

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|...   ..++++++|||+++||.|++.+++.+.+.++..+|.|+||+||+.+.||++||+++|.++++++
T Consensus        15 ~~~t~~~~~~~~~---~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al~~   91 (403)
T PRK07810         15 SQATIGVRGGLLR---SGFEETAEALYLTSGYVYESAAAAEAAFTGELDRFVYSRYGNPTVSMFEERLRLIEGAEACFAT   91 (403)
T ss_pred             CcchhheeCCCCC---CCCCCccCCccCCCccccCCHHHHHHHhccCcCCcceeCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            5789999999642   2367899999999999999998877666555567889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+..++.+++++||+|++++..|++++..+...++..|+++.++|..|+++++++++++ +++|++|+|+||+|.
T Consensus        92 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~-tklV~~esp~Nptg~  170 (403)
T PRK07810         92 ASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVP-TQAVFFETPSNPMQS  170 (403)
T ss_pred             CChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCCe
Confidence            9999999999999999999999999999999988888888899999999999999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHH-HHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.++.++++++|+|++++|+||+++||||++||+++++++++. +++.+...+|..
T Consensus       171 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~  250 (403)
T PRK07810        171 LVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  250 (403)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999998889999999999999999999999999999999887665 577677788999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++++|+++++|+++..|++++.+|+.++++||++||+|++|+||||++||++++.
T Consensus       251 ~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~  307 (403)
T PRK07810        251 LSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLA  307 (403)
T ss_pred             CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999977654

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=6.3e-52  Score=433.90  Aligned_cols=294  Identities=34%  Similarity=0.541  Sum_probs=266.5

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..++++++|||+|+||.|++.+++.+.+.....+|.|+|++||+...||++|++++|.+.++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~leg~~~al~~   85 (431)
T PRK08248          8 RLETLAIHAGQEID--PTTGSRAVPIYQTTSYGFRDSEHAANLFSLKEFGNIYTRIMNPTTDVFEKRIAALEGGIGALAV   85 (431)
T ss_pred             CcchhheeCCcCCC--CCCCCccCCeeCCCccccCCHHHHHhhhccccCCceeECCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            36799999996532  3468999999999999999999888776655567899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+..++.+++++||+|+++++.|++++..+...++.+|+++.++|..|+++++++++++ +++|++++|+||+|.
T Consensus        86 ~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~-tklV~l~sp~NPtG~  164 (431)
T PRK08248         86 SSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDK-TKALFAETIGNPKGD  164 (431)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999999988888888999999999999999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHH---------------
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------  376 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el---------------  376 (451)
                      +.|+++|.++|+++|+++|+|++|+.+..+.|+++|+|++++|+||+++||+|++||+++.+.+.               
T Consensus       165 v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~  244 (431)
T PRK08248        165 VLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPD  244 (431)
T ss_pred             ccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCc
Confidence            99999999999999999999999999888899999999999999999999999999998864321               


Q ss_pred             ------------------HHHHHHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC
Q 013019          377 ------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       377 ------------------i~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                                        .+.++.....+|..++|++||+++|||+||+.|++++++||.+|+++|++||+|++|+||+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl  324 (431)
T PRK08248        245 PSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGL  324 (431)
T ss_pred             cccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCC
Confidence                              11223455678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccc
Q 013019          439 LCFYNGTLVG  448 (451)
Q Consensus       439 ~~~p~~~lv~  448 (451)
                      ++||++.+..
T Consensus       325 ~s~p~~~~~~  334 (431)
T PRK08248        325 PSHPSYELAK  334 (431)
T ss_pred             CCCccHHHHH
Confidence            9999987643

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.3e-51  Score=431.75  Aligned_cols=293  Identities=35%  Similarity=0.523  Sum_probs=264.0

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.....+|.|+|++||+.+.||+.|++++|.+.++++
T Consensus        13 ~~~t~~~~~~~~~~--~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~av~~   90 (436)
T PRK07812         13 SFETKQIHAGQTPD--PATNARALPIYQTTSYTFDDTDHAAALFGLAEPGNIYTRIMNPTQDVVEQRIAALEGGVAALLL   90 (436)
T ss_pred             CcchhheeCCCCCC--CCCCCccCCCcCCCCcccCCHHHHHHhhcCCcCCccccCCCCchHHHHHHHHHHHhCCCeEEEE
Confidence            37899999996532  2368999999999999999998877766655567899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-CCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-PADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      +|||+|+.+++.+++++||+|+++...|++++.++...+.+.|+++.+++ ..|+++++++++++ +++|++|+|+||+|
T Consensus        91 sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~-tklV~ie~~sNp~G  169 (436)
T PRK07812         91 ASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPN-TKAFFAETISNPQI  169 (436)
T ss_pred             ccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCC-CeEEEEECCCCCCC
Confidence            99999999999999999999999999999999888777788999999985 66899999999875 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHH---------------
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------  375 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e---------------  375 (451)
                      .+.|+++|.++||++|+++|+|+|+++++.++++++|+|++++|+||+++|||++++|+++.+..               
T Consensus       170 ~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~  249 (436)
T PRK07812        170 DVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPD  249 (436)
T ss_pred             eecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999886321               


Q ss_pred             ---------------HHHHHH-HHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCC
Q 013019          376 ---------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLL  439 (451)
Q Consensus       376 ---------------li~~lr-~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~  439 (451)
                                     ++.+++ ..+...|..++|+++|+++|||+||..|++++++||.+|+++|++||+|++|+||||+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~  329 (436)
T PRK07812        250 PSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLP  329 (436)
T ss_pred             cccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence                           111222 3455789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccc
Q 013019          440 CFYNGTLV  447 (451)
Q Consensus       440 ~~p~~~lv  447 (451)
                      +||++++.
T Consensus       330 s~p~~~~~  337 (436)
T PRK07812        330 SSPWYERA  337 (436)
T ss_pred             CCccHHHH
Confidence            99998764

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.9e-51  Score=424.97  Aligned_cols=286  Identities=30%  Similarity=0.499  Sum_probs=262.7

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      ++++|+++|.|...+  ..+++++||||+++||.|++.++        ..+|.|+||+||+.+.|+++||+++|.+++++
T Consensus         3 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~--------~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~   72 (386)
T PRK08045          3 RKQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFNE--------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVL   72 (386)
T ss_pred             CCcccceeEcCCCCC--CCCCCccCCccCCcceecCCccc--------cCCceeeCCCCccHHHHHHHHHHHhCCCeEEE
Confidence            457899999996532  34689999999999999987542        23689999999999999999999999989999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++||++|+..++.+++++||+|+++++.|++++..+.......++++.+++..|+++++++++++ +++|++|+|+||||
T Consensus        73 ~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~-tklV~l~sP~NPtG  151 (386)
T PRK08045         73 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLL  151 (386)
T ss_pred             ECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccC-CeEEEEECCCCCCC
Confidence            99999999999999999999999999999998888877777777888888888999999999874 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCC
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG  389 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~  389 (451)
                      .+.|+++|.++|+++|+++|+|++|+.+..++|+++|+|++++|+|||++||+|+++|++++ +++++++++..+..+|.
T Consensus       152 ~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~  231 (386)
T PRK08045        152 RVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV  231 (386)
T ss_pred             EecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999998889999999999999999999999999999877 57888999888888999


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +++++++|+++|+|+++..|++++.+|+++|++||++||.|++|+||+|++||++++.
T Consensus       232 ~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~  289 (386)
T PRK08045        232 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIA  289 (386)
T ss_pred             CCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHH
Confidence            9999999999999999999999999999999999999999999999999999998874

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=2.3e-51  Score=425.34  Aligned_cols=292  Identities=22%  Similarity=0.406  Sum_probs=269.3

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+||+||+.++||+++++++|.+.++++
T Consensus         9 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~   86 (394)
T PRK07050          9 ALQTRIVQPDDQIP--PGFRSFVTPVARASTVVFPDLATMRALDWRQDVQWRYGLHATPTSLALAQRLAEIEGGRHALLQ   86 (394)
T ss_pred             CccchheECCCCCC--CCCCCccCCeeCCcceecCCHHHHHhhcccccCCcccCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence            47899999996532  3468999999999999999998877655545567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+.+++.+++++||+||++++.|++++.++...+..+|+++.+++..+.++++++++++ |++|++|+|+||+|.
T Consensus        87 ~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~-tklV~le~p~Np~~~  165 (394)
T PRK07050         87 PSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPN-TRLIWLEAPGSVTME  165 (394)
T ss_pred             ccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCcc
Confidence            9999999999999999999999999999999887777778889999999887788999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|+++|+++|+++|+|++|+.+..++++++|+|++++|+||+++||+|+++|++++ +++++++++..+..+|.+
T Consensus       166 ~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~  245 (394)
T PRK07050        166 VPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIG  245 (394)
T ss_pred             HhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999999999998997776 578889999888888999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ++++++|+++++|+++..|++++++|+++|++||++||+|.+|+||+|++||++.+
T Consensus       246 ~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~  301 (394)
T PRK07050        246 VSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAF  301 (394)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHH
Confidence            99999999999999999999999999999999999999999999999999998765

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=1.6e-51  Score=431.05  Aligned_cols=292  Identities=31%  Similarity=0.439  Sum_probs=262.6

Q ss_pred             ccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 013019          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (451)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~s  232 (451)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.....+|.|+|+++|+.+.||+.|++++|++.+++++
T Consensus        14 ~~t~~~~~~~~~~--~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~~~~~~Y~r~~~pt~~~le~~la~l~g~~~~v~fs   91 (437)
T PRK05613         14 FETRSIHAGQSVD--SDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGPIYSRLTNPTVEALENRIASLEGGVHAVAFA   91 (437)
T ss_pred             cchHheeCCCCCC--CCCCCccCCEeCCCCcccCCHHHHHHhhccccCCceeeCccChHHHHHHHHHHHHhCCCeEEEeC
Confidence            6899999996532  34689999999999999999988776555455679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-CCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-PADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       233 SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      |||+|+.+++.+++++||+||+++..|+++...+...+.++|+++.++| ..|+++++++++++ |++|++|+++||+|.
T Consensus        92 SG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~-tk~V~~e~~~Np~~~  170 (437)
T PRK05613         92 SGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPN-TKAFFGETFANPQAD  170 (437)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCcc-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999998777777888999999997 56899999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHH----------------
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----------------  375 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e----------------  375 (451)
                      +.|+++|+++|+++|+++|+|+|++.+..++++++|+|++++|+||+++||++.+||+++.+.+                
T Consensus       171 v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~  250 (437)
T PRK05613        171 VLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYF  250 (437)
T ss_pred             ccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCC
Confidence            9999999999999999999999999988899999999999999999999999999999986422                


Q ss_pred             -------------------HH-HHHHHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Q 013019          376 -------------------LV-TQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFI  435 (451)
Q Consensus       376 -------------------li-~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~y  435 (451)
                                         ++ +........+|..++|+++|+++|||+||..||+++++||.+|++||++||+|++|+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~y  330 (437)
T PRK05613        251 VTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNF  330 (437)
T ss_pred             CCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEEC
Confidence                               01 1122455678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccc
Q 013019          436 TLLLCFYNGTLV  447 (451)
Q Consensus       436 PgL~~~p~~~lv  447 (451)
                      |+|++||++++.
T Consensus       331 Pgl~~~p~~~~~  342 (437)
T PRK05613        331 AGLKDSPWYATK  342 (437)
T ss_pred             CCCCCCccHHHH
Confidence            999999998765

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=3e-51  Score=424.18  Aligned_cols=293  Identities=34%  Similarity=0.558  Sum_probs=269.7

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+++||.|++.+++.+.+.+...+|.|+||+||+.+.||++||+++|.+.++++
T Consensus         3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~~   80 (391)
T TIGR01328         3 TFATRAIHAGYPPK--DQFGALTPPIYQTSTFVFDSCEQGGNRFAGQESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVAT   80 (391)
T ss_pred             CcccceeeCCccCC--CCCCCccCCcccCcceecCChHHHHHhhcCCcCCCceeCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            46899999996532  3468999999999999999998887766555567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++++.|++++..+...+..+|+++.++|..|+++++++++++ |++|++|+|+||+|.
T Consensus        81 ~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~-tklV~le~p~Np~G~  159 (391)
T TIGR01328        81 SSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDN-TKIVYFETPANPTMK  159 (391)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999999888888788899999999999999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh--HhhCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGG  389 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~--~~~G~  389 (451)
                      +.|+++|.++|+++|+++|+|++|+.++.++++..|+|++++|+||+++|++++++|+++++++++++++...  ...|.
T Consensus       160 v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~  239 (391)
T TIGR01328       160 LIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGS  239 (391)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999988888889999999999999999999988999999999999888643  24577


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      .++++.+|+++++|+++..|++++.+|++.++++|++||+|+.|+||+|++||++++.
T Consensus       240 ~l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~  297 (391)
T TIGR01328       240 VISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIA  297 (391)
T ss_pred             CCCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence            8999999999999999999999999999999999999999999999999999998864

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=3.4e-51  Score=427.78  Aligned_cols=292  Identities=33%  Similarity=0.509  Sum_probs=262.4

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|+++|+.+.||++|++++|.+.++++
T Consensus         2 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~   79 (425)
T PRK06084          2 KLETLAIHAGYSPD--PTTKAVAVPIYQTTSYAFDDTQHGADLFDLKVPGNIYTRIMNPTNDVLEQRVAALEGGVGALAV   79 (425)
T ss_pred             CcchhheeCCcCCC--CCCCCccCCEeCCCCcccCCHHHHHHhhccccCCccccCCCCchHHHHHHHHHHHhCCCceeEe
Confidence            36799999996532  2358999999999999999998887766655567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+.+++.+++++||+|+++.+.|++++..+...++..|+++.+++..|+++|+++++++ +++|++|+|+||+|.
T Consensus        80 ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~-tklV~lesp~NPtG~  158 (425)
T PRK06084         80 ASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDER-TKAVFCESIGNPAGN  158 (425)
T ss_pred             hhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccC-CcEEEEeCCCCCCCe
Confidence            9999999999999999999999999999999888877777789999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHH---------------
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------  376 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el---------------  376 (451)
                      +.|+++|.++|+++|++||+|++++.+..++++++|+|++++|+||+++||++++||+++.+..+               
T Consensus       159 v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~  238 (425)
T PRK06084        159 IIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTP  238 (425)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999874321               


Q ss_pred             ------------------HHH-HHHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCC
Q 013019          377 ------------------VTQ-IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITL  437 (451)
Q Consensus       377 ------------------i~~-lr~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPg  437 (451)
                                        ..+ ....+..+|..++|++||+++++|+++..|++++++|+++++++|++||+|++|+||+
T Consensus       239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~  318 (425)
T PRK06084        239 DPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAG  318 (425)
T ss_pred             CcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence                              001 1122446789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcc
Q 013019          438 LLCFYNGTL  446 (451)
Q Consensus       438 L~~~p~~~l  446 (451)
                      |++||++.+
T Consensus       319 l~~~p~~~~  327 (425)
T PRK06084        319 LPDHPEHEL  327 (425)
T ss_pred             CCCcccHHH
Confidence            999999876

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=7.6e-51  Score=421.78  Aligned_cols=277  Identities=32%  Similarity=0.554  Sum_probs=251.0

Q ss_pred             CCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccC
Q 013019          169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA  248 (451)
Q Consensus       169 ~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~  248 (451)
                      .+++++||||+|+||.|++.+++.+.+.++..+|.|+|++||+.+.||++|++++|++.+++++|||+|+..++.+++++
T Consensus         6 ~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~   85 (397)
T PRK05939          6 EHGAVHKPIHTSVTYGYEDARDLIDVFQGKKPGFTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRA   85 (397)
T ss_pred             CCCCccCCccCCCCeecCCHHHHHHhhcCCcCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCC
Confidence            46889999999999999999888877766556799999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCE
Q 013019          249 GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAI  328 (451)
Q Consensus       249 GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~  328 (451)
                      ||+|+++++.|+++..++.. +...|+++.+++..|+++|+++++++ |++|++|+|+||+|.+.|+++|+++||++|++
T Consensus        86 Gd~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~~d~e~l~~~l~~~-tklV~vesp~NptG~v~dl~~I~~la~~~gi~  163 (397)
T PRK05939         86 GDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQNVAAAIRPN-TRMVFVETIANPGTQVADLAGIGALCRERGLL  163 (397)
T ss_pred             CCEEEECCCccccHHHHHHH-HHhcCCEEEEECCCCHHHHHHhCCCC-CeEEEEECCCCCCCCHHhHHHHHHHHHHcCCE
Confidence            99999999999998877744 67789999999998999999999874 99999999999999999999999999999999


Q ss_pred             EEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHH--------H-------------HHHHH-HHhHh
Q 013019          329 VCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------L-------------VTQIR-NLHHV  386 (451)
Q Consensus       329 lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e--------l-------------i~~lr-~~~~~  386 (451)
                      +|+|++++++..++++.+|+|++++|+||+++||+++++|+++.+..        +             +.+++ .....
T Consensus       164 livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (397)
T PRK05939        164 YVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRD  243 (397)
T ss_pred             EEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHh
Confidence            99999999988888999999999999999999999999998875321        1             12222 23346


Q ss_pred             hCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       387 ~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +|..++|+++|+++|||+||..|++++.+|+.+|++||++||+|++|+||+|++||++++.
T Consensus       244 ~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~  304 (397)
T PRK05939        244 MGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARA  304 (397)
T ss_pred             cCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHH
Confidence            7999999999999999999999999999999999999999999999999999999998764

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.1e-50  Score=421.54  Aligned_cols=291  Identities=35%  Similarity=0.545  Sum_probs=269.3

Q ss_pred             ccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 013019          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (451)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~s  232 (451)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|+++|+.+.||++|++++|++.+++++
T Consensus        10 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~   87 (403)
T PRK07503         10 FSTRAIHHGYDPL--DHGGALVPPVYLTATFAFPTAEYGAECFAGEEEGHFYSRISNPTLALLEQRMASLEGGEAAVALA   87 (403)
T ss_pred             ccchheeCCCCCC--CCCCCccCCcccCcceecCChHHHHHhhccccCCceeeCCCCchHHHHHHHHHHHhCCCcEEEEc
Confidence            6799999996532  34689999999999999999998888776666679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccc
Q 013019          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (451)
Q Consensus       233 SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v  312 (451)
                      |||+|+.+++.+++++||+||++.+.|+.++.++...+...|++++++|..|++++++++++ +|++|++|+|+||+|.+
T Consensus        88 sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~-~tklV~le~p~NPtG~~  166 (403)
T PRK07503         88 SGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISD-KTRMVYFETPANPNMRL  166 (403)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCc-cCcEEEEeCCCCCCCee
Confidence            99999999999999999999999999999888887778889999999999899999999987 49999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH--hHhhCCC
Q 013019          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVLGGA  390 (451)
Q Consensus       313 ~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~--~~~~G~~  390 (451)
                      .|+++|.++|+++|+++|+|++|+.++.++++.+|+|++++|+||+++||+|+++|+++++++++++++..  +...|..
T Consensus       167 ~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~  246 (403)
T PRK07503        167 VDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAV  246 (403)
T ss_pred             eCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCC
Confidence            99999999999999999999999998888888899999999999999999999999999999999988743  5567889


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ++++++|+++++|+++..|++++.+|++.++++|++||.|++|+||++++||++++
T Consensus       247 ~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~  302 (403)
T PRK07503        247 MSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHAL  302 (403)
T ss_pred             CCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHH
Confidence            99999999999999999999999999999999999999999999999999999765

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2e-50  Score=422.67  Aligned_cols=293  Identities=31%  Similarity=0.534  Sum_probs=262.9

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|++||+.++||+++|+++|++.++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~y~R~~~p~~~~le~~lA~l~g~~~av~~   85 (433)
T PRK08134          8 GFDTLALHAGAAPD--PATGARAVPIHLTTSFVFRDSDHAAALFNLERAGHVYSRISNPTVAVLEERVAALEGGVGAIAT   85 (433)
T ss_pred             CcchhheeCCCCCC--CCCCCccCCccCCCccccCCHHHHHHhhcccccCceeecCcChHHHHHHHHHHHHhCCCcEEEe
Confidence            36799999996532  3468999999999999999998887766655567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+.+++.+++++||+||+++..|+++..++...+.++|++++++|..|+++|+++|+++ |++|++++|+||+|.
T Consensus        86 sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~-TklV~~e~~~np~g~  164 (433)
T PRK08134         86 ASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPN-TRLLFGETLGNPGLE  164 (433)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCcccCc
Confidence            9999999999999999999999999999999888877778899999999988999999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHH----------------
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----------------  375 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e----------------  375 (451)
                      +.|+++|+++||++|+++|+|+|+++++.+.|+++|+|++++|.|||++||+|++||+++....                
T Consensus       165 v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~  244 (433)
T PRK08134        165 VLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPY  244 (433)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCc
Confidence            9999999999999999999999999999999999999999999999999999999998874211                


Q ss_pred             ----------------HHHHH-HHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC
Q 013019          376 ----------------LVTQI-RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       376 ----------------li~~l-r~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                                      +..+. ......+|..+++++||+++++|++++.|++++++||.+++++|++||.|++|+||+|
T Consensus       245 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l  324 (433)
T PRK08134        245 AGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPEL  324 (433)
T ss_pred             ccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence                            01111 1233467889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccc
Q 013019          439 LCFYNGTLV  447 (451)
Q Consensus       439 ~~~p~~~lv  447 (451)
                      ++||++++.
T Consensus       325 ~~~p~~~~~  333 (433)
T PRK08134        325 ESHPDHALA  333 (433)
T ss_pred             CCCccHHHH
Confidence            999988765

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=3.5e-50  Score=414.99  Aligned_cols=285  Identities=30%  Similarity=0.507  Sum_probs=260.8

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++|||+++++|.|++..        +..+|.|+||+||+...||++|++++|.++++++
T Consensus         3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~ss~~~~~~~~--------~~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~   72 (382)
T TIGR02080         3 KQATIAVRSGLNSD--TQYGCVVPPIYLSTTYNFTGFN--------EPRAYDYSRSGNPTRDLLQQALAELEGGAGAVVT   72 (382)
T ss_pred             CcccceeecCCCCC--CCCCCccCCeeCCceeEeCCcC--------ccCCCcccCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            47899999996532  2368999999999999987532        1236889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      ++|++||.+++.+++++||+|+++++.|++++..+.......++++.+++..|+++++++++++ +++|++|+|+||||.
T Consensus        73 ~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~-tklV~l~~p~NPtG~  151 (382)
T TIGR02080        73 NTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQK-PKLVLIETPSNPLLR  151 (382)
T ss_pred             cCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCCE
Confidence            9999999999999999999999999999998888877667778899988888899999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.+..+.++.+|+|++++|+|||++|++++++|++++ +++++++++.++..+|..
T Consensus       152 ~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~  231 (382)
T TIGR02080       152 VVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVT  231 (382)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999988888888999999999999999999999999876 578889999888888999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++++|+++++++++..|++++.+|+..+++||++||.|++|+||+|++||++++.
T Consensus       232 ~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~  288 (382)
T TIGR02080       232 GGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIA  288 (382)
T ss_pred             CCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999998864

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=6e-50  Score=412.97  Aligned_cols=285  Identities=35%  Similarity=0.594  Sum_probs=260.8

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+        +..+|.|+|++||+...||+++++++|.+.++++
T Consensus         2 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~~   71 (380)
T PRK06176          2 RMQTKLIHGGISED--TTTGAVSVPIYQTSTYRQDAIG--------RPKGYEYSRSGNPTRFALEELIADLEGGVKGFAF   71 (380)
T ss_pred             CccceeeECCCCCC--CCCCCccCCcccCCceecCCCC--------CcCCCcccCCCChhHHHHHHHHHHHhCCCCEEEE
Confidence            46789999996532  3368999999999999988732        2347999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+.+++ .++++||+|+++++.|++++..+...+...|++++++|..|+++++++++++ +++|++|+|+||+|.
T Consensus        72 ~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~~-t~lV~lesP~Nptg~  149 (380)
T PRK06176         72 ASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLSQIKKAIKPN-TKALYLETPSNPLLK  149 (380)
T ss_pred             CCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHHHHHHhcCcC-ceEEEEECCCCCCce
Confidence            99999998655 6789999999999999999988888888899999999999999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++||++|+++|+|++|+.++.++|+.+|+|++++|+||+++||+|+++|+++++ +++.++++..+...|..
T Consensus       150 ~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~  229 (380)
T PRK06176        150 ITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGV  229 (380)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999888889999999999999999999999999998885 57778888888888989


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVG  448 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~  448 (451)
                      ++++++|+++++++++..|++++++|+.++++||++||.|.+|+||+|++||++.+..
T Consensus       230 ~~~~~~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~  287 (380)
T PRK06176        230 LGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAK  287 (380)
T ss_pred             CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987653

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=8.8e-50  Score=417.44  Aligned_cols=293  Identities=31%  Similarity=0.507  Sum_probs=263.6

Q ss_pred             ccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhc----------ccCCccccCCCchhHHHHHHHHHhh
Q 013019          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEK----------RRASFEYGRYGNPTTVVVEEKMSAL  222 (451)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~----------~~~~~~Y~R~~npt~~~Lee~LA~l  222 (451)
                      ++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+..          ...+|.|+||+||+...||++||++
T Consensus        18 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~~lA~l   95 (427)
T PRK07049         18 PETQMLNYGYDPE--LSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVEDRLAVY   95 (427)
T ss_pred             cccceeeCCCCCC--CCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHHHHHHH
Confidence            6799999996422  236899999999999999999887764421          2345899999999999999999999


Q ss_pred             hCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE-EEEeCCCCHHHHHHhhc----CCCe
Q 013019          223 EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDPADMEGLEAALN----NNNV  297 (451)
Q Consensus       223 ~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~-v~~vd~~D~d~Le~ai~----~~~t  297 (451)
                      +|.+++++++|||+||.+++.+++++||+|+++++.|+++..++...++.+|++ +.+.+..|+++++++++    +.++
T Consensus        96 eg~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~~~d~~~l~~~l~~~~~~~~t  175 (427)
T PRK07049         96 EGAESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFADGLSEAAIGAAAEAAAAKGRV  175 (427)
T ss_pred             hCCCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeCCCCHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999999999999999988877777888997 55666677888887764    2359


Q ss_pred             EEEEEeCCCCCccccccHHHHHHHHHh------cCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEE
Q 013019          298 SLFFTESPTNPFLRCVDVKLVSDLCHK------KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS  371 (451)
Q Consensus       298 klV~lesPsNPtG~v~DL~~IaelA~~------~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv  371 (451)
                      ++||+|+|+||||.+.|+++|.+++++      +++++|+||+|.+++.++|+.+|+|++++|+||+++||+++++|+++
T Consensus       176 klv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~~glr~G~vv  255 (427)
T PRK07049        176 SLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDLVAGAVL  255 (427)
T ss_pred             eEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCCCCcEEEEEE
Confidence            999999999999999999999999988      89999999999998888899999999999999999999999999999


Q ss_pred             eCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC--CCCCCCccc
Q 013019          372 GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLL--LCFYNGTLV  447 (451)
Q Consensus       372 ~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL--~~~p~~~lv  447 (451)
                      ++++++++++..+..+|..++++++|+++++|+++..|++++.+|++.++++|++||+|++|+||++  ++||++++.
T Consensus       256 ~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~  333 (427)
T PRK07049        256 GRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVY  333 (427)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHH
Confidence            9999999999988889999999999999999999999999999999999999999999999999986  999998865

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=1.5e-49  Score=411.24  Aligned_cols=292  Identities=34%  Similarity=0.571  Sum_probs=269.9

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...   ..++++.+|||+++||.+++.++....+.++..+|.|+|+++|+.++||++|++++|+++++++
T Consensus         6 ~~~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~v~~   82 (390)
T PRK08133          6 GFDTLAVRAGQLR---SPFGEHSEALFLTSSFVFESAAEAAARFAGEEPGNIYSRFTNPTVTMFQERLAALEGAEACVAT   82 (390)
T ss_pred             CcchhheeCCCCC---CCCCCccCCccCCCCcccCCHHHHHHhhcCCcCCceeECCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            3679999999642   2367899999999999999988776655545556889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+..++.+++++||+||++++.|++++..+...+..+|+++.+++..|+++++++++++ |++|++|+|+||+|.
T Consensus        83 ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~-tklV~ie~p~NptG~  161 (390)
T PRK08133         83 ASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPN-TKLFFLETPSNPLTE  161 (390)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCC
Confidence            9999999999999999999999999999999988877788899999999998999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL  391 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l  391 (451)
                      +.|+++|.++|+++|+++|+|++|+.+..+.|+.+|+|++++|+||+++|+++++||++++++++++++.......|..+
T Consensus       162 v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~  241 (390)
T PRK08133        162 LADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTL  241 (390)
T ss_pred             cCCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999988889999999999999999999999999999999998888887778889999


Q ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       392 s~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +++++|+++++++++..|++++.+|+..+++||++||+|++|+||+|++||++++.
T Consensus       242 ~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~  297 (390)
T PRK08133        242 SPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELA  297 (390)
T ss_pred             CHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999998764

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=8.4e-50  Score=412.56  Aligned_cols=288  Identities=32%  Similarity=0.498  Sum_probs=257.9

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      |+.+|+++|.|...   ..+++++||||+|+||.+++.+.    +.++..+|.|+|++||+.++||+++|+++|.+++++
T Consensus         1 ~~~~t~~~~~~~~~---~~~~~~~~pi~~~st~~~~~~~~----~~~~~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~   73 (385)
T PRK08574          1 MRRGTDAVRGYRGS---DPYGSLQPPIYLTALFRQEGEAY----PSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALA   73 (385)
T ss_pred             CCccceeeecCCCC---CCCCCccCCccCCcceecCcchh----hcCCcCCceEECCCCccHHHHHHHHHHHhCCCcEEE
Confidence            35678999987442   24689999999999999876532    223335689999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++||++|+..++.+++++||+|+++.+.|+++...++.. ...|+++.+++. |++++++++++.++++|++|+|+||+|
T Consensus        74 ~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~-d~~~l~~~i~~~~tklV~ie~p~NPtG  151 (385)
T PRK08574         74 FNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYP-STEDIIEAIKEGRTKLVFIETMTNPTL  151 (385)
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECC-CHHHHHHhcCccCceEEEEECCCCCCC
Confidence            999999999999999999999999999999988777653 678999888765 689999999863499999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEE-eCHHHHHHHHHHhHhhCC
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGG  389 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv-~~~eli~~lr~~~~~~G~  389 (451)
                      .+.|+++|+++|+++|+++|+|++|+.++.++++++|+|++++|+||+++||+|++||+++ .+++++++++.++..+|.
T Consensus       152 ~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~  231 (385)
T PRK08574        152 KVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGT  231 (385)
T ss_pred             EecCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999888899999999999999999999999999555 467888999888888899


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      .++++++|+++++|+++..|++++.+|++++++||++||.|++|+||+|++||++++.
T Consensus       232 ~~~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  289 (385)
T PRK08574        232 IMQPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVA  289 (385)
T ss_pred             CCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHH
Confidence            9999999999999999999999999999999999999999999999999999997764

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=2.4e-49  Score=408.49  Aligned_cols=290  Identities=37%  Similarity=0.592  Sum_probs=268.0

Q ss_pred             cccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCC
Q 013019          154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMAS  233 (451)
Q Consensus       154 ~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sS  233 (451)
                      .|+++|.|...   ..++++.+|||+++||.|++.++..+.+.++..+|.|+||++|+..+||++|++++|.+.+++++|
T Consensus         1 ~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~s   77 (380)
T TIGR01325         1 ATLAIRGGKER---TEFREHAEALFLTSSFVYDSAAHAADRFAGEIPGFVYSRYANPTVAAFEERIAALEGAERAVATAT   77 (380)
T ss_pred             CceeEECCCCC---CCCCCccCCeeCCcceecCCHHHHHHhhccccCCcceecCCCchHHHHHHHHHHHhCCCcEEEECC
Confidence            37789998632   236789999999999999998877665555556799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc
Q 013019          234 GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV  313 (451)
Q Consensus       234 G~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~  313 (451)
                      ||+|+.+++.+++++||+|+++++.|++++..+...+..+|+++.++|..|+++++++++++ +++|++|+|+||+|.+.
T Consensus        78 G~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~-tklV~le~p~np~g~~~  156 (380)
T TIGR01325        78 GMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPN-TKLVFVETPSNPLGELV  156 (380)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCCeee
Confidence            99999999999999999999999999999888877888899999999988999999999874 99999999999999999


Q ss_pred             cHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccH
Q 013019          314 DVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP  393 (451)
Q Consensus       314 DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~  393 (451)
                      |+++|.++|+++|+++|+|++|+.++.++++++|+|++++|+||+++|+++++||+++++++++++++......|..+++
T Consensus       157 dl~~I~~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p  236 (380)
T TIGR01325       157 DIAALAELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSP  236 (380)
T ss_pred             CHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCH
Confidence            99999999999999999999999888888999999999999999999999999999999999999998887788999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          394 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       394 ~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +++|+++++++++..|++++.+|+++++++|++||+|++|+||++++||++++.
T Consensus       237 ~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~  290 (380)
T TIGR01325       237 FNAWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELA  290 (380)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999998764

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=2.4e-49  Score=410.78  Aligned_cols=292  Identities=33%  Similarity=0.530  Sum_probs=266.2

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...   ..++++.+|||++++|.|++.++..+.+.++..+|.|+||++|+...||++||+++|.+.++++
T Consensus        10 ~~~t~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~Le~~lA~l~G~~~~~~~   86 (398)
T PRK07504         10 RPATRLVHSGTLR---SQFGETSEALFLTQGFVYDTAEAAEARFKGEDPGFIYSRYSNPTVDMFEKRMCALEGAEDARAT   86 (398)
T ss_pred             CcccceeeCCCCC---CCCCCCcCCeECCCCccCCCHHHHHHHhccCcCCceeecCCCchHHHHHHHHHHHhCCCeeeEe
Confidence            4679999999632   2367899999999999999988776655555567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++++.|+++...+...++.+|+++++++..|+++++++++++ |++|++|+|+||+|.
T Consensus        87 ~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~-tklV~lesp~NptG~  165 (398)
T PRK07504         87 ASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPN-TKVFFLESPTNPTLE  165 (398)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcC-ceEEEEECCCCCCcE
Confidence            9999999988888999999999999999998877777778889999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHH-HHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.++.+.++++|+|++++|+||+++|||+.+||+++++++++. +++......|..
T Consensus       166 v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~  245 (398)
T PRK07504        166 VIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPS  245 (398)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999888888899999999999999999999999999999887765 466666778999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++.+|+++++|+++..|++++.+|+++++++|++||+|.+|+||||++||++++.
T Consensus       246 ~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~  302 (398)
T PRK07504        246 LSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADII  302 (398)
T ss_pred             CCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999997664

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=3.6e-49  Score=409.76  Aligned_cols=293  Identities=34%  Similarity=0.590  Sum_probs=267.7

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      .++|+++|.|...+  ..++++++|+|++++|.+++.+++.+.+..+..+|.|+||++|+...||++|++++|.++++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~~   85 (400)
T PRK06234          8 GFATKAIHGGHIGD--KQFGSLATPIYQTSTFIFDSAEQGGRRFAGEESGYIYSRLGNPTSTEVENKLALLEGGEAAVVA   85 (400)
T ss_pred             CccchheECCCCCC--CCCCCccCCcccccceecCChHHHHHhhccCcCCCcccCCCCccHHHHHHHHHHHhCCCcEEEE
Confidence            36799999996532  3468999999999999999988766655444457889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++++.|+.++..+...++..|+++.++|..|+++++++++++ +++|++|+|+||+|.
T Consensus        86 ~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~-tklI~iesP~NPtG~  164 (400)
T PRK06234         86 ASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKAN-TKVVYLETPANPTLK  164 (400)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccC-CeEEEEECCCCCCCC
Confidence            9999999999999999999999999999999888877788899999999999999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhc--CCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH--hHhh
Q 013019          312 CVDVKLVSDLCHKK--GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--HHVL  387 (451)
Q Consensus       312 v~DL~~IaelA~~~--g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~--~~~~  387 (451)
                      +.|+++|.++|+++  |+++|+|++|+.++...++.+|+|++++|+||+++|++++++|+++++++++++++..  +..+
T Consensus       165 v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~  244 (400)
T PRK06234        165 VTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMT  244 (400)
T ss_pred             cCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhc
Confidence            99999999999997  9999999999999888888889999999999999999999999999999998888753  4467


Q ss_pred             CCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       388 G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      |..++++++|+++++|++++.|++++.+|+++++++|++||.|.+|+||+|++||++++.
T Consensus       245 g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~  304 (400)
T PRK06234        245 GSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELA  304 (400)
T ss_pred             CCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHH
Confidence            889999999999999999999999999999999999999999999999999999998763

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.1e-49  Score=406.37  Aligned_cols=284  Identities=35%  Similarity=0.606  Sum_probs=259.3

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|...+  ..+++++||||+++||.+++.+        +..+|.|+|++||+...||++|++++|.+.++++
T Consensus         2 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~~~   71 (377)
T PRK07671          2 RAKTKLIHGGIIGD--PSTGAVSVPIYQVSTYKQEAVG--------KHQGYEYSRTGNPTRAALEELIAVLEGGHAGFAF   71 (377)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCCCC--------CcCCCCcCCCCChHHHHHHHHHHHHhCCCceEEe
Confidence            46899999996532  3368999999999999888642        2346899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+..++ .++++||+|+++++.|++++..+...+..+|+++.+++..|+++++++++++ |++|++|+|+||+|.
T Consensus        72 ~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~-tklV~le~P~NPtg~  149 (377)
T PRK07671         72 GSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPN-TKAIYVETPTNPLLK  149 (377)
T ss_pred             CCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence            99999887765 6889999999999999998888777778899999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.++.++++.+|+|++++|+||+++||+|+++|+++. +++++++++..+...|..
T Consensus       150 ~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~  229 (377)
T PRK07671        150 ITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGI  229 (377)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999888888899999999999999999999989998776 467889999988888999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++++|+++++++++..|++++++|++.|++||++||+|.+|+||+|++||++.+.
T Consensus       230 ~~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~  286 (377)
T PRK07671        230 LGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELA  286 (377)
T ss_pred             CCHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999998764

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=3.5e-49  Score=405.06  Aligned_cols=280  Identities=32%  Similarity=0.521  Sum_probs=249.4

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      .++|+++|.|...+  ..+++++||||+|+||.|++.        ++..+|.|+|++||+..+||++|++++|+++++++
T Consensus         6 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~--------~~~~~~~Y~R~~~p~~~~le~~lA~leg~~~~v~~   75 (364)
T PRK07269          6 HINTILAQAGIKSD--EATGALVTPLHFSTTYQHPEF--------GQSTGFDYTRTKNPTRAKLEETLAAIESADYALAT   75 (364)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCCC--------CCcCCcceeCCCCccHHHHHHHHHHHhCCCeEEEe
Confidence            36799999996532  236899999999999998863        22347999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+.+++ .++++||+||++.+.|+++..++.......++++++.  .|+++++++++++ ||+|++|+|+||+|.
T Consensus        76 ~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~i~~~-TklV~lesP~NPtg~  151 (364)
T PRK07269         76 SSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYA--NTEEELIAAIEED-TDIVYIETPTNPLMV  151 (364)
T ss_pred             CCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEec--CCHHHHHHhcCcC-ceEEEEECCCCCCCe
Confidence            99999999888 4679999999999999999887766655556665553  5799999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|+++|+++|+++|+|+||++++.++|+.+|+|++++|+||+++||+|+++|+|+++ +++.++++..+...|..
T Consensus       152 ~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~  231 (364)
T PRK07269        152 EFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAV  231 (364)
T ss_pred             eeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999988999999999999999999999999999998874 67888888877788999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcccccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGFM  450 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~f~  450 (451)
                      ++++++|+++++|++|..|++++++|++++++||++||.|.+|+||++     .++++|.
T Consensus       232 ~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~-----gg~~sf~  286 (364)
T PRK07269        232 LSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGK-----GGMISFK  286 (364)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCc-----CcEEEEE
Confidence            999999999999999999999999999999999999999999999986     4555553

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=6e-49  Score=411.23  Aligned_cols=293  Identities=30%  Similarity=0.436  Sum_probs=261.9

Q ss_pred             ccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 013019          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (451)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~s  232 (451)
                      ++|+++|.|...+  ..+++++||||+++||.|++.+++.+.+..+..++.|+|.++|+...||++|++++|.+.+++++
T Consensus         8 ~~t~~~~~~~~~~--~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~~~   85 (427)
T PRK05994          8 FATLAVHAGAQPD--PTTGARATPIYQTTSFVFNDADHAASLFGLQAFGNIYTRITNPTNAVLEERVAALEGGTAALAVA   85 (427)
T ss_pred             cchhheECCcCCC--CCCCCccCCCcCCCCcccCCHHHHHHhhccccCCcceECCCCccHHHHHHHHHHHhCCCcEEEEc
Confidence            6799999996532  23578999999999999999887776655444568999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccc
Q 013019          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (451)
Q Consensus       233 SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v  312 (451)
                      |||+|+.+++.+++++||+||++.+.|+++...+...+...|+++.++|..|+++++++++++ +++|++|+|+||+|.+
T Consensus        86 SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~-tklV~vesp~NptG~v  164 (427)
T PRK05994         86 SGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPR-TKAIFIESIANPGGTV  164 (427)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCee
Confidence            999999999999999999999999999999888877778899999999998999999999874 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH------------------
Q 013019          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG------------------  374 (451)
Q Consensus       313 ~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~------------------  374 (451)
                      .|+++|.++|+++|+++|+|+++++++.++++++|+|++++|+||+++||+|.+||+++...                  
T Consensus       165 ~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~  244 (427)
T PRK05994        165 TDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRP  244 (427)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999988522                  


Q ss_pred             H-----HHHH----------HHHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCC
Q 013019          375 K-----LVTQ----------IRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLL  439 (451)
Q Consensus       375 e-----li~~----------lr~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~  439 (451)
                      +     +.+.          ........|..+++++||+++++|++|+.|++++++|++.++++|++||+|++|+||+|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~  324 (427)
T PRK05994        245 EYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLP  324 (427)
T ss_pred             hhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCC
Confidence            1     1111          112344678999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccc
Q 013019          440 CFYNGTLVG  448 (451)
Q Consensus       440 ~~p~~~lv~  448 (451)
                      +||++++..
T Consensus       325 ~~~~~~~~~  333 (427)
T PRK05994        325 DDPYHALAQ  333 (427)
T ss_pred             CCccHHHHH
Confidence            999987753

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.3e-48  Score=406.11  Aligned_cols=286  Identities=33%  Similarity=0.522  Sum_probs=261.1

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||++++|.|++..        ...+|.|+|+++|+.+.||++|++++|+++++++
T Consensus        12 ~~~t~~~~~~~~~~--~~~~~~~~pi~~ss~~~~~~~~--------~~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~   81 (405)
T PRK08776         12 SAATAAVRAGIDRD--TAYGAVTPPIVLSSNFSFDGFG--------NKRQYDYTRSGNPTRDLLGEALAELEGGAGGVIT   81 (405)
T ss_pred             CccchheeCCCCCC--CCCCCccCCEeccceEEeCCCC--------cccCCcccCCCChHHHHHHHHHHHHhCCCceEEE
Confidence            37799999996542  3468999999999999988732        1236899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+.+++.+++++||+|+++.+.|++++.++...+...|+++..++..|+++|++++++ ++++|++|+|+||+|.
T Consensus        82 ~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-~tklV~l~~P~NPtG~  160 (405)
T PRK08776         82 ATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQ-SPKLVLIETPSNPLLR  160 (405)
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCCc
Confidence            999999999999999999999999999999988887777788999999998899999999987 4999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.+..++|+++|+|++++|+||+++||+++++|++++ ++++.++++..+...|..
T Consensus       161 v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~  240 (405)
T PRK08776        161 ITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLT  240 (405)
T ss_pred             cCCHHHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999988888999999999999999999999999998877 567888888877788888


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVG  448 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~  448 (451)
                      ++++++|+++++++++..|++++.+|+..++++|++||.|++|+||+|++||++++..
T Consensus       241 ~s~~~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~  298 (405)
T PRK08776        241 GSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAA  298 (405)
T ss_pred             CCHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988653

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=1.2e-48  Score=411.33  Aligned_cols=283  Identities=31%  Similarity=0.556  Sum_probs=255.6

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+   .+++++||||+++||.+++..        +...|.|+|++||++++||+++++++|.+.++++
T Consensus        86 ~~~t~~~~~~~~~~---~~~~~~~Pi~~sst~~~~~~~--------~~~~~~Y~r~gnpt~~aLE~~lA~leg~e~ai~~  154 (464)
T PLN02509         86 SVSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF  154 (464)
T ss_pred             CcchHheeCCCCCC---CCCCccCCccccceecCcccc--------ccCCCccCCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence            37899999996532   357999999999999887631        2246899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+.+++ .++++||+||++++.|+++..++...+...|+++.+++..|+++++++++++ +++|++|+|+||+|.
T Consensus       155 ~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~-TklV~lesPsNPtG~  232 (464)
T PLN02509        155 TSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQ-TKLVWLESPTNPRQQ  232 (464)
T ss_pred             CcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcC-CeEEEEECCCCCCCC
Confidence            99999986655 6789999999999999999888877778889999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|+++|+++|+++|+|++++.++.++++.+|+|++++|+|||++||+|+++|++++++ ++.++++..+...|..
T Consensus       233 i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~  312 (464)
T PLN02509        233 ISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG  312 (464)
T ss_pred             HHHHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999888999999999999999999999999999998754 4566677777777888


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++++|+++++|+++..|++++++|+++++++|++||.|++|+||||++||++.+.
T Consensus       313 l~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~  369 (464)
T PLN02509        313 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLH  369 (464)
T ss_pred             cCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999998763

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=1.1e-48  Score=401.73  Aligned_cols=276  Identities=45%  Similarity=0.749  Sum_probs=259.8

Q ss_pred             CCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCC
Q 013019          171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG  250 (451)
Q Consensus       171 ~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD  250 (451)
                      ++++||||+|+||.|++.+++.+.+.++..++.|+|+++|+.++||++|++++|.+++++++||++|+..++.+++++||
T Consensus         1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~~~gd   80 (369)
T cd00614           1 GAVAPPIYQTSTFVFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGD   80 (369)
T ss_pred             CCcCCCccCCCceecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHcCCCC
Confidence            36889999999999999998887776666779999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEE
Q 013019          251 HIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC  330 (451)
Q Consensus       251 ~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lV  330 (451)
                      +|+++.+.|++++..+...++..|+++.+++..|++++++++++ ++++|++|+|+||+|.+.|+++|+++|+++|+++|
T Consensus        81 ~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~li  159 (369)
T cd00614          81 HVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLV  159 (369)
T ss_pred             EEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE
Confidence            99999999999998887777888999999999899999999987 49999999999999999999999999999999999


Q ss_pred             EecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHHH
Q 013019          331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR  409 (451)
Q Consensus       331 VD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~R  409 (451)
                      +|++|+.++.++++++|+|++++|+||+++||+++++|++++++ +++++++..+..+|..++++.+|+++++++++..|
T Consensus       160 vD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~r  239 (369)
T cd00614         160 VDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLPLR  239 (369)
T ss_pred             EECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHHHH
Confidence            99999999888899999999999999999999999999999987 89999998888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          410 VQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       410 l~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++.+|+++++++|+++|+|.+|+||+|++||++++.
T Consensus       240 ~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~  277 (369)
T cd00614         240 MERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELA  277 (369)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHH
Confidence            99999999999999999999999999999999987654

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=1.1e-48  Score=403.38  Aligned_cols=282  Identities=35%  Similarity=0.582  Sum_probs=253.2

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|.++|.|...+  ..++++++|||+++||.|++.++.....+....+|.|+|++||+.++||+++++++|++.++++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~~   85 (384)
T PRK06434          8 GFNTRAVQSGELRD--PRFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMPYIYTRWGNPTVQAFEEKYAVLENAEHALSF   85 (384)
T ss_pred             CcccceeECCCCCC--CCCCCccCCeeCCcceecCChHHhhhccccccCCcceeCCCChhHHHHHHHHHHHhCCCcEEEe
Confidence            47899999996532  3468999999999999999987654322222346999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+||.+++.+++++||+||++...|++++.++...+..+|+++.++|..+.+.++  ++++++++|++|+|+||++.
T Consensus        86 sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~snpt~~  163 (384)
T PRK06434         86 SSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLNSLD--FDPSNYDLIYAESITNPTLK  163 (384)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChhhee--ecCCCeeEEEEEcCCCCCce
Confidence            9999999999999999999999999999999999888888999999999987656655  55545999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|+++||++|  +++|+|+++++.++|+.+|+|++++|.||+++||+|++||+++++ +++.++++..+..+|..
T Consensus       164 v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~  241 (384)
T PRK06434        164 VPDIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSN  241 (384)
T ss_pred             eecHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCC
Confidence            999999999999998  567999999999999999999999999999999999999999874 56778888777788999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCC
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLL  439 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~  439 (451)
                      +++++||+++++|++++.|++++++|+++++++|++||.|++|+||||+
T Consensus       242 ~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~  290 (384)
T PRK06434        242 PDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE  290 (384)
T ss_pred             CCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH
Confidence            9999999999999999999999999999999999999999999999995

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=2.4e-48  Score=401.73  Aligned_cols=282  Identities=32%  Similarity=0.525  Sum_probs=259.9

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+||++|+.++||++||+++|.++++++
T Consensus         5 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~   82 (386)
T PRK06767          5 HMETALIHHGYTSE--EHKGSLTPPLFQTSTFTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAF   82 (386)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCccceecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEE
Confidence            46899999996532  2468999999999999999998888777666667999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++++.|++++..+.......|+++.+++..|+++++++++++ +++|++|+|+||+|.
T Consensus        83 ~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~-tklV~lesp~NptG~  161 (386)
T PRK06767         83 GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPN-TKLIFVETPINPTMK  161 (386)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcC-ceEEEEeCCCCCCce
Confidence            9999999999999999999999999999999888877777889999999888999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHH-HHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-NLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr-~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.++.+.++..|+|++++|+||+++|++++++|+++++++++++++ ..+..+|..
T Consensus       162 v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~  241 (386)
T PRK06767        162 LIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGI  241 (386)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999988888999999999999999999999988999999998887754 556668888


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yP  436 (451)
                      ++++++|+++++|+++..|++++.+|++.++++|+++|+|+.|+||
T Consensus       242 ~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p  287 (386)
T PRK06767        242 MAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP  287 (386)
T ss_pred             CCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence            9999999999999999999999999999999999999999999999

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=2.1e-48  Score=402.53  Aligned_cols=286  Identities=35%  Similarity=0.578  Sum_probs=260.6

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      .++|+++|.|...+  ..+++++||||+|+||.+++.++       ...+|.|+|+++|+...||++|++++|.+.++++
T Consensus        12 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~-------~~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~   82 (388)
T PRK07811         12 GFATRAIHAGYEPD--PATGAVNPPIYASSTFAQDGVGG-------LRGGYEYARTGNPTRTALEEQLAALEGGAYGRAF   82 (388)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccCCcceecCCccc-------ccCCCcccCCCCccHHHHHHHHHHHhCCCceEEe
Confidence            36899999996532  34689999999999999887432       1236899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+.+++.+++++||+|+++++.|++++..+...+..+|+++.+++..|+++|+++++++ +++|++|+|+||+|.
T Consensus        83 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~-tklV~ie~p~NPtg~  161 (388)
T PRK07811         83 SSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPR-TKLIWVETPTNPLLS  161 (388)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcC-CeEEEEECCCCCcce
Confidence            9999999999999999999999999999999888777777889999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.+..+.++.+|+|++++|++|+++||+++++|+++++ +++.++++..+...|..
T Consensus       162 ~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~  241 (388)
T PRK07811        162 ITDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAV  241 (388)
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999888888889999999999999999999899988875 67778888777778888


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++++|+++++|+++..|++++.+|++.++++|++||+|++|+||+|++||++++.
T Consensus       242 ~s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~  298 (388)
T PRK07811        242 PGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVA  298 (388)
T ss_pred             CCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHH
Confidence            999999999999999999999999999999999999999999999999999998764

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=3e-48  Score=405.05  Aligned_cols=292  Identities=35%  Similarity=0.570  Sum_probs=259.6

Q ss_pred             ccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 013019          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (451)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~s  232 (451)
                      ++|+++|.|...+  ..+++++||||+++||.|++.+++.+.+.....+|.|+|+++|+.++||++||+++|.+.+++++
T Consensus         2 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~   79 (418)
T TIGR01326         2 FETLQLHAGQEPD--PTTGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGNIYSRLMNPTTDVLEQRIAALEGGVAALAVA   79 (418)
T ss_pred             ccceeEECCCCCC--CCCCCccCCccCCCCeecCCHHHHHHhhccCcCCceeECCCChhHHHHHHHHHHHhCCCeEEEEc
Confidence            5688999996532  23578999999999999999987666554344568999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccc
Q 013019          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (451)
Q Consensus       233 SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v  312 (451)
                      |||+|+..++.+++++||+|+++++.|++++..+...+...|+++.+++..|+++++++++++ +++|++|+|+||+|.+
T Consensus        80 sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~-t~~V~le~p~NPtg~v  158 (418)
T TIGR01326        80 SGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDEN-TKAVFAETIGNPAINV  158 (418)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcC-CeEEEEECCCCCCCee
Confidence            999999999999999999999999999999888877788899999999988999999999874 9999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHH----------------
Q 013019          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL----------------  376 (451)
Q Consensus       313 ~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el----------------  376 (451)
                      .|+++|.++|+++|+++|+|++|+.++.+.++.+|+|++++|+||+++|+|+++||+++.++++                
T Consensus       159 ~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~  238 (418)
T TIGR01326       159 PDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPS  238 (418)
T ss_pred             cCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEecccccccccccccccCCCCc
Confidence            9999999999999999999999998888888888999999999999999999888888754321                


Q ss_pred             ---------------HHHHH-HHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCC
Q 013019          377 ---------------VTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLC  440 (451)
Q Consensus       377 ---------------i~~lr-~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~  440 (451)
                                     +.+.+ .....+|..++|+++|+++++++++..|++++.+|+..++++|.+||+|..|+||+|++
T Consensus       239 q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~  318 (418)
T TIGR01326       239 YHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLAS  318 (418)
T ss_pred             cccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCC
Confidence                           11112 23455688899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccc
Q 013019          441 FYNGTLV  447 (451)
Q Consensus       441 ~p~~~lv  447 (451)
                      ||++++.
T Consensus       319 ~~~~~~~  325 (418)
T TIGR01326       319 HPHHALA  325 (418)
T ss_pred             CccHHHH
Confidence            9998663

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=4.6e-48  Score=398.72  Aligned_cols=283  Identities=31%  Similarity=0.527  Sum_probs=257.3

Q ss_pred             ccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeC
Q 013019          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA  232 (451)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~s  232 (451)
                      ++|+++|.|...  . .+++++||||+++||.+++.+        +..+|.|+|+++|+.++||+++++++|.+++++++
T Consensus         1 ~~t~~~~~~~~~--~-~~~~~~~pi~~~~~~~~~~~~--------~~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~   69 (378)
T TIGR01329         1 LSTLLVNTDNKN--D-PYDASSMPIYQTATFKQPLAI--------ENGPYDYTRSGNPTRTALESLLAKLDKADRAFAFS   69 (378)
T ss_pred             CCceeEeCCCCC--C-CCCCcCCCeecCcceecCCcc--------ccCCCccCCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence            368889999542  2 368999999999999987632        12468999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccc
Q 013019          233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC  312 (451)
Q Consensus       233 SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v  312 (451)
                      ||++|+.+++. ++++||+|+++++.|+++..++...+..+|+++.++|..|++++++++++ ++++|++|+|+||+|.+
T Consensus        70 sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~-~tklv~le~psnptg~v  147 (378)
T TIGR01329        70 SGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGP-KTKLVLLESPTNPLQKI  147 (378)
T ss_pred             CHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCc-CceEEEEECCCCCCCee
Confidence            99999988665 88999999999999999888877777889999999999999999999987 49999999999999999


Q ss_pred             ccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCCc
Q 013019          313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGAL  391 (451)
Q Consensus       313 ~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~l  391 (451)
                      .|+++|+++||++|+++|+|++++.+..++++++|+|++++|++|+++||+++++|+++++ +++.++++..+...|..+
T Consensus       148 ~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~  227 (378)
T TIGR01329       148 VDIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGL  227 (378)
T ss_pred             ecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcC
Confidence            9999999999999999999999999988899999999999999999999998899999875 566688888877788899


Q ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcccc
Q 013019          392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVG  448 (451)
Q Consensus       392 s~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~  448 (451)
                      +++++|+++++++++..|++++.+|+..+++||++||.|++|+||+|++||++++++
T Consensus       228 ~~~~a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~  284 (378)
T TIGR01329       228 APFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHF  284 (378)
T ss_pred             CHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHH
Confidence            999999999999999999999999999999999999999999999999999988754

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=7.5e-48  Score=396.85  Aligned_cols=282  Identities=37%  Similarity=0.629  Sum_probs=258.1

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      |+++|.++|.|.+    ..+++++||||+++||.|++.           .+|.|+|.++|+.++||++||+++|.+.+++
T Consensus         1 ~~~~t~~~~~~~~----~~~~~~~~pi~~~~~~~~~~~-----------~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~   65 (376)
T PRK06460          1 MKDATRTVREDID----EATGAITTPIYQTTAYHYPEG-----------EKYRYSREANPTVLELTKKIVELENAEMGVA   65 (376)
T ss_pred             CCcceeeeecCCC----CCCCCccCCccCCcceeeCCC-----------CCcceeCCCCccHHHHHHHHHHHhCCCcEEE
Confidence            4689999999952    235789999999999998863           2589999999999999999999999989999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      +++|++|+..++.+++++||+|+++.+.|++++..+...++..|+++..++..+.+.+++.+++ ++++|++|+|+||+|
T Consensus        66 ~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~~~~l~~~~~~-~tklV~l~sp~NPtG  144 (376)
T PRK06460         66 FSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGSDNIIEKAKSK-RYDVVFVENITNPLL  144 (376)
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCCHHHHHHhcCC-CceEEEEECCCCCCC
Confidence            9999999999999999999999999999999998887788889999998887666666666555 599999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCC
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~  390 (451)
                      .+.|+++|.++|+++|+++|+|++|+.++...++..|+|++++|+||+++|++|.++|+++++++++++++..+..+|..
T Consensus       145 ~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~  224 (376)
T PRK06460        145 RVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTS  224 (376)
T ss_pred             cccCHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999887777778899999999999999999999999999999999999888888988


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVG  448 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~  448 (451)
                      +++..+|+++++++++..|++++.+|++.++++|++||.|++|+||+|++||++++..
T Consensus       225 ~~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~  282 (376)
T PRK06460        225 LDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIAR  282 (376)
T ss_pred             CCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987643

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=1.3e-47  Score=393.85  Aligned_cols=281  Identities=31%  Similarity=0.464  Sum_probs=250.5

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      .+.|+++|.|...+  ..+++++||||+++||.|++.        .+..+|.|+||++|+..+||++|++++ .++++++
T Consensus         3 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~--------~~~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~   71 (366)
T PRK07582          3 GDGTRSVHAGGPEA--VPGEPVLPGPVFAAPYHLSPG--------EPTGPDTYGRASNPTWRALEAALGELE-GAEALVF   71 (366)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCccccceEEccCc--------cccCCceeECCCCccHHHHHHHHHHHc-CCCEEEE
Confidence            36799999985432  236899999999999999842        123468899999999999999999999 6889999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++++.|+++..++...++.+|+++.+++..+...   .+.+ ++++|++|+|+||+|.
T Consensus        72 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~---~~~~-~t~lV~le~p~NPtg~  147 (366)
T PRK07582         72 PSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE---AALA-GADLVLAETPSNPGLD  147 (366)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH---Hhcc-CceEEEEECCCCCCCC
Confidence            99999999999999999999999999999988777666778899999998765332   2334 4899999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|+++|+++|+++|+|++|+.+..+.|+++|+|++++|+||+++||+++++|++++ +++++++++.++...|..
T Consensus       148 v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~  227 (366)
T PRK07582        148 VCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAI  227 (366)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998888888999999999999999999999999999987 478889999888888999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++++|+++++|+++..|++++++|++.++++|++||+|.+|+||+|++||++++.
T Consensus       228 ~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~  284 (366)
T PRK07582        228 PGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVA  284 (366)
T ss_pred             CCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999976543

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=3.8e-47  Score=393.31  Aligned_cols=284  Identities=34%  Similarity=0.532  Sum_probs=261.7

Q ss_pred             cccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHH
Q 013019          156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM  235 (451)
Q Consensus       156 ~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~  235 (451)
                      .++|++...   ..+++++||||+++||.|++.+++.+.+.++..+|.|+|+++|+.++||+++++++|.+.+++++|||
T Consensus        12 ~~~~~~~~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~   88 (389)
T PRK05968         12 ALITAHDEG---NAFDAVVPPIFQTSLFTFDSYDEMEDVYAGEKVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFASGM   88 (389)
T ss_pred             heeecCCCc---cCCCCccCCccCCcceecCCHHHHHHhhcCCCCCccccCCCChhHHHHHHHHHHHhCCCcEEEECCHH
Confidence            467887653   35789999999999999999988887776666679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccH
Q 013019          236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV  315 (451)
Q Consensus       236 aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL  315 (451)
                      +|+..++.+++++||+|+++.+.|++++..+...+...|+++.++|..|++++++++ + ++++|++|+|+|+++.+.|+
T Consensus        89 ~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl  166 (389)
T PRK05968         89 AAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL-P-GAKLLYLESPTSWVFELQDV  166 (389)
T ss_pred             HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc-c-cCCEEEEECCCCCCCcHHHH
Confidence            999999999999999999999999999988877788899999999998999999998 4 38999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-hhCCCccHH
Q 013019          316 KLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNPN  394 (451)
Q Consensus       316 ~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-~~G~~ls~~  394 (451)
                      ++|.++|+++|+++|+|++|+.+..++++.+|+|++++|+||+++||+++++|+++++++++++++..+. .+|..++++
T Consensus       167 ~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~  246 (389)
T PRK05968        167 AALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPF  246 (389)
T ss_pred             HHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChH
Confidence            9999999999999999999999887888899999999999999999998889999999999988886554 568889999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCC
Q 013019          395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNG  444 (451)
Q Consensus       395 ~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~  444 (451)
                      ++|+++++|+++..|++++.+++++++++|+++|+|+.|+||+|++||..
T Consensus       247 ~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~  296 (389)
T PRK05968        247 EAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPA  296 (389)
T ss_pred             HHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHH
Confidence            99999999999999999999999999999999999999999999999864

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=4.4e-47  Score=392.92  Aligned_cols=285  Identities=34%  Similarity=0.570  Sum_probs=260.8

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+  ..++++.+|||+++||.|++.++        ..+|.|+|.++|+.+.||++||+++|.+.++++
T Consensus         6 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~--------~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~   75 (390)
T PRK08064          6 SIDTLLLHNQYKHD--KQTGAVNVPIYHASTFHQFDFDT--------FGKYDYSRSGNPTREALEDIIAELEGGTKGFAF   75 (390)
T ss_pred             CcccceeeCCCCCC--CCCCCccCCcccCcceecCcccc--------cCCCcccCCCChhHHHHHHHHHHHhCCCCeEEE
Confidence            36799999996532  34689999999999999887542        246889999999999999999999999899999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||.|+..++. ++++||+||++++.|++++..+...++..|+++.+++..|+++++++++++ |++|++|+|+||+|.
T Consensus        76 ~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~-tklV~l~~p~NptG~  153 (390)
T PRK08064         76 ASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPN-TKLFYVETPSNPLLK  153 (390)
T ss_pred             CCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-ceEEEEECCCCCCcE
Confidence            999999988886 789999999999999999888877788899999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.+..+.++++|+|++++|+||+++||+++++|+++.+ ++++++++..+..+|..
T Consensus       154 ~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~  233 (390)
T PRK08064        154 VTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAV  233 (390)
T ss_pred             eccHHHHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999888888889999999999999999999889988765 68889999998889999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVG  448 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~  448 (451)
                      ++++++|+++++++++..|++++.+|+..+++||++||.|.+|+||+|++||++++..
T Consensus       234 ~~~~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~  291 (390)
T PRK08064        234 LGVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQ  291 (390)
T ss_pred             CCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987654

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=7.1e-47  Score=394.48  Aligned_cols=289  Identities=30%  Similarity=0.495  Sum_probs=258.6

Q ss_pred             ccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhccc----CCccccCCCchhHHHHHHHHHhhhCCCcE
Q 013019          153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRR----ASFEYGRYGNPTTVVVEEKMSALEGAEST  228 (451)
Q Consensus       153 ~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~----~~~~Y~R~~npt~~~Lee~LA~l~gae~~  228 (451)
                      ..++++|+|...+   .+++++||||+|+||.|++.+++.+.+.++.    .+|.|+|++||+.++||++||+++|.+.+
T Consensus        18 ~~~~~~~~~~~~~---~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~   94 (418)
T PLN02242         18 PAAALASARHEFG---EHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAA   94 (418)
T ss_pred             hHHHHhcCCCCCC---CCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeE
Confidence            5688999997643   2467899999999999999988887765542    35899999999999999999999999999


Q ss_pred             EEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhh-cCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCC
Q 013019          229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTN  307 (451)
Q Consensus       229 vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~-~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsN  307 (451)
                      ++++||++|+..++.+++++||+|+++++.|+++...+...+. ..|+++++++..|+++++++++++++++|++|+|+|
T Consensus        95 l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~lesp~N  174 (418)
T PLN02242         95 YCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISN  174 (418)
T ss_pred             EEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEEEecCCC
Confidence            9999999999999999999999999999999998877655543 479999999988999999999863499999999999


Q ss_pred             CccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--
Q 013019          308 PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--  385 (451)
Q Consensus       308 PtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--  385 (451)
                      |||.+.|+++|+++|+++|++||+|++|+ ++..++..+|+|++++|+||+++|++++++|+++++++++++++..+.  
T Consensus       175 PtG~v~dl~~I~~la~~~gi~livDea~~-~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~  253 (418)
T PLN02242        175 PTLTVADIPELARIAHEKGVTVVVDNTFA-PMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA  253 (418)
T ss_pred             CCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh
Confidence            99999999999999999999999999996 555677888999999999999999999999999999999998886643  


Q ss_pred             --hhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          386 --VLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       386 --~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                        ..|..+.+..+|+++++++++..|++++.+|++.++++|++++  .+|+||+|++||++.+.
T Consensus       254 ~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~--~~V~yP~l~~~p~~~~~  315 (418)
T PLN02242        254 LMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELG--LKVIYPGLEDHPQHALL  315 (418)
T ss_pred             hhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCC--CEEECCCCCCCccHHHH
Confidence              4677889999999999999999999999999999999999996  38999999999998764

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=1.5e-46  Score=385.69  Aligned_cols=277  Identities=32%  Similarity=0.556  Sum_probs=252.9

Q ss_pred             CCCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEE
Q 013019          150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV  229 (451)
Q Consensus       150 ~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~v  229 (451)
                      |++++|+++|.|...+  ..+++++||||+|+||.+++.+        +..+|.|+||+||+...||++|++++|.+.++
T Consensus         2 ~~~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~y~r~~~pt~~~le~~la~l~g~~~~~   71 (366)
T PRK08247          2 MSTIETKLAQIGNRSD--ERTGTVNPPVYFSTAYRHEGIG--------ESTGFDYSRTGNPTRGVLEQAIADLEGGDQGF   71 (366)
T ss_pred             CCCcchhheeCCCCCC--CCCCCccCCcccCcccccCCCC--------CcCCccccCCCCchHHHHHHHHHHHhCCCcEE
Confidence            3468899999996532  2468999999999999887632        23469999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCc
Q 013019          230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF  309 (451)
Q Consensus       230 v~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPt  309 (451)
                      +++|||+|+.+++ +++++||+|+++++.|++++..+...++.+|+++.++|..|+++++++++++ +++|++|+|+||+
T Consensus        72 ~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~-tklv~le~P~NP~  149 (366)
T PRK08247         72 ACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPN-TKAIFIETPTNPL  149 (366)
T ss_pred             EEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccC-ceEEEEECCCCCC
Confidence            9999999998765 6889999999999999999988887888899999999999999999999874 9999999999999


Q ss_pred             cccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhC
Q 013019          310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG  388 (451)
Q Consensus       310 G~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G  388 (451)
                      |.+.|+++|.++|+++|+++|+|++|+.++.+.|++.|+|++++|+||+++||+|+++|+++++ ++++++++..+...|
T Consensus       150 ~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g  229 (366)
T PRK08247        150 MQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAG  229 (366)
T ss_pred             CcHHHHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999988888888999999999999999999999999986 678888888888888


Q ss_pred             CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC
Q 013019          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       389 ~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                      ..++++++|+++++++++..|++++.+|++.++++|++||+|..|+||+.
T Consensus       230 ~~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~  279 (366)
T PRK08247        230 AVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGR  279 (366)
T ss_pred             CCCChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCc
Confidence            88999999999999999999999999999999999999999999999975

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.95  E-value=1.8e-26  Score=242.73  Aligned_cols=212  Identities=23%  Similarity=0.303  Sum_probs=180.9

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCC---CcchHHHHHHhhhcCCcEEEEeCC---C
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC---YRKTRIFIETVLPKMGITATVIDP---A  283 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~---Y~~t~~~l~~~l~~~Gi~v~~vd~---~  283 (451)
                      ...+.+|+.+++++|++++++++||++|+.+++. .+.+||+||+++..   |++++.+. ..++..|+++.+++.   .
T Consensus       122 ~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~-~l~~GdeVIvs~~e~v~~ggs~~i~-~~~~~~G~~~~~v~~~~~~  199 (454)
T TIGR00474       122 SRYSHVEGLLCELTGAEDALVVNNNAAAVLLALN-TLAKGKEVIVSRGELVEIGGSFRIP-DVMEQSGAKLVEVGTTNRT  199 (454)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-HhCCcCEEEECCChhhhhcchhhHH-HHHHHcCCEEEEeCCCCCC
Confidence            4468899999999999999999999999988884 57899999999876   66766653 456778999999875   5


Q ss_pred             CHHHHHHhhcCCCeEEEEEeCCCCCc--c--ccccHHHHHHHHHhcCCEEEEecCCC------------CCCccccccCC
Q 013019          284 DMEGLEAALNNNNVSLFFTESPTNPF--L--RCVDVKLVSDLCHKKGAIVCIDGTFA------------TPLNQKALSLG  347 (451)
Q Consensus       284 D~d~Le~ai~~~~tklV~lesPsNPt--G--~v~DL~~IaelA~~~g~~lVVD~tfa------------~~~~~~pl~~G  347 (451)
                      ++++++++++++ |++|++++++|++  |  .+.|+++|+++||++|+++++|++.+            .|..++++++|
T Consensus       200 ~l~dle~aI~~~-T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~G  278 (454)
T TIGR00474       200 HLKDYEDAITEN-TALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAG  278 (454)
T ss_pred             CHHHHHHhcCcC-CEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcC
Confidence            789999999885 9999999999995  4  68899999999999999999999732            23345778899


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHH---------H-------HHhHhhCCCccHHHHHHHHHhhHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI---------R-------NLHHVLGGALNPNAAYLIIRGMKTLHLRVQ  411 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~l---------r-------~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~  411 (451)
                      +|++++|.+|+++||.   +|++++++++++++         +       .+...+|..++++.+|+.+++|+++..|++
T Consensus       279 aDiv~fSg~K~LgGp~---~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~  355 (454)
T TIGR00474       279 VDLVTFSGDKLLGGPQ---AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPE  355 (454)
T ss_pred             CCEEEecCccccCCCe---EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHH
Confidence            9999999999999994   89999999887543         2       223456777889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcC
Q 013019          412 QQNSTALRMAEILEAH  427 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~  427 (451)
                      ++.++|++++++|++.
T Consensus       356 ~~~~~A~~la~~L~~~  371 (454)
T TIGR00474       356 ELRARAERLAKRLKAA  371 (454)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999875

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.94  E-value=2.3e-25  Score=234.93  Aligned_cols=213  Identities=24%  Similarity=0.349  Sum_probs=173.1

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCC---cchHHHHHHhhhcCCcEEEEeCC---C
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY---RKTRIFIETVLPKMGITATVIDP---A  283 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y---~~t~~~l~~~l~~~Gi~v~~vd~---~  283 (451)
                      +..+.+|+.+++++|++++++++||++|+.+++.+ +.+||+||+++..+   ++++.+ ...+...|+++.+++.   .
T Consensus       127 ~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~-l~~GdeVIvs~~e~~~~ggs~~i-~~~~~~~G~~l~~v~~~~~t  204 (464)
T PRK04311        127 SRDRALAALLCALTGAEDALVVNNNAAAVLLALNA-LAAGKEVIVSRGELVEIGGAFRI-PDVMRQAGARLVEVGTTNRT  204 (464)
T ss_pred             hHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHH-hCCCCEEEEcchhhhhcCcchhh-HHHHHHCCcEEEEECCCCCC
Confidence            44678999999999999999999999999988855 68999999998643   445543 3456778999888875   4


Q ss_pred             CHHHHHHhhcCCCeEEEEEeCCCCC----ccccccHHHHHHHHHhcCCEEEEecC---------C---CCCCccccccCC
Q 013019          284 DMEGLEAALNNNNVSLFFTESPTNP----FLRCVDVKLVSDLCHKKGAIVCIDGT---------F---ATPLNQKALSLG  347 (451)
Q Consensus       284 D~d~Le~ai~~~~tklV~lesPsNP----tG~v~DL~~IaelA~~~g~~lVVD~t---------f---a~~~~~~pl~~G  347 (451)
                      ++++++++|+++ |++|++++++||    ++...|+++|+++||+||+++++|+.         |   ..+..++++++|
T Consensus       205 ~~~dle~aI~~~-TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~G  283 (464)
T PRK04311        205 HLRDYEQAINEN-TALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAG  283 (464)
T ss_pred             CHHHHHHhcCcc-CeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcC
Confidence            688999999875 999999999998    34678999999999999999999994         3   234456778899


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHH--HhHhh---CCCcc-----------HHHHHHHHHhhHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVL---GGALN-----------PNAAYLIIRGMKTLHLRVQ  411 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~--~~~~~---G~~ls-----------~~~a~l~lrgL~tl~~Rl~  411 (451)
                      +|++++|.+|+++||.   +|+++++++++++++.  +.+.+   +..++           +..++..+++++++..|++
T Consensus       284 aDiv~fSg~K~LgGp~---~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~  360 (464)
T PRK04311        284 VDLVTFSGDKLLGGPQ---AGIIVGKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPE  360 (464)
T ss_pred             CcEEEecCcccccCCc---eEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHH
Confidence            9999999999999995   8999999999988773  11111   23333           4445555677888999999


Q ss_pred             HHHHHHHHHHHHHHcCC
Q 013019          412 QQNSTALRMAEILEAHP  428 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p  428 (451)
                      ++.++|++++++|++++
T Consensus       361 ~~~~~A~~la~~L~~~~  377 (464)
T PRK04311        361 ELRARAERLAAALKAAL  377 (464)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999999986

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.92  E-value=3.2e-23  Score=214.24  Aligned_cols=252  Identities=13%  Similarity=0.186  Sum_probs=187.3

Q ss_pred             CccccCCCccCCHHHHHHHHhcccC----CccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCe
Q 013019          176 PVVNTSAYFFKKTAELIDFKEKRRA----SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH  251 (451)
Q Consensus       176 Pi~~sst~~~~~~~~~~~~~~~~~~----~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~  251 (451)
                      ||-+.....-.-.+.+.++......    .+.+++...|..+++|+.+|+++|.++++++++|++++..++.+++++||+
T Consensus        25 ~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~~~gd~  104 (387)
T PRK09331         25 PIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLCKKGDY  104 (387)
T ss_pred             hhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcCCCCE
Confidence            4554444433333444444322111    345555667889999999999999998998889999999999999999999


Q ss_pred             EEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-------CCHHHHHHhhcCC------CeEEEEEeCCCCCccccccHHHH
Q 013019          252 IVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNN------NVSLFFTESPTNPFLRCVDVKLV  318 (451)
Q Consensus       252 VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-------~D~d~Le~ai~~~------~tklV~lesPsNPtG~v~DL~~I  318 (451)
                      |+++.+.|.+.+..    +...|+++.+++.       .|++++++++++.      ++++|++++|+|++|.+.|+++|
T Consensus       105 Vlv~~~~h~s~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I  180 (387)
T PRK09331        105 VVLDGLAHYTSYVA----AERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKV  180 (387)
T ss_pred             EEECCCchHHHHHH----HHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHH
Confidence            99999988876643    4556888887765       4789999988631      48999999999999999999999


Q ss_pred             HHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--------hhCC
Q 013019          319 SDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGG  389 (451)
Q Consensus       319 aelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--------~~G~  389 (451)
                      .++|+++|+++++|++++.+. ......+|+|+++.|++|++++++  .+|+++++++++++++....        .+|.
T Consensus       181 ~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~--~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~  258 (387)
T PRK09331        181 AKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASA--PSGVLATTEEYADKVFRTSRKFGVKEVELLGC  258 (387)
T ss_pred             HHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCC--CEEEEEECHHHHhhcccccCCCcccceeeece
Confidence            999999999999999998653 234446789999999999998764  58999999998887765432        1333


Q ss_pred             CccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          390 ALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      .+.+..++.++.+++   ....+++++.++++.+.+.|++.++++.+
T Consensus       259 ~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~  305 (387)
T PRK09331        259 TLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQL  305 (387)
T ss_pred             ecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            333222332233333   33345677788899999999999877543

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.92  E-value=5.5e-23  Score=210.00  Aligned_cols=222  Identities=13%  Similarity=0.219  Sum_probs=171.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC---
Q 013019          205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---  281 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd---  281 (451)
                      +...+|...+|++++++++|.++.+++++|++++..++.+++++||+|+++.+.|.+.+.    .+...|+++..++   
T Consensus        39 ~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~----~~~~~g~~~~~v~~~~  114 (361)
T cd06452          39 DEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYV----AAERAGLNVREVPNTG  114 (361)
T ss_pred             ccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHH----HHHhcCCEEEEEecCC
Confidence            334568899999999999999877777778899999999999999999999998887653    3456788887764   


Q ss_pred             ----CCCHHHHHHhhcC------CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcE
Q 013019          282 ----PADMEGLEAALNN------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADL  350 (451)
Q Consensus       282 ----~~D~d~Le~ai~~------~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDi  350 (451)
                          ..|++++++++++      .++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+. .....++|+|+
T Consensus       115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~  194 (361)
T cd06452         115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADF  194 (361)
T ss_pred             CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCE
Confidence                2378899988862      248999999999999999999999999999999999999987653 23445678999


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--------hCCCccHHHHHHHHHhhHHHH---HHHHHHHHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------LGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALR  419 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--------~G~~ls~~~a~l~lrgL~tl~---~Rl~~~~~nA~~  419 (451)
                      ++.|+||++++++  ++|+++++++++++++..+..        +|.......++.++.+++.+.   .++.+..+++++
T Consensus       195 ~~~s~~K~l~~~~--~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  272 (361)
T cd06452         195 IVGSGHKSMAASA--PIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARW  272 (361)
T ss_pred             EEecCCccccCCC--CeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998654  689999999999988765432        222222222333344444332   344555567789


Q ss_pred             HHHHHHcCCCeEE
Q 013019          420 MAEILEAHPKVLL  432 (451)
Q Consensus       420 Lae~L~~~p~V~~  432 (451)
                      +.+.|++.|+++.
T Consensus       273 l~~~L~~l~g~~v  285 (361)
T cd06452         273 FVAELEKIEGIKQ  285 (361)
T ss_pred             HHHHHhcCCCeEE
Confidence            9999999988744

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.91  E-value=7.4e-23  Score=212.30  Aligned_cols=219  Identities=17%  Similarity=0.189  Sum_probs=168.2

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~  283 (451)
                      |+|..  +..+||+++|+++|.+++++++||+.|+..++.+++++||+|+++++.|+++...+    ...+.++.+++..
T Consensus        39 yg~~~--~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~----~l~~~~~~~~~~~  112 (392)
T PLN03227         39 YGTID--AHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGV----SLSRANVRWFRHN  112 (392)
T ss_pred             cCChH--HHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHHHH----HHcCCeEEEeCCC
Confidence            66654  78999999999999999999999999999999999999999999999999876543    2224566666666


Q ss_pred             CHHHHHH---hhcC----------CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc---------
Q 013019          284 DMEGLEA---ALNN----------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------  341 (451)
Q Consensus       284 D~d~Le~---ai~~----------~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~---------  341 (451)
                      |.+++++   .+++          .++++|++|+|.||+|.+.|+++|.++|++||+++|+||+++.+...         
T Consensus       113 d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~  192 (392)
T PLN03227        113 DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEH  192 (392)
T ss_pred             CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHH
Confidence            6655554   3321          24899999999999999999999999999999999999998754322         


Q ss_pred             ---ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh--HhhCCCccHHHHHHHHHhhHHH---HHHHHHH
Q 013019          342 ---KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQ  413 (451)
Q Consensus       342 ---~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~--~~~G~~ls~~~a~l~lrgL~tl---~~Rl~~~  413 (451)
                         .| ..|+|+++.|+||+++.    ++|++++++++++.++...  ..++..++|..++.++..++.+   +.++++.
T Consensus       193 ~g~~p-~~~~Div~~slsk~~g~----~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l  267 (392)
T PLN03227        193 AGLKP-MVHAEIVTFSLENAFGS----VGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRL  267 (392)
T ss_pred             cCCCC-CCCceEEEeechhhhhc----cCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence               22 24789999999999863    4788889998887766432  2456666787766665555432   4567788


Q ss_pred             HHHHHHHHHHHHc--CCCeEEE
Q 013019          414 NSTALRMAEILEA--HPKVLLL  433 (451)
Q Consensus       414 ~~nA~~Lae~L~~--~p~V~~V  433 (451)
                      .++.+.+.+.|++  +|.|..|
T Consensus       268 ~~~~~~l~~~L~~~~~~~~~~~  289 (392)
T PLN03227        268 HDSIANLYSTLTNSSHPYALKL  289 (392)
T ss_pred             HHHHHHHHHHHHhcCCcccccc
Confidence            8889999999874  4444333

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.91  E-value=5.2e-22  Score=206.01  Aligned_cols=222  Identities=19%  Similarity=0.256  Sum_probs=164.5

Q ss_pred             chhHHHHHHHHHhh----hC----CCc-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          209 NPTTVVVEEKMSAL----EG----AES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       209 npt~~~Lee~LA~l----~g----ae~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      .....+|++++++.    +|    .++ .++++++++|+..++++++.+||+||+++|.|......+    ...|.++..
T Consensus        64 ~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~----~~~gg~~v~  139 (393)
T COG0436          64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAV----KLAGGKPVP  139 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHH----HhcCCEEEE
Confidence            33344566666554    44    234 455555559999999999999999999999999866433    445666555


Q ss_pred             eCC--------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----cc
Q 013019          280 IDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA  343 (451)
Q Consensus       280 vd~--------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~p  343 (451)
                      ++.        .|+++|++++++ +||+|++++||||||.+.+   +++|+++|++||++||.|++|......     ..
T Consensus       140 v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~  218 (393)
T COG0436         140 VPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSI  218 (393)
T ss_pred             EeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCH
Confidence            542        268999999998 5999999999999999986   788999999999999999998654322     11


Q ss_pred             ccC-C---CcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCCccHHHHHHHHHhhH------HHHHHHHH
Q 013019          344 LSL-G---ADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQ  412 (451)
Q Consensus       344 l~~-G---aDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~------tl~~Rl~~  412 (451)
                      ++. +   .-|+++|+||.++.+|. +.||++++ +++++.+.+.+.....+.+...++.+...|+      .+....+.
T Consensus       219 ~~~~~~~~~~i~i~s~SK~~~mtGw-RvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~  297 (393)
T COG0436         219 LELAGARDRTITINSFSKTYGMTGW-RIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREE  297 (393)
T ss_pred             hhcCCCcceEEEEeccccccccccc-ceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            222 1   24889999999998874 68999988 8888988888777776666666555554443      33333467


Q ss_pred             HHHHHHHHHHHHHcCCCeEEEecC
Q 013019          413 QNSTALRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~p~V~~V~yP  436 (451)
                      ..++++.+.+.|.+.+++..+.+|
T Consensus       298 ~~~rrd~l~~~l~~~~g~~~~~~p  321 (393)
T COG0436         298 YRERRDLLVEALNEIGGLSVVKPP  321 (393)
T ss_pred             HHHHHHHHHHHHHhcCCeeeccCC
Confidence            788899999999998877665433

>PRK07324 transaminase; Validated

Probab=99.90  E-value=5.8e-22  Score=203.95  Aligned_cols=223  Identities=16%  Similarity=0.215  Sum_probs=164.0

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      ..|+..  .....|++.|+++++.   ++.++++++++|+..++.+++++||+|+++.|.|....    ..++..|.++.
T Consensus        56 ~~Y~~~--~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~----~~~~~~g~~v~  129 (373)
T PRK07324         56 LTYGWI--EGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLY----DIPESLGAEVD  129 (373)
T ss_pred             ccCCCC--CCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHH----HHHHHcCCEEE
Confidence            455532  2345799999998752   45555555669999999999999999999999998754    34456687777


Q ss_pred             EeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc-c---c
Q 013019          279 VIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-A---L  344 (451)
Q Consensus       279 ~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~-p---l  344 (451)
                      .++.       .|++++++++++ ++|+|++++|+||||.+.+   +++|+++|++||+++|+|++|....... .   .
T Consensus       130 ~v~~~~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~  208 (373)
T PRK07324        130 YWQLKEENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIA  208 (373)
T ss_pred             EEecccccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChh
Confidence            6652       378999998877 4999999999999999998   8899999999999999999986532211 1   1


Q ss_pred             cC-CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---HHHH-HHHHHHHHHH
Q 013019          345 SL-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLR-VQQQNSTALR  419 (451)
Q Consensus       345 ~~-GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---l~~R-l~~~~~nA~~  419 (451)
                      +. ...|++.|+||.++.+| .+.||++++++++++++..+.....+.+.+..+++...++.   +..+ .+...++...
T Consensus       209 ~~~~~~I~~~s~SK~~~~~G-~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~  287 (373)
T PRK07324        209 DLYEKGISTNSMSKTYSLPG-IRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAI  287 (373)
T ss_pred             hccCCEEEEecchhhcCCcc-ceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            11 23488999999998776 57899999999999999887655444555555555444432   2222 3444567778


Q ss_pred             HHHHHHcCCCeEE
Q 013019          420 MAEILEAHPKVLL  432 (451)
Q Consensus       420 Lae~L~~~p~V~~  432 (451)
                      +.++|++++.+..
T Consensus       288 l~~~l~~~~~~~~  300 (373)
T PRK07324        288 LDEWVAKEPRVSY  300 (373)
T ss_pred             HHHHHhcCCCceE
Confidence            8889988877654

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.90  E-value=1.2e-21  Score=203.68  Aligned_cols=214  Identities=16%  Similarity=0.226  Sum_probs=156.9

Q ss_pred             hHHHHHHHHHhhhCC---C-cEEEeCC-HHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          211 TTVVVEEKMSALEGA---E-STVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       211 t~~~Lee~LA~l~ga---e-~~vv~sS-G~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .++.+.+.+++.+|.   . +.+++++ +++++..++.+++++||+|++++|.|......    +...|.++..++.   
T Consensus        83 LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~----~~~~g~~v~~v~~~~~  158 (405)
T PRK06207         83 IRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL----VEFFEGEMVPVQLDYL  158 (405)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEEecccc
Confidence            455566666666673   2 4444554 55999999999999999999999999876543    4455666554432   


Q ss_pred             -------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc-c--
Q 013019          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-S--  345 (451)
Q Consensus       283 -------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl-~--  345 (451)
                             .|+++|+++++++ +++|++++|+||||.+++   +++|+++|+++|++||+|++|......    .++ .  
T Consensus       159 ~~~~~~~~d~~~l~~~~~~~-~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~  237 (405)
T PRK06207        159 SADKRAGLDLDQLEEAFKAG-VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALP  237 (405)
T ss_pred             CcccCCCcCHHHHHHhhhhc-CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCC
Confidence                   3789999998774 899999999999999996   778899999999999999998753211    111 1  


Q ss_pred             --CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 013019          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALR  419 (451)
Q Consensus       346 --~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA~~  419 (451)
                        ...-+++.|+||.++.+| ++.||++++++++++++..+..+....+.+....+...+    ..+..+++++.++...
T Consensus       238 ~~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~  316 (405)
T PRK06207        238 IDPENVITIMGPSKTESLSG-YRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDD  316 (405)
T ss_pred             CCcCcEEEEecchhhccCcc-cceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence              122389999999998666 679999999999999988776665555544444433333    3356667777778888


Q ss_pred             HHHHHHcCCCe
Q 013019          420 MAEILEAHPKV  430 (451)
Q Consensus       420 Lae~L~~~p~V  430 (451)
                      +.+.|++++++
T Consensus       317 l~~~L~~~~~~  327 (405)
T PRK06207        317 LLRVLRGVEGV  327 (405)
T ss_pred             HHHHHhcCCCc
Confidence            88999877654

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.90  E-value=1e-21  Score=200.17  Aligned_cols=222  Identities=14%  Similarity=0.238  Sum_probs=166.5

Q ss_pred             cccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      .+.+|+++....|++.++++++. ++.+++++|+ +++..++.+++++||+|++++|.|....    ..++..|.++..+
T Consensus        52 ~~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v  127 (351)
T PRK14807         52 QVNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYS----VYSKIAGAVEIPV  127 (351)
T ss_pred             cccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHH----HHHHHcCCeEEEe
Confidence            34567777778999999999986 3566666666 7889999999999999999999998543    2345567776665


Q ss_pred             CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc---c-cCCCcEE
Q 013019          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---L-SLGADLV  351 (451)
Q Consensus       281 d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p---l-~~GaDiV  351 (451)
                      +.     .|++++++++++.++++|++++|+||||.+.+.+++.+++++++.++|+|++|........   + .....++
T Consensus       128 ~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~  207 (351)
T PRK14807        128 KLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIV  207 (351)
T ss_pred             ecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEE
Confidence            42     4789999999754599999999999999999999999999998889999999865332111   1 1234589


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHcCCC
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--TLHLRVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~--tl~~Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      +.|+||.++.+| ++.||++++++++++++..+..+  .++......+...++  .+..+++...++...+.+.|++.++
T Consensus       208 ~~S~SK~~~~~G-lRiG~~v~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g  284 (351)
T PRK14807        208 LRTLSKAFGLAG-LRVGYAVANENILKYLNLVKSPY--NINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPG  284 (351)
T ss_pred             EecchHhcccch-hceeeeecCHHHHHHHHHccCCC--CcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999998666 67899999999999888765432  234555444444443  3444556666777788888887777


Q ss_pred             eE
Q 013019          430 VL  431 (451)
Q Consensus       430 V~  431 (451)
                      +.
T Consensus       285 ~~  286 (351)
T PRK14807        285 IK  286 (351)
T ss_pred             cE
Confidence            53

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.89  E-value=1.3e-21  Score=201.00  Aligned_cols=214  Identities=13%  Similarity=0.167  Sum_probs=164.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC-----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~-----  283 (451)
                      +|....+++.+|+++|.+..+++++|++++..++.+++++||+|+++.+.|.+.+.    .++..|+++..++..     
T Consensus        50 ~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~----~~~~~g~~~~~~~~~~~~~~  125 (370)
T TIGR02539        50 KPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYV----AAERAGLNVKEVPHTGHPEY  125 (370)
T ss_pred             chHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHH----HHHHcCCEEEEEecCCcccC
Confidence            45778889999999999999999999999999999999999999999988877653    345678888777653     


Q ss_pred             --CHHHHHHhhcC------CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEEC
Q 013019          284 --DMEGLEAALNN------NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (451)
Q Consensus       284 --D~d~Le~ai~~------~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S  354 (451)
                        |+++|++++++      .++++|++++|+||+|.+.|+++|.++|+++|+++++|++|+.+. .......++|+++.|
T Consensus       126 ~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s  205 (370)
T TIGR02539       126 KVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGS  205 (370)
T ss_pred             CcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEee
Confidence              89999999863      248899999999999999999999999999999999999998753 223345678999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHhhC--------CCccHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHH
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--------GALNPNAAYLIIRGMKTLHL---RVQQQNSTALRMAEI  423 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G--------~~ls~~~a~l~lrgL~tl~~---Rl~~~~~nA~~Lae~  423 (451)
                      ++|++++++  +.|++++++++++.++.....+.        .......+..+...++....   +..+..++++++.+.
T Consensus       206 ~sK~~~~~g--~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~  283 (370)
T TIGR02539       206 GHKSMAASG--PCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAE  283 (370)
T ss_pred             CcccccCCC--CEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998654  47999999999998886554321        11111122222233333222   334455667789999


Q ss_pred             HHcCC
Q 013019          424 LEAHP  428 (451)
Q Consensus       424 L~~~p  428 (451)
                      |++.+
T Consensus       284 L~~~g  288 (370)
T TIGR02539       284 LEDIG  288 (370)
T ss_pred             HHhCC
Confidence            98874

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.89  E-value=7e-22  Score=202.39  Aligned_cols=224  Identities=17%  Similarity=0.242  Sum_probs=177.4

Q ss_pred             cccCCCchhHHHHHHHHHhhhC-C-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          203 EYGRYGNPTTVVVEEKMSALEG-A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~g-a-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      .+.||++|...+|++++++.+| . .+.|+.++|+ +.|..++++++.+||.|++..|+|+...    ..++..|.++..
T Consensus        50 ~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~----~~a~~~g~~~~~  125 (356)
T COG0079          50 KLNRYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYE----IAAQLAGAEVVK  125 (356)
T ss_pred             hhccCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHH----HHHHhcCCeEEE
Confidence            5889999999999999999999 4 4677778888 8999999999999999999999998644    345567877777


Q ss_pred             eCC----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCCcccccc----CCCc
Q 013019          280 IDP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQKALS----LGAD  349 (451)
Q Consensus       280 vd~----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~~~~pl~----~GaD  349 (451)
                      ++.    .|++.+.+++++ ++++||++|||||||...+.++|.+++...  +.+||+||+|........+.    ...-
T Consensus       126 v~~~~~~~d~~~~~~~~~~-~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nl  204 (356)
T COG0079         126 VPLKEFRLDLDAILAAIRD-KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNL  204 (356)
T ss_pred             ecccccccCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCE
Confidence            665    578899988887 499999999999999999988888887754  88999999987654422221    2224


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA-AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~-a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      +|+.||||.++..| ++.||+++++++++.+++.+..+..+..... +..+++.-+.+...+++..+.++++.+.|++++
T Consensus       205 ivlRTfSKa~gLAG-lRlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~  283 (356)
T COG0079         205 IVLRTFSKAFGLAG-LRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKALG  283 (356)
T ss_pred             EEEEecHHhhhcch-hceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            89999999999887 7899999999999999999988754332222 222233335667778888889999999999987


Q ss_pred             CeEEE
Q 013019          429 KVLLL  433 (451)
Q Consensus       429 ~V~~V  433 (451)
                       +..|
T Consensus       284 -~~~v  287 (356)
T COG0079         284 -LFGV  287 (356)
T ss_pred             -CCee
Confidence             5443

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.89  E-value=2.9e-21  Score=199.64  Aligned_cols=215  Identities=16%  Similarity=0.205  Sum_probs=162.6

Q ss_pred             hhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          210 PTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga----e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      +.++.+++.+++..|.    ++.+++++|. +++..++.+++++||+|++++|.|.....    .++..|+++..++.  
T Consensus        69 ~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~~~  144 (389)
T PRK05957         69 PLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEM----AITMAGCQPILVPTDD  144 (389)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHH----HHHhcCCEEEEeecCC
Confidence            4567788888888774    4456666555 89988888899999999999999987543    23456888777643  


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----ccc----cCC
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL----SLG  347 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~pl----~~G  347 (451)
                         .|+++++++++++ +++|++.+|+||||.+.+   +++|+++|+++|+++|+|++|......     .+.    ...
T Consensus       145 ~~~~d~~~l~~~i~~~-~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  223 (389)
T PRK05957        145 NYQLQPEAIEQAITPK-TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGN  223 (389)
T ss_pred             CCCcCHHHHHHhcCcC-ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccC
Confidence               4789999999874 999999999999999987   888999999999999999998643221     111    112


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~~Lae~  423 (451)
                      ..+++.|+||.++.+| .+.|++++++++++++.......+.+.+......+...++    .+...+++..++.+.+.+.
T Consensus       224 ~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~  302 (389)
T PRK05957        224 HTISLYSLSKAYGFAS-WRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKS  302 (389)
T ss_pred             cEEEEecchhhccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence            3588999999998777 5789999999999999887766655555555555444443    2444456667778888899


Q ss_pred             HHcCCCe
Q 013019          424 LEAHPKV  430 (451)
Q Consensus       424 L~~~p~V  430 (451)
                      |++++++
T Consensus       303 L~~~~~~  309 (389)
T PRK05957        303 LGQLQDR  309 (389)
T ss_pred             HHhcCCC
Confidence            9877654

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.88  E-value=4e-21  Score=200.39  Aligned_cols=215  Identities=15%  Similarity=0.162  Sum_probs=157.5

Q ss_pred             CCchhHHHHHHHHHhhh----C---C--CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          207 YGNPTTVVVEEKMSALE----G---A--ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~----g---a--e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      |+......|++.+++++    |   .  ++.|++++|+ +++..++.+++++||+|++++|.|.....    .++..|.+
T Consensus        78 Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~----~~~~~g~~  153 (410)
T PRK06290         78 YADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGT----HTKYYGGE  153 (410)
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHH----HHHHcCCE
Confidence            44445667788888764    3   2  2357777777 89999999999999999999999988654    34456777


Q ss_pred             EEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-c--c
Q 013019          277 ATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-K--A  343 (451)
Q Consensus       277 v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-~--p  343 (451)
                      +..++.       .|++++++++.+ ++++|++++|+||||.+++   +++|.++|+++|++||+|++|...... .  +
T Consensus       154 v~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s  232 (410)
T PRK06290        154 VYNLPLLEENNFLPDLDSIPKDIKE-KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLS  232 (410)
T ss_pred             EEEEecCCCcCCcCCHHHHHHhhcc-cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcC
Confidence            666542       278888888876 4999999999999999998   578888899999999999998753211 1  1


Q ss_pred             ---c--cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHH
Q 013019          344 ---L--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNS  415 (451)
Q Consensus       344 ---l--~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~  415 (451)
                         +  ....+|+++|+||.++.+| ++.||+++++++++.++..+..+....+.....++...|   +.+....++..+
T Consensus       233 ~~~~~~~~~~~I~i~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~  311 (410)
T PRK06290        233 FLSVPGAKEVGVEIHSLSKAYNMTG-WRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSR  311 (410)
T ss_pred             hhcCCCccccEEEEeechhhcCCch-hheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence               1  1135699999999998776 678999999999999887766554443333333333333   334444555667


Q ss_pred             HHHHHHHHHHcC
Q 013019          416 TALRMAEILEAH  427 (451)
Q Consensus       416 nA~~Lae~L~~~  427 (451)
                      +...+.+.|+++
T Consensus       312 ~~~~l~~~L~~~  323 (410)
T PRK06290        312 RLDKLVKILNEV  323 (410)
T ss_pred             HHHHHHHHHHhC
Confidence            788888888876

>PLN02721 threonine aldolase

Probab=99.88  E-value=4.2e-21  Score=194.18  Aligned_cols=221  Identities=20%  Similarity=0.273  Sum_probs=166.5

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~-~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      +.+|...+||++|++++|.+..+++++|++++..++.++++ +||+|++++++|...+... ..+...|+++.+++.   
T Consensus        37 ~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~  115 (353)
T PLN02721         37 GYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GISTLGGVHPRTVKNNED  115 (353)
T ss_pred             CCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhhhcCceeEecCCCcC
Confidence            34677899999999999998899999999888888888787 9999999999986554310 134456888777652   


Q ss_pred             --CCHHHHHHhhcC------CCeEEEEEeCC-CCCcccccc---HHHHHHHHHhcCCEEEEecCCCCC------Cccccc
Q 013019          283 --ADMEGLEAALNN------NNVSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP------LNQKAL  344 (451)
Q Consensus       283 --~D~d~Le~ai~~------~~tklV~lesP-sNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~------~~~~pl  344 (451)
                        .|++++++++++      .++++|+++++ +||+|.+.|   +++|.++|+++|+++|+|+++...      .....+
T Consensus       116 ~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~  195 (353)
T PLN02721        116 GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRL  195 (353)
T ss_pred             CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHH
Confidence              479999999972      24899999885 678999876   789999999999999999986422      111222


Q ss_pred             cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 013019          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRMAE  422 (451)
Q Consensus       345 ~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~--~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae  422 (451)
                      ..++|.++.|+||+++++   .||++++++++++.+...+...+..+..  ..+...+.+++....++++..++++.+.+
T Consensus       196 ~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~  272 (353)
T PLN02721        196 VKAADSVSVCLSKGLGAP---VGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQENVPKLEDDHKKAKLLAE  272 (353)
T ss_pred             hhhCCEEEEecccccCCc---eeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            337899999999999875   3566788999998887776655544322  22334445666666667777788889999


Q ss_pred             HHHcCCCeE
Q 013019          423 ILEAHPKVL  431 (451)
Q Consensus       423 ~L~~~p~V~  431 (451)
                      .|++++++.
T Consensus       273 ~L~~~~~~~  281 (353)
T PLN02721        273 GLNQIKGLR  281 (353)
T ss_pred             HHHhCCCcE
Confidence            999888764

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.88  E-value=4e-21  Score=199.10  Aligned_cols=212  Identities=13%  Similarity=0.115  Sum_probs=154.7

Q ss_pred             hhHHHHHHHHHhhhC------C-C-cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          210 PTTVVVEEKMSALEG------A-E-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       210 pt~~~Lee~LA~l~g------a-e-~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +....|++.|+++++      . . +.+++++|+ +++..++.+++++||+|++++|+|.....    .+...|+++..+
T Consensus        69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v  144 (399)
T PRK07681         69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYET----GIQMAGATSYYM  144 (399)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHH----HHHhcCCEEEEE
Confidence            344567777776653      1 2 456666665 89999999999999999999999988653    345567777665


Q ss_pred             CC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----c-cc
Q 013019          281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-LS  345 (451)
Q Consensus       281 d~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----p-l~  345 (451)
                      +.       .|++++++++.+ ++++|++++|+||||.+++   +++|+++|+++|++||+|++|.......    + ..
T Consensus       145 ~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~  223 (399)
T PRK07681        145 PLKKENDFLPDLELIPEEIAD-KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLS  223 (399)
T ss_pred             ecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhh
Confidence            42       268889888876 4999999999999999997   7788889999999999999987432111    1 11


Q ss_pred             ----CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHH
Q 013019          346 ----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA  417 (451)
Q Consensus       346 ----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA  417 (451)
                          ....|++.|+||.++.+| ++.||++++++++++++..+.......+......+...+    +.+....+...++.
T Consensus       224 ~~~~~~~~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  302 (399)
T PRK07681        224 VPGAKEVGVEINSLSKSYSLAG-SRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERR  302 (399)
T ss_pred             CCCCcccEEEEeecccccCCcc-ceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence                123588999999998776 678999999999999988776555455555444444333    33444445556777


Q ss_pred             HHHHHHHHcC
Q 013019          418 LRMAEILEAH  427 (451)
Q Consensus       418 ~~Lae~L~~~  427 (451)
                      ..+.+.|+++
T Consensus       303 ~~l~~~L~~~  312 (399)
T PRK07681        303 DTLVDGFRTF  312 (399)
T ss_pred             HHHHHHHHHC
Confidence            7888888876

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.88  E-value=5.4e-21  Score=192.85  Aligned_cols=212  Identities=21%  Similarity=0.259  Sum_probs=167.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      .++..+.+++.+++++|.++.+++++|++++..++.+++++||+|+++++.|......    +...|+++..++..|.++
T Consensus        44 ~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~  119 (349)
T cd06454          44 TSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDG----IRLSGAKKRIFKHNDMED  119 (349)
T ss_pred             CchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHH----HHHcCCceEEecCCCHHH
Confidence            4688899999999999998899999999999988889999999999999998876533    345688888777778888


Q ss_pred             HHHhhcC----CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc---------ccccCCCcEEEEC
Q 013019          288 LEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHS  354 (451)
Q Consensus       288 Le~ai~~----~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~---------~pl~~GaDiVv~S  354 (451)
                      +++++++    .++++|++++|+||+|...|+++|.++|+++|+++|+|++++.+...         .....+.|+++.|
T Consensus       120 le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s  199 (349)
T cd06454         120 LEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGT  199 (349)
T ss_pred             HHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEee
Confidence            8888864    34789999999999999999999999999999999999998643211         1124578999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++|.+++.    +|+++++++++++++.....  .+..+++.....+...++.+   ..+.++..++++.+.+.|+++
T Consensus       200 ~sK~~~~~----gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  273 (349)
T cd06454         200 LGKAFGAV----GGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL  273 (349)
T ss_pred             chhhhccc----CCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999863    58888898888887765432  23345565555555555543   445667778888888888775

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.88  E-value=9.1e-21  Score=195.22  Aligned_cols=212  Identities=20%  Similarity=0.178  Sum_probs=159.7

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+...+||++||+++|.+++++++||++|+..++.+++++||+|+++++.|.+....+ ..   .+.....+...|+++|
T Consensus        82 ~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~-~~---~~~~~~~~~~~d~~~l  157 (393)
T TIGR01822        82 QDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGV-RL---CKAKRYRYANNDMADL  157 (393)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHH-Hh---cCCceEEeCCCCHHHH
Confidence            5667899999999999999999999999999999999999999999999999866443 22   2333333445788999


Q ss_pred             HHhhcC---C--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc-------cc--cCCCcEEEEC
Q 013019          289 EAALNN---N--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------AL--SLGADLVLHS  354 (451)
Q Consensus       289 e~ai~~---~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~-------pl--~~GaDiVv~S  354 (451)
                      ++++++   .  ++++|++++++||+|.+.|+++|.++|++||+++|+|++++.+....       ..  ..++|+++.|
T Consensus       158 ~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s  237 (393)
T TIGR01822       158 EAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGT  237 (393)
T ss_pred             HHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEE
Confidence            988874   1  48999999999999999999999999999999999999986443211       11  2257899999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +||+++|.   ++|++++++++++.++....  .++....+.....++..++.+   ....++..++.+.+.+.|++.
T Consensus       238 ~sK~l~g~---r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (393)
T TIGR01822       238 LGKALGGA---SGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA  312 (393)
T ss_pred             ChHHhhCC---CcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999875   48999999999988876432  223333444333333444333   334556677778888888764

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.88  E-value=8e-21  Score=195.45  Aligned_cols=217  Identities=16%  Similarity=0.214  Sum_probs=156.0

Q ss_pred             cCCCchh-HHHHHHHHHhhh----CC----CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          205 GRYGNPT-TVVVEEKMSALE----GA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       205 ~R~~npt-~~~Lee~LA~l~----ga----e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      .+|+.+. ...|++.+++++    |.    ++.+++++| ++++..++..++++||+|++++|+|.....    .++..|
T Consensus        61 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~----~~~~~G  136 (383)
T TIGR03540        61 HRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRI----GTLFAG  136 (383)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHH----HHHhcC
Confidence            4455443 456777777764    32    335666655 599999999999999999999999988653    344567


Q ss_pred             cEEEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc---
Q 013019          275 ITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---  341 (451)
Q Consensus       275 i~v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~---  341 (451)
                      .++..++.       .|++++++++.+ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|......   
T Consensus       137 ~~v~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~  215 (383)
T TIGR03540       137 GEPYEMPLKEENGFLPDFDAIPEDIAK-KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYK  215 (383)
T ss_pred             CEEEEEecCcccCCccCHHHHHhhccc-cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCC
Confidence            77665542       268899888876 4999999999999999998   688999999999999999998643211   


Q ss_pred             ----cccc--CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHH
Q 013019          342 ----KALS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQ  411 (451)
Q Consensus       342 ----~pl~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~  411 (451)
                          ..+.  ....+++.|+||.++.+| ++.||+++++++++++...+...+...+......+...+    +.+....+
T Consensus       216 ~~~~~~~~~~~~~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  294 (383)
T TIGR03540       216 APSFLEVDGAKDVGIEFHSLSKTYNMTG-WRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRK  294 (383)
T ss_pred             CcCcccCCCcccCEEEEEecccccCCcc-ceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHH
Confidence                1111  123578899999998666 678999999999998887765554444443333333333    33444455


Q ss_pred             HHHHHHHHHHHHHHcC
Q 013019          412 QQNSTALRMAEILEAH  427 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~  427 (451)
                      +..++...+.+.|+++
T Consensus       295 ~~~~~~~~~~~~L~~~  310 (383)
T TIGR03540       295 IYQRRRDLLLEALKKI  310 (383)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            6667788888999886

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.88  E-value=8.5e-21  Score=195.72  Aligned_cols=220  Identities=11%  Similarity=0.143  Sum_probs=157.8

Q ss_pred             cCCCchh-HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          205 GRYGNPT-TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       205 ~R~~npt-~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      .+|+++. ...|++.+++++    |    .++.++++++++|+..++.+++++||+|++++|+|......+    ...|.
T Consensus        60 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~----~~~g~  135 (384)
T PRK06348         60 TRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQI----EMVGG  135 (384)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHH----HHcCC
Confidence            4455544 356888888766    2    244555555559999999999999999999999999866444    34465


Q ss_pred             EEEEeC-----C--CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---
Q 013019          276 TATVID-----P--ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---  342 (451)
Q Consensus       276 ~v~~vd-----~--~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---  342 (451)
                      ++..++     .  .|+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|++||+|++|.......   
T Consensus       136 ~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~  214 (384)
T PRK06348        136 KPIILETYEEDGFQINVKKLEALITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFV  214 (384)
T ss_pred             EEEEecCCcCcCCcCCHHHHHHhhCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCcc
Confidence            555443     1  478999998876 4899999999999999986   6788888999999999999987543211   


Q ss_pred             c---cc--CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH----HHHHHHHH
Q 013019          343 A---LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQ  413 (451)
Q Consensus       343 p---l~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~  413 (451)
                      +   +.  .+..+++.|+||.++.+| ++.||++++++++++++..+.....+.+......+...+..    +....+..
T Consensus       215 ~~~~~~~~~~~vi~~~SfSK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  293 (384)
T PRK06348        215 PMATLAGMPERTITFGSFSKDFAMTG-WRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEF  293 (384)
T ss_pred             chhhcCCCcCcEEEEecchhccCCcc-ccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            1   11  234588999999998676 67999999999999888777655445556554444433322    22233445


Q ss_pred             HHHHHHHHHHHHcCCCe
Q 013019          414 NSTALRMAEILEAHPKV  430 (451)
Q Consensus       414 ~~nA~~Lae~L~~~p~V  430 (451)
                      .++.+.+.+.|++.+++
T Consensus       294 ~~r~~~~~~~L~~~~~~  310 (384)
T PRK06348        294 QKRLEYAYKRIESIPNL  310 (384)
T ss_pred             HHHHHHHHHHHhcCCCc
Confidence            56677788888877654

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.88  E-value=7.4e-21  Score=191.25  Aligned_cols=218  Identities=22%  Similarity=0.231  Sum_probs=165.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----C
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A  283 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----~  283 (451)
                      +.+..++|++.+++++|.++.+++++|++++..++.+++++||+|+++++.|...+... ......|+++..++.    .
T Consensus        30 ~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~  108 (338)
T cd06502          30 EDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAG-APEFLSGVKLLPVPGENGKL  108 (338)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCC-cHHHHcCceEEeecCCCCcC
Confidence            56889999999999999778889999999999999999999999999999987654221 112235777777754    5


Q ss_pred             CHHHHHHhhcC------CCeEEEEEeCCCCCcc--ccccHHHHHHHHHhcCCEEEEecCCCC------CCccccccCCCc
Q 013019          284 DMEGLEAALNN------NNVSLFFTESPTNPFL--RCVDVKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGAD  349 (451)
Q Consensus       284 D~d~Le~ai~~------~~tklV~lesPsNPtG--~v~DL~~IaelA~~~g~~lVVD~tfa~------~~~~~pl~~GaD  349 (451)
                      |+++|++++++      .++++|++++|+||.+  ...|+++|+++|+++|+++|+|++|..      +.....+..++|
T Consensus       109 d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d  188 (338)
T cd06502         109 TPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVD  188 (338)
T ss_pred             CHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCC
Confidence            78999999874      1489999999999844  234678899999999999999998632      111122335789


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCC--CccHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAAYLIIRGMKT--LHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~--~ls~~~a~l~lrgL~t--l~~Rl~~~~~nA~~Lae~L~  425 (451)
                      +++.|+||++++++   |++++++++++++++.....+|.  ..++..++.++..|+.  ...++++..++++++.+.|+
T Consensus       189 ~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~  265 (338)
T cd06502         189 SVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALE  265 (338)
T ss_pred             EEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999775   56677889999998877655543  2445555666666654  44566778888899999998


Q ss_pred             cCCC
Q 013019          426 AHPK  429 (451)
Q Consensus       426 ~~p~  429 (451)
                      +++.
T Consensus       266 ~~~~  269 (338)
T cd06502         266 ELGG  269 (338)
T ss_pred             hcCC
Confidence            8653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.88  E-value=9.1e-21  Score=195.69  Aligned_cols=211  Identities=19%  Similarity=0.247  Sum_probs=169.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      .+|...+||+++++++|.+++++++||++|+.+++.++ +++||+||++++.|.++...    +...|+++.++|.    
T Consensus        31 ~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~----~~~~G~~~v~vd~~~~~  106 (379)
T PRK11658         31 TGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNM----IVLLGATPVMVDVDRDT  106 (379)
T ss_pred             CCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHH----HHHcCCEEEEEecCCCc
Confidence            46899999999999999999999999999999999999 89999999999999987643    3456888888763    


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---cccCCCcEEEECCcc
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---ALSLGADLVLHSATK  357 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---pl~~GaDiVv~S~SK  357 (451)
                        .|+++++++++++ +++|+   |+|++|.+.|+++|.++|+++|+++|+|++++.+....   ....|.++...+.+|
T Consensus       107 ~~~d~~~l~~~i~~~-tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K  182 (379)
T PRK11658        107 LMVTPEAIEAAITPR-TKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIK  182 (379)
T ss_pred             CCcCHHHHHHhcccC-CeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCCCC
Confidence              3789999999874 99987   67889999999999999999999999999987543222   234565555556668


Q ss_pred             cCCccccceeEEEEeC-HHHHHHHHHHhHh----------------------hC--CCccHHHHHHHHHhhHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV----------------------LG--GALNPNAAYLIIRGMKTLHLRVQQ  412 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~----------------------~G--~~ls~~~a~l~lrgL~tl~~Rl~~  412 (451)
                      .+.+.   .||+++++ +++.++++..+..                      .|  ..++.+.|.+.+..++.++...++
T Consensus       183 ~l~~g---~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~  259 (379)
T PRK11658        183 NITCA---EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNAR  259 (379)
T ss_pred             cCccc---CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            88664   48888875 6788887764421                      11  224566777777888889988999


Q ss_pred             HHHHHHHHHHHHHcCCC
Q 013019          413 QNSTALRMAEILEAHPK  429 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~p~  429 (451)
                      ..++++.+.+.|++.|.
T Consensus       260 r~~~a~~~~~~L~~~~~  276 (379)
T PRK11658        260 RREIAARYLQALADLPF  276 (379)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999999988763

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.88  E-value=5.1e-21  Score=196.58  Aligned_cols=221  Identities=19%  Similarity=0.191  Sum_probs=162.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCC---------------eEEEcCCCCcchHHHHHHhhhc
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG---------------HIVTTTDCYRKTRIFIETVLPK  272 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD---------------~VIv~~~~Y~~t~~~l~~~l~~  272 (451)
                      ..+..+++++++++++|.++++++++|++|+.+++.+++++||               +||++.+.|......+...+..
T Consensus        43 ~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~  122 (363)
T TIGR01437        43 IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRL  122 (363)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHh
Confidence            3466888999999999999999999999999999999999998               8888875553221111234455


Q ss_pred             CCcEEEEeCC---CCHHHHHHhhcCCCeEEEE-EeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCC
Q 013019          273 MGITATVIDP---ADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA  348 (451)
Q Consensus       273 ~Gi~v~~vd~---~D~d~Le~ai~~~~tklV~-lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~Ga  348 (451)
                      .|.++.+++.   .|+++++++|+++ |++|+ +++|+||+|.+.|+++|.++||++|+++++|++++..+ .....+|+
T Consensus       123 ~g~~~v~v~~~~~~d~~~le~ai~~~-t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-~~~~~~g~  200 (363)
T TIGR01437       123 GGGKVVEAGYANECSAEQLEAAITEK-TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-QKYYRLGA  200 (363)
T ss_pred             cCCeEEEEcCCCCCCHHHHHHhcChh-ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-HHHHHcCC
Confidence            6777777653   5899999999875 88655 68899999999999999999999999999999997433 23456789


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc--cHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTL----HLRVQQQNSTALRMAE  422 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l--s~~~a~l~lrgL~tl----~~Rl~~~~~nA~~Lae  422 (451)
                      |++++|+||++.|+.   +|++++++++++.++......+..+  .......+..+++.+    ..+++++.+++..+.+
T Consensus       201 D~~~~S~~K~l~gp~---~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~  277 (363)
T TIGR01437       201 DLVIYSGAKAIEGPT---SGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIE  277 (363)
T ss_pred             CEEEEeCCcccCCCc---eEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence            999999999998874   8999999888887754332222111  111111111222222    2335556667888999


Q ss_pred             HHHcCCCeEEE
Q 013019          423 ILEAHPKVLLL  433 (451)
Q Consensus       423 ~L~~~p~V~~V  433 (451)
                      .|++.|++...
T Consensus       278 ~L~~i~g~~~~  288 (363)
T TIGR01437       278 ALNTLKGVSAS  288 (363)
T ss_pred             HHhcCCCeEEE
Confidence            99999988654

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.88  E-value=2e-20  Score=192.78  Aligned_cols=216  Identities=15%  Similarity=0.182  Sum_probs=163.0

Q ss_pred             hhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          210 PTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      .....|++.|++++    |.    ++.++++++++|+..++.+++++||+|++++|+|.....    .++..|+++..++
T Consensus        68 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~~~  143 (393)
T PRK05764         68 AGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPE----MVKLAGGVPVFVP  143 (393)
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHH----HHHHcCCEEEEEe
Confidence            34577888888876    31    345555666799999999999999999999999987553    3455688777665


Q ss_pred             C-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----c---c
Q 013019          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A---L  344 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----p---l  344 (451)
                      .       .|++++++++++ ++++|++++|+||||.+.+   +++|.++|++||+++|+|++|+......    +   +
T Consensus       144 ~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  222 (393)
T PRK05764        144 TGEENGFKLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASL  222 (393)
T ss_pred             cCcccCCcCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHc
Confidence            3       257899999876 4899999999999999874   7889999999999999999986542211    1   1


Q ss_pred             ---cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 013019          345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA  417 (451)
Q Consensus       345 ---~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA  417 (451)
                         ..+.++++.|+||.++.+| .+.|+++++++++++++......+..+++..++.+.+.++    .+....++..++.
T Consensus       223 ~~~~~~~~i~~~s~SK~~~~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  301 (393)
T PRK05764        223 SPELRDRTITVNGFSKAYAMTG-WRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERR  301 (393)
T ss_pred             CCCCcCCEEEEecCcccccCcc-ceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence               1246799999999998776 5789999999999999887766665667777666655553    2333345556777


Q ss_pred             HHHHHHHHcCCCeE
Q 013019          418 LRMAEILEAHPKVL  431 (451)
Q Consensus       418 ~~Lae~L~~~p~V~  431 (451)
                      ..+.+.|++++++.
T Consensus       302 ~~l~~~L~~~~g~~  315 (393)
T PRK05764        302 DLMVDGLNEIPGLE  315 (393)
T ss_pred             HHHHHHHhhCCCCc
Confidence            88889999886653

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.87  E-value=2.4e-20  Score=191.27  Aligned_cols=214  Identities=17%  Similarity=0.210  Sum_probs=153.0

Q ss_pred             HHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          212 TVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       212 ~~~Lee~LA~l~g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      ++.+.+.+.+++|    .++.+++++|++++..++.+++++||+|++++|+|.....    .+...|+++..++.     
T Consensus        67 r~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~  142 (382)
T PRK06108         67 REALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVA----APKILGARVVCVPLDFGGG  142 (382)
T ss_pred             HHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHH----HHHHCCCEEEEeeCCCCCC
Confidence            3344444444446    2455555666799999999999999999999999987553    34556887766543     


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc---c-c--cc----C
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---K-A--LS----L  346 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~---~-p--l~----~  346 (451)
                         .|+++|++.+++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......   . +  ..    .
T Consensus       143 ~~~~d~~~l~~~~~~-~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~  221 (382)
T PRK06108        143 GWTLDLDRLLAAITP-RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPD  221 (382)
T ss_pred             CccCCHHHHHHhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCc
Confidence               368999998876 4899999999999998875   678999999999999999997654221   0 0  11    1


Q ss_pred             CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHH
Q 013019          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAE  422 (451)
Q Consensus       347 GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA~~Lae  422 (451)
                      ...+++.|+||.++.+| .+.|+++++++++++++..........+...+..+...|    +.+....++..++...+.+
T Consensus       222 ~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~  300 (382)
T PRK06108        222 DRIIFVNSFSKNWAMTG-WRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVD  300 (382)
T ss_pred             CCEEEEeechhhccCcc-cceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            24588999999997665 578999999999998887654444444555444333333    3344445566677788888


Q ss_pred             HHHcCCCeE
Q 013019          423 ILEAHPKVL  431 (451)
Q Consensus       423 ~L~~~p~V~  431 (451)
                      .|+++++++
T Consensus       301 ~L~~~~~~~  309 (382)
T PRK06108        301 ALRALPGVE  309 (382)
T ss_pred             HHHhCCCCc
Confidence            898876653

>PRK07179 hypothetical protein; Provisional

Probab=99.87  E-value=1.3e-20  Score=195.80  Aligned_cols=212  Identities=15%  Similarity=0.177  Sum_probs=164.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      +.+...+||++|++++|.+.+++++||++|+..++.++..+||+|+++...|.+....    +...|+++..++..|+++
T Consensus        97 ~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~----~~~~g~~~~~~~~~d~~~  172 (407)
T PRK07179         97 DDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEG----VRAAGAQAHPFRHNDVDH  172 (407)
T ss_pred             CchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHH----HHHCCCeEEEecCCCHHH
Confidence            4467889999999999999999999999999999999999999999988888765432    344577777777789999


Q ss_pred             HHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-------ccccc--CCCcEEEECCccc
Q 013019          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------QKALS--LGADLVLHSATKF  358 (451)
Q Consensus       288 Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-------~~pl~--~GaDiVv~S~SK~  358 (451)
                      |+++++++++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+..       ...+.  .++|+++.|++|.
T Consensus       173 l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~  252 (407)
T PRK07179        173 LRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKA  252 (407)
T ss_pred             HHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHh
Confidence            99999763478999999999999999999999999999999999999864321       11111  2469999999999


Q ss_pred             CCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          359 IGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~---lrgL~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +++.    +|++++++++++.++....  .++.+..+..+..+   ++.++....+.++..++...+.+.|++.
T Consensus       253 ~g~~----~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~  322 (407)
T PRK07179        253 FAGR----AGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSEL  322 (407)
T ss_pred             hhcc----CeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            9853    7999999888877765432  23444444443332   2333334456677888888888888875

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.87  E-value=1.2e-20  Score=194.81  Aligned_cols=217  Identities=13%  Similarity=0.176  Sum_probs=160.2

Q ss_pred             CchhHHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          208 GNPTTVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      +.+....|++++++++    |    .++.+++++|++|+..++.+++++||+|++++|+|.....    .+...|+++..
T Consensus        68 ~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~----~~~~~g~~~~~  143 (391)
T PRK08361         68 PNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVE----DAKIAEAKPIR  143 (391)
T ss_pred             CCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHH----HHHHcCCEEEE
Confidence            3445677888888876    3    2455666666799999999999999999999999988653    33446777665


Q ss_pred             eCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----cc--
Q 013019          280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA--  343 (451)
Q Consensus       280 vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~p--  343 (451)
                      ++.       .|+++++++++++ +++|++++|+||||.+.+   +++|.++|+++++++|+|++|......    .+  
T Consensus       144 v~~~~~~~~~~d~~~l~~~i~~~-~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  222 (391)
T PRK08361        144 IPLREENEFQPDPDELLELITKR-TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMI  222 (391)
T ss_pred             EecCCccCCCCCHHHHHHhcccc-cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHh
Confidence            532       4789999999874 899999999999999998   888999999999999999998653211    11  


Q ss_pred             -ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH------HHHHHHHHHHHH
Q 013019          344 -LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNST  416 (451)
Q Consensus       344 -l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~------tl~~Rl~~~~~n  416 (451)
                       .....++++.|+||.++.+| ++.|++++++++++++...........+.+...++...++      .+....++..++
T Consensus       223 ~~~~~~~i~~~s~SK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  301 (391)
T PRK08361        223 KYAPDNTILANSFSKTFAMTG-WRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNER  301 (391)
T ss_pred             hcCCCCEEEEecCchhcCCcH-hhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence             11235688999999998776 6789999999999988776654444455555444444332      233444555667


Q ss_pred             HHHHHHHHHcCCCe
Q 013019          417 ALRMAEILEAHPKV  430 (451)
Q Consensus       417 A~~Lae~L~~~p~V  430 (451)
                      ...+.+.|++.+++
T Consensus       302 ~~~~~~~L~~~~~~  315 (391)
T PRK08361        302 RKLVLKRLKEMPHI  315 (391)
T ss_pred             HHHHHHHHHhCCCC
Confidence            77788899887665

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.87  E-value=1.4e-20  Score=193.72  Aligned_cols=216  Identities=17%  Similarity=0.204  Sum_probs=153.7

Q ss_pred             CCCchh-HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          206 RYGNPT-TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~----ga----e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      +|+.+. ...|++++++++    |.    ++.+++++|+ +++..++.+++++||+|++++|+|.....    .++..|.
T Consensus        64 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~----~~~~~g~  139 (385)
T PRK09276         64 QYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKI----GTIFAGG  139 (385)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHH----HHHHcCC
Confidence            444433 456777777765    42    3346666665 99999999999999999999999987543    3345577


Q ss_pred             EEEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----
Q 013019          276 TATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  341 (451)
Q Consensus       276 ~v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----  341 (451)
                      ++..++.       .|++++++++.+ ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|......    
T Consensus       140 ~~~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~  218 (385)
T PRK09276        140 EPYFMPLKEENGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKP  218 (385)
T ss_pred             EEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCC
Confidence            6655432       267888888876 4999999999999999997   578888899999999999998643211    


Q ss_pred             cc---cc--CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHH
Q 013019          342 KA---LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQ  412 (451)
Q Consensus       342 ~p---l~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~  412 (451)
                      .+   +.  .+..+++.|+||.++.+| ++.||++++++++++++..+.......+...+..+...++    .+....++
T Consensus       219 ~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  297 (385)
T PRK09276        219 PSFLEVPGAKDVGIEFHSLSKTYNMTG-WRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKI  297 (385)
T ss_pred             CChhccCCCcCCEEEEecchhhcCCcc-hhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            11   11  134588999999998776 6789999999999998877665554444444333333332    23333455


Q ss_pred             HHHHHHHHHHHHHcC
Q 013019          413 QNSTALRMAEILEAH  427 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~  427 (451)
                      ..++...+.+.|+++
T Consensus       298 ~~~~~~~l~~~L~~~  312 (385)
T PRK09276        298 YQERRDILVEGLRKL  312 (385)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            566777888888875

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=1.2e-20  Score=194.82  Aligned_cols=218  Identities=13%  Similarity=0.152  Sum_probs=162.4

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+++....|+++|++++|. .+.|++++|+ +++..++.+++++||+|++++|.|+...    ..++..|+++..++
T Consensus        80 ~~~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~----~~~~~~g~~~~~v~  155 (380)
T PLN03026         80 PYVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYV----FDAAVNGAEVIKVP  155 (380)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEee
Confidence            3557777788999999999986 3556667766 8999999899999999999999997433    33455688877664


Q ss_pred             C-----CCHHHHHHhh-cCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-cc---c-cCCCcE
Q 013019          282 P-----ADMEGLEAAL-NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KA---L-SLGADL  350 (451)
Q Consensus       282 ~-----~D~d~Le~ai-~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~p---l-~~GaDi  350 (451)
                      .     .|+++|++++ ++ ++++|++++|+||||.+.+.+++.++++.. +++|+|++|...... ..   + .....+
T Consensus       156 ~~~~~~~d~~~l~~~~~~~-~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~vi  233 (380)
T PLN03026        156 RTPDFSLDVPRIVEAVETH-KPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLI  233 (380)
T ss_pred             cCCCCCcCHHHHHHHHhcc-CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEE
Confidence            3     3689999988 44 599999999999999999999999999865 899999998643211 11   1 123468


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++.|+||.++.+| ++.||++++++++++++..+..++  ++......+...|   +.+....+...++...+.+.|+++
T Consensus       234 v~~SfSK~~glaG-lRiGy~~~~~~~i~~l~~~~~~~~--~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~  310 (380)
T PLN03026        234 VLRTFSKRAGLAG-LRVGYGAFPLSIIEYLWRAKQPYN--VSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEV  310 (380)
T ss_pred             EEecchHhhcCcc-ccceeeecCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999998776 678999999999998887765443  4444444444444   333333455566777888889887


Q ss_pred             CCe
Q 013019          428 PKV  430 (451)
Q Consensus       428 p~V  430 (451)
                      +.+
T Consensus       311 ~~~  313 (380)
T PLN03026        311 PFL  313 (380)
T ss_pred             CCC
Confidence            654

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.87  E-value=2e-20  Score=190.55  Aligned_cols=216  Identities=19%  Similarity=0.223  Sum_probs=157.5

Q ss_pred             CCCchh-HHHHHHHHHhhh----CC---Cc-EEEeCCHH-HHHHHHHHHHccCC---CeEEEcCCCCcchHHHHHHhhhc
Q 013019          206 RYGNPT-TVVVEEKMSALE----GA---ES-TVIMASGM-SASTVMLLALVPAG---GHIVTTTDCYRKTRIFIETVLPK  272 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~----ga---e~-~vv~sSG~-aAi~~al~all~~G---D~VIv~~~~Y~~t~~~l~~~l~~  272 (451)
                      +|+.|. ...|++.+++++    |.   .+ .+++++|+ +++..++.+++++|   |+|++++|+|......    ++.
T Consensus        31 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~----~~~  106 (350)
T TIGR03537        31 QYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERG----ALF  106 (350)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHH----HHh
Confidence            345443 456777777764    52   22 56667666 89999999999887   6999999999986643    455


Q ss_pred             CCcEEEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc
Q 013019          273 MGITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK  342 (451)
Q Consensus       273 ~Gi~v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~  342 (451)
                      .|+++..++.       .|++++++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+......
T Consensus       107 ~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~  185 (350)
T TIGR03537       107 AGGEPTAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE  185 (350)
T ss_pred             cCCEEEEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC
Confidence            6777776643       278999998877 4999999999999999998   8899999999999999999987542221


Q ss_pred             c----c--cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHH
Q 013019          343 A----L--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQ  413 (451)
Q Consensus       343 p----l--~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~  413 (451)
                      +    .  .....+++.|+||.++.+| +++|+++++++++++++..+..++...+.....++...+   +.+..+.++.
T Consensus       186 ~~~~~~~~~~~~~i~~~s~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l  264 (350)
T TIGR03537       186 PPHSALEVGIENVLAFHSLSKRSGMTG-YRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIF  264 (350)
T ss_pred             CCCchhhcCcCCEEEEeecccccCCcc-ccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            1    1  1223488999999998776 678999999999999988776666555544333332222   3344445566


Q ss_pred             HHHHHHHHHHHHcC
Q 013019          414 NSTALRMAEILEAH  427 (451)
Q Consensus       414 ~~nA~~Lae~L~~~  427 (451)
                      .++...+.+.|+++
T Consensus       265 ~~~~~~~~~~l~~~  278 (350)
T TIGR03537       265 KRKRDLFIEFFNKV  278 (350)
T ss_pred             HHHHHHHHHHHHHC
Confidence            67777788888775

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=3.8e-21  Score=196.23  Aligned_cols=222  Identities=17%  Similarity=0.238  Sum_probs=163.3

Q ss_pred             cccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCC-CeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~G-D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      ..+||+++...+|++++++.+|. .+.|++++|+ +++..++.+++++| |+|++++|.|....    ..++..|+++..
T Consensus        50 ~~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~----~~~~~~G~~~~~  125 (351)
T PRK01688         50 TLNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYS----VSAETIGVEIRT  125 (351)
T ss_pred             ccccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHH----HHHHHcCCEEEE
Confidence            36788999889999999999996 3456666665 89999999999997 89999999997643    345567887776


Q ss_pred             eCC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh--cCCEEEEecCCCCCCccc-c---c-cCC
Q 013019          280 IDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQK-A---L-SLG  347 (451)
Q Consensus       280 vd~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~~-p---l-~~G  347 (451)
                      ++.     .|++++++++ + ++++|++++|+||||.+.+.++|.++++.  .+++||+||+|....... .   + ...
T Consensus       126 v~~~~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~  203 (351)
T PRK01688        126 VPTLDNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYP  203 (351)
T ss_pred             eecCCCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCC
Confidence            643     3688998888 3 48999999999999999987777776653  268999999986543211 1   1 123


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG-----MKTLHLRVQQQNSTALRMAE  422 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg-----L~tl~~Rl~~~~~nA~~Lae  422 (451)
                      .-+++.|+||.++.+| ++.|++++++++++.+++.+..+.  ++...+..+...     .+.+..+++...++.+.+.+
T Consensus       204 n~iv~rSfSK~~glaG-lRiGy~i~~~~~i~~l~~~~~~~~--v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~  280 (351)
T PRK01688        204 HLVILRTLSKAFALAG-LRCGFTLANEEVINLLLKVIAPYP--LSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIA  280 (351)
T ss_pred             CEEEEecchHhhcCHH-HHHhHHhCCHHHHHHHHhccCCCC--CCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999998666 678999999999999887665443  233222222222     34455666777778889999


Q ss_pred             HHHcCCCeEEE
Q 013019          423 ILEAHPKVLLL  433 (451)
Q Consensus       423 ~L~~~p~V~~V  433 (451)
                      .|++++++..+
T Consensus       281 ~L~~~~~~~~~  291 (351)
T PRK01688        281 ALKEIPCVEQV  291 (351)
T ss_pred             HHHhCCCCCeE
Confidence            99988766433

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.87  E-value=2.9e-20  Score=191.54  Aligned_cols=213  Identities=24%  Similarity=0.274  Sum_probs=170.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      .++....||+.+++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++..    .+...|+++.++|.    
T Consensus        27 ~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~----~~~~~G~~~~~~~~~~~~  102 (380)
T TIGR03588        27 QGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATAN----CALYCGAKVDFVDIDPDT  102 (380)
T ss_pred             CChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHH----HHHHcCCEEEEEecCCCc
Confidence            35788999999999999999999999999999999998 8999999999999987653    34567888888764    


Q ss_pred             --CCHHHHHHhhc----CCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCC----cEEE
Q 013019          283 --ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA----DLVL  352 (451)
Q Consensus       283 --~D~d~Le~ai~----~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~Ga----DiVv  352 (451)
                        .|+++++++++    + ++++|++   +|++|...|+++|.++|+++|++||+|++++.+...+....|.    |+++
T Consensus       103 ~~~d~~~l~~~i~~~~~~-~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~  178 (380)
T TIGR03588       103 GNIDEDALEKKLAAAKGK-LPKAIVP---VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATV  178 (380)
T ss_pred             CCcCHHHHHHHhhcccCC-CceEEEE---eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEE
Confidence              37899999998    4 4899885   6678999999999999999999999999987653222223344    9999


Q ss_pred             ECCc--ccCCccccceeEEEEeC-HHHHHHHHHHhHh-----------------------hC--CCccHHHHHHHHHhhH
Q 013019          353 HSAT--KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV-----------------------LG--GALNPNAAYLIIRGMK  404 (451)
Q Consensus       353 ~S~S--K~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~-----------------------~G--~~ls~~~a~l~lrgL~  404 (451)
                      .|++  |+++...   ||+++.+ +++.++++..+..                       .|  ..++...+.+.+..|+
T Consensus       179 ~S~~~~K~~~~~~---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~  255 (380)
T TIGR03588       179 FSFHPVKIITTAE---GGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLK  255 (380)
T ss_pred             EecCCCCcccccC---ceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHH
Confidence            9987  8887643   7877764 6677777654320                       11  2346666777777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          405 TLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       405 tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      .++.++++..++++.+.+.|.+.|.+.
T Consensus       256 ~l~~~~~~r~~~~~~~~~~L~~~~~~~  282 (380)
T TIGR03588       256 KLDRFVAKRREIAARYDRLLKDLPYFT  282 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            999999999999999999999888654

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK12414 putative aminotransferase; Provisional

Probab=99.87  E-value=6e-20  Score=189.53  Aligned_cols=211  Identities=15%  Similarity=0.179  Sum_probs=152.2

Q ss_pred             hHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          211 TTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       211 t~~~Lee~LA~l~ga-----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .++.+++.+++++|.     ++.+++++|++++..++.+++.+||+|++++|.|......    ++..|.++..++.   
T Consensus        71 lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~  146 (384)
T PRK12414         71 LREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPI----VRLQGATPVAIKLSPE  146 (384)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHH----HHHcCCEEEEEecCcc
Confidence            345566666666675     2466667777999999999999999999999999875533    3345666655542   


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCcc----cccc-----CC
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS-----LG  347 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~~----~pl~-----~G  347 (451)
                         .|+++|++++++ ++++|++++|+||||.++   ++++|+++|+++|+++|+|++|......    .++.     .+
T Consensus       147 ~~~~d~~~l~~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~  225 (384)
T PRK12414        147 DFRVNWDEVAAAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAE  225 (384)
T ss_pred             ccccCHHHHHhhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccC
Confidence               378999999876 499999999999999986   5788899999999999999998653211    1111     12


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA~~Lae~L  424 (451)
                      ..+++.|+||.++.+| ++.||+++++++++.++..........+...+.++...|+.   .....+...++...+.+.|
T Consensus       226 ~~i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L  304 (384)
T PRK12414        226 RSVIVSSFGKSYHVTG-WRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLAREL  304 (384)
T ss_pred             cEEEEecccccccCcc-ceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            3489999999998666 67899999999999888876544444444444444443321   2222345567777888888


Q ss_pred             HcC
Q 013019          425 EAH  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +++
T Consensus       305 ~~~  307 (384)
T PRK12414        305 AGS  307 (384)
T ss_pred             HhC
Confidence            876

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=1.8e-20  Score=192.34  Aligned_cols=223  Identities=19%  Similarity=0.231  Sum_probs=161.3

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCH-HHHHHHHHHHHccCC-CeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASG-MSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG-~aAi~~al~all~~G-D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ..||++|....|++.|++++|. .+.|++++| ++++..++.+++.+| |+|++++|.|+...    ..++..|.++..+
T Consensus        53 ~~~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~----~~~~~~g~~~~~v  128 (364)
T PRK04781         53 TRRYPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYA----VCARLQNAPLVEV  128 (364)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEE
Confidence            5678888888999999999986 335666666 589999999999999 79999999887433    2334567777666


Q ss_pred             CC--------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh--cCCEEEEecCCCCCCccc-c---cc-
Q 013019          281 DP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQK-A---LS-  345 (451)
Q Consensus       281 d~--------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~~-p---l~-  345 (451)
                      +.        .|++++++++...++++|++++|+||||.+.+.+++.++++.  +++++|+||+|....... +   .+ 
T Consensus       129 ~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~  208 (364)
T PRK04781        129 PLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLAR  208 (364)
T ss_pred             ecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhh
Confidence            43        256777555433358999999999999999998888888764  478999999987543211 1   11 


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh-----HHHHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRM  420 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL-----~tl~~Rl~~~~~nA~~L  420 (451)
                      ...-+++.|+||.++.+| ++.||+++++++++.+++.+..++.  +.....++...|     ..+..++++..++.+.+
T Consensus       209 ~~~vi~~~SfSK~~gl~G-lRvGy~v~~~~l~~~l~~~~~~~~~--~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l  285 (364)
T PRK04781        209 YDNLAVLRTLSKAHALAA-ARIGSLIANAELIAVLRRCQAPYPV--PTPCAALAEQALSAPALAVTARRVAEVRAERERL  285 (364)
T ss_pred             CCCEEEEecChhhccccc-ceeeeeeCCHHHHHHHHhccCCCCC--CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            123588999999998666 6789999999999999887765543  333323323333     34445566677788889


Q ss_pred             HHHHHcCCCeEEE
Q 013019          421 AEILEAHPKVLLL  433 (451)
Q Consensus       421 ae~L~~~p~V~~V  433 (451)
                      .+.|+++|++..+
T Consensus       286 ~~~L~~~~~~~~~  298 (364)
T PRK04781        286 HAALAQLPGVRRV  298 (364)
T ss_pred             HHHHHhCCCCCeE
Confidence            9999988765433

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.87  E-value=1.7e-20  Score=191.13  Aligned_cols=219  Identities=18%  Similarity=0.282  Sum_probs=163.1

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae--~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +.+|+.+...+|++.|++++|..  +.+++++|+ +++..++.+++++||+|++++|.|....    ..+...|+++..+
T Consensus        57 ~~~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~----~~~~~~g~~~~~i  132 (356)
T PRK04870         57 LNRYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYR----MSAKLAGLEFVGV  132 (356)
T ss_pred             cccCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHH----HHHHHcCCEEEEe
Confidence            34555666788999999999863  357777776 7888888889999999999999988644    3456678887776


Q ss_pred             CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---cc-cCCCcEE
Q 013019          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---AL-SLGADLV  351 (451)
Q Consensus       281 d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---pl-~~GaDiV  351 (451)
                      +.     .|+++|++++.+.++++|++++|+||||.+.+.+++.++++..++++|+|++|.......   .+ .....++
T Consensus       133 ~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~  212 (356)
T PRK04870        133 PLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLV  212 (356)
T ss_pred             cCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEE
Confidence            43     478999999865458999999999999999999988888887789999999986432111   11 1224588


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg---L~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      +.|+|| ++.+| .+.|+++++++++++++..+..+  .++....+.+...   .+.+...+++..++.+.+.+.|++.+
T Consensus       213 ~~S~SK-~~~~G-lRiG~~i~~~~~i~~~~~~~~~~--~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~  288 (356)
T PRK04870        213 MRTVSK-LGLAG-LRLGYLAGHPAWIAELDKVRPPY--NVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALP  288 (356)
T ss_pred             Eecchh-hhhHH-HhhhhhhCCHHHHHHHHHccCCC--cCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999 66665 67899999999999888765333  3444433333333   34455556677788888889998887


Q ss_pred             Ce
Q 013019          429 KV  430 (451)
Q Consensus       429 ~V  430 (451)
                      ++
T Consensus       289 ~~  290 (356)
T PRK04870        289 GV  290 (356)
T ss_pred             Cc
Confidence            76

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.87  E-value=3.4e-20  Score=191.89  Aligned_cols=219  Identities=15%  Similarity=0.182  Sum_probs=160.3

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEE-eCCHHHHHHHHHHHH----ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          210 PTTVVVEEKMSALEGA--ESTVI-MASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv-~sSG~aAi~~al~al----l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...+.+++++++++|.  .+.++ ++++++++..++.++    +++||+|+++++.|.+.+..+....+..|++++.++.
T Consensus        63 ~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  142 (401)
T PRK10874         63 ARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPL  142 (401)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEec
Confidence            3456788999999997  34455 455569999998887    4789999999999998765565666778998888753


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~S  356 (451)
                           .|+++++++++++ |++|++++|+||||.+.|+++|.++|+++|+++++|++++.+ ...+...+++|+++.|++
T Consensus       143 ~~~~~~d~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~  221 (401)
T PRK10874        143 GADRLPDVDLLPELITPR-TRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGH  221 (401)
T ss_pred             CCCCcCCHHHHHHhcCcC-cEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecc
Confidence                 3789999999874 999999999999999999999999999999999999998643 222223468999999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHHhH---------------------hhCCCccHHHHHHHHHhhHHHHH-----HH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTLHL-----RV  410 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~~~---------------------~~G~~ls~~~a~l~lrgL~tl~~-----Rl  410 (451)
                      |+++.+|   .|+++.++++++++..+..                     ...++.+......+..+++.+..     ..
T Consensus       222 K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~  298 (401)
T PRK10874        222 KLYGPTG---IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAE  298 (401)
T ss_pred             cccCCCc---cEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            9877665   6899999988877643210                     00112222233333334443321     23


Q ss_pred             HHHHHHHHHHHHHHHcCCCeEE
Q 013019          411 QQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      +++.+.+..+.+.|+++|+++.
T Consensus       299 ~~~~~l~~~l~~~l~~~~g~~~  320 (401)
T PRK10874        299 SWSRSLATLAEDALAKLPGFRS  320 (401)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEE
Confidence            4445567788888888888754

>PRK08960 hypothetical protein; Provisional

Probab=99.87  E-value=4.9e-20  Score=190.15  Aligned_cols=213  Identities=16%  Similarity=0.159  Sum_probs=153.3

Q ss_pred             hhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          210 PTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +....|++.++++++        .++.++++++++++..++.+++++||+|++++|+|......+    ...|.++..++
T Consensus        69 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~----~~~g~~~~~v~  144 (387)
T PRK08960         69 RGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFL----RLVEGAAQLVP  144 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHH----HhcCCeEEEEe
Confidence            345667787777752        244555555569999999999999999999999999876544    33455554443


Q ss_pred             C-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccccCC
Q 013019          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLG  347 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl~~G  347 (451)
                      .       .|+++++++++++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|......    ..+...
T Consensus       145 ~~~~~~~~~d~~~l~~~~~~~-~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~  223 (387)
T PRK08960        145 VGPDSRYQLTPALVERHWNAD-TVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVD  223 (387)
T ss_pred             cCcccCCCCCHHHHHHHhCcc-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhcc
Confidence            1       4688999988874 889999999999999987   556777899999999999998653211    111221


Q ss_pred             -CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHH
Q 013019          348 -ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       348 -aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL-----~tl~~Rl~~~~~nA~~La  421 (451)
                       ..+++.|+||.++.+| .+.|+++++++++++++..........+...+.++...+     +.+....++..++.+.+.
T Consensus       224 ~~vi~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~  302 (387)
T PRK08960        224 DDAFVLNSFSKYFGMTG-WRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLL  302 (387)
T ss_pred             CCEEEEeecccccCCcc-cEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence             2478899999998776 679999999999999888776555555555544333333     234344455667777888


Q ss_pred             HHHHcCC
Q 013019          422 EILEAHP  428 (451)
Q Consensus       422 e~L~~~p  428 (451)
                      +.|++++
T Consensus       303 ~~L~~~~  309 (387)
T PRK08960        303 PALRELG  309 (387)
T ss_pred             HHHHhcC
Confidence            8998764

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.87  E-value=2.6e-20  Score=190.40  Aligned_cols=218  Identities=19%  Similarity=0.230  Sum_probs=163.7

Q ss_pred             HHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHcc---CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          212 TVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       212 ~~~Lee~LA~l~gae---~~vv~sSG~aAi~~al~all~---~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      ..++++.+++++|.+   +.+++++|++++..++.++..   +||+|+++++.|.+.+..+....+..|+++.+++.   
T Consensus        45 ~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~  124 (373)
T cd06453          45 YEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDD  124 (373)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCC
Confidence            456889999999965   555666777999999999887   89999999999998765555555677888888754   


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEEEECCcccC
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S~SK~l  359 (451)
                        .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|++|++|++++.+... ...++|+|+++.|++|++
T Consensus       125 ~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  203 (373)
T cd06453         125 GQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKML  203 (373)
T ss_pred             CCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEecccccc
Confidence              378999999987 4999999999999999999999999999999999999998765432 223568999999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHhHh--------------------h-CCCccHHHHHHHHHhhHH-----HHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLHHV--------------------L-GGALNPNAAYLIIRGMKT-----LHLRVQQQ  413 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~~~--------------------~-G~~ls~~~a~l~lrgL~t-----l~~Rl~~~  413 (451)
                      ++.+   +|+++++++++++++.....                    + ...++......+..+++.     +..+.++.
T Consensus       204 ~~~g---~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~  280 (373)
T cd06453         204 GPTG---IGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHE  280 (373)
T ss_pred             CCCC---cEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            9854   78999999888776643210                    0 011222222222223332     33345666


Q ss_pred             HHHHHHHHHHHHcCCCeEEE
Q 013019          414 NSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       414 ~~nA~~Lae~L~~~p~V~~V  433 (451)
                      .+.++.+.+.|+++|+++.+
T Consensus       281 ~~~~~~l~~~l~~~~~~~~~  300 (373)
T cd06453         281 HELTAYALERLSEIPGVRVY  300 (373)
T ss_pred             HHHHHHHHHHHhcCCCeEEe
Confidence            67788888899988877654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.87  E-value=2.9e-20  Score=192.44  Aligned_cols=208  Identities=18%  Similarity=0.219  Sum_probs=148.6

Q ss_pred             HHHHHHHHhhh----CC-----CcEEEeCCHH-HHHHHHHHHHccC---CCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          213 VVVEEKMSALE----GA-----ESTVIMASGM-SASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       213 ~~Lee~LA~l~----ga-----e~~vv~sSG~-aAi~~al~all~~---GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      ..|++.|++++    |.     ++.+++++|. +++..++.+++++   ||.|++++|.|.....    .+...|+++..
T Consensus        68 ~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~----~~~~~g~~~~~  143 (396)
T PRK09147         68 PALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEG----AALLAGAEPYF  143 (396)
T ss_pred             HHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHH----HHHhcCCEEEE
Confidence            45666666643    52     2356666665 9999999999999   9999999999987553    34456777766


Q ss_pred             eCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---c---
Q 013019          280 IDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A---  343 (451)
Q Consensus       280 vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---p---  343 (451)
                      ++.       .|++++++.+.+ ++++|++++|+||||.+++   +++|+++|++|+++||+||+|.......   +   
T Consensus       144 vp~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  222 (396)
T PRK09147        144 LNCDPANNFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGL  222 (396)
T ss_pred             eccCccccCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchh
Confidence            642       368889887766 4999999999999999985   6788888999999999999987542111   1   


Q ss_pred             c----cCC-----CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHH
Q 013019          344 L----SLG-----ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQ  411 (451)
Q Consensus       344 l----~~G-----aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~  411 (451)
                      +    ..+     ..+++.|+||.++.+| ++.||+++++++++++...+...+..++......+...+   +.+....+
T Consensus       223 ~~~~~~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~  301 (396)
T PRK09147        223 LEAAAELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRA  301 (396)
T ss_pred             hhhccccCccccccEEEEeccccccCCcc-ceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHH
Confidence            1    112     2389999999888777 678999999999999887766555555555544433333   22333445


Q ss_pred             HHHHHHHHHHHHHHc
Q 013019          412 QQNSTALRMAEILEA  426 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~  426 (451)
                      +..++.+.+.+.|++
T Consensus       302 ~~~~~~~~~~~~L~~  316 (396)
T PRK09147        302 LYREKFDAVTPILAP  316 (396)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555666667777765

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.86  E-value=1.6e-20  Score=189.96  Aligned_cols=221  Identities=19%  Similarity=0.238  Sum_probs=162.2

Q ss_pred             CccccC-CCchh-HHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcC
Q 013019          201 SFEYGR-YGNPT-TVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       201 ~~~Y~R-~~npt-~~~Lee~LA~l~ga----e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      -..|+| ||.|. +..|.+++++++|.    ++.|++|+|. +++..++++++.+||+||+.+|.|.+.....    ...
T Consensus        62 ~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~----~ma  137 (420)
T KOG0257|consen   62 TNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQV----VMA  137 (420)
T ss_pred             hccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHH----hhc
Confidence            356777 46655 67789999998774    5556666666 9999999999999999999999998866433    233


Q ss_pred             CcEEEEeC-------------CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCC
Q 013019          274 GITATVID-------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT  337 (451)
Q Consensus       274 Gi~v~~vd-------------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~  337 (451)
                      |....++.             ..|.++++.+++++ ||+|++++|+||||++..   |++|+++|++||+++|.||+|.-
T Consensus       138 G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k-Tk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~  216 (420)
T KOG0257|consen  138 GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEK-TKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEW  216 (420)
T ss_pred             CCcceeeccccccccccCccccCChHHHHhhccCC-ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHH
Confidence            43333332             24899999999985 999999999999999985   88999999999999999999753


Q ss_pred             CCcc---------ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCC-CccHHH-HHHH--HHh--
Q 013019          338 PLNQ---------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG-ALNPNA-AYLI--IRG--  402 (451)
Q Consensus       338 ~~~~---------~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~-~ls~~~-a~l~--lrg--  402 (451)
                      .+..         .|..+...+.+.|++|+++..|+ +.||+++++.++..++..+...-. +..+.. |...  ..+  
T Consensus       217 ~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGW-rlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~  295 (420)
T KOG0257|consen  217 LVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGW-RLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELA  295 (420)
T ss_pred             HhhCCCcceeeecCCchhheEEEeccccceeeeeee-eeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhh
Confidence            2111         12223356889999999998884 678889988888888877654432 223332 1111  111  


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          403 ------MKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       403 ------L~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                            +.......+...++.+.|++.|.+.
T Consensus       296 ~~~p~~~y~~~~~~~~y~~krdil~k~L~~l  326 (420)
T KOG0257|consen  296 CLQPGGSYFITELVKEYKEKRDILAKALEEL  326 (420)
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  2344446677889999999999986

>PRK08068 transaminase; Reviewed

Probab=99.86  E-value=5.3e-20  Score=189.97  Aligned_cols=218  Identities=14%  Similarity=0.097  Sum_probs=155.7

Q ss_pred             ccCCC-chhHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcC
Q 013019          204 YGRYG-NPTTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       204 Y~R~~-npt~~~Lee~LA~l~----ga----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      +.+|+ .+....|++++++++    |.    + +.+++++|++++..++.+++++||+|++++|+|+.....    +...
T Consensus        63 ~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~----~~~~  138 (389)
T PRK08068         63 NHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSG----VALA  138 (389)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhc
Confidence            34453 445677888888876    42    3 344555555899999999999999999999999876533    3456


Q ss_pred             CcEEEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccH---HHHHHHHHhcCCEEEEecCCCCCCcc--
Q 013019          274 GITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ--  341 (451)
Q Consensus       274 Gi~v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL---~~IaelA~~~g~~lVVD~tfa~~~~~--  341 (451)
                      |+++..++.       .|++++++++++ ++++|++++|+||||.+++.   ++|.++|+++|+++|+|++|......  
T Consensus       139 g~~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~  217 (389)
T PRK08068        139 RAQFETMPLIAENNFLPDYTKIPEEVAE-KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQ  217 (389)
T ss_pred             CCEEEEeecccccCCCCCHHHHHHhccc-cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCC
Confidence            777665542       257889888876 48999999999999999975   67888899999999999998542111  


Q ss_pred             cc---cc----CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHH
Q 013019          342 KA---LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRV  410 (451)
Q Consensus       342 ~p---l~----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl  410 (451)
                      .+   +.    ....+++.|+||.++.+| ++.||++++++++++++.....+..+..+..+..+...+    +.+....
T Consensus       218 ~~~s~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~  296 (389)
T PRK08068        218 KPVSFLQTPGAKDVGIELYTLSKTFNMAG-WRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELV  296 (389)
T ss_pred             CCcChhhCCCccCCEEEEecchhccCCcc-ceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHH
Confidence            11   11    123489999999998776 678999999999999988776655444433322222222    3344445


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 013019          411 QQQNSTALRMAEILEAH  427 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~  427 (451)
                      ++..++...+.+.|+++
T Consensus       297 ~~~~~~r~~~~~~L~~~  313 (389)
T PRK08068        297 ARYESRRNAFISACREI  313 (389)
T ss_pred             HHHHHHHHHHHHHHHHC
Confidence            66667777888888876

>PRK07682 hypothetical protein; Validated

Probab=99.86  E-value=2.3e-20  Score=191.69  Aligned_cols=213  Identities=11%  Similarity=0.135  Sum_probs=154.3

Q ss_pred             chhHHHHHHHHHhhhC----C----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          209 NPTTVVVEEKMSALEG----A----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       209 npt~~~Lee~LA~l~g----a----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      .+....|+++++++++    .    + +.+++++|++|+..++.+++++||+|++++|+|+.....    +...|.++..
T Consensus        56 ~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~  131 (378)
T PRK07682         56 NAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPL----VTLAGGVPVP  131 (378)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHH----HHHcCCEEEE
Confidence            3456677777777663    2    3 344445556999999999999999999999999865433    3344555544


Q ss_pred             eC-------CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc------c
Q 013019          280 ID-------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------A  343 (451)
Q Consensus       280 vd-------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~------p  343 (451)
                      ++       ..|+++|++++.++ +++|++++|+||||.+++   +++|.++|+++|+++|+|++|.......      .
T Consensus       132 ~~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  210 (378)
T PRK07682        132 VATTLENEFKVQPAQIEAAITAK-TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFAS  210 (378)
T ss_pred             eecCCccCCCCCHHHHHhhcCcc-cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhh
Confidence            43       23789999998774 899999999999999975   8899999999999999999987543211      1


Q ss_pred             cc--CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 013019          344 LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA  417 (451)
Q Consensus       344 l~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA  417 (451)
                      +.  ....+++.|+||.++.+| .+.||++++++++++++..........+...+..+.+.|+    .+....+...++.
T Consensus       211 ~~~~~~~~i~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~  289 (378)
T PRK07682        211 IKGMRERTILISGFSKGFAMTG-WRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRR  289 (378)
T ss_pred             cccccCCEEEEecCcccccChh-hhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            11  124688999999998665 5789999999999998876654444445555544444443    2344455566778


Q ss_pred             HHHHHHHHcC
Q 013019          418 LRMAEILEAH  427 (451)
Q Consensus       418 ~~Lae~L~~~  427 (451)
                      ..+.+.|+++
T Consensus       290 ~~~~~~L~~~  299 (378)
T PRK07682        290 NFFVTSFNEI  299 (378)
T ss_pred             HHHHHHHHHC
Confidence            8888889876

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.86  E-value=2.5e-20  Score=192.89  Aligned_cols=215  Identities=13%  Similarity=0.147  Sum_probs=152.3

Q ss_pred             CCchh-HHHHHHHHHhhh----CC----CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          207 YGNPT-TVVVEEKMSALE----GA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       207 ~~npt-~~~Lee~LA~l~----ga----e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      |+++. ...|++++++++    |.    ++.+++++| ++++..++.+++++||+|++++|+|+.....+    ...|++
T Consensus        69 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~  144 (394)
T PRK05942         69 YPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGP----LIAGAQ  144 (394)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCE
Confidence            44433 356777777765    42    334555555 59999999999999999999999999865433    346777


Q ss_pred             EEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----c
Q 013019          277 ATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K  342 (451)
Q Consensus       277 v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~  342 (451)
                      +..++.       .|++++++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    .
T Consensus       145 ~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~  223 (394)
T PRK05942        145 IYPIILKPENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPT  223 (394)
T ss_pred             EEEeecCCccCCccCHHHHHHhccc-cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCC
Confidence            666532       478899998876 4999999999999999997   778999999999999999998643211    1


Q ss_pred             c---cc--CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---H-HHHHHHHH
Q 013019          343 A---LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---T-LHLRVQQQ  413 (451)
Q Consensus       343 p---l~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---t-l~~Rl~~~  413 (451)
                      +   +.  ....+++.|+||.++.+| ++.||++++++++++++......+...+...+.++...++   . +....++.
T Consensus       224 ~~~~~~~~~~~~i~~~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  302 (394)
T PRK05942        224 SLLEIPGAKDIGVEFHTLSKTYNMAG-WRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERY  302 (394)
T ss_pred             ChhhCCCccccEEEEecchhccCChh-hheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            1   11  123578899999997666 6789999999999999887765444444444444333333   2 22333445


Q ss_pred             HHHHHHHHHHHHcC
Q 013019          414 NSTALRMAEILEAH  427 (451)
Q Consensus       414 ~~nA~~Lae~L~~~  427 (451)
                      .++...+.+.|+++
T Consensus       303 ~~~~~~~~~~L~~~  316 (394)
T PRK05942        303 RTRRDFLIQGLGEL  316 (394)
T ss_pred             HHHHHHHHHHHHHC
Confidence            56666777888765

>PLN02187 rooty/superroot1

Probab=99.86  E-value=9.4e-20  Score=192.97  Aligned_cols=216  Identities=14%  Similarity=0.132  Sum_probs=153.5

Q ss_pred             chhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          209 NPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       209 npt~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      .+....|++.+|++++        .++.++++++++++..++.+++++||+|++++|.|.....    .+...|+++..+
T Consensus       107 ~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~----~~~~~g~~~~~~  182 (462)
T PLN02187        107 GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDA----RAAYSGLEVRKF  182 (462)
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHH----HHHHcCCEEEEE
Confidence            3446678888888763        2344444455599999999999999999999999997543    345567777665


Q ss_pred             CC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc-c
Q 013019          281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-S  345 (451)
Q Consensus       281 d~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl-~  345 (451)
                      +.       .|+++|+++++++ +++|++++|+||||.+++   +++|+++|+++|++||+||+|......    .++ .
T Consensus       183 ~l~~~~~~~~d~~~l~~~~~~~-~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~  261 (462)
T PLN02187        183 DLLPEKEWEIDLEGIEAIADEN-TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGK  261 (462)
T ss_pred             eCccccCCccCHHHHHHhcCCC-cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHH
Confidence            42       3789999988774 899999999999999986   788999999999999999998763321    111 1


Q ss_pred             C---CCcEEEECCcccCCccccceeEEEEe-CHH----HHHHHHHHhHhhCC--CccHHHHHHHHHhh-----HHHHHHH
Q 013019          346 L---GADLVLHSATKFIGGHNDVLAGSISG-SGK----LVTQIRNLHHVLGG--ALNPNAAYLIIRGM-----KTLHLRV  410 (451)
Q Consensus       346 ~---GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~e----li~~lr~~~~~~G~--~ls~~~a~l~lrgL-----~tl~~Rl  410 (451)
                      +   ..-+++.|+||.++.+| .+.||+++ +++    +++.+...+..++.  ..+.+...++...|     +.+....
T Consensus       262 ~~~~~~vi~l~SfSK~f~~pG-lRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~  340 (462)
T PLN02187        262 FASIVPVLTLAGISKGWVVPG-WKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKN  340 (462)
T ss_pred             hccCCcEEEEecchhhcCCcc-ceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHH
Confidence            1   12488899999999888 67888887 333    33455555554433  23454444444333     2344455


Q ss_pred             HHHHHHHHHHHHHHHcCCCe
Q 013019          411 QQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~p~V  430 (451)
                      +...++.+.+.+.|+++|.+
T Consensus       341 ~~l~~~r~~l~~~L~~~~~~  360 (462)
T PLN02187        341 KILKHNVDLVCDRLKDIPCV  360 (462)
T ss_pred             HHHHHHHHHHHHHHhhCCCC
Confidence            66777888899999887643

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.86  E-value=6.1e-20  Score=192.67  Aligned_cols=214  Identities=16%  Similarity=0.142  Sum_probs=151.1

Q ss_pred             hHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          211 TTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       211 t~~~Lee~LA~l~ga--------e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ....|++.++++++.        ++.++++++++|+..++.+++++||+|++++|.|.....    .....|+++..++.
T Consensus        95 G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~----~~~~~g~~~~~~~~  170 (430)
T PLN00145         95 GLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEA----RAVFSGLEVRHFDL  170 (430)
T ss_pred             cCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHH----HHHHcCCEEEEeeC
Confidence            356788888887642        456666666799999999999999999999999987543    23345777776552


Q ss_pred             -------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc-cC-
Q 013019          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SL-  346 (451)
Q Consensus       283 -------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl-~~-  346 (451)
                             .|+++|+++++++ +++|++++|+||||.+++   +++|.++|+++|++||+|++|......    .++ .+ 
T Consensus       171 ~~~~~~~~d~~~l~~~~~~~-~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~  249 (430)
T PLN00145        171 LPERGWEVDLEGVEALADEN-TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFG  249 (430)
T ss_pred             CcccCCcCCHHHHHHHhCcC-ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhc
Confidence                   3789999988874 999999999999999997   788899999999999999998753221    111 11 


Q ss_pred             --CCcEEEECCcccCCccccceeEEEEe--CHHHHHH------HHHHhHhhCCCccHHHHHHHHHhhH-----HHHHHHH
Q 013019          347 --GADLVLHSATKFIGGHNDVLAGSISG--SGKLVTQ------IRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQ  411 (451)
Q Consensus       347 --GaDiVv~S~SK~l~G~gdv~gG~Iv~--~~eli~~------lr~~~~~~G~~ls~~~a~l~lrgL~-----tl~~Rl~  411 (451)
                        ..-|++.|+||.++.+| .+.||+++  ++.+++.      ++.... .....+.+.++.+...|+     .+...++
T Consensus       250 ~~~~vi~~~S~SK~~~~pG-~RlG~iv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~  327 (430)
T PLN00145        250 EVAPVLTLGSISKRWVVPG-WRLGWIATCDPNGILKETKVVDSIRNYLN-ISTDPATFVQGAIPQIIANTKEEFFTKTLG  327 (430)
T ss_pred             ccCcEEEEeccccccCCCC-eeEEEEEEecchhhhhhhHHHHHHHHHhc-ccCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence              23488999999998887 57888886  3444432      222222 222334444444333332     3455566


Q ss_pred             HHHHHHHHHHHHHHcCCCeE
Q 013019          412 QQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~V~  431 (451)
                      +..++++.+.+.|++++++.
T Consensus       328 ~~~~~~~~~~~~L~~~~g~~  347 (430)
T PLN00145        328 LLKETADICYEKIKEIKCIT  347 (430)
T ss_pred             HHHHHHHHHHHHHhcCCCCC
Confidence            77778888889998876653

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.86  E-value=1.6e-20  Score=189.98  Aligned_cols=215  Identities=18%  Similarity=0.254  Sum_probs=161.8

Q ss_pred             cccCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~gae-~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      .|.+|+++....|++.+++++|.+ +.+++++|+ +++..++ .++.+| .|++.+|+|....    ..++..|+++..+
T Consensus        40 ~~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~-~~l~~g-~vl~~~p~y~~~~----~~~~~~g~~~~~~  113 (330)
T TIGR01140        40 AWARYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLP-RLLAPG-RVLVLAPTYSEYA----RAWRAAGHEVVEL  113 (330)
T ss_pred             HHhhCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHH-HHhCCC-eEEEeCCCcHHHH----HHHHHcCCEEEEe
Confidence            477888888899999999999963 667777777 6766654 446777 6999999998754    3456778988877


Q ss_pred             CCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcccc-c----cCCCcEEE
Q 013019          281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA-L----SLGADLVL  352 (451)
Q Consensus       281 d~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~p-l----~~GaDiVv  352 (451)
                      +  |++++++.+++  +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|........ .    ..+.++++
T Consensus       114 ~--d~~~l~~~~~~--~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~  189 (330)
T TIGR01140       114 P--DLDRLPAALEE--LDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVL  189 (330)
T ss_pred             C--CHHHHHhhccc--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEE
Confidence            7  89999998843  789999999999999998   66778888999999999999865432211 1    12456999


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcCCC
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      .|+||+++.+| ++.|++++++++++++......+  ..+...+..+.+.++.   .....++..++.+.+.+.|++++.
T Consensus       190 ~S~SK~~g~~G-~R~G~i~~~~~~~~~l~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  266 (330)
T TIGR01140       190 RSLTKFFGLAG-LRLGFVVAHPALLARLREALGPW--TVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGG  266 (330)
T ss_pred             EecchhhcCch-hhhhheeCCHHHHHHHHhcCCCC--CchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999998776 67899999999998888765433  3344544444444432   233456666778888899998876


Q ss_pred             e
Q 013019          430 V  430 (451)
Q Consensus       430 V  430 (451)
                      +
T Consensus       267 ~  267 (330)
T TIGR01140       267 L  267 (330)
T ss_pred             c
Confidence            5

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN00175 aminotransferase family protein; Provisional

Probab=99.86  E-value=1.4e-19  Score=188.86  Aligned_cols=210  Identities=15%  Similarity=0.200  Sum_probs=155.9

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCC-HHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sS-G~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...|++.+++++    |.    ++.+++++ +++|+..++.+++++||+|++++|.|.....    .+...|.++..++.
T Consensus        93 ~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~~~~g~~~~~v~~  168 (413)
T PLN00175         93 VPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEA----TLSMAGAKIKTVTL  168 (413)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHH----HHHHcCCEEEEEEC
Confidence            455667666654    32    22455555 4599999999999999999999999987553    34456777766642


Q ss_pred             ------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---c-cc----
Q 013019          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LS----  345 (451)
Q Consensus       283 ------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---p-l~----  345 (451)
                            .|+++|++++.++ +++|++++|+||||.+++   +++|+++|++||+++|+|++|.......   + ..    
T Consensus       169 ~~~~~~~~~~~l~~~~~~~-~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~  247 (413)
T PLN00175        169 RPPDFAVPEDELKAAFTSK-TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGM  247 (413)
T ss_pred             CcccCCCCHHHHHHhcCcC-ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCC
Confidence                  3689999999774 999999999999999985   7789999999999999999986543211   1 11    


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMA  421 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~~La  421 (451)
                      .+..|++.|+||.++.+| .+.||+++++++++.++........+.+....+++...|+    .+....+...++.+.+.
T Consensus       248 ~~~vi~i~SfSK~~~~~G-~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  326 (413)
T PLN00175        248 YERTVTMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILV  326 (413)
T ss_pred             cCcEEEEecchhhccCcc-hheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            134588999999998776 5789999999999999887765555566666555555553    23444556677888888


Q ss_pred             HHHHcC
Q 013019          422 EILEAH  427 (451)
Q Consensus       422 e~L~~~  427 (451)
                      +.|+++
T Consensus       327 ~~L~~~  332 (413)
T PLN00175        327 EGLKEV  332 (413)
T ss_pred             HHHHHC
Confidence            999886

>PRK07337 aminotransferase; Validated

Probab=99.86  E-value=4.9e-20  Score=190.05  Aligned_cols=210  Identities=20%  Similarity=0.224  Sum_probs=153.7

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--  281 (451)
                      ...|++.+++++    |.    ++.++++++++|+..++.+++++||+|++++|+|......+    ...|.++..++  
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~~~~~  144 (388)
T PRK07337         69 LAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFV----AAAEGRPVLVPSG  144 (388)
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEeecC
Confidence            567888888875    32    44555555669999999999999999999999999876443    34466665553  


Q ss_pred             -----CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccccCCCc
Q 013019          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLGAD  349 (451)
Q Consensus       282 -----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl~~GaD  349 (451)
                           ..|++++++.++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    ....++.+
T Consensus       145 ~~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  223 (388)
T PRK07337        145 PAERFQLTAADVEAAWGER-TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDD  223 (388)
T ss_pred             CccCCcCCHHHHHhhcCcc-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCC
Confidence                 23689999999774 899999999999999885   678889999999999999998643211    12223333


Q ss_pred             -EEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHH
Q 013019          350 -LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       350 -iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL-----~tl~~Rl~~~~~nA~~Lae~  423 (451)
                       +++.|+||.++.+| .+.||++++++++++++.....++...+....+++...+     +.+....++..++.+.+.+.
T Consensus       224 vi~~~S~SK~~~~~G-~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~  302 (388)
T PRK07337        224 VITINSFSKYFNMTG-WRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPA  302 (388)
T ss_pred             EEEEEechhhcCCch-hheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence             56889999998776 568999999999999888776665555555544443333     23433345556677778888


Q ss_pred             HHcC
Q 013019          424 LEAH  427 (451)
Q Consensus       424 L~~~  427 (451)
                      |+++
T Consensus       303 L~~~  306 (388)
T PRK07337        303 LESL  306 (388)
T ss_pred             HHhc
Confidence            8875

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.86  E-value=3.9e-20  Score=192.43  Aligned_cols=213  Identities=21%  Similarity=0.244  Sum_probs=159.0

Q ss_pred             CCc-hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC
Q 013019          207 YGN-PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (451)
Q Consensus       207 ~~n-pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~  283 (451)
                      +++ +...+||++|++++|.+++++++||++|+..++..+..  +||.|+++...|+..+.    .+...|.++..+...
T Consensus        87 ~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~----~~~~~g~~~~~~~~~  162 (410)
T PRK13392         87 SGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIE----GIRRSGAEKQVFRHN  162 (410)
T ss_pred             ccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHH----HHHHcCCeEEEEeCC
Confidence            444 35789999999999999999999999998888877754  89988887767766543    334567777766666


Q ss_pred             CHHHHHHhhc---CCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---------cccCCCcEE
Q 013019          284 DMEGLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLV  351 (451)
Q Consensus       284 D~d~Le~ai~---~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---------pl~~GaDiV  351 (451)
                      |.+.+++.++   ..++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+....         .+....|++
T Consensus       163 d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div  242 (410)
T PRK13392        163 DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMI  242 (410)
T ss_pred             CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEE
Confidence            7766666654   2258999999999999999999999999999999999999987443211         111246899


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHc
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      +.|++|.+++.    ||++++++++++.++.....  ++..+++..++.+...|   +....+.+++.++.+++.+.|++
T Consensus       243 ~~tlsK~~g~~----GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~  318 (410)
T PRK13392        243 QGTLAKAFGCL----GGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNA  318 (410)
T ss_pred             EEEChHhhhcc----cchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999875    58999999999988876543  23445555554443444   33444556677888888888876


Q ss_pred             C
Q 013019          427 H  427 (451)
Q Consensus       427 ~  427 (451)
                      .
T Consensus       319 ~  319 (410)
T PRK13392        319 N  319 (410)
T ss_pred             c
Confidence            4

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=5.3e-20  Score=191.47  Aligned_cols=235  Identities=19%  Similarity=0.228  Sum_probs=174.2

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHH---ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          209 NPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae--~~vv~sSG~-aAi~~al~al---l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ....++.|++++++.|++  +.|+|+.|+ +++..+..++   +++||+||+++..|.+....+....++.|+++++++.
T Consensus        65 t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~  144 (405)
T COG0520          65 TDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPL  144 (405)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEec
Confidence            345677899999999975  567777666 8999999888   6999999999999999887777778888999988874


Q ss_pred             C-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCc
Q 013019          283 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 ~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~S  356 (451)
                      .     +.++++..++++ ||+|.+...+|.||.+.|+++|+++||++|++++||.+++.+. ..+.-++|+|+++.|.+
T Consensus       145 ~~~g~~~~~~~~~~i~~~-Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgH  223 (405)
T COG0520         145 DDDGLLDLDALEKLITPK-TKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGH  223 (405)
T ss_pred             CCCCCcCHHHHHHhcCCC-ceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEccc
Confidence            2     588999988874 9999999999999999999999999999999999999987763 33444689999999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHHhH----------------------hhCCCccHHHHHHHHHhhHHH---H-HHH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH----------------------VLGGALNPNAAYLIIRGMKTL---H-LRV  410 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~~~----------------------~~G~~ls~~~a~l~lrgL~tl---~-~Rl  410 (451)
                      ||+.|+.  ..|++++++++++++.....                      .-.++++....+.+..+++.+   . ..+
T Consensus       224 Kwl~gP~--GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i  301 (405)
T COG0520         224 KWLLGPT--GIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAI  301 (405)
T ss_pred             ccccCCC--ceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHH
Confidence            9888884  38999999999888732211                      011122222222222233322   2 123


Q ss_pred             -HHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccccc
Q 013019          411 -QQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVGF  449 (451)
Q Consensus       411 -~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~f  449 (451)
                       ++..+....+.+.|++.|+|+. +.|..  .....+++|
T Consensus       302 ~~~e~~L~~~~~~~L~~~~~v~i-~g~~~--~~r~~~vsF  338 (405)
T COG0520         302 EAHERELTEYLLEGLSELPGVEI-YGPPD--ADRGGIVSF  338 (405)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEE-ecCCc--ccCceEEEE
Confidence             3334567778888999999855 44433  334445544

>PLN02483 serine palmitoyltransferase

Probab=99.86  E-value=8.6e-20  Score=194.49  Aligned_cols=213  Identities=17%  Similarity=0.230  Sum_probs=164.6

Q ss_pred             CC-chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCH
Q 013019          207 YG-NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (451)
Q Consensus       207 ~~-npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~  285 (451)
                      |+ .+..++||++||+++|.++++++++|+.++..++.+++++||+|+++++.|.+...    .++..|+++..++..|.
T Consensus       142 ~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~----~~~~~Ga~v~~~~~~d~  217 (489)
T PLN02483        142 GGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVN----GARGSGATIRVFQHNTP  217 (489)
T ss_pred             cCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHH----HHHHcCCeEEEEeCCCH
Confidence            44 57889999999999999999999999999988899999999999999999988653    34567899988887788


Q ss_pred             HHHHHhhcC------CCe-----E-EEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-------c--cc
Q 013019          286 EGLEAALNN------NNV-----S-LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------K--AL  344 (451)
Q Consensus       286 d~Le~ai~~------~~t-----k-lV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-------~--pl  344 (451)
                      +++++.+++      .++     + +|++|...|++|.+.++++|.++|+++|++|++||+++.+...       .  ..
T Consensus       218 ~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v  297 (489)
T PLN02483        218 SHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGV  297 (489)
T ss_pred             HHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCC
Confidence            887776642      112     4 6777777899999999999999999999999999998643211       0  11


Q ss_pred             -cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHH---------HHHHHHH
Q 013019          345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---------LHLRVQQ  412 (451)
Q Consensus       345 -~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~t---------l~~Rl~~  412 (451)
                       ..+.||++.|+||.+++.    ||++++++++++.++....  ..+..+++..+..++.+|+.         ...++++
T Consensus       298 ~~~~~dI~~~SfSKs~g~~----GG~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~  373 (489)
T PLN02483        298 DPADVDIMMGTFTKSFGSC----GGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQ  373 (489)
T ss_pred             CcccCcEEEEecchhcccC----ceEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHH
Confidence             135789999999999875    5999999999999887543  23434444444434444432         2345677


Q ss_pred             HHHHHHHHHHHHHcC
Q 013019          413 QNSTALRMAEILEAH  427 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~  427 (451)
                      ..++.+.+.+.|+++
T Consensus       374 l~~~~~~l~~~L~~~  388 (489)
T PLN02483        374 IRENSNFFRSELQKM  388 (489)
T ss_pred             HHHHHHHHHHHHHHC
Confidence            888888999999886

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.86  E-value=2.7e-20  Score=188.56  Aligned_cols=219  Identities=16%  Similarity=0.264  Sum_probs=162.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeC-CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga-e~~vv~s-SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+|+.+...+|++.++++++. .+.++++ ++++++..++.+++++||+|++++|+|+...    ..+...|+++..++.
T Consensus        49 ~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~----~~~~~~g~~~~~~~~  124 (346)
T TIGR01141        49 HRYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYE----ISAKIHGAEVVKVPL  124 (346)
T ss_pred             hcCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHH----HHHHHcCCeEEEecc
Confidence            456677778999999999985 2344455 4558988888999999999999999986433    334567888777653


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCCcc-ccc---c-CCCcE
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQ-KAL---S-LGADL  350 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~~~-~pl---~-~GaDi  350 (451)
                           .|++++++++++ ++++|++++|+||||.+.+++++.++|+.+  |+++|+|++|...... .+.   . ...++
T Consensus       125 ~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i  203 (346)
T TIGR01141       125 DEDGQLDLEDILVAIDD-KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLI  203 (346)
T ss_pred             CCCCCCCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEE
Confidence                 478999998876 499999999999999999999999999887  9999999998732211 111   1 22357


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++.|+||+++.+| .+.|+++++++++++++.....++  .++.....+...+   ..+....++..++.+.+.+.|+++
T Consensus       204 ~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  280 (346)
T TIGR01141       204 VLRTLSKAFGLAG-LRIGYAIANAEIIDALNKVRAPFN--LSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL  280 (346)
T ss_pred             EEehhhHhhhchh-hhceeeecCHHHHHHHHhccCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8899999997665 568999999999998887654443  3344333333333   234445667778888899999988


Q ss_pred             CCeE
Q 013019          428 PKVL  431 (451)
Q Consensus       428 p~V~  431 (451)
                      |++.
T Consensus       281 ~g~~  284 (346)
T TIGR01141       281 PGLE  284 (346)
T ss_pred             CCCE
Confidence            7765

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.86  E-value=5e-20  Score=192.88  Aligned_cols=214  Identities=15%  Similarity=0.171  Sum_probs=155.8

Q ss_pred             CCchh-HHHHHHHHHhhhC----CCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          207 YGNPT-TVVVEEKMSALEG----AESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       207 ~~npt-~~~Lee~LA~l~g----ae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      |+.+. ...|++.++++++    .++.+++++|+ +++..++.+++++||.|++++|+|......    ++..|+++..+
T Consensus       117 Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~----~~~~g~~~~~v  192 (431)
T PRK15481        117 YGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINM----LRYAGFSASPV  192 (431)
T ss_pred             cCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCeEEee
Confidence            44443 3568888888765    23355555555 999999999999999999999999886643    44567776665


Q ss_pred             CC----CCHHHHHHhhcCCCeEEEEEe-CCCCCccccccHH---HHHHHHHhc-CCEEEEecCCCCCCc---ccccc--C
Q 013019          281 DP----ADMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLCHKK-GAIVCIDGTFATPLN---QKALS--L  346 (451)
Q Consensus       281 d~----~D~d~Le~ai~~~~tklV~le-sPsNPtG~v~DL~---~IaelA~~~-g~~lVVD~tfa~~~~---~~pl~--~  346 (451)
                      +.    .|+++|++++++ ++++|+++ +|+||||.+++.+   +|.++|+++ +++||+|++|.....   ..++.  .
T Consensus       193 ~~~~~g~~~~~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  271 (431)
T PRK15481        193 SVDAEGMQPEKLERALAQ-GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTT  271 (431)
T ss_pred             ccCCCCCCHHHHHHHHhc-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCC
Confidence            43    478999999876 48998887 9999999999865   899999999 999999999864321   11121  1


Q ss_pred             CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH------HHHHHHHHHHHHHHH
Q 013019          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRM  420 (451)
Q Consensus       347 GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA~~L  420 (451)
                      ...+++.|+||.++ +| ++.||++++++++++++.........++...+.++...|+.      +....+...++.+.+
T Consensus       272 ~~vi~~~SfSK~~~-~G-lRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~  349 (431)
T PRK15481        272 QRWALIRSVSKALG-PD-LRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKL  349 (431)
T ss_pred             CCEEEEeeeccccC-CC-ceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence            23589999999999 66 68899999999999887665544344566655554444432      333445566777788


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|+++
T Consensus       350 ~~~L~~~  356 (431)
T PRK15481        350 ARALQQY  356 (431)
T ss_pred             HHHHHHc
Confidence            8888875

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.86  E-value=2.9e-20  Score=188.22  Aligned_cols=212  Identities=20%  Similarity=0.283  Sum_probs=148.6

Q ss_pred             cccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      .+.||++|...+|+++|++++|. ...|++++|+ +++..++. ++++|+ |++.+|.|....    ..++..|+++..+
T Consensus        33 ~~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~----~~~~~~G~~v~~v  106 (332)
T PRK06425         33 DISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YINVGN-IIIVEPNFNEYK----GYAFTHGIRISAL  106 (332)
T ss_pred             hcccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-HhCCCc-EEEeCCChHHHH----HHHHHcCCeEEEE
Confidence            36789999999999999999986 4456666666 88888776 567764 666689888755    3455678888776


Q ss_pred             CCC----CHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc--c-c----cC
Q 013019          281 DPA----DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--A-L----SL  346 (451)
Q Consensus       281 d~~----D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~--p-l----~~  346 (451)
                      +..    |.+.++    ..++++|++++|+||||.+++   +++|.++|+++|++||+||+|.......  + .    ..
T Consensus       107 p~~~~~~~~~~l~----~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~  182 (332)
T PRK06425        107 PFNLINNNPEILN----NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSY  182 (332)
T ss_pred             eCCcccCcHHHHh----hcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccC
Confidence            542    333333    225899999999999999987   5677778899999999999987543211  1 1    11


Q ss_pred             CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHH-hhHHH-HHHHHHHHHHHHHHHHHH
Q 013019          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR-GMKTL-HLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       347 GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lr-gL~tl-~~Rl~~~~~nA~~Lae~L  424 (451)
                      ...|++.|+||.++.+| ++.||++++++++++++.....+..  +...+..+.. ..+.+ ....+...++.+.+.+.|
T Consensus       183 ~~vi~~~SfSK~~~l~G-lRiGy~v~~~~li~~l~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L  259 (332)
T PRK06425        183 GNVIIGRSLTKILGIPS-LRIGYIATDDYNMKISRKITEPWSV--CDPAIDFIRSIDLDYVAKHSLDIMENERSYLINNL  259 (332)
T ss_pred             CCEEEEeecHHhcCCch-hhheeeecCHHHHHHHHHcCCCCcc--CHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34588899999999776 6789999999999988876544332  2322222222 12222 233455566777788888


Q ss_pred             HcC
Q 013019          425 EAH  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +++
T Consensus       260 ~~~  262 (332)
T PRK06425        260 EAM  262 (332)
T ss_pred             HHC
Confidence            876

>PRK07550 hypothetical protein; Provisional

Probab=99.86  E-value=6.6e-20  Score=188.98  Aligned_cols=213  Identities=16%  Similarity=0.168  Sum_probs=154.1

Q ss_pred             HHHHHHHHHhhh----CC---CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          212 TVVVEEKMSALE----GA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga---e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ...|++.+++++    |.   .+.+++++| ++|+..++.+++++||+|++++|.|.....    .++..|+++..++. 
T Consensus        69 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~  144 (386)
T PRK07550         69 LPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKM----WLDMLGIRPVYLPCD  144 (386)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHH----HHHhcCCEEEEEecC
Confidence            445555555544    42   345666666 489999999999999999999999987653    34567888777653 


Q ss_pred             ------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc--cc---cc---
Q 013019          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--KA---LS---  345 (451)
Q Consensus       283 ------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~--~p---l~---  345 (451)
                            .|+++++++++++ +++|++++|+||||.+++   +++|.++|+++|+++|+|++|+.....  .+   ..   
T Consensus       145 ~~~~~~~~~~~l~~~~~~~-~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~  223 (386)
T PRK07550        145 EGPGLLPDPAAAEALITPR-TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPD  223 (386)
T ss_pred             CCcCCCCCHHHHHHHhccc-CcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCC
Confidence                  2678899999874 899999999999999986   788999999999999999998643211  11   11   


Q ss_pred             CC-CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH----HHHHHHHHHHHHH
Q 013019          346 LG-ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH----LRVQQQNSTALRM  420 (451)
Q Consensus       346 ~G-aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~----~Rl~~~~~nA~~L  420 (451)
                      .+ ..+++.|+||.++.+| .++|+++++++++++++......+.+.+...++.+...++.+.    ...++..++...+
T Consensus       224 ~~~~~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l  302 (386)
T PRK07550        224 WDDTLVHLYSFSKSYALTG-HRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAF  302 (386)
T ss_pred             ccccEEEEecchhhccCcc-cceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            11 2477999999998555 5789999999999988887766655556666555555444322    2234455677788


Q ss_pred             HHHHHcCCCe
Q 013019          421 AEILEAHPKV  430 (451)
Q Consensus       421 ae~L~~~p~V  430 (451)
                      .+.|.+++++
T Consensus       303 ~~~L~~~~~~  312 (386)
T PRK07550        303 RAVFARLPGW  312 (386)
T ss_pred             HHHHHhCCCc
Confidence            8889887554

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.86  E-value=6.5e-20  Score=189.13  Aligned_cols=211  Identities=13%  Similarity=0.117  Sum_probs=148.2

Q ss_pred             hHHHHHHHHHhhh----C--C-Cc-EEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          211 TTVVVEEKMSALE----G--A-ES-TVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       211 t~~~Lee~LA~l~----g--a-e~-~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ....|+++|++++    |  . .+ .|++++|+ +++..++.+++++||+|++++|+|......    +...|.++..++
T Consensus        69 G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~  144 (388)
T PRK07366         69 GTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGG----VYLAGGQIYPMP  144 (388)
T ss_pred             CCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhcCCEEEEEE
Confidence            3456777777765    4  2 23 57767666 899999999999999999999999886533    445677766653


Q ss_pred             C-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc-----c-cc
Q 013019          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----A-LS  345 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~-----p-l~  345 (451)
                      .       .|++++++.+.+ ++++|++++|+||||.+.+   +++|+++|+++|++||+||+|.......     . ..
T Consensus       145 ~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  223 (388)
T PRK07366        145 LRAENDFLPVFADIPTEVLA-QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQ  223 (388)
T ss_pred             CCCccCCCCCHHHHHHhhcc-cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhh
Confidence            2       256778777765 4899999999999999986   5677888999999999999986543211     1 11


Q ss_pred             C----CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc-cHHH-H-HHHHH-hhHHHHHHHHHHHHHH
Q 013019          346 L----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNA-A-YLIIR-GMKTLHLRVQQQNSTA  417 (451)
Q Consensus       346 ~----GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l-s~~~-a-~l~lr-gL~tl~~Rl~~~~~nA  417 (451)
                      +    ...|++.|+||.++.+| ++.||++++++++++++..+...+.+. +... + ...+. .-+.+....+...++.
T Consensus       224 ~~~~~~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r  302 (388)
T PRK07366        224 ADPEKSVSIEFFTLSKSYNMGG-FRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRR  302 (388)
T ss_pred             CCCCcccEEEEeecccccCCcc-hhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            1    12377899999998776 678999999999999988776554433 2221 1 11111 1233444455566777


Q ss_pred             HHHHHHHHcC
Q 013019          418 LRMAEILEAH  427 (451)
Q Consensus       418 ~~Lae~L~~~  427 (451)
                      ..+.+.|+++
T Consensus       303 ~~l~~~L~~~  312 (388)
T PRK07366        303 DAFINALHQI  312 (388)
T ss_pred             HHHHHHHHHC
Confidence            7788888776

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.86  E-value=1.3e-19  Score=188.86  Aligned_cols=219  Identities=14%  Similarity=0.170  Sum_probs=153.6

Q ss_pred             cCCCch-hHHHHHHHHHhhhCC-------------CcEEEeCC-HHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHh
Q 013019          205 GRYGNP-TTVVVEEKMSALEGA-------------ESTVIMAS-GMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV  269 (451)
Q Consensus       205 ~R~~np-t~~~Lee~LA~l~ga-------------e~~vv~sS-G~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~  269 (451)
                      .+|+++ ....|++.|+++++.             ++.+++++ +++++..++.+++++||+|++++|+|.....    .
T Consensus        69 ~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~----~  144 (412)
T PTZ00433         69 NGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYET----V  144 (412)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHH----H
Confidence            345555 367788888887641             23444554 4599999999999999999999999988553    3


Q ss_pred             hhcCCcEEEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCC
Q 013019          270 LPKMGITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL  339 (451)
Q Consensus       270 l~~~Gi~v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~  339 (451)
                      +...|+++..++.       .|+++|+++++++ +++|++++|+||||.+++   +++|+++|+++|++||+|++|....
T Consensus       145 ~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~-~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~  223 (412)
T PTZ00433        145 CKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDR-TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV  223 (412)
T ss_pred             HHHcCCEEEEEecCccccCcCCHHHHHHHhccC-ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence            4566777766642       3688999888764 899999999999999875   7788999999999999999987543


Q ss_pred             ccc----cc-cC---CCcEEEECCcccCCccccceeEEEEe------CHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH-
Q 013019          340 NQK----AL-SL---GADLVLHSATKFIGGHNDVLAGSISG------SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-  404 (451)
Q Consensus       340 ~~~----pl-~~---GaDiVv~S~SK~l~G~gdv~gG~Iv~------~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~-  404 (451)
                      ...    ++ .+   ..-+++.|+||.++.+| ++.||+++      .+++++.++...... ...+...+..+...+. 
T Consensus       224 ~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRlG~~i~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~q~a~~~~l~~  301 (412)
T PTZ00433        224 FNGATFTSVADFDTTVPRVILGGTAKNLVVPG-WRLGWLLLVDPHGNGGDFLDGMKRLGMLV-CGPCSVVQAALGEALLN  301 (412)
T ss_pred             cCCCCccchhhccCCCceEEEccchhhcCCCC-eeEEEEEEeCCcccHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHhc
Confidence            211    11 11   12478899999998777 67888886      245777776654322 2345554443333332 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          405 ----TLHLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       405 ----tl~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                          .+....++..++.+.+.+.|+++.++
T Consensus       302 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~  331 (412)
T PTZ00433        302 TPQEHLEQIVAKLEEGAMVLYNHIGECIGL  331 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                23334456667788888899876544

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.86  E-value=1.6e-20  Score=191.71  Aligned_cols=218  Identities=16%  Similarity=0.206  Sum_probs=159.3

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCC-CeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~G-D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +.||+++....|++++|+.+|. ++.|++++|+ +++..++.+++++| |+|++++|.|....    ..++..|+++..+
T Consensus        54 ~~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~----~~~~~~g~~v~~v  129 (354)
T PRK04635         54 LNRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYA----ISAETFNVGVKAL  129 (354)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHH----HHHHHcCCEEEEE
Confidence            6778888889999999999986 4456666666 89999999999999 89999999997643    3456678887776


Q ss_pred             CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh-cCCEEEEecCCCCCCcccc-cc----CCCc
Q 013019          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKA-LS----LGAD  349 (451)
Q Consensus       281 d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~-~g~~lVVD~tfa~~~~~~p-l~----~GaD  349 (451)
                      +.     .|++.++ .+ + ++++|++++|+||||.+.+.+++.++++. .+++||+|++|........ ..    ...-
T Consensus       130 ~~~~~~~~~~~~l~-~~-~-~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~  206 (354)
T PRK04635        130 PLTADYQLPLDYIE-QL-D-GAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNL  206 (354)
T ss_pred             ecCCCCCCCHHHHH-hc-c-CCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCE
Confidence            53     2567776 34 3 48999999999999999999999999876 3799999999865432111 11    1223


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR-----GMKTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lr-----gL~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      +++.|+||+++.+| ++.|++++++++++.+......++  ++......+..     +.+.+..++++..++.+.+.+.|
T Consensus       207 iv~~S~SK~~~l~G-lRlG~~i~~~~~~~~l~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L  283 (354)
T PRK04635        207 VVLRTLSKAFALAG-ARCGFTLANEELIEILMRVIAPYP--VPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL  283 (354)
T ss_pred             EEEechHHHhhhhH-HHHhhhhCCHHHHHHHHhhcCCCC--CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999998666 568999999999988876544333  22222222222     23445555666777788899999


Q ss_pred             HcCCCeE
Q 013019          425 EAHPKVL  431 (451)
Q Consensus       425 ~~~p~V~  431 (451)
                      ++++++.
T Consensus       284 ~~~~~~~  290 (354)
T PRK04635        284 SMYGGAK  290 (354)
T ss_pred             HhCCCce
Confidence            9887653

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.86  E-value=5.3e-20  Score=190.25  Aligned_cols=216  Identities=18%  Similarity=0.220  Sum_probs=153.3

Q ss_pred             CCCchh-HHHHHHHHHhhh----C----C--CcEEEeCCHH-HHHHHHHHHHccCCCe--EEEcCCCCcchHHHHHHhhh
Q 013019          206 RYGNPT-TVVVEEKMSALE----G----A--ESTVIMASGM-SASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLP  271 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~----g----a--e~~vv~sSG~-aAi~~al~all~~GD~--VIv~~~~Y~~t~~~l~~~l~  271 (451)
                      +|+.+. ...|++++++++    |    .  ++.+++++|+ +++..++.+++++||+  |++++|.|.....    .+.
T Consensus        59 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~----~~~  134 (393)
T TIGR03538        59 TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEG----AAL  134 (393)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHH----HHH
Confidence            344443 456777777765    2    2  2356666665 8999999999999997  9999999987553    344


Q ss_pred             cCCcEEEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc
Q 013019          272 KMGITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ  341 (451)
Q Consensus       272 ~~Gi~v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~  341 (451)
                      ..|+++..++.       .|++++++++.+ ++|+|++++|+||||.+++   +++|+++|+++|++||+|++|......
T Consensus       135 ~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~  213 (393)
T TIGR03538       135 LAGAEPYFLNCTAENGFLPDFDAVPESVWR-RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFD  213 (393)
T ss_pred             hcCCeEEEeeccccCCCCCCHHHHHHHHhh-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccC
Confidence            56777666542       367889888866 4899999999999999987   778888999999999999998653221


Q ss_pred             ---cc---c----cCC-----CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH--
Q 013019          342 ---KA---L----SLG-----ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--  404 (451)
Q Consensus       342 ---~p---l----~~G-----aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~--  404 (451)
                         .+   +    ..+     ..+++.|+||.++.+| ++.||+++++++++++.......+...+...+..+...+.  
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G-lRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~  292 (393)
T TIGR03538       214 EGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPG-LRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDE  292 (393)
T ss_pred             CCCCCcCHHHhcccccccccccEEEEecchhhcCCcc-cceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcCh
Confidence               11   0    112     2388999999887776 6789999999999998877765555555555544433332  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          405 -TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       405 -tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                       .+....+...++...+.+.|+++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~L~~~  316 (393)
T TIGR03538       293 QHVRENRALYREKFAAVLEILGQV  316 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence             23333445556666677777654

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.86  E-value=1.3e-19  Score=183.15  Aligned_cols=214  Identities=19%  Similarity=0.207  Sum_probs=169.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      .+|...++|+.|++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++...    +...|+++.+++.    
T Consensus        16 ~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~   91 (352)
T cd00616          16 LGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANA----ILLLGATPVFVDIDPDT   91 (352)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH----HHHcCCeEEEEecCCCc
Confidence            46889999999999999999999999999999999988 68999999999999886543    3456888777653    


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--ccccCCCcEEEECCc--
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSAT--  356 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--~pl~~GaDiVv~S~S--  356 (451)
                        .|++++++++++ ++++|+++   |++|.+.|+++|.++|+++|+++|+|++++.+...  .++....|+.+.|++  
T Consensus        92 ~~~d~~~l~~~i~~-~~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~  167 (352)
T cd00616          92 YNIDPELIEAAITP-RTKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPT  167 (352)
T ss_pred             CCcCHHHHHHhcCc-CCeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCC
Confidence              268999999976 48999974   57899999999999999999999999998754322  222223689999976  


Q ss_pred             ccCCccccceeEEEEeC-HHHHHHHHHHhHh---------------hCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV---------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  420 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~---------------~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~L  420 (451)
                      |+++++   .||+++.+ +++.++++.....               +...+++..+.+.+..++.+....++..++++.+
T Consensus       168 K~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~  244 (352)
T cd00616         168 KNLTTG---EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERY  244 (352)
T ss_pred             CCCccc---CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999654   37877765 5787777654321               1123567777777777888888888889999999


Q ss_pred             HHHHHcCCCeEE
Q 013019          421 AEILEAHPKVLL  432 (451)
Q Consensus       421 ae~L~~~p~V~~  432 (451)
                      .+.|++.|+++.
T Consensus       245 ~~~L~~~~g~~~  256 (352)
T cd00616         245 KELLADLPGIRL  256 (352)
T ss_pred             HHHhcCCCCccC
Confidence            999999887753

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PLN02656 tyrosine transaminase

Probab=99.85  E-value=1.3e-19  Score=188.77  Aligned_cols=213  Identities=15%  Similarity=0.139  Sum_probs=152.5

Q ss_pred             hhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          210 PTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      .....|+++++++++        .++.++++++++|+..++.+++++||+|++++|.|.....    .....|+++..++
T Consensus        73 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~i~  148 (409)
T PLN02656         73 VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYEL----CAAFRHLEVRYVD  148 (409)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHH----HHHHcCCEEEEEe
Confidence            345667788877763        2455555566699999999999999999999999976432    2334577776664


Q ss_pred             C-------CCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCcc----ccc---
Q 013019          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL---  344 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~~----~pl---  344 (451)
                      .       .|+++++++++++ +++|++++|+||||.+.   ++++|+++|+++|++||+|++|......    .++   
T Consensus       149 ~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  227 (409)
T PLN02656        149 LLPEKGWEVDLDAVEALADQN-TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVF  227 (409)
T ss_pred             CCCcCCCCCCHHHHHHHhccC-ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHh
Confidence            3       3788999988764 89999999999999996   5888999999999999999998753211    111   


Q ss_pred             -cCCCcEEEECCcccCCccccceeEEEEeC--------HHHHHHHHHHhHhhCCCccHHHHHHHHHhhH-----HHHHHH
Q 013019          345 -SLGADLVLHSATKFIGGHNDVLAGSISGS--------GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRV  410 (451)
Q Consensus       345 -~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~--------~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~-----tl~~Rl  410 (451)
                       ....-|++.|+||.++.+| .+.||++++        ++++++++......+ ..+...++.+...++     .+....
T Consensus       228 ~~~~~vi~~~SfSK~f~~pG-lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~q~a~~~~l~~~~~~~~~~~~  305 (409)
T PLN02656        228 GSIVPVLTLGSLSKRWIVPG-WRLGWFVTTDPSGSFRDPKIVERIKKYFDILG-GPATFIQAAVPTILEQTDESFFKKTI  305 (409)
T ss_pred             cccCcEEEEcccchhccCcc-eeEEEEEEeCcccccccHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHhcCcHHHHHHHH
Confidence             1123478899999988877 678999873        578888877655433 334545444444443     244445


Q ss_pred             HHHHHHHHHHHHHHHcCCC
Q 013019          411 QQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~p~  429 (451)
                      ++..++...+.+.|++++.
T Consensus       306 ~~~~~~r~~~~~~L~~~~~  324 (409)
T PLN02656        306 NILKQSSDICCDRIKEIPC  324 (409)
T ss_pred             HHHHHHHHHHHHHHhhCCC
Confidence            5666777788888887654

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.85  E-value=1.5e-19  Score=182.72  Aligned_cols=212  Identities=21%  Similarity=0.217  Sum_probs=162.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+...++++.|+++++.+..+++++|++++..++.+++++||+|++.++.|......    +...|.++..++..|+++|
T Consensus        60 ~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l  135 (360)
T TIGR00858        60 SPLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDG----CRLSGARVRRYRHNDVEHL  135 (360)
T ss_pred             cHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHH----HHhcCCceEEecCCCHHHH
Confidence            366888999999999988899999999888878888899999999999999876533    3456788877777889999


Q ss_pred             HHhhcCC---CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-c--c------c-cCCCcEEEECC
Q 013019          289 EAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K--A------L-SLGADLVLHSA  355 (451)
Q Consensus       289 e~ai~~~---~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~--p------l-~~GaDiVv~S~  355 (451)
                      ++.+++.   ++++|++++++|++|...|+++|.++|+++|+++|+|+++..+... .  +      + ..+.|+++.|+
T Consensus       136 ~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~  215 (360)
T TIGR00858       136 ERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTL  215 (360)
T ss_pred             HHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEec
Confidence            9988642   3799999999999999999999999999999999999998643211 1  0      1 13678999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      ||.+++.    ||+++++++++++++.....  .+...++.....+...++   .+..+.++..++.+.+.+.|++++
T Consensus       216 sK~~~~~----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~  289 (360)
T TIGR00858       216 SKALGSY----GAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG  289 (360)
T ss_pred             hhhhhcc----CcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999874    48999999988887654332  223344444333333333   333455677788888888888763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=3.3e-20  Score=189.09  Aligned_cols=214  Identities=15%  Similarity=0.201  Sum_probs=157.3

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      +|+.+....|+++++++++. .+.+++++|. +++..++.+++++||+|++++|.|+....    .+...|.++..++. 
T Consensus        60 ~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~----~~~~~g~~~~~~~~~  135 (359)
T PRK03158         60 LYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRH----NAIIEGAEVREVPLK  135 (359)
T ss_pred             cCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH----HHHHcCCeEEEEecC
Confidence            35556678899999999986 3455555555 89988888999999999999999987543    33455777766643 


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh--cCCEEEEecCCCCCCcc----ccc----cCCCc
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----SLGAD  349 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~----~pl----~~GaD  349 (451)
                         .|++++++++++ ++++|++++|+||||.+.+.++|.++++.  +|+++|+||+|......    ..+    ..+..
T Consensus       136 ~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~v  214 (359)
T PRK03158        136 DGGHDLEAMLKAIDE-QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENL  214 (359)
T ss_pred             CCCcCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCE
Confidence               478999988876 48999999999999999999999999887  59999999998653221    111    12456


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHc
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      +++.|+||.++.+| ++.||++++++++++++..+..++  .+......+...++   .+....+...++.+.+.+.|++
T Consensus       215 i~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  291 (359)
T PRK03158        215 IVLRTFSKAYGLAA-LRVGYGIASEELIEKLNIARPPFN--TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKE  291 (359)
T ss_pred             EEEEechHhhcCcc-hhhehhcCCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999998776 678999999999998887665433  45555554444443   2333334445556667777877


Q ss_pred             C
Q 013019          427 H  427 (451)
Q Consensus       427 ~  427 (451)
                      +
T Consensus       292 ~  292 (359)
T PRK03158        292 Y  292 (359)
T ss_pred             C
Confidence            6

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.85  E-value=3.6e-20  Score=190.38  Aligned_cols=214  Identities=14%  Similarity=0.203  Sum_probs=156.5

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ++|+.+....|++.|+++++. .+.+++++|+ +++..++.+++++||+|++++|+|.....    .+...|+++..++.
T Consensus        59 ~~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~----~~~~~g~~v~~v~~  134 (366)
T PRK01533         59 ALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRH----HAIIEGCEVKEVAL  134 (366)
T ss_pred             CcCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHH----HHHHcCCEEEEeec
Confidence            346666677899999999986 4566666666 89999999999999999999999987553    34566888776653


Q ss_pred             ----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHH---hcCCEEEEecCCCCCCcc----ccc----cCC
Q 013019          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH---KKGAIVCIDGTFATPLNQ----KAL----SLG  347 (451)
Q Consensus       283 ----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~---~~g~~lVVD~tfa~~~~~----~pl----~~G  347 (451)
                          .|+++|+++++++ +++|++++|+||||.+++.+++.++++   +++ ++|+||+|......    ..+    ..+
T Consensus       135 ~~~~~d~~~l~~~~~~~-~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~  212 (366)
T PRK01533        135 NNGVYDLDEISSVVDND-TKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHK  212 (366)
T ss_pred             CCCCcCHHHHHHHhCcC-CcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCC
Confidence                4789999998764 899999999999999998766666654   444 68889997642211    111    123


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      ..|++.|+||.++.+| ++.||++++++++++++..+..  ..++.+...++...|+   .+....+...++.+.+.+.|
T Consensus       213 ~vi~~~SfSK~~~l~G-lRiG~~i~~~~~~~~l~~~~~~--~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l  289 (366)
T PRK01533        213 NILVLRTFSKAYGLAS-FRVGYAVGHEELIEKLNVVRLP--FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFC  289 (366)
T ss_pred             CEEEEeCchHHhcChH-HHHhHHhCCHHHHHHHHHhcCC--CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999777 5789999999999999876543  3456666555555543   23333444556677777777


Q ss_pred             HcC
Q 013019          425 EAH  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +.+
T Consensus       290 ~~~  292 (366)
T PRK01533        290 KEN  292 (366)
T ss_pred             HhC
Confidence            765

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.85  E-value=1.1e-19  Score=184.81  Aligned_cols=219  Identities=18%  Similarity=0.256  Sum_probs=159.4

Q ss_pred             ccCCCchh-HHHHHHHHHhhhC--------CCcEEEeCCHH-HHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhc
Q 013019          204 YGRYGNPT-TVVVEEKMSALEG--------AESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPK  272 (451)
Q Consensus       204 Y~R~~npt-~~~Lee~LA~l~g--------ae~~vv~sSG~-aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~  272 (451)
                      +.+|+.+. ...|+++|+++++        .+..+++++|+ +++..++..+ .++||.|++++|+|......+    +.
T Consensus        37 ~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~----~~  112 (363)
T PF00155_consen   37 FLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAA----RL  112 (363)
T ss_dssp             CTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHH----HH
T ss_pred             cccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCccccccccc----cc
Confidence            34455554 7889999999988        34378888888 5555556566 569999999999999877544    45


Q ss_pred             CCcEEEEeC-------CCCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHH---HHHHHHHhcCCEEEEecCCCC
Q 013019          273 MGITATVID-------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFAT  337 (451)
Q Consensus       273 ~Gi~v~~vd-------~~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~---~IaelA~~~g~~lVVD~tfa~  337 (451)
                      .|+++..++       ..|+++|++.+++.     ++++|++++|+||||.+.+.+   +|+++|+++|+++|+|++|..
T Consensus       113 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~  192 (363)
T PF00155_consen  113 LGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSD  192 (363)
T ss_dssp             TTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred             cCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceec
Confidence            577766665       34899999988762     378999999999999998755   555559999999999999876


Q ss_pred             CCcccc--------ccCCC-cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh-----
Q 013019          338 PLNQKA--------LSLGA-DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-----  403 (451)
Q Consensus       338 ~~~~~p--------l~~Ga-DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL-----  403 (451)
                      ......        .+.+. .+++.|+||.++.+| ++.|++++++++++.++.....+..  +...+.++...+     
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~  269 (363)
T PF00155_consen  193 LIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRRFQRSGLS--SSPMQAAAAAALSDPEL  269 (363)
T ss_dssp             GBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHH
T ss_pred             cccCCCccCcccccccccccceeeeeccccccccc-cccccccchhhhhhhhhhccccccc--cchhhHHHHHhhhcccc
Confidence            543321        12233 489999999998776 5689999999999999987766544  333332222211     


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          404 --KTLHLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       404 --~tl~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                        +.+..+.++..++.+.+.+.|++. ++
T Consensus       270 ~~~~~~~~~~~l~~~~~~l~~~L~~~-~~  297 (363)
T PF00155_consen  270 VEKWLEELRERLRENRDLLREALEEI-GI  297 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT-TS
T ss_pred             cccccccchhhHHHHHHHHHHHHHHh-hh
Confidence              255667778888899999999877 44

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=6.9e-20  Score=188.44  Aligned_cols=220  Identities=14%  Similarity=0.194  Sum_probs=155.2

Q ss_pred             cCCCchhHHHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHHccCCC-eEEEcCCCCcchHHHHHHhhhcC
Q 013019          205 GRYGNPTTVVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGG-HIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~g--------a-e~~vv~sSG~-aAi~~al~all~~GD-~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      .+|+.+....|+++|+++++        . .+.|++++|+ +++..++.+++.+|| +|++++|+|.....    .++..
T Consensus        61 ~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~----~~~~~  136 (374)
T PRK02610         61 NRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGI----LAQTL  136 (374)
T ss_pred             cCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHH----HHHHc
Confidence            45566667789999999886        2 2346666666 888888888888886 89999999987553    44566


Q ss_pred             CcEEEEeC------CCCHHHHHHhhcC---CCeEEEEEeCCCCCccccccHHHHHHHHHh-cCCEEEEecCCCCCCcccc
Q 013019          274 GITATVID------PADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKA  343 (451)
Q Consensus       274 Gi~v~~vd------~~D~d~Le~ai~~---~~tklV~lesPsNPtG~v~DL~~IaelA~~-~g~~lVVD~tfa~~~~~~p  343 (451)
                      |+++..++      ..|+++|++++++   .++++|++++|+||||.+++.+++.++++- +|++||+||+|........
T Consensus       137 g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~  216 (374)
T PRK02610        137 GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTL  216 (374)
T ss_pred             CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccch
Confidence            77776664      2368899988864   359999999999999999987766666532 4899999999875422111


Q ss_pred             ---cc-CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHH
Q 013019          344 ---LS-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNST  416 (451)
Q Consensus       344 ---l~-~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~n  416 (451)
                         +. ...-+++.|+||.++.+| ++.||+++++++++++...+..++  ++.....++...+   +.+..++++..+.
T Consensus       217 ~~~~~~~~~~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  293 (374)
T PRK02610        217 VGELAQHPNWVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEKVRLPYN--LPSFSQLAAQLALEHRQELLAAIPEILQE  293 (374)
T ss_pred             HHHHhcCCCEEEEEecchhccCcc-cceeeeecCHHHHHHHHHhcCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence               11 112488999999998877 678999999999999887764333  3444444333333   3333445555556


Q ss_pred             HHHHHHHHHcCCCeE
Q 013019          417 ALRMAEILEAHPKVL  431 (451)
Q Consensus       417 A~~Lae~L~~~p~V~  431 (451)
                      ...+.+.|++++++.
T Consensus       294 r~~l~~~L~~~~~~~  308 (374)
T PRK02610        294 RDRLYQALQELPQLR  308 (374)
T ss_pred             HHHHHHHHHhCCCcE
Confidence            667788888776653

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.85  E-value=1.6e-19  Score=186.64  Aligned_cols=218  Identities=16%  Similarity=0.172  Sum_probs=158.0

Q ss_pred             hHHHHHHHHHhhhCCC--cEEE-eCCHHHHHHHHHHHH----ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          211 TTVVVEEKMSALEGAE--STVI-MASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae--~~vv-~sSG~aAi~~al~al----l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ..+.+++.+++++|.+  +.++ ++++++++..++.++    +++||+|+++++.|.+.+..+...++..|+++.+++. 
T Consensus        61 ~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  140 (398)
T TIGR03392        61 RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG  140 (398)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC
Confidence            3567899999999973  3454 555669999998887    4789999999999988665555566778999888753 


Q ss_pred             ----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcc
Q 013019          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (451)
Q Consensus       283 ----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK  357 (451)
                          .|+++++++++++ |++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .....+++|+++.|++|
T Consensus       141 ~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K  219 (398)
T TIGR03392       141 ADLLPDIRQLPELLTPR-TRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHK  219 (398)
T ss_pred             CCCCcCHHHHHHHhccC-ceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEeccc
Confidence                3789999999875 99999999999999999999999999999999999999865422 22234679999999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHhH---------------------hhCCCccHHHHHHHHHhhHHH-----HHHHH
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTL-----HLRVQ  411 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~~---------------------~~G~~ls~~~a~l~lrgL~tl-----~~Rl~  411 (451)
                      .++..|   .|+++.++++++++.....                     .-.++.+......+..+++.+     ....+
T Consensus       220 ~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~  296 (398)
T TIGR03392       220 LYGPTG---IGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEA  296 (398)
T ss_pred             ccCCCc---eEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            887655   7899999888776643210                     001122222222222333332     12234


Q ss_pred             HHHHHHHHHHHHHHcCCCeEE
Q 013019          412 QQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      +..+.+..+.+.|++.|+++.
T Consensus       297 ~~~~l~~~l~~~l~~l~g~~~  317 (398)
T TIGR03392       297 WSVSLADLAEERLAQLPGFRS  317 (398)
T ss_pred             HHHHHHHHHHHHHhcCCCeEE
Confidence            455667788888888887753

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.85  E-value=2.5e-19  Score=184.37  Aligned_cols=220  Identities=16%  Similarity=0.216  Sum_probs=155.1

Q ss_pred             ccCCCchh-HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPT-TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt-~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +..|+.+. ...|++++++++|.  ++.+++++|++++..++.+++.+||+|+++++.|....    ..+...|.++..+
T Consensus        59 ~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~----~~~~~~g~~~~~v  134 (380)
T PRK06225         59 YCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIID----NFASRFGAEVIEV  134 (380)
T ss_pred             CCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchH----HHHHHhCceEEee
Confidence            34455554 67899999999986  45666777779999999999999999999999998644    3345567776655


Q ss_pred             CC--------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----ccc
Q 013019          281 DP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----ALS  345 (451)
Q Consensus       281 d~--------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----pl~  345 (451)
                      +.        .|+++++++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.......    .+.
T Consensus       135 ~~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  213 (380)
T PRK06225        135 PIYSEECNYKLTPELVKENMDEN-TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYA  213 (380)
T ss_pred             ccccccCCccCCHHHHHhhcCCC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcC
Confidence            42        3789999998874 899999999999999874   8899999999999999999974321111    111


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHH-HHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQ-QQNSTALRMA  421 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~-~~~~nA~~La  421 (451)
                      ....+++.|+||+++.+| ++.|+++++++++++++..... ....+...+..+...++   .+..++. ...++...+.
T Consensus       214 ~~~~i~~~s~SK~~g~~G-~RiG~i~~~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~  291 (380)
T PRK06225        214 PEHTVTSYSFSKIFGMAG-LRIGAVVATPDLIEVVKSIVIN-DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIK  291 (380)
T ss_pred             CCCEEEEeechhhcCCcc-ceeEEEecCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            134688899999997565 6789999999999888765421 12233443333333332   2222332 2345566677


Q ss_pred             HHHHcCCCe
Q 013019          422 EILEAHPKV  430 (451)
Q Consensus       422 e~L~~~p~V  430 (451)
                      +.|++.+++
T Consensus       292 ~~L~~~~~~  300 (380)
T PRK06225        292 EAVDEIEGV  300 (380)
T ss_pred             HHHHhCcCC
Confidence            788876654

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.85  E-value=4.6e-19  Score=183.02  Aligned_cols=210  Identities=15%  Similarity=0.121  Sum_probs=166.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      .|.++++|+.++++.|.+++++++||++|+..++.++ +++||+||+++++|.++...+    ...|.++.++|.     
T Consensus        30 g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~----~~~G~~~v~vd~d~~~~  105 (376)
T TIGR02379        30 GPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF----VLRGAKIVFVDIRPDTM  105 (376)
T ss_pred             cHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecCCCcC
Confidence            5778999999999999999999999999999998887 899999999999998876433    456888888764     


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC--CccccccCCCcEEEECCc--c
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--LNQKALSLGADLVLHSAT--K  357 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~--~~~~pl~~GaDiVv~S~S--K  357 (451)
                       .|++++++++++ ++++|+   |+||+|...|+++|.++|+++|++||+|++++.+  +..+++....|+.++|++  |
T Consensus       106 ~~d~~~le~~i~~-~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K  181 (376)
T TIGR02379       106 NIDETLIESAITH-RTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETK  181 (376)
T ss_pred             CCCHHHHHHhcCc-CceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCC
Confidence             368899999987 499986   6889999999999999999999999999997654  333333322488888864  4


Q ss_pred             cCCccccceeEEEEeC-HHHHHHHHHHhHh-------------------hC--CCccHHHHHHHHHhhHHHHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV-------------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNS  415 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~-------------------~G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~  415 (451)
                      .+...+  .||+++.+ +++.++++.++..                   .|  ..++...|.+++..|+.++...++..+
T Consensus       182 ~l~~g~--~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~  259 (376)
T TIGR02379       182 NYTSGG--EGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLA  259 (376)
T ss_pred             cCcccC--CceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHH
Confidence            454321  37776665 7888888866531                   12  224566777778889999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 013019          416 TALRMAEILEAHP  428 (451)
Q Consensus       416 nA~~Lae~L~~~p  428 (451)
                      +++.+.+.|.+.+
T Consensus       260 ~~~~y~~~L~~~~  272 (376)
T TIGR02379       260 TWQLYQDALKPLE  272 (376)
T ss_pred             HHHHHHHHhccCC
Confidence            9999999988765

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.85  E-value=5.3e-19  Score=177.45  Aligned_cols=254  Identities=20%  Similarity=0.202  Sum_probs=182.6

Q ss_pred             cCCccccCCCccCCHHHHHHHHhc--ccCCccccCCCch-hHHHHHHHHHhhhCC---CcEEEeC-CHHHHHHHHHHHHc
Q 013019          174 TTPVVNTSAYFFKKTAELIDFKEK--RRASFEYGRYGNP-TTVVVEEKMSALEGA---ESTVIMA-SGMSASTVMLLALV  246 (451)
Q Consensus       174 ~~Pi~~sst~~~~~~~~~~~~~~~--~~~~~~Y~R~~np-t~~~Lee~LA~l~ga---e~~vv~s-SG~aAi~~al~all  246 (451)
                      ..|+..+. ..|+...++.+....  +++.|.|+ +.+. ..+++.++..+.++-   ++.++++ +.+-++..+++++.
T Consensus        27 vlPmWVAD-MDf~~pp~i~~Al~~rvdhGvfGY~-~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T  104 (388)
T COG1168          27 VLPMWVAD-MDFPTPPEIIEALRERVDHGVFGYP-YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT  104 (388)
T ss_pred             cceeeeec-ccCCCCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC
Confidence            34666665 566777666554332  35668898 5554 788889999988873   3445555 45599999999999


Q ss_pred             cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cH
Q 013019          247 PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DV  315 (451)
Q Consensus       247 ~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL  315 (451)
                      ++||.|++..|.|.+.+..+.    ..|-++...+        ..|.++||+++.+.+++++++|+|+||+|++.   +|
T Consensus       105 ~~gd~Vvi~tPvY~PF~~~i~----~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL  180 (388)
T COG1168         105 KPGDGVVIQTPVYPPFYNAIK----LNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEEL  180 (388)
T ss_pred             cCCCeeEecCCCchHHHHHHh----hcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHH
Confidence            999999999999999886553    3344443332        13899999999877689999999999999997   48


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCCCccc----c---cc-CCC--cEEEECCcccCCccccceeEEEEeCHHHHHHHH-HHh
Q 013019          316 KLVSDLCHKKGAIVCIDGTFATPLNQK----A---LS-LGA--DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-NLH  384 (451)
Q Consensus       316 ~~IaelA~~~g~~lVVD~tfa~~~~~~----p---l~-~Ga--DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr-~~~  384 (451)
                      .+|.+||.+||+.||.||.++..+...    +   +. ..+  -|++.|.||.++..|...+-+|+.++++.++.. ++.
T Consensus       181 ~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~  260 (388)
T COG1168         181 RKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLK  260 (388)
T ss_pred             HHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHH
Confidence            889999999999999999987643211    1   11 112  378889999999888555666777887755543 333


Q ss_pred             HhhCCCccHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEE
Q 013019          385 HVLGGALNPNAAY----LIIRGMKTLHLRVQQQNSTALRMAEILEAH-PKVLLL  433 (451)
Q Consensus       385 ~~~G~~ls~~~a~----l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~-p~V~~V  433 (451)
                      ......++.+...    +-..|-.+|..-++-...|...++++|.++ |+|+-.
T Consensus       261 ~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~  314 (388)
T COG1168         261 RNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVT  314 (388)
T ss_pred             HhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence            3333444444321    123577788888888889999999999876 777543

>PRK08912 hypothetical protein; Provisional

Probab=99.85  E-value=1.4e-19  Score=186.67  Aligned_cols=217  Identities=18%  Similarity=0.221  Sum_probs=154.3

Q ss_pred             cCCCchh-HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          205 GRYGNPT-TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       205 ~R~~npt-~~~Lee~LA~l~----ga----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      .+|+.+. ..+|++++++++    |.    + +.++++++++++..++.+++++||+|++++|.|.....    .++..|
T Consensus        57 ~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g  132 (387)
T PRK08912         57 NQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLP----LIRRAG  132 (387)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH----HHHHcC
Confidence            3455443 456777777764    32    3 44555555699999999999999999999999987553    345667


Q ss_pred             cEEEEeCC------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----
Q 013019          275 ITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  341 (451)
Q Consensus       275 i~v~~vd~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----  341 (451)
                      +++..++.      .|++++++.+.+ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    
T Consensus       133 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~  211 (387)
T PRK08912        133 GVPRLVRLEPPHWRLPRAALAAAFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRH  211 (387)
T ss_pred             CEEEEEecCcccCcCCHHHHHHHhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCC
Confidence            77665542      368999998876 4899999999999999986   677899999999999999998542211    


Q ss_pred             ccc----c-CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHH
Q 013019          342 KAL----S-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQ  412 (451)
Q Consensus       342 ~pl----~-~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~  412 (451)
                      .++    . .+.++++.|+||.++.+| .+.|++++++++++.++......+...++.....+...+    +.+....++
T Consensus       212 ~~~~~~~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~  290 (387)
T PRK08912        212 IPLMTLPGMRERTVKIGSAGKIFSLTG-WKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRAD  290 (387)
T ss_pred             cChhhCCCccCceEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHH
Confidence            111    1 235799999999998676 678999999999998887665544333433333322222    233333455


Q ss_pred             HHHHHHHHHHHHHcC
Q 013019          413 QNSTALRMAEILEAH  427 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~  427 (451)
                      ..++.+.+.+.|+++
T Consensus       291 ~~~~~~~l~~~L~~~  305 (387)
T PRK08912        291 LARSRDRLAAGLRRI  305 (387)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            667778888888876

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.85  E-value=1.9e-19  Score=193.04  Aligned_cols=218  Identities=13%  Similarity=0.165  Sum_probs=147.1

Q ss_pred             CCchh-HHHHHHHHHhhh------CC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEE
Q 013019          207 YGNPT-TVVVEEKMSALE------GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  277 (451)
Q Consensus       207 ~~npt-~~~Lee~LA~l~------ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v  277 (451)
                      |+.+. ...|++.|++++      +. .+.|++++|+ +++..++.+++++||+|++++|.|.....    .+...|.++
T Consensus       181 Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~----~~~~~g~~~  256 (517)
T PRK13355        181 YSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTA----CVNLAGGTA  256 (517)
T ss_pred             CCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHH----HHHHCCCEE
Confidence            44443 677888888877      32 3445666655 89999999999999999999999987553    334557666


Q ss_pred             EEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----c
Q 013019          278 TVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K  342 (451)
Q Consensus       278 ~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~  342 (451)
                      ..++.       .|+++|+++++++ +++|++++|+||||.+++   +++|+++|++||++||+||+|......     .
T Consensus       257 v~~~~~~~~~~~~d~~~l~~~~~~~-~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s  335 (517)
T PRK13355        257 VHYRCDEQSEWYPDIDDIRSKITSR-TKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTS  335 (517)
T ss_pred             EEeecCcccCCCCCHHHHHHhcCcC-ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCccc
Confidence            55432       4789999999874 999999999999999997   788999999999999999998653211     1


Q ss_pred             cccCCCc---EEEECCcccCCccccceeEEEE--eCHHHH----HHHHHHhHhhCCCccHHHHHHHHHhhH------HHH
Q 013019          343 ALSLGAD---LVLHSATKFIGGHNDVLAGSIS--GSGKLV----TQIRNLHHVLGGALNPNAAYLIIRGMK------TLH  407 (451)
Q Consensus       343 pl~~GaD---iVv~S~SK~l~G~gdv~gG~Iv--~~~eli----~~lr~~~~~~G~~ls~~~a~l~lrgL~------tl~  407 (451)
                      ...+..+   +++.|+||.++.+| .+.||++  ++++++    +.+..... ...+.+....+++...|+      ...
T Consensus       336 ~~~~~~~~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~a~~~aL~~~~~~~~~~  413 (517)
T PRK13355        336 IASLAPDLFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAKDYIEGLNMLAN-MRLCSNVPAQSIVQTALGGHQSVKDYL  413 (517)
T ss_pred             HHHhCCCCeEEEEecchhhccCcc-cceEEEEeeCchhhHHHHHHHHHHHhc-CcCCcChHHHHHHHHHhcCCccHHHHH
Confidence            1122122   44689999998776 4678887  445443    33332222 222344444444433332      111


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          408 LRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      ....+..++...+.+.|++.|++.
T Consensus       414 ~~~~~~~~~r~~l~~~L~~~~g~~  437 (517)
T PRK13355        414 VPGGRVYEQRELVYNALNAIPGIS  437 (517)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcc
Confidence            223345556777888898876653

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.85  E-value=1.1e-19  Score=184.08  Aligned_cols=208  Identities=19%  Similarity=0.243  Sum_probs=148.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCC
Q 013019          205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD  284 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D  284 (451)
                      .||+.+. ..|+++|++.+|.++.++++++.+++..++  .+.+||+|++++|+|....    ..++..|+++..++.  
T Consensus        45 ~~yp~~~-~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~----~~~~~~g~~~~~v~~--  115 (330)
T PRK05664         45 ARLPETD-DGLEAAARAYYGAPQLLPVAGSQAAIQALP--RLRAPGRVGVLSPCYAEHA----HAWRRAGHQVRELDE--  115 (330)
T ss_pred             HhCCCCh-HHHHHHHHHHhCCCCEEECcCHHHHHHHHH--HccCCCEEEEcCCChHHHH----HHHHHcCCeEEEech--
Confidence            3455555 789999999999875554444448887765  4589999999999998865    345567888887764  


Q ss_pred             HHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcccc---cc-CCCcEEEECCcc
Q 013019          285 MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA---LS-LGADLVLHSATK  357 (451)
Q Consensus       285 ~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~p---l~-~GaDiVv~S~SK  357 (451)
                       ++++++++  +++++++++|+||||.+++   +++|+++|+++|++||+||+|.......+   +. ...-+++.|+||
T Consensus       116 -~~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK  192 (330)
T PRK05664        116 -AEVEAALD--SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGK  192 (330)
T ss_pred             -hhHhhhhc--CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccc
Confidence             45666664  3789999999999999987   45566667889999999999864322111   11 112488999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .++.+| ++.||+++++++++.++.....++  ++....+++...|.   ......++..++...+.+.|+++
T Consensus       193 ~~gl~G-lRiG~~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (330)
T PRK05664        193 FFGLAG-ARLGFVLAEPALLRALAELLGPWT--VSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH  262 (330)
T ss_pred             cccCCC-cceEEEEeCHHHHHHHHHhcCCCC--CCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            998776 678999999999999887654332  34444444444443   23333455566778888888876

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.85  E-value=1.6e-19  Score=188.84  Aligned_cols=223  Identities=18%  Similarity=0.188  Sum_probs=156.7

Q ss_pred             CCccccCC--CchhHHHHHH----HHHhhhCCCcEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhc
Q 013019          200 ASFEYGRY--GNPTTVVVEE----KMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK  272 (451)
Q Consensus       200 ~~~~Y~R~--~npt~~~Lee----~LA~l~gae~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~  272 (451)
                      .++.++|+  |+|+.+.||+    ++++++|.+.+++ ++||+.|+.+++.+++++||+|++++..|+++...- .....
T Consensus        58 ~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g-~~~~~  136 (416)
T PRK13034         58 EGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHG-AKVSL  136 (416)
T ss_pred             CCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecC-Cccee
Confidence            45677887  7899999999    9999999999966 589999999999999999999999999998742110 00000


Q ss_pred             CCcEE--EEeC------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-----C
Q 013019          273 MGITA--TVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----L  339 (451)
Q Consensus       273 ~Gi~v--~~vd------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-----~  339 (451)
                      .+...  ..++      ..|++++++.++..++++|+++.+.  +|...|+++|.++|+++|+++++|++++.+     .
T Consensus       137 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~  214 (416)
T PRK13034        137 SGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YPRELDFARFREIADEVGALLMVDMAHIAGLVAAGE  214 (416)
T ss_pred             ccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cccccCHHHHHHHHHHcCCEEEEeCcccccCcccCC
Confidence            11111  1222      2688999988854458999986655  578889999999999999999999996543     3


Q ss_pred             ccccccCCCcEEEECCcccCCccccceeEEEEeCHHH-HHHHHHHhHhhC---CCccHHHHHHHHHhhHHH----HHHHH
Q 013019          340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLG---GALNPNAAYLIIRGMKTL----HLRVQ  411 (451)
Q Consensus       340 ~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el-i~~lr~~~~~~G---~~ls~~~a~l~lrgL~tl----~~Rl~  411 (451)
                      ...++. ++|++++|++|+++|+.   ||+++++++. .++++... ..|   ....+..+.+.+..++.+    ..+.+
T Consensus       215 ~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~  289 (416)
T PRK13034        215 HPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINSAV-FPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAK  289 (416)
T ss_pred             CCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHhhc-CCcccCCccHHHHHHHHHHHHHHhChhHHHHHH
Confidence            233443 58999999999998875   7888886654 44444432 222   122333333332222222    33468


Q ss_pred             HHHHHHHHHHHHHHcCCCeE
Q 013019          412 QQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~V~  431 (451)
                      +..+|++++++.|++. ++.
T Consensus       290 ~l~~~a~~l~~~L~~~-G~~  308 (416)
T PRK13034        290 QVIANAQALAEVLKER-GYD  308 (416)
T ss_pred             HHHHHHHHHHHHHHHc-CCE
Confidence            8889999999999876 443

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.85  E-value=1.7e-19  Score=185.06  Aligned_cols=218  Identities=21%  Similarity=0.240  Sum_probs=169.0

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      .+..++||+++++++|.+.++.++||+.|+.+++.++ +++||+|+++..+|..+...    +...|.++.++|.     
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~a----i~~~G~~pv~~Di~~~~~   99 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASA----ILWAGAEPVFVDIDPETL   99 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHH----HHHTT-EEEEE-BETTTS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHH----HHHhccEEEEEeccCCcC
Confidence            5889999999999999999999999999999999998 68999999999999887743    4457999999884     


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC--ccccccCCCcEEEECC--cc
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVLHSA--TK  357 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~--~~~pl~~GaDiVv~S~--SK  357 (451)
                       .|+++++++++++ |++|++   .+..|...|+++|.++|+++|++||.|.+.+.+.  ..++...-.|+.++||  +|
T Consensus       100 ~id~~~~~~~i~~~-t~ai~~---~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K  175 (363)
T PF01041_consen  100 NIDPEALEKAITPK-TKAILV---VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTK  175 (363)
T ss_dssp             SB-HHHHHHHHHTT-EEEEEE---E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTS
T ss_pred             CcCHHHHHHHhccC-ccEEEE---ecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCC
Confidence             3799999999985 999986   6778999999999999999999999999977653  3333222259999997  69


Q ss_pred             cCCccccceeEEEEeCH-HHHHHHHHHhHh---------------hC--CCccHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGSG-KLVTQIRNLHHV---------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALR  419 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~---------------~G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~  419 (451)
                      .+....   ||+|++++ ++.++++.++..               .|  ..++++.|.+++..|+.++.++++..+++..
T Consensus       176 ~i~~ge---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~  252 (363)
T PF01041_consen  176 IITTGE---GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQR  252 (363)
T ss_dssp             SS-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCcCCC---CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            986553   89988864 677777765531               11  3478889999999999999999999999999


Q ss_pred             HHHHHHcCCCeEEEecCC
Q 013019          420 MAEILEAHPKVLLLFITL  437 (451)
Q Consensus       420 Lae~L~~~p~V~~V~yPg  437 (451)
                      +.+.|.+.+.+.....+.
T Consensus       253 y~~~L~~~~~~~~~~~~~  270 (363)
T PF01041_consen  253 YREALAGIPGIKPPPIPD  270 (363)
T ss_dssp             HHHHHTTGTTEEEEGCGT
T ss_pred             HHHHHhcCCCcccccccc
Confidence            999999999886654443

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK07683 aminotransferase A; Validated

Probab=99.85  E-value=4e-19  Score=183.57  Aligned_cols=213  Identities=14%  Similarity=0.180  Sum_probs=153.3

Q ss_pred             chhHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          209 NPTTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       209 npt~~~Lee~LA~l~----ga----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      .+....|++.+++++    |.    + +.++++++++|+..++.+++++||+|++++|+|..+...+    ...|+++.+
T Consensus        64 ~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~  139 (387)
T PRK07683         64 NAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPII----RLCGAKPVF  139 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHH----HHcCCEEEE
Confidence            344567888888876    32    3 4455555569999999999999999999999999865433    456888777


Q ss_pred             eCCC------CHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---c-ccC
Q 013019          280 IDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LSL  346 (451)
Q Consensus       280 vd~~------D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---p-l~~  346 (451)
                      ++..      |.+++++.++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.......   + ..+
T Consensus       140 ~~~~~~~~~~~~~~l~~~~~~~-~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  218 (387)
T PRK07683        140 IDTRSTGFRLTAEALENAITEK-TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHF  218 (387)
T ss_pred             eecCcccCCCCHHHHHHhcCcC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhc
Confidence            7532      568899988764 899999999999999875   7889999999999999999987543211   1 111


Q ss_pred             ----CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 013019          347 ----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTAL  418 (451)
Q Consensus       347 ----GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA~  418 (451)
                          +-.+++.|+||.++.+| ++.||+++++++++++...........+...+..+...+    ..+....++..++..
T Consensus       219 ~~~~~~vi~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  297 (387)
T PRK07683        219 PEMREKTIVINGLSKSHSMTG-WRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRD  297 (387)
T ss_pred             cCCcCCeEEEeeccccccCcc-ceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence                24588999999998776 689999999999998887654333334444433333333    223333445566777


Q ss_pred             HHHHHHHcC
Q 013019          419 RMAEILEAH  427 (451)
Q Consensus       419 ~Lae~L~~~  427 (451)
                      .+.+.|.++
T Consensus       298 ~~~~~l~~~  306 (387)
T PRK07683        298 YVYNRLISM  306 (387)
T ss_pred             HHHHHHHHc
Confidence            788888764

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.85  E-value=2e-19  Score=186.43  Aligned_cols=215  Identities=15%  Similarity=0.134  Sum_probs=149.9

Q ss_pred             chhHHHHHHHHHhhhC-------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          209 NPTTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       209 npt~~~Lee~LA~l~g-------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      .+....|+++++++++       .++.++++++++++..++.+++++||+|++++|.|....    ..+...|+++..++
T Consensus        72 ~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~----~~~~~~g~~v~~~~  147 (401)
T TIGR01264        72 TVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYE----TLAESMGIEVKLYN  147 (401)
T ss_pred             CCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHH----HHHHHcCCEEEEee
Confidence            3445678888888876       244555555669999999999999999999999998654    34456677776653


Q ss_pred             C-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc-cC
Q 013019          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-SL  346 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl-~~  346 (451)
                      .       .|+++++++++++ +++|++++|+||||.+++   +++|+++|+++|+++|+|++|......    .++ .+
T Consensus       148 ~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  226 (401)
T TIGR01264       148 LLPDKSWEIDLKQLESLIDEK-TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASL  226 (401)
T ss_pred             cCCccCCCCCHHHHHHHhccC-ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHc
Confidence            2       4789999988764 899999999999999985   788999999999999999998653211    111 11


Q ss_pred             ---CCcEEEECCcccCCccccceeEEEEeCH------HHHHHHHHHhHhhCCCccHHHHHHHHHhh-----HHHHHHHHH
Q 013019          347 ---GADLVLHSATKFIGGHNDVLAGSISGSG------KLVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQQ  412 (451)
Q Consensus       347 ---GaDiVv~S~SK~l~G~gdv~gG~Iv~~~------eli~~lr~~~~~~G~~ls~~~a~l~lrgL-----~tl~~Rl~~  412 (451)
                         +-.+++.|+||.++.+| ++.||+++++      ++++.++..... ....+......+...|     +.+....++
T Consensus       227 ~~~~~vi~~~SfSK~~~~~G-lRiG~iv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~  304 (401)
T TIGR01264       227 SSTVPILSCGGLAKRWLVPG-WRLGWIIIHDRRGILRDIRDGLVKLSQR-ILGPCTIVQGALPSILLRTPQEYFDGTLSV  304 (401)
T ss_pred             CCCCcEEEEccCcccCCCcc-ceEEEEEecCcchhHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHhCcHHHHHHHHHH
Confidence               12478999999988777 6789988763      344444443321 1223333333333333     234444566


Q ss_pred             HHHHHHHHHHHHHcCCCe
Q 013019          413 QNSTALRMAEILEAHPKV  430 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~p~V  430 (451)
                      ..++.+.+.+.|+++|++
T Consensus       305 ~~~~r~~l~~~L~~~~~~  322 (401)
T TIGR01264       305 LESNAMLCYGALAAVPGL  322 (401)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            667778888999887654

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PLN02368 alanine transaminase

Probab=99.85  E-value=3.6e-19  Score=185.69  Aligned_cols=221  Identities=14%  Similarity=0.164  Sum_probs=152.4

Q ss_pred             CCCchh-HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHc-cCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          206 RYGNPT-TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~----ga---e~~vv~sSG~-aAi~~al~all-~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      +|+.+. ...|++.|++++    |.   ++.+++++|. +++..++.+++ ++||+|++++|+|......+    ...|.
T Consensus       102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~----~~~g~  177 (407)
T PLN02368        102 AYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATI----SLLGG  177 (407)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHH----HHcCC
Confidence            344332 346777777665    52   3455566655 89999999988 79999999999999866443    44566


Q ss_pred             EEEEeC-------CCCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc
Q 013019          276 TATVID-------PADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN  340 (451)
Q Consensus       276 ~v~~vd-------~~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~  340 (451)
                      ++..++       ..|+++|++++++     .++++|++++|+||||.+++   +++|+++|++||++||+||+|.....
T Consensus       178 ~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y  257 (407)
T PLN02368        178 TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIY  257 (407)
T ss_pred             EEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence            655542       2478999998863     14899999999999999986   56788889999999999999865432


Q ss_pred             -c----cc-c----c-------CCCcEEEECCcccC-CccccceeEEEE---eCHHHHHHHHHHhHhhCCCccHHHHHHH
Q 013019          341 -Q----KA-L----S-------LGADLVLHSATKFI-GGHNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYLI  399 (451)
Q Consensus       341 -~----~p-l----~-------~GaDiVv~S~SK~l-~G~gdv~gG~Iv---~~~eli~~lr~~~~~~G~~ls~~~a~l~  399 (451)
                       .    .+ .    .       .+.-|+++|+||.+ +.+| .+.||++   +++++++++...... ..+.+....+++
T Consensus       258 ~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~G-lRiGy~i~~~~~~~li~~~~~~~~~-~~~~~~~~Q~aa  335 (407)
T PLN02368        258 QDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVEEIYKVASI-ALSPNVSGQIFM  335 (407)
T ss_pred             CCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCc-cceEEEEEeCCCHHHHHHHHHHhcc-cCCCCcHHHHHH
Confidence             1    11 0    1       11348889999998 5555 5688888   488899888876432 223444444444


Q ss_pred             HHhhH--------------HHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          400 IRGMK--------------TLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       400 lrgL~--------------tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      ...++              .+...++...+++..+.+.|++.|++..
T Consensus       336 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~  382 (407)
T PLN02368        336 GLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVC  382 (407)
T ss_pred             HHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEe
Confidence            43332              1122345667778889999999887644

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.85  E-value=3.3e-19  Score=185.15  Aligned_cols=216  Identities=16%  Similarity=0.150  Sum_probs=153.2

Q ss_pred             chhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          209 NPTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       209 npt~~~Lee~LA~l~ga--------e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ......|++.++++++.        ++.+++++|++|+..++.+++.+||+|++++|.|....    ..+...|+++..+
T Consensus        72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~~  147 (403)
T TIGR01265        72 SVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYD----TRAAFSGLEVRLY  147 (403)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHH----HHHHHcCCEEEEe
Confidence            34456788888888763        44566666679999999999999999999999998644    3345567777765


Q ss_pred             CC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----cc-c
Q 013019          281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL-S  345 (451)
Q Consensus       281 d~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----pl-~  345 (451)
                      +.       .|+++++++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.......    ++ .
T Consensus       148 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~  226 (403)
T TIGR01265       148 DLLPEKDWEIDLDGLEALADEK-TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMAS  226 (403)
T ss_pred             cCCcccCCccCHHHHHHHhCcC-ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhh
Confidence            42       3689999988764 899999999999999986   8889999999999999999987543211    11 1


Q ss_pred             C---CCcEEEECCcccCCccccceeEEEEeC-H-H-----HHHHHHHHhHhhCCCccHHHHHHHHHhh-----HHHHHHH
Q 013019          346 L---GADLVLHSATKFIGGHNDVLAGSISGS-G-K-----LVTQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRV  410 (451)
Q Consensus       346 ~---GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~-e-----li~~lr~~~~~~G~~ls~~~a~l~lrgL-----~tl~~Rl  410 (451)
                      +   .--+++.|+||.++.+| ++.||+++. + +     +++.+...... ....+.+.+..+...+     +.+....
T Consensus       227 ~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~  304 (403)
T TIGR01265       227 FASIVPVLSLGGISKRWVVPG-WRLGWIIIHDPHGIFRDTVLQGLKNLLQR-ILGPATIVQGALPDILENTPQEFFDGKI  304 (403)
T ss_pred             hccCCcEEEEeecccccCCCc-ceEEEEEEeCchhhhHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHhChHHHHHHHH
Confidence            1   12478899999988877 678888763 2 3     33334433321 2233444444433333     2344456


Q ss_pred             HHHHHHHHHHHHHHHcCCCeE
Q 013019          411 QQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      ++..++...+.+.|+++|++.
T Consensus       305 ~~~~~~~~~l~~~L~~~~~~~  325 (403)
T TIGR01265       305 SVLKSNAELCYEELKDIPGLV  325 (403)
T ss_pred             HHHHHHHHHHHHHHhcCCCce
Confidence            667788888999999887664

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.85  E-value=2e-19  Score=187.80  Aligned_cols=167  Identities=19%  Similarity=0.266  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHhhhCCC--cEEE-eCCHHHHHHHHHHH----HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          211 TTVVVEEKMSALEGAE--STVI-MASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae--~~vv-~sSG~aAi~~al~a----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ..+++++.|++++|.+  +.++ ++++++++..++.+    .+++||+|+++++.|++.+..+....+..|+++.+++. 
T Consensus        77 ~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~  156 (424)
T PLN02855         77 AYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT  156 (424)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecC
Confidence            3568899999999972  3455 45556888888765    36889999999999998776666667778998887753 


Q ss_pred             ----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcc
Q 013019          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (451)
Q Consensus       283 ----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK  357 (451)
                          .|++++++++++ ++++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .+..++|+|+++.|++|
T Consensus       157 ~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K  235 (424)
T PLN02855        157 PDEVLDVEQLKELLSE-KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHK  235 (424)
T ss_pred             CCCCcCHHHHHHHhcc-CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeeccc
Confidence                378999999987 499999999999999999999999999999999999999865422 23335689999999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIR  381 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr  381 (451)
                      +++++|   .|+++.++++++++.
T Consensus       236 ~~gp~G---~G~l~~~~~~~~~~~  256 (424)
T PLN02855        236 MCGPTG---IGFLWGKSDLLESMP  256 (424)
T ss_pred             ccCCCc---cEEEEEchhhhhcCC
Confidence            766554   789999988877654

>PRK10534 L-threonine aldolase; Provisional

Probab=99.85  E-value=2.5e-19  Score=180.73  Aligned_cols=217  Identities=17%  Similarity=0.220  Sum_probs=154.9

Q ss_pred             ccCC-CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCC-cEEEEeC
Q 013019          204 YGRY-GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG-ITATVID  281 (451)
Q Consensus       204 Y~R~-~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~G-i~v~~vd  281 (451)
                      ..+| ++|...+|+++|++++|.+..+++++|++++..++.+++.+||+|+++.+.|...+...  .....+ +++..++
T Consensus        27 ~~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~  104 (333)
T PRK10534         27 DDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLYEAG--GAAVLGSIQPQPID  104 (333)
T ss_pred             CcccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhcCCCCeeEEechhhhhHhcCC--chHHhcCceEEeec
Confidence            3456 78999999999999999988899999999999888899999999999887774322110  011222 4444442


Q ss_pred             -----CCCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHH---HHHHHHHhcCCEEEEecCCCCCC----c--cc
Q 013019          282 -----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPL----N--QK  342 (451)
Q Consensus       282 -----~~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~---~IaelA~~~g~~lVVD~tfa~~~----~--~~  342 (451)
                           ..|+++|+++++++     ++++|++++|+  +|.+.+++   +|.++|+++|++|++||+|....    .  ..
T Consensus       105 ~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~  182 (333)
T PRK10534        105 AAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELK  182 (333)
T ss_pred             CCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHH
Confidence                 23789999998652     48999999876  49988765   55678899999999999854210    0  01


Q ss_pred             cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCcc--HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 013019          343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN--PNAAYLIIRGMKTLHLRVQQQNSTALRM  420 (451)
Q Consensus       343 pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls--~~~a~l~lrgL~tl~~Rl~~~~~nA~~L  420 (451)
                      .+..+.|.++.|+||.++..   +||+++++++++++++..+..++..++  ...+......|+....++++..++++++
T Consensus       183 ~~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r~~l  259 (333)
T PRK10534        183 EITQYCDSFTICLSKGLGTP---VGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWL  259 (333)
T ss_pred             HHHhcCCEEEEEeEcCCCCc---ccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            11123576777999988764   466888999999999988876664433  2334444455555455666777778899


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|+++
T Consensus       260 ~~~L~~~  266 (333)
T PRK10534        260 AEQLREA  266 (333)
T ss_pred             HHHHHhC
Confidence            9999986

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.85  E-value=1.1e-19  Score=186.74  Aligned_cols=215  Identities=16%  Similarity=0.274  Sum_probs=153.9

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--
Q 013019          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--  281 (451)
                      +|+.+....|+++||++++. ++.|++++|. +++..++.+++++||+|++++|+|......+    ...|.++..++  
T Consensus        63 ~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~----~~~g~~~~~vp~~  138 (369)
T PRK08153         63 KYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHV----AGFGGRLVTVPYR  138 (369)
T ss_pred             cCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHH----HHcCCeEEEeeCC
Confidence            35555577899999999986 3566677776 8888888888999999999999998755333    33566665543  


Q ss_pred             --CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh--cCCEEEEecCCCCCCcc---cccc--CCCcEEE
Q 013019          282 --PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ---KALS--LGADLVL  352 (451)
Q Consensus       282 --~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~---~pl~--~GaDiVv  352 (451)
                        ..|++++++.+...++++|++++|+||||.+.+.+++.++++.  +|++||+||+|......   .++.  ....+++
T Consensus       139 ~~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~  218 (369)
T PRK08153        139 DDREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRM  218 (369)
T ss_pred             CCCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEE
Confidence              3467888776654458999999999999999998887777764  38999999998643221   1111  1234889


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .|+||.++.+| ++.||+++++++++.+...+..++  +++..++.+...++   .+....+...++...+.+.|+++
T Consensus       219 ~SfSK~~g~~G-lRiG~~v~~~~~~~~l~~~~~~~~--~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~  293 (369)
T PRK08153        219 RTFSKAYGLAG-ARVGYAIGAPGTIKAFDKVRNHFG--MNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN  293 (369)
T ss_pred             ecchHhccCcc-hheeeeecCHHHHHHHHHhhcCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999998666 678999999999998887665443  45665555444443   23333444556666777777765

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.85  E-value=3.2e-19  Score=184.54  Aligned_cols=211  Identities=14%  Similarity=0.152  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga-----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...|++.+++++    |.     ++.+++++|++|+.+++.+++++||+|++++|.|++....    ++..|+++..++.
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~----~~~~g~~~~~~~~  144 (391)
T PRK07309         69 LLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPI----VNLVGAEIVEIDT  144 (391)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHH----HHHcCCEEEEEec
Confidence            566777777765    32     2455555666999999999999999999999999986543    3456777766642


Q ss_pred             ------CCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----cc-cc-
Q 013019          283 ------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA-LS-  345 (451)
Q Consensus       283 ------~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~p-l~-  345 (451)
                            .|+++|++++++  .++++|++++|+||||.+.+   +++|.++|++||+++|+|++|......    .+ .. 
T Consensus       145 ~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~  224 (391)
T PRK07309        145 TENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEY  224 (391)
T ss_pred             CCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHh
Confidence                  368899988864  24899999999999999875   888999999999999999998753321    11 11 


Q ss_pred             -CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Q 013019          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  420 (451)
Q Consensus       346 -~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~L  420 (451)
                       ....+++.|+||.++.+| ++.|+++++++++++++..........+......+...++.    .....++..++...+
T Consensus       225 ~~~~~i~~~S~SK~~g~~G-lRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  303 (391)
T PRK07309        225 LPDQTILINGLSKSHAMTG-WRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYI  303 (391)
T ss_pred             ccCCEEEEecChhhccCcc-ceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHH
Confidence             123488999999998776 67999999999999988765443334455544444444432    212233445666677


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|+++
T Consensus       304 ~~~l~~~  310 (391)
T PRK07309        304 IEKMTDL  310 (391)
T ss_pred             HHHHHHC
Confidence            7888775

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.85  E-value=5.4e-20  Score=187.35  Aligned_cols=191  Identities=15%  Similarity=0.227  Sum_probs=144.9

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      .+|+.+...+|++.+++++|.  ++.+++++|+ +++..++.+++++||+|++++|.|....    ..++..|+++..++
T Consensus        64 ~~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~----~~~~~~g~~~~~~~  139 (361)
T PRK00950         64 HRYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYE----ISAKAHGAKPVYAK  139 (361)
T ss_pred             cCCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCEEEEee
Confidence            456667778999999999986  3344447887 6788888888899999999999887643    33456688877664


Q ss_pred             -----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--ccc--cCCCcEEE
Q 013019          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KAL--SLGADLVL  352 (451)
Q Consensus       282 -----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--~pl--~~GaDiVv  352 (451)
                           ..|++++++++++ ++++|++++|+||||.+.++++|.++|+++|+++|+|++|......  .++  .....+++
T Consensus       140 ~~~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~  218 (361)
T PRK00950        140 REEDFSLDVDSVLNAITE-KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIG  218 (361)
T ss_pred             cCCCCCcCHHHHHHHhcc-CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEE
Confidence                 3468899998876 4899999999999999999999999999999999999998643211  111  11234788


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM  403 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL  403 (451)
                      .|+||.++.+| ++.|++++++++++.++.....++  ++......+...+
T Consensus       219 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l  266 (361)
T PRK00950        219 RTFSKVFGLAG-LRIGYGFVPEWLIDYYMRAKTPFS--LTRLSQAAAIAAL  266 (361)
T ss_pred             EeehHhhcCch-hhcchhcCCHHHHHHHHHhcCCCC--CCHHHHHHHHHHh
Confidence            99999998776 678999999999988887665443  3444444444443

>PRK09082 methionine aminotransferase; Validated

Probab=99.85  E-value=2.4e-19  Score=185.03  Aligned_cols=210  Identities=18%  Similarity=0.168  Sum_probs=151.6

Q ss_pred             HHHHHHHHHhhhCC----CcEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          212 TVVVEEKMSALEGA----ESTVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       212 ~~~Lee~LA~l~ga----e~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ++++.+.+.+++|.    +..+++ ++|++|+..++.+++.+||+|++++|.|......+    +..|.++..++.    
T Consensus        73 r~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~----~~~g~~~~~~~~~~~~  148 (386)
T PRK09082         73 REAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAI----ELAGGRAVRVALQPPD  148 (386)
T ss_pred             HHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHH----HHcCCEEEEEecCccc
Confidence            45566666666664    224555 55569999999999999999999999999865433    445777666653    


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCc-c----cccc----CCC
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN-Q----KALS----LGA  348 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~-~----~pl~----~Ga  348 (451)
                        .|+++++++++++ +++|++++|+||||.+.   ++++|.++|+++|+++|+|++|..... .    ....    ...
T Consensus       149 ~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~  227 (386)
T PRK09082        149 FRVDWQRFAAAISPR-TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRER  227 (386)
T ss_pred             ccCCHHHHHHhcCcc-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCc
Confidence              3788999999774 89999999999999884   688999999999999999999864321 1    1111    134


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      .+++.|+||.++.+| ++.|++++++++++.++..........+...+..+...++    .+....+...++...+.+.|
T Consensus       228 ~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L  306 (386)
T PRK09082        228 AFVVSSFGKTYHVTG-WKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAAL  306 (386)
T ss_pred             EEEEeechhhccchh-hhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999998776 6789999999999998887655444455554443333332    23333445567777888888


Q ss_pred             HcC
Q 013019          425 EAH  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +++
T Consensus       307 ~~~  309 (386)
T PRK09082        307 ANS  309 (386)
T ss_pred             HhC
Confidence            764

>PRK03321 putative aminotransferase; Provisional

Probab=99.85  E-value=4.6e-20  Score=187.58  Aligned_cols=215  Identities=18%  Similarity=0.250  Sum_probs=159.1

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          205 GRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~gae-~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+|+.+....|++.++++++.+ +.+++++|+ +++..++..++++||+|+++.+.|.....    .++..|.++..++.
T Consensus        52 ~~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~----~~~~~g~~~~~v~~  127 (352)
T PRK03321         52 NRYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPI----LVQVAGATPVQVPL  127 (352)
T ss_pred             CcCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHH----HHHHcCCEEEEccC
Confidence            4456677889999999999863 466777777 67777888889999999999998875432    34556777776654


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh--cCCEEEEecCCCCCCcc----cccc----CC
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KALS----LG  347 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~----~pl~----~G  347 (451)
                           .|++++++++++ ++++|++++|+||||.+.+.++|.++|++  +|+++|+|++|......    .++.    ..
T Consensus       128 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  206 (352)
T PRK03321        128 TPDHTHDLDAMAAAITD-RTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHP  206 (352)
T ss_pred             CCCCCCCHHHHHHhhcc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCC
Confidence                 368999999877 48999999999999999999999999987  59999999998643221    1111    12


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg---L~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      -.+++.|+||.++.+| ++.|++++++++++.++....  ....+.....++...   .+.+..++++..++...+.+.|
T Consensus       207 ~vi~~~S~SK~~g~~G-lRiG~~v~~~~~~~~~~~~~~--~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L  283 (352)
T PRK03321        207 NVVVLRTFSKAYGLAG-LRVGYAVGHPEVIAALRKVAV--PFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAAL  283 (352)
T ss_pred             CEEEEecchHHhhhHH-HhhhhhcCCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478899999998665 678999999999998887543  233455554433333   3445555666666667788888


Q ss_pred             HcC
Q 013019          425 EAH  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +++
T Consensus       284 ~~~  286 (352)
T PRK03321        284 RAA  286 (352)
T ss_pred             HHC
Confidence            875

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.84  E-value=2.3e-19  Score=186.27  Aligned_cols=219  Identities=16%  Similarity=0.169  Sum_probs=158.2

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCC-HHHHHHHHHHH----HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIMAS-GMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~sS-G~aAi~~al~a----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...++++++|++++|.  ++.+++++ +++++..++.+    ++++||+|+++++.|.+.+..+...++..|+++..++.
T Consensus        67 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~  146 (406)
T PRK09295         67 EKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPL  146 (406)
T ss_pred             HHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEec
Confidence            4466789999999986  34555554 55888888776    46889999999999988766665666778998888753


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~S  356 (451)
                           .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .+..++|+|+++.|++
T Consensus       147 ~~~~~~d~~~l~~~i~~~-t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~  225 (406)
T PRK09295        147 NPDGTLQLETLPALFDER-TRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGH  225 (406)
T ss_pred             CCCCCCCHHHHHHhcCCC-cEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehh
Confidence                 3789999999874 99999999999999999999999999999999999999876532 2222468999999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHHhH----------------------hhCCCccHHHHHHHHHhhHHHH-----HH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH----------------------VLGGALNPNAAYLIIRGMKTLH-----LR  409 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~~~----------------------~~G~~ls~~~a~l~lrgL~tl~-----~R  409 (451)
                      |+++++|   .|+++.++++++++.....                      ...++.+....+.+..+++.+.     ..
T Consensus       226 K~~gp~G---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i  302 (406)
T PRK09295        226 KLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNI  302 (406)
T ss_pred             hccCCCC---cEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHH
Confidence            9777665   6899988887766532100                      0111233323333333343322     22


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEE
Q 013019          410 VQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       410 l~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      .++..+.+..+.+.|++.++++.
T Consensus       303 ~~~~~~l~~~l~~~l~~~~~~~~  325 (406)
T PRK09295        303 AEYEQNLMHYALSQLESVPDLTL  325 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEE
Confidence            34444567778888888887744

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.84  E-value=2.9e-19  Score=183.43  Aligned_cols=212  Identities=17%  Similarity=0.192  Sum_probs=159.6

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      -.+.+++++++++++.|.+..+++++|++++..++.+++++||.|+++++.|+.....    +...|+++..++..|+++
T Consensus        76 ~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~  151 (385)
T TIGR01825        76 TLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDG----LRLTKATKKIYKHADMDD  151 (385)
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHH----HHhcCCceEEeCCCCHHH
Confidence            3567889999999999988889999999999989999999999999999999876432    233567776677778888


Q ss_pred             HHHhhcCC---CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc---------ccccCCCcEEEECC
Q 013019          288 LEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHSA  355 (451)
Q Consensus       288 Le~ai~~~---~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~---------~pl~~GaDiVv~S~  355 (451)
                      +++.+++.   ++++|+++++.||+|.+.++++|.++|++||+++|+|++|+.+...         -....+.|+++.|+
T Consensus       152 l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~  231 (385)
T TIGR01825       152 LDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTL  231 (385)
T ss_pred             HHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEec
Confidence            88877532   4899999999999999999999999999999999999998654221         11234678999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ||++++.    +|++++++++++.+.....  ..+...++...+.+..+++.+   ....++..++.+.+.+.|++.
T Consensus       232 sK~~~~~----gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  304 (385)
T TIGR01825       232 SKAIGVV----GGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL  304 (385)
T ss_pred             cHHhhcC----CCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999764    5899999999888876532  223333444444444444433   223455566677777777664

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.84  E-value=3.8e-19  Score=185.31  Aligned_cols=212  Identities=12%  Similarity=0.105  Sum_probs=144.6

Q ss_pred             hHHHHHHHHHhhhC------C-CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          211 TTVVVEEKMSALEG------A-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       211 t~~~Lee~LA~l~g------a-e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ....|+++|+++++      . ++.+++++| ++++..++.+++++||+|++++|.|......    +...|+++..++.
T Consensus        75 G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~----~~~~g~~~~~~~~  150 (409)
T PLN00143         75 GILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETY----AIFHHLEIRHFDL  150 (409)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHH----HHHcCCEEEEEec
Confidence            34567777777762      1 234445555 5999999999999999999999999886533    3445777665532


Q ss_pred             -------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----cccc-C-
Q 013019          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS-L-  346 (451)
Q Consensus       283 -------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl~-~-  346 (451)
                             .|+++|+++++++ ++++++++|+||||.+++   +++|+++|+++|+++|+|++|......    .++. + 
T Consensus       151 ~~~~~~~~d~~~l~~~~~~~-~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~  229 (409)
T PLN00143        151 LPEKGWEVDLDAVEAIADEN-TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFA  229 (409)
T ss_pred             cCCCCCcCCHHHHHHhcccC-CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhc
Confidence                   3789999988764 899999999999999987   677888899999999999998754221    1111 1 


Q ss_pred             --CCcEEEECCcccCCccccceeEEEEe-CH-HHH------HHHHHHhHhhCCCccHHHHHHHHHhh-----HHHHHHHH
Q 013019          347 --GADLVLHSATKFIGGHNDVLAGSISG-SG-KLV------TQIRNLHHVLGGALNPNAAYLIIRGM-----KTLHLRVQ  411 (451)
Q Consensus       347 --GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~-eli------~~lr~~~~~~G~~ls~~~a~l~lrgL-----~tl~~Rl~  411 (451)
                        ..-+++.|+||.++.+| .+.||+++ ++ .++      +.++..... ....+......+...|     ..+...++
T Consensus       230 ~~~~vi~~~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~  307 (409)
T PLN00143        230 SIVPVITLGSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKKALNP-APFPPTFIQAAIPEILEKTTEDFFSKTIN  307 (409)
T ss_pred             ccCcEEEEccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHHHHhc-cCCCCchHHHHHHHHHhcChHHHHHHHHH
Confidence              12488999999998887 67888887 33 343      223322221 1112333333333333     24555566


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 013019          412 QQNSTALRMAEILEAHPK  429 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~  429 (451)
                      +..++.+.+.+.|++++.
T Consensus       308 ~~~~~~~~~~~~L~~~~~  325 (409)
T PLN00143        308 ILRAALAFCYDKLKEIPC  325 (409)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            677777778888877653

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.84  E-value=3.7e-19  Score=183.70  Aligned_cols=213  Identities=14%  Similarity=0.176  Sum_probs=151.0

Q ss_pred             hHHHHHHHHHhhhC-------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          211 TTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       211 t~~~Lee~LA~l~g-------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ....|+++++++++       .++.+++++|++|+..++.+++++||+|++++|.|.....    .++..|+++..++. 
T Consensus        67 g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~v~~~  142 (397)
T PRK07568         67 GIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNG----FATSAGVKIVPVTTK  142 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHH----HHHHcCCEEEEeecC
Confidence            35678888888762       2455666666799999999999999999999999986543    34456777666542 


Q ss_pred             -------CCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCcc-----ccccC-
Q 013019          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSL-  346 (451)
Q Consensus       283 -------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~~-----~pl~~-  346 (451)
                             .++++|+++++++ +++|++++|+||||.+.   ++++|+++|+++|+++|+|++|......     ....+ 
T Consensus       143 ~~~g~~~~~~~~l~~~~~~~-~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~  221 (397)
T PRK07568        143 IEEGFHLPSKEEIEKLITPK-TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLE  221 (397)
T ss_pred             cccCCCCCCHHHHHHhcCcc-ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcC
Confidence                   2468899988764 89999999999999998   4788999999999999999998643211     11111 


Q ss_pred             ---CCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHH
Q 013019          347 ---GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTAL  418 (451)
Q Consensus       347 ---GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~  418 (451)
                         ...+++.|+||.++.+| .+.|++++ ++++++++...... ....+...+..+...++    .+....+...++..
T Consensus       222 ~~~~~~i~~~S~SK~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  299 (397)
T PRK07568        222 GLEDRVIIIDSVSKRYSACG-ARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRD  299 (397)
T ss_pred             CCcCCEEEEecchhhccCCC-cceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence               23488999999998776 57888887 46788776654332 22334444333333332    23334455667788


Q ss_pred             HHHHHHHcCCCe
Q 013019          419 RMAEILEAHPKV  430 (451)
Q Consensus       419 ~Lae~L~~~p~V  430 (451)
                      .+.+.|++++++
T Consensus       300 ~l~~~L~~~~~~  311 (397)
T PRK07568        300 ILYEELNKIPGV  311 (397)
T ss_pred             HHHHHHhcCCCc
Confidence            888999887665

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.84  E-value=3.1e-19  Score=183.31  Aligned_cols=211  Identities=18%  Similarity=0.177  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHH
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  289 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le  289 (451)
                      +.++++++++++++|.++.+++++|++++..++.+++++||+|+++++.|.+....+    ...+.++..++..|+++++
T Consensus        87 ~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~l~  162 (397)
T PRK06939         87 DLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMADLE  162 (397)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHH----HhcCCceEEeCCCCHHHHH
Confidence            567889999999999888999999999999999999999999999999998765433    3345565566667888888


Q ss_pred             HhhcC---C--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---------cccCCCcEEEECC
Q 013019          290 AALNN---N--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHSA  355 (451)
Q Consensus       290 ~ai~~---~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---------pl~~GaDiVv~S~  355 (451)
                      +++++   .  ++++|++++..|++|.+.++++|.++|+++|++||+|++|..++...         .+..+.|+++.|+
T Consensus       163 ~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~  242 (397)
T PRK06939        163 AQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTL  242 (397)
T ss_pred             HHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEEC
Confidence            88753   1  48899988889999999999999999999999999999986432211         1112468999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ||+++|.   ++|++++++++++.++....  .++....+..+..+...++.+   ....++..++.+.+.+.|+++
T Consensus       243 sK~~~g~---r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  316 (397)
T PRK06939        243 GKALGGA---SGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA  316 (397)
T ss_pred             HHHhCcc---CceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            9999764   47999999999988876432  223333444344333344433   334556667777888888765

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.84  E-value=3.3e-19  Score=182.21  Aligned_cols=221  Identities=16%  Similarity=0.197  Sum_probs=157.8

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae---~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      +...++++.|++++|.+   +.+++++|++++..++.+++++||+|++..+.|+++...+....+..|+++..++.    
T Consensus        44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  123 (376)
T TIGR01977        44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEG  123 (376)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCC
Confidence            56778999999999963   34555677799999999999999999999999988776665566667888887753    


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcccCC
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l~  360 (451)
                       .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......|+|+++.|++|+++
T Consensus       124 ~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~  202 (376)
T TIGR01977       124 LISPERIKRAIKT-NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLL  202 (376)
T ss_pred             CcCHHHHHHhcCC-CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEeccccccc
Confidence             378999999977 499999999999999999999999999999999999999875532 22234689999999999998


Q ss_pred             ccccceeEEEEeCHHHHHHHHHHh----------------HhhCCCccHHHHHHHHHhhHHH-----HHHHHHHHHHHHH
Q 013019          361 GHNDVLAGSISGSGKLVTQIRNLH----------------HVLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALR  419 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr~~~----------------~~~G~~ls~~~a~l~lrgL~tl-----~~Rl~~~~~nA~~  419 (451)
                      ++.. .|++++.++..+..+....                +...++.+....+.+..+++.+     ....+++.+.++.
T Consensus       203 ~p~g-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~  281 (376)
T TIGR01977       203 GPQG-TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEK  281 (376)
T ss_pred             CCCC-ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            7652 2344444443222111100                0001122222222223344333     2234566778888


Q ss_pred             HHHHHHcCCCeEE
Q 013019          420 MAEILEAHPKVLL  432 (451)
Q Consensus       420 Lae~L~~~p~V~~  432 (451)
                      +.+.|++.++++-
T Consensus       282 ~~~~l~~~~~~~~  294 (376)
T TIGR01977       282 LLNGLREINKVKI  294 (376)
T ss_pred             HHHHHhcCCCeEE
Confidence            8899988887643

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.84  E-value=2.2e-19  Score=185.68  Aligned_cols=219  Identities=20%  Similarity=0.220  Sum_probs=159.0

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHH----ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae---~~vv~sSG~aAi~~al~al----l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...+++++.+++++|.+   +.++++++++++..++.++    +++||+|+++++.|.+....+.......|+++++++.
T Consensus        62 ~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~  141 (403)
T TIGR01979        62 EAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPL  141 (403)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEec
Confidence            34568889999999974   3455555668888887764    5789999999999998766666666678988887753


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~S  356 (451)
                           .|+++++++++++ +++|++.+|+||+|.+.|+++|.++|+++|+++++|++++.+.. .+..++++|+++.|++
T Consensus       142 ~~~~~~~~~~l~~~i~~~-~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~  220 (403)
T TIGR01979       142 DDDGTLDLDDLEKLLTEK-TKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGH  220 (403)
T ss_pred             CCCCCCCHHHHHHHhccC-CeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecc
Confidence                 3789999999874 99999999999999999999999999999999999999876532 2333568999999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHHhH---------------------hhCCCccHHHHHHHHHhhHHH-----HHHH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTL-----HLRV  410 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~~~---------------------~~G~~ls~~~a~l~lrgL~tl-----~~Rl  410 (451)
                      |++++.|   .|+++.+++++++++....                     ...++.+....+.+..+++.+     ....
T Consensus       221 K~~gp~G---~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~  297 (403)
T TIGR01979       221 KMYGPTG---IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIE  297 (403)
T ss_pred             cccCCCC---ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHH
Confidence            9887555   7899888887776542110                     001122222222223333322     2234


Q ss_pred             HHHHHHHHHHHHHHHcCCCeEE
Q 013019          411 QQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      ++..+.++.+.+.|++.++++-
T Consensus       298 ~~~~~l~~~l~~~l~~~~g~~~  319 (403)
T TIGR01979       298 AHEHELTAYALERLGEIPGLRI  319 (403)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEE
Confidence            5556667778888888887743

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=1.3e-19  Score=184.02  Aligned_cols=213  Identities=17%  Similarity=0.212  Sum_probs=154.2

Q ss_pred             cccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      .+.+|+.+....|+++++++++. .+.+++++|+ +++..++..+  +||+|++++|.|+...    ......|+++..+
T Consensus        48 ~~~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~----~~~~~~g~~~~~v  121 (337)
T PRK03967         48 PFNRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF--EGKHIVITPPTFGMYS----FYAKLNGIPVIDV  121 (337)
T ss_pred             ccccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh--CCCeEEEeCCChHHHH----HHHHHcCCeEEEe
Confidence            36677777778899999999985 3566666666 7887766655  7999999999997533    2345567777766


Q ss_pred             CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc---cc-CCCcEE
Q 013019          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---LS-LGADLV  351 (451)
Q Consensus       281 d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p---l~-~GaDiV  351 (451)
                      +.     .|++.+++++ + +++++++++|+||||.+.+.++|.++++ +|+++|+|++|........   .. ..--++
T Consensus       122 ~~~~~~~~d~~~l~~~~-~-~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~  198 (337)
T PRK03967        122 PLKEDFTIDGERIAEKA-K-NASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLIL  198 (337)
T ss_pred             ecCCCCCcCHHHHHHhc-c-CCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEE
Confidence            43     4678888765 3 3789999999999999999999999995 7999999999875322111   11 123488


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +.|+||.++.+| ++.||++++++++++++.....++  .+.....++...+   +.+..+++...++...+.+.|.++
T Consensus       199 l~S~SK~~~l~G-lRiG~iv~~~~~i~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  274 (337)
T PRK03967        199 LRTFSKAFGLAG-IRAGYAIANEEIIDALYRIKPPFS--LNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY  274 (337)
T ss_pred             EecchHhhcchh-hhheeeecCHHHHHHHHhhcCCCC--CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            899999998676 678999999999999887765443  3444444433333   344445556666677778888764

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=1.2e-19  Score=186.02  Aligned_cols=217  Identities=18%  Similarity=0.168  Sum_probs=159.3

Q ss_pred             ccCCCchhHHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          204 YGRYGNPTTVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~----g--a-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      +.+|+++....|++.|++++    |  . .+.+++++|+ +++..++.+++++||.|+++.|+|......    +...|+
T Consensus        59 ~~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~----~~~~g~  134 (368)
T PRK03317         59 LNRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPII----ARGTHT  134 (368)
T ss_pred             hccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHhcCC
Confidence            45566666778999999987    3  2 3456666666 899999999999999999999999875533    344566


Q ss_pred             EEEEeC-----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc---cccc--
Q 013019          276 TATVID-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KALS--  345 (451)
Q Consensus       276 ~v~~vd-----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~---~pl~--  345 (451)
                      ++..++     ..|+++++++++++++++|++++|+||||.+.+.+++.++++..++++|+||+|......   ....  
T Consensus       135 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~  214 (368)
T PRK03317        135 EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL  214 (368)
T ss_pred             eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence            655443     247899999987545899999999999999999999999999999999999998643211   1111  


Q ss_pred             --CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Q 013019          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRM  420 (451)
Q Consensus       346 --~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~L  420 (451)
                        ....+++.|+||.++.+| ++.|++++++++++.++..+..+  ..++..+..+...+   +.+..++++..++...+
T Consensus       215 ~~~~~~i~~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~~~~~~--~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l  291 (368)
T PRK03317        215 PEYPRLVVSRTMSKAFAFAG-GRLGYLAAAPAVVDALRLVRLPY--HLSAVTQAAARAALRHADELLASVAALRAERDRV  291 (368)
T ss_pred             HhCCCEEEEEechhhhccch-hhhhhhhCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence              122478889999998666 67899999999999888665333  34555554444444   33444455666777778


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|+++
T Consensus       292 ~~~L~~~  298 (368)
T PRK03317        292 VAWLREL  298 (368)
T ss_pred             HHHHHHC
Confidence            8888876

>PRK09105 putative aminotransferase; Provisional

Probab=99.84  E-value=1.9e-19  Score=185.22  Aligned_cols=213  Identities=17%  Similarity=0.203  Sum_probs=153.0

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ++|+.+...+|++.|++.+|. ++.|++++| ++++..++.+++++||+|++++|.|.....    .++..|+++..++.
T Consensus        73 ~~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~----~~~~~g~~~~~v~~  148 (370)
T PRK09105         73 GRYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWR----AADAQGAPVAKVPL  148 (370)
T ss_pred             cCCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHH----HHHHcCCeEEEecC
Confidence            456666688899999999985 344555555 599999999999999999999999987653    34566777766642


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh--cCCEEEEecCCCCCCcc-ccc---cCC-CcE
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ-KAL---SLG-ADL  350 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~-~pl---~~G-aDi  350 (451)
                           .|++++++. .+ ++++|++++|+||||.+.+.++|.++++.  +|+++|+|++|...... ...   +.+ .-+
T Consensus       149 ~~~~~~d~~~l~~~-~~-~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi  226 (370)
T PRK09105        149 RADGAHDVKAMLAA-DP-NAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLI  226 (370)
T ss_pred             CCCCCCCHHHHHhc-CC-CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEE
Confidence                 467888776 34 48999999999999999998888888754  48999999998532111 111   112 237


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg---L~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++.|+||.++.+| ++.||++++++++++++.. .  ....+......+...   .+.+....++..++.+.+.+.|+++
T Consensus       227 ~~~SfSK~~g~~G-lRiG~~v~~~~~i~~l~~~-~--~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  302 (370)
T PRK09105        227 VLRTFSKLYGMAG-MRLGLAAARPDLLAKLARF-G--HNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK  302 (370)
T ss_pred             EEecccHhhcCCc-cceeeeecCHHHHHHHHhc-C--CCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            7889999998877 6789999999999888765 1  122333333333332   2334444566667788888888875

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.84  E-value=8.5e-20  Score=186.51  Aligned_cols=216  Identities=13%  Similarity=0.216  Sum_probs=157.9

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+.+....|++.++++++. .+.+++++|+ +++..++.+++++||+|++++|.|.....    .....|+++..++
T Consensus        61 ~~~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~~~~~~~  136 (367)
T PRK02731         61 LHRYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPI----AAQAVGAKPVEVP  136 (367)
T ss_pred             hcCCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHH----HHHHcCCeEEEec
Confidence            4566666677899999999986 3566777776 77888888899999999999999965432    2345688877765


Q ss_pred             C----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCCcc----cc---ccC-C
Q 013019          282 P----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQ----KA---LSL-G  347 (451)
Q Consensus       282 ~----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~~~----~p---l~~-G  347 (451)
                      .    .|++++++++++ ++++|++++|+||||.+.++++|.++++..  |+++|+|++|......    .+   ++. .
T Consensus       137 ~~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~  215 (367)
T PRK02731        137 AKDYGHDLDAMLAAVTP-RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFP  215 (367)
T ss_pred             ccCCCCCHHHHHHHhCC-CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcC
Confidence            3    478999999976 489999999999999999999999999874  8999999997643211    11   111 2


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      ..+++.|+||.++.+| .+.|+++++++++++++.....++  .+....+.+...++   .+....+...++...+.+.|
T Consensus       216 ~~i~~~S~SK~~g~~G-~RiG~l~~~~~~~~~l~~~~~~~~--~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L  292 (367)
T PRK02731        216 NVVVTRTFSKAYGLAG-LRVGYGIAPPEIIDALNRVRQPFN--VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFL  292 (367)
T ss_pred             CEEEEeeehHhhcCcc-cceeeeeCCHHHHHHHHHccCCCC--CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478889999987665 578999999999998887654443  34455444444443   23333344455666777888


Q ss_pred             HcC
Q 013019          425 EAH  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +++
T Consensus       293 ~~~  295 (367)
T PRK02731        293 AEL  295 (367)
T ss_pred             HHC
Confidence            776

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=2.1e-19  Score=182.45  Aligned_cols=213  Identities=16%  Similarity=0.159  Sum_probs=154.6

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+|+++....|++++|++++. .+.+++++| ++++..++.+++++||+|++++|.|.....    .++..|+++..++.
T Consensus        55 ~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~----~~~~~g~~~~~v~~  130 (353)
T PRK05387         55 RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPV----YAGLYGIPYEEIPL  130 (353)
T ss_pred             hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHH----HHHHcCCEEEEeec
Confidence            456666678999999999985 334555554 599999999999999999999999965442    34556777766643


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc-CCEEEEecCCCCCCccccc----cCCCcEEE
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKAL----SLGADLVL  352 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~-g~~lVVD~tfa~~~~~~pl----~~GaDiVv  352 (451)
                           .|++++++     ++++|++++|+||||.+.+.+++.++++.+ |+++|+|++|.........    .....+++
T Consensus       131 ~~~~~~d~~~l~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~  205 (353)
T PRK05387        131 DDDFSIDVEDYLR-----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVV  205 (353)
T ss_pred             CCCCCCCHHHHHh-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEE
Confidence                 35666652     257899999999999999999999999875 9999999998543211111    12346999


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhC-CCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G-~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .|+||.++.+| ++.|+++++++++++++..+...+ ..++....+.+...+   +.+....++..++...+.+.|+++
T Consensus       206 ~S~SK~~~~~G-lR~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (353)
T PRK05387        206 QTFSKSRSLAG-LRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL  283 (353)
T ss_pred             EehhHhhcchh-hhceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999998666 578999999999999887764432 234555544444443   234444566667788888899877

>PRK07777 aminotransferase; Validated

Probab=99.84  E-value=8.9e-19  Score=180.63  Aligned_cols=210  Identities=15%  Similarity=0.179  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhh----hCC----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSAL----EGA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l----~ga----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ..+|++.++++    +|.    + +.+++++|++|+.+++.+++++||+|+++.|.|......    +...|.++..++.
T Consensus        63 ~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~----~~~~g~~~~~~~~  138 (387)
T PRK07777         63 IPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAV----IAMAGAHRVPVPL  138 (387)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHH----HHHCCCEEEEeec
Confidence            55677777764    453    2 355556667999999999999999999999999875533    3344655544421


Q ss_pred             --------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc---
Q 013019          283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL---  344 (451)
Q Consensus       283 --------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl---  344 (451)
                              .|+++|+++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    .++   
T Consensus       139 ~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~  217 (387)
T PRK07777        139 VPDGRGFALDLDALRAAVTPR-TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATL  217 (387)
T ss_pred             CCccCCCcCCHHHHHHhcCcc-cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhC
Confidence                    4789999988764 899999999999999874   888999999999999999998642210    111   


Q ss_pred             --cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHH----hhHHHHHHHHHHHHHHH
Q 013019          345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR----GMKTLHLRVQQQNSTAL  418 (451)
Q Consensus       345 --~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lr----gL~tl~~Rl~~~~~nA~  418 (451)
                        ..+.++++.|+||.++.+| ++.|+++++++++++++..........+......+..    ..+.+....+...++..
T Consensus       218 ~~~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~  296 (387)
T PRK07777        218 PGMRERTVTISSAAKTFNVTG-WKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRD  296 (387)
T ss_pred             CCCcCcEEEEeechhhccCcC-ceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence              1246799999999998776 6789999999999888876654332222222222222    22333333456667788


Q ss_pred             HHHHHHHcC
Q 013019          419 RMAEILEAH  427 (451)
Q Consensus       419 ~Lae~L~~~  427 (451)
                      .+.+.|+++
T Consensus       297 ~l~~~L~~~  305 (387)
T PRK07777        297 RLAAGLAEA  305 (387)
T ss_pred             HHHHHHHhC
Confidence            888888775

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.84  E-value=3.3e-19  Score=183.87  Aligned_cols=168  Identities=20%  Similarity=0.252  Sum_probs=133.8

Q ss_pred             hhHHHHHHHHHhhhCCC-cEEEe-CCHHHHHHHHHHHH---ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          210 PTTVVVEEKMSALEGAE-STVIM-ASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae-~~vv~-sSG~aAi~~al~al---l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      +..+++++.+++++|.+ ..+++ +++++++..++.++   +++||+|++.++.|.+.+..+...++..|+++.+++.  
T Consensus        60 ~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~  139 (397)
T TIGR01976        60 QVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDE  139 (397)
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccc
Confidence            34678999999999963 33555 45557777666554   6899999999999988776665556778988887653  


Q ss_pred             ----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcc
Q 013019          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATK  357 (451)
Q Consensus       283 ----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK  357 (451)
                          .|+++++++++++ +++|++++|+||+|.+.|+++|.++|+++|+++++|+++..+. ..+..++|+|+++.|++|
T Consensus       140 ~~~~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K  218 (397)
T TIGR01976       140 ATGELHPDDLASLLSPR-TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYK  218 (397)
T ss_pred             cCCCcCHHHHHHhcCCC-ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechh
Confidence                2689999999874 9999999999999999999999999999999999999975432 223335789999999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRN  382 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~  382 (451)
                      +++ ++   +|++++++++++++..
T Consensus       219 ~~g-~~---~G~l~~~~~~~~~l~~  239 (397)
T TIGR01976       219 FFG-PH---MGILWGRPELLMNLPP  239 (397)
T ss_pred             hcC-Cc---eEEEEEcHHHHhhCCC
Confidence            985 33   7899999888877654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK09148 aminotransferase; Validated

Probab=99.84  E-value=3.9e-19  Score=184.94  Aligned_cols=217  Identities=15%  Similarity=0.147  Sum_probs=150.1

Q ss_pred             cCCCch-hHHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          205 GRYGNP-TTVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       205 ~R~~np-t~~~Lee~LA~l~----ga----e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      .+|+.+ ....|++++++++    |.    ++.|++++|+ +++..++.+++.+||+|++++|.|......    +...|
T Consensus        62 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~----~~~~g  137 (405)
T PRK09148         62 HRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFG----FIMAG  137 (405)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHH----HHhcC
Confidence            444443 2456777777765    42    3245556555 999999999999999999999999986533    34568


Q ss_pred             cEEEEeCCC----CHHHHHHhhc---CCCeEEEEEeCCCCCccccccH---HHHHHHHHhcCCEEEEecCCCCCCcc---
Q 013019          275 ITATVIDPA----DMEGLEAALN---NNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ---  341 (451)
Q Consensus       275 i~v~~vd~~----D~d~Le~ai~---~~~tklV~lesPsNPtG~v~DL---~~IaelA~~~g~~lVVD~tfa~~~~~---  341 (451)
                      +++..++..    ++++++++++   + ++++|++++|+||||.+.+.   ++|.++|+++|++||+|++|......   
T Consensus       138 ~~v~~v~~~~~~~~~~~l~~~~~~~~~-~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  216 (405)
T PRK09148        138 GVIRSVPAEPDEEFFPALERAVRHSIP-KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNP  216 (405)
T ss_pred             CEEEEEeCCCCCCCccCHHHHHhhccc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCC
Confidence            877666432    2344444443   3 48999999999999999985   67888999999999999998643211   


Q ss_pred             -c-cccC----CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHH
Q 013019          342 -K-ALSL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQ  411 (451)
Q Consensus       342 -~-pl~~----GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~  411 (451)
                       . ...+    +..+++.|+||.++.+| ++.||++++++++++++..+.....+.+......+...|+    .+....+
T Consensus       217 ~~s~~~~~~~~~~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~  295 (405)
T PRK09148        217 PPSVLQVPGAKDVTVEFTSMSKTFSMAG-WRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRE  295 (405)
T ss_pred             CCChhhCCCccCcEEEEeccccccCCcc-hheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHH
Confidence             1 1111    23467899999998777 6899999999999999887765544444444333333332    2333345


Q ss_pred             HHHHHHHHHHHHHHcC
Q 013019          412 QQNSTALRMAEILEAH  427 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~  427 (451)
                      +..++...+.+.|+++
T Consensus       296 ~~~~~r~~l~~~L~~~  311 (405)
T PRK09148        296 LYKKRRDVLVESFGRA  311 (405)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            5667777788888775

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.84  E-value=1.3e-18  Score=179.25  Aligned_cols=210  Identities=13%  Similarity=0.088  Sum_probs=165.9

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      .+.++++|+.+++++|.+++++++||++|+.+++.++ +++||+|+++.++|.++...    +...|+++.++|.     
T Consensus        30 ~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~----~~~~G~~~v~~d~d~~~~  105 (375)
T PRK11706         30 GGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANA----FVLRGAKIVFVDIRPDTM  105 (375)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCCcC
Confidence            4678999999999999999999999999998887766 78999999999999987643    3456888888763     


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC--ccccccCCCcEEEECCc--c
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVLHSAT--K  357 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~--~~~pl~~GaDiVv~S~S--K  357 (451)
                       .|+++++++++++ +++|++   +|++|...|+++|.++|+++|++||+|++++.+.  ..++.....|+.+.|++  |
T Consensus       106 ~~d~~~le~~i~~~-tk~i~~---~~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K  181 (375)
T PRK11706        106 NIDETLIEAAITPK-TRAIVP---VHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETK  181 (375)
T ss_pred             CcCHHHHHHhcCCC-CeEEEE---eCCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCc
Confidence             4789999999874 999986   4678999999999999999999999999986543  33444333588898877  9


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHhHh-------------------hCC--CccHHHHHHHHHhhHHHHHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLHHV-------------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQNST  416 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~~~-------------------~G~--~ls~~~a~l~lrgL~tl~~Rl~~~~~n  416 (451)
                      .++...  .|++++.++++.++++.++..                   +|.  .++...+.+++..++.++...++..++
T Consensus       182 ~l~~g~--gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~  259 (375)
T PRK11706        182 NYTAGE--GGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLAL  259 (375)
T ss_pred             cccccC--CeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            997532  244555567888877766531                   122  245666777778888898888888999


Q ss_pred             HHHHHHHHHcCC
Q 013019          417 ALRMAEILEAHP  428 (451)
Q Consensus       417 A~~Lae~L~~~p  428 (451)
                      ++.+.+.|.+.+
T Consensus       260 ~~~~~~~L~~~~  271 (375)
T PRK11706        260 WQRYYDALAPLA  271 (375)
T ss_pred             HHHHHHHhcCCC
Confidence            999999998876

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.84  E-value=1.1e-18  Score=181.30  Aligned_cols=213  Identities=15%  Similarity=0.186  Sum_probs=151.9

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          212 TVVVEEKMSALEGA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       212 ~~~Lee~LA~l~ga---e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      ++.+.+.+++..|.   .+.+++++| ++|+..++.+++++||+|++++|+|......+    ...+..+..++.     
T Consensus        76 r~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~----~~~~~~~~~v~~~~~~~  151 (402)
T PRK06107         76 RKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMV----LANDGTPVIVACPEEQG  151 (402)
T ss_pred             HHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHH----HHcCCEEEEecCCcccC
Confidence            45555666655554   234556655 59999999999999999999999988765433    222333333321     


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhc-CCEEEEecCCCCCCcc----cc-cc-----C
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK-GAIVCIDGTFATPLNQ----KA-LS-----L  346 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~-g~~lVVD~tfa~~~~~----~p-l~-----~  346 (451)
                        .|++++++++++ ++++|++++|+||||.+.+   +++|+++|+++ |+++|+|++|......    .. ..     .
T Consensus       152 ~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~  230 (402)
T PRK06107        152 FKLTPEALEAAITP-RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELR  230 (402)
T ss_pred             CCCCHHHHHhhcCc-CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCcc
Confidence              367899998876 4899999999999999985   67788889998 9999999998642111    01 11     1


Q ss_pred             CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHH
Q 013019          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAE  422 (451)
Q Consensus       347 GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA~~Lae  422 (451)
                      +..+++.|+||.++.+| .+.||++++++++++++......+...+...++++...|    +.+....+...++.+.+.+
T Consensus       231 ~~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  309 (402)
T PRK06107        231 DRVLVTNGVSKTYAMTG-WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALA  309 (402)
T ss_pred             CCEEEEeccchhhcCcc-cceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            23588899999997676 678999999999999988877666566666655555444    2344445566777888889


Q ss_pred             HHHcCCCe
Q 013019          423 ILEAHPKV  430 (451)
Q Consensus       423 ~L~~~p~V  430 (451)
                      .|++++++
T Consensus       310 ~L~~~~g~  317 (402)
T PRK06107        310 LLNAIPGL  317 (402)
T ss_pred             HHhcCCCC
Confidence            99887553

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.84  E-value=3.3e-19  Score=184.83  Aligned_cols=211  Identities=23%  Similarity=0.249  Sum_probs=157.7

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d  286 (451)
                      ++...+||++|++++|.+.+++++||++|+..++..+..  +|+.|+.....|+.+..    .+...|+++..++..|++
T Consensus        89 ~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~----~~~~~g~~~~~~~~~d~~  164 (402)
T TIGR01821        89 NIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIE----GIRHSGAEKFIFRHNDVA  164 (402)
T ss_pred             cHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHH----HHHHcCCeEEEECCCCHH
Confidence            577899999999999999999999999999999887765  67777766555554432    234457776666667888


Q ss_pred             HHHHhhc---CCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---------cccCCCcEEEEC
Q 013019          287 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS  354 (451)
Q Consensus       287 ~Le~ai~---~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---------pl~~GaDiVv~S  354 (451)
                      ++++.++   ++++++|++|+|+||+|.+.|+++|.++|+++|+++|+|++++.+....         .+....|+++.+
T Consensus       165 ~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t  244 (402)
T TIGR01821       165 HLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGT  244 (402)
T ss_pred             HHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEe
Confidence            8888775   2248999999999999999999999999999999999999976432211         011235899999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++|.+++.    ||++++++++++.++.....  +....++..+..++..|+.+   ..+.+++.+++..+.+.|+++
T Consensus       245 ~sKa~g~~----GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (402)
T TIGR01821       245 LAKAFGVV----GGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL  318 (402)
T ss_pred             chhhhccC----CceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999875    58999999998888764432  23345666665555555543   333455567888888888875

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.84  E-value=2.1e-19  Score=184.58  Aligned_cols=216  Identities=18%  Similarity=0.226  Sum_probs=155.7

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ..+|+++....|++.|++++|. .+.+++++|+ +++..++.+++++||+|++..|.|+...    ..++..|+++..++
T Consensus        65 ~~~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~----~~~~~~g~~~~~v~  140 (371)
T PRK05166         65 LRLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHE----DYPTMMGARVERVT  140 (371)
T ss_pred             hhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHH----HHHHHcCCeEEEee
Confidence            3456666666899999999986 3456666666 8999898999999999999999998654    33456788877765


Q ss_pred             C-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh--cCCEEEEecCCCCCCcc----cc---cc-C
Q 013019          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KA---LS-L  346 (451)
Q Consensus       282 ~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~----~p---l~-~  346 (451)
                      .     .|+++++++++++ +++|++++|+||||.+++.+++.++++.  .++++|+|++|......    ..   +. .
T Consensus       141 ~~~~~~~~~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  219 (371)
T PRK05166        141 VTPDLGFDLDALCAAVARA-PRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKAR  219 (371)
T ss_pred             cCCCCCCCHHHHHHhhhcC-CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhc
Confidence            3     3689999988774 8999999999999999998777777664  47899999998643211    11   11 1


Q ss_pred             -CCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q 013019          347 -GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       347 -GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~La  421 (451)
                       ...+++.|+||.++.+| ++.||++. ++++++.++..+..++  .+......+...+   +.+...++...++.+.+.
T Consensus       220 ~~~vi~i~SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~  296 (371)
T PRK05166        220 GLPWIVLRTFSKAYGLAG-LRVGYGLVSDPELVGLLDRVRTPFN--VNGAAQAAALAALDDEEHLAKGVALALAERERLK  296 (371)
T ss_pred             CCCEEEEeechHhhhcch-hheeeeecCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence             13488999999998776 57888664 7788888876654333  3444433333222   344444556667777888


Q ss_pred             HHHHcC
Q 013019          422 EILEAH  427 (451)
Q Consensus       422 e~L~~~  427 (451)
                      +.|+++
T Consensus       297 ~~L~~~  302 (371)
T PRK05166        297 KELAEM  302 (371)
T ss_pred             HHHHHC
Confidence            999887

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.84  E-value=2.6e-19  Score=183.10  Aligned_cols=204  Identities=18%  Similarity=0.215  Sum_probs=144.7

Q ss_pred             HHHHHHHHhhh----C---C-CcEEEeCCHH-HHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          213 VVVEEKMSALE----G---A-ESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       213 ~~Lee~LA~l~----g---a-e~~vv~sSG~-aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+|++.+++++    |   . ++.+++++|+ +++..++..+ +++||+|++++|.|.....    .+...|+++..++ 
T Consensus        65 ~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~----~~~~~g~~~~~~~-  139 (364)
T PRK07865         65 PELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEV----GARLAGATVVRAD-  139 (364)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHH----HHHhcCCEEEecC-
Confidence            45666666654    4   2 3456667666 8888877777 7999999999999987553    3345688877664 


Q ss_pred             CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc-c---c-------cCCC
Q 013019          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-A---L-------SLGA  348 (451)
Q Consensus       283 ~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~-p---l-------~~Ga  348 (451)
                       ++++++.   + ++++|++++|+||||.+++   +++|.++|+++|++||+|++|....... +   +       ....
T Consensus       140 -~~~~l~~---~-~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~  214 (364)
T PRK07865        140 -SLTELGP---Q-RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTG  214 (364)
T ss_pred             -ChhhCCc---c-cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccce
Confidence             3444332   3 5899999999999999986   5788888999999999999987432111 1   1       1123


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L~  425 (451)
                      .+++.|+||.++.+| .++||++++++++++++..+...+...+......+...++   .+....+...++...+.+.|+
T Consensus       215 ~i~~~S~SK~~~~~G-lRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~  293 (364)
T PRK07865        215 LLAVHSLSKQSNLAG-YRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALE  293 (364)
T ss_pred             EEEEeechhccCCCc-eeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999998666 6789999999999999887766665566665554444443   233334555667777888887


Q ss_pred             cC
Q 013019          426 AH  427 (451)
Q Consensus       426 ~~  427 (451)
                      ++
T Consensus       294 ~~  295 (364)
T PRK07865        294 AA  295 (364)
T ss_pred             Hc
Confidence            75

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.84  E-value=7.3e-19  Score=179.68  Aligned_cols=213  Identities=21%  Similarity=0.198  Sum_probs=161.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHH
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d  286 (451)
                      +..+..++++++++++++.++.+++++|++++..++..++++||+|+++++.|+.+...    +...|.++..++..|++
T Consensus        81 g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~  156 (385)
T PRK05958         81 GNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDG----ARLSRARVRRYPHNDVD  156 (385)
T ss_pred             CCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHH----HHhcCCceEEeCCCCHH
Confidence            34677889999999999988899999999888888888899999999999999876543    34457787778778899


Q ss_pred             HHHHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc---c------ccc-CCCcEEEEC
Q 013019          287 GLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---K------ALS-LGADLVLHS  354 (451)
Q Consensus       287 ~Le~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~---~------pl~-~GaDiVv~S  354 (451)
                      ++++.+++.  ++++++++++.|++|...++++|.++|+++|+++|+|++++.+...   .      .+. ...++++.|
T Consensus       157 ~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s  236 (385)
T PRK05958        157 ALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGT  236 (385)
T ss_pred             HHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEe
Confidence            999988652  3678888899999999999999999999999999999998654221   0      111 123488999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++|++++.    ||+++++++++++++.....  .+...++..+..+...++.+   ....++..++.+.+.+.|++.
T Consensus       237 ~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T PRK05958        237 LGKALGSS----GAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL  310 (385)
T ss_pred             chhhcccC----CcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999764    48888998888877644321  22334555544444444433   344566677788888888865

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.83  E-value=3.8e-19  Score=181.71  Aligned_cols=211  Identities=18%  Similarity=0.209  Sum_probs=144.5

Q ss_pred             CCCchh-HHHHHHHHHhhh----C---C-CcEEEeCCHH-HHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          206 RYGNPT-TVVVEEKMSALE----G---A-ESTVIMASGM-SASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~----g---a-e~~vv~sSG~-aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      +|+++. ...|++.+++++    |   . .+.+++++|+ +++..++..+ +++||+|++++|+|......    +...|
T Consensus        51 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~----~~~~g  126 (357)
T TIGR03539        51 GYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVG----ALLAG  126 (357)
T ss_pred             CCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHH----HHhcC
Confidence            444443 345666666654    3   2 2456666655 8888888877 79999999999999865432    34567


Q ss_pred             cEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-ccc---cc--
Q 013019          275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-QKA---LS--  345 (451)
Q Consensus       275 i~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-~~p---l~--  345 (451)
                      .++..++  +++.+    ++.++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|..... ..+   +.  
T Consensus       127 ~~~~~v~--~~~~l----~~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~  200 (357)
T TIGR03539       127 ATPVAAD--DPTEL----DPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPR  200 (357)
T ss_pred             CEEeccC--Chhhc----CccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecc
Confidence            7776654  44433    2235899999999999999986   66788999999999999999864211 111   11  


Q ss_pred             -----CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHH
Q 013019          346 -----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTA  417 (451)
Q Consensus       346 -----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA  417 (451)
                           ..-.+++.|+||.++.+| .++||++++++++++++..+...+...+......+...|+.   +....+...++.
T Consensus       201 ~~~~~~~~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  279 (357)
T TIGR03539       201 VCGGDHTGLLAVHSLSKRSNLAG-YRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARR  279 (357)
T ss_pred             cCCCccccEEEEeccccccCCCc-eeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                 112488999999987666 67899999999999988777665555555555544444422   222334445666


Q ss_pred             HHHHHHHHcC
Q 013019          418 LRMAEILEAH  427 (451)
Q Consensus       418 ~~Lae~L~~~  427 (451)
                      ..+.+.|.++
T Consensus       280 ~~~~~~L~~~  289 (357)
T TIGR03539       280 AQLKPALEKA  289 (357)
T ss_pred             HHHHHHHHHc
Confidence            7777888775

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.83  E-value=2.4e-19  Score=178.78  Aligned_cols=213  Identities=16%  Similarity=0.173  Sum_probs=149.0

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC---
Q 013019          206 RYGNPTTVVVEEKMSALEGAESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---  281 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~gae~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd---  281 (451)
                      .++.....++|+.+|+++|+++++++++| ++++..++.+++++||+|++++++|.+....+    ...|+++.+++   
T Consensus        55 ~~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~----~~~g~~~~~v~~~~  130 (294)
T cd00615          55 LDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGL----VLSGAVPVYLKPER  130 (294)
T ss_pred             CCCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHH----HHCCCEEEEecCcc
Confidence            34556678999999999999888875555 58999999999999999999999998866443    34577766653   


Q ss_pred             --------CCCHHHHHHhhcC-CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC------ccccccC
Q 013019          282 --------PADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------NQKALSL  346 (451)
Q Consensus       282 --------~~D~d~Le~ai~~-~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~------~~~pl~~  346 (451)
                              ..|++++++++++ .++++|++++| |++|.+.|+++|.++|+++|+++++|++++..+      .......
T Consensus       131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~  209 (294)
T cd00615         131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA  209 (294)
T ss_pred             CcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhc
Confidence                    2478999999964 25899999998 699999999999999999999999999986521      2233456


Q ss_pred             CCcEEEECCcccCCccccceeEEEEeCHHH--HHHHHHHhHhhCCC-ccHHHHHHHHHhhHH----HHHHHHHHHHHHHH
Q 013019          347 GADLVLHSATKFIGGHNDVLAGSISGSGKL--VTQIRNLHHVLGGA-LNPNAAYLIIRGMKT----LHLRVQQQNSTALR  419 (451)
Q Consensus       347 GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el--i~~lr~~~~~~G~~-ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~  419 (451)
                      |+|+++.|++|+++|..  .+|++..+.+.  .++++.....+... ++......+..+++.    -..++++..++++.
T Consensus       210 ~~div~~S~hK~l~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~  287 (294)
T cd00615         210 GADIVVQSTHKTLPALT--QGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALY  287 (294)
T ss_pred             CCcEEEEchhcccchHh--HHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            89999999999998764  35666554432  23444433333222 221111111112221    23345666666666


Q ss_pred             HHHHHH
Q 013019          420 MAEILE  425 (451)
Q Consensus       420 Lae~L~  425 (451)
                      +.++|.
T Consensus       288 ~r~~l~  293 (294)
T cd00615         288 ARQEIN  293 (294)
T ss_pred             HHHHHh
Confidence            666654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.83  E-value=7.4e-19  Score=179.61  Aligned_cols=204  Identities=22%  Similarity=0.275  Sum_probs=151.7

Q ss_pred             chhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcC---CCCcchHHHHHHhhhcCCcEEEEeCCC
Q 013019          209 NPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTT---DCYRKTRIFIETVLPKMGITATVIDPA  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~---~~Y~~t~~~l~~~l~~~Gi~v~~vd~~  283 (451)
                      .+..++||+++|+++|.  ++++++++|.+|+..++.+++++||+|+++.   +.|....    ..++..|.++  +...
T Consensus        53 ~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~----~~~~l~ga~~--~~~~  126 (346)
T TIGR03576        53 AIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIP----RSCKLAGAEY--FESD  126 (346)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHH----HHHHHcCCEE--eccC
Confidence            36688999999999998  8899999999999999999999999999753   4555433    3345556664  3334


Q ss_pred             CHHHHHHhhcCCCeEEEEEeCCCCCcccc---ccHHHHHHHHHhcCCEEEEecCCCCCCc----cc-cccCCCcEEEECC
Q 013019          284 DMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN----QK-ALSLGADLVLHSA  355 (451)
Q Consensus       284 D~d~Le~ai~~~~tklV~lesPsNPtG~v---~DL~~IaelA~~~g~~lVVD~tfa~~~~----~~-pl~~GaDiVv~S~  355 (451)
                      ++++++. . + ++++|++ +++|++|.+   .||++|+++|+++|++|++||+|+.++.    .. ....|.|+++.|+
T Consensus       127 ~l~~l~~-~-~-~~~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~  202 (346)
T TIGR03576       127 ELSELKK-I-D-GTSLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTST  202 (346)
T ss_pred             CHHHHhh-C-c-CceEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEecc
Confidence            5666543 2 3 3788888 467899998   5899999999999999999999987531    11 2345789999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHH
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILE  425 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~nA~~Lae~L~  425 (451)
                      ||.++|.   ++|++++++++++.++.....++.++++..++.++.+|+.+.  .+.+...++...+.+.|.
T Consensus       203 SKalaG~---r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~  271 (346)
T TIGR03576       203 DKLMDGP---RGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFD  271 (346)
T ss_pred             chhcccc---ceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            9988776   489999999999999988776665566667777777776532  223344445555555555

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.83  E-value=3.5e-19  Score=181.92  Aligned_cols=216  Identities=17%  Similarity=0.190  Sum_probs=150.1

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC
Q 013019          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~  283 (451)
                      +|+.+....|++.++++++. ++.+++++|+ +++..++.++ .+|+ +++..|.|....    ..++..|+++..++..
T Consensus        51 ~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~----~~~~~~g~~~~~v~~~  124 (356)
T PRK08056         51 RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYR----RALQQVGCEIRRYSLR  124 (356)
T ss_pred             cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHH----HHHHHcCCeEEEEecc
Confidence            45656678999999999986 3455566665 8888888775 6776 677788887644    3445668877766431


Q ss_pred             -----CH-HHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc-----cc-cCCC
Q 013019          284 -----DM-EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL-SLGA  348 (451)
Q Consensus       284 -----D~-d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~-----pl-~~Ga  348 (451)
                           ++ +++++++.+ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.......     .+ ....
T Consensus       125 ~~~~~~~~~~~~~~~~~-~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  203 (356)
T PRK08056        125 EADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPH  203 (356)
T ss_pred             cccCCCccHHHHHhccC-CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCC
Confidence                 22 355566665 4899999999999999998   7889999999999999999986543211     11 1245


Q ss_pred             cEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      ++++.|+||+++.+| .+.||+++ +++++++++.....+  ..+.+.+..+...+   ..+....++..++.+.+.+.|
T Consensus       204 ~i~~~S~SK~~~~~G-~RiG~~v~~~~~~~~~l~~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L  280 (356)
T PRK08056        204 LWVLRSLTKFYAIPG-LRLGYLVNSDDAAVARMRRQQMPW--SINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQAL  280 (356)
T ss_pred             EEEEEechhhccCcc-hhheeeecCCHHHHHHHHHhCCCC--chhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999777 57888887 567777777544322  33444444433333   223333455667788888999


Q ss_pred             HcCCCeE
Q 013019          425 EAHPKVL  431 (451)
Q Consensus       425 ~~~p~V~  431 (451)
                      ++.+++.
T Consensus       281 ~~~~~~~  287 (356)
T PRK08056        281 CALPLLT  287 (356)
T ss_pred             hcCCCcE
Confidence            8887653

>PRK08363 alanine aminotransferase; Validated

Probab=99.83  E-value=2.3e-18  Score=178.35  Aligned_cols=217  Identities=15%  Similarity=0.142  Sum_probs=151.5

Q ss_pred             chhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          209 NPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       209 npt~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      .+....|+++++++++        .++.++++++++|+..++.+++++||+|++++|+|......+    ...|..+..+
T Consensus        69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~v~~  144 (398)
T PRK08363         69 SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLV----KFYGGVPVEY  144 (398)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCEEEEe
Confidence            4556778888888763        134455555569999999999999999999999999876433    3455544433


Q ss_pred             -C------CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---c---c
Q 013019          281 -D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A---L  344 (451)
Q Consensus       281 -d------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---p---l  344 (451)
                       +      ..|+++++++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.......   +   +
T Consensus       145 ~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~  223 (398)
T PRK08363        145 RTIEEEGWQPDIDDIRKKITEK-TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSL  223 (398)
T ss_pred             ccccccCCcCCHHHHHhhCCcc-eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHc
Confidence             1      13688899988764 899999999999999987   8889999999999999999986432111   1   1


Q ss_pred             c-CCCcEEEECCcccCCccccceeEEEEe--CHHHHHHHHHHhHhh---CCCccHHHHHHHHHhh----HHHHHHHHHHH
Q 013019          345 S-LGADLVLHSATKFIGGHNDVLAGSISG--SGKLVTQIRNLHHVL---GGALNPNAAYLIIRGM----KTLHLRVQQQN  414 (451)
Q Consensus       345 ~-~GaDiVv~S~SK~l~G~gdv~gG~Iv~--~~eli~~lr~~~~~~---G~~ls~~~a~l~lrgL----~tl~~Rl~~~~  414 (451)
                      . ....+++.|+||.++.+| ++.||+++  ++++++.++.....+   ....+.....++...|    +.+....++..
T Consensus       224 ~~~~~vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~  302 (398)
T PRK08363        224 TKDVPVIVMNGLSKVYFATG-WRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLK  302 (398)
T ss_pred             CcCCcEEEEecchhccCCcc-ceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            1 112477899999988776 67888886  677777766543221   1223444433333322    34444456667


Q ss_pred             HHHHHHHHHHHcCCCeE
Q 013019          415 STALRMAEILEAHPKVL  431 (451)
Q Consensus       415 ~nA~~Lae~L~~~p~V~  431 (451)
                      ++...+.+.|+++|++.
T Consensus       303 ~~~~~l~~~L~~~~~~~  319 (398)
T PRK08363        303 ERRDYIYKRLNEIPGIS  319 (398)
T ss_pred             HHHHHHHHHHhcCCCCE
Confidence            77888889998887653

>PLN02651 cysteine desulfurase

Probab=99.83  E-value=3.4e-19  Score=182.41  Aligned_cols=222  Identities=17%  Similarity=0.167  Sum_probs=155.3

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH----ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~al----l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ....++++++|++++|.+  ..+++++|++++..++.++    .++||+|++.+..|+++...+.. +...|++++.++.
T Consensus        42 ~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~-~~~~g~~v~~v~~  120 (364)
T PLN02651         42 EDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRH-LQQEGFEVTYLPV  120 (364)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHH-HHhcCCEEEEEcc
Confidence            345678899999999973  3455556668877776554    47899999999999886655533 3467888887754


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~S  356 (451)
                           .|+++++++++++ +++|++++++|+||.+.|+++|.++||++|+++++|++++.+ ...+..++|+|+++.|.+
T Consensus       121 ~~~~~~d~~~l~~~i~~~-t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~h  199 (364)
T PLN02651        121 KSDGLVDLDELAAAIRPD-TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGH  199 (364)
T ss_pred             CCCCcCCHHHHHHhcCCC-cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechh
Confidence                 3789999999875 999999999999999999999999999999999999998765 334555689999999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHHhH-------hhCCCccHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKTLHL----RVQQQNSTALRMAEILE  425 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~~~-------~~G~~ls~~~a~l~lrgL~tl~~----Rl~~~~~nA~~Lae~L~  425 (451)
                      |+++++|   .|+++.+++...++.....       ...++.+....+.+..+++.+..    ..++..+..+++.+.|+
T Consensus       200 K~~gp~G---~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~  276 (364)
T PLN02651        200 KIYGPKG---VGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLR  276 (364)
T ss_pred             hhCCCCc---eEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            9865554   6787777765544332211       11223333333333344443322    23344455666667776


Q ss_pred             c-CCCeEEEecC
Q 013019          426 A-HPKVLLLFIT  436 (451)
Q Consensus       426 ~-~p~V~~V~yP  436 (451)
                      + .|+++ ++.|
T Consensus       277 ~~~~~~~-i~~~  287 (364)
T PLN02651        277 AKLGGVR-VNGP  287 (364)
T ss_pred             hhCCCEE-EECC
Confidence            5 56763 3444

>PRK09265 aminotransferase AlaT; Validated

Probab=99.83  E-value=1.3e-18  Score=180.77  Aligned_cols=218  Identities=14%  Similarity=0.166  Sum_probs=144.3

Q ss_pred             CCCchh-HHHHHHHHHhhh------CC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          206 RYGNPT-TVVVEEKMSALE------GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~------ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      +|+.+. ...|++.+++++      +. .+.+++++|+ +++..++.+++++||+|++++|+|......+    ...|..
T Consensus        67 ~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~  142 (404)
T PRK09265         67 GYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAV----SLSGGK  142 (404)
T ss_pred             CCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHH----HHcCCE
Confidence            344444 467888888876      32 3456666666 7888999999999999999999999755433    334555


Q ss_pred             EEEe--CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----c
Q 013019          277 ATVI--DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K  342 (451)
Q Consensus       277 v~~v--d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~  342 (451)
                      +..+  +.     .|+++++++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    .
T Consensus       143 ~v~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~  221 (404)
T PRK09265        143 PVHYLCDEEAGWFPDLDDIRSKITPR-TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHI  221 (404)
T ss_pred             EEEEecccccCCCCCHHHHHHhcccc-ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcC
Confidence            4433  21     3688999988764 999999999999999998   888999999999999999998643211    1


Q ss_pred             c-ccC--C-CcEEEECCcccCCccccceeEEEEe--CHHH----HHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHH-
Q 013019          343 A-LSL--G-ADLVLHSATKFIGGHNDVLAGSISG--SGKL----VTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHL-  408 (451)
Q Consensus       343 p-l~~--G-aDiVv~S~SK~l~G~gdv~gG~Iv~--~~el----i~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~-  408 (451)
                      + ..+  . .-+++.|+||.++.+| ++.||++.  ++++    ++.++... ......+.....++...|.   .+.. 
T Consensus       222 ~~~~~~~~~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~  299 (404)
T PRK09265        222 SIASLAPDLLCVTFNGLSKAYRVAG-FRVGWMVLSGPKKHAKGYIEGLDMLA-SMRLCANVPAQHAIQTALGGYQSINEL  299 (404)
T ss_pred             CHHHcCCCceEEEEecchhhccCcc-cceEEEEEeCchHHHHHHHHHHHHHh-ccccCCCcHHHHHHHHHhcCchhHHHH
Confidence            1 111  1 2367899999998777 56788874  4443    33333221 1222334444443333332   1211 


Q ss_pred             --HHHHHHHHHHHHHHHHHcCCCe
Q 013019          409 --RVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       409 --Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                        ..++..++...+.+.|++++++
T Consensus       300 ~~~~~~~~~~r~~~~~~L~~~~~~  323 (404)
T PRK09265        300 ILPGGRLYEQRDRAWELLNAIPGV  323 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCC
Confidence              1234556677788888877664

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.83  E-value=3e-19  Score=173.54  Aligned_cols=252  Identities=18%  Similarity=0.260  Sum_probs=192.6

Q ss_pred             cccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-CCCeEEEcC
Q 013019          178 VNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTTT  256 (451)
Q Consensus       178 ~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~-~GD~VIv~~  256 (451)
                      .+|+|+..|+.++...+.+...++..|+  .+|+...||+.+|++.|.|.+++++||+..+.++++.-+. +|.+||+.+
T Consensus        26 LRSDTvT~PTdeMr~am~eA~vgDdVyG--eD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~eii~gd  103 (384)
T KOG1368|consen   26 LRSDTVTVPTDEMRRAMAEASVGDDVYG--EDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEIIVGD  103 (384)
T ss_pred             cccccccCChHHHHHHHhhcccCccccc--CCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceEEecc
Confidence            6788898888777777777777788898  6799999999999999999999999999998888887665 899999998


Q ss_pred             CCCcchHHHHHHhhhcCCcEEEEeC-----CCCHHHHHHhhcCC-------CeEEEEEeCCCCCcc-ccccH---HHHHH
Q 013019          257 DCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNN-------NVSLFFTESPTNPFL-RCVDV---KLVSD  320 (451)
Q Consensus       257 ~~Y~~t~~~l~~~l~~~Gi~v~~vd-----~~D~d~Le~ai~~~-------~tklV~lesPsNPtG-~v~DL---~~Iae  320 (451)
                      .+|--.++.- .+...-|+.++.+.     ..++++||+++..+       .|++|.+|+.+|.+| ++.+|   ++|.+
T Consensus       104 ~~HI~~~E~g-g~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~  182 (384)
T KOG1368|consen  104 RAHIHRYEQG-GISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA  182 (384)
T ss_pred             chheeehhcc-ChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHH
Confidence            8775444321 11222355555543     24799999999732       489999999999887 88876   46788


Q ss_pred             HHHhcCCEEEEecC--C----CCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCcc--
Q 013019          321 LCHKKGAIVCIDGT--F----ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN--  392 (451)
Q Consensus       321 lA~~~g~~lVVD~t--f----a~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls--  392 (451)
                      +|++||+.|++|.+  |    +.++..+-+-.-+|-|-.-+||.++.+   .|.+++++++++++.+.++..+|+.+-  
T Consensus       183 lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP---VGSViVG~k~FI~kA~~~RKalGGGmRQs  259 (384)
T KOG1368|consen  183 LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP---VGSVIVGSKDFIDKARHFRKALGGGMRQS  259 (384)
T ss_pred             HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC---cccEEEccHHHHHHHHHHHHHhcCchhHH
Confidence            89999999999998  2    233333323334687888899999988   478899999999999999999988763  


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Q 013019          393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       393 ~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yP  436 (451)
                      ..-|..++-.|......++.-.+.|..||++++..+.+ +|.-|
T Consensus       260 GvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i-~v~v~  302 (384)
T KOG1368|consen  260 GVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEI-RVEVP  302 (384)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccce-eeecc
Confidence            34455555566655556777788899999999976655 33334

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.83  E-value=9.1e-19  Score=179.16  Aligned_cols=211  Identities=22%  Similarity=0.269  Sum_probs=173.7

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~----  283 (451)
                      .|...+||++++++.|..+++.++||+.|+.++++++ +++||+||++..+|..|...+    -..|.+..++|.+    
T Consensus        33 G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i----~~~Ga~PVFvDid~~T~  108 (374)
T COG0399          33 GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAV----LLVGAKPVFVDIDPDTL  108 (374)
T ss_pred             ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHH----HHcCCeEEEEecCCccc
Confidence            5889999999999999999999999999999999966 699999999999999887433    4468888888753    


Q ss_pred             --CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCC--CcEEEECC--cc
Q 013019          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TK  357 (451)
Q Consensus       284 --D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~G--aDiVv~S~--SK  357 (451)
                        |++.||++|+++ ||+|+   |.+-.|...|+++|.++|++||++||.|.+.+.+...+.-..|  .|+.++||  +|
T Consensus       109 nid~~~ie~aIt~~-tKAIi---pVhl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K  184 (374)
T COG0399         109 NIDPDLIEAAITPR-TKAII---PVHLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATK  184 (374)
T ss_pred             CCCHHHHHHHcccC-CeEEE---EehhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCC
Confidence              899999999985 99998   4678899999999999999999999999997655322222223  58899996  68


Q ss_pred             cCCccccceeEEEEeCH-HHHHHHHHHhHh--------------hC--CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGSG-KLVTQIRNLHHV--------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  420 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~--------------~G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~L  420 (451)
                      .+....   ||++++++ ++.++++.++..              .|  ..++...|.+.+..|+.++..+++..+++..+
T Consensus       185 ~ittgE---GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y  261 (374)
T COG0399         185 NLTTGE---GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIY  261 (374)
T ss_pred             CccccC---ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887653   89998865 677777765431              12  24667778888999999999999999999999


Q ss_pred             HHHHHcCCCe
Q 013019          421 AEILEAHPKV  430 (451)
Q Consensus       421 ae~L~~~p~V  430 (451)
                      .+.|++.+.+
T Consensus       262 ~~~l~~~~~~  271 (374)
T COG0399         262 AEALKGLPGI  271 (374)
T ss_pred             HHHhhcCCCc
Confidence            9999988753

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.83  E-value=5.4e-19  Score=179.85  Aligned_cols=208  Identities=20%  Similarity=0.256  Sum_probs=148.4

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae--~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +.||+++. ..|+++|++.+|..  +.|++++|+ ++|..+ ..++++|| |+++.|+|.....    .++..|+++..+
T Consensus        48 ~~~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l-~~~~~~g~-v~v~~P~y~~y~~----~~~~~g~~~~~v  120 (339)
T PRK06959         48 WRRLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRAL-PALLPRGR-VGIAPLAYSEYAP----AFARHGHRVVPL  120 (339)
T ss_pred             HHhCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHH-HHhcCCCe-EEEcCCCcHHHHH----HHHHCCCEEEee
Confidence            46688887 89999999999973  567777777 777755 45678877 8889999987653    345668887776


Q ss_pred             CCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHH---HHhcCCEEEEecCCCCCCccccc----cCCCcEEEE
Q 013019          281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL---CHKKGAIVCIDGTFATPLNQKAL----SLGADLVLH  353 (451)
Q Consensus       281 d~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~Iael---A~~~g~~lVVD~tfa~~~~~~pl----~~GaDiVv~  353 (451)
                      +..+ +    .+.+ .++++++++|+||||.+.+.+++.++   |++++.++|+||+|.......++    ....-+++.
T Consensus       121 ~~~~-~----~~~~-~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~  194 (339)
T PRK06959        121 DEAA-D----TLPA-ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLR  194 (339)
T ss_pred             cccc-h----hccc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEe
Confidence            6533 2    2333 36799999999999999987666655   55789999999998764321211    112248899


Q ss_pred             CCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       354 S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      |+||.++.+| ++.||+++++++++++++.+..++  ++......+...|+   ......++..++.+.+.+.|+++
T Consensus       195 SfSK~~gl~G-lRiGy~v~~~~li~~l~~~~~~~~--vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  268 (339)
T PRK06959        195 SVGKFFGLAG-VRAGFVLAAPALLAALRDALGAWT--VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH  268 (339)
T ss_pred             cChhhcCCcc-hheEEEecCHHHHHHHHHhcCCCC--CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999998776 678999999999999988765544  34444443333332   23333456667788888889876

>PRK08175 aminotransferase; Validated

Probab=99.83  E-value=8.3e-19  Score=181.57  Aligned_cols=211  Identities=15%  Similarity=0.165  Sum_probs=147.1

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...|++.+++++    |.    ++.+++++|+ +++..++..++++||+|++++|.|......+    ...|+++..++.
T Consensus        69 ~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~v~~  144 (395)
T PRK08175         69 IPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGA----VIAGAQVRSVPL  144 (395)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH----HHcCCeEEEEec
Confidence            456777777654    32    3246666666 8998888899999999999999998755333    345777766643


Q ss_pred             C----CHHHHHHhhcC--CCeEEEEEeCCCCCccccccH---HHHHHHHHhcCCEEEEecCCCCCCcc----cc---cc-
Q 013019          283 A----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ----KA---LS-  345 (451)
Q Consensus       283 ~----D~d~Le~ai~~--~~tklV~lesPsNPtG~v~DL---~~IaelA~~~g~~lVVD~tfa~~~~~----~p---l~-  345 (451)
                      .    +.++++++++.  .++++|++++|+||||.+.+.   ++|.++|+++|+++|+|++|......    .+   +. 
T Consensus       145 ~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~  224 (395)
T PRK08175        145 VEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPG  224 (395)
T ss_pred             ccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCC
Confidence            2    47888887763  248999999999999999986   78899999999999999997542211    11   11 


Q ss_pred             -CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHHHH
Q 013019          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRM  420 (451)
Q Consensus       346 -~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~~L  420 (451)
                       .+..+++.|+||.++.+| .+.||+++++++++++++.+.....+.+......+...++    .+....++..++...+
T Consensus       225 ~~~~~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~  303 (395)
T PRK08175        225 AKDVAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVL  303 (395)
T ss_pred             cccCEEEEeeccccccCcc-hhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence             123467899999998776 5789999999999998877654443333333222222222    2333344555677778


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|+++
T Consensus       304 ~~~L~~~  310 (395)
T PRK08175        304 VKGLHEA  310 (395)
T ss_pred             HHHHHHc
Confidence            8888776

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.83  E-value=1.2e-18  Score=176.89  Aligned_cols=214  Identities=16%  Similarity=0.156  Sum_probs=156.2

Q ss_pred             hhHHHHHHHHHhhhCC--Cc-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          210 PTTVVVEEKMSALEGA--ES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ...+++++.+++++|.  ++ .+++++|++|+..++.+++++||+|++..+.|.+..  +...++..|.++.+++.    
T Consensus        32 ~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  109 (356)
T cd06451          32 ALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR--WADMAERYGADVDVVEKPWGE  109 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH--HHHHHHHhCCCeEEeecCCCC
Confidence            3467899999999997  23 456677899999999999999999999988776531  22345667888777642    


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccCC
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l~  360 (451)
                       .|+++++++++++++++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+. ..+....|+|+++.|++|+++
T Consensus       110 ~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~  189 (356)
T cd06451         110 AVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALG  189 (356)
T ss_pred             CCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEEecCchhcc
Confidence             478999999976358999999999999999999999999999999999999875432 233345689999999999999


Q ss_pred             ccccceeEEEEeCHHHHHHHHH---Hh----------H------hhCCCccHHHHHHHHHhhHH-----HHHHHHHHHHH
Q 013019          361 GHNDVLAGSISGSGKLVTQIRN---LH----------H------VLGGALNPNAAYLIIRGMKT-----LHLRVQQQNST  416 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr~---~~----------~------~~G~~ls~~~a~l~lrgL~t-----l~~Rl~~~~~n  416 (451)
                      ++.  .+|+++.++++++++..   ..          .      ..+.+.+....+.+..+++.     +....++..++
T Consensus       190 ~p~--g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~  267 (356)
T cd06451         190 APP--GLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRL  267 (356)
T ss_pred             CCC--CcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            874  36999999988877653   00          0      11122223222222223322     23345566677


Q ss_pred             HHHHHHHHHcC
Q 013019          417 ALRMAEILEAH  427 (451)
Q Consensus       417 A~~Lae~L~~~  427 (451)
                      +..+.+.|++.
T Consensus       268 ~~~l~~~L~~~  278 (356)
T cd06451         268 AKALREGLEAL  278 (356)
T ss_pred             HHHHHHHHHHc
Confidence            88888888875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.82  E-value=1.3e-18  Score=180.87  Aligned_cols=211  Identities=20%  Similarity=0.221  Sum_probs=158.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d  286 (451)
                      ++...+||++|++++|.+.+++++||++|+..++..+.+  +||.|+..+..|+.+...+    ...|.++..++..|++
T Consensus        89 ~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~----~~~g~~~~~~~~~d~~  164 (406)
T PRK13393         89 NHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGI----RHSRAEKRIFRHNDPA  164 (406)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHH----HHcCCeEEEeCCCCHH
Confidence            456789999999999999999999999999999987765  7888887777777655433    3346677777777888


Q ss_pred             HHHHhhc---CCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---------cccCCCcEEEEC
Q 013019          287 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHS  354 (451)
Q Consensus       287 ~Le~ai~---~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---------pl~~GaDiVv~S  354 (451)
                      ++++.++   ++++++|++|+++|++|.+.|+++|.++|+++|+++|+|++++.++..+         .+....|+++.|
T Consensus       165 ~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~t  244 (406)
T PRK13393        165 DLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGT  244 (406)
T ss_pred             HHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEe
Confidence            8887774   2247899999999999999999999999999999999999976443211         111225788899


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++|.+++.    ||++++++++++.++.....  ++...++..+..+...|+.+   ..+.++..++.+.+.+.|++.
T Consensus       245 lsKa~g~~----GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (406)
T PRK13393        245 LAKAFGVM----GGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA  318 (406)
T ss_pred             Cchhhccc----CceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc
Confidence            99999875    58999999998888765543  24455665555444444433   233355567778888888764

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.82  E-value=8.9e-19  Score=185.81  Aligned_cols=217  Identities=15%  Similarity=0.234  Sum_probs=147.9

Q ss_pred             cCCCch-hHHHHHHHHHhhhC---------CCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcC
Q 013019          205 GRYGNP-TTVVVEEKMSALEG---------AESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       205 ~R~~np-t~~~Lee~LA~l~g---------ae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      .+|+++ ....|++.||++++         ..+.|++++|+ +++..++.+++++||.|++++|.|......+.   ...
T Consensus        80 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~---~~~  156 (468)
T PLN02450         80 ALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLK---WRT  156 (468)
T ss_pred             hcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHh---hcC
Confidence            345444 24468888888763         13346666666 89999999999999999999999988654332   135


Q ss_pred             CcEEEEeCC-------CCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCC
Q 013019          274 GITATVIDP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  338 (451)
Q Consensus       274 Gi~v~~vd~-------~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~  338 (451)
                      |+++..++.       .|++++++++++     .++++|++++|+||||.+++   +++|.++|+++|++||+||+|+..
T Consensus       157 g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~  236 (468)
T PLN02450        157 GVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGT  236 (468)
T ss_pred             CcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEcccccc
Confidence            776665542       256888887753     25899999999999999986   567888899999999999998743


Q ss_pred             Ccc-----cccc------------CCCcEEEECCcccCCccccceeEEEEeCHH-HHHHHHHHhHhhCCCccHHHHHHHH
Q 013019          339 LNQ-----KALS------------LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLII  400 (451)
Q Consensus       339 ~~~-----~pl~------------~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e-li~~lr~~~~~~G~~ls~~~a~l~l  400 (451)
                      ...     ..+.            ...-+++.|+||.++.+| ++.|+++++++ +++.+..... .+ .++......+.
T Consensus       237 ~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~li~~~~~l~~~~~~~~~-~~-~~s~~~Q~a~~  313 (468)
T PLN02450        237 VFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPG-FRVGAIYSNDEMVVSAATKMSS-FG-LVSSQTQYLLS  313 (468)
T ss_pred             ccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCC-ccEEEEEECCHHHHHHHHHHhh-cC-CCCHHHHHHHH
Confidence            211     1111            123488999999998666 67899999754 4555554432 22 23444444433


Q ss_pred             HhhH-------HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          401 RGMK-------TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       401 rgL~-------tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ..|+       .+....++..++.+.+.+.|+++
T Consensus       314 ~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~  347 (468)
T PLN02450        314 ALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA  347 (468)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3332       23344566667777888888876

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.82  E-value=1.4e-18  Score=180.38  Aligned_cols=212  Identities=20%  Similarity=0.222  Sum_probs=157.9

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCH
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~  285 (451)
                      .++...+||++|++++|.+.+++++||++|+..++..+..  +++.|+.....|......    +...++++..++..|+
T Consensus        89 ~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~----~~~~~~~~~~~~~~d~  164 (407)
T PRK09064         89 TNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEG----IRRSRCEKHIFRHNDV  164 (407)
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHH----HHHcCCcEEEECCCCH
Confidence            3678899999999999988999999999998888877654  677676665555544322    2345666666667788


Q ss_pred             HHHHHhhcC---CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---------cccCCCcEEEE
Q 013019          286 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLH  353 (451)
Q Consensus       286 d~Le~ai~~---~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---------pl~~GaDiVv~  353 (451)
                      +++++.++.   .++++|++|+|+||+|.+.|+++|.++|+++|++||+||+|+.+...+         .+....|+++.
T Consensus       165 ~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~  244 (407)
T PRK09064        165 AHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEG  244 (407)
T ss_pred             HHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEE
Confidence            888887752   248999999999999999999999999999999999999986432111         11113589999


Q ss_pred             CCcccCCccccceeEEEEeCHHHHHHHHHHhHhh--CCCccHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHcC
Q 013019          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL--GGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       354 S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~--G~~ls~~~a~l~lrgL~tl~---~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      |++|.++..    ||++++++++++.++.....+  ....++..+..++..++.+.   ...++..++...+.+.|++.
T Consensus       245 t~sKa~g~~----GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (407)
T PRK09064        245 TLAKAFGVM----GGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA  319 (407)
T ss_pred             ecchhhhcc----CceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            999999865    589999999988887654322  33456666555555665543   23566777888888888764

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.82  E-value=2.6e-18  Score=180.78  Aligned_cols=209  Identities=19%  Similarity=0.211  Sum_probs=164.3

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH---------ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al---------l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      .+...+||++|++++|.+.+++++||++|+..++.++         +++||+||++.+.|..+...+    ...|.++.+
T Consensus        62 G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v----~~~G~~pv~  137 (438)
T PRK15407         62 GRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPI----IQNGLVPVF  137 (438)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHH----HHcCCEEEE
Confidence            4678899999999999999999999999999988876         478999999999998876443    345777776


Q ss_pred             eCC------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc--cc-cccCCCcE
Q 013019          280 IDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QK-ALSLGADL  350 (451)
Q Consensus       280 vd~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~--~~-pl~~GaDi  350 (451)
                      +|.      .|+++++++++++ +++|++++   ++|...|+++|.++|+++|++||+|++++.+..  .+ ...+| |+
T Consensus       138 vdvd~~~~~id~~~le~~i~~~-tkaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~  212 (438)
T PRK15407        138 VDVELPTYNIDASLLEAAVSPK-TKAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DI  212 (438)
T ss_pred             EecCCCcCCcCHHHHHHHcCcC-CeEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ce
Confidence            653      3789999999874 99999854   468888999999999999999999999876532  22 22333 99


Q ss_pred             EEECCc--ccCCccccceeEEEEeCH-HHHHHHHHHhHh-------------------------------------hC--
Q 013019          351 VLHSAT--KFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-------------------------------------LG--  388 (451)
Q Consensus       351 Vv~S~S--K~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~-------------------------------------~G--  388 (451)
                      .++|++  |.+....   ||++++++ ++.++++..+..                                     .|  
T Consensus       213 ~~fSf~~~k~~~~ge---GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n  289 (438)
T PRK15407        213 ATLSFYPAHHITMGE---GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYN  289 (438)
T ss_pred             EEEeCCCCCCccccC---ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccc
Confidence            999975  6565432   78888875 455555543320                                     12  


Q ss_pred             CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 013019          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       389 ~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      ..++.+.|.+.+..|+.++.++++..++++.+.+.|.+.++
T Consensus       290 ~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~  330 (438)
T PRK15407        290 LKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLED  330 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            24677888999999999999999999999999999988774

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.82  E-value=2.5e-18  Score=182.88  Aligned_cols=215  Identities=17%  Similarity=0.170  Sum_probs=147.3

Q ss_pred             HHHHHHHHHhhhC----C---CcEEEeCCHH-HHHHHHHHHHc-cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          212 TVVVEEKMSALEG----A---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       212 ~~~Lee~LA~l~g----a---e~~vv~sSG~-aAi~~al~all-~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      ...|++.|+++++    .   ++.|++++|. +++..++.+++ ++||+|++++|.|......+    +..|.++..++ 
T Consensus       117 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~----~~~g~~~v~v~~  192 (481)
T PTZ00377        117 YPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAI----TLLGGKQVPYYL  192 (481)
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHH----HHcCCEEEEEEe
Confidence            5567777777653    1   3345555555 99999999998 79999999999999865433    44566555443 


Q ss_pred             ------CCCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-c--c--
Q 013019          282 ------PADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-Q--K--  342 (451)
Q Consensus       282 ------~~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-~--~--  342 (451)
                            ..|+++|++++++     .++|+|++++|+||||.+++   +++|+++|+++|++||+|++|..... .  .  
T Consensus       193 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~  272 (481)
T PTZ00377        193 DEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFI  272 (481)
T ss_pred             ccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcc
Confidence                  1368999998864     14899999999999999997   78899999999999999999865321 0  0  


Q ss_pred             cc-----cCC-------CcEEEECCcccC-CccccceeEEEEe---CHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH--
Q 013019          343 AL-----SLG-------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--  404 (451)
Q Consensus       343 pl-----~~G-------aDiVv~S~SK~l-~G~gdv~gG~Iv~---~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~--  404 (451)
                      ++     .+.       .-++++|+||.+ +.+| .++||+++   ++++++++...+.. ..+.+.....++...++  
T Consensus       273 s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~~~~~-~~~~~~~~Q~a~~~~l~~~  350 (481)
T PTZ00377        273 SFRKVLLELPAEYNTDVELVSFHSTSKGIIGECG-RRGGYFELTNIPPEVREQIYKLASI-NLCSNVVGQLMTGLMCNPP  350 (481)
T ss_pred             cHHHHHHhhcccccCCeEEEEEecCCcccccCCc-CceEEEEEeCCCHHHHHHHHHHhhe-ecCCChHHHHHHHHHhCCC
Confidence            10     111       137889999975 5444 56888886   88999988876643 22344444444333331  


Q ss_pred             --------HHHHHH----HHHHHHHHHHHHHHHcCCCeEE
Q 013019          405 --------TLHLRV----QQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       405 --------tl~~Rl----~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                              .....+    ++..++...+.+.|+++|++..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~  390 (481)
T PTZ00377        351 REGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSC  390 (481)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEe
Confidence                    122222    2345677788899988877643

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.82  E-value=1.4e-18  Score=177.60  Aligned_cols=216  Identities=15%  Similarity=0.115  Sum_probs=151.9

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+|+.+....|++.||++++. ++.|++++|+ +++..++.++. +||+|++++|+|.....    .++..|+++..++.
T Consensus        52 ~~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~----~~~~~g~~~~~v~~  126 (360)
T PRK07392         52 RHYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRR----ALRAFGATVKELPL  126 (360)
T ss_pred             hcCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHH----HHHHcCCeEEEEec
Confidence            445666667899999999975 3445556655 89988888765 68999999999988653    34456776655532


Q ss_pred             ----------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc---cc-c---c
Q 013019          283 ----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KA-L---S  345 (451)
Q Consensus       283 ----------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~---~p-l---~  345 (451)
                                .+++++++.. + +++++++++|+||||.+++.++|.++++++++ +|+||+|......   .+ +   .
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~  203 (360)
T PRK07392        127 PLDQPSPGLTLRLQTLPPQL-T-PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLA  203 (360)
T ss_pred             ccccCCcccccCHHHHHHhc-c-CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhh
Confidence                      2355555543 2 47999999999999999999999999999985 6779998654211   11 1   1


Q ss_pred             -CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHHHHHH
Q 013019          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMA  421 (451)
Q Consensus       346 -~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA~~La  421 (451)
                       ...-+++.|+||.++.+| ++.||++++++++++++..+..  ..++....+++...++.   .....+...++.+.+.
T Consensus       204 ~~~~vi~i~S~SK~~~l~G-lRiG~~v~~~~~~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~  280 (360)
T PRK07392        204 EYPNLIILRSLTKFYSLPG-LRLGYAIAHPDRLQRWQQWRDP--WPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALF  280 (360)
T ss_pred             cCCCEEEEEechhhhcCCc-hheeeeeCCHHHHHHHHhhCCC--CCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence             123488999999998776 6789999999998888765532  34556665555544432   2222344556777888


Q ss_pred             HHHHcCCCeE
Q 013019          422 EILEAHPKVL  431 (451)
Q Consensus       422 e~L~~~p~V~  431 (451)
                      +.|+.++++.
T Consensus       281 ~~L~~~~~~~  290 (360)
T PRK07392        281 QGLASLPGLT  290 (360)
T ss_pred             HHHHhCCCcE
Confidence            8898877653

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.82  E-value=2.4e-18  Score=175.79  Aligned_cols=216  Identities=14%  Similarity=0.206  Sum_probs=153.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ..+|+++....|+++++++++. .+.+++++|+ +++..++.++ .+ +.|++++|+|+....    .+...|.++..++
T Consensus        48 ~~~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~----~~~~~g~~~~~~~  121 (354)
T PRK06358         48 LVEYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT-KP-KKVLILAPTFAEYER----ALKAFDAEIEYAE  121 (354)
T ss_pred             hhcCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-CC-CcEEEecCChHHHHH----HHHHcCCeeEEEe
Confidence            3456777778999999999976 3456666666 8888888775 44 689999999986543    3445677766553


Q ss_pred             C-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----cc---
Q 013019          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL---  344 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----pl---  344 (451)
                      .       .| +++.+.+.+ ++++|++++|+||||.+++   +++|.++|+++|+++|+|++|.......    ++   
T Consensus       122 ~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  199 (354)
T PRK06358        122 LTEETNFAAN-EIVLEEIKE-EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYL  199 (354)
T ss_pred             CccccCCCcc-HHHHHhhcc-CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhc
Confidence            2       24 455555655 4899999999999999996   7788888999999999999986543211    11   


Q ss_pred             c-CCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHH
Q 013019          345 S-LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALR  419 (451)
Q Consensus       345 ~-~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~  419 (451)
                      . ...-+++.|+||.++.+| ++.||+++ +++++++++..+..+  .++....+++...+   +.+...++...++.+.
T Consensus       200 ~~~~~vi~~~S~SK~~gl~G-~RiG~lv~~~~~~~~~~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~  276 (354)
T PRK06358        200 ENFKNLIIIRAFTKFFAIPG-LRLGYGLTSNKNLAEKLLQMREPW--SINTFADLAGQTLLDDKEYIKKTIQWIKEEKDF  276 (354)
T ss_pred             cCCCCEEEEEechhhccCcc-hhheeeecCCHHHHHHHHHhCCCC--cchHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            1 123488999999998776 67899887 567888887766433  34555545444444   2344455666777888


Q ss_pred             HHHHHHcCCCe
Q 013019          420 MAEILEAHPKV  430 (451)
Q Consensus       420 Lae~L~~~p~V  430 (451)
                      +.+.|++++++
T Consensus       277 l~~~L~~~~~~  287 (354)
T PRK06358        277 LYNGLSEFKGI  287 (354)
T ss_pred             HHHHHhcCCCc
Confidence            99999887764

>PLN02822 serine palmitoyltransferase

Probab=99.82  E-value=2.1e-18  Score=183.52  Aligned_cols=214  Identities=17%  Similarity=0.167  Sum_probs=163.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      ++...+||++|+++++.++++++++|..++..++.+++++||.|++....|..+..    .+...+.++.+++..|.+++
T Consensus       153 ~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~----~~~ls~~~~~~~~~nd~~~l  228 (481)
T PLN02822        153 IDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQN----GLYLSRSTIVYFKHNDMESL  228 (481)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHH----HHHHcCCeEEEECCCCHHHH
Confidence            46688999999999999899999999988999999999999999998877766543    23334667778887777777


Q ss_pred             HHhhcC--------CCe-EEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc-------ccc---CCCc
Q 013019          289 EAALNN--------NNV-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------ALS---LGAD  349 (451)
Q Consensus       289 e~ai~~--------~~t-klV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~-------pl~---~GaD  349 (451)
                      +..+++        .++ ++|++|++.|++|.+.|+++|.++|++||+++|+||+++.+...+       -..   ...|
T Consensus       229 ~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~d  308 (481)
T PLN02822        229 RNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKID  308 (481)
T ss_pred             HHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCe
Confidence            665531        124 799999999999999999999999999999999999987543221       111   1368


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L  424 (451)
                      |++.|++|.++..    ||++++++++++.++....  .++..+++..+..++..|+.+   ...+++..++.+.+.+.|
T Consensus       309 ii~~s~sKalg~~----GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L  384 (481)
T PLN02822        309 IITAAMGHALATE----GGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGL  384 (481)
T ss_pred             EEEecchhhhhhC----CeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9999999999855    5899999999988775332  234445566555544455433   446677888999999999


Q ss_pred             HcCCCe
Q 013019          425 EAHPKV  430 (451)
Q Consensus       425 ~~~p~V  430 (451)
                      ++.+++
T Consensus       385 ~~~~g~  390 (481)
T PLN02822        385 SDIPGL  390 (481)
T ss_pred             HhcCCc
Confidence            876443

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.81  E-value=2.8e-18  Score=171.61  Aligned_cols=249  Identities=20%  Similarity=0.215  Sum_probs=184.9

Q ss_pred             cccCCCccCCHHHHHHHHhcc-cCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcC
Q 013019          178 VNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT  256 (451)
Q Consensus       178 ~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~  256 (451)
                      +.|+++.-+..+.++.+...+ ...-.||  .+|+..++|+++++++|.+.+++++||++|+.++|.+.++||+.||+..
T Consensus         4 f~SDn~~g~~~~m~eam~~a~~~~~~~YG--~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~   81 (342)
T COG2008           4 FRSDNVAGPTPEMREALAAANAVGDDVYG--EDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHE   81 (342)
T ss_pred             cccCccCCCCHHHHHHHHhccccCCCCCC--CCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhcCCCCeEEEec
Confidence            567788878777777666555 4455676  6799999999999999999999999999999999999999999999998


Q ss_pred             CCCcchHHHHHHhhhcC--CcEEEEeC----CCCHHHHHHhhcCC-----CeEEEEEeCCCCCcccccc---HHHHHHHH
Q 013019          257 DCYRKTRIFIETVLPKM--GITATVID----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLC  322 (451)
Q Consensus       257 ~~Y~~t~~~l~~~l~~~--Gi~v~~vd----~~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~D---L~~IaelA  322 (451)
                      ..|-.+++.-  ..+.+  +.++..++    ..++++|+.++.++     ++.++++++..|..|++++   |++|.++|
T Consensus        82 ~aHi~~~E~G--a~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~  159 (342)
T COG2008          82 TAHIYTDECG--APEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVC  159 (342)
T ss_pred             cccceecccC--cHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHH
Confidence            8875544211  11222  23333333    24799999988642     3677888787777899987   56788889


Q ss_pred             HhcCCEEEEecCC------CCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccH--H
Q 013019          323 HKKGAIVCIDGTF------ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP--N  394 (451)
Q Consensus       323 ~~~g~~lVVD~tf------a~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~--~  394 (451)
                      |++|++|++|.+-      +..........++|++...+||.++.+.   +.+++++.+++++++.++...|+.+..  +
T Consensus       160 k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~  236 (342)
T COG2008         160 KEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGLMRKARF  236 (342)
T ss_pred             HHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHHHhcccHhhhhH
Confidence            9999999999981      1122233345689999999999998874   667789999999999999988876543  2


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHcCCCeEEE
Q 013019          395 AAYLIIRGMKTLHLRVQQQNST--ALRMAEILEAHPKVLLL  433 (451)
Q Consensus       395 ~a~l~lrgL~tl~~Rl~~~~~n--A~~Lae~L~~~p~V~~V  433 (451)
                      -+...+..|+.-.-++....+|  |++|++.|+..|+++..
T Consensus       237 laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~  277 (342)
T COG2008         237 LAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLA  277 (342)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceec
Confidence            2333334455544455555677  99999999988887553

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.81  E-value=2.7e-18  Score=171.68  Aligned_cols=218  Identities=17%  Similarity=0.215  Sum_probs=157.9

Q ss_pred             CCchhHHHHHHHHHhhhCC--------CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          207 YGNPTTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga--------e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      ...+....+++.++++++.        ++.+++++|++++..++.++.++||+|+++++.|.+....    ++..|.++.
T Consensus        33 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~----~~~~~~~~~  108 (350)
T cd00609          33 YPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAA----ARLAGAEVV  108 (350)
T ss_pred             CCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHCCCEEE
Confidence            3445566677777776653        3567777888999999999999999999999999987644    445677776


Q ss_pred             EeCCC-----CH--HHHHHhhcCCCeEEEEEeCCCCCccccccHHH---HHHHHHhcCCEEEEecCCCCCCc--------
Q 013019          279 VIDPA-----DM--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTFATPLN--------  340 (451)
Q Consensus       279 ~vd~~-----D~--d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~---IaelA~~~g~~lVVD~tfa~~~~--------  340 (451)
                      .++..     +.  +.++..+++ ++++|++++|+||+|.+.|+++   |.++|+++|+++|+|++++.+..        
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~  187 (350)
T cd00609         109 PVPLDEEGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPAL  187 (350)
T ss_pred             EEecccccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccc
Confidence            66532     12  556666655 4999999999999999997554   55899999999999999765321        


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNS  415 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~  415 (451)
                      ......+.|+++.|++|+++.++ ..+|++++++ ++++.++......+...+...+..+...++    .+....+++.+
T Consensus       188 ~~~~~~~~~~~~~s~~K~~~~~g-~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  266 (350)
T cd00609         188 ALLDAYERVIVLRSFSKTFGLPG-LRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRR  266 (350)
T ss_pred             cCcCccCcEEEEeecccccCCcc-cceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            12334568999999999997333 4689999998 788888877665444455554444433333    33444566778


Q ss_pred             HHHHHHHHHHcCCCe
Q 013019          416 TALRMAEILEAHPKV  430 (451)
Q Consensus       416 nA~~Lae~L~~~p~V  430 (451)
                      +++.+.+.|++++..
T Consensus       267 ~~~~l~~~L~~~~~~  281 (350)
T cd00609         267 RRDALLEALKELGPL  281 (350)
T ss_pred             HHHHHHHHHHhcCCc
Confidence            888999999987654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.81  E-value=6e-18  Score=175.72  Aligned_cols=211  Identities=14%  Similarity=0.129  Sum_probs=142.6

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      ...|++.+++++    |.    ++.+++++|+ +++..++.+++++||.|++++|+|......    +...|.++..++ 
T Consensus        73 ~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~g~~~~~v~~  148 (403)
T PRK08636         73 IYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQA----FILAGGNVHKMPL  148 (403)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHH----HHhcCCEEEEEec
Confidence            345666666654    52    3246666665 999999999999999999999999986543    344577665543 


Q ss_pred             ------CCCHH----HHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----c
Q 013019          282 ------PADME----GLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K  342 (451)
Q Consensus       282 ------~~D~d----~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~  342 (451)
                            ..|++    .+++++++  .++++|++++|+||||.+++   +++|.++|++|+++||+|++|......    .
T Consensus       149 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~  228 (403)
T PRK08636        149 EYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTP  228 (403)
T ss_pred             cccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCC
Confidence                  23444    45666642  25899999999999999986   578888999999999999998753211    1


Q ss_pred             c---ccC--CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHH---HHHHHHh-hHHHHHHHHHH
Q 013019          343 A---LSL--GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA---AYLIIRG-MKTLHLRVQQQ  413 (451)
Q Consensus       343 p---l~~--GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~---a~l~lrg-L~tl~~Rl~~~  413 (451)
                      +   ++.  ...+++.|+||.++.+| ++.||++++++++++++..........+...   +..++.+ .+.+....+..
T Consensus       229 ~~~~~~~~~~~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~  307 (403)
T PRK08636        229 SILEVEGAKDVAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETY  307 (403)
T ss_pred             ChhcCCCccccEEEEEecccccCCcc-ceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            1   111  12355789999998776 6899999999999988876654322222222   2222222 22333334455


Q ss_pred             HHHHHHHHHHHHcC
Q 013019          414 NSTALRMAEILEAH  427 (451)
Q Consensus       414 ~~nA~~Lae~L~~~  427 (451)
                      .++...+.+.|+++
T Consensus       308 ~~~~~~l~~~L~~~  321 (403)
T PRK08636        308 RKRRDVLIESFANA  321 (403)
T ss_pred             HHHHHHHHHHHHHC
Confidence            66777788888875

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.81  E-value=1.1e-18  Score=177.58  Aligned_cols=231  Identities=18%  Similarity=0.211  Sum_probs=170.3

Q ss_pred             HhcccCCccccCCCchhHHHHHHHHHhhhCC-CcEEEe-CCHHHHHHHHHHHH--c----cCCCeEEEcCCCCcchHHHH
Q 013019          195 KEKRRASFEYGRYGNPTTVVVEEKMSALEGA-ESTVIM-ASGMSASTVMLLAL--V----PAGGHIVTTTDCYRKTRIFI  266 (451)
Q Consensus       195 ~~~~~~~~~Y~R~~npt~~~Lee~LA~l~ga-e~~vv~-sSG~aAi~~al~al--l----~~GD~VIv~~~~Y~~t~~~l  266 (451)
                      +.++.+.|.|||......+..++.+|++.|+ +..++| ++|++++.+++...  .    +.|.|||++.-.|......+
T Consensus        29 fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~  108 (386)
T COG1104          29 FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTC  108 (386)
T ss_pred             cCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHH
Confidence            4566667889888888889999999999997 334555 55559988888762  2    24789999999999988877


Q ss_pred             HHhhhcCCcEEEEeCCC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-Cc
Q 013019          267 ETVLPKMGITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LN  340 (451)
Q Consensus       267 ~~~l~~~Gi~v~~vd~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~  340 (451)
                      +.. +..|++|++++++     |+++|+++|+++ |.+|.+...||.+|.++||++|.++|+++|+++++|.+++.+ +.
T Consensus       109 ~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~~-T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkip  186 (386)
T COG1104         109 RYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRPD-TILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIP  186 (386)
T ss_pred             HHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCCC-ceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCcee
Confidence            655 7789999998764     799999999985 999999999999999999999999999999999999998765 34


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCHHHH-HH-HHHHhH---hhCCCc--cHHHH--HHHHHhhHHHHHHHH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-TQ-IRNLHH---VLGGAL--NPNAA--YLIIRGMKTLHLRVQ  411 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli-~~-lr~~~~---~~G~~l--s~~~a--~l~lrgL~tl~~Rl~  411 (451)
                      .+...+++|++..|.||+.|..|   .|+++.++... +. +..-.+   ...++.  ....+  ..+....+.+....+
T Consensus       187 i~~~~~~vD~ls~SaHK~~GpkG---iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~  263 (386)
T COG1104         187 IDLEELGVDLLSFSAHKFGGPKG---IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENA  263 (386)
T ss_pred             ccccccCcceEEeehhhccCCCc---eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456689999999999998877   67777654321 11 110000   011111  12211  122334556666667


Q ss_pred             HHHHHHHHHHHHHHcC-CCe
Q 013019          412 QQNSTALRMAEILEAH-PKV  430 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~-p~V  430 (451)
                      +..+...+|.+.|.+. |.+
T Consensus       264 ~~~~lr~~l~~~l~~~~p~~  283 (386)
T COG1104         264 RLRKLRDRLEDGLLEIIPDV  283 (386)
T ss_pred             HHHHHHHHHHHHHHhcCCcE
Confidence            7777777888888765 555

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.81  E-value=2.8e-18  Score=175.06  Aligned_cols=212  Identities=13%  Similarity=0.126  Sum_probs=144.4

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      +|+++....|++.|++.++. .+.+++++|. +++..++.+++++||+|++++|+|.....    .....|..+..++. 
T Consensus        61 ~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~----~~~~~g~~~~~~~l~  136 (357)
T PRK14809         61 SYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGM----SARYHHGEVREYPVS  136 (357)
T ss_pred             cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH----HHHHcCCeEEEEecc
Confidence            34555567899999999985 4456666665 89999999999999999999999975332    22334555544322 


Q ss_pred             ------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCCcccc-c---c-CCCc
Q 013019          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLNQKA-L---S-LGAD  349 (451)
Q Consensus       283 ------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~~~~p-l---~-~GaD  349 (451)
                            .+.+++++.+.  ++++|++++|+||||.+++.+++.++++..  +++||+||+|........ .   + ....
T Consensus       137 ~~~~~~~~~~~~~~~~~--~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~v  214 (357)
T PRK14809        137 KADDFEQTADTVLDAYD--GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDV  214 (357)
T ss_pred             cCcCCCcCHHHHHHhhc--CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCE
Confidence                  24566666553  379999999999999999988777777653  789999999875422111 1   1 1234


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHc
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      +++.|+||.++.+| ++.||+++++++++++++....+  .++...+..++..+   +.+....+...++...+.+.|..
T Consensus       215 i~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  291 (357)
T PRK14809        215 AVLRTFSKAYGLAG-LRLGYAVVPEEWADAYARVNTPF--AASELACRAGLAALDDDEHVERTVETARWAREYIREELDA  291 (357)
T ss_pred             EEEecchhHhcCcc-hhheeeecCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            78899999998776 57899999999999888765433  34555544444443   22333334444455556666643

>PRK02948 cysteine desulfurase; Provisional

Probab=99.81  E-value=1.3e-18  Score=178.80  Aligned_cols=215  Identities=16%  Similarity=0.179  Sum_probs=153.2

Q ss_pred             chhHHHHHHHHHhhhCC-CcEEEeCCH-HHHHHHHHHHHc----cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          209 NPTTVVVEEKMSALEGA-ESTVIMASG-MSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~ga-e~~vv~sSG-~aAi~~al~all----~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ....+.+++.+++++|. ++.+++++| ++++..++.+++    ++||+|+++...|.+..... ..++..|+++..++.
T Consensus        42 ~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~-~~~~~~g~~v~~v~~  120 (381)
T PRK02948         42 SSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYF-QSLESQGYTVTEIPV  120 (381)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHH-HHHHhCCCEEEEEee
Confidence            34467889999999985 456666555 688888887775    57899999998888766554 345667888777653


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~S  356 (451)
                           .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|+++..+ ...+..++|+|+++.|++
T Consensus       121 ~~~~~~d~~~l~~~l~~~-~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~  199 (381)
T PRK02948        121 DKSGLIRLVDLERAITPD-TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAH  199 (381)
T ss_pred             CCCCCCCHHHHHHhcCCC-CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHH
Confidence                 3789999999774 899999999999999999999999999999999999875433 222333568999999999


Q ss_pred             ccCCccccceeEEEEeCHHH-HHHHHH----HhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          357 KFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~el-i~~lr~----~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      |+++.+|   .|+++.++++ +..+..    .......+++......+..++    +.+..+.++..+++..+.+.|++.
T Consensus       200 K~~gp~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  276 (381)
T PRK02948        200 KIYGPKG---VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL  276 (381)
T ss_pred             hcCCCCc---EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9988776   6777777653 111110    000112233333333222232    444555677778888888888887


Q ss_pred             C
Q 013019          428 P  428 (451)
Q Consensus       428 p  428 (451)
                      +
T Consensus       277 ~  277 (381)
T PRK02948        277 P  277 (381)
T ss_pred             C
Confidence            4

>PRK14012 cysteine desulfurase; Provisional

Probab=99.81  E-value=3.1e-18  Score=177.83  Aligned_cols=217  Identities=18%  Similarity=0.252  Sum_probs=151.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all----~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      +..+++|+++++++|.+  +.+++++|++++..++.++.    ++||+|++++..|.+....+. .++..|+++.+++. 
T Consensus        49 ~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~-~~~~~g~~~~~v~~~  127 (404)
T PRK14012         49 EAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLDPQ  127 (404)
T ss_pred             HHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHH-HHHhCCCEEEEEccC
Confidence            45678899999999974  36677777899988887764    789999999999988665443 33456888887754 


Q ss_pred             ----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcc
Q 013019          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (451)
Q Consensus       283 ----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK  357 (451)
                          .|+++|+++++++ +++|++++++||||.+.|+++|.++|+++|+++++|++++.+.. .+....++|+++.|++|
T Consensus       128 ~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K  206 (404)
T PRK14012        128 SNGIIDLEKLEAAMRDD-TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHK  206 (404)
T ss_pred             CCCcCCHHHHHHhcCCC-CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhh
Confidence                3799999999875 99999999999999999999999999999999999999876533 23335689999999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHhH-------hhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHc
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~~-------~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      .+++.+   .|+++.+++...++.....       ...++.+......+..+++    .+..+.+++.+.++.+.+.|++
T Consensus       207 ~~gp~g---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~  283 (404)
T PRK14012        207 IYGPKG---IGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD  283 (404)
T ss_pred             ccCCCc---eEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            876544   4555544433222211100       0011111111111111222    2333456667778888888888


Q ss_pred             CCCeE
Q 013019          427 HPKVL  431 (451)
Q Consensus       427 ~p~V~  431 (451)
                      .+.+.
T Consensus       284 ~~~i~  288 (404)
T PRK14012        284 IEEVY  288 (404)
T ss_pred             CCCEE
Confidence            88775

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.81  E-value=3.4e-18  Score=177.91  Aligned_cols=214  Identities=21%  Similarity=0.209  Sum_probs=151.2

Q ss_pred             CchhHHHHHH----HHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHH-hhhcCCcEEEEeC
Q 013019          208 GNPTTVVVEE----KMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID  281 (451)
Q Consensus       208 ~npt~~~Lee----~LA~l~gae~~-vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~-~l~~~Gi~v~~vd  281 (451)
                      +++..+.+|+    .+++++|.+.. ++++||++|+..++.+++++||+|+++.++|++....... .+...|.++..++
T Consensus        65 ~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  144 (416)
T PRK00011         65 GCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYG  144 (416)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecC
Confidence            4455666666    88999998665 6668999999999999999999999999999764321111 1223345555543


Q ss_pred             ------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-----cccccCCCcE
Q 013019          282 ------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADL  350 (451)
Q Consensus       282 ------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-----~~pl~~GaDi  350 (451)
                            ..|++++++++++.++++|+++.+.  +|...|+++|.++|+++|+++|+|++++.+..     ..++. ++|+
T Consensus       145 ~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di  221 (416)
T PRK00011        145 VDEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADV  221 (416)
T ss_pred             cCcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcE
Confidence                  2478999999975358999986554  45667999999999999999999999754321     23344 7899


Q ss_pred             EEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhh--CCCccHHHHHH---HHHhh-HHHHHHHHHHHHHHHHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPNAAYL---IIRGM-KTLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~--G~~ls~~~a~l---~lrgL-~tl~~Rl~~~~~nA~~Lae~  423 (451)
                      ++.|++|+++|+.   ||+++++ ++++++++......  +.......+.+   +...+ +.+..+++++.++++.+.+.
T Consensus       222 ~~~S~~K~l~g~~---gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  298 (416)
T PRK00011        222 VTTTTHKTLRGPR---GGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEA  298 (416)
T ss_pred             EEecCCcCCCCCC---ceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999997764   8888885 68888887654322  11111122211   11111 23566788899999999999


Q ss_pred             HHcC
Q 013019          424 LEAH  427 (451)
Q Consensus       424 L~~~  427 (451)
                      |++.
T Consensus       299 L~~~  302 (416)
T PRK00011        299 LAER  302 (416)
T ss_pred             HHhC
Confidence            9886

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.81  E-value=6.6e-18  Score=174.65  Aligned_cols=214  Identities=21%  Similarity=0.227  Sum_probs=149.0

Q ss_pred             CchhHHHHHH----HHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHH-HhhhcCCcEEEEe-
Q 013019          208 GNPTTVVVEE----KMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE-TVLPKMGITATVI-  280 (451)
Q Consensus       208 ~npt~~~Lee----~LA~l~gae~~-vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~-~~l~~~Gi~v~~v-  280 (451)
                      +++....+++    .+++++|.+.. ++++||++|+..++.+++++||+|+++++.|++...... ..+...|.++..+ 
T Consensus        59 ~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  138 (402)
T cd00378          59 GCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVP  138 (402)
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEec
Confidence            4455555544    57788998655 555789999999999999999999999999987543211 1134456544333 


Q ss_pred             -C------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-----ccccccCCC
Q 013019          281 -D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGA  348 (451)
Q Consensus       281 -d------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-----~~~pl~~Ga  348 (451)
                       +      ..|++++++++.+.++++|++++|+||  ...|+++|.++|+++|+++|+|+++..+.     ...++. ++
T Consensus       139 ~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~  215 (402)
T cd00378         139 YGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP--RPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GA  215 (402)
T ss_pred             CCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CC
Confidence             2      238999999986445899999888765  56799999999999999999999964322     123344 78


Q ss_pred             cEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhh-CCCccHHHHHH----HHHhhH-HHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVL-GGALNPNAAYL----IIRGMK-TLHLRVQQQNSTALRMA  421 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~-G~~ls~~~a~l----~lrgL~-tl~~Rl~~~~~nA~~La  421 (451)
                      |+++.|++|+++|+.   +|++++++ +++++++...... ...........    +...++ .+..+++++.++++.+.
T Consensus       216 dv~~~s~sK~l~G~~---gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  292 (402)
T cd00378         216 DVVTTTTHKTLRGPR---GGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA  292 (402)
T ss_pred             cEEEeccccCCCCCC---ceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999999997764   78888876 8888887654321 11111111111    112222 44566788889999999


Q ss_pred             HHHHcC
Q 013019          422 EILEAH  427 (451)
Q Consensus       422 e~L~~~  427 (451)
                      +.|.++
T Consensus       293 ~~L~~~  298 (402)
T cd00378         293 EALKER  298 (402)
T ss_pred             HHHHhC
Confidence            999887

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.81  E-value=4.2e-18  Score=176.80  Aligned_cols=218  Identities=17%  Similarity=0.238  Sum_probs=152.8

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all----~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ...+.+++.|++++|.+  +.+++++|++++..++.++.    ++||+|+++.+.|.+....+. .++..|+++.+++. 
T Consensus        47 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~-~~~~~g~~v~~v~~~  125 (402)
T TIGR02006        47 EAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCR-YLEREGFEVTYLPPK  125 (402)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHH-HHHhcCCEEEEEccC
Confidence            45677899999999963  45555566689888876653    689999999999988665543 34556888888754 


Q ss_pred             ----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcc
Q 013019          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (451)
Q Consensus       283 ----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK  357 (451)
                          .|+++|+++++++ +++|++++++||||.+.|+++|.++|+++|+++++|++++.+.. .+..+.|+|+++.|++|
T Consensus       126 ~~~~~d~~~l~~~l~~~-~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K  204 (402)
T TIGR02006       126 SNGLIDLEELKAAIRDD-TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHK  204 (402)
T ss_pred             CCCcCCHHHHHHhcCCC-CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhh
Confidence                3799999999875 89999999999999999999999999999999999999876532 23335689999999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHhH-------hhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHc
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~~-------~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      +++++|   .|+++.+++...++.....       ...++.+......+...++.    +..+.++..+.+..+.+.|++
T Consensus       205 ~~gp~G---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~  281 (402)
T TIGR02006       205 IYGPKG---IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS  281 (402)
T ss_pred             hcCCCc---eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            887555   5666655443322221110       11122222222222233333    334445566677778888888


Q ss_pred             CCCeEE
Q 013019          427 HPKVLL  432 (451)
Q Consensus       427 ~p~V~~  432 (451)
                      .|+|..
T Consensus       282 ~~~v~~  287 (402)
T TIGR02006       282 IEEVYL  287 (402)
T ss_pred             CCCEEE
Confidence            887743

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.80  E-value=2.9e-18  Score=176.38  Aligned_cols=221  Identities=19%  Similarity=0.265  Sum_probs=148.5

Q ss_pred             CCchhHHHHHHHHHhhh---CC---CcEEEeCCHHHHHHHHHHHHc-----cC-CCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          207 YGNPTTVVVEEKMSALE---GA---ESTVIMASGMSASTVMLLALV-----PA-GGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~---ga---e~~vv~sSG~aAi~~al~all-----~~-GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      |+.+....|++.++++.   ++   ++.++++++++++..++.++.     ++ ||+|+++...|++..... ..++..|
T Consensus        36 ~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~-~~~~~~G  114 (382)
T TIGR03403        36 FGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATC-AFLESLG  114 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHH-HHHHHCC
Confidence            34455555666555544   43   344445555689998888763     45 478999998888766554 3456789


Q ss_pred             cEEEEeCCC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCC
Q 013019          275 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGA  348 (451)
Q Consensus       275 i~v~~vd~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~Ga  348 (451)
                      +++.+++..     |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+ ...+..++|+
T Consensus       115 ~~v~~v~~~~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~  193 (382)
T TIGR03403       115 VEVTYLPINEQGTITAEQVREAITEK-TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGV  193 (382)
T ss_pred             CEEEEEecCCCCCCCHHHHHHhcccC-CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCccccCC
Confidence            998887642     789999999874 899999999999999999999999999999999999997755 3334446789


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHH-HH-HHH---HhHhhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLV-TQ-IRN---LHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALR  419 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli-~~-lr~---~~~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~  419 (451)
                      |+++.|++|+++++|   .|+++.++++. .. +..   ......++++....+.+..+++.    ++...++..+.+++
T Consensus       194 D~~~~s~~K~~gp~G---~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~  270 (382)
T TIGR03403       194 DFLSFSAHKFHGPKG---VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDR  270 (382)
T ss_pred             CEEEEcchhhCCCCc---eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            999999999987766   56666554321 00 000   00000122333332222233322    33344556667778


Q ss_pred             HHHHHHcCCCeEE
Q 013019          420 MAEILEAHPKVLL  432 (451)
Q Consensus       420 Lae~L~~~p~V~~  432 (451)
                      +.+.|++.|+++.
T Consensus       271 l~~~L~~~~~~~~  283 (382)
T TIGR03403       271 LEDALLELPDVFV  283 (382)
T ss_pred             HHHHHhcCCCEEE
Confidence            8888888888744

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.80  E-value=5.2e-18  Score=179.50  Aligned_cols=215  Identities=22%  Similarity=0.222  Sum_probs=155.5

Q ss_pred             cccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .|+  +++...+||++++++++.++++++.+|++|+..++.+++++|| |+++++.|..+...+    ...|.++.+++.
T Consensus        73 ~Y~--~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i----~~~G~~~v~v~~  145 (460)
T PRK13238         73 AYA--GSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHI----ELNGATAVDLVI  145 (460)
T ss_pred             ccC--CCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHH----HHcCCEEEEEec
Confidence            455  5677889999999999999999999999999999999999999 999998887665433    335655554432


Q ss_pred             ---------------CCHHHHHHhhcC---CCeEEEEEeCCCCCcc-cccc---HHHHHHHHHhcCCEEEEecCCCC---
Q 013019          283 ---------------ADMEGLEAALNN---NNVSLFFTESPTNPFL-RCVD---VKLVSDLCHKKGAIVCIDGTFAT---  337 (451)
Q Consensus       283 ---------------~D~d~Le~ai~~---~~tklV~lesPsNPtG-~v~D---L~~IaelA~~~g~~lVVD~tfa~---  337 (451)
                                     .|+++|++++++   .+|++|++++|+||+| .+.+   +++|.++|++||++||+|+++..   
T Consensus       146 ~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a  225 (460)
T PRK13238        146 DEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENA  225 (460)
T ss_pred             cccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhh
Confidence                           578999999974   2599999999999998 6664   67999999999999999997521   


Q ss_pred             --------CCccccc-------cCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHh-----hCCCccHHHH
Q 013019          338 --------PLNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV-----LGGALNPNAA  396 (451)
Q Consensus       338 --------~~~~~pl-------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~-----~G~~ls~~~a  396 (451)
                              ++....+       .-.+|+++.|..|.+.++   .||+++++ ++++++++.....     .-+.++....
T Consensus       226 ~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~  302 (460)
T PRK13238        226 YFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDM  302 (460)
T ss_pred             hhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHH
Confidence                    1111111       123799999999987766   38999988 5788888766321     1122334434


Q ss_pred             HHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 013019          397 YLIIRGMKTL--HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       397 ~l~lrgL~tl--~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ..+..+|+..  ...++...++++.|++.|.+.
T Consensus       303 ~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~  335 (460)
T PRK13238        303 EALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA  335 (460)
T ss_pred             HHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC
Confidence            4444444431  233445555678899999875

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.80  E-value=3.2e-18  Score=173.84  Aligned_cols=208  Identities=15%  Similarity=0.172  Sum_probs=148.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhC---C-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          204 YGRYGNPTTVVVEEKMSALEG---A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~g---a-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      +++|+.+....|++++++.++   . ++.|++++|+ +++..++.++    |+|++++|+|....    ..++..|.++.
T Consensus        50 ~~~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~----~~~~~~g~~~~  121 (335)
T PRK14808         50 LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYR----IFAKAVGAKFL  121 (335)
T ss_pred             hhcCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh----CcEEECCCCHHHHH----HHHHHcCCeEE
Confidence            566677778899999999987   2 4456666666 8998888776    78999999998755    34456688877


Q ss_pred             EeCCCC---HHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc--c-cc-CCCcEE
Q 013019          279 VIDPAD---MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--A-LS-LGADLV  351 (451)
Q Consensus       279 ~vd~~D---~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~--p-l~-~GaDiV  351 (451)
                      .++..+   ++..  .+.  ++++|++++|+||||.+.+.+++.+++ +++++||+||+|.......  + +. ...-++
T Consensus       122 ~v~~~~~~~~~~~--~~~--~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~  196 (335)
T PRK14808        122 EVPLTKDLRIPEV--NVG--EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAV  196 (335)
T ss_pred             EecCCCcCCCChh--Hcc--CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEE
Confidence            765421   1111  232  368999999999999999999999998 5799999999986532111  1 11 123588


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~---lrgL~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +.|+||.++.+| ++.||++++++++++++..+..++  .+.....++   +...+.+..++++..++.+.+.+.|+++
T Consensus       197 ~~S~SK~~~l~G-lRvG~~v~~~~~~~~l~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  272 (335)
T PRK14808        197 IRTFSKAFSLAA-QRIGYVVSSEKFIDAYNRVRLPFN--VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_pred             EEechhhccCcc-cceEEEEeCHHHHHHHHHhcCCCC--CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            899999999666 678999999999999887664433  333333333   3333444555566667777888888876

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.80  E-value=9.6e-18  Score=173.70  Aligned_cols=211  Identities=16%  Similarity=0.184  Sum_probs=147.1

Q ss_pred             hhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          210 PTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      .....|++.++++++        .++.++++++++++..++.+++++||.|++++|+|.....    .++..|+++..++
T Consensus        73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~----~~~~~g~~v~~v~  148 (394)
T PRK06836         73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRF----YVDNHGGKLVVVP  148 (394)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHH----HHHHcCCEEEEEe
Confidence            445567777777653        2445555566699999999999999999999999998553    3456788887775


Q ss_pred             C------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHh------cCCEEEEecCCCCCCcc--c--
Q 013019          282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLNQ--K--  342 (451)
Q Consensus       282 ~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~------~g~~lVVD~tfa~~~~~--~--  342 (451)
                      .      .|++++++++++ ++++|++++|+||||.+.+   +++|+++|++      ||+++|+|++|......  .  
T Consensus       149 ~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~  227 (394)
T PRK06836        149 TDTDTFQPDLDALEAAITP-KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVP  227 (394)
T ss_pred             cCCccCcCCHHHHHhhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCC
Confidence            3      368999999977 4999999999999999987   6677888888      89999999998643211  0  


Q ss_pred             c-c-cCCCcEEEECCcccCCccccceeEEEEeCHHHHHH------HHHHhHhhC-CCccHHHHHHHHHhhHHHHHHHHHH
Q 013019          343 A-L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ------IRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQ  413 (451)
Q Consensus       343 p-l-~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~------lr~~~~~~G-~~ls~~~a~l~lrgL~tl~~Rl~~~  413 (451)
                      . . .....+++.|+||.++.+| ++.|++++++++.+.      +.......+ ...+......+.+.++.- .+.++.
T Consensus       228 ~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~  305 (394)
T PRK06836        228 YIFKYYDNSIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT-VDVSIY  305 (394)
T ss_pred             ChHHccCcEEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh-HHHHHH
Confidence            0 1 1234689999999998776 578999988765432      111122222 234454444444444332 233455


Q ss_pred             HHHHHHHHHHHHcC
Q 013019          414 NSTALRMAEILEAH  427 (451)
Q Consensus       414 ~~nA~~Lae~L~~~  427 (451)
                      .++...+.+.|+++
T Consensus       306 ~~~r~~l~~~L~~~  319 (394)
T PRK06836        306 KRNRDLLYDGLTEL  319 (394)
T ss_pred             HHHHHHHHHHHHhC
Confidence            66677788888876

>PRK06855 aminotransferase; Validated

Probab=99.80  E-value=1.7e-17  Score=174.25  Aligned_cols=213  Identities=15%  Similarity=0.167  Sum_probs=137.5

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--  281 (451)
                      ...|++.+++++    |.    ++.++++++++|+..++. ++.+||.|++++|+|.... ...  ....|+.+..++  
T Consensus        75 ~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~-~~~--~~~~g~~~v~v~~~  150 (433)
T PRK06855         75 VLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHS-SAE--AAHAGYPPVTYRLD  150 (433)
T ss_pred             CHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHH-HHH--HHhcCCeEEEEecc
Confidence            345666666654    42    344444444589888874 8899999999999998733 221  112354443332  


Q ss_pred             -----CCCHHHHHHhhcC-CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----cc-cC-
Q 013019          282 -----PADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL-SL-  346 (451)
Q Consensus       282 -----~~D~d~Le~ai~~-~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----pl-~~-  346 (451)
                           ..|+++|+++++. .+++++++++|+||||.+++   +++|+++|+++|++||+|++|.......    ++ .+ 
T Consensus       151 ~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~  230 (433)
T PRK06855        151 PENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVI  230 (433)
T ss_pred             cccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHc
Confidence                 1378999999863 24799999999999999987   5678888999999999999987542211    11 11 


Q ss_pred             --CCcEEEECCcccCCccccceeEEEEeC-----HH---HHHHHHHHhHhhCCCccHHHHHHHHHhhH------HHHHHH
Q 013019          347 --GADLVLHSATKFIGGHNDVLAGSISGS-----GK---LVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRV  410 (451)
Q Consensus       347 --GaDiVv~S~SK~l~G~gdv~gG~Iv~~-----~e---li~~lr~~~~~~G~~ls~~~a~l~lrgL~------tl~~Rl  410 (451)
                        +-.|++.|+||.++.+| .+.||++++     ++   +++++...... ....+.+.++.+.+.++      .+....
T Consensus       231 ~~~~~I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~  308 (433)
T PRK06855        231 GDVPGIALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILNAKMI-EVCSTTLPQMAIPRIMSHPEYKNYLKERN  308 (433)
T ss_pred             CcCCeEEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHHhhcc-ccCCChHHHHHHHHhhcCCcHHHHHHHHH
Confidence              23488999999998776 578898862     22   23333332221 22334555554444442      233445


Q ss_pred             HHHHHHHHHHHHHHHcCCCe
Q 013019          411 QQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~p~V  430 (451)
                      +...++.+.+.+.|++++++
T Consensus       309 ~~~~~r~~~~~~~L~~~~~~  328 (433)
T PRK06855        309 KRYEKRSNIAYEKLKDVPGL  328 (433)
T ss_pred             HHHHHHHHHHHHHHhcCCCe
Confidence            55667777888889877654

>PRK05839 hypothetical protein; Provisional

Probab=99.80  E-value=7.3e-18  Score=173.52  Aligned_cols=213  Identities=16%  Similarity=0.119  Sum_probs=137.0

Q ss_pred             cCCCchh-HHHHHHHHH----hhhC---CCcEEEeCCHH-HHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhhcC
Q 013019          205 GRYGNPT-TVVVEEKMS----ALEG---AESTVIMASGM-SASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       205 ~R~~npt-~~~Lee~LA----~l~g---ae~~vv~sSG~-aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      .+|+.+. ...|++.++    +.+|   ..+.|++++|+ +++..++.+++  ++||.|+++.|.|......    +...
T Consensus        54 ~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~----~~~~  129 (374)
T PRK05839         54 NKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGA----AIAS  129 (374)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHH----HHhc
Confidence            3444432 245555554    4445   24556666666 78888777764  5799999999999876543    4566


Q ss_pred             CcEEEEeCCC-----CHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---
Q 013019          274 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---  342 (451)
Q Consensus       274 Gi~v~~vd~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---  342 (451)
                      |+++..++..     +++..+..+ + ++++|++++|+||||.+++   +++|+++|+++|++||+||+|.......   
T Consensus       130 g~~v~~v~~~~~~~~~~d~~~~~~-~-~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~  207 (374)
T PRK05839        130 RAKVLLMPLTKENDFTPSLNEKEL-Q-EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPP  207 (374)
T ss_pred             CCEEEEeecccccCCcCCcchhhh-c-cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCC
Confidence            8887776532     122222223 3 4899999999999999986   5677888899999999999987532111   


Q ss_pred             c-c---------cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHH
Q 013019          343 A-L---------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLR  409 (451)
Q Consensus       343 p-l---------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~R  409 (451)
                      . .         ..+.-+++.|+||.++.+| ++.||++++++++++++......+...+......+...+   +.+...
T Consensus       208 s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  286 (374)
T PRK05839        208 SLLEASILVGNESFKNVLVINSISKRSSAPG-LRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFF  286 (374)
T ss_pred             CHhhhhcccCccccCcEEEEeccccccCCcc-ceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHH
Confidence            1 1         1123488999999988776 689999999999999887765554444444333322222   223333


Q ss_pred             HHHHHHHHHHHHHHH
Q 013019          410 VQQQNSTALRMAEIL  424 (451)
Q Consensus       410 l~~~~~nA~~Lae~L  424 (451)
                      .++..++.+.+.+.|
T Consensus       287 ~~~~~~~~~~~~~~l  301 (374)
T PRK05839        287 RNIYAKNLKLAREIL  301 (374)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            344444444455544

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.79  E-value=9.8e-18  Score=174.35  Aligned_cols=169  Identities=15%  Similarity=0.177  Sum_probs=137.2

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae---~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ...+++++.+++++|.+   ..++.++|++++..++..++++||+|++.++.|.+..  +...+++.|++++.++.    
T Consensus        42 ~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~  119 (401)
T PLN02409         42 ALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQ  119 (401)
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCC
Confidence            45677889999999863   3566678889999999899999999999998886543  23456777888887753    


Q ss_pred             -CCHHHHHHhhcC---CCeEEEEEeCCCCCccccccHHHHHHH--HHhcCCEEEEecCCCCCC-ccccccCCCcEEEECC
Q 013019          283 -ADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDL--CHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSA  355 (451)
Q Consensus       283 -~D~d~Le~ai~~---~~tklV~lesPsNPtG~v~DL~~Iael--A~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~  355 (451)
                       .|+++|++++++   +++++|++.++.||||.+.|+++|.++  |+++|+++|+|++++.+. ..+..++|+|+++.|.
T Consensus       120 ~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~  199 (401)
T PLN02409        120 GADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGS  199 (401)
T ss_pred             CCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcC
Confidence             368999999975   258999999999999999999999999  999999999999987542 2233457899999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHH
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRN  382 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~  382 (451)
                      +|+++++.  ..|+++.+++++++++.
T Consensus       200 ~K~l~~P~--G~G~l~~~~~~~~~~~~  224 (401)
T PLN02409        200 QKALSLPT--GLGIVCASPKALEASKT  224 (401)
T ss_pred             ccccCcCC--CcceeEECHHHHHHHhc
Confidence            99998764  48999999988887754

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.79  E-value=9.1e-18  Score=170.80  Aligned_cols=217  Identities=16%  Similarity=0.156  Sum_probs=151.8

Q ss_pred             hhHHHHHHHHHhhhCCC-cEEEeCC-HHHHHHHHHHHHcc----CC-CeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          210 PTTVVVEEKMSALEGAE-STVIMAS-GMSASTVMLLALVP----AG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae-~~vv~sS-G~aAi~~al~all~----~G-D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...++++++|++++|.+ +.+++++ +++++..++.++..    +| ++|++....|++....+. .++..|+++..++.
T Consensus        42 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~-~~~~~G~~v~~v~~  120 (353)
T TIGR03235        42 KAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIR-ALERNGFTVTYLPV  120 (353)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHH-HHHhcCCEEEEEcc
Confidence            34578999999999973 3455554 56899888887763    56 789998888887665543 34566888888763


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~S  356 (451)
                           .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.. .+..+.++|+++.|++
T Consensus       121 ~~~~~~d~~~l~~~l~~~-~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~  199 (353)
T TIGR03235       121 DESGRIDVDELADAIRPD-TLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGH  199 (353)
T ss_pred             CCCCcCCHHHHHHhCCCC-CEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehh
Confidence                 4789999999874 89999999999999999999999999999999999999765532 2223468999999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHH--HHHHh-------HhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQ--IRNLH-------HVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~--lr~~~-------~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~~Lae~  423 (451)
                      |+++.+|   .|+++.+++.+..  ++...       ....++.+....+.+..+++    .++.+.+++.+.+..+.+.
T Consensus       200 K~~gp~g---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~  276 (353)
T TIGR03235       200 KIYGPKG---IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDA  276 (353)
T ss_pred             hcCCCCc---eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9976554   6888777764322  11100       01112222222222222232    3345566777778888888


Q ss_pred             HHcCCCeEE
Q 013019          424 LEAHPKVLL  432 (451)
Q Consensus       424 L~~~p~V~~  432 (451)
                      |++ ++++.
T Consensus       277 l~~-~g~~~  284 (353)
T TIGR03235       277 LQT-LGVKL  284 (353)
T ss_pred             hcc-CCeEE
Confidence            876 67644

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.79  E-value=7.3e-18  Score=175.42  Aligned_cols=214  Identities=13%  Similarity=0.126  Sum_probs=136.6

Q ss_pred             CchhHHHHHHHHHhhh----C--C-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE---
Q 013019          208 GNPTTVVVEEKMSALE----G--A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT---  276 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~----g--a-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~---  276 (451)
                      +.+....|+++|++++    |  . ++.|++++|+ +++..+ ..++.+||+|++++|+|......+    ...|.+   
T Consensus        74 ~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l-~~~~~~gd~V~v~~P~Y~~~~~~~----~~~g~~~~~  148 (409)
T PRK07590         74 PEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNI-LDIFGPDNTIAVTDPVYPVYVDTN----VMAGRTGEA  148 (409)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHH----HHcCCcccc
Confidence            3445567888888764    2  2 3456666666 777764 567789999999999999866443    334443   


Q ss_pred             --------EEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----
Q 013019          277 --------ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  341 (451)
Q Consensus       277 --------v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----  341 (451)
                              +..++...-+.+...+...++++|++++|+||||.+++   +++|+++|+++|++||+||+|......    
T Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~  228 (409)
T PRK07590        149 NEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLP  228 (409)
T ss_pred             cccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCC
Confidence                    44444321111211222235899999999999999986   567888899999999999998753211    


Q ss_pred             ccc-cC----CCcEEEECCcccCCccccceeEEEEeCHHHHHHH------------HHHhHhhCCCccHHHHHHHHHh--
Q 013019          342 KAL-SL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI------------RNLHHVLGGALNPNAAYLIIRG--  402 (451)
Q Consensus       342 ~pl-~~----GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~l------------r~~~~~~G~~ls~~~a~l~lrg--  402 (451)
                      .++ .+    ...|++.|+||.++.+| ++.||+++++++++++            ..........++...+.++...  
T Consensus       229 ~~~~~~~~~~~~vi~~~SfSK~~~~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~  307 (409)
T PRK07590        229 HSIYEIEGARECAIEFRSFSKTAGFTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYS  307 (409)
T ss_pred             cchhhCCCcccceEEEecCccccCCcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhc
Confidence            111 11    12477899999998676 6789999999888732            1111111122344443333222  


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          403 ---MKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       403 ---L~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                         .+.+....+...++.+.+.+.|+++
T Consensus       308 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~  335 (409)
T PRK07590        308 PEGKAQIKELIDYYMENAKIIREGLESA  335 (409)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               2334444555667778888999876

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.79  E-value=8.1e-18  Score=173.25  Aligned_cols=210  Identities=23%  Similarity=0.282  Sum_probs=168.9

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+...+||++||+++|.+.+++|+||-.|+..++.+++++||.|+.+...|.+...-    .+..+.++..+...|+++|
T Consensus        83 ~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG----~rls~a~~~~f~HnD~~~L  158 (388)
T COG0156          83 SDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDG----IRLSRAEVRRFKHNDLDHL  158 (388)
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHH----HHhCCCcEEEecCCCHHHH
Confidence            477889999999999999999999999999999999999999999999888875533    3445677777888999999


Q ss_pred             HHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc---c--cCC-----CcEEEE
Q 013019          289 EAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---L--SLG-----ADLVLH  353 (451)
Q Consensus       289 e~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p---l--~~G-----aDiVv~  353 (451)
                      |+.+++.     +.++|++|+.-+..|.+.||++|.+++++||++++|||+++.++...-   +  ..|     .||++.
T Consensus       159 e~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~g  238 (388)
T COG0156         159 EALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVG  238 (388)
T ss_pred             HHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEE
Confidence            9999761     258999999999999999999999999999999999999887654321   0  112     379999


Q ss_pred             CCcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHc
Q 013019          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       354 S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      |++|.+|..    ||++.++..+++.++...+  .+...++|..+..+...++.   ...|.++..++...+.+.++.
T Consensus       239 TlsKAlGs~----Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~  312 (388)
T COG0156         239 TLGKALGSS----GGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKA  312 (388)
T ss_pred             Echhhhccc----CceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence            999999965    7999999999999887533  35667888876555544444   456677777777777654443

>PRK08354 putative aminotransferase; Provisional

Probab=99.79  E-value=1.1e-17  Score=167.92  Aligned_cols=163  Identities=19%  Similarity=0.239  Sum_probs=121.9

Q ss_pred             hHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHH
Q 013019          211 TTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  289 (451)
Q Consensus       211 t~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le  289 (451)
                      ....|++++++++|. + +++++|+ +++..++. ++.+||+|++++|+|.....    .++..|.++..+. .|++.++
T Consensus        41 ~~~~l~~~ia~~~~~-~-I~vt~G~~~al~~~~~-~~~~gd~vlv~~P~y~~~~~----~~~~~g~~~~~~~-~d~~~l~  112 (311)
T PRK08354         41 YYEWLEEEFSKLFGE-P-IVITAGITEALYLIGI-LALRDRKVIIPRHTYGEYER----VARFFAARIIKGP-NDPEKLE  112 (311)
T ss_pred             ChHHHHHHHHHHHCC-C-EEECCCHHHHHHHHHH-hhCCCCeEEEeCCCcHHHHH----HHHHcCCEEeecC-CCHHHHH
Confidence            356799999999984 4 5555555 88887764 44589999999999998653    4456788776553 5789999


Q ss_pred             HhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEEEECCcccCCccccc
Q 013019          290 AALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATKFIGGHNDV  365 (451)
Q Consensus       290 ~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S~SK~l~G~gdv  365 (451)
                      +++++  ++++++++|+||||.+.+   +++|.++|+++|+++|+||+|...... ........+++.|+||.++.+| +
T Consensus       113 ~~~~~--~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~G-l  189 (311)
T PRK08354        113 ELVER--NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPG-I  189 (311)
T ss_pred             HhhcC--CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCcc-c
Confidence            88863  678999999999999986   566777888999999999998764321 1122334689999999998776 5


Q ss_pred             eeEEEEeCHHHHHHHHHHhHhh
Q 013019          366 LAGSISGSGKLVTQIRNLHHVL  387 (451)
Q Consensus       366 ~gG~Iv~~~eli~~lr~~~~~~  387 (451)
                      +.||+++   +.+.++..+..+
T Consensus       190 RiG~~v~---~~~~l~~~~~~~  208 (311)
T PRK08354        190 RVGYVKG---FEEAFRSVRMPW  208 (311)
T ss_pred             eeeeeee---hHHHHHHcCCCc
Confidence            7889888   555666554433

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.79  E-value=1.7e-17  Score=172.39  Aligned_cols=212  Identities=17%  Similarity=0.146  Sum_probs=140.4

Q ss_pred             hHHHHHHHHHhhhC-------CCcEEE---eCCHHHHHHHHHH---HHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEE
Q 013019          211 TTVVVEEKMSALEG-------AESTVI---MASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  277 (451)
Q Consensus       211 t~~~Lee~LA~l~g-------ae~~vv---~sSG~aAi~~al~---all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v  277 (451)
                      ...+|++.+++++.       .++.++   +.+|++|+..+++   +++++||+|++++|+|.....    .++..|.++
T Consensus        73 G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~----~~~~~G~~~  148 (404)
T PTZ00376         73 GLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVN----IFKSAGLNV  148 (404)
T ss_pred             CCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHcCCce
Confidence            35578888887642       122344   4445577766653   678999999999999998664    345567766


Q ss_pred             EEeCC-------CCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---
Q 013019          278 TVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---  342 (451)
Q Consensus       278 ~~vd~-------~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---  342 (451)
                      ..++.       .|++.++++++.  .+++++++++|+||||.+++   +++|+++|++||+++|+|++|.......   
T Consensus       149 ~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~  228 (404)
T PTZ00376        149 KEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDK  228 (404)
T ss_pred             eeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHH
Confidence            66543       268899888852  23678888999999999986   6678888999999999999987543211   


Q ss_pred             ---cc----cCC-CcEEEECCcccCCccccceeEEE---EeCHHHHHHHH----HHhHhhCCCccHHHHHHHHHhhHH--
Q 013019          343 ---AL----SLG-ADLVLHSATKFIGGHNDVLAGSI---SGSGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMKT--  405 (451)
Q Consensus       343 ---pl----~~G-aDiVv~S~SK~l~G~gdv~gG~I---v~~~eli~~lr----~~~~~~G~~ls~~~a~l~lrgL~t--  405 (451)
                         ++    ..+ .-+++.|+||.++.+| .+.||+   ++++++++++.    ........+.+...+..+...++.  
T Consensus       229 ~~~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  307 (404)
T PTZ00376        229 DAYAIRLFAERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPE  307 (404)
T ss_pred             HHHHHHHHHhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHH
Confidence               11    111 3488999999999776 567887   57877665543    222222233344544444433321  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHcC
Q 013019          406 --------LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       406 --------l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                              +....++..++...+.+.|+++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  337 (404)
T PTZ00376        308 LRAEWLSELKEMSGRIQNMRQLLYDELKAL  337 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    2222345567778888888876

>PLN02231 alanine transaminase

Probab=99.79  E-value=3.6e-17  Score=176.04  Aligned_cols=215  Identities=16%  Similarity=0.190  Sum_probs=143.2

Q ss_pred             HHHHHHHHHhhh----CC---CcEEEeCCH-HHHHHHHHHHHcc-CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          212 TVVVEEKMSALE----GA---ESTVIMASG-MSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga---e~~vv~sSG-~aAi~~al~all~-~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      ...|++.|++++    |.   .+.|++++| ++|+..++.+++. +||.|+++.|.|......+    ...|.++..++ 
T Consensus       170 ~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~----~~~g~~~v~~~l  245 (534)
T PLN02231        170 IKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASI----ALHGGTLVPYYL  245 (534)
T ss_pred             cHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHH----HHcCCEEEEEec
Confidence            455666666654    42   234555555 5999999999984 7999999999998765433    44565555442 


Q ss_pred             ------CCCHHHHHHhhcCC-----CeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc--c---
Q 013019          282 ------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--K---  342 (451)
Q Consensus       282 ------~~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~--~---  342 (451)
                            ..|+++|++++++.     ++|+|++.+|+||||.+++   +++|+++|+++|++||+||+|......  .   
T Consensus       246 ~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~  325 (534)
T PLN02231        246 DEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFH  325 (534)
T ss_pred             CcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcc
Confidence                  24789999988641     4899999999999999985   678899999999999999998754321  1   


Q ss_pred             cc-c----CC------CcEEEECCcccC-CccccceeEEEEe---CHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----
Q 013019          343 AL-S----LG------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----  403 (451)
Q Consensus       343 pl-~----~G------aDiVv~S~SK~l-~G~gdv~gG~Iv~---~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----  403 (451)
                      ++ .    .|      .-++++|+||.+ +.+| .++||+++   ++++++++.+.... ..+.+.....++...+    
T Consensus       326 s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k~~~~-~~~s~~~~Q~~~~~~l~~p~  403 (534)
T PLN02231        326 SFKKVARSMGYGEKDISLVSFQSVSKGYYGECG-KRGGYMEVTGFTSDVREQIYKVASV-NLCSNISGQILASLVMSPPK  403 (534)
T ss_pred             cHHHHHhhhccccCCceEEEEeccCcccccCCc-cceEEEEEecCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHhCCCC
Confidence            11 0    11      136788999976 4344 57898875   67888888766542 2222222222222222    


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          404 ----------KTLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       404 ----------~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                                +......+...++++.+.+.|++++++..
T Consensus       404 ~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~  442 (534)
T PLN02231        404 PGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTC  442 (534)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence                      11112245667788889999998877653

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.78  E-value=1.9e-17  Score=169.77  Aligned_cols=221  Identities=23%  Similarity=0.268  Sum_probs=165.3

Q ss_pred             CchhHHHHHHHHHhhhCCCc---EEEeCCHHHHHHHHHHHH---ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          208 GNPTTVVVEEKMSALEGAES---TVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~---~vv~sSG~aAi~~al~al---l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      .....+++++.+++++|++.   .+++++++.++..++.++   +++||+|++....|++....+....++.|+++++++
T Consensus        41 ~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~  120 (371)
T PF00266_consen   41 FAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIP  120 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence            34566788999999999744   455667778999999998   789999999999999988777777778899988775


Q ss_pred             -----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECC
Q 013019          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSA  355 (451)
Q Consensus       282 -----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~  355 (451)
                           ..|++++++++++ ++++|++....|.+|...|+++|.++||++|+++++|.+++.+. ..+.-++|+|+++.|.
T Consensus       121 ~~~~~~~~~~~~~~~l~~-~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~  199 (371)
T PF00266_consen  121 ADPGGSLDLEDLEEALNP-DTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSS  199 (371)
T ss_dssp             EGTTSSCSHHHHHHHHHT-TESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEES
T ss_pred             ccccchhhhhhhhhhhcc-ccceEEeecccccccEEeeeceehhhhhccCCceeEechhccccccccccccccceeeecc
Confidence                 2478999999986 49999999999999999999999999999999999999987653 2344467899999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHhH---------------------hhCCCccHHHHHHHHHhhHHH-----HHH
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKTL-----HLR  409 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~---------------------~~G~~ls~~~a~l~lrgL~tl-----~~R  409 (451)
                      +|+++++|   .|+++.+++++++++....                     ..+++.+....+.+..+++.+     ...
T Consensus       200 ~Kl~gp~G---~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i  276 (371)
T PF00266_consen  200 HKLGGPPG---LGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERI  276 (371)
T ss_dssp             TSTTSSST---EEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCc---hhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccc
Confidence            99444444   6999999988888742211                     012233333333333333333     222


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEE
Q 013019          410 VQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       410 l~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      .++..+.++.+.+.|++.|.+..
T Consensus       277 ~~~~~~l~~~~~~~l~~~~~~~~  299 (371)
T PF00266_consen  277 RERIRELAEYLREALEELPGIEV  299 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEEE
T ss_pred             hhhhhhHHHHHHhhhhcCCceeE
Confidence            45566778888889999988754

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.78  E-value=8.1e-18  Score=150.70  Aligned_cols=156  Identities=23%  Similarity=0.271  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCC-----
Q 013019          212 TVVVEEKMSALE--GAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD-----  284 (451)
Q Consensus       212 ~~~Lee~LA~l~--gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D-----  284 (451)
                      .+++++.+++++  +.+.++++++|++|+..++.++.++|++|++.++.|.+...   ..+...|.++..++..+     
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~   78 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYW---VAAELAGAKPVPVPVDDAGYGG   78 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehh---hHHHhcCCEEEEeccCCCCccc
Confidence            467999999999  78889999999999999999998889999999999998763   23456688887776431     


Q ss_pred             H--HHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc----ccccCCCcEEEECCccc
Q 013019          285 M--EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSLGADLVLHSATKF  358 (451)
Q Consensus       285 ~--d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~----~pl~~GaDiVv~S~SK~  358 (451)
                      .  +.+++.....+++++++++++|++|...|+++|.++|+++|+++|+|+++..+...    .+...++|+++.|++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~  158 (170)
T cd01494          79 LDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKN  158 (170)
T ss_pred             hhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccc
Confidence            1  24544443345899999999999999999999999999999999999998765433    34556899999999999


Q ss_pred             CCccccceeEEEEeC
Q 013019          359 IGGHNDVLAGSISGS  373 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~  373 (451)
                      +++++   +|+++.+
T Consensus       159 ~~~~~---~G~l~~~  170 (170)
T cd01494         159 LGGEG---GGVVIVK  170 (170)
T ss_pred             cCCCc---eEEEEeC
Confidence            99864   8888764

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.78  E-value=2.8e-17  Score=170.30  Aligned_cols=216  Identities=19%  Similarity=0.213  Sum_probs=159.0

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc---------CC-CeEEEcCCCCcch-HHHHHH-------
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AG-GHIVTTTDCYRKT-RIFIET-------  268 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~---------~G-D~VIv~~~~Y~~t-~~~l~~-------  268 (451)
                      +.++...+|+++|+++.+.+.+++++||++|+..++..+..         +| ++||+.+..|.+. ...+..       
T Consensus        80 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~  159 (401)
T PRK00854         80 FRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDAR  159 (401)
T ss_pred             cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcccc
Confidence            45678889999999999988999999999999999987753         23 5777777666553 332210       


Q ss_pred             -hhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCccc-
Q 013019          269 -VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQK-  342 (451)
Q Consensus       269 -~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~~~-  342 (451)
                       .+......+.+++..|+++|++++.+ ++++|++|+|+||+|.+.+    +++|.++|++||+++|+||++. ++... 
T Consensus       160 ~~~~~~~~~~~~~~~~d~~~le~~i~~-~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g  237 (401)
T PRK00854        160 GGFGPFTPGFRVVPFGDAEALEAAITP-NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTG  237 (401)
T ss_pred             ccCCCCCCCeEEeCCCCHHHHHHHhCC-CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCc
Confidence             01122234566777899999999987 4999999999999999986    9999999999999999999985 22211 


Q ss_pred             ------cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHH
Q 013019          343 ------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQN  414 (451)
Q Consensus       343 ------pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~  414 (451)
                            ......|+++.  +|++++.. ..+|++++++++++.++..........++..++.++..|+.+..  ..++..
T Consensus       238 ~~~~~~~~g~~~D~~~~--~K~l~gg~-~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~  314 (401)
T PRK00854        238 KLLAEEHEGIEADVTLI--GKALSGGF-YPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAA  314 (401)
T ss_pred             hHhHHhhcCCCCCEEEe--cccccCCc-cCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence                  12234688875  59998753 45789999999888776432222223477888888888877654  456666


Q ss_pred             HHHHHHHHHHHcC
Q 013019          415 STALRMAEILEAH  427 (451)
Q Consensus       415 ~nA~~Lae~L~~~  427 (451)
                      ++...+.+.|++.
T Consensus       315 ~~~~~l~~~L~~~  327 (401)
T PRK00854        315 EMGAYFLEGLRSI  327 (401)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777888888765

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.78  E-value=2.1e-17  Score=171.63  Aligned_cols=214  Identities=12%  Similarity=0.117  Sum_probs=136.6

Q ss_pred             CchhHHHHHHHHHhhh---CC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc-------
Q 013019          208 GNPTTVVVEEKMSALE---GA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI-------  275 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~---ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi-------  275 (451)
                      +.+....|++++++++   +. .+.|++++|+ +++..+ ..++.+||+|++++|+|......+    +..|+       
T Consensus        73 p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~----~~~g~~~~~~~~  147 (402)
T TIGR03542        73 PEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL-QSLFGSDNTVAVQDPVYPAYVDSN----VMAGRAGVLDDD  147 (402)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHH----HHcCCccccccc
Confidence            3455677999999865   32 3456666666 787764 567789999999999999865433    44555       


Q ss_pred             ----EEEEeCCCCHHHHHHhhc-CCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----cc
Q 013019          276 ----TATVIDPADMEGLEAALN-NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA  343 (451)
Q Consensus       276 ----~v~~vd~~D~d~Le~ai~-~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~p  343 (451)
                          ++..++....+.+...+. ..++++|++++|+||||.+++   +++|.++|+++|++||+|++|......    .+
T Consensus       148 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~  227 (402)
T TIGR03542       148 GRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHS  227 (402)
T ss_pred             cccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcc
Confidence                666554321111111111 124899999999999999997   788999999999999999998753211    11


Q ss_pred             c---cC--CCcEEEECCcccCCccccceeEEEEeCHHHH--------HHHHHHhHhhCCCccHHHHHHHHHhh-----HH
Q 013019          344 L---SL--GADLVLHSATKFIGGHNDVLAGSISGSGKLV--------TQIRNLHHVLGGALNPNAAYLIIRGM-----KT  405 (451)
Q Consensus       344 l---~~--GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli--------~~lr~~~~~~G~~ls~~~a~l~lrgL-----~t  405 (451)
                      +   +.  ...+++.|+||.++.+| ++.||++++++++        +.+...........+......+...+     +.
T Consensus       228 ~~~~~~~~~~vi~~~SfSK~~g~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~  306 (402)
T TIGR03542       228 IFEIPGAKECAIEFRSFSKTAGFTG-VRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQP  306 (402)
T ss_pred             hhhCCCCcccEEEEecCccccCCCC-cceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhH
Confidence            1   11  12477899999998777 6789999998876        22211111112234444333322222     23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Q 013019          406 LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       406 l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +....+...++.+.+.+.|+++
T Consensus       307 ~~~~~~~~~~~~~~~~~~L~~~  328 (402)
T TIGR03542       307 ILEAISYYMENARILRKALEAA  328 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3333455566777788888875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.78  E-value=3.1e-17  Score=169.15  Aligned_cols=169  Identities=19%  Similarity=0.246  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHH-HHHHHHHHHHccC--CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGM-SASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~-aAi~~al~all~~--GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      +.++++++++++++|.+  ..+++++|+ ++...++.+++.+  ||+|+++++.|+.+...+.......|.++.+++.  
T Consensus        64 ~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~  143 (398)
T cd00613          64 QALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE  143 (398)
T ss_pred             HHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC
Confidence            34678999999999875  666677666 4555555566666  9999999999999876665444455677777654  


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCccccccH-HHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCcc
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV-KLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATK  357 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL-~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~SK  357 (451)
                         .|+++++++++++ +++|++++|+ ++|.+.|+ ++|.++|+++|+++|+|++++.+ ...++..+++|+++.|++|
T Consensus       144 ~~~~d~~~l~~~i~~~-t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K  221 (398)
T cd00613         144 GGTVDLEALKEEVSEE-VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQK  221 (398)
T ss_pred             CCCcCHHHHHHhcCCC-eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccc
Confidence               2689999999874 9999999985 89999885 99999999999999999986543 3344556789999999999


Q ss_pred             cCCcc--ccceeEEEEeCHHHHHHH
Q 013019          358 FIGGH--NDVLAGSISGSGKLVTQI  380 (451)
Q Consensus       358 ~l~G~--gdv~gG~Iv~~~eli~~l  380 (451)
                      ++.+.  |.-++|+++.++++++.+
T Consensus       222 ~~~p~g~Ggp~~g~l~~~~~~~~~~  246 (398)
T cd00613         222 TGVPHGGGGPGAGFFAVKKELVRFL  246 (398)
T ss_pred             cCCCCCCCCCceeEEEEhhhhHhhC
Confidence            98321  113478999988777654

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.78  E-value=4.1e-17  Score=174.29  Aligned_cols=209  Identities=13%  Similarity=0.226  Sum_probs=136.8

Q ss_pred             HHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          213 VVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       213 ~~Lee~LA~l~g--------a-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ..|++.||++++        . ++.|++++|. +|+..++.+++++||.|++++|.|++....+.   ...|+++..++.
T Consensus        97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~---~~~G~~vv~v~~  173 (496)
T PLN02376         97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLR---WRTGVEIIPVPC  173 (496)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHH---hhCCCEEEEEeC
Confidence            446666666543        1 2445555555 99999999999999999999999998654332   135777666643


Q ss_pred             -------CCHHHHHHhhc-----CCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----cc
Q 013019          283 -------ADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA  343 (451)
Q Consensus       283 -------~D~d~Le~ai~-----~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~p  343 (451)
                             .|+++++++++     ..++|+|++++|+||||.+++   +++|+++|+++|++||+||+|+.....    .+
T Consensus       174 ~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~s  253 (496)
T PLN02376        174 SSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVS  253 (496)
T ss_pred             CCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCccc
Confidence                   35777765532     125899999999999999997   567888899999999999998753211    11


Q ss_pred             ---c----cC---CCc--EEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---HH
Q 013019          344 ---L----SL---GAD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LH  407 (451)
Q Consensus       344 ---l----~~---GaD--iVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---l~  407 (451)
                         +    +.   ..+  +++.|+||.++.+| .+.|+++++ +.+.+.++... ..+ .++...++++...|+.   +.
T Consensus       254 i~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG-lRvG~li~~~~~l~~~~~~~~-~~~-~vs~~~Q~a~~~~L~d~~~~~  330 (496)
T PLN02376        254 VAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG-FRVGIVYSFNDSVVSCARKMS-SFG-LVSSQTQLMLASMLSDDQFVD  330 (496)
T ss_pred             HHHhhccccccccCCCeEEEEEeccccCCCCc-ceEEEEEECCHHHHHHHHHHh-hcC-CCCHHHHHHHHHHhCChhHHH
Confidence               1    00   112  45799999998776 678999985 55555554433 233 2445554444333321   11


Q ss_pred             ----HHHHHHHHHHHHHHHHHHcC
Q 013019          408 ----LRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       408 ----~Rl~~~~~nA~~Lae~L~~~  427 (451)
                          ...++..++.+.+.+.|+++
T Consensus       331 ~~l~~~r~~l~~r~~~l~~~L~~~  354 (496)
T PLN02376        331 NFLMESSRRLGIRHKVFTTGIKKA  354 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Confidence                11334445566677778764

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.78  E-value=1.4e-18  Score=173.40  Aligned_cols=239  Identities=23%  Similarity=0.298  Sum_probs=170.5

Q ss_pred             CCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHH
Q 013019          186 KKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF  265 (451)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~  265 (451)
                      ++.+++........+...|+  .+|+..+|++++++++|.+.++++.||+.|+.+++.+++++++.||+.++.|.....-
T Consensus         7 ~~~~m~~a~~~a~~gd~~Yg--~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~   84 (290)
T PF01212_consen    7 PTPAMLEAMAAANVGDDAYG--EDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDET   84 (290)
T ss_dssp             S-HHEEHHHHHTTSB-CCTT--SSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSST
T ss_pred             CCHHHHHHHHccccCCcccC--CChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeecc
Confidence            44444444433333334566  6899999999999999999999999999999999999999999999988765432211


Q ss_pred             HHHhhhcCCcEEEEeCC-----CCHHHHHHhhcC-----CCeEEEEEeCCCCCc-cccc---cHHHHHHHHHhcCCEEEE
Q 013019          266 IETVLPKMGITATVIDP-----ADMEGLEAALNN-----NNVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCI  331 (451)
Q Consensus       266 l~~~l~~~Gi~v~~vd~-----~D~d~Le~ai~~-----~~tklV~lesPsNPt-G~v~---DL~~IaelA~~~g~~lVV  331 (451)
                      - ......|.++..+..     .++++|++++++     .++++|++|+|+|.. |.++   +|++|.++||+||+.|+.
T Consensus        85 g-a~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhm  163 (290)
T PF01212_consen   85 G-AIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHM  163 (290)
T ss_dssp             T-HHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEE
T ss_pred             c-hhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEE
Confidence            0 111235776665532     478999998865     358999999999864 6666   578899999999999999


Q ss_pred             ecCCC---C---CCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCcc---HHHH---H--
Q 013019          332 DGTFA---T---PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN---PNAA---Y--  397 (451)
Q Consensus       332 D~tfa---~---~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls---~~~a---~--  397 (451)
                      |.+-.   .   ....+.+..++|++..|++|.++.+.   +++++++++++++.+.++..+|+.+.   ...+   |  
T Consensus       164 DGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~  240 (290)
T PF01212_consen  164 DGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQF  240 (290)
T ss_dssp             EETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHH
T ss_pred             ehhhHHHhhhcccccHHHHhhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhH
Confidence            99831   1   12223334689999999999999875   89999999988887777777765442   2222   1  


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          398 LIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       398 l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      ..+++++....++.+..+++++|++.|++.+.+
T Consensus       241 ~~l~~l~~~~~~~~~~~~~A~~La~~l~~~~~~  273 (290)
T PF01212_consen  241 AALRALELWLERARHANAMAKRLAAGLEALGGV  273 (290)
T ss_dssp             HHHCHEECSHHHHHCHHHHHHCHHHCHHEECEE
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            233444544567778889999999999998765

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.78  E-value=1.8e-17  Score=172.57  Aligned_cols=193  Identities=16%  Similarity=0.199  Sum_probs=131.3

Q ss_pred             CCCchh-HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHcc-----CCCeEEE-cCCCCcchHHHHHH--
Q 013019          206 RYGNPT-TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALVP-----AGGHIVT-TTDCYRKTRIFIET--  268 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~----ga---e~~vv~sSG~-aAi~~al~all~-----~GD~VIv-~~~~Y~~t~~~l~~--  268 (451)
                      +|+++. ...|+++|++++    |.   ++.|++++|+ +++..++.++++     +||.|++ .+|+|.+.......  
T Consensus        69 ~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~  148 (416)
T PRK09440         69 NYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEED  148 (416)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccC
Confidence            344443 356777777665    32   3456666666 899999998885     6899999 69999875542210  


Q ss_pred             hhhcCCcEEEEeC------CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCC
Q 013019          269 VLPKMGITATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL  339 (451)
Q Consensus       269 ~l~~~Gi~v~~vd------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~  339 (451)
                      .+...+..+..++      ..|+++|+  +.+ ++++|++++|+||||.+++   +++|+++|+++|++||+|++|+.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~  225 (416)
T PRK09440        149 LFVSYRPNIELLPEGQFKYHVDFEHLH--IDE-DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPF  225 (416)
T ss_pred             ceeecccccccccccccccCCCHHHcc--cCC-CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccC
Confidence            1111222222121      24677776  344 4899999999999999997   6778888999999999999997532


Q ss_pred             cc----c--cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh
Q 013019          340 NQ----K--ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM  403 (451)
Q Consensus       340 ~~----~--pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL  403 (451)
                      ..    .  +...+.-|++.|+||+ +.+| ++.||+++++++++++...+.......+.+...++...+
T Consensus       226 ~~~~~~~~~~~~~~~vI~~~SfSK~-~~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l  293 (416)
T PRK09440        226 PGIIFSEATPLWNPNIILCMSLSKL-GLPG-VRCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMI  293 (416)
T ss_pred             CCcchhhcCccccCCeEEEeccccc-CCCc-ceEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence            11    1  1112334888999996 6555 789999999999999988776665556666655555444

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.78  E-value=2.5e-17  Score=172.68  Aligned_cols=214  Identities=18%  Similarity=0.203  Sum_probs=154.5

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      |+  +.+...+||+.+++++|.++++++.+|++|+..++++++++||.| ++++.|..+...+    ...|....+++. 
T Consensus        49 Y~--~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i----~~~Ga~pv~v~i~  121 (431)
T cd00617          49 YA--GSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHI----EANGAVPVDLVID  121 (431)
T ss_pred             cC--CCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHH----HhCCCEeEEEecc
Confidence            54  567789999999999999999999999999999999999999987 5777777765433    234544444322 


Q ss_pred             --------------CCHHHHHHhhcCC---CeEEEEEeCCCCCc-ccccc---HHHHHHHHHhcCCEEEEecCCCC----
Q 013019          283 --------------ADMEGLEAALNNN---NVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT----  337 (451)
Q Consensus       283 --------------~D~d~Le~ai~~~---~tklV~lesPsNPt-G~v~D---L~~IaelA~~~g~~lVVD~tfa~----  337 (451)
                                    .|+++|+++|+++   ++++|++++|+||+ |.+.+   +++|.++|++||++||.|++...    
T Consensus       122 ~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~  201 (431)
T cd00617         122 EAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAY  201 (431)
T ss_pred             cccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhh
Confidence                          4799999999853   38899999999998 88875   56889999999999999999321    


Q ss_pred             -------CCccccc-c------CCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHh-----hCCCccHHHHH
Q 013019          338 -------PLNQKAL-S------LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----LGGALNPNAAY  397 (451)
Q Consensus       338 -------~~~~~pl-~------~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~-----~G~~ls~~~a~  397 (451)
                             ++...++ +      -.+|.+..|+.|...++   .||++++++ +++++++.....     ..+.++..+..
T Consensus       202 ~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~  278 (431)
T cd00617         202 FIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDME  278 (431)
T ss_pred             hhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHHHhccccCCccccccccHHHHH
Confidence                   1222221 1      14788888888887766   489999986 588888754311     12234444433


Q ss_pred             HHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 013019          398 LIIRGMKTL--HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       398 l~lrgL~tl--~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .+..+|+..  ...+++..++++.|++.|++.
T Consensus       279 A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~  310 (431)
T cd00617         279 ALAQGLREAVEEDYLRHRVEQVRYLGDRLDEA  310 (431)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            333355432  344566666778899999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.78  E-value=4.1e-17  Score=166.76  Aligned_cols=213  Identities=17%  Similarity=0.200  Sum_probs=153.8

Q ss_pred             hHHHHHHHHHhhhCCC---c-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          211 TTVVVEEKMSALEGAE---S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae---~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ..+++++.+++++|.+   . .+++++|+.++..++.++..+||+|++..+.|.+..  +...++..|+++..++.    
T Consensus        38 ~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~  115 (368)
T PRK13479         38 LTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGAR--IAQIAEYLGIAHVVLDTGEDE  115 (368)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHH--HHHHHHHcCCcEEEEECCCCC
Confidence            5678999999999973   3 346678999999999999999999999877766543  23456677888777653    


Q ss_pred             -CCHHHHHHhhcCC-CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccC
Q 013019          283 -ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 -~D~d~Le~ai~~~-~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l  359 (451)
                       .|+++++++++++ ++++|++++|+||||...|+++|.++|+++|+++|+|+++..+. ..+..++++|+++.|++|++
T Consensus       116 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l  195 (368)
T PRK13479        116 PPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCI  195 (368)
T ss_pred             CCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCcccc
Confidence             4689999988642 46789999999999999999999999999999999998754332 12223468999999999988


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHhHhh--------------C---CCccHHHHHHHHHhhHH------HHHHHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLHHVL--------------G---GALNPNAAYLIIRGMKT------LHLRVQQQNST  416 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~~~~--------------G---~~ls~~~a~l~lrgL~t------l~~Rl~~~~~n  416 (451)
                      .|+..  .|+++.+++++++++.....+              +   .+.+....+.+..+++.      +..+.+++.+.
T Consensus       196 ~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~  273 (368)
T PRK13479        196 EGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANN  273 (368)
T ss_pred             ccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence            65531  599999998887765422110              0   12222222222222222      34556677778


Q ss_pred             HHHHHHHHHcC
Q 013019          417 ALRMAEILEAH  427 (451)
Q Consensus       417 A~~Lae~L~~~  427 (451)
                      ++.+.+.|+++
T Consensus       274 ~~~l~~~L~~~  284 (368)
T PRK13479        274 QRTLVAGMRAL  284 (368)
T ss_pred             HHHHHHHHHHc
Confidence            88888888876

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.77  E-value=3e-17  Score=173.25  Aligned_cols=210  Identities=15%  Similarity=0.199  Sum_probs=142.8

Q ss_pred             HHHHHHHHHhhhC--------C-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          212 TVVVEEKMSALEG--------A-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       212 ~~~Lee~LA~l~g--------a-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ...|++.+|++++        . ++.|++++|. +|+..++.+++.+||.|+++.|.|++....+.   .+.|+++..++
T Consensus        97 ~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~---~~~g~~vv~v~  173 (447)
T PLN02607         97 LKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLR---WRTGVKIVPIH  173 (447)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH---hcCCcEEEEEe
Confidence            3457777776653        1 2345556655 89999999999999999999999998654332   13566665553


Q ss_pred             C-------CCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----
Q 013019          282 P-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----  341 (451)
                      .       .|++++++++++     .++|+|++++|+||||.+++   +++|.++|+++|+++|+||+|+.....     
T Consensus       174 ~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~  253 (447)
T PLN02607        174 CDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFV  253 (447)
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcc
Confidence            2       368889888763     25899999999999999987   778889999999999999998753211     


Q ss_pred             cccc----C------CCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH------
Q 013019          342 KALS----L------GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------  404 (451)
Q Consensus       342 ~pl~----~------GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~------  404 (451)
                      ..+.    .      ..-+++.|+||.++.+| .+.|++++ ++++++.++......  .++.....++...|+      
T Consensus       254 S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G-lRvG~ivs~n~~l~~~~~~~~~~~--~~s~~~q~~~~~~L~d~~~~~  330 (447)
T PLN02607        254 SVAEIVEARGYKGVAERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTARRMSSFT--LVSSQTQHLLASMLSDEEFTE  330 (447)
T ss_pred             cHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc-ceEEEEEEcCHHHHHHHHHHhhcC--CCCHHHHHHHHHHhCCchhHH
Confidence            1110    1      12378899999998777 67899998 667777766553322  223333333332222      


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          405 -TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       405 -tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                       .+....++..++.+.+.+.|+++
T Consensus       331 ~~l~~~r~~l~~~~~~~~~~L~~~  354 (447)
T PLN02607        331 NYIRTNRERLRKRYEMIVQGLRRA  354 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC
Confidence             22333445566677788888875

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.77  E-value=2.3e-17  Score=169.45  Aligned_cols=215  Identities=19%  Similarity=0.197  Sum_probs=149.1

Q ss_pred             hHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc---cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          211 TTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all---~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      ..+++++++++++|.+  +.+++++|++++..++.+++   ++||+|++....|++....+. .+...|+++..++.   
T Consensus        43 ~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~~  121 (379)
T TIGR03402        43 AVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQ-HLEKQGYKVTYLPVDEE  121 (379)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHH-HHHHcCCEEEEEccCCC
Confidence            3567889999999963  45566677899998887764   457899999999987655443 34557888888753   


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcccC
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l  359 (451)
                        .|+++++++++++ +++|++++++||||.+.|+++|.++|+++|+++++|++++.+.. .+..++|+|+++.|.+|++
T Consensus       122 g~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~  200 (379)
T TIGR03402       122 GRLDLEELRAAITDD-TALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLH  200 (379)
T ss_pred             CcCCHHHHHHhcCCC-cEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcC
Confidence              4789999999874 99999999999999999999999999999999999999876532 2333578999999999966


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHh-------HhhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHc-C
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAEILEA-H  427 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~-------~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~Lae~L~~-~  427 (451)
                      +++|   .|+++.+++..  ++...       ....++.+....+.+..+++.    +....++..+....+.+.|++ .
T Consensus       201 gp~G---~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~  275 (379)
T TIGR03402       201 GPKG---VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARI  275 (379)
T ss_pred             CCCc---eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhC
Confidence            5555   67777665431  11100       001122222222222223332    333334555666777777775 7


Q ss_pred             CCeEE
Q 013019          428 PKVLL  432 (451)
Q Consensus       428 p~V~~  432 (451)
                      |+++.
T Consensus       276 ~~~~~  280 (379)
T TIGR03402       276 PDARL  280 (379)
T ss_pred             CCEEE
Confidence            77644

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.77  E-value=8.8e-17  Score=170.21  Aligned_cols=210  Identities=18%  Similarity=0.218  Sum_probs=149.7

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC----CC
Q 013019          212 TVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----PA  283 (451)
Q Consensus       212 ~~~Lee~LA~l~ga---e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd----~~  283 (451)
                      ++.+.+.+....|.   ++.|++|+|+ +|+.+++..+++|||.|++.+|+|.+....+    +..|+++..++    ..
T Consensus       138 R~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~----~~~g~~~~~vp~d~~G~  213 (459)
T COG1167         138 REAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQAL----EALGARVIPVPVDEDGI  213 (459)
T ss_pred             HHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHH----HHcCCcEEecCCCCCCC
Confidence            33444444433342   3456666666 9999999999999999999999999977554    45566666554    45


Q ss_pred             CHHHHHHhhcCCCeEEEEEeCCC--CCccccccH---HHHHHHHHhcCCEEEEecCCCCCCcc-c------cc-cCCCcE
Q 013019          284 DMEGLEAALNNNNVSLFFTESPT--NPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ-K------AL-SLGADL  350 (451)
Q Consensus       284 D~d~Le~ai~~~~tklV~lesPs--NPtG~v~DL---~~IaelA~~~g~~lVVD~tfa~~~~~-~------pl-~~GaDi  350 (451)
                      |+|+|+++++..++|++|+ +|+  ||||..+++   ++|.++|++||+++|.|+.|+..... .      .+ ..+-.|
T Consensus       214 ~~e~le~~~~~~~~k~~y~-~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rVi  292 (459)
T COG1167         214 DPEALEEALAQWKPKAVYV-TPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVI  292 (459)
T ss_pred             CHHHHHHHHhhcCCcEEEE-CCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEE
Confidence            8999999998766899988 554  999999985   57999999999999999998653211 1      11 225669


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHH----Hh-hHHHHHHH-HHHHHHHHHHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII----RG-MKTLHLRV-QQQNSTALRMAEIL  424 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~l----rg-L~tl~~Rl-~~~~~nA~~Lae~L  424 (451)
                      ++.||||.+...  ++.||+++++++++++...+.......+.+....+.    .| ....-.|+ +...+....+.+.|
T Consensus       293 y~gSFSK~l~Pg--lRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L  370 (459)
T COG1167         293 YLGSFSKTLAPG--LRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEAL  370 (459)
T ss_pred             EEeeehhhcccc--cceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999854  589999999999999988877766666665532222    32 22222333 33445566677788


Q ss_pred             HcCC
Q 013019          425 EAHP  428 (451)
Q Consensus       425 ~~~p  428 (451)
                      +++.
T Consensus       371 ~~~~  374 (459)
T COG1167         371 AEYL  374 (459)
T ss_pred             HHhC
Confidence            8763

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.77  E-value=7e-17  Score=164.90  Aligned_cols=213  Identities=18%  Similarity=0.196  Sum_probs=149.9

Q ss_pred             hHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          211 TTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae----~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ..+.+++.+++++|++    ..++++||++++..++.+++.+||++++..+.+.+..  +...++..|+++..++.    
T Consensus        36 ~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~~  113 (363)
T TIGR02326        36 VVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEVE  113 (363)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCC
Confidence            4567899999999974    2455678889999999999989988766555444322  23445677888777653    


Q ss_pred             -CCHHHHHHhhcCC-CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccC
Q 013019          283 -ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 -~D~d~Le~ai~~~-~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l  359 (451)
                       .|+++++++++++ ++++|.+.++.||||...|+++|.++||++|+++++|++++.+. ..+..++++|+++.|++|++
T Consensus       114 ~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l  193 (363)
T TIGR02326       114 PPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCI  193 (363)
T ss_pred             CCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCcccc
Confidence             3789999998753 36788888899999999999999999999999999999875432 22333568999999999998


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHhH------------h---hC---CCccHHHHHHHHHhhHH------HHHHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLHH------------V---LG---GALNPNAAYLIIRGMKT------LHLRVQQQNS  415 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~~------------~---~G---~~ls~~~a~l~lrgL~t------l~~Rl~~~~~  415 (451)
                      +|+.  ..|+++.+++.++++.....            .   .|   ...+......+..+++.      +..+.+++.+
T Consensus       194 ~~p~--G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~  271 (363)
T TIGR02326       194 QGVP--GFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQ  271 (363)
T ss_pred             ccCC--cceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            7664  25999999887776532100            0   01   12222332222223322      3345667778


Q ss_pred             HHHHHHHHHHcC
Q 013019          416 TALRMAEILEAH  427 (451)
Q Consensus       416 nA~~Lae~L~~~  427 (451)
                      ++..+.+.|+++
T Consensus       272 ~~~~l~~~L~~~  283 (363)
T TIGR02326       272 NQKTLVAGMRAL  283 (363)
T ss_pred             HHHHHHHHHHHc
Confidence            888888888776

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.76  E-value=4.4e-17  Score=171.34  Aligned_cols=214  Identities=21%  Similarity=0.277  Sum_probs=153.9

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc-cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC----CH
Q 013019          213 VVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----DM  285 (451)
Q Consensus       213 ~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all-~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~----D~  285 (451)
                      .++++++++++|.+  ..+++++|++++..+++++. .+||+|+++++.|+.+...+.......|+++..++..    |+
T Consensus       115 ~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~  194 (447)
T PRK00451        115 FEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDL  194 (447)
T ss_pred             HHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCH
Confidence            34557789999974  34556677788888888874 7899999999999987777665566678888887653    78


Q ss_pred             HHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEE--ecCCCCCCccccccCCCcEEEECCccc-----
Q 013019          286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI--DGTFATPLNQKALSLGADLVLHSATKF-----  358 (451)
Q Consensus       286 d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVV--D~tfa~~~~~~pl~~GaDiVv~S~SK~-----  358 (451)
                      ++|+++++++ +++|++++| |+||.+.|+++|.++||++|+++++  |.. ..+....+.++|+|+++.|..|+     
T Consensus       195 ~~l~~~i~~~-t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~~~~~~D~~~~s~~k~~~~~~  271 (447)
T PRK00451        195 EALEAAVDDD-TAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPPGEYGADIVVGEGQPLGIPLS  271 (447)
T ss_pred             HHHHHhcCCC-eEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCcccCCCCEEEECCCcCCCCCC
Confidence            9999999875 999999999 8999999999999999999999998  543 22333345678999999977665     


Q ss_pred             CCccccceeEEEEeCHHHHHHHH----------------------------HHhHhhCCCc-cH---HHHHHHHH--hhH
Q 013019          359 IGGHNDVLAGSISGSGKLVTQIR----------------------------NLHHVLGGAL-NP---NAAYLIIR--GMK  404 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~~eli~~lr----------------------------~~~~~~G~~l-s~---~~a~l~lr--gL~  404 (451)
                      ++|++   +|+++.++++++++.                            ..+....... ..   ..++..++  +-+
T Consensus       272 ~~Gpg---~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~  348 (447)
T PRK00451        272 FGGPY---LGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPE  348 (447)
T ss_pred             CCCCC---chHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHH
Confidence            56664   889888888877631                            1110000000 11   22222222  223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          405 TLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       405 tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      .+....++..++++.+.+.|++.++++.
T Consensus       349 g~~~~~~~~~~~~~~l~~~L~~~~g~~~  376 (447)
T PRK00451        349 GLRELAEQNHQKAHYLAERLAEIGGVEL  376 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCEEe
Confidence            4556667788889999999999887643

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.76  E-value=1.3e-16  Score=161.26  Aligned_cols=214  Identities=17%  Similarity=0.215  Sum_probs=151.7

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae----~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      +..+.+++.|++++|.+    ..+++++|++++..++.+++++||++++..+.+.+..  +...++..|.++..++.   
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~  108 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEY  108 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCC
Confidence            56788999999999974    2345789999999999999988888666555443321  22345567877776642   


Q ss_pred             --CCHHHHHHhhcCC-CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCccc
Q 013019          283 --ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF  358 (451)
Q Consensus       283 --~D~d~Le~ai~~~-~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~  358 (451)
                        .|+++++++++++ ++++|++.+++|++|.+.|+++|.++|+++|+++|+|++++.+. ......+++|+++.|++|+
T Consensus       109 ~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~  188 (355)
T TIGR03301       109 EPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKC  188 (355)
T ss_pred             CCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcc
Confidence              3789999998642 46788888899999999999999999999999999999765432 2223356899999999999


Q ss_pred             CCccccceeEEEEeCHHHHHHHHHHhH-----------------hhCCCccHHHHHHHHHhhHH------HHHHHHHHHH
Q 013019          359 IGGHNDVLAGSISGSGKLVTQIRNLHH-----------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNS  415 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~~eli~~lr~~~~-----------------~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~  415 (451)
                      ++|+.  ..|+++++++++++++....                 ....+.+....+.+..+++.      +..++++..+
T Consensus       189 l~~~~--G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~  266 (355)
T TIGR03301       189 LEGVP--GFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRR  266 (355)
T ss_pred             cccCC--ceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            86543  25899999998887652100                 00112333333333333332      3445667778


Q ss_pred             HHHHHHHHHHcC
Q 013019          416 TALRMAEILEAH  427 (451)
Q Consensus       416 nA~~Lae~L~~~  427 (451)
                      +++.+.+.|+++
T Consensus       267 ~~~~~~~~L~~~  278 (355)
T TIGR03301       267 NRELLVDGLRAL  278 (355)
T ss_pred             HHHHHHHHHHHc
Confidence            888888988876

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.76  E-value=1.7e-16  Score=164.37  Aligned_cols=212  Identities=15%  Similarity=0.130  Sum_probs=137.2

Q ss_pred             hHHHHHHHHHhhhC-------CCcE--EEeCCHH-HHHHHHHHHH--ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          211 TTVVVEEKMSALEG-------AEST--VIMASGM-SASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       211 t~~~Lee~LA~l~g-------ae~~--vv~sSG~-aAi~~al~al--l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      ....|++++++++.       .++.  +++|+|. +|+..++.++  +++||+|++++|+|......    ++..|.++.
T Consensus        70 G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~----~~~~g~~~v  145 (396)
T PRK09257         70 GLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAI----FEAAGLEVK  145 (396)
T ss_pred             CCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHH----HHHcCCcEE
Confidence            34567777777642       1223  2556665 8999887655  58999999999999987644    345666665


Q ss_pred             EeC-------CCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----
Q 013019          279 VID-------PADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (451)
Q Consensus       279 ~vd-------~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----  341 (451)
                      .++       ..|+++++++++.  .+++++++++|+||||.+++   +++|+++|++||+++|+|++|......     
T Consensus       146 ~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~  225 (396)
T PRK09257        146 TYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDA  225 (396)
T ss_pred             EEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHH
Confidence            543       2478899888752  23567777999999999986   677888999999999999998754321     


Q ss_pred             ccc---c-CC-CcEEEECCcccCCccccceeEEEE--e-CHHHH----HHHHHHhHhhCCCccHHHHHHHHHhh------
Q 013019          342 KAL---S-LG-ADLVLHSATKFIGGHNDVLAGSIS--G-SGKLV----TQIRNLHHVLGGALNPNAAYLIIRGM------  403 (451)
Q Consensus       342 ~pl---~-~G-aDiVv~S~SK~l~G~gdv~gG~Iv--~-~~eli----~~lr~~~~~~G~~ls~~~a~l~lrgL------  403 (451)
                      .++   . .+ ..+++.|+||.++.+| .+.||++  . +++.+    .+++..........+...+.++.+.+      
T Consensus       226 ~~~~~~~~~~~~vi~i~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~  304 (396)
T PRK09257        226 YGLRAFAAAGLELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELR  304 (396)
T ss_pred             HHHHHHHhcCCcEEEEEEcCCcCcccc-ccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHH
Confidence            111   1 11 3488999999998766 5678876  2 44433    33333322222233444433333222      


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          404 ----KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       404 ----~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                          +.+....++..++.+.+.+.|+++
T Consensus       305 ~~~~~~~~~~r~~~~~rr~~l~~~L~~~  332 (396)
T PRK09257        305 AEWEAELEEMRERIKAMRQLLVEALKAK  332 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                222233455566777788888876

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.76  E-value=1.1e-16  Score=168.45  Aligned_cols=184  Identities=18%  Similarity=0.155  Sum_probs=142.5

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--------------cCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--------------PAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all--------------~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      ...++||++||+++|.+++++++||..|+..++.++.              ..+|.|+....+|.+.+..+...-.+-+.
T Consensus       147 ~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a  226 (476)
T PLN02955        147 TYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNV  226 (476)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCc
Confidence            4567899999999999999999999999999988873              45678888888888876555322122247


Q ss_pred             EEEEeCCCCHHHHHHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---------cc
Q 013019          276 TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------AL  344 (451)
Q Consensus       276 ~v~~vd~~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---------pl  344 (451)
                      ++..++..|+++|++.++..  +.++|++|...++.|.+.|+++|.++|+++|++||+||+++.+....         .+
T Consensus       227 ~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~  306 (476)
T PLN02955        227 EVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNC  306 (476)
T ss_pred             eEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCC
Confidence            77778889999999888532  35799999999999999999999999999999999999987653322         01


Q ss_pred             cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHH
Q 013019          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAY  397 (451)
Q Consensus       345 ~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~  397 (451)
                      ....||++.|++|.+|..    ||++++++++++.++....  .++..+++..+.
T Consensus       307 ~~di~ii~~TLsKA~G~~----GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aa  357 (476)
T PLN02955        307 EADVDLCVGTLSKAAGCH----GGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAA  357 (476)
T ss_pred             CCCCcEEEEeCccchhcc----CceeecHHHHHHHHHHhCCCCeecccccHHHHH
Confidence            123689999999999865    6999999988888876443  234444444433

>PRK07908 hypothetical protein; Provisional

Probab=99.75  E-value=8.3e-17  Score=163.78  Aligned_cols=209  Identities=16%  Similarity=0.179  Sum_probs=141.4

Q ss_pred             cCCCch-hHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          205 GRYGNP-TTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       205 ~R~~np-t~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ..|+.+ ....|+++++++++. ++.+++++|+ +++..++.  +++| .+++..|+|....    ..++..|+++..++
T Consensus        52 ~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l~~~-~viv~~P~y~~~~----~~~~~~G~~i~~v~  124 (349)
T PRK07908         52 AAYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--LRPR-RAAVVHPSFTEPE----AALRAAGIPVHRVV  124 (349)
T ss_pred             hcCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--cCCC-eEEEeCCCChHHH----HHHHHcCCEEEeec
Confidence            345443 567899999999985 4455555555 88888776  5665 5667788887654    34456788877664


Q ss_pred             CC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc--c---ccCCCcEE
Q 013019          282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--A---LSLGADLV  351 (451)
Q Consensus       282 ~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~--p---l~~GaDiV  351 (451)
                      ..     |++    .+++ ++++|++++|+||||.+++.++|.++|++ +.++|+|++|...+...  +   .+....++
T Consensus       125 ~~~~~~~d~~----~l~~-~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~  198 (349)
T PRK07908        125 LDPPFRLDPA----AVPD-DADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLV  198 (349)
T ss_pred             cCcccCcChh----Hhcc-CCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEE
Confidence            32     333    3444 48999999999999999999999999974 78899999986432111  1   12223478


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHc
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR-----GMKTLHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lr-----gL~tl~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      +.|+||.++.+| ++.||++++++++++++.....+.  +++.....+..     ..+.+....++..++.+.+.+.|++
T Consensus       199 i~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  275 (349)
T PRK07908        199 LRSLTKTWSLAG-LRVGYALGAPDVLARLTRGRAHWP--VGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA  275 (349)
T ss_pred             EeecccccCCcc-ceeeeeecCHHHHHHHHhcCCCCC--ccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999998665 578999999999998887654432  23332222211     2234444455666777778888887


Q ss_pred             CCCe
Q 013019          427 HPKV  430 (451)
Q Consensus       427 ~p~V  430 (451)
                      + ++
T Consensus       276 ~-~~  278 (349)
T PRK07908        276 V-GA  278 (349)
T ss_pred             C-Cc
Confidence            6 44

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.75  E-value=3.8e-17  Score=164.99  Aligned_cols=196  Identities=16%  Similarity=0.134  Sum_probs=140.4

Q ss_pred             HHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc------------CC--CeEEEcCCCCcchHHHHHHhhhcC
Q 013019          212 TVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP------------AG--GHIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       212 ~~~Lee~LA~l~gae----~~vv~sSG~aAi~~al~all~------------~G--D~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      .+++.+++++++|.+    +.+++++|++|+..++.++..            +|  +.|+++++.|.......    ...
T Consensus        40 e~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~----~~~  115 (345)
T cd06450          40 EAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAA----AYL  115 (345)
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHH----HHH
Confidence            344555567777864    678888888999999888753            33  37888888888754333    334


Q ss_pred             CcEEEEeC-----CCCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--
Q 013019          274 GITATVID-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--  341 (451)
Q Consensus       274 Gi~v~~vd-----~~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--  341 (451)
                      |.++..++     ..|+++|++++++.     ++++|+++.|+||+|.+.|+++|+++|+++|+++++|++++.+...  
T Consensus       116 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~  195 (345)
T cd06450         116 DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFP  195 (345)
T ss_pred             hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhCh
Confidence            66666654     24799999999750     3789999999999999999999999999999999999998754321  


Q ss_pred             --cc--cc-CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh--hHHHHHHHHHHH
Q 013019          342 --KA--LS-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG--MKTLHLRVQQQN  414 (451)
Q Consensus       342 --~p--l~-~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg--L~tl~~Rl~~~~  414 (451)
                        ..  .. .++|.++.|++|+++++.  .+|++..+                   ....|.+++.  ...+..++++..
T Consensus       196 ~~~~~~~~~~~~d~~~~s~~K~l~~p~--g~g~~~~~-------------------~~~~~~~l~~l~~~g~~~~~~~~~  254 (345)
T cd06450         196 EPRHLDFGIERVDSISVDPHKYGLVPL--GCSAVLVR-------------------ALKLWATLRRFGRDGYGEHIDRIV  254 (345)
T ss_pred             hhHHHhcCccccCEEEEchhHhhCCCc--chHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHHHHH
Confidence              11  01 268999999999987653  35655433                   2223333332  234566778888


Q ss_pred             HHHHHHHHHHHcCCCeEE
Q 013019          415 STALRMAEILEAHPKVLL  432 (451)
Q Consensus       415 ~nA~~Lae~L~~~p~V~~  432 (451)
                      +.++.+.+.|++.+++..
T Consensus       255 ~~~~~l~~~L~~~~~~~~  272 (345)
T cd06450         255 DLAKYLAELIRADPGFEL  272 (345)
T ss_pred             HHHHHHHHHHhcCCCeEE
Confidence            899999999999887744

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PLN02397 aspartate transaminase

Probab=99.75  E-value=1.9e-16  Score=166.00  Aligned_cols=213  Identities=16%  Similarity=0.163  Sum_probs=137.8

Q ss_pred             hhHHHHHHHHHhhhCC-------Cc-E----EEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEE
Q 013019          210 PTTVVVEEKMSALEGA-------ES-T----VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  277 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga-------e~-~----vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v  277 (451)
                      ....+|++.+++++..       ++ .    ++.++|..++...+..++.+||+|++++|.|......    ++..|.++
T Consensus        91 ~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~----~~~~g~~~  166 (423)
T PLN02397         91 EGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNI----FRDAGVPV  166 (423)
T ss_pred             CCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHH----HHHcCCeE
Confidence            3455677888776532       12 1    2334455556666666677999999999999886643    34556665


Q ss_pred             EEeC-------CCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---
Q 013019          278 TVID-------PADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---  342 (451)
Q Consensus       278 ~~vd-------~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---  342 (451)
                      ..++       ..|++.+++.+..  .+++++++++|+||||.+.+   +++|+++|++||+++|+|++|.......   
T Consensus       167 ~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~  246 (423)
T PLN02397        167 RTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDA  246 (423)
T ss_pred             EEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhh
Confidence            5542       2378877777752  34789999999999999986   6678888999999999999987653211   


Q ss_pred             ---c---cc-CC-CcEEEECCcccCCccccceeEEEE---eCHHHHHHHH----HHhHhhCCCccHHHHHHHHHhhHH--
Q 013019          343 ---A---LS-LG-ADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMKT--  405 (451)
Q Consensus       343 ---p---l~-~G-aDiVv~S~SK~l~G~gdv~gG~Iv---~~~eli~~lr----~~~~~~G~~ls~~~a~l~lrgL~t--  405 (451)
                         +   +. .+ .-|++.|+||.++.+| .+.||++   +++++++++.    ........+.+...+.++...|+.  
T Consensus       247 ~~~~~~~~~~~~~~vI~~~SfSK~~~~~G-~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~  325 (423)
T PLN02397        247 DAQSVRMFVEDGHEILVAQSYAKNMGLYG-ERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPE  325 (423)
T ss_pred             hhHHHHHHHhcCCcEEEEEECcccCCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHH
Confidence               1   11 12 2488999999999776 4678763   3566555433    333222333444444444333321  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHcC
Q 013019          406 --------LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       406 --------l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                              +....++..++.+.+.+.|+++
T Consensus       326 ~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~  355 (423)
T PLN02397        326 LFSEWTKELKGMADRIISMRQKLYDALEAR  355 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    2333456667788888888876

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.74  E-value=4.8e-16  Score=163.18  Aligned_cols=212  Identities=15%  Similarity=0.155  Sum_probs=156.3

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEeCCHH-HHHHHHHHHHcc---CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          210 PTTVVVEEKMSALEGAE---STVIMASGM-SASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae---~~vv~sSG~-aAi~~al~all~---~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      -....|++.++++.|.+   .++++++|+ .++.+++.++-.   +||+||++...|.++.    +.+...|+++.++|.
T Consensus       105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~----kAi~~~G~~pv~Vd~  180 (444)
T TIGR03531       105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCI----KAISTAGFEPRVIET  180 (444)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHH----HHHHHcCCeEEEeee
Confidence            34567899999999987   799999999 688888777642   5899999998877766    344566887777763


Q ss_pred             --------CCHHHHHHhhcCC--CeEEEEEeCCC-CCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc------cccc
Q 013019          283 --------ADMEGLEAALNNN--NVSLFFTESPT-NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALS  345 (451)
Q Consensus       283 --------~D~d~Le~ai~~~--~tklV~lesPs-NPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~------~pl~  345 (451)
                              .|+++|+++|++.  ++.++++.+|+ .+.|.+.|+++|+++|++||+++|+|++|+.....      ....
T Consensus       181 ~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~  260 (444)
T TIGR03531       181 VLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIK  260 (444)
T ss_pred             eecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhcccc
Confidence                    3799999999752  35666776665 45567899999999999999999999999853211      2233


Q ss_pred             CC-CcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHH--HHhhHHHHHHHHHHHHHHHHHH
Q 013019          346 LG-ADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLI--IRGMKTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       346 ~G-aDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~--lrgL~tl~~Rl~~~~~nA~~La  421 (451)
                      .| +|+++.|++|++..+++  ||+++. +++++++++..............+|+.  ..|.+.+...+++..++++.+.
T Consensus       261 ~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~  338 (444)
T TIGR03531       261 VGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLK  338 (444)
T ss_pred             ccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            44 69999999999997763  777766 678888777643222112223344443  3466888888888999999999


Q ss_pred             HHHHcC
Q 013019          422 EILEAH  427 (451)
Q Consensus       422 e~L~~~  427 (451)
                      +.|++.
T Consensus       339 ~~L~~l  344 (444)
T TIGR03531       339 ELLQKL  344 (444)
T ss_pred             HHHHHH
Confidence            888764

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.74  E-value=2.8e-16  Score=161.58  Aligned_cols=211  Identities=18%  Similarity=0.135  Sum_probs=145.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      .++..+++|++||+++|.+.+++++||+.|+..++..+.++||.|++....|+++...+.. +.  +..+. +...|+++
T Consensus        54 ~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~-~~--~~~~~-~~~~d~~~  129 (370)
T PRK05937         54 PSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSV-IS--GWHQS-FRHNDLDH  129 (370)
T ss_pred             ChHHHHHHHHHHHHHhCCCeEEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHH-cC--CceEE-ecCCCHHH
Confidence            4567899999999999999999999999998877666667889999989899887765533 22  44444 35678999


Q ss_pred             HHHhhcC-----CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc-----ccCCC---cEEEEC
Q 013019          288 LEAALNN-----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-----LSLGA---DLVLHS  354 (451)
Q Consensus       288 Le~ai~~-----~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p-----l~~Ga---DiVv~S  354 (451)
                      |++.+++     +++.+|++++++|++|.+.|+++|.++|+++|+++++|++++.+.....     ..+|.   ++++.|
T Consensus       130 l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~t  209 (370)
T PRK05937        130 LESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVT  209 (370)
T ss_pred             HHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEe
Confidence            9998863     2366888999999999999999999999999999999999876532211     12332   367889


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHc
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTLH----LRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~tl~----~Rl~~~~~nA~~Lae~L~~  426 (451)
                      ++|.+++.|   +| ++..++..+.+.....  .+....++.....+..+++.+.    .+.++..++...+.+.|..
T Consensus       210 lsK~~g~~G---~~-vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~  283 (370)
T PRK05937        210 YSKALGSMG---AA-LLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS  283 (370)
T ss_pred             chhhhhcCc---eE-EEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence            999998765   44 4555665555443211  1223345554444444444432    1233444455555555543

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.73  E-value=2e-16  Score=169.18  Aligned_cols=144  Identities=17%  Similarity=0.302  Sum_probs=106.0

Q ss_pred             EEEeC-CHHHHHHHHHHH-----HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-------CCCHHHHHHhhcC
Q 013019          228 TVIMA-SGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-------PADMEGLEAALNN  294 (451)
Q Consensus       228 ~vv~s-SG~aAi~~al~a-----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-------~~D~d~Le~ai~~  294 (451)
                      .|+++ +|++|+..++.+     ++++||+|++++|.|........  +...++.+..++       ..|+++|++++++
T Consensus       163 ~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~--l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~  240 (527)
T PRK09275        163 DLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE--LPRYDLEVVHINADEENEWQYPDSELEKLRDP  240 (527)
T ss_pred             eEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH--HcCCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence            45555 555899888876     68999999999999988654332  223344444442       1367899998877


Q ss_pred             CCeEEEEEeCCCCCcccccc---HHHHHHHHHh--cCCEEEEecCCCCCCcc-cc-ccC--CCcEEEECCcccCCccccc
Q 013019          295 NNVSLFFTESPTNPFLRCVD---VKLVSDLCHK--KGAIVCIDGTFATPLNQ-KA-LSL--GADLVLHSATKFIGGHNDV  365 (451)
Q Consensus       295 ~~tklV~lesPsNPtG~v~D---L~~IaelA~~--~g~~lVVD~tfa~~~~~-~p-l~~--GaDiVv~S~SK~l~G~gdv  365 (451)
                       ++|+|++++|+||||.+++   +++|+++|++  ++++||+|++|...... .+ ...  ...|++.|+||+++.+| .
T Consensus       241 -~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG-~  318 (527)
T PRK09275        241 -SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATG-W  318 (527)
T ss_pred             -CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcH-h
Confidence             4999999999999999987   6778888854  59999999998764321 11 111  24589999999998777 4


Q ss_pred             eeEEEEeCHH
Q 013019          366 LAGSISGSGK  375 (451)
Q Consensus       366 ~gG~Iv~~~e  375 (451)
                      +.||++++++
T Consensus       319 RlG~i~~~~~  328 (527)
T PRK09275        319 RLGVIALHED  328 (527)
T ss_pred             HHhhhhcCch
Confidence            6789888875

>PLN02672 methionine S-methyltransferase

Probab=99.73  E-value=5.8e-16  Score=175.64  Aligned_cols=211  Identities=16%  Similarity=0.114  Sum_probs=148.2

Q ss_pred             HHHHHHHHHhhhCCC----cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          212 TVVVEEKMSALEGAE----STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       212 ~~~Lee~LA~l~gae----~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ++++.+++++.+|.+    +.+++++|+ +++..++.+++++||+|+++.|+|+.....    ++..|.++..++.    
T Consensus       736 r~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~----a~~~Ga~vv~Vpl~~e~  811 (1082)
T PLN02672        736 RPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSA----AKFLKANFRRIPTKSSD  811 (1082)
T ss_pred             HHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEEeccccc
Confidence            678999999988752    367777777 777788899999999999999999986643    4456777666543    


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCC-CCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-cc---------c-
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPT-NPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-KA---------L-  344 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPs-NPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-~p---------l-  344 (451)
                         .|+++|++++++.+.++|++++|+ ||||.+++   +++|+++|++||++||+|++|...... .+         + 
T Consensus       812 gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~  891 (1082)
T PLN02672        812 GFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILS  891 (1082)
T ss_pred             CCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHH
Confidence               257889999865334689999998 99999986   677888899999999999998632211 00         0 


Q ss_pred             cC------CCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCCC-ccHHHHHHHHHh--------hHHHHH
Q 013019          345 SL------GADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA-LNPNAAYLIIRG--------MKTLHL  408 (451)
Q Consensus       345 ~~------GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~~-ls~~~a~l~lrg--------L~tl~~  408 (451)
                      .+      ..-+++.|+||.++.+| ++.||+++++ +++++++......+.. .+...+..++..        .+.+..
T Consensus       892 ~~~~~sks~nVIvL~SfSKkf~lpG-LRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e  970 (1082)
T PLN02672        892 RLKSSNPSFAVALLGGLSTELLSGG-HEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAE  970 (1082)
T ss_pred             HhccccCCceEEEEeCcHHhhccHH-HHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            01      12478889999999887 6789999864 5888887754333222 122222222211        122333


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q 013019          409 RVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ..+...++.+.+.+.|+++
T Consensus       971 ~r~~Lk~rRd~L~e~L~~~  989 (1082)
T PLN02672        971 QKKILKSRAERLKETLEAC  989 (1082)
T ss_pred             HHHHHHHHHHHHHHHHHHC
Confidence            4455677888899999876

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.72  E-value=1.5e-15  Score=154.82  Aligned_cols=213  Identities=14%  Similarity=0.106  Sum_probs=148.4

Q ss_pred             HHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHcc----CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       212 ~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~----~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .++++++|++++|.+  ..+++++|++++..++.++..    +||+|++.++.|.+..    ..++..|+++..++.   
T Consensus        61 ~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~----~~~~~~g~~~~~v~~~~~  136 (371)
T PRK13520         61 EEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFD----KAADMLGVELRRAPLDDD  136 (371)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHH----HHHHHcCceEEEecCCCC
Confidence            367899999999974  457777888999888877654    5789999998887633    344566888877753   


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc---ccc--c---cCCCcEEE
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKA--L---SLGADLVL  352 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~---~~p--l---~~GaDiVv  352 (451)
                        .|+++|+++++++ +++|++..++|++|.+.|+++|.++|+++|+++++|++|+.+..   ...  +   ..|+|.+.
T Consensus       137 ~~~d~~~l~~~i~~~-~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~  215 (371)
T PRK13520        137 YRVDVKAVEDLIDDN-TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSIT  215 (371)
T ss_pred             CcCCHHHHHHHHhhC-CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEE
Confidence              3799999999875 77777778899999999999999999999999999999864321   111  1   24789999


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhC--------CCccH---HHHHHHHHhh--HHHHHHHHHHHHHHHH
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--------GALNP---NAAYLIIRGM--KTLHLRVQQQNSTALR  419 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G--------~~ls~---~~a~l~lrgL--~tl~~Rl~~~~~nA~~  419 (451)
                      .|.+|+..++. ..|++++.++++++.+......+.        ++.+.   ..++.+++.+  +.+..+.++..++++.
T Consensus       216 ~s~~K~~~a~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~  294 (371)
T PRK13520        216 IDPHKMGLAPI-PAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRW  294 (371)
T ss_pred             ECCccccCccC-CceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHH
Confidence            99999865432 134555567777776642211111        11111   2223333322  2244567778888889


Q ss_pred             HHHHHHcCCCeE
Q 013019          420 MAEILEAHPKVL  431 (451)
Q Consensus       420 Lae~L~~~p~V~  431 (451)
                      +.+.|++. ++.
T Consensus       295 l~~~L~~~-g~~  305 (371)
T PRK13520        295 LAEELKER-GFE  305 (371)
T ss_pred             HHHHHHhC-CCE
Confidence            99999876 554

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.72  E-value=1.2e-15  Score=155.71  Aligned_cols=213  Identities=13%  Similarity=0.094  Sum_probs=147.7

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc------cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all------~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ...+.++++|++++|.+  ..+++++|++++..++.++.      ++||+|+++++.|.+..    ..++..|+++..++
T Consensus        59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~----~~~~~~G~~~~~v~  134 (373)
T TIGR03812        59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFE----KAAEMLGLELRYAP  134 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHH----HHHHHcCCeEEEEe
Confidence            44578999999999974  45778888888877776654      36799999998887643    34556788887775


Q ss_pred             C-----CCHHHHHHhhcCCCe-EEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc--------ccccc--
Q 013019          282 P-----ADMEGLEAALNNNNV-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--------QKALS--  345 (451)
Q Consensus       282 ~-----~D~d~Le~ai~~~~t-klV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~--------~~pl~--  345 (451)
                      .     .|+++++++++++ + .++++ +|+||+|.+.|+++|.++|+++|+++++|++|+....        ...++  
T Consensus       135 ~~~~~~~d~~~l~~~l~~~-~~~vv~~-~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~  212 (373)
T TIGR03812       135 LDEDYTVDVKDVEDLIDDN-TIGIVGI-AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFS  212 (373)
T ss_pred             eCCCCCcCHHHHHHHHhhC-cEEEEEE-CCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcccc
Confidence            3     4799999999775 5 45555 5899999999999999999999999999999864321        11122  


Q ss_pred             -CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCC--------CccHHHH---HHHHHhh--HHHHHHHH
Q 013019          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--------ALNPNAA---YLIIRGM--KTLHLRVQ  411 (451)
Q Consensus       346 -~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~--------~ls~~~a---~l~lrgL--~tl~~Rl~  411 (451)
                       .|+|.+..|.+|+..++. ..||+++.++++++.++........        ..+....   +..++-+  +.+..+.+
T Consensus       213 ~~~~d~~~~s~~K~~~~~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~  291 (373)
T TIGR03812       213 LPGVQSITIDPHKMGLSPI-PAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVA  291 (373)
T ss_pred             CCCCCEEEECccccCCCcC-CceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHH
Confidence             378999999999754332 1356777788888776422221111        1122222   2222222  23445677


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 013019          412 QQNSTALRMAEILEAHPK  429 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~  429 (451)
                      +..++++.+.+.|++.+.
T Consensus       292 ~~~~~~~~l~~~L~~~g~  309 (373)
T TIGR03812       292 ECMENTRYLVEELKKIGF  309 (373)
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            888899999999988753

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.71  E-value=1.6e-15  Score=152.03  Aligned_cols=219  Identities=22%  Similarity=0.311  Sum_probs=149.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCeEEEcC-CCCcchHHHHH------HhhhcCCcE
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TVLPKMGIT  276 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv---~sSG~aAi~~al~all~~GD~VIv~~-~~Y~~t~~~l~------~~l~~~Gi~  276 (451)
                      |++..++.||+..|+.+|+|++++   +-||+.||.++|.++++|||+++... .-|......+.      ..++.+|+.
T Consensus        51 Y~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~  130 (403)
T PF06838_consen   51 YDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIK  130 (403)
T ss_dssp             TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-E
T ss_pred             CCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCce
Confidence            367889999999999999999998   67999999999999999999988643 44655444431      235778999


Q ss_pred             EEEeCC-----CCHHHHHHhhcCCCeEEEEEeCCC----CCccccccHHHHHHHHHh--cCCEEEEecCCCCCC-ccccc
Q 013019          277 ATVIDP-----ADMEGLEAALNNNNVSLFFTESPT----NPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKAL  344 (451)
Q Consensus       277 v~~vd~-----~D~d~Le~ai~~~~tklV~lesPs----NPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~-~~~pl  344 (451)
                      .+.++.     .|.+.++++++++ ||+|++.--.    -|...+.+|+++.+++|+  -+++++|||+|+.+. ...|.
T Consensus       131 Y~~v~L~~dg~~D~~~i~~~~~~~-tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~  209 (403)
T PF06838_consen  131 YREVPLTEDGTIDWEAIKKALKPN-TKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT  209 (403)
T ss_dssp             EEE--B-TTSSB-HHHHHHHHHTT-EEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG
T ss_pred             eEEEeecCCCCcCHHHHHHhhccC-ceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc
Confidence            888863     3799999999974 9999996543    344556678888888887  479999999999875 46788


Q ss_pred             cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhh------CCCccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013019          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL------GGALNPNAAYLIIRGMKTLHLRVQQQNSTAL  418 (451)
Q Consensus       345 ~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~------G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~  418 (451)
                      +.|+|++..|+-|-.||.--..||||+++++++++.......-      |.++.  ...++.+||---+.-+.+..+.+.
T Consensus       210 ~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~--~~R~~~QGlFlAP~vV~eAlKgai  287 (403)
T PF06838_consen  210 EVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLG--TNRLMFQGLFLAPHVVGEALKGAI  287 (403)
T ss_dssp             GGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TT--THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcc--hHHHHHhHHhhchHHHHHHHHHHH
Confidence            9999999999999999875557999999999999876543322      22221  233445566555555666667777


Q ss_pred             HHHHHHHcCC
Q 013019          419 RMAEILEAHP  428 (451)
Q Consensus       419 ~Lae~L~~~p  428 (451)
                      ..+..+++..
T Consensus       288 f~A~~fe~lG  297 (403)
T PF06838_consen  288 FAAALFEKLG  297 (403)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            7777777653

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.71  E-value=1.4e-15  Score=162.66  Aligned_cols=145  Identities=17%  Similarity=0.253  Sum_probs=106.8

Q ss_pred             cEEEeCCHHHHHHHHHHH-----HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC------------CCHHHHH
Q 013019          227 STVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------------ADMEGLE  289 (451)
Q Consensus       227 ~~vv~sSG~aAi~~al~a-----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~------------~D~d~Le  289 (451)
                      +.+++.+|++|+..++.+     ++.+||+|++++|.|........  +...|+++..++.            .|.++|+
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~--l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~  234 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE--LPRYDFEVVRIKADEMTEDGTHTWQYPDKELE  234 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH--HhcCCcEEEEeecccccccccccCCCCHHHHH
Confidence            344455555899888876     78999999999999988654332  2334555544432            2568899


Q ss_pred             HhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhc--CCEEEEecCCCCCCcc--ccccC--CCcEEEECCcccCC
Q 013019          290 AALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK--GAIVCIDGTFATPLNQ--KALSL--GADLVLHSATKFIG  360 (451)
Q Consensus       290 ~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~--g~~lVVD~tfa~~~~~--~pl~~--GaDiVv~S~SK~l~  360 (451)
                      +++++ ++|+|++++|+||||.+++   +++|+++|++|  +++||+||+|+.....  .....  ...|++.|+||+++
T Consensus       235 ~~~~~-~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg  313 (521)
T TIGR03801       235 KLRDP-SIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFG  313 (521)
T ss_pred             HhcCC-CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhcc
Confidence            88776 4999999999999999987   67788889886  8999999998754321  11111  23589999999998


Q ss_pred             ccccceeEEEEeCHH
Q 013019          361 GHNDVLAGSISGSGK  375 (451)
Q Consensus       361 G~gdv~gG~Iv~~~e  375 (451)
                      .+| .+.|+++++++
T Consensus       314 ~~G-~RlG~i~~~~~  327 (521)
T TIGR03801       314 ATG-WRLGTIALHKD  327 (521)
T ss_pred             Cch-hhhhhhhcCch
Confidence            777 46788888754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.71  E-value=1.5e-15  Score=157.53  Aligned_cols=217  Identities=17%  Similarity=0.163  Sum_probs=149.5

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc---------CC-CeEEEcCCCCcc-hHHHHHHhh-----
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AG-GHIVTTTDCYRK-TRIFIETVL-----  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~---------~G-D~VIv~~~~Y~~-t~~~l~~~l-----  270 (451)
                      ..++...+|+++|+++.+.+.+++++||++|+..++.....         +| ++||..+..|.+ +...+...-     
T Consensus        79 ~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~  158 (396)
T PRK04073         79 FHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYK  158 (396)
T ss_pred             cCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccc
Confidence            45677888999999999888899999999999998876532         34 678888776665 332221100     


Q ss_pred             hcCC---cEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC-Ccc-
Q 013019          271 PKMG---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LNQ-  341 (451)
Q Consensus       271 ~~~G---i~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~-~~~-  341 (451)
                      ..++   ..+..++..|+++++++++++ +++|++|.|+||+|.+.+    +++|.++|+++|+++|+||++... ... 
T Consensus       159 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~  237 (396)
T PRK04073        159 RGFGPMLPGIKKIPYGDLEALKAAITPN-TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK  237 (396)
T ss_pred             cCCCCCCCCceEeCCCCHHHHHHhcccC-eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH
Confidence            0011   123456667899999999764 999999999999999876    899999999999999999997632 111 


Q ss_pred             ----ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHH
Q 013019          342 ----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNS  415 (451)
Q Consensus       342 ----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~  415 (451)
                          .......|+++  ++|.+++.+ .+.|++++++++++.+...........++..+..++..|+.+.  ...++..+
T Consensus       238 ~~~~~~~~~~pdi~~--~sK~lg~gg-~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~  314 (396)
T PRK04073        238 LFACDWDNVTPDMYI--LGKALGGGV-FPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLE  314 (396)
T ss_pred             HHHhhhcCCCCCEEE--ecccccCCC-CcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence                11222356665  789998764 4578899999988877543222222346666666666665442  12344555


Q ss_pred             HHHHHHHHHHcC
Q 013019          416 TALRMAEILEAH  427 (451)
Q Consensus       416 nA~~Lae~L~~~  427 (451)
                      ..+.+.+.|++.
T Consensus       315 ~~~~l~~~L~~l  326 (396)
T PRK04073        315 LGEYFKEQLKEI  326 (396)
T ss_pred             HHHHHHHHHHhh
Confidence            677777777654

>PLN03032 serine decarboxylase; Provisional

Probab=99.70  E-value=1.4e-15  Score=156.90  Aligned_cols=221  Identities=17%  Similarity=0.144  Sum_probs=160.5

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~gae--~--~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      .+.|++......+++.+++++++|.+  +  .+++++|++|+..++.+..  .++++|+++...|.+.....    +.+|
T Consensus        57 ~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa----~~lg  132 (374)
T PLN03032         57 ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAA----RMYR  132 (374)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHH----HHcC
Confidence            34566655666777889999999963  3  4788888999988877653  24568999999998876443    3344


Q ss_pred             cEEEEeC-----CCCHHHHHHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcC-----CEEEEecCCCCCCcc-
Q 013019          275 ITATVID-----PADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-----AIVCIDGTFATPLNQ-  341 (451)
Q Consensus       275 i~v~~vd-----~~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g-----~~lVVD~tfa~~~~~-  341 (451)
                      +.++.++     ..|+++|+++|+++  ++.+|++...+|++|.+.|+++|+++|+++|     +++++|.+++.+... 
T Consensus       133 ~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~  212 (374)
T PLN03032        133 MEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPF  212 (374)
T ss_pred             CCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhc
Confidence            4444443     24899999999763  3678888889999999999999999999996     589999998653211 


Q ss_pred             --c----cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--------hCCC--ccHHHHHHHHH--hh
Q 013019          342 --K----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------LGGA--LNPNAAYLIIR--GM  403 (451)
Q Consensus       342 --~----pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--------~G~~--ls~~~a~l~lr--gL  403 (451)
                        .    .+..++|.+..|.||+++.+-  ..|+++.++++++.+.....+        .|..  ......|+.++  |.
T Consensus       213 ~~~~~~~~~~~~vDSis~s~HK~~g~P~--g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~  290 (374)
T PLN03032        213 VSRAPEVTFRKPIGSVSVSGHKFLGCPM--PCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGY  290 (374)
T ss_pred             cCCCcccCCCcCCcEEEECcccccCCCc--CeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCH
Confidence              0    123479999999999998453  378888877666554321111        2222  23456676654  56


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          404 KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       404 ~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +.+..++++..++++++.+.|+++
T Consensus       291 ~g~~~~~~~~~~~a~~l~~~l~~~  314 (374)
T PLN03032        291 RGIKRDVQHCMRNAHYLKDRLTEA  314 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            778889999999999999999886

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.70  E-value=2e-15  Score=156.37  Aligned_cols=224  Identities=16%  Similarity=0.182  Sum_probs=153.6

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCC-CeEEEcCCCCcchHHHHHHh---------h
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETV---------L  270 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~~G-D~VIv~~~~Y~~t~~~l~~~---------l  270 (451)
                      ..+|.++...+|+++|+++.+.   +..++++||++|+..++..+..+| ++|+..++.|.+........         +
T Consensus        79 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~  158 (398)
T PRK03244         79 SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPF  158 (398)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCC
Confidence            3567788888999999999874   467778899999999998776676 46777777787642211111         1


Q ss_pred             hcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC-Cc-----
Q 013019          271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LN-----  340 (451)
Q Consensus       271 ~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~-~~-----  340 (451)
                      ...+.++..++..|++++++++++ ++++|++|.++||+|.+.+    +++|.++|++||+++|+||++... ..     
T Consensus       159 ~~~~~~~~~~~~~d~~~l~~~~~~-~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~  237 (398)
T PRK03244        159 EPLPGGVEHVPYGDVDALAAAVDD-DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFA  237 (398)
T ss_pred             CCCCCCceEeCCCCHHHHHHhhcC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHh
Confidence            112234455666689999999865 4999999999999999987    899999999999999999997531 11     


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHHHH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTAL  418 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~nA~  418 (451)
                      ........|++  +++|.+++ | ...|++++++++++.+...........++..+..++..|+.+.  ...++..+..+
T Consensus       238 ~~~~~~~pDi~--t~sK~l~~-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~  313 (398)
T PRK03244        238 HQHDGVTPDVV--TLAKGLGG-G-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGE  313 (398)
T ss_pred             hhhhCCCCCEE--EEchhhhC-C-cccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            11112235765  57899984 3 4678888888887776543222222346666666555555433  23455556667


Q ss_pred             HHHHHHHc--CCCeEE
Q 013019          419 RMAEILEA--HPKVLL  432 (451)
Q Consensus       419 ~Lae~L~~--~p~V~~  432 (451)
                      .+.+.|++  +|.+..
T Consensus       314 ~l~~~L~~~~~~~~~~  329 (398)
T PRK03244        314 QLRAGIEALGHPLVDH  329 (398)
T ss_pred             HHHHHHHhcCCCceee
Confidence            77788876  444433

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.70  E-value=1.5e-15  Score=160.52  Aligned_cols=216  Identities=19%  Similarity=0.146  Sum_probs=143.6

Q ss_pred             CchhHHHHH----HHHHhhhCCCc-EE----EeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhh------hc
Q 013019          208 GNPTTVVVE----EKMSALEGAES-TV----IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL------PK  272 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~-~v----v~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l------~~  272 (451)
                      |....+.+|    +++++++|++. .+    .++||++|+.+++.+++++||+|++.+..|++.........      ..
T Consensus        74 g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~  153 (452)
T PTZ00094         74 GNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATS  153 (452)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccce
Confidence            334445555    58999999742 22    23689999999999999999999999999988543221110      01


Q ss_pred             CCcEEEEeC-----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-----cc
Q 013019          273 MGITATVID-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QK  342 (451)
Q Consensus       273 ~Gi~v~~vd-----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-----~~  342 (451)
                      .++++..+.     ..|+++|++++++.++++|++.  .+.+|...|+++|.++||++|+++++|++++.+..     ..
T Consensus       154 ~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~  231 (452)
T PTZ00094        154 IYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPS  231 (452)
T ss_pred             eeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCC
Confidence            112333322     2389999999965347787763  34599999999999999999999999999876543     23


Q ss_pred             cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-----HhhCCCccHHHHHHHHHhhHHH-----HHHHHH
Q 013019          343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGALNPNAAYLIIRGMKTL-----HLRVQQ  412 (451)
Q Consensus       343 pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-----~~~G~~ls~~~a~l~lrgL~tl-----~~Rl~~  412 (451)
                      ++. |+|+++.|++|++.|+.   ||+++.++++.+.+....     ..+.+..++.....+..+++.+     ....++
T Consensus       232 ~~~-~~D~l~~S~hK~l~GP~---Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~  307 (452)
T PTZ00094        232 PFP-YADVVTTTTHKSLRGPR---SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQ  307 (452)
T ss_pred             CCC-CCcEEEcCCccCCCCCC---ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            433 79999999999998885   677777665544332211     1111233333333333444443     234566


Q ss_pred             HHHHHHHHHHHHHcCCCe
Q 013019          413 QNSTALRMAEILEAHPKV  430 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~p~V  430 (451)
                      ..++++.+.+.|.+. ++
T Consensus       308 i~~l~~~l~~~L~~~-g~  324 (452)
T PTZ00094        308 VLKNAKALAAALEKR-GY  324 (452)
T ss_pred             HHHHHHHHHHHHHhC-Cc
Confidence            778899999999775 44

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.70  E-value=1.4e-15  Score=161.95  Aligned_cols=211  Identities=15%  Similarity=0.189  Sum_probs=146.3

Q ss_pred             hHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHH---HH-HHccCCC----eEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          211 TTVVVEEKMSALEGAESTVIM-ASGMSASTVM---LL-ALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       211 t~~~Lee~LA~l~gae~~vv~-sSG~aAi~~a---l~-all~~GD----~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ...++++++++++|.+.+.++ ++|+.+....   +. .++++||    +|+++++.|+.+...    +...|+++..++
T Consensus       114 l~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~----~~~~G~~vv~v~  189 (481)
T PRK04366        114 LMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPAS----AAMAGFKVVEIP  189 (481)
T ss_pred             HHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHH----HHHcCCEEEEee
Confidence            356678999999998665554 5666444332   22 3456776    999999999876643    455788887765


Q ss_pred             C-----CCHHHHHHhhcCCCeEEEEEeCCCCCcccc-ccHHHHHHHHHhcCCEEEEecCCCCC-C-ccccccCCCcEEEE
Q 013019          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-L-NQKALSLGADLVLH  353 (451)
Q Consensus       282 ~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v-~DL~~IaelA~~~g~~lVVD~tfa~~-~-~~~pl~~GaDiVv~  353 (451)
                      .     .|+++|+++++++ +++|++++|+ |+|.+ .|+++|+++||++|+++++|+++... + ...+.++|+|+++.
T Consensus       190 ~~~~~~~D~e~L~~~i~~~-t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~  267 (481)
T PRK04366        190 SNEDGLVDLEALKAAVGED-TAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHL  267 (481)
T ss_pred             cCCCCCcCHHHHHhhcccC-CeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEE
Confidence            3     4789999999874 9999999998 99977 48999999999999999999997532 1 13677889999999


Q ss_pred             CCcccCCccc---cceeEEEEeCHHHHHHHHHH----------------------hHhhCCCccHHHHH--HHHHhhHHH
Q 013019          354 SATKFIGGHN---DVLAGSISGSGKLVTQIRNL----------------------HHVLGGALNPNAAY--LIIRGMKTL  406 (451)
Q Consensus       354 S~SK~l~G~g---dv~gG~Iv~~~eli~~lr~~----------------------~~~~G~~ls~~~a~--l~lrgL~tl  406 (451)
                      |.+|+++++-   .-.+|+++.++++.+++...                      +...+..+....+|  +...|.+.+
T Consensus       268 ~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl  347 (481)
T PRK04366        268 NLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGL  347 (481)
T ss_pred             echhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHH
Confidence            9999987542   12367888888776655210                      00000001112222  333345555


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 013019          407 HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ....+++.++++.+++.|++.
T Consensus       348 ~~~a~~~~~~a~~l~~~L~~~  368 (481)
T PRK04366        348 REVSEDAVLNANYLKARLKDI  368 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhHhh
Confidence            555677788899999999876

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.70  E-value=2e-15  Score=154.69  Aligned_cols=218  Identities=16%  Similarity=0.140  Sum_probs=148.0

Q ss_pred             cCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc---c----CCCeEEEcCCCCcchHHHHHHh-h------
Q 013019          205 GRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETV-L------  270 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all---~----~GD~VIv~~~~Y~~t~~~l~~~-l------  270 (451)
                      .+|.++...+|+++|++++|.+++++++||++|+..++..+.   .    +||+|++.++.|.+........ .      
T Consensus        64 ~~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~  143 (379)
T TIGR00707        64 NLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQK  143 (379)
T ss_pred             cccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhc
Confidence            456788999999999999999999999999999998887552   2    3799999999997643222111 0      


Q ss_pred             --hcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccc-c---cHHHHHHHHHhcCCEEEEecCCCCC-Cccc-
Q 013019          271 --PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC-V---DVKLVSDLCHKKGAIVCIDGTFATP-LNQK-  342 (451)
Q Consensus       271 --~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v-~---DL~~IaelA~~~g~~lVVD~tfa~~-~~~~-  342 (451)
                        .....++.+++..|++++++.++++ +++|+++.++|++|.. .   ++++|.++|+++|+++|+||++... .... 
T Consensus       144 ~~~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~  222 (379)
T TIGR00707       144 GFEPLVPGFSYAPYNDIESLKKAIDDE-TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF  222 (379)
T ss_pred             cCCCCCCCceeeCCCCHHHHHHHhhhC-eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh
Confidence              0111233444555899999999774 8999998776666653 3   4899999999999999999998632 1111 


Q ss_pred             -c---ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHH
Q 013019          343 -A---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  416 (451)
Q Consensus       343 -p---l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~n  416 (451)
                       +   .....|++  +++|.++ .| .+.|++++++++++.++..........++..+..+...|+.+.  ...++..++
T Consensus       223 ~~~~~~~~~~d~~--t~sK~~~-~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~  298 (379)
T TIGR00707       223 FAYEHYGIEPDII--TLAKGLG-GG-VPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEK  298 (379)
T ss_pred             hhHHhcCCCCCEE--EEccccc-CC-cccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence             1   11224554  6899999 44 5689999999988887753322222345666555554444332  234555566


Q ss_pred             HHHHHHHHHcC
Q 013019          417 ALRMAEILEAH  427 (451)
Q Consensus       417 A~~Lae~L~~~  427 (451)
                      .+.+.+.|++.
T Consensus       299 ~~~~~~~l~~~  309 (379)
T TIGR00707       299 GDYFKERLEEL  309 (379)
T ss_pred             HHHHHHHHHHH
Confidence            66676666543

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.70  E-value=3.4e-15  Score=155.70  Aligned_cols=217  Identities=18%  Similarity=0.214  Sum_probs=154.8

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +..|+  ++|+..+||+.+++++|.+.++.++||++|+..+....+++||.|  +.+.|..+....   ....|....-+
T Consensus        64 De~ya--g~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ah---Ie~~Gav~vDi  136 (450)
T TIGR02618        64 DEAYA--GSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYH---QEKNGATFVDI  136 (450)
T ss_pred             chhhc--CCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHH---HHhCCeEEEee
Confidence            34576  889999999999999999999999999999887776778999977  556675544321   12233321111


Q ss_pred             --C-------------CCCHHHHHHhhcCC---CeEEEEEeCCCCCc-ccc---ccHHHHHHHHHhcCCEEEEecCCCC-
Q 013019          281 --D-------------PADMEGLEAALNNN---NVSLFFTESPTNPF-LRC---VDVKLVSDLCHKKGAIVCIDGTFAT-  337 (451)
Q Consensus       281 --d-------------~~D~d~Le~ai~~~---~tklV~lesPsNPt-G~v---~DL~~IaelA~~~g~~lVVD~tfa~-  337 (451)
                        |             ..|+++|+++|+++   ++++|.+++++|.. |.+   .++++|.++|++||++||.|.+... 
T Consensus       137 ~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~g  216 (450)
T TIGR02618       137 IIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVE  216 (450)
T ss_pred             ecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhh
Confidence              1             12799999999863   35688899999966 777   4689999999999999999998432 


Q ss_pred             -C---------Cccccc-------cCCCcEEEECCcccCCccccceeEEEE-eCHHHHHHHHHHhHhhCC-----CccHH
Q 013019          338 -P---------LNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGG-----ALNPN  394 (451)
Q Consensus       338 -~---------~~~~pl-------~~GaDiVv~S~SK~l~G~gdv~gG~Iv-~~~eli~~lr~~~~~~G~-----~ls~~  394 (451)
                       .         +...++       -.++|.++.|+.|..+++   +||+|+ .+++++++++.+...+++     .++..
T Consensus       217 NA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r  293 (450)
T TIGR02618       217 NAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGR  293 (450)
T ss_pred             ChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHHHHhhhcCCccccCchhhh
Confidence             1         222222       225899999999999888   488888 677899999988766533     23333


Q ss_pred             HHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHcC
Q 013019          395 AAYLIIRGMKTLHLR--VQQQNSTALRMAEILEAH  427 (451)
Q Consensus       395 ~a~l~lrgL~tl~~R--l~~~~~nA~~Lae~L~~~  427 (451)
                      +...+..+|+..-.+  .+....+++.|++.|.+.
T Consensus       294 ~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~  328 (450)
T TIGR02618       294 DMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA  328 (450)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC
Confidence            323334455553332  344456799999999887

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK02769 histidine decarboxylase; Provisional

Probab=99.69  E-value=3.2e-15  Score=154.70  Aligned_cols=231  Identities=17%  Similarity=0.135  Sum_probs=157.6

Q ss_pred             cccCCCchhHHHHHHHHHhhhCCC--c--EEEeCCHHHHHHHHHHHH--ccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGAE--S--TVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~gae--~--~vv~sSG~aAi~~al~al--l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      .|++......+++.+++++++|.+  +  .+++++|++++..++.+.  ..++++|++++..|.+....++ .+...+..
T Consensus        58 ~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~-~lg~~~~~  136 (380)
T PRK02769         58 NYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIAR-LLRIKSRV  136 (380)
T ss_pred             CCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHH-HcCCCCce
Confidence            344433344556778889999963  3  466777789887776544  3568899999999998765442 22222222


Q ss_pred             EEEeC--CCCHHHHHHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcC---CEEEEecCCCCCCcc---c--cc
Q 013019          277 ATVID--PADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKG---AIVCIDGTFATPLNQ---K--AL  344 (451)
Q Consensus       277 v~~vd--~~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g---~~lVVD~tfa~~~~~---~--pl  344 (451)
                      +...+  ..|+++|+++++++  +|.+|++..++|++|.+.|+++|+++|+++|   +++++|.+++.+...   .  ++
T Consensus       137 V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~  216 (380)
T PRK02769        137 ITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPF  216 (380)
T ss_pred             eccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccC
Confidence            32222  24899999999763  3889999999999999999999999999998   699999998764321   1  12


Q ss_pred             --cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--------hhCCC--ccHHHHHHHHHh--hHHHHHHH
Q 013019          345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGA--LNPNAAYLIIRG--MKTLHLRV  410 (451)
Q Consensus       345 --~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--------~~G~~--ls~~~a~l~lrg--L~tl~~Rl  410 (451)
                        ..|+|.+..|.||+++++.  ..|+++.+++.++++.....        ..|+.  ......|..++.  .+.+..+.
T Consensus       217 d~~~~vDsis~s~HK~~~~P~--g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~  294 (380)
T PRK02769        217 SFADGIDSIAISGHKFIGSPM--PCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRV  294 (380)
T ss_pred             CccCCCCEEEECCcccCCCCC--CcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHH
Confidence              2389999999999998664  37888887776665432111        12222  133455655543  34566677


Q ss_pred             HHHHHHHHHHHHHHHcCCCeEEEecCC
Q 013019          411 QQQNSTALRMAEILEAHPKVLLLFITL  437 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~p~V~~V~yPg  437 (451)
                      ++..+.++++.+.|++. +++.+..|.
T Consensus       295 ~~~~~la~~l~~~L~~~-g~~~~~~p~  320 (380)
T PRK02769        295 QHCLDMAQYAVDRLQAN-GIPAWRNPN  320 (380)
T ss_pred             HHHHHHHHHHHHHHHhC-CCEEEcCCC
Confidence            88889999999999874 555554443

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.69  E-value=5.1e-16  Score=161.07  Aligned_cols=211  Identities=21%  Similarity=0.309  Sum_probs=144.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      +.....+.|+.+|+++|++.+.+..+|+ .+|.+++++++++||+|++++++|-+.+..+    ...|+...++++    
T Consensus        64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~al----il~ga~Pvyi~p~~~~  139 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNAL----ILSGAIPVYIPPEDNE  139 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHH----HHHTEEEEEEEEEE-T
T ss_pred             CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHH----HHcCCeEEEecCCccc
Confidence            4445778999999999999999999999 8999999999999999999999999877533    334666666542    


Q ss_pred             ------CCH-----HHHHHhhcCC-C---eEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-----cc
Q 013019          283 ------ADM-----EGLEAALNNN-N---VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QK  342 (451)
Q Consensus       283 ------~D~-----d~Le~ai~~~-~---tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-----~~  342 (451)
                            .++     +.|+++|+++ .   .++|++.+|+ ..|.+.|+++|+++||++|++|+|||+++.-+.     ..
T Consensus       140 ~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~  218 (417)
T PF01276_consen  140 YGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT-YYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRS  218 (417)
T ss_dssp             TS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTT
T ss_pred             cCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC-CCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccc
Confidence                  134     8898888753 2   3459998887 789999999999999999999999999876432     23


Q ss_pred             cccCCCc-------EEEECCcccCCccccceeEEEEeCHHH---HHHHHHHhHhhCCCccHHH--HH--HHHHhh-HH-H
Q 013019          343 ALSLGAD-------LVLHSATKFIGGHNDVLAGSISGSGKL---VTQIRNLHHVLGGALNPNA--AY--LIIRGM-KT-L  406 (451)
Q Consensus       343 pl~~GaD-------iVv~S~SK~l~G~gdv~gG~Iv~~~el---i~~lr~~~~~~G~~ls~~~--a~--l~lrgL-~t-l  406 (451)
                      .+.+|+|       ++++|+||.+++..  .+.++-.+.+.   .++++.....+..+.+...  +.  .+.+.+ .. =
T Consensus       219 a~~~gad~~~~~~~~vvqS~HKtL~alt--Qts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G  296 (417)
T PF01276_consen  219 ALALGADRPNDPGIIVVQSTHKTLPALT--QTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEG  296 (417)
T ss_dssp             CSSTTSS-CTSBEEEEEEEHHHHSSS-T--T-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHH
T ss_pred             hhhccCccccccceeeeechhhcccccc--cceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            4567999       99999999999876  56777665442   4667666555544322211  11  111122 11 1


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013019          407 HLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~  425 (451)
                      ...+++..++++.+.+.|+
T Consensus       297 ~~l~~~~i~~a~~~R~~i~  315 (417)
T PF01276_consen  297 RELLEEAIELAEEFRKKIN  315 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            1234566667777777773

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK08637 hypothetical protein; Provisional

Probab=99.67  E-value=2e-14  Score=148.60  Aligned_cols=176  Identities=14%  Similarity=0.155  Sum_probs=117.3

Q ss_pred             CccccCCCchhHHHHHHHHHhhhC-----C--C--cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhh
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEG-----A--E--STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL  270 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~g-----a--e--~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l  270 (451)
                      .+.|+..  .....|++.+++...     .  +  +.+++++|. +++..++.+++++||+|++++|+|+.....+.   
T Consensus        37 ~~~Y~~~--~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~---  111 (388)
T PRK08637         37 IFPYAPP--QGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFN---  111 (388)
T ss_pred             ccCCCCC--CCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH---
Confidence            3455532  224556666665431     1  2  235556655 89999999999999999999999987654332   


Q ss_pred             hcCCcEEEEeCC------CCHHHHHHhhc---CCCeEEEEEeCCCCCcccccc---HHHHHHHHHh-----cCCEEEEec
Q 013019          271 PKMGITATVIDP------ADMEGLEAALN---NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDG  333 (451)
Q Consensus       271 ~~~Gi~v~~vd~------~D~d~Le~ai~---~~~tklV~lesPsNPtG~v~D---L~~IaelA~~-----~g~~lVVD~  333 (451)
                      ...|.++..++.      .|+++++++++   ++..+++++++|+||||.+++   +++|+++|++     ++++||+|+
T Consensus       112 ~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De  191 (388)
T PRK08637        112 TRRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDD  191 (388)
T ss_pred             HhcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence            124666655432      36889988876   223567889999999999986   5667776664     899999999


Q ss_pred             CCCCCCcc----cc-c----cC-CCc--EEEECCcccCCccccceeEEEEe------CHHHHHHHHH
Q 013019          334 TFATPLNQ----KA-L----SL-GAD--LVLHSATKFIGGHNDVLAGSISG------SGKLVTQIRN  382 (451)
Q Consensus       334 tfa~~~~~----~p-l----~~-GaD--iVv~S~SK~l~G~gdv~gG~Iv~------~~eli~~lr~  382 (451)
                      +|......    .+ +    +. +-.  +.+.|+||.++.+| ++.||++.      ++++++++..
T Consensus       192 ~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG-lRlG~~~~~~~~~~~~~l~~~~~~  257 (388)
T PRK08637        192 AYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWG-FRVGFITFGTKAGSSQTVKEALEK  257 (388)
T ss_pred             cchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcc-cceEEEEEccccCCcHHHHHHHHH
Confidence            98643211    11 1    11 111  23459999888777 67888874      3677777654

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.67  E-value=1e-14  Score=151.01  Aligned_cols=215  Identities=19%  Similarity=0.182  Sum_probs=146.3

Q ss_pred             CchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhh---------cCC
Q 013019          208 GNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP---------KMG  274 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~---------~~G  274 (451)
                      .++...+|+++|+++.+  .+.+++++||++|+..++..+.  .++|+|++.++.|.+..........         ...
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  156 (413)
T cd00610          77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLL  156 (413)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence            35778899999999998  6788889999999999998764  5689999999988874432211111         112


Q ss_pred             cEEEEeCCC-----------CHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCC
Q 013019          275 ITATVIDPA-----------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT  337 (451)
Q Consensus       275 i~v~~vd~~-----------D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~  337 (451)
                      .++..++..           |+++|++++++  +++++|+++..+|++|.+.+    +++|.++|+++|+++|+||++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g  236 (413)
T cd00610         157 PGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTG  236 (413)
T ss_pred             CCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence            234445554           78899998875  35788898877778898877    99999999999999999999763


Q ss_pred             C-Ccc-----ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHH--HHHhHhhCCCccHHHHHHHHHhhHHHH--
Q 013019          338 P-LNQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGALNPNAAYLIIRGMKTLH--  407 (451)
Q Consensus       338 ~-~~~-----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~l--r~~~~~~G~~ls~~~a~l~lrgL~tl~--  407 (451)
                      . ...     .......|++  |++|.+++ + .+.|++++++++++.+  ...........++..+..+...++.+.  
T Consensus       237 ~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-g-~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~  312 (413)
T cd00610         237 FGRTGKMFAFEHFGVEPDIV--TLGKGLGG-G-LPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEE  312 (413)
T ss_pred             CCcCcchhhHhhcCCCCCeE--EEcccccC-c-cccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            2 111     1112224554  67899997 4 5678888999888886  222211122345555555444454433  


Q ss_pred             HHHHHHHHHHHHHHHHHHc
Q 013019          408 LRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~  426 (451)
                      ...++..++.+.+.+.|++
T Consensus       313 ~~~~~~~~~~~~l~~~l~~  331 (413)
T cd00610         313 GLLENAAELGEYLRERLRE  331 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            2345555666666666654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.67  E-value=5e-15  Score=152.77  Aligned_cols=216  Identities=17%  Similarity=0.188  Sum_probs=146.1

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCC-------CeEEEcCCCCcchHHHHHHhhh-----
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-------GHIVTTTDCYRKTRIFIETVLP-----  271 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~G-------D~VIv~~~~Y~~t~~~l~~~l~-----  271 (451)
                      ...|.+|...+|+++|+++.+.+.++++++|++|+..++..++..+       ++|++.++.|.+........-.     
T Consensus        75 ~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  154 (396)
T PRK02627         75 SNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQ  154 (396)
T ss_pred             ccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCcccc
Confidence            3456789999999999999988889999999999999998776544       6799999888764322111100     


Q ss_pred             ----cCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc-ccc---cHHHHHHHHHhcCCEEEEecCCCCC-Cccc
Q 013019          272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIVCIDGTFATP-LNQK  342 (451)
Q Consensus       272 ----~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG-~v~---DL~~IaelA~~~g~~lVVD~tfa~~-~~~~  342 (451)
                          .....+..++..|++++++++.+ ++++|++|.++||+| .+.   .+++|.++|++||+++|+||+|... ....
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~  233 (396)
T PRK02627        155 EGFEPLVEGFIYVPFNDIEALKAAITD-KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK  233 (396)
T ss_pred             ccCCCCCCCceEeCCCCHHHHHHhcCC-CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc
Confidence                00112233455689999999976 499999999999998 344   3899999999999999999997632 1111


Q ss_pred             --cc-cCC--CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHH
Q 013019          343 --AL-SLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS  415 (451)
Q Consensus       343 --pl-~~G--aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~  415 (451)
                        +. ..|  .|++  +++|.+++ | .+.|++++++++++.+...........++..+..+...|+.+..  .+++..+
T Consensus       234 ~~~~~~~~~~pdi~--t~sK~~~~-G-~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~  309 (396)
T PRK02627        234 LFAYQHYGIEPDIM--TLAKGLGG-G-VPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAE  309 (396)
T ss_pred             eeeehhcCCCCCEE--EEcchhhC-C-cccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHH
Confidence              11 123  3544  68999984 4 57889999998887775432222334567776666666654432  2334444


Q ss_pred             HHHHHHHHH
Q 013019          416 TALRMAEIL  424 (451)
Q Consensus       416 nA~~Lae~L  424 (451)
                      +.+.+.+.|
T Consensus       310 ~~~~~~~~l  318 (396)
T PRK02627        310 VGEYLRAKL  318 (396)
T ss_pred             HHHHHHHHH
Confidence            444444444

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.67  E-value=2e-14  Score=152.84  Aligned_cols=218  Identities=17%  Similarity=0.093  Sum_probs=143.3

Q ss_pred             CchhHHHHHH----HHHhhhCCC-cEEEe----CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHH--HHHh--hhcCC
Q 013019          208 GNPTTVVVEE----KMSALEGAE-STVIM----ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF--IETV--LPKMG  274 (451)
Q Consensus       208 ~npt~~~Lee----~LA~l~gae-~~vv~----sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~--l~~~--l~~~G  274 (451)
                      |+...+++|+    ...++++.+ ..+++    .||+.|+..++.+++++||+|+..+...++....  ....  +...+
T Consensus        74 G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~  153 (475)
T PLN03226         74 GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATS  153 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccce
Confidence            5667777776    445566654 44544    8999999999999999999999976544443221  1111  11112


Q ss_pred             cEEEE--e--C----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-----c
Q 013019          275 ITATV--I--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----Q  341 (451)
Q Consensus       275 i~v~~--v--d----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-----~  341 (451)
                      ..+..  +  +    ..|+++|++++.+.++++|++. -++ ++...|+++|.++|+++|+++++|+++..++.     .
T Consensus       154 ~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~  231 (475)
T PLN03226        154 IYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG-ASA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAA  231 (475)
T ss_pred             EEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-cCc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC
Confidence            21111  1  1    2389999998875457877662 333 78889999999999999999999998766532     2


Q ss_pred             ccccCCCcEEEECCcccCCccccceeEEEEeCHHHH-----------H---HHHHHh-HhhCCCccHHHHHHHHHhhHHH
Q 013019          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLV-----------T---QIRNLH-HVLGGALNPNAAYLIIRGMKTL  406 (451)
Q Consensus       342 ~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli-----------~---~lr~~~-~~~G~~ls~~~a~l~lrgL~tl  406 (451)
                      .|++ ++|+++.|++|+|.|+.   ||+|+++++++           +   .+.... ..+.+.+++...+.+..+++.+
T Consensus       232 ~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i  307 (475)
T PLN03226        232 SPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA  307 (475)
T ss_pred             CCCC-CCeEEEecCcccccCCC---ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH
Confidence            3443 69999999999998885   78888887543           1   121111 1122334444444444444443


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          407 -----HLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       407 -----~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                           ....++..+|++.|++.|.+ .++.-
T Consensus       308 ~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l  337 (475)
T PLN03226        308 MTPEFKAYQKQVKANAAALANRLMS-KGYKL  337 (475)
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHh-CCCEE
Confidence                 33577888999999999988 45543

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.66  E-value=7.8e-15  Score=151.56  Aligned_cols=214  Identities=18%  Similarity=0.149  Sum_probs=145.0

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH----ccCCC----eEEEcCCCCcchHHHHHHhh--hc----
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL----VPAGG----HIVTTTDCYRKTRIFIETVL--PK----  272 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al----l~~GD----~VIv~~~~Y~~t~~~l~~~l--~~----  272 (451)
                      +.+|...+|+++|+++.+.+.+++++||++|+..++.++    ..+||    +||+.++.|.+........-  ..    
T Consensus        70 ~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~  149 (389)
T PRK01278         70 YRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEG  149 (389)
T ss_pred             cCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhccc
Confidence            457888899999999987788999999999999998776    45676    89999999887532221110  00    


Q ss_pred             C---CcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc----cHHHHHHHHHhcCCEEEEecCCCCC-Cccccc
Q 013019          273 M---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATP-LNQKAL  344 (451)
Q Consensus       273 ~---Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~----DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl  344 (451)
                      +   .-.+..++..|++++++++++ ++++|++|.++|++|...    ++++|.++|++||+++|+||++... .....+
T Consensus       150 ~~~~~~~~~~~~~~d~~~l~~~l~~-~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~  228 (389)
T PRK01278        150 FGPLVPGFDQVPFGDIEALKAAITP-NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF  228 (389)
T ss_pred             CCCCCCCceEeCCCCHHHHHHhhCC-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce
Confidence            0   011233455689999999987 499999998888888433    5899999999999999999997632 111111


Q ss_pred             ---cCC--CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHHHH
Q 013019          345 ---SLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTA  417 (451)
Q Consensus       345 ---~~G--aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA  417 (451)
                         ..|  .|+  .+++|.+++ | .+.|++++++++++.+...........++..+..++..|+.+..  ..++..++.
T Consensus       229 ~~~~~~~~pdi--~t~sK~l~~-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~  304 (389)
T PRK01278        229 AHEWAGVTPDI--MAVAKGIGG-G-FPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMG  304 (389)
T ss_pred             eecccCCCCCE--EEEehhccC-C-cceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence               123  354  478999984 3 46888899988877765443333334567777766666655421  234444445


Q ss_pred             HHHHHHHH
Q 013019          418 LRMAEILE  425 (451)
Q Consensus       418 ~~Lae~L~  425 (451)
                      +.+.+.|+
T Consensus       305 ~~l~~~l~  312 (389)
T PRK01278        305 LYLKQKLE  312 (389)
T ss_pred             HHHHHHHH
Confidence            55555443

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.65  E-value=2.3e-14  Score=148.26  Aligned_cols=216  Identities=19%  Similarity=0.165  Sum_probs=143.8

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc----------CCCeEEEcCCCCcchH-HHHHHhhh-----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRKTR-IFIETVLP-----  271 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~----------~GD~VIv~~~~Y~~t~-~~l~~~l~-----  271 (451)
                      .++....+++.++++.+.+.+++++||++|+..++..+..          .+++|++.+..|.+.. ..+...-.     
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~  150 (400)
T PTZ00125         71 YNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYN  150 (400)
T ss_pred             cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhc
Confidence            3567888999999998888999999999999999886641          3467888887776632 22211100     


Q ss_pred             ---cCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC-Ccccc
Q 013019          272 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LNQKA  343 (451)
Q Consensus       272 ---~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~-~~~~p  343 (451)
                         ...-.+..++..|+++|+++++..++++|++|.++||+|.+.+    +++|.++|++||+++|+||++... .....
T Consensus       151 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~  230 (400)
T PTZ00125        151 NFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKL  230 (400)
T ss_pred             cCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh
Confidence               0011234456678999999996335999999999999999887    999999999999999999997431 11111


Q ss_pred             -----ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHHH
Q 013019          344 -----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST  416 (451)
Q Consensus       344 -----l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~n  416 (451)
                           .....|+++  ++|.+++.. ...|++++++++++.+...........++..+..+...|+.+..  ..++..+.
T Consensus       231 ~~~~~~~~~pd~~~--~sK~l~~g~-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~  307 (400)
T PTZ00125        231 LAHDHEGVKPDIVL--LGKALSGGL-YPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRL  307 (400)
T ss_pred             hHHHhcCCCCCEEE--EcccccCCC-cCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                 112247776  579998642 25788999999888876433222223456666655555554431  12333344


Q ss_pred             HHHHHHHHHc
Q 013019          417 ALRMAEILEA  426 (451)
Q Consensus       417 A~~Lae~L~~  426 (451)
                      .+.+.+.|++
T Consensus       308 ~~~l~~~l~~  317 (400)
T PTZ00125        308 GEVFRDGLKE  317 (400)
T ss_pred             HHHHHHHHHH
Confidence            4444454543

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.65  E-value=4.4e-14  Score=141.70  Aligned_cols=219  Identities=17%  Similarity=0.174  Sum_probs=151.6

Q ss_pred             ccccCCCchhHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcC
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      ..|+  +.......++++|++..        +++.+++++..+||..++.+|.+||..|++++|.|.-..    ..+...
T Consensus        97 N~Ya--ps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~----~~a~~~  170 (447)
T KOG0259|consen   97 NGYA--PSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYD----TRAIYS  170 (447)
T ss_pred             CCcC--CccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHH----Hhhhhc
Confidence            3454  34555667788888742        244555444449999999999999999999999997533    334556


Q ss_pred             CcEEEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-c
Q 013019          274 GITATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-K  342 (451)
Q Consensus       274 Gi~v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-~  342 (451)
                      |++++++|.       .|++.+|+.++++ |.++++.+|+||+|.+++   |++|+++|+++|+++|.||.|...++. +
T Consensus       171 ~lEVR~ydlLPe~~weIDL~~veal~DEN-T~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~  249 (447)
T KOG0259|consen  171 GLEVRYYDLLPEKDWEIDLDGVEALADEN-TVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK  249 (447)
T ss_pred             CceeEeecccCcccceechHHHHHhhccC-eeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC
Confidence            899998874       3899999999885 999999999999999985   889999999999999999998654321 1


Q ss_pred             c---c-cCC---CcEEEECCcccCCccccceeEEEEeC-H-------HHHHHHHHHhHhhCCCccHH--HHHHH----HH
Q 013019          343 A---L-SLG---ADLVLHSATKFIGGHNDVLAGSISGS-G-------KLVTQIRNLHHVLGGALNPN--AAYLI----IR  401 (451)
Q Consensus       343 p---l-~~G---aDiVv~S~SK~l~G~gdv~gG~Iv~~-~-------eli~~lr~~~~~~G~~ls~~--~a~l~----lr  401 (451)
                      |   + .+.   --+.+.+.+|-+--+|++ .||++.. +       ..++.+..   .+.....|-  .+..+    .+
T Consensus       250 pfvpmg~fssiVPVitlggisKrW~VPGWR-lGWi~~hD~~gvf~~~~~~q~~~~---~~~~~~~p~TiiQ~AlP~IL~k  325 (447)
T KOG0259|consen  250 PFVPMGKFSSIVPVITLGGISKRWIVPGWR-LGWIALHDPRGVFRDTKVVQGIKN---FLDIIPGPATIIQGALPDILEK  325 (447)
T ss_pred             CccchhhccccCceEeecccccccccCCce-eeeEEEecccccccchHHHHHHHH---HHhccCCccHhHHHHhHHHHHh
Confidence            1   1 111   247788999988877765 5666543 2       22334443   333332221  11111    11


Q ss_pred             hhHH-HHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          402 GMKT-LHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       402 gL~t-l~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      .-+. +..++.-...|+....++|++.|.+.
T Consensus       326 Tp~efF~k~~~~lk~na~l~y~~Lk~IP~l~  356 (447)
T KOG0259|consen  326 TPEEFFDKKLSFLKSNADLCYSRLKDIPCLT  356 (447)
T ss_pred             ChHHHHHHHHHHHHhhHHHHHHHHhcCCCcc
Confidence            1122 34456667789999999999999876

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.65  E-value=9.2e-15  Score=154.34  Aligned_cols=214  Identities=19%  Similarity=0.168  Sum_probs=149.7

Q ss_pred             CchhHHHH----HHHHHhhhCCCcEEE-eCCHHHHHHHHHHHHccC-------------------------------CCe
Q 013019          208 GNPTTVVV----EEKMSALEGAESTVI-MASGMSASTVMLLALVPA-------------------------------GGH  251 (451)
Q Consensus       208 ~npt~~~L----ee~LA~l~gae~~vv-~sSG~aAi~~al~all~~-------------------------------GD~  251 (451)
                      |+...+.+    .++..+++|++.+-+ .-||+.|+.+++.++++|                               ||+
T Consensus        89 g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~  168 (493)
T PRK13580         89 GCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQR  168 (493)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCE
Confidence            45555554    455666889877655 459999999999999986                               899


Q ss_pred             EEEcCCCCcchHHHHHHhhhcCC--cEEEE--eC----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHH
Q 013019          252 IVTTTDCYRKTRIFIETVLPKMG--ITATV--ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH  323 (451)
Q Consensus       252 VIv~~~~Y~~t~~~l~~~l~~~G--i~v~~--vd----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~  323 (451)
                      |+..+...|+....- ......+  ..+..  +|    ..|.+++++.+++. +++|++...+|. +...|+++|.++|+
T Consensus       169 i~~l~l~~GGHlthg-~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~-~plvii~g~S~~-~~~~dl~~i~eia~  245 (493)
T PRK13580        169 LLGMSLDSGGHLTHG-FRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREF-KPLILVAGYSAY-PRRVNFAKLREIAD  245 (493)
T ss_pred             EEeecCCCCCeeecC-cccchhhheeeeEecccCcccCccCHHHHHHHHhhc-CCEEEEeCcccc-CCCcCHHHHHHHHH
Confidence            999988887742110 0000011  11111  12    24889999999876 666666677776 55889999999999


Q ss_pred             hcCCEEEEecCCCCCCcc--------ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-hhCCCccHH
Q 013019          324 KKGAIVCIDGTFATPLNQ--------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGGALNPN  394 (451)
Q Consensus       324 ~~g~~lVVD~tfa~~~~~--------~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-~~G~~ls~~  394 (451)
                      ++|+++++|++++.++..        .+. .++|+++.|++|++.|+.   ||+|++++++++.+..... .+|+.+.+.
T Consensus       246 ~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT~hKaL~GP~---GG~I~~~~~l~~~L~~a~P~i~gg~l~p~  321 (493)
T PRK13580        246 EVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTTTHKTLRGPR---GGLVLAKKEYADAVDKGCPLVLGGPLPHV  321 (493)
T ss_pred             HcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeCChhhccCCC---eEEEEecHHHHHHHhhCCCcccCCCccHH
Confidence            999999999997665321        233 369999999999998774   8999999999888854432 345555565


Q ss_pred             HHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          395 AAYLIIRGMK----TLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       395 ~a~l~lrgL~----tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      .+..+....+    ....+.++..+|++.|++.|.++.
T Consensus       322 iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G  359 (493)
T PRK13580        322 MAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRG  359 (493)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4443332222    123467888999999999998763

>PRK07505 hypothetical protein; Provisional

Probab=99.65  E-value=3.8e-14  Score=147.29  Aligned_cols=184  Identities=20%  Similarity=0.196  Sum_probs=129.5

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc----cCCC-eEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all----~~GD-~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.++...+|+++|+++.+. +.++++||++|+..++..+.    .+|+ .||+.+..|.++......... .+.++..++
T Consensus        88 ~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~  165 (402)
T PRK07505         88 VRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETID  165 (402)
T ss_pred             hhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeC
Confidence            4567788999999999998 88999999999887775432    2233 355666555554322222222 345777788


Q ss_pred             CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC--------Ccccccc--C-CCcE
Q 013019          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--------LNQKALS--L-GADL  350 (451)
Q Consensus       282 ~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~--------~~~~pl~--~-GaDi  350 (451)
                      ..|+++++++++++ ++++++..|+||+|.+.++++|.++|+++|++||+||+++..        +......  . ...+
T Consensus       166 ~~d~~~l~~~~~~~-~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i  244 (402)
T PRK07505        166 HNDLDALEDICKTN-KTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTI  244 (402)
T ss_pred             CCCHHHHHHHHhcC-CCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeE
Confidence            88999999998764 788888899999999999999999999999999999997421        1111111  1 1247


Q ss_pred             EEECCcccCCccccceeEEEE-eCHHHHHHHHHHhHh--hCCCccHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHV--LGGALNPNAAY  397 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv-~~~eli~~lr~~~~~--~G~~ls~~~a~  397 (451)
                      ++.|++|.+++.    ||+++ .++++++.++.....  ++..+++..+.
T Consensus       245 ~~~s~sK~~~~~----Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~a  290 (402)
T PRK07505        245 IAASLGKAFGAS----GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALG  290 (402)
T ss_pred             EEEechhhhhcc----CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHH
Confidence            778999999876    47766 477888888764432  23344444433

>TIGR01814 kynureninase kynureninase

Probab=99.65  E-value=1.5e-14  Score=150.50  Aligned_cols=159  Identities=18%  Similarity=0.255  Sum_probs=116.5

Q ss_pred             HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCC---eEEEcCCCCcchHHHHHHhhhcCCcEE----EEeCC
Q 013019          212 TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGG---HIVTTTDCYRKTRIFIETVLPKMGITA----TVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD---~VIv~~~~Y~~t~~~l~~~l~~~Gi~v----~~vd~  282 (451)
                      .+.+++ + +++|+  ++.++++|+++++..++.+++++|+   +|++.+..|++....+...+++.|+++    ..++.
T Consensus        73 ~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~  150 (406)
T TIGR01814        73 DESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEP  150 (406)
T ss_pred             hhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEecc
Confidence            344444 4 78886  3455666677999998888876653   688888999986655544456667775    33332


Q ss_pred             -----CCHHHHHHhhc--CCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEEC
Q 013019          283 -----ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (451)
Q Consensus       283 -----~D~d~Le~ai~--~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S  354 (451)
                           .|++++++.++  ..+|++|+++.++|.+|.+.|+++|.++||++|+++++|++++.+. ..+..++|+|+++.|
T Consensus       151 ~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s  230 (406)
T TIGR01814       151 REEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWC  230 (406)
T ss_pred             CCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEc
Confidence                 26788888774  1259999999999999999999999999999999999999987653 233336799999999


Q ss_pred             CcccCCccccceeEEEEeCH
Q 013019          355 ATKFIGGHNDVLAGSISGSG  374 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~  374 (451)
                      .+|+++|+.  .+|+++.++
T Consensus       231 ~hK~l~g~p--G~~l~v~~~  248 (406)
T TIGR01814       231 TYKYLNAGP--GAGAFVHEK  248 (406)
T ss_pred             CccccCCCC--CeEEEEehh
Confidence            999986543  144444443

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.65  E-value=6.6e-15  Score=150.98  Aligned_cols=173  Identities=19%  Similarity=0.240  Sum_probs=141.6

Q ss_pred             HhcccCCccccCCCchhHHHHHHHHHhhhCC--CcEEEeC-CHHHHHHHHHHHHc-cCCC----eEEEcCCCCcchHHHH
Q 013019          195 KEKRRASFEYGRYGNPTTVVVEEKMSALEGA--ESTVIMA-SGMSASTVMLLALV-PAGG----HIVTTTDCYRKTRIFI  266 (451)
Q Consensus       195 ~~~~~~~~~Y~R~~npt~~~Lee~LA~l~ga--e~~vv~s-SG~aAi~~al~all-~~GD----~VIv~~~~Y~~t~~~l  266 (451)
                      +.+.+.. .|++...+..++.|+.+|++.|+  .+ |+|+ ++++++.+++..+. ..+|    |||+....|.+....+
T Consensus        71 ~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~d-IiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~  148 (428)
T KOG1549|consen   71 LGNPHSR-SYGWKAEDAVEAAREQVAKLINADPSD-IVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSC  148 (428)
T ss_pred             hcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCCc-EEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHH
Confidence            3344333 57776777788999999999998  34 5555 45599999998873 3566    9999999999876555


Q ss_pred             HHhhhcCCcEEEEeCC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-Cc
Q 013019          267 ETVLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LN  340 (451)
Q Consensus       267 ~~~l~~~Gi~v~~vd~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~  340 (451)
                       ..++..|+++++++.     .|.+.++++|+++ |++|.+...+|..|.++|+++|.++|++.|+.+++|.+++.+ ..
T Consensus       149 -~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~-T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~  226 (428)
T KOG1549|consen  149 -RALQEEGLEVTYLPVEDSGLVDISKLREAIRSK-TRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIP  226 (428)
T ss_pred             -HHHHhcCeEEEEeccCccccccHHHHHHhcCCC-ceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCcc
Confidence             346667899998864     3789999999985 999999999999999999999999999999999999999876 33


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG  374 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~  374 (451)
                      .+.-++++|++..|.||+++.++   .|+++.++
T Consensus       227 vDV~eln~D~~s~s~HK~ygp~~---iGaLYvr~  257 (428)
T KOG1549|consen  227 VDVQELNADFLSISAHKIYGPPG---IGALYVRR  257 (428)
T ss_pred             ccHHHcCchheeeecccccCCCc---ceEEEEcc
Confidence            45557899999999999999987   78888875

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.64  E-value=7.5e-15  Score=148.26  Aligned_cols=213  Identities=22%  Similarity=0.234  Sum_probs=155.5

Q ss_pred             CchhHHHHH----HHHHhhhCCCcEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe--
Q 013019          208 GNPTTVVVE----EKMSALEGAESTVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--  280 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v--  280 (451)
                      |+...+.+|    +...+|+|++.+-+. .||+.|+.+++++|++|||+|+-.+..+|+....-.. ....|..+..+  
T Consensus        66 Gce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~-v~~sG~~~~~v~Y  144 (413)
T COG0112          66 GCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSP-VNFSGKLFNVVSY  144 (413)
T ss_pred             CCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCC-CCccceeEEeEec
Confidence            556666554    556678899876665 5999999999999999999999999999885422100 11112222221  


Q ss_pred             --C----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCC-----CCCCccccccCCCc
Q 013019          281 --D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQKALSLGAD  349 (451)
Q Consensus       281 --d----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tf-----a~~~~~~pl~~GaD  349 (451)
                        |    ..|.|++++.+.+.++|+|+.-  .+-.-+..|.+++.+||++.|++|++|-++     +.+..++|+.+ +|
T Consensus       145 ~vd~et~~IDyD~~~k~a~e~kPK~ii~G--~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-Ad  221 (413)
T COG0112         145 GVDPETGLIDYDEVEKLAKEVKPKLIIAG--GSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-AD  221 (413)
T ss_pred             ccccccCccCHHHHHHHHHHhCCCEEEEC--ccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cc
Confidence              2    2488999998887789999983  445678899999999999999999999995     45678899998 99


Q ss_pred             EEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCCCccHHH---HH---HHHHhhH-HHHHHHHHHHHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNA---AY---LIIRGMK-TLHLRVQQQNSTALRMA  421 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~~ls~~~---a~---l~lrgL~-tl~~Rl~~~~~nA~~La  421 (451)
                      +|..|+||+|.|+.   ||+|.+++ ++.+++.+.-. .|..-+|..   |.   .+...++ .+....++..+||+.|+
T Consensus       222 vVTtTTHKTlrGPr---GG~Il~~~eel~kkin~aVF-Pg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLA  297 (413)
T COG0112         222 VVTTTTHKTLRGPR---GGIILTNDEELAKKINSAVF-PGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALA  297 (413)
T ss_pred             eEeCCcccCCCCCC---ceEEEeccHHHHHHhhhhcC-CccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence            99999999999995   99999985 78888876432 222223322   11   1222222 23555678889999999


Q ss_pred             HHHHcCC
Q 013019          422 EILEAHP  428 (451)
Q Consensus       422 e~L~~~p  428 (451)
                      +.|.++.
T Consensus       298 e~l~~~G  304 (413)
T COG0112         298 EALKERG  304 (413)
T ss_pred             HHHHHcC
Confidence            9999853

>PLN02271 serine hydroxymethyltransferase

Probab=99.64  E-value=2.3e-14  Score=152.44  Aligned_cols=213  Identities=21%  Similarity=0.166  Sum_probs=147.4

Q ss_pred             CchhHHHHH----HHHHhhhCCCc-----EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHH-----HhhhcC
Q 013019          208 GNPTTVVVE----EKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE-----TVLPKM  273 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~-----~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~-----~~l~~~  273 (451)
                      |+...+++|    ++..+++|.+.     .|-.-||+.|+.+++.++++|||+|+..+..||+......     ......
T Consensus       188 G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~s  267 (586)
T PLN02271        188 GNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGA  267 (586)
T ss_pred             CChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccc
Confidence            556566554    45556778543     2444599999999999999999999999999998654321     112334


Q ss_pred             CcEEEEeC--------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-----c
Q 013019          274 GITATVID--------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----N  340 (451)
Q Consensus       274 Gi~v~~vd--------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-----~  340 (451)
                      |+.+..+.        ..|.++|++.+...++|+|++..-.+|  ...|+++|.++|+++|+++++|.++..++     .
T Consensus       268 G~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~  345 (586)
T PLN02271        268 SIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKEC  345 (586)
T ss_pred             cceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcC
Confidence            55444332        248899998444446999999777777  77899999999999999999999976543     3


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCHH--------------------HHHHHHHHhH--hhCCCccHHHHHH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--------------------LVTQIRNLHH--VLGGALNPNAAYL  398 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e--------------------li~~lr~~~~--~~G~~ls~~~a~l  398 (451)
                      +.|+. ++|+++.|+||+|.|+.   ||+|+.+++                    +.+++.....  ..|+......+.+
T Consensus       346 ~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAal  421 (586)
T PLN02271        346 VNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAAL  421 (586)
T ss_pred             CCCCc-CCcEEEeCCcccCCCCC---ceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHH
Confidence            45655 59999999999999996   788887653                    4444443321  1122221112222


Q ss_pred             HHHhhH-----HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          399 IIRGMK-----TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       399 ~lrgL~-----tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      + -+++     .+....++..+|++.|++.|.++
T Consensus       422 A-valkea~~~efk~Ya~QVv~NAkaLA~~L~~~  454 (586)
T PLN02271        422 A-IALKQVATPEYKAYMQQVKKNAQALASALLRR  454 (586)
T ss_pred             H-HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC
Confidence            1 1222     34566788899999999999887

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.63  E-value=3.4e-14  Score=148.64  Aligned_cols=217  Identities=19%  Similarity=0.235  Sum_probs=150.9

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHH-HHHhhhcCCcE-E
Q 013019          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIF-IETVLPKMGIT-A  277 (451)
Q Consensus       200 ~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~-l~~~l~~~Gi~-v  277 (451)
                      ++..|+  ++|+..+||+.+++++|.++++.++||++|+.+++...+++||.|  +...|..+... +    ...|.. +
T Consensus        70 GDd~Ya--gd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI----~~~Ga~fv  141 (460)
T PRK13237         70 GDEAYA--GSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQ----ELNGGIFV  141 (460)
T ss_pred             cchhhc--CCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHH----HhCCcEEE
Confidence            344576  889999999999999999999999999999998766678999965  54544443322 2    222332 1


Q ss_pred             EEe-------------C-CCCHHHHHHhhcCC---CeEEEEEeCCCCCc-cccc---cHHHHHHHHHhcCCEEEEecCCC
Q 013019          278 TVI-------------D-PADMEGLEAALNNN---NVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCIDGTFA  336 (451)
Q Consensus       278 ~~v-------------d-~~D~d~Le~ai~~~---~tklV~lesPsNPt-G~v~---DL~~IaelA~~~g~~lVVD~tfa  336 (451)
                      ..+             + ..|+++|+++|+++   ++++|.++.++|.. |.+.   ++++|.++|++||++||.|.+..
T Consensus       142 Di~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra  221 (460)
T PRK13237        142 DIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC  221 (460)
T ss_pred             eeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch
Confidence            111             1 13799999999753   35678888889988 5665   78999999999999999999853


Q ss_pred             CC-----------Ccccccc-------CCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhh-C----CCcc
Q 013019          337 TP-----------LNQKALS-------LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL-G----GALN  392 (451)
Q Consensus       337 ~~-----------~~~~pl~-------~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~-G----~~ls  392 (451)
                      .+           +..+++.       ..+|+++.|++|.+..+.   ||+|+.+ +++.++++.+...+ |    +.++
T Consensus       222 ~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~---GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~  298 (460)
T PRK13237        222 VENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI---GGFLAMNDEELFDEAKELVVVYEGMPSYGGMA  298 (460)
T ss_pred             hcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC---ceEEEECCHHHHHHHHHhccccCCCcCCCChh
Confidence            22           3233321       248999999999998863   7888875 57888888775433 2    2333


Q ss_pred             HHHHHHHHHhhHH-HH-HHHHHHHHHHHHHHHHHHcC
Q 013019          393 PNAAYLIIRGMKT-LH-LRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       393 ~~~a~l~lrgL~t-l~-~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .-+...+..||+. +. ..++...++++.|++.|.+.
T Consensus       299 grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~  335 (460)
T PRK13237        299 GRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAA  335 (460)
T ss_pred             hhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHC
Confidence            3232222334432 22 34556667889999999875

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.62  E-value=9.1e-14  Score=142.57  Aligned_cols=213  Identities=18%  Similarity=0.217  Sum_probs=156.5

Q ss_pred             hHHHHHHHHHhhhCCC--cEE-EeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          211 TTVVVEEKMSALEGAE--STV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae--~~v-v~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      ....+.+.|..+++.+  +++ +.+||+.++.+++..+++|||+|++......+  .-+..+++++|.+++.++.     
T Consensus        39 ~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG--~R~~~ia~~~g~~v~~~~~~wg~~  116 (383)
T COG0075          39 IMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFG--ERFAEIAERYGAEVVVLEVEWGEA  116 (383)
T ss_pred             HHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHH--HHHHHHHHHhCCceEEEeCCCCCC
Confidence            3456677778888865  444 45799999999999999999999987755544  3355788899998888763     


Q ss_pred             CCHHHHHHhhcCC-CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCC-CCccccccCCCcEEEECCcccCC
Q 013019          283 ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       283 ~D~d~Le~ai~~~-~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~-~~~~~pl~~GaDiVv~S~SK~l~  360 (451)
                      .|+++++++++++ +.++|.+..--..||...|+++|+++|++||+++|||..-+- ....+.-++|+|+++.+..|.++
T Consensus       117 v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~  196 (383)
T COG0075         117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALG  196 (383)
T ss_pred             CCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhcc
Confidence            4899999999843 466776644445679999999999999999999999998442 34556668999999999999999


Q ss_pred             ccccceeEEEEeCHHHHHHHHHH------------hHhh---CC---CccHHHHHHHHHhhH-----HHHHHHHHHHHHH
Q 013019          361 GHNDVLAGSISGSGKLVTQIRNL------------HHVL---GG---ALNPNAAYLIIRGMK-----TLHLRVQQQNSTA  417 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr~~------------~~~~---G~---~ls~~~a~l~lrgL~-----tl~~Rl~~~~~nA  417 (451)
                      ++.  ..|++..+++.++++...            ...+   +.   +++...-+.+..+|+     .++.|.+||.+++
T Consensus       197 ~PP--Gla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~  274 (383)
T COG0075         197 APP--GLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLA  274 (383)
T ss_pred             CCC--ccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            886  478888888766655422            1122   11   122222232223332     3678899999999


Q ss_pred             HHHHHHHHcC
Q 013019          418 LRMAEILEAH  427 (451)
Q Consensus       418 ~~Lae~L~~~  427 (451)
                      ..+.+.+++.
T Consensus       275 ~a~r~~~~al  284 (383)
T COG0075         275 EALRAGLEAL  284 (383)
T ss_pred             HHHHHHHHHc
Confidence            9999999864

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.61  E-value=9.2e-14  Score=146.01  Aligned_cols=217  Identities=15%  Similarity=0.014  Sum_probs=149.5

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEE--eCCHHHHHHHHHHHHcc--------CC-----CeEEEcCCCCcchHHHHHHhh
Q 013019          210 PTTVVVEEKMSALEGAE----STVI--MASGMSASTVMLLALVP--------AG-----GHIVTTTDCYRKTRIFIETVL  270 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae----~~vv--~sSG~aAi~~al~all~--------~G-----D~VIv~~~~Y~~t~~~l~~~l  270 (451)
                      ...++..+++++++|.+    +.+.  +++|++|+..++.+...        .|     .+|++++..|.+....    +
T Consensus        80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka----~  155 (431)
T TIGR01788        80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKF----A  155 (431)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHH----H
Confidence            33455678899999875    2332  57888999888765431        12     3799999888876543    3


Q ss_pred             hcCCcEEEEeCC------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc------CCEEEEecCCCCC
Q 013019          271 PKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATP  338 (451)
Q Consensus       271 ~~~Gi~v~~vd~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~------g~~lVVD~tfa~~  338 (451)
                      ..+|++++.++.      .|+++|+++|+++ |.+|.+...+|.+|.+.|+++|+++|+++      |+++++|.+++.+
T Consensus       156 ~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~-t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~  234 (431)
T TIGR01788       156 RYFDVELREVPMDPGRYVIDPEQVVEAVDEN-TIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGF  234 (431)
T ss_pred             HHcCceeEEEecCCCceeeCHHHHHHHHhhC-CeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHH
Confidence            445776666542      2789999999875 89999999999999999999999999999      9999999998832


Q ss_pred             C-----ccccc---cCCCcEEEECCcccCCccccceeEEEEeCHH--HHHHHHHHhHhhCC----------Cc--cHHHH
Q 013019          339 L-----NQKAL---SLGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIRNLHHVLGG----------AL--NPNAA  396 (451)
Q Consensus       339 ~-----~~~pl---~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e--li~~lr~~~~~~G~----------~l--s~~~a  396 (451)
                      .     ..-+.   ..++|.+..|.||++.++-  ..|+++.++.  +.+.+.....+++.          ..  .....
T Consensus       235 ~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~--g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~  312 (431)
T TIGR01788       235 IAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYP--GVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQ  312 (431)
T ss_pred             HHHHhCCCchhhcCCCCceEEEECchhccCCCC--CcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHH
Confidence            1     01111   3478999999999985553  2677776543  22222111111111          10  12335


Q ss_pred             HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          397 YLIIRG--MKTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       397 ~l~lrg--L~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      |+.++.  ...+...+++..+.++.+++.|+++|.++-+
T Consensus       313 w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~  351 (431)
T TIGR01788       313 YYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEII  351 (431)
T ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEe
Confidence            665543  3456677888889999999999999887554

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.60  E-value=1.6e-13  Score=142.61  Aligned_cols=216  Identities=13%  Similarity=0.159  Sum_probs=145.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcch-HHHHH--------Hhh
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKT-RIFIE--------TVL  270 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t-~~~l~--------~~l  270 (451)
                      .++...+|+++|+++.+.+.+++++||++|+..++.....        ..++|+..+..|.+. ...+.        ..+
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~  159 (403)
T PRK05093         80 TNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGF  159 (403)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcC
Confidence            4566789999999998878999999999999998875421        234677777766663 32211        001


Q ss_pred             hcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc--c---HHHHHHHHHhcCCEEEEecCCCCC-Cccccc
Q 013019          271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV--D---VKLVSDLCHKKGAIVCIDGTFATP-LNQKAL  344 (451)
Q Consensus       271 ~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~--D---L~~IaelA~~~g~~lVVD~tfa~~-~~~~pl  344 (451)
                      ......+..++..|++++++.+.++ +++|++| |.||+|.+.  +   +++|.++|++||+++|+||++... ...+..
T Consensus       160 ~~~~~~~~~~~~~d~~~l~~~l~~~-~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~  237 (403)
T PRK05093        160 GPKPADITHVPFNDLAAVKAVIDDH-TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF  237 (403)
T ss_pred             CCCCCCcEEeCCCCHHHHHHHhcCC-eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch
Confidence            1112245566777999999999764 9999998 777877654  2   899999999999999999997632 111111


Q ss_pred             ---cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHHHHH
Q 013019          345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALR  419 (451)
Q Consensus       345 ---~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~nA~~  419 (451)
                         ..+.+.-+.|++|.+++ | .++|++++++++++.+...........++..++.++..|+.+.  ...++..++.+.
T Consensus       238 ~~~~~~~~pdi~s~sK~l~~-G-~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~  315 (403)
T PRK05093        238 AYMHYGVTPDILTSAKALGG-G-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQR  315 (403)
T ss_pred             hhhhcCCCCCEEEecccccC-C-cceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence               12222225579999984 4 5789999999988887643222223346666666555555442  234566667777


Q ss_pred             HHHHHHcC
Q 013019          420 MAEILEAH  427 (451)
Q Consensus       420 Lae~L~~~  427 (451)
                      +.+.|++.
T Consensus       316 l~~~L~~~  323 (403)
T PRK05093        316 FVDGLQKI  323 (403)
T ss_pred             HHHHHHHH
Confidence            77777764

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.59  E-value=5.2e-14  Score=159.40  Aligned_cols=213  Identities=17%  Similarity=0.178  Sum_probs=155.8

Q ss_pred             HHHHHHHHhhhCCCcEEEeCCHH----HHHHHHHHHHccC-CC----eEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          213 VVVEEKMSALEGAESTVIMASGM----SASTVMLLALVPA-GG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       213 ~~Lee~LA~l~gae~~vv~sSG~----aAi~~al~all~~-GD----~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      .+++++|+++.|.+.+++.++.+    .|+..++.++.++ ||    +||++...|+.....+    ...|+++.+++. 
T Consensus       571 ~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a----~~~G~~vv~v~~d  646 (993)
T PLN02414        571 EDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASA----AMCGMKIVVVGTD  646 (993)
T ss_pred             HHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHH----HHCCCEEEEeccC
Confidence            57899999999997777766555    6888999999877 88    8999999999876433    336889888764 


Q ss_pred             ----CCHHHHHHhhcC--CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC--CccccccCCCcEEEEC
Q 013019          283 ----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--LNQKALSLGADLVLHS  354 (451)
Q Consensus       283 ----~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~--~~~~pl~~GaDiVv~S  354 (451)
                          .|+++|++++++  ++|++|++.+|+|.+|...|+++|+++||++|+++++|.+...+  ....|.++|+|+++.|
T Consensus       647 ~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s  726 (993)
T PLN02414        647 AKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLN  726 (993)
T ss_pred             CCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEec
Confidence                389999999985  24899999999999999999999999999999999999997543  3456778999999999


Q ss_pred             CcccCCccc---cceeEEEEeCHHHHHHHHHH------------h-HhhCCCc-cHH-------H--HHHHHHhhHHHHH
Q 013019          355 ATKFIGGHN---DVLAGSISGSGKLVTQIRNL------------H-HVLGGAL-NPN-------A--AYLIIRGMKTLHL  408 (451)
Q Consensus       355 ~SK~l~G~g---dv~gG~Iv~~~eli~~lr~~------------~-~~~G~~l-s~~-------~--a~l~lrgL~tl~~  408 (451)
                      .+|+|+++.   .-..|++..++++...+-..            . ...|..- .++       .  +|+...|.+.+..
T Consensus       727 ~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~  806 (993)
T PLN02414        727 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTD  806 (993)
T ss_pred             CCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHH
Confidence            999777442   12368888888765443211            1 0112211 122       1  2333334444544


Q ss_pred             HHHHHHHHHHHHHHHHHcCCC
Q 013019          409 RVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      --++...|+.++++.|+++..
T Consensus       807 ~a~~a~~nAnYl~~rL~~~~~  827 (993)
T PLN02414        807 ASKIAILNANYMAKRLEGHYP  827 (993)
T ss_pred             HHHHHHHHHHHHHHHHHhhCC
Confidence            445566788899998977543

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.59  E-value=3.7e-14  Score=146.67  Aligned_cols=215  Identities=21%  Similarity=0.234  Sum_probs=137.1

Q ss_pred             CchhHHHH----HHHHHhhhCCC----cEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHh-h-----hc
Q 013019          208 GNPTTVVV----EEKMSALEGAE----STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-L-----PK  272 (451)
Q Consensus       208 ~npt~~~L----ee~LA~l~gae----~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~-l-----~~  272 (451)
                      |....+++    ++++.++++++    .+-+ .-||+.|+.+++.+|++|||+|+..+..+|+....-... .     ..
T Consensus        60 G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~  139 (399)
T PF00464_consen   60 GCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASG  139 (399)
T ss_dssp             STHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHH
T ss_pred             CcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhccccccccccccccccccc
Confidence            44555554    56677789988    6655 469999999999999999999999998888743110000 0     00


Q ss_pred             CCcEEEE--eC----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCC-----CCCCcc
Q 013019          273 MGITATV--ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQ  341 (451)
Q Consensus       273 ~Gi~v~~--vd----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tf-----a~~~~~  341 (451)
                      ...++..  +|    ..|.|++++.+++.++++|++..-+  .....|++++.+||++.|++|++|.++     +.+..+
T Consensus       140 ~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~  217 (399)
T PF00464_consen  140 LYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASS--YPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFP  217 (399)
T ss_dssp             HHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SS--TSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS-
T ss_pred             ceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchh--ccCccCHHHHHHHHHhcCcEEEecccccccceehheec
Confidence            1122222  23    2388999998876678999985443  567789999999999999999999995     446778


Q ss_pred             ccccCCCcEEEECCcccCCccccceeEEEEeC--------------HHHHHHHHHHhHhh--CC-CccHHHHHH--HHHh
Q 013019          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGS--------------GKLVTQIRNLHHVL--GG-ALNPNAAYL--IIRG  402 (451)
Q Consensus       342 ~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~--------------~eli~~lr~~~~~~--G~-~ls~~~a~l--~lrg  402 (451)
                      +|++. +|+|..|++|.|.|+.   +|+|..+              +++.+++.+.....  |+ .++...+.+  +...
T Consensus       218 ~P~~~-ADvvt~sThKtl~GPr---ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea  293 (399)
T PF00464_consen  218 NPFPY-ADVVTGSTHKTLRGPR---GGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA  293 (399)
T ss_dssp             -GCCT-SSEEEEESSGGG-SSS----EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH
T ss_pred             Ccccc-ceEEEeeccccccccC---ceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc
Confidence            99987 9999999999999996   9999999              77888887654221  21 122222221  1222


Q ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          403 MK-TLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       403 L~-tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      ++ ....-.++..+||+.|++.|.++.
T Consensus       294 ~~~~fk~Ya~qVv~NAk~La~~L~~~G  320 (399)
T PF00464_consen  294 LSPEFKEYAKQVVKNAKALAEALQERG  320 (399)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            22 345667888999999999999874

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK15029 arginine decarboxylase; Provisional

Probab=99.59  E-value=9e-14  Score=153.68  Aligned_cols=211  Identities=14%  Similarity=0.108  Sum_probs=150.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      +.....+.++..|+++|++.+.+..+|+ .+|.+++++++++||+|++++++|-+.+..    +...|+...++.+    
T Consensus       203 p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~a----l~L~ga~Pvyl~P~~~~  278 (755)
T PRK15029        203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQG----LILTGAKPVYMVPSRNR  278 (755)
T ss_pred             CCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH----HHHcCCeEEEecccccc
Confidence            3444678899999999999999999999 789999999999999999999999887643    3445666666642    


Q ss_pred             ------CC-----HHHHHHhhcCC-CeE--------EEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC----
Q 013019          283 ------AD-----MEGLEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP----  338 (451)
Q Consensus       283 ------~D-----~d~Le~ai~~~-~tk--------lV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~----  338 (451)
                            .+     ++.|+++++++ .++        ++++.+|+ ..|.+.|+++|+++||++|++|+|||+++..    
T Consensus       279 ~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~  357 (755)
T PRK15029        279 YGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFN  357 (755)
T ss_pred             cCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHHHHHHHHHhcCCeEEEECccccccccC
Confidence                  12     78898888543 134        89998887 7899999999999999999999999997652    


Q ss_pred             --Ccc-ccc-----c-CCCc-EEEECCcccCCccccceeEEEEeCHH--H--HHHHHHHhHhhCCCccHHHHHHHHHhh-
Q 013019          339 --LNQ-KAL-----S-LGAD-LVLHSATKFIGGHNDVLAGSISGSGK--L--VTQIRNLHHVLGGALNPNAAYLIIRGM-  403 (451)
Q Consensus       339 --~~~-~pl-----~-~GaD-iVv~S~SK~l~G~gdv~gG~Iv~~~e--l--i~~lr~~~~~~G~~ls~~~a~l~lrgL-  403 (451)
                        +.. .++     . .|+| ++++|+||.+++..  .+.++-.+..  .  .++++.....+.++...   |+++.+| 
T Consensus       358 ~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alT--QaS~LHv~~~~~~id~~r~~~~l~~~qSTSPS---Y~LmASLD  432 (755)
T PRK15029        358 PIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPL---YAICASND  432 (755)
T ss_pred             ccccccccccccccccCCCceEEEEchhhcccchh--hhhhheeCCCccccCHHHHHHHHHHHcCCCcH---HHHHHHHH
Confidence              222 334     3 7898 99999999999775  4566655332  2  24666665555543322   2222222 


Q ss_pred             ------HH--HHHHHHHHHHHHHHHHHHHHcCC
Q 013019          404 ------KT--LHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       404 ------~t--l~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                            +.  -...+++..+.+..+.+.|.+.+
T Consensus       433 ~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~  465 (755)
T PRK15029        433 VAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY  465 (755)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence                  21  12234555666777777776654

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.58  E-value=2.6e-13  Score=139.42  Aligned_cols=223  Identities=18%  Similarity=0.150  Sum_probs=148.9

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc-cCC-CeEEEcCCCCcc-hHHHHHHhhh-c----C---C
Q 013019          206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-PAG-GHIVTTTDCYRK-TRIFIETVLP-K----M---G  274 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all-~~G-D~VIv~~~~Y~~-t~~~l~~~l~-~----~---G  274 (451)
                      .+.++...+|.+++++..+.+.+++++||++|+..++.... -+| ++|++.++.|.+ ++..+...-. .    +   .
T Consensus        67 ~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~  146 (377)
T PRK02936         67 LFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLL  146 (377)
T ss_pred             ccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCC
Confidence            34467777888888887766788889999999999987532 244 568888877765 3322211100 0    0   1


Q ss_pred             cEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc----cHHHHHHHHHhcCCEEEEecCCCCC-Cccccc---cC
Q 013019          275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATP-LNQKAL---SL  346 (451)
Q Consensus       275 i~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~----DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl---~~  346 (451)
                      ..+.+++..|++++++.+.++ +++|++|.+.++.|...    .+++|.++|++||+++|+||++... ....+.   ..
T Consensus       147 ~~~~~~~~~d~~~l~~~~~~~-~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~  225 (377)
T PRK02936        147 PGFTHVPFNDIKALKEVMNEE-VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQF  225 (377)
T ss_pred             CCceEeCCCCHHHHHHhccCC-eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhh
Confidence            133445666899999999764 99999999999887653    3999999999999999999997431 111111   12


Q ss_pred             C--CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHH
Q 013019          347 G--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAE  422 (451)
Q Consensus       347 G--aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~nA~~Lae  422 (451)
                      +  .|++  +++|.+++ | ..+|++++++++.+.+...........++..+..++..|+.+.  ..+++..++...+.+
T Consensus       226 ~~~~di~--t~sK~l~~-G-~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~  301 (377)
T PRK02936        226 GLDPDIV--TVAKGLGN-G-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQ  301 (377)
T ss_pred             CCCCcEE--EEcccccC-C-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3  3554  68999984 4 5688999999888877543322222356777766666666542  345666667777777


Q ss_pred             HHHc----CCCeEEE
Q 013019          423 ILEA----HPKVLLL  433 (451)
Q Consensus       423 ~L~~----~p~V~~V  433 (451)
                      .|++    ++.+..+
T Consensus       302 ~L~~~~~~~~~~~~v  316 (377)
T PRK02936        302 KLQEELEHLECVKNI  316 (377)
T ss_pred             HHHHHHhhCCcEEeE
Confidence            6654    4555443

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.58  E-value=2.6e-13  Score=141.00  Aligned_cols=214  Identities=14%  Similarity=0.135  Sum_probs=140.5

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcch-HHHHHHhh-------
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKT-RIFIETVL-------  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t-~~~l~~~l-------  270 (451)
                      +.++...+|+++|+++.+.+.+++++||++|+..++.....        ..++||..+..|.+. ...+...-       
T Consensus        74 ~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~  153 (397)
T TIGR03246        74 YTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQG  153 (397)
T ss_pred             cCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccC
Confidence            46788889999999999888999999999999999886521        235677777666653 32221110       


Q ss_pred             -hcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccc----ccHHHHHHHHHhcCCEEEEecCCCCCC------
Q 013019          271 -PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC----VDVKLVSDLCHKKGAIVCIDGTFATPL------  339 (451)
Q Consensus       271 -~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v----~DL~~IaelA~~~g~~lVVD~tfa~~~------  339 (451)
                       ......+..++..|++++++++++ ++++|++|.++++.|..    ..+++|.++|++||+++|+||++ +++      
T Consensus       154 ~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~  231 (397)
T TIGR03246       154 FAPLPGGIKHAPYNDLAAAKALISD-KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGEL  231 (397)
T ss_pred             CCCCCCceEEeCCCCHHHHHHHhcc-CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccc
Confidence             011123455677799999999976 49999999766666644    24899999999999999999996 222      


Q ss_pred             -ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHH
Q 013019          340 -NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  416 (451)
Q Consensus       340 -~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~n  416 (451)
                       .........|++  +++|.+++ | ...|++++++++++.++..........+|..+..++..|+.+.  ..+++..++
T Consensus       232 ~a~~~~gv~pDi~--t~~K~lgg-G-~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~  307 (397)
T TIGR03246       232 YAYMHYGVTPDIL--TSAKALGG-G-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQR  307 (397)
T ss_pred             hhhhhcCCCCCEE--EeehhhhC-C-cceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence             111112234665  68999974 3 4678888898888777533221111235555544444444332  234555566


Q ss_pred             HHHHHHHHHc
Q 013019          417 ALRMAEILEA  426 (451)
Q Consensus       417 A~~Lae~L~~  426 (451)
                      .+.+.+.|++
T Consensus       308 ~~~l~~~L~~  317 (397)
T TIGR03246       308 HDLFVDGLEK  317 (397)
T ss_pred             HHHHHHHHHH
Confidence            6667666654

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.55  E-value=3.9e-13  Score=151.45  Aligned_cols=175  Identities=15%  Similarity=0.074  Sum_probs=127.7

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--Cc-EEEeCC-HHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ES-TVIMAS-GMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~-~vv~sS-G~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      .++......++.++.+++++|+  ++ .++|++ +++|+.+++.++ +++||+|+++...|.+...+. ..+++.|+++.
T Consensus        72 ~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~-~~a~~~G~~v~  150 (805)
T PLN02724         72 SSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIR-EYALEKGAAAI  150 (805)
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHH-HHHHHcCCeEE
Confidence            3444455677889999999997  33 456665 559999888877 688999999988898766443 55667799888


Q ss_pred             EeCCC-------------C--HHHHHHhhc---------CCCeEEEEEeCCCCCccccccHHHHHHHHHhc--------C
Q 013019          279 VIDPA-------------D--MEGLEAALN---------NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--------G  326 (451)
Q Consensus       279 ~vd~~-------------D--~d~Le~ai~---------~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--------g  326 (451)
                      +++..             +  .++|++.++         ..++++|.+...+|.+|.+.|++.|.++++..        +
T Consensus       151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~  230 (805)
T PLN02724        151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR  230 (805)
T ss_pred             eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence            87643             1  144555431         12478999999999999999999775555432        3


Q ss_pred             CEEEEecCCCCCCc-cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHH
Q 013019          327 AIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR  381 (451)
Q Consensus       327 ~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr  381 (451)
                      +++++|.+++.+.. .+.-++|+|+++.|++|+++|+.  ..|+++.++++++++.
T Consensus       231 ~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~--G~G~L~vr~~~~~~l~  284 (805)
T PLN02724        231 WMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPT--GLGALLVRRDAAKLLK  284 (805)
T ss_pred             eEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCC--CceEEEEehhhhhhhc
Confidence            57999999765532 23335789999999999999664  3788888888777655

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.55  E-value=1.2e-12  Score=135.95  Aligned_cols=217  Identities=19%  Similarity=0.175  Sum_probs=147.2

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc---------C-CCeEEEcCCCCcc-hHHHHHHhh-----h
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------A-GGHIVTTTDCYRK-TRIFIETVL-----P  271 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~---------~-GD~VIv~~~~Y~~-t~~~l~~~l-----~  271 (451)
                      ..+...+|+++|+++.|.+.+++++||++|+..++..+..         + .++|+..+..|.+ +...+...-     .
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~  156 (401)
T TIGR01885        77 YNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRT  156 (401)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccc
Confidence            5677889999999999988999999999999999886522         3 3567778878765 333332110     0


Q ss_pred             cCC---cEEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC-Ccc
Q 013019          272 KMG---ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LNQ  341 (451)
Q Consensus       272 ~~G---i~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~-~~~  341 (451)
                      .++   ..+..++..|+++|++++++  .++.+|++|.+.+++|.+.+    +++|.++|++||+++|+||++... ...
T Consensus       157 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G  236 (401)
T TIGR01885       157 NFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG  236 (401)
T ss_pred             ccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc
Confidence            112   12344566789999988852  24889999999999999886    999999999999999999996321 111


Q ss_pred             cc-----ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHH
Q 013019          342 KA-----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQN  414 (451)
Q Consensus       342 ~p-----l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~  414 (451)
                      ..     .....|+++  ++|.+++.+ ...|++++++++++.++..........++..+..++..|+.+..  ..++..
T Consensus       237 ~~~~~~~~~~~~di~~--~gK~l~~g~-~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~  313 (401)
T TIGR01885       237 KLLCVDHENVKPDIVL--LGKALSGGV-YPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAE  313 (401)
T ss_pred             hhhHHhhcCCCCCEEE--eeccccCCC-CCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHH
Confidence            11     123467776  569998643 34678888888888775422211112346666555556655542  234555


Q ss_pred             HHHHHHHHHHHcC
Q 013019          415 STALRMAEILEAH  427 (451)
Q Consensus       415 ~nA~~Lae~L~~~  427 (451)
                      +.+..+.+.|++.
T Consensus       314 ~~~~~~~~~L~~l  326 (401)
T TIGR01885       314 KLGEIFRDQLKKL  326 (401)
T ss_pred             HHHHHHHHHHHhc
Confidence            6677777778765

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.54  E-value=3.6e-13  Score=147.79  Aligned_cols=211  Identities=14%  Similarity=0.142  Sum_probs=146.4

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC------
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~------  282 (451)
                      -...+.|+..|+++|++.+.++.+|+ .++.+++++++++||.|++++++|-+.+..   .+-..|....++.+      
T Consensus       174 G~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hg---aLiLsGa~PVYl~P~~n~~G  250 (720)
T PRK13578        174 GAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHG---ALIQAGATPVYLETARNPFG  250 (720)
T ss_pred             hHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHH---HHHHcCCeEEEeeccccccC
Confidence            34677899999999999999999998 789999999999999999999999886642   12334666555432      


Q ss_pred             ----CC-----HHHHHHhhcCC---------CeEEEEEeCCCCCccccccHHHHHHH-HHhcCCEEEEecCCCCCCcc--
Q 013019          283 ----AD-----MEGLEAALNNN---------NVSLFFTESPTNPFLRCVDVKLVSDL-CHKKGAIVCIDGTFATPLNQ--  341 (451)
Q Consensus       283 ----~D-----~d~Le~ai~~~---------~tklV~lesPsNPtG~v~DL~~Iael-A~~~g~~lVVD~tfa~~~~~--  341 (451)
                          .+     .+.|+++|+++         +.+++++.+|+ ..|.+.|++.|+++ +|.++ +|++|++|+.....  
T Consensus       251 i~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p  328 (720)
T PRK13578        251 FIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIP  328 (720)
T ss_pred             CcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCc
Confidence                13     45588888653         15899998887 78999999999999 68888 99999997653211  


Q ss_pred             -------ccccCCCc----EEEECCcccCCccccceeEEEEeCHHHH---------HHHHHHhHhhCCCccHHHHHHHHH
Q 013019          342 -------KALSLGAD----LVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLGGALNPNAAYLIIR  401 (451)
Q Consensus       342 -------~pl~~GaD----iVv~S~SK~l~G~gdv~gG~Iv~~~eli---------~~lr~~~~~~G~~ls~~~a~l~lr  401 (451)
                             ..+++|+|    ++++|+||.+++..  .+.+|-.+...+         ++++.....+.++ ||.  |+++.
T Consensus       329 ~~~~~p~~al~~GaD~p~i~v~QStHKtL~alT--QaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qST-SPs--Y~LmA  403 (720)
T PRK13578        329 MMADCSPLLLELNENDPGIFVTQSVHKQQAGFS--QTSQIHKKDNHIKGQARYCPHKRLNNAFMLHAST-SPF--YPLFA  403 (720)
T ss_pred             ccccCChhhhhcCCCCCCeEEEEChhhcchhhh--hHhhhhcCCcccccccccCCHHHHHHHHHHHcCC-ChH--HHHHH
Confidence                   23567999    99999999999876  456665544332         4566555555443 221  22222


Q ss_pred             hhHH---------HHHHHHHHHHHHHHHHHHH-HcCCCe
Q 013019          402 GMKT---------LHLRVQQQNSTALRMAEIL-EAHPKV  430 (451)
Q Consensus       402 gL~t---------l~~Rl~~~~~nA~~Lae~L-~~~p~V  430 (451)
                      +|+.         -...+++..+.+..+.+.| +..+.+
T Consensus       404 SLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~  442 (720)
T PRK13578        404 ALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLI  442 (720)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            2211         1122455566677777766 555554

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.53  E-value=7.9e-13  Score=127.65  Aligned_cols=218  Identities=16%  Similarity=0.224  Sum_probs=159.8

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~----  283 (451)
                      ..|....+-+.|++++|.+.+-++...-+|-++++.+++++||-|++...+|..++.    .+++.|+.+..++..    
T Consensus        59 ~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyv----AAEragl~v~eVp~tg~Pe  134 (382)
T COG1103          59 TKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYV----AAERAGLNVAEVPNTGYPE  134 (382)
T ss_pred             cCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHH----HHHhcCCeEEecCCCCCCc
Confidence            357777887779999998766555444499999999999999999999999998874    345678888777632    


Q ss_pred             ---CHHHHHHhhc----C--CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEE
Q 013019          284 ---DMEGLEAALN----N--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLH  353 (451)
Q Consensus       284 ---D~d~Le~ai~----~--~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~  353 (451)
                         +++...+.|+    +  .++.+.++..|....|.+.|-+.++++|+++|+++++..+|..+. ..+..+.|+|+++.
T Consensus       135 y~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVg  214 (382)
T COG1103         135 YKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVG  214 (382)
T ss_pred             eEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEe
Confidence               4555444443    2  247899999999999999999999999999999999999997652 33445789999999


Q ss_pred             CCcccCCccccceeEEEEeCHHHHHHHHHHh---------HhhCCCccHHHHHHHHHhhHHHHHHHHH---HHHHHHHHH
Q 013019          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLH---------HVLGGALNPNAAYLIIRGMKTLHLRVQQ---QNSTALRMA  421 (451)
Q Consensus       354 S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~---------~~~G~~ls~~~a~l~lrgL~tl~~Rl~~---~~~nA~~La  421 (451)
                      |.||.++..+  ..|++..++++.+.+-+..         ..+|++.-......++..+.....|+++   -.++++.+.
T Consensus       215 SGHKsmAAs~--PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv  292 (382)
T COG1103         215 SGHKSMAASA--PIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFV  292 (382)
T ss_pred             cCccchhccC--CeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998765  5899999999887754322         1345443222222333445555555444   456788888


Q ss_pred             HHHHcCCCeE
Q 013019          422 EILEAHPKVL  431 (451)
Q Consensus       422 e~L~~~p~V~  431 (451)
                      +.|++..+|+
T Consensus       293 ~elEkigg~~  302 (382)
T COG1103         293 AELEKIGGVK  302 (382)
T ss_pred             HHHHHhhhHH
Confidence            8887765443

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.53  E-value=1.2e-12  Score=136.37  Aligned_cols=214  Identities=14%  Similarity=0.155  Sum_probs=142.8

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcchHHHHHHhhhc------
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVLPK------  272 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t~~~l~~~l~~------  272 (451)
                      +.++...+|+++|+++.+.+.+++++||++|+..++.....        ...+|+..+..|.+........-..      
T Consensus        78 ~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~  157 (406)
T PRK12381         78 YTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQD  157 (406)
T ss_pred             cCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccC
Confidence            45777889999999998878899999999999999876421        3467888888887743211111000      


Q ss_pred             C---CcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccc-----ccHHHHHHHHHhcCCEEEEecCCCCC-Ccccc
Q 013019          273 M---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC-----VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKA  343 (451)
Q Consensus       273 ~---Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v-----~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~p  343 (451)
                      +   .-.+..++..|++++++.+++ ++++|++| |.|++|-+     ..+++|.++|++||+++|+||++... .....
T Consensus       158 ~~~~~~~~~~~~~~d~~~l~~~l~~-~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~  235 (406)
T PRK12381        158 FAPLPPDIRHAAYNDLNSASALIDD-QTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGEL  235 (406)
T ss_pred             CCCCCCCeeEeCCCCHHHHHHhccC-CeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcch
Confidence            0   012344566789999999976 48999997 88888764     24899999999999999999997321 11111


Q ss_pred             -----ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHHH
Q 013019          344 -----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST  416 (451)
Q Consensus       344 -----l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~n  416 (451)
                           ...-.|+  .+++|.+++ | .+.|++++++++++.+...........++..+..++..|+.+..  .+++..++
T Consensus       236 ~~~~~~~v~pDi--~t~sK~l~g-G-~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~  311 (406)
T PRK12381        236 YAYMHYGVTPDV--LTTAKALGG-G-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQR  311 (406)
T ss_pred             hhhHhhCCCCCE--EEehhhhhC-C-CceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence                 1122455  578999974 3 46888899999888776432222223466666655555544432  34555566


Q ss_pred             HHHHHHHHHc
Q 013019          417 ALRMAEILEA  426 (451)
Q Consensus       417 A~~Lae~L~~  426 (451)
                      .+.+.+.|++
T Consensus       312 ~~~l~~~L~~  321 (406)
T PRK12381        312 HDWFVERLNT  321 (406)
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.53  E-value=6.4e-13  Score=134.45  Aligned_cols=196  Identities=20%  Similarity=0.242  Sum_probs=131.4

Q ss_pred             CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-------CCHHHHHHhhcC----
Q 013019          226 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN----  294 (451)
Q Consensus       226 e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-------~D~d~Le~ai~~----  294 (451)
                      +..++++.+++|+.++...|..|||..+++.|.|++.-+-+   -=+.|+++..+..       .+.++||+++++    
T Consensus       147 ~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl---~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~  223 (471)
T KOG0256|consen  147 ERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDL---RWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKL  223 (471)
T ss_pred             cceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccc---eeccCceEEEEEeecCCCccccHHHHHHHHHHHHHh
Confidence            45666667779999999999999999999999999853222   2245787766632       257788777753    


Q ss_pred             -CCeEEEEEeCCCCCccccccH---HHHHHHHHhcCCEEEEecCCCCCCcccc-----c--------cCCCcEEEECCcc
Q 013019          295 -NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQKA-----L--------SLGADLVLHSATK  357 (451)
Q Consensus       295 -~~tklV~lesPsNPtG~v~DL---~~IaelA~~~g~~lVVD~tfa~~~~~~p-----l--------~~GaDiVv~S~SK  357 (451)
                       .++|.|++.+|+||.|...+-   ..+.++|.++|+.||+||.|+.-++.++     +        ...-.-++.|+||
T Consensus       224 ~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSK  303 (471)
T KOG0256|consen  224 GLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSK  303 (471)
T ss_pred             CCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEecc
Confidence             368999999999999999874   5566677899999999999875433221     1        1112257889999


Q ss_pred             cCCccccceeEEEEeCHH-HHHHHHHHhHhhCCCccHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHcC
Q 013019          358 FIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~e-li~~lr~~~~~~G~~ls~~~a~l~lrgL~t-------l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      -+|.+| .+.|+|....+ ++...+++. .+|. +++...+++..-|..       +.+.-+|....-+.+.+.|++.
T Consensus       304 D~GlpG-fRvGviYS~ne~VvsaA~kms-sf~~-vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l  378 (471)
T KOG0256|consen  304 DFGLPG-FRVGVIYSNNEDVVSAATKMS-SFGL-VSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL  378 (471)
T ss_pred             ccCCCc-eEEEEEEecChHHHHHHHHHh-hccC-CcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence            999988 67899988654 555555544 3443 455555544333221       1222333344445566666654

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.52  E-value=2.8e-14  Score=144.42  Aligned_cols=210  Identities=21%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCC---CCcchHHHHHHhhhcCCcEEEEeCC---CCHHH
Q 013019          214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTD---CYRKTRIFIETVLPKMGITATVIDP---ADMEG  287 (451)
Q Consensus       214 ~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~---~Y~~t~~~l~~~l~~~Gi~v~~vd~---~D~d~  287 (451)
                      .+++.++.+.|+++++++++.++|+.+++.++. +|.+||++..   .+|+.++.- .+++.-|..+..+-.   ..+++
T Consensus        51 ~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip-~vm~~sGa~lvEVGttN~t~~~D  128 (367)
T PF03841_consen   51 HVEELLCELTGAEAALVVNNNAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIP-DVMRQSGARLVEVGTTNRTHLSD  128 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            478889999999999999999999999888775 4778888763   355554432 455556766555533   34789


Q ss_pred             HHHhhcCCCeEEEEEeCCCCCccc----cccHHHHHHHHHhcCCEEEEecCCC------------CCCccccccCCCcEE
Q 013019          288 LEAALNNNNVSLFFTESPTNPFLR----CVDVKLVSDLCHKKGAIVCIDGTFA------------TPLNQKALSLGADLV  351 (451)
Q Consensus       288 Le~ai~~~~tklV~lesPsNPtG~----v~DL~~IaelA~~~g~~lVVD~tfa------------~~~~~~pl~~GaDiV  351 (451)
                      ++++|+++ |.+|+--.++|....    ..+++++++++|+||+++++|-.-+            .|-.++.++.|+|+|
T Consensus       129 ye~AI~e~-Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV  207 (367)
T PF03841_consen  129 YEKAITEN-TAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV  207 (367)
T ss_dssp             ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred             cccccccc-ccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence            99999985 888877678887432    3589999999999999999998631            123345577899999


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----------------HHHHHHHHHHH
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----------------TLHLRVQQQNS  415 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----------------tl~~Rl~~~~~  415 (451)
                      ++|..|.++|+.   +|+|+|++++++++++....-...++-.....+...|+                .+....+...+
T Consensus       208 ~fSGdKlLGGPQ---aGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~  284 (367)
T PF03841_consen  208 TFSGDKLLGGPQ---AGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRA  284 (367)
T ss_dssp             EEETTSSSSS-S----EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------
T ss_pred             EEECCCcCCCCC---eEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence            999999999997   89999999999999864433233333333222222222                22333555666


Q ss_pred             HHHHHHHHHHcCCC
Q 013019          416 TALRMAEILEAHPK  429 (451)
Q Consensus       416 nA~~Lae~L~~~p~  429 (451)
                      .|++|++.|++...
T Consensus       285 rA~~l~~~l~~~~~  298 (367)
T PF03841_consen  285 RAERLAAQLKAALG  298 (367)
T ss_dssp             --------------
T ss_pred             cccccccccccccc
Confidence            78888887776544

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PLN02263 serine decarboxylase

Probab=99.50  E-value=3.3e-12  Score=134.65  Aligned_cols=222  Identities=16%  Similarity=0.137  Sum_probs=157.4

Q ss_pred             CccccCCCc---hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhhh
Q 013019          201 SFEYGRYGN---PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLP  271 (451)
Q Consensus       201 ~~~Y~R~~n---pt~~~Lee~LA~l~gae----~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l~  271 (451)
                      .+.++-|+-   ..-.++-+++++++|.+    ..+++++|++++..++.+...  +...+++++..|.+..    +.+.
T Consensus       121 p~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~----KAa~  196 (470)
T PLN02263        121 PFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVF----KAAR  196 (470)
T ss_pred             ccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHH----HHHH
Confidence            355554422   22334667788888852    378888999999888876543  2346888888887755    4555


Q ss_pred             cCCcEEEEeCC-----CCHHHHHHhhcCCC--eEEEEEeCCCCCccccccHHHHHHHHHhcCC-----EEEEecCCCCCC
Q 013019          272 KMGITATVIDP-----ADMEGLEAALNNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGA-----IVCIDGTFATPL  339 (451)
Q Consensus       272 ~~Gi~v~~vd~-----~D~d~Le~ai~~~~--tklV~lesPsNPtG~v~DL~~IaelA~~~g~-----~lVVD~tfa~~~  339 (451)
                      .+|++++.++.     .|+++|+++|.++.  +-+|+...++-++|.+.||++|.++|+++|+     |++||.+|+..+
T Consensus       197 llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~  276 (470)
T PLN02263        197 MYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLM  276 (470)
T ss_pred             hcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhH
Confidence            66777766653     48999999997542  4567777788899999999999999999997     999999986532


Q ss_pred             c---cc--cc--cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--------hhCCCc--cHHHHHHHHH-
Q 013019          340 N---QK--AL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--------VLGGAL--NPNAAYLIIR-  401 (451)
Q Consensus       340 ~---~~--pl--~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--------~~G~~l--s~~~a~l~lr-  401 (451)
                      .   ..  .+  ..++|-+..+.|||++.+-  .+|++..+++.++.+.....        ..|...  .+...|..++ 
T Consensus       277 lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~--~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~  354 (470)
T PLN02263        277 MPFVKRAPKVTFKKPIGSVSVSGHKFVGCPM--PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNR  354 (470)
T ss_pred             hhhcccccccCCCcCccEEEECCccccCCCc--CEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHH
Confidence            2   11  11  2248999999999998775  47888877655543322111        122222  2466777665 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          402 -GMKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       402 -gL~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                       |.+.+..++++..++|+.+.+.|++++
T Consensus       355 ~G~~G~~~~i~~~~~~A~~l~~~l~~~g  382 (470)
T PLN02263        355 KGYRGFQKEVQKCLRNAHYLKDRLREAG  382 (470)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             567888999999999999999999874

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.49  E-value=1.6e-12  Score=146.04  Aligned_cols=217  Identities=14%  Similarity=0.138  Sum_probs=151.4

Q ss_pred             HHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          213 VVVEEKMSALEGAESTVIM-ASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       213 ~~Lee~LA~l~gae~~vv~-sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      .+++++|+++.|-+.+-++ ++|+.+..+.++++..        ..+.|+++...|+.....    +...|++++.++. 
T Consensus       533 ~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPas----a~~~G~~Vv~V~~d  608 (939)
T TIGR00461       533 AQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPAS----AAMAGMQVVPVNCD  608 (939)
T ss_pred             HHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHH----HHHCCCEEEEeccC
Confidence            4678999999998765554 4555666655555532        235799999999887643    4556888888764 


Q ss_pred             ----CCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc-HHHHHHHHHhcCCEEEEecCCCC--CCccccccCCCcEEEE
Q 013019          283 ----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLH  353 (451)
Q Consensus       283 ----~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D-L~~IaelA~~~g~~lVVD~tfa~--~~~~~pl~~GaDiVv~  353 (451)
                          .|+++|++++++  .++++|++.+|+| +|.+.+ +++|+++||++|.++++|.+...  ....+|.++|+|+++.
T Consensus       609 ~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~  687 (939)
T TIGR00461       609 QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHL  687 (939)
T ss_pred             CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEe
Confidence                389999999974  3599999999999 788877 99999999999999999999743  2345677899999999


Q ss_pred             CCcccCCccc---cceeEEEEeCHHHHHHHHH--H-h--------HhhCCC--------ccHHHHH--HHHHhhHHHHHH
Q 013019          354 SATKFIGGHN---DVLAGSISGSGKLVTQIRN--L-H--------HVLGGA--------LNPNAAY--LIIRGMKTLHLR  409 (451)
Q Consensus       354 S~SK~l~G~g---dv~gG~Iv~~~eli~~lr~--~-~--------~~~G~~--------ls~~~a~--l~lrgL~tl~~R  409 (451)
                      |.+|+|+++.   .-..|++.+++++...+-.  . .        ...|..        +-...+|  +.+.|-+.+..-
T Consensus       688 s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~  767 (939)
T TIGR00461       688 NLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKA  767 (939)
T ss_pred             cCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHH
Confidence            9999776321   1236899888765443220  0 0        001111        1112233  334455666666


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEecCC
Q 013019          410 VQQQNSTALRMAEILEAHPKVLLLFITL  437 (451)
Q Consensus       410 l~~~~~nA~~Lae~L~~~p~V~~V~yPg  437 (451)
                      .+....||.++++.|+++.   .+.|++
T Consensus       768 a~~ailnAnYl~~rL~~~~---~~l~~~  792 (939)
T TIGR00461       768 SVVAILNANYMATRLKDHY---PILFVG  792 (939)
T ss_pred             HHHHHHHHHHHHHHhhccC---cccccC
Confidence            6777889999999998864   344554

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.49  E-value=1.1e-12  Score=132.24  Aligned_cols=210  Identities=19%  Similarity=0.219  Sum_probs=154.0

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      -....||++||+|.+.+.+++|+|..-|+...|..|-  -||=+|..+...|.+...    -.+.-+++-.++..+|++.
T Consensus       216 ~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~----GIrns~v~K~IFrHND~~h  291 (570)
T KOG1360|consen  216 KHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQ----GIRNSRVPKHIFRHNDLDH  291 (570)
T ss_pred             chhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHH----HhhhcCCcceeeccCCHHH
Confidence            4467899999999999999999999988888777664  356666665555544332    2344466555567788999


Q ss_pred             HHHhhcC---CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--------cc-ccCCCcEEEECC
Q 013019          288 LEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--------KA-LSLGADLVLHSA  355 (451)
Q Consensus       288 Le~ai~~---~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--------~p-l~~GaDiVv~S~  355 (451)
                      |++.++.   ..+|+|-+|+.++..|.+.||++|++++|++|++..+||.++.++..        ++ +-.-.||+..++
T Consensus       292 L~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTL  371 (570)
T KOG1360|consen  292 LEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTL  371 (570)
T ss_pred             HHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccch
Confidence            9888864   24799999999999999999999999999999999999997654322        11 112368999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHh---hHHHH--HHHHHHHHHHHHHHHHHHcC
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRG---MKTLH--LRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrg---L~tl~--~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .|.||.-    ||||++...+++-+|.+...  +...+.|....-++..   |+.-+  ...+++++|.+.+.+.|.+.
T Consensus       372 gKafGcV----GGYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~  446 (570)
T KOG1360|consen  372 GKAFGCV----GGYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL  446 (570)
T ss_pred             hhhcccc----cceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence            9999864    79999999999999987643  3456666543333333   33221  12355678888888888764

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.49  E-value=5.2e-12  Score=135.62  Aligned_cols=203  Identities=17%  Similarity=0.132  Sum_probs=135.0

Q ss_pred             EEEeCCHHHHHHHHHHHHcc--------------------------CCCeEEEcCCCCcchHHHHHHhhhcCCc---EEE
Q 013019          228 TVIMASGMSASTVMLLALVP--------------------------AGGHIVTTTDCYRKTRIFIETVLPKMGI---TAT  278 (451)
Q Consensus       228 ~vv~sSG~aAi~~al~all~--------------------------~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi---~v~  278 (451)
                      .+++++|++|+..++.+...                          ++.+|++++..|.+..+.    +..+|+   .++
T Consensus       162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~ka----a~~lglg~~~v~  237 (522)
T TIGR03799       162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKA----ADVLGIGRDNLI  237 (522)
T ss_pred             eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHH----HHHcCCCcccEE
Confidence            67788888888887765321                          134688888888876533    334444   455


Q ss_pred             EeCC-----CCHHHHHHhhcC---CCeEEEEEe--CCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc-----
Q 013019          279 VIDP-----ADMEGLEAALNN---NNVSLFFTE--SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-----  343 (451)
Q Consensus       279 ~vd~-----~D~d~Le~ai~~---~~tklV~le--sPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p-----  343 (451)
                      .++.     .|+++|+++|++   .+++.+.+.  ..++.+|.+.|+++|+++|+++|++++||.+++.+....+     
T Consensus       238 ~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~  317 (522)
T TIGR03799       238 AIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL  317 (522)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH
Confidence            4432     489999998852   124444433  5566899999999999999999999999999886432221     


Q ss_pred             cc--CCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhh--------------CCC-ccHHHHHHHHHhh--
Q 013019          344 LS--LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------GGA-LNPNAAYLIIRGM--  403 (451)
Q Consensus       344 l~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~--------------G~~-ls~~~a~l~lrgL--  403 (451)
                      +.  .++|.++.|.||++.++-  .+|+++.+ +++.+.+.....++              |+. ......|..++.+  
T Consensus       318 l~gle~aDSit~d~HK~l~~P~--g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~  395 (522)
T TIGR03799       318 LKGIERADSVTIDAHKQLYVPM--GAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGR  395 (522)
T ss_pred             hcCchhCCEEEEChhhcCCcCc--ccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhH
Confidence            11  268999999999888775  35777654 55554443211110              111 1122355555543  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Q 013019          404 KTLHLRVQQQNSTALRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       404 ~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yP  436 (451)
                      +.+...+++..+.++.+++.|+++|+++.+.-|
T Consensus       396 ~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p  428 (522)
T TIGR03799       396 KGYELLIDQSIEKAKYFADLIQQQPDFELVTEP  428 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC
Confidence            456677888889999999999999988765543

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.48  E-value=2.8e-12  Score=134.17  Aligned_cols=223  Identities=16%  Similarity=0.184  Sum_probs=142.3

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHh-------h------
Q 013019          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV-------L------  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga-e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~-------l------  270 (451)
                      +.++...+|.++|+++... +..++++||++|+..++....  ...++||..++.|.+....+...       .      
T Consensus        85 ~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~  164 (423)
T TIGR00713        85 APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSP  164 (423)
T ss_pred             CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCC
Confidence            3567788999999998764 578888999999999887532  24589999999998843221110       0      


Q ss_pred             ---hcCCcEEEEeCCCCHHHHHHhhcC--CCeEEEEEe-CCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCc
Q 013019          271 ---PKMGITATVIDPADMEGLEAALNN--NNVSLFFTE-SPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN  340 (451)
Q Consensus       271 ---~~~Gi~v~~vd~~D~d~Le~ai~~--~~tklV~le-sPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~  340 (451)
                         ...+..+..++..|+++|++++++  .++++|++| .|+| +|.+.+    +++|.++|++||+++|+||++.....
T Consensus       165 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~  243 (423)
T TIGR00713       165 GVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRV  243 (423)
T ss_pred             CCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccccc
Confidence               000111233445689999998862  248999998 6777 787765    78999999999999999999743211


Q ss_pred             -----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh---HhhCCCccHHHHHHHHHhhHHHHH--HH
Q 013019          341 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTLHL--RV  410 (451)
Q Consensus       341 -----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~---~~~G~~ls~~~a~l~lrgL~tl~~--Rl  410 (451)
                           ........|++  +++|.+++ | ..+|++++++++++.+....   .......++..+..++..|+.+..  .+
T Consensus       244 g~~~~~~~~~~~pDi~--t~sK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~  319 (423)
T TIGR00713       244 ALGGAQEYFGVEPDLT--TLGKIIGG-G-LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVY  319 (423)
T ss_pred             CcchhHHHhCCCcchh--hhhhhhcC-C-CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHH
Confidence                 11112224654  69999984 4 56899999999988876321   111123566666665555554432  22


Q ss_pred             HHHHHHHH----HHHHHHHcCCCeEEEe
Q 013019          411 QQQNSTAL----RMAEILEAHPKVLLLF  434 (451)
Q Consensus       411 ~~~~~nA~----~Lae~L~~~p~V~~V~  434 (451)
                      ++..+..+    .|.+.+++++.+..|.
T Consensus       320 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~  347 (423)
T TIGR00713       320 TELDELAKRLAEGLSEVLEDTGIPHTVN  347 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            33333333    3444455666554443

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.47  E-value=4.1e-12  Score=134.39  Aligned_cols=218  Identities=21%  Similarity=0.184  Sum_probs=149.1

Q ss_pred             HHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccC--------CC------eEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          214 VVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPA--------GG------HIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       214 ~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~~--------GD------~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      .+-..++++++.   ....++++|++|+..++++....        +.      +|+++...|.+..    +.+..+|+.
T Consensus       105 ~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~----Kaa~~lG~~  180 (460)
T COG0076         105 RVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFE----KAARYLGLG  180 (460)
T ss_pred             HHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHH----HHHHHhCCC
Confidence            344556667776   24678888889998877654211        11      6899888887755    444555665


Q ss_pred             EEEeC------CCCHHHHHHhhcCCCeEE--EEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc---ccccc
Q 013019          277 ATVID------PADMEGLEAALNNNNVSL--FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKALS  345 (451)
Q Consensus       277 v~~vd------~~D~d~Le~ai~~~~tkl--V~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~---~~pl~  345 (451)
                      ++.+.      ..|+++|+++|+++ +..  |+...++-++|.+.||++|+++|++++++++||.+|+..+.   .....
T Consensus       181 ~~~v~~~~~~~~id~~~l~~~i~~~-t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~  259 (460)
T COG0076         181 LRRVPTVPTDYRIDVDALEEAIDEN-TIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGR  259 (460)
T ss_pred             ceeEEeccCccccCHHHHHHHHHhh-ccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccch
Confidence            54442      24899999999986 554  77778899999999999999999999999999999876432   11111


Q ss_pred             ----C-CCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHH-HhHhhCC-----------Cc--cHHHHHHHHH--hh
Q 013019          346 ----L-GADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRN-LHHVLGG-----------AL--NPNAAYLIIR--GM  403 (451)
Q Consensus       346 ----~-GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~-~~~~~G~-----------~l--s~~~a~l~lr--gL  403 (451)
                          + ++|-++.++|||+..+-  .+|+++.+ ++...++.. ...+++.           ..  ....+|..++  |.
T Consensus       260 ~~f~l~~vdSIt~d~HK~g~aP~--~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~  337 (460)
T COG0076         260 WDFGLEGVDSITVDGHKYGLAPI--GCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGR  337 (460)
T ss_pred             hhcCCCCceEEEECcccccCCCC--CceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCH
Confidence                1 68999999999987664  36666554 433333332 2222221           11  2344666555  34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC
Q 013019          404 KTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       404 ~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                      +.+...+++..++++.+++.|++.+..+-+.-|.+
T Consensus       338 eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l  372 (460)
T COG0076         338 EGYRKLLDRTLELARYLAEELEKLGDFELVNEPEL  372 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCcc
Confidence            77778889999999999999999876655554544

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.47  E-value=2e-12  Score=146.95  Aligned_cols=212  Identities=16%  Similarity=0.182  Sum_probs=146.1

Q ss_pred             HHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHc----cCCC----eEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          213 VVVEEKMSALEGAESTVIMASGM-SASTVMLLALV----PAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       213 ~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all----~~GD----~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      .+++++|+++.|.+.+-+..+|+ ++..+.++++.    ++||    +|++++..|++....    +...|+++++++. 
T Consensus       545 ~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~s----a~~~G~~vv~v~~d  620 (954)
T PRK05367        545 DQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPAS----AVMAGMKVVVVACD  620 (954)
T ss_pred             HHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHH----HHHCCCEEEEECCC
Confidence            46789999999998777766554 56645444433    5666    599999999886643    4566889888764 


Q ss_pred             ----CCHHHHHHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC--CccccccCCCcEEEEC
Q 013019          283 ----ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP--LNQKALSLGADLVLHS  354 (451)
Q Consensus       283 ----~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~--~~~~pl~~GaDiVv~S  354 (451)
                          .|+++|+++++++  ++.+|++.+|++..+...|+++|+++||++|+++++|.++...  ....|.++|+|+++.|
T Consensus       621 ~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s  700 (954)
T PRK05367        621 ENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLN  700 (954)
T ss_pred             CCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEec
Confidence                3789999999653  4788888888865333468999999999999999999997532  2346678999999999


Q ss_pred             CcccCCccc---cceeEEEEeCHHHHHHHHHHh-------HhhCCCc-cHH---------HHHHHHHhhHHHHHHHHHHH
Q 013019          355 ATKFIGGHN---DVLAGSISGSGKLVTQIRNLH-------HVLGGAL-NPN---------AAYLIIRGMKTLHLRVQQQN  414 (451)
Q Consensus       355 ~SK~l~G~g---dv~gG~Iv~~~eli~~lr~~~-------~~~G~~l-s~~---------~a~l~lrgL~tl~~Rl~~~~  414 (451)
                      +||+|+++-   .-..|++..++.+...+....       ...|... +++         ..|+...|.+.+....++..
T Consensus       701 ~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~  780 (954)
T PRK05367        701 LHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAI  780 (954)
T ss_pred             CcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            999976332   112577777755443322110       0011111 111         12333456677777778888


Q ss_pred             HHHHHHHHHHHcCC
Q 013019          415 STALRMAEILEAHP  428 (451)
Q Consensus       415 ~nA~~Lae~L~~~p  428 (451)
                      .+|..+++.|+++.
T Consensus       781 ~~A~Yl~~~L~~~~  794 (954)
T PRK05367        781 LNANYIAKRLKDHY  794 (954)
T ss_pred             HHHHHHHHHHHhhc
Confidence            89999999998763

>PLN02624 ornithine-delta-aminotransferase

Probab=99.46  E-value=5.1e-12  Score=134.56  Aligned_cols=198  Identities=16%  Similarity=0.201  Sum_probs=133.7

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc---------CCC-eEEEcCCCCcch-HHHHHHhh----
Q 013019          206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP---------AGG-HIVTTTDCYRKT-RIFIETVL----  270 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~---------~GD-~VIv~~~~Y~~t-~~~l~~~l----  270 (451)
                      ++.++...+|+++|+++.+.+.+++++||++|+..++.....         ++. .|+.....|.+. ...+....    
T Consensus       113 ~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~  192 (474)
T PLN02624        113 AFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEA  192 (474)
T ss_pred             ccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccc
Confidence            467888899999999999888899999999999998864332         123 467766666653 22221000    


Q ss_pred             -hcC---CcEEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC-C
Q 013019          271 -PKM---GITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-L  339 (451)
Q Consensus       271 -~~~---Gi~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~-~  339 (451)
                       ..+   .-.+.+++..|++.+++.++.  .++++|++|.++|++|.+.+    +++|.++|++||+++|+||++... .
T Consensus       193 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~Gr  272 (474)
T PLN02624        193 TRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLAR  272 (474)
T ss_pred             cccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCc
Confidence             001   112345666789999998852  35899999999999999887    999999999999999999997521 1


Q ss_pred             cccc-----ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHH
Q 013019          340 NQKA-----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL  406 (451)
Q Consensus       340 ~~~p-----l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl  406 (451)
                      ....     .....|+++  ++|.+++.. ..+|++++++++++.+...........++..+..+...|+.+
T Consensus       273 tG~~~a~~~~~i~pDiv~--lsK~lggG~-~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l  341 (474)
T PLN02624        273 TGKMLACDWEEVRPDVVI--LGKALGGGV-IPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVV  341 (474)
T ss_pred             CcchhhHHhcCCCCCEEE--ecccccCCC-CcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHH
Confidence            1111     122356666  579998653 356788888888776653322111134566665555555544

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.45  E-value=1.2e-12  Score=125.79  Aligned_cols=221  Identities=11%  Similarity=0.129  Sum_probs=157.5

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCC-CeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~G-D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      |.+|-...+...+++--+- .+.++++-|+ +.|.++++..+-|| ++|+...|.|+-..    -.+...++++.-++. 
T Consensus        66 ~~d~rnk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~----v~A~iNd~eVvkvpl~  141 (375)
T KOG0633|consen   66 YPDPRNKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYV----VDAAINDAEVVKVPLN  141 (375)
T ss_pred             cCCcccchhhhhcccCCCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEE----EEeecCCceEEEecCC
Confidence            4445555555555554332 5678889999 89999999999999 88999999997532    123445677665542 


Q ss_pred             ----CCHHHHHHhhcCC-CeEEEEEeCCCCCccccccHHHHHHHHHh-cCCEEEEecCCCCCCc-cccc----cCCCcEE
Q 013019          283 ----ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLN-QKAL----SLGADLV  351 (451)
Q Consensus       283 ----~D~d~Le~ai~~~-~tklV~lesPsNPtG~v~DL~~IaelA~~-~g~~lVVD~tfa~~~~-~~pl----~~GaDiV  351 (451)
                          .|.|++.+.+..+ .+|++|+++|+||||.....+.|.++... -|.++|+||+|..+.. ...+    ++-.-++
T Consensus       142 pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLiv  221 (375)
T KOG0633|consen  142 PDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIV  221 (375)
T ss_pred             CCccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceee
Confidence                3688888877643 58999999999999999988888887764 3789999999755322 1111    1223488


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc-cHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL-NPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l-s~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      +.++||.+|..| ++.|+-..+.++++.+...+..+.... ....|..++.  .++.++.-.+.+.+...+|...|.+.|
T Consensus       222 lqTlSKsfGLAG-iRvG~~~~~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~  300 (375)
T KOG0633|consen  222 LQTLSKSFGLAG-IRVGYGAFPLSIAEILNRAKAPYNISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVP  300 (375)
T ss_pred             hhhhhhhcCcce-eEeecccccHHHHHHHHhccCCccccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            999999998776 778998888888888887776654332 2222222232  456666666777788889999999988


Q ss_pred             CeEE
Q 013019          429 KVLL  432 (451)
Q Consensus       429 ~V~~  432 (451)
                      .+..
T Consensus       301 ~~~~  304 (375)
T KOG0633|consen  301 FLND  304 (375)
T ss_pred             cccC
Confidence            8766

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.45  E-value=1.1e-11  Score=127.50  Aligned_cols=219  Identities=14%  Similarity=0.097  Sum_probs=133.9

Q ss_pred             hhHHHHHHHHHhhh-CC-C-cEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcc-hHHHHHHh-----hhcCCc---
Q 013019          210 PTTVVVEEKMSALE-GA-E-STVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRK-TRIFIETV-----LPKMGI---  275 (451)
Q Consensus       210 pt~~~Lee~LA~l~-ga-e-~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~-t~~~l~~~-----l~~~Gi---  275 (451)
                      +....+++++++.+ +. + .+++++||++|+..++....  ..+++|++.+..|.+ +...+...     ...++.   
T Consensus        66 ~~~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~  145 (375)
T PRK04260         66 LYLNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVP  145 (375)
T ss_pred             ccCCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCC
Confidence            34455666777644 32 2 25677899999998887653  346778888777665 33322110     011111   


Q ss_pred             EEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC-Cccccc---c--
Q 013019          276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LNQKAL---S--  345 (451)
Q Consensus       276 ~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~-~~~~pl---~--  345 (451)
                      .+.+.+..|++++++++.+ ++.+|++|.++|++|.+.+    +++|.++|+++|+++|+|+++... ....+.   .  
T Consensus       146 ~~~~~~~~dl~~l~~~l~~-~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~  224 (375)
T PRK04260        146 HFSYAIFNDLNSVKALVNK-NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYG  224 (375)
T ss_pred             CeEEeCCCCHHHHHHhcCC-CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhC
Confidence            1233345689999998876 4899999999999998765    899999999999999999997421 111111   1  


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHHHHH----
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALR----  419 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~nA~~----  419 (451)
                      ...|++  |++|.+++.  ...|++++++++.+.+...........++..+..+...|+.+.  ..+++..++.++    
T Consensus       225 ~~pdi~--t~sK~l~~G--~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~  300 (375)
T PRK04260        225 IEPDIF--TLAKGLANG--VPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQ  300 (375)
T ss_pred             CCCCEE--EecccccCC--cceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            224644  799999853  4689999999887776532221112235665555555554332  223333333333    


Q ss_pred             HHHHHHcCCCeEEE
Q 013019          420 MAEILEAHPKVLLL  433 (451)
Q Consensus       420 Lae~L~~~p~V~~V  433 (451)
                      +.+.+.+++.+..+
T Consensus       301 l~~~~~~~~~~~~~  314 (375)
T PRK04260        301 LQKALQDKETVTTV  314 (375)
T ss_pred             HHHHHhhCCCeeEE
Confidence            44445556555444

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.43  E-value=3.8e-12  Score=124.46  Aligned_cols=178  Identities=21%  Similarity=0.357  Sum_probs=137.9

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCeEEEcCCC-CcchHHHH------HHh
Q 013019          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTTDC-YRKTRIFI------ETV  269 (451)
Q Consensus       200 ~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv---~sSG~aAi~~al~all~~GD~VIv~~~~-Y~~t~~~l------~~~  269 (451)
                      .+|.|   .+-.++.|++..|+.+|+|.+++   +-||+.||.++|..+++|||+++..... |....+.+      ...
T Consensus        58 tGYGy---dD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gS  134 (416)
T COG4100          58 TGYGY---DDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGS  134 (416)
T ss_pred             CCCCc---cccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCccc
Confidence            34555   45567789999999999998876   5699999999999999999998765432 33222222      123


Q ss_pred             hhcCCcEEEEeCC-----CCHHHHHHhhcCCCeEEEEEeCCC----CCccccccHHHHHHHHHhc--CCEEEEecCCCCC
Q 013019          270 LPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTESPT----NPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATP  338 (451)
Q Consensus       270 l~~~Gi~v~~vd~-----~D~d~Le~ai~~~~tklV~lesPs----NPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~  338 (451)
                      ++.+|+..+-++.     .|.+.++.+++++ ||+|.+.-..    -|...+.+|+++.++.++-  ++++.|||+|+.+
T Consensus       135 L~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~~-tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEF  213 (416)
T COG4100         135 LKDFGIKYKAVPLTADGKIDIQAVKTAISDR-TKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEF  213 (416)
T ss_pred             HHHhCcceeecccccCCcccHHHHHHhcCcc-ceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhh
Confidence            5667787776664     3889999999985 9999986433    3556677889999988874  6999999999987


Q ss_pred             Cc-cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHH
Q 013019          339 LN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR  381 (451)
Q Consensus       339 ~~-~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr  381 (451)
                      +. ..|...|+|++..|+-|--||.---.||+++++++++++..
T Consensus       214 vE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~  257 (416)
T COG4100         214 VEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA  257 (416)
T ss_pred             hhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence            54 56788899999999999998875556899999999998754

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.43  E-value=7.4e-12  Score=128.07  Aligned_cols=228  Identities=17%  Similarity=0.163  Sum_probs=150.5

Q ss_pred             CCCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHccCC-----CeEEEcCCCCcc-hHHHH--------HHhh
Q 013019          206 RYGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVPAG-----GHIVTTTDCYRK-TRIFI--------ETVL  270 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g-ae~~vv~sSG~aAi~~al~all~~G-----D~VIv~~~~Y~~-t~~~l--------~~~l  270 (451)
                      -|.++...+|.++|+++.+ .+.+++++||++|+.+++....+.+     .+||.....|.+ |...+        .+.+
T Consensus        80 ~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F  159 (404)
T COG4992          80 LFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGF  159 (404)
T ss_pred             ccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCC
Confidence            3567899999999999996 8889999999999999987654433     268888877765 22111        1111


Q ss_pred             hcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCC----C--Cc
Q 013019          271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----P--LN  340 (451)
Q Consensus       271 ~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~----~--~~  340 (451)
                      ..+--.+++++..|+++++++|++ +|.+|++|...-..|.+..    ++++.++|++||+++|.||.+..    +  +.
T Consensus       160 ~Pl~~g~~~vpfnDi~al~~ai~~-~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA  238 (404)
T COG4992         160 GPLLPGFRHVPFNDIEALEAAIDE-DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFA  238 (404)
T ss_pred             CCCCCCceecCCCCHHHHHHHhcc-CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHH
Confidence            111124566788899999999998 4999999998887776653    88999999999999999999642    1  11


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHHHHH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTAL  418 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~  418 (451)
                      ..-...-.||++  +.|.++|.  ...|++++++++.+.+....+.....-+|+.+......|+.+..  -+++..+...
T Consensus       239 ~e~~gV~PDI~t--laK~LgGG--~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~  314 (404)
T COG4992         239 YEHYGVEPDILT--LAKALGGG--FPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGE  314 (404)
T ss_pred             HHHhCCCCCEEE--eeccccCC--ccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence            111122347776  79999976  45677777654444433222211122367777766666665432  2344444444


Q ss_pred             HHHHHHH----cCCCeEEEecCCC
Q 013019          419 RMAEILE----AHPKVLLLFITLL  438 (451)
Q Consensus       419 ~Lae~L~----~~p~V~~V~yPgL  438 (451)
                      .+.+.|+    +.|.|+.|+--||
T Consensus       315 ~~~~~L~~l~~~~~~v~~vRG~GL  338 (404)
T COG4992         315 YLLQRLRELKRRYPLVKEVRGRGL  338 (404)
T ss_pred             HHHHHHHHHhhcCCceeeeeccee
Confidence            4444444    3456777765554

>PLN02590 probable tyrosine decarboxylase

Probab=99.42  E-value=3.5e-11  Score=129.45  Aligned_cols=227  Identities=15%  Similarity=0.190  Sum_probs=151.1

Q ss_pred             ccCCCchhHHHHH----HHHHhhhCCC---------cEEEeCCHHHHHHHHHHHHccC-----C-----C-eEEEcCCCC
Q 013019          204 YGRYGNPTTVVVE----EKMSALEGAE---------STVIMASGMSASTVMLLALVPA-----G-----G-HIVTTTDCY  259 (451)
Q Consensus       204 Y~R~~npt~~~Le----e~LA~l~gae---------~~vv~sSG~aAi~~al~all~~-----G-----D-~VIv~~~~Y  259 (451)
                      ++....|...++|    ++|++++|.+         ..+++++|++|+..++.+....     |     + .|++++..|
T Consensus       160 ~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH  239 (539)
T PLN02590        160 FTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTH  239 (539)
T ss_pred             CCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCch
Confidence            4444556655555    5567777753         2678888999888877654221     1     1 344566666


Q ss_pred             cchHHHHHHhhhcCCc---EEEEe--C-----CCCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHh
Q 013019          260 RKTRIFIETVLPKMGI---TATVI--D-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHK  324 (451)
Q Consensus       260 ~~t~~~l~~~l~~~Gi---~v~~v--d-----~~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~  324 (451)
                      .+..    +.+..+|+   .++.+  |     ..|+++|+++|++.     .+-+|+....+-.+|.+.||++|+++|++
T Consensus       240 ~Sv~----KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~  315 (539)
T PLN02590        240 SSFR----KACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKK  315 (539)
T ss_pred             HHHH----HHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHH
Confidence            6544    44444554   23333  3     24899999999642     24567777777889999999999999999


Q ss_pred             cCCEEEEecCCCCCCccc----cccC---CCcEEEECCcccCCccccceeEEEEeCH--HHHHHHHHHhHh---------
Q 013019          325 KGAIVCIDGTFATPLNQK----ALSL---GADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIRNLHHV---------  386 (451)
Q Consensus       325 ~g~~lVVD~tfa~~~~~~----pl~~---GaDiVv~S~SK~l~G~gdv~gG~Iv~~~--eli~~lr~~~~~---------  386 (451)
                      ||+|++||.+|+......    .+..   .+|-+..++|||+..+-  .+|++..++  .+.+.+.....+         
T Consensus       316 ~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~--~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~  393 (539)
T PLN02590        316 YGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQ--TCSPLWVKDRYSLIDALKTNPEYLEFKVSKKD  393 (539)
T ss_pred             hCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCc--CEEEEEecCHHHHHHHhhcCHHHhCCcccccc
Confidence            999999999998653221    1122   37999999999998775  367666654  233322211111         


Q ss_pred             -----------hCCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Q 013019          387 -----------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       387 -----------~G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yP  436 (451)
                                 ++-....+..|+.++  |.+.+..+++++.+.|+.+++.|+++|.++-+.-|
T Consensus       394 ~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~  456 (539)
T PLN02590        394 TVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTR  456 (539)
T ss_pred             cCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence                       112234455677665  56788899999999999999999999987765433

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.42  E-value=2.1e-12  Score=125.88  Aligned_cols=175  Identities=20%  Similarity=0.262  Sum_probs=134.1

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHH-HH
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME-GL  288 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d-~L  288 (451)
                      .....||.+||++.+.|++++++++-.|+..++-+++.|.|-|+.+...|.+...-+ .++++++    .+|..|++ .+
T Consensus       112 ~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGi-rLckry~----h~dv~~l~~~l  186 (417)
T KOG1359|consen  112 DIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGI-RLCKRYR----HVDVFDLEHCL  186 (417)
T ss_pred             HHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhh-HHHhhhc----cchhHHHHHHH
Confidence            456789999999999999999999999999999999999999988887777655444 2334332    23333333 23


Q ss_pred             HHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc-----ccC----CCcEEEECCcccC
Q 013019          289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-----LSL----GADLVLHSATKFI  359 (451)
Q Consensus       289 e~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p-----l~~----GaDiVv~S~SK~l  359 (451)
                      .++.+- +.++|.....-+..|.+.++++|.++++++|+++++|+++++++...-     ..+    .+|++..+++|.+
T Consensus       187 ~~a~k~-r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAl  265 (417)
T KOG1359|consen  187 ISACKM-RLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKAL  265 (417)
T ss_pred             HHhhhh-eEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhh
Confidence            333333 478999999999999999999999999999999999999988754321     112    2689999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHhH--hhCCCccH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNP  393 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~  393 (451)
                      ||..   |||..++..++.-++...+  .+...+.|
T Consensus       266 Gga~---GGyttgp~~li~llrqr~RpylFSnslpp  298 (417)
T KOG1359|consen  266 GGAS---GGYTTGPKPLISLLRQRSRPYLFSNSLPP  298 (417)
T ss_pred             cCCC---CCCccCChhHHHHHHhcCCceeecCCCCh
Confidence            9875   9999999999998886443  23344443

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.41  E-value=8.8e-12  Score=128.88  Aligned_cols=158  Identities=16%  Similarity=0.095  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHhhhCCC---cEEEeC-CHHHHHHHHHHHHccC-CCeEEEcCCCCcchHHHHHHhhhcCCc-EEEEeCC--
Q 013019          211 TTVVVEEKMSALEGAE---STVIMA-SGMSASTVMLLALVPA-GGHIVTTTDCYRKTRIFIETVLPKMGI-TATVIDP--  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae---~~vv~s-SG~aAi~~al~all~~-GD~VIv~~~~Y~~t~~~l~~~l~~~Gi-~v~~vd~--  282 (451)
                      ..++.++.|++++|..   +.++++ ||+.++..++.+++++ ++.|++ ...|+..  +.....++.|+ +++.+..  
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~--~~~~~~~~~g~~~v~~~~~~~  125 (378)
T PRK03080         49 LLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSK--WATDVVKQLKLEDPRVLEADY  125 (378)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHH--HHHHHHhhcCCCCceEeccCC
Confidence            3556789999999962   456565 8999999999999875 445554 5566653  22223356677 7776653  


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccC
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l  359 (451)
                         .|+++    ++.  +++|.+....|.||...|+++|++  |++|+++++|.+.+.+...-.++ .+|+++.|.+|+|
T Consensus       126 g~~~d~~~----i~~--~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~-~iD~~~~s~~K~l  196 (378)
T PRK03080        126 GSLPDLSA----VDF--DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWS-KLDVYTFSWQKVL  196 (378)
T ss_pred             CCCCCHhh----cCC--CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHH-HCcEEEEehhhhC
Confidence               24444    332  466888888899999999999999  88999999999976542211112 2799999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRN  382 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~  382 (451)
                      +|+.  ..|+++.++++++++..
T Consensus       197 ~~P~--G~g~l~v~~~~~~~~~p  217 (378)
T PRK03080        197 GGEG--GHGMAILSPRAVERLES  217 (378)
T ss_pred             CCCC--ceEEEEECHHHHHhhhc
Confidence            8843  38999999988877653

>PLN02880 tyrosine decarboxylase

Probab=99.41  E-value=2.3e-11  Score=130.02  Aligned_cols=215  Identities=13%  Similarity=0.143  Sum_probs=143.9

Q ss_pred             HHHHHHHhhhCCC---------cEEEeCCHHHHHHHHHHHHcc-----C-----CC-eEEEcCCCCcchHHHHHHhhhcC
Q 013019          214 VVEEKMSALEGAE---------STVIMASGMSASTVMLLALVP-----A-----GG-HIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       214 ~Lee~LA~l~gae---------~~vv~sSG~aAi~~al~all~-----~-----GD-~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      .+-+++++++|.+         ..+++++|++|+..++.+...     .     .. .|++++..|.+..    +.+..+
T Consensus       126 ~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~----Kaa~~l  201 (490)
T PLN02880        126 IVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQ----KACQIA  201 (490)
T ss_pred             HHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHH----HHHHHc
Confidence            3456677777753         267788888988877765432     1     12 3556777776654    344445


Q ss_pred             CcE---EEE--eC-----CCCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC
Q 013019          274 GIT---ATV--ID-----PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP  338 (451)
Q Consensus       274 Gi~---v~~--vd-----~~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~  338 (451)
                      |+.   ++.  +|     ..|+++|+++|++.     .+-+|+....+-.+|.+.|+++|+++|+++|+|++||.+|+.+
T Consensus       202 Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~  281 (490)
T PLN02880        202 GIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGS  281 (490)
T ss_pred             CCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHH
Confidence            552   233  33     24889999988642     2466777777888999999999999999999999999998865


Q ss_pred             Cccc-----ccc--CCCcEEEECCcccCCccccceeEEEEeCH-H-HHHHHHHHhHh--------------------hCC
Q 013019          339 LNQK-----ALS--LGADLVLHSATKFIGGHNDVLAGSISGSG-K-LVTQIRNLHHV--------------------LGG  389 (451)
Q Consensus       339 ~~~~-----pl~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-e-li~~lr~~~~~--------------------~G~  389 (451)
                      ....     .++  .++|.++.++|||+..+-  .+|++..++ + +.+.+..-..+                    .|.
T Consensus       282 ~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~--~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~r  359 (490)
T PLN02880        282 ACICPEYRHYIDGVEEADSFNMNAHKWFLTNF--DCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGR  359 (490)
T ss_pred             HHhCHHHHHHhcCchhcCEEEECchhhcCCCc--cEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCC
Confidence            3221     111  258999999999998875  467777653 2 22222111111                    111


Q ss_pred             CccHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Q 013019          390 ALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLF  434 (451)
Q Consensus       390 ~ls~~~a~l~l--rgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~  434 (451)
                      .......|+.+  .|.+.+..++++..+.++++++.|+++|+++.+.
T Consensus       360 r~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~  406 (490)
T PLN02880        360 RFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVT  406 (490)
T ss_pred             cccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence            22345566554  4678888999999999999999999998766544

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.40  E-value=3e-11  Score=118.75  Aligned_cols=211  Identities=19%  Similarity=0.207  Sum_probs=152.3

Q ss_pred             HHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----CC
Q 013019          213 VVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----AD  284 (451)
Q Consensus       213 ~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----~D  284 (451)
                      +++.+-+...+..   ..-++-++|+.+..+++..++.|||.|++....-.+.+  .....+++|++|+.++.     ..
T Consensus        53 ~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~r--a~D~~~r~ga~V~~v~~~~G~~~~  130 (385)
T KOG2862|consen   53 DEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQR--AADCARRYGAEVDVVEADIGQAVP  130 (385)
T ss_pred             HHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHH--HHHHHHhhCceeeEEecCcccCcc
Confidence            3445555555553   22345578889999999999999999888654333322  23567899999998853     26


Q ss_pred             HHHHHHhhcCCCeEEEEEeCCCCCcccccc-HHHHHHHHHhcCCEEEEecCCCC-CCccccccCCCcEEEECCcccCCcc
Q 013019          285 MEGLEAALNNNNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFIGGH  362 (451)
Q Consensus       285 ~d~Le~ai~~~~tklV~lesPsNPtG~v~D-L~~IaelA~~~g~~lVVD~tfa~-~~~~~pl~~GaDiVv~S~SK~l~G~  362 (451)
                      +++|++++.++++++|+++.--.-||...| ++.+.++||+|+++++||..-.- ......-++|+|+......|.++++
T Consensus       131 le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP  210 (385)
T KOG2862|consen  131 LEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAP  210 (385)
T ss_pred             HHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCC
Confidence            899999998888999999988888999999 77888999999999999997432 2233444889999999999999988


Q ss_pred             ccceeEEEEeCHHHHHHHHHHhH--------------hhCCC---------cc-----HHHHHHHHHhhHHHHHHHHHHH
Q 013019          363 NDVLAGSISGSGKLVTQIRNLHH--------------VLGGA---------LN-----PNAAYLIIRGMKTLHLRVQQQN  414 (451)
Q Consensus       363 gdv~gG~Iv~~~eli~~lr~~~~--------------~~G~~---------ls-----~~~a~l~lrgL~tl~~Rl~~~~  414 (451)
                      .  ..+.|..++...++++..+.              ++|..         .+     .+.+.+.+-.-+.++.++++|.
T Consensus       211 ~--GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~  288 (385)
T KOG2862|consen  211 A--GLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHR  288 (385)
T ss_pred             C--CcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6  35667777777777764332              23322         11     1222333333355777889999


Q ss_pred             HHHHHHHHHHHcC
Q 013019          415 STALRMAEILEAH  427 (451)
Q Consensus       415 ~nA~~Lae~L~~~  427 (451)
                      ++++.+...|+++
T Consensus       289 e~s~~l~~~l~~~  301 (385)
T KOG2862|consen  289 EMSKWLKLSLEAL  301 (385)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998888875

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.39  E-value=3.4e-11  Score=125.89  Aligned_cols=228  Identities=17%  Similarity=0.136  Sum_probs=143.8

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHcc----CC-----CeEEEcCCCCcch-HHHHHHh----h-
Q 013019          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALVP----AG-----GHIVTTTDCYRKT-RIFIETV----L-  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga-e~~vv~sSG~aAi~~al~all~----~G-----D~VIv~~~~Y~~t-~~~l~~~----l-  270 (451)
                      +.++...+|.++|.++.+. +...+++||++|+..++.....    .|     .+|+.....|.+. ...+...    . 
T Consensus        79 ~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~  158 (408)
T PRK04612         79 FYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQ  158 (408)
T ss_pred             cCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccc
Confidence            4567777888999887643 5677888999999998865432    22     3688888877663 2222110    0 


Q ss_pred             hcC---CcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc-----HHHHHHHHHhcCCEEEEecCCCCC-Ccc
Q 013019          271 PKM---GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-----VKLVSDLCHKKGAIVCIDGTFATP-LNQ  341 (451)
Q Consensus       271 ~~~---Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D-----L~~IaelA~~~g~~lVVD~tfa~~-~~~  341 (451)
                      ..+   .-.+.+++..|++.++++++++++.+|++| |.+++|.+..     +++|.++|+++|+++|+||++... ...
T Consensus       159 ~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~e-P~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G  237 (408)
T PRK04612        159 EGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLE-PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG  237 (408)
T ss_pred             cCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEEC-CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC
Confidence            001   112455677789999999975557777775 6667765543     889999999999999999997531 111


Q ss_pred             cc---ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHHH
Q 013019          342 KA---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNST  416 (451)
Q Consensus       342 ~p---l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~n  416 (451)
                      ..   ...+....+.+++|.+++ | ...|++++++++++.+...........+|..+..++..|+.+..  .+++..+.
T Consensus       238 ~~~a~~~~~~~pdi~t~~K~l~~-G-~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~  315 (408)
T PRK04612        238 TLFAHWQEQVTPDIVTLAKALGG-G-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQ  315 (408)
T ss_pred             chhhhhhcCCCCCEEEEcchhcC-C-CceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            11   123455566779999985 3 46778888888877765432222223467777766666665532  23444444


Q ss_pred             HHHHHHHHHc----CCCeEEEecCC
Q 013019          417 ALRMAEILEA----HPKVLLLFITL  437 (451)
Q Consensus       417 A~~Lae~L~~----~p~V~~V~yPg  437 (451)
                      ...+.+.|++    ++.|..|+..|
T Consensus       316 g~~l~~~l~~l~~~~~~i~~vrg~G  340 (408)
T PRK04612        316 SAALRAGLEALNAEFGVFAQVRGRG  340 (408)
T ss_pred             HHHHHHHHHHHHhhCCCeeeeeccc
Confidence            5555554433    56666665544

>PLN00144 acetylornithine transaminase

Probab=99.39  E-value=4.3e-11  Score=124.05  Aligned_cols=225  Identities=13%  Similarity=0.125  Sum_probs=143.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccC---------------CCeEEEcCCCCcchH-HHHHHhh
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA---------------GGHIVTTTDCYRKTR-IFIETVL  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~---------------GD~VIv~~~~Y~~t~-~~l~~~l  270 (451)
                      +.++...+|.++|+++.+.+.+.+++||++|+..++.....-               ..+|+.....|.+.. ..+...-
T Consensus        54 ~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~  133 (382)
T PLN00144         54 YHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTS  133 (382)
T ss_pred             ccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCC
Confidence            457778889999998876678888899999999888754210               246888887776632 2221000


Q ss_pred             ----h-cCC---cEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc--c--HHHHHHHHHhcCCEEEEecCCCCC
Q 013019          271 ----P-KMG---ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV--D--VKLVSDLCHKKGAIVCIDGTFATP  338 (451)
Q Consensus       271 ----~-~~G---i~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~--D--L~~IaelA~~~g~~lVVD~tfa~~  338 (451)
                          + .++   -.+.+++..|++++++.+.++++++|++|...||.|...  .  +++|.++|++||+++|+||++...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~  213 (382)
T PLN00144        134 KEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGL  213 (382)
T ss_pred             CccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence                0 010   124556667899999988655689999998888844432  3  889999999999999999996432


Q ss_pred             -Ccccc-----ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHH-----H
Q 013019          339 -LNQKA-----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL-----H  407 (451)
Q Consensus       339 -~~~~p-----l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl-----~  407 (451)
                       ....+     ...-.|  +.+++|.+++.  ..+|++++++++++.+...........+|..+..++..|+.+     .
T Consensus       214 gr~g~~~~~~~~~~~PD--i~t~sK~l~~G--~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~  289 (382)
T PLN00144        214 GRTGYLWAHEAYGVEPD--IMTLAKPLAGG--LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFL  289 (382)
T ss_pred             CccchHhhhhhcCCCCC--EEEecccccCC--cceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHH
Confidence             11111     122346  66689999864  578999999988887754322222334666665555444333     2


Q ss_pred             HHHHHHHHH-HHHHHHHHHcCCCeEEEec
Q 013019          408 LRVQQQNST-ALRMAEILEAHPKVLLLFI  435 (451)
Q Consensus       408 ~Rl~~~~~n-A~~Lae~L~~~p~V~~V~y  435 (451)
                      .++++..+. .+.+.+.+.++|.+..|..
T Consensus       290 ~~~~~~g~~l~~~l~~~~~~~~~~~~vrg  318 (382)
T PLN00144        290 ASVAKKGEYLRELLRRKLGGNPHVKEVRG  318 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceeeec
Confidence            233332222 2234445666776666554

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.39  E-value=3.8e-11  Score=131.88  Aligned_cols=170  Identities=14%  Similarity=0.154  Sum_probs=125.4

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC------
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~------  282 (451)
                      -...+.|+..|+++|++.+.++.+|+ .++.+++++++++||.|++++++|-+.+.    .+-..|+...++.+      
T Consensus       195 G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~----aLilsga~PVYl~P~~n~~G  270 (713)
T PRK15399        195 GPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAH----LLMMSDVVPIWLKPTRNALG  270 (713)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHH----HHHHcCCeeEEecccccccC
Confidence            34567899999999999999999998 78999999999999999999999988664    33445666666542      


Q ss_pred             ----CC-----HHHHHHhhcCC----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEE-EEecCCCCCCc-------c
Q 013019          283 ----AD-----MEGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTFATPLN-------Q  341 (451)
Q Consensus       283 ----~D-----~d~Le~ai~~~----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~l-VVD~tfa~~~~-------~  341 (451)
                          .+     .+.|+++|+++    +++.+++.+|+ ..|.+.|++.|+++|   |+.+ ++|++|+....       .
T Consensus       271 i~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT-YdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~  346 (713)
T PRK15399        271 ILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST-YDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGK  346 (713)
T ss_pred             CcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC-CCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCc
Confidence                12     38888888643    23688888885 789999999999999   6766 69999765321       2


Q ss_pred             ccccC--CCcEE---EECCcccCCccccceeEEEEeCHHHH-HHHHHHhHhhCC
Q 013019          342 KALSL--GADLV---LHSATKFIGGHNDVLAGSISGSGKLV-TQIRNLHHVLGG  389 (451)
Q Consensus       342 ~pl~~--GaDiV---v~S~SK~l~G~gdv~gG~Iv~~~eli-~~lr~~~~~~G~  389 (451)
                      .++..  |+|.+   ++|+||.+++.+  .+.+|-.+..+- ++++.....+.+
T Consensus       347 sam~~~~~aD~~i~~tQStHKtL~alT--QaS~iHvk~~vd~~~~n~a~~m~~S  398 (713)
T PRK15399        347 SGMSGERVPGKVIFETQSTHKMLAAFS--QASLIHIKGEYDEETFNEAFMMHTS  398 (713)
T ss_pred             ChhhCCCCCCeeeeeeeehhccccccc--hheeeeecCCCCHHHHHHHHHHHcC
Confidence            23333  57877   999999999876  566665543322 445554444443

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.39  E-value=1.7e-11  Score=134.71  Aligned_cols=208  Identities=13%  Similarity=0.185  Sum_probs=141.7

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC------
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~------  282 (451)
                      -...+.|+..|+++|++.+.++.+|+ .++.+++++++++||.|++++++|-+.+.    .+...|+...++.+      
T Consensus       195 G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~h----aLilsga~PVYl~P~rn~~G  270 (714)
T PRK15400        195 GPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTH----LMMMSDVTPIYFRPTRNAYG  270 (714)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHH----HHHHcCCeEEEecccccccC
Confidence            34577899999999999999999998 88999999999999999999999988664    33445666666542      


Q ss_pred             ----CC-----HHHHHHhhcCC-CeE---EEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC------c-cc
Q 013019          283 ----AD-----MEGLEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------N-QK  342 (451)
Q Consensus       283 ----~D-----~d~Le~ai~~~-~tk---lV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~------~-~~  342 (451)
                          .+     .+.|+++|+++ +.+   .+++.+|+ ..|.+.|++.|+++|+.++  +++|++|+...      . ..
T Consensus       271 i~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT-YdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~s  347 (714)
T PRK15400        271 ILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKC  347 (714)
T ss_pred             CccCCCccccCHHHHHHHHHhCccccCccEEEEECCC-CccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcC
Confidence                13     78899888653 123   68887885 7899999999999999887  78999976532      1 33


Q ss_pred             cccCCC---c--EEEECCcccCCccccceeEEEEeCHHH-HHHHHHHhHhhCCCccHHHHHHHHHhhHH---------HH
Q 013019          343 ALSLGA---D--LVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRGMKT---------LH  407 (451)
Q Consensus       343 pl~~Ga---D--iVv~S~SK~l~G~gdv~gG~Iv~~~el-i~~lr~~~~~~G~~ls~~~a~l~lrgL~t---------l~  407 (451)
                      ++..|+   |  ++++|+||.+++.+  .+.+|-.+..+ .++++.....+.++ ||.  |+++.+|+.         -.
T Consensus       348 am~~ga~~~~~i~vtQStHKtL~alT--QaS~LHvkg~vd~~~~n~a~~m~~ST-SPs--Y~l~ASLD~a~~~m~~~~G~  422 (714)
T PRK15400        348 GMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTT-SPH--YGIVASTETAAAMMKGNAGK  422 (714)
T ss_pred             hhhcCCCCCCceEEEEchhhcccchh--HHhHHHHcCCCCHHHHHHHHHHHcCC-CcH--HHHHHHHHHHHHHHHhhhhH
Confidence            455677   5  99999999999775  34443322211 13455544444433 221  111111111         11


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCC
Q 013019          408 LRVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      ..+++..+.+..+.+.|.+.+.
T Consensus       423 ~l~~~~i~~a~~~R~~l~~~~~  444 (714)
T PRK15400        423 RLINGSIERAIKFRKEIKRLRT  444 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC
Confidence            2244555667777777766554

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.36  E-value=2.6e-11  Score=123.96  Aligned_cols=185  Identities=23%  Similarity=0.330  Sum_probs=131.2

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcC-CCC-cchHHHHHHhhhcCCcEEEEeCC---CCHHHH
Q 013019          214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT-DCY-RKTRIFIETVLPKMGITATVIDP---ADMEGL  288 (451)
Q Consensus       214 ~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~-~~Y-~~t~~~l~~~l~~~Gi~v~~vd~---~D~d~L  288 (451)
                      .+.+.+..+.|++.++++++-++|+..++.++.. +.+|+++. +.- ++.. -+...++.-|.++..+..   ....++
T Consensus        72 ~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~~-~~EvVis~g~lV~gg~~-~v~d~~~~aG~~l~EvG~tn~t~~~d~  149 (395)
T COG1921          72 ELAELLCGLTGAEAAAIVNNNAAAVLLTLNALAE-GKEVVVSRGELVEGGAF-RVPDIIRLAGAKLVEVGTTNRTHLKDY  149 (395)
T ss_pred             HHHHHHhcccchhheeeECCcHHHHHHHHhhhcc-CCeEEEEccccccCCCC-ChhHHHHHcCCEEEEecccCcCCHHHH
Confidence            5667777777889999999999999999888876 55666643 111 1111 133456667887776653   368899


Q ss_pred             HHhhcCCCeEEEE-EeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-----CccccccCCCcEEEECCcccCCcc
Q 013019          289 EAALNNNNVSLFF-TESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQKALSLGADLVLHSATKFIGGH  362 (451)
Q Consensus       289 e~ai~~~~tklV~-lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-----~~~~pl~~GaDiVv~S~SK~l~G~  362 (451)
                      +.+|.++ +++++ +-+.+-+.-...++++++++||++|+++++|.+-+..     -.+..+..|+|+|++|..|.|+|+
T Consensus       150 ~~AIne~-ta~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGP  228 (395)
T COG1921         150 ELAINEN-TALLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGP  228 (395)
T ss_pred             HHHhccC-CeeEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCC
Confidence            9999986 66654 3333322333457888999999999999999986543     334556789999999999999999


Q ss_pred             ccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH
Q 013019          363 NDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (451)
Q Consensus       363 gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~  404 (451)
                      .   +|+|+|+++++++++......+...+...-..+.+.|+
T Consensus       229 q---aGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe  267 (395)
T COG1921         229 Q---AGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALE  267 (395)
T ss_pred             c---cceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHH
Confidence            6   99999999999998876554454444444333333333

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.35  E-value=3.2e-11  Score=137.25  Aligned_cols=158  Identities=22%  Similarity=0.306  Sum_probs=127.0

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH-ccC--CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          213 VVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       213 ~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~al-l~~--GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      ..+++.+++|.|.+  ++-++.+++++..++++++ .++  ||+|++++.+|+.+...+...++..|++++.++..+  +
T Consensus       124 ~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d  201 (954)
T PRK05367        124 LNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--A  201 (954)
T ss_pred             HHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--C
Confidence            35688999999974  4577788888777777776 344  489999999999998888777888999999887643  1


Q ss_pred             HHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCC-CCCCccccccCCCcEEEECCccc-----CCc
Q 013019          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKF-----IGG  361 (451)
Q Consensus       288 Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tf-a~~~~~~pl~~GaDiVv~S~SK~-----l~G  361 (451)
                      +    ++.++.++++..|+ .+|.+.|+++|+++||++|+++++|... +......|.++|+||++.|.+||     +||
T Consensus       202 ~----~~~~~~~vlvq~p~-~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GG  276 (954)
T PRK05367        202 L----DHDDVFGVLLQYPG-TSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGG  276 (954)
T ss_pred             C----CcccEEEEEEecCC-CCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCC
Confidence            1    12247778887774 6999999999999999999999999865 33455678899999999999999     778


Q ss_pred             cccceeEEEEeCHHHHHHH
Q 013019          362 HNDVLAGSISGSGKLVTQI  380 (451)
Q Consensus       362 ~gdv~gG~Iv~~~eli~~l  380 (451)
                      ++   +|+++.++++.+++
T Consensus       277 P~---aGflavr~~~~r~l  292 (954)
T PRK05367        277 PH---AAYFAVRDAYKRSM  292 (954)
T ss_pred             CC---EEEEEECHHHHhhC
Confidence            86   89999998876654

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.35  E-value=3.6e-11  Score=134.74  Aligned_cols=147  Identities=16%  Similarity=0.209  Sum_probs=115.3

Q ss_pred             HHHHHHHHHhhhCCCcEEEeC-CHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALEGAESTVIMA-SGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~gae~~vv~s-SG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ..+|++.|+++.|.+.+-+.. +|+.+.+++++++..       + .++|+++...|+.....    +...|+++..++.
T Consensus       545 i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas----a~~~GieVv~Vp~  620 (954)
T PRK12566        545 IDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS----AQMAGMRVVIVEC  620 (954)
T ss_pred             HHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH----HHHCCCEEEEecc
Confidence            457899999999998877776 788777777776542       2 35788999899776532    4456889888764


Q ss_pred             -----CCHHHHHHhhcC--CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCC--CCccccccCCCcEEEE
Q 013019          283 -----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLH  353 (451)
Q Consensus       283 -----~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~--~~~~~pl~~GaDiVv~  353 (451)
                           .|+++|++.+++  .++.+|.+.+|++-.+...++++|+++||++|+++++|.+...  .....|.++|+|+++.
T Consensus       621 D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~  700 (954)
T PRK12566        621 DPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHM  700 (954)
T ss_pred             CCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEe
Confidence                 389999999872  2488899988987666666799999999999999999999643  2334567899999999


Q ss_pred             CCcccCCcc
Q 013019          354 SATKFIGGH  362 (451)
Q Consensus       354 S~SK~l~G~  362 (451)
                      +++|+|+++
T Consensus       701 s~HKtf~~P  709 (954)
T PRK12566        701 NLHKTFCIP  709 (954)
T ss_pred             cCCcccCcC
Confidence            999999854

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.35  E-value=2.6e-11  Score=124.79  Aligned_cols=213  Identities=12%  Similarity=0.063  Sum_probs=136.3

Q ss_pred             hhHHHHHHHHHhhhCC--C-cEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCH
Q 013019          210 PTTVVVEEKMSALEGA--E-STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM  285 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e-~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~  285 (451)
                      ...++.++.++++++.  + +.+++ +||+.++..++.+++.+ +.+++....|+.............+ ++.+++....
T Consensus        41 ~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~  118 (361)
T TIGR01366        41 NLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPG  118 (361)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccC-CceEEecCCC
Confidence            4456779999999997  3 24444 55889999999988743 4445555667654443333332333 4455543222


Q ss_pred             HHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccc
Q 013019          286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDV  365 (451)
Q Consensus       286 d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv  365 (451)
                      +.++..+.+ ++++|.+..-.|.||.+.|+++|   +|++|+++++|.+...+...-..+ .+|+++.|.+|++++++  
T Consensus       119 ~~~~~~~~~-~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~-~~D~~~~s~~K~lg~~~--  191 (361)
T TIGR01366       119 SAPEPQADP-GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIA-ETDVYYFAPQKNFASDG--  191 (361)
T ss_pred             CCCCCccCC-CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHH-HCCEEEEEchhhcCCCC--
Confidence            334444555 49999999999999999999887   588999999999966543221122 27999999999999986  


Q ss_pred             eeEEEEeCHHHHHHHHHHhH-------hh-----------C---CCccHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 013019          366 LAGSISGSGKLVTQIRNLHH-------VL-----------G---GALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (451)
Q Consensus       366 ~gG~Iv~~~eli~~lr~~~~-------~~-----------G---~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA~  418 (451)
                      ..++++.+++++++++....       .+           +   .+++....+.+..+++.      +..+.+++.+.++
T Consensus       192 Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~  271 (361)
T TIGR01366       192 GLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSS  271 (361)
T ss_pred             ceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            35566778888777652210       00           1   11122222222333333      3344577778888


Q ss_pred             HHHHHHHcCCCeE
Q 013019          419 RMAEILEAHPKVL  431 (451)
Q Consensus       419 ~Lae~L~~~p~V~  431 (451)
                      .+.++|++.+.++
T Consensus       272 ~l~~~l~~~~~~~  284 (361)
T TIGR01366       272 RLYSWAQERPYAT  284 (361)
T ss_pred             HHHHHHHhCCCcc
Confidence            8998998887653

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.34  E-value=3.2e-11  Score=124.70  Aligned_cols=221  Identities=18%  Similarity=0.214  Sum_probs=146.5

Q ss_pred             CchhHHHHHH----HHHhhhCCC---------cEEEeCCHHHHHHHHHHHHcc--------CC-----C-eEEEcCCCCc
Q 013019          208 GNPTTVVVEE----KMSALEGAE---------STVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCYR  260 (451)
Q Consensus       208 ~npt~~~Lee----~LA~l~gae---------~~vv~sSG~aAi~~al~all~--------~G-----D-~VIv~~~~Y~  260 (451)
                      ..|....+|+    ++++++|.+         ..+++++|++++..++.+...        .|     . .|++++..|.
T Consensus        73 ~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~  152 (373)
T PF00282_consen   73 ASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHY  152 (373)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-T
T ss_pred             cccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccccc
Confidence            4577666665    456677754         478888999998888765421        12     2 4777777777


Q ss_pred             chHHHHHHhhhcCCcEEEEeCC-----CCHHHHHHhhcCC----C-eEEEEEeCCCCCccccccHHHHHHHHHhcCCEEE
Q 013019          261 KTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN----N-VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC  330 (451)
Q Consensus       261 ~t~~~l~~~l~~~Gi~v~~vd~-----~D~d~Le~ai~~~----~-tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lV  330 (451)
                      +..    +.+..+|+.++.++.     .|+++|+++|++.    . +-+|+....+..+|.+.|+++|.++|+++|+|++
T Consensus       153 S~~----Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlH  228 (373)
T PF00282_consen  153 SIE----KAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLH  228 (373)
T ss_dssp             HHH----HHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEE
T ss_pred             HHH----HhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeee
Confidence            654    555667777777653     3788888887531    1 3366677788889999999999999999999999


Q ss_pred             EecCCCCCCc----cccccC---CCcEEEECCcccCCccccceeEEEEeCH-HHHHHHH-HHhHhhC-------------
Q 013019          331 IDGTFATPLN----QKALSL---GADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIR-NLHHVLG-------------  388 (451)
Q Consensus       331 VD~tfa~~~~----~~pl~~---GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr-~~~~~~G-------------  388 (451)
                      ||.+|+....    .+.+..   ++|-+..++||+++.+-  .+|++..++ ..+.... ....+++             
T Consensus       229 VDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~--~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~  306 (373)
T PF00282_consen  229 VDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPY--GCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYG  306 (373)
T ss_dssp             EEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SS--S-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEE
T ss_pred             ecccccccccccccccccccccccccccccchhhhhcCCc--cceeEEeecccchHHHhccChhhhcccccccccccccc
Confidence            9999886322    122222   47999999999999875  467776654 3332211 0000111             


Q ss_pred             ---CC----ccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Q 013019          389 ---GA----LNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLLF  434 (451)
Q Consensus       389 ---~~----ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~  434 (451)
                         ..    ...+..|+.++  |.+.+..++++..+.++.+++.|+++|.++.+.
T Consensus       307 ~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~  361 (373)
T PF00282_consen  307 DYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVN  361 (373)
T ss_dssp             EGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred             cccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence               11    23455676654  678899999999999999999999999977654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.34  E-value=8.7e-11  Score=122.24  Aligned_cols=238  Identities=19%  Similarity=0.145  Sum_probs=152.8

Q ss_pred             cccCCCc-cCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-CCCeEEEc
Q 013019          178 VNTSAYF-FKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-AGGHIVTT  255 (451)
Q Consensus       178 ~~sst~~-~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~-~GD~VIv~  255 (451)
                      .+|+|.+ -++.++...+..   ++..|+  ++|+..+||+.+++++|.+.++.+.+|..+...++..+++ +||++++.
T Consensus        46 LrSDTgT~apS~~m~aAM~~---GDD~Y~--gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~  120 (467)
T TIGR02617        46 LLTDSGTGAVTQSMQAAMMR---GDEAYS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLD  120 (467)
T ss_pred             CccCCCCCCCCHHHHHHHHc---CCcccc--cCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhccccccccccc
Confidence            4566776 377777666654   344576  8899999999999999999999999999999999988888 78877754


Q ss_pred             CC-------C-CcchHHHHHHhhhcCCcEEEEe--------------C-CCCHHHHHHhhcC---CCeEEEEEeCCCCCc
Q 013019          256 TD-------C-YRKTRIFIETVLPKMGITATVI--------------D-PADMEGLEAALNN---NNVSLFFTESPTNPF  309 (451)
Q Consensus       256 ~~-------~-Y~~t~~~l~~~l~~~Gi~v~~v--------------d-~~D~d~Le~ai~~---~~tklV~lesPsNPt  309 (451)
                      ..       . |..+..    .....|+....+              + ..|+++|+++|++   .++-.+.++-.+|-.
T Consensus       121 ~~~~~v~hn~~fett~g----~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~  196 (467)
T TIGR02617       121 RSKMVAFSNYFFDTTQG----HSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSA  196 (467)
T ss_pred             ccccccceEEEEecchH----HHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecC
Confidence            43       2 221221    112234332221              1 2389999999974   223344443334543


Q ss_pred             -cccc---cHHHHHHHHHhcCCEEEEecC--C--CC-------CCcccc---c----cCCCcEEEECCcccCCcccccee
Q 013019          310 -LRCV---DVKLVSDLCHKKGAIVCIDGT--F--AT-------PLNQKA---L----SLGADLVLHSATKFIGGHNDVLA  367 (451)
Q Consensus       310 -G~v~---DL~~IaelA~~~g~~lVVD~t--f--a~-------~~~~~p---l----~~GaDiVv~S~SK~l~G~gdv~g  367 (451)
                       |.+.   .++++.++|++||+.++.|.+  +  +.       .+...+   +    -..+|.+..|++|-++.+   +|
T Consensus       197 GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp---vG  273 (467)
T TIGR02617       197 GGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP---MG  273 (467)
T ss_pred             CCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc---cc
Confidence             5555   478899999999999999997  2  11       111111   1    135899999999999987   58


Q ss_pred             EEEEeCHH----HHHHHHHHhHh-----hCCCccHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 013019          368 GSISGSGK----LVTQIRNLHHV-----LGGALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       368 G~Iv~~~e----li~~lr~~~~~-----~G~~ls~~~a~l~lrgL~tl--~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      |+++++++    +.++++.....     .-+.++..+...+..||+..  ...+.......+.|.+.|.+.
T Consensus       274 g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~  344 (467)
T TIGR02617       274 GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEI  344 (467)
T ss_pred             ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhC
Confidence            99998764    33444432211     11245555555555566542  223444455677888888765

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=7.9e-12  Score=127.87  Aligned_cols=210  Identities=20%  Similarity=0.243  Sum_probs=165.5

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHH
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  289 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le  289 (451)
                      ....++|+.+|++.|.+++++|+-|-+.+...+.+++.+|.-|+.....|.+..    .-++.-|..++....+|.++||
T Consensus       182 ~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~----~GaRLSgAtiRVfkHNdm~~LE  257 (519)
T KOG1357|consen  182 EEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSLLGKGSLIISDELNHASLI----TGARLSGATTRVFRHNDMQGLE  257 (519)
T ss_pred             HHHHHHHHHHHHhcCCcceEEEeccccccccCcceeecCCcceeeccccchhee----ccccccCceEEEEecCCHHHHH
Confidence            456789999999999999999999999998999999999999988887777643    3345568888888888888888


Q ss_pred             HhhcCC------------CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc----------ccccCC
Q 013019          290 AALNNN------------NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ----------KALSLG  347 (451)
Q Consensus       290 ~ai~~~------------~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~----------~pl~~G  347 (451)
                      +.+++.            +.-+|+.|...+.-|.+.++.++.++++++.+.++.||++..+...          .+-...
T Consensus       258 r~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~d  337 (519)
T KOG1357|consen  258 RLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPED  337 (519)
T ss_pred             HHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchh
Confidence            887531            2347788888889999999999999999999999999997543221          111223


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh--HhhCCCccHHHHHHHHHhhHHH---------HHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---------HLRVQQQNST  416 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~--~~~G~~ls~~~a~l~lrgL~tl---------~~Rl~~~~~n  416 (451)
                      +||.+..++|.++..    ||++.+++++++.++...  ...+..++|..+...+.+++.+         .+++++..+|
T Consensus       338 vDImMGtftKSfga~----GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~n  413 (519)
T KOG1357|consen  338 VDIMMGTFTKSFGAA----GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAEN  413 (519)
T ss_pred             heeecceehhhcccc----cceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhh
Confidence            689999999999876    699999999999887543  2345667787777777777654         4667888888


Q ss_pred             HHHHHHHHHcC
Q 013019          417 ALRMAEILEAH  427 (451)
Q Consensus       417 A~~Lae~L~~~  427 (451)
                      ...+...|++.
T Consensus       414 s~yfr~~l~~~  424 (519)
T KOG1357|consen  414 SRYFRWELQKM  424 (519)
T ss_pred             hHHHHHhhhcC
Confidence            88887777654

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.31  E-value=1.9e-10  Score=118.63  Aligned_cols=221  Identities=17%  Similarity=0.069  Sum_probs=141.9

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc-cCC-CeEEEcCCCCcchH-HHHHH--------hhhcCC
Q 013019          206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-PAG-GHIVTTTDCYRKTR-IFIET--------VLPKMG  274 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all-~~G-D~VIv~~~~Y~~t~-~~l~~--------~l~~~G  274 (451)
                      .+.++...+|+++|+++.+.+.+++++||++|+..++.... .+| ++||..+..|.+.. ..+..        .+...-
T Consensus        62 ~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~  141 (364)
T PRK04013         62 MFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLV  141 (364)
T ss_pred             CcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCC
Confidence            46788889999999999887888999999999999987553 345 78999988887743 22210        011111


Q ss_pred             cEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccc-cc---HHHHHHHHHhcCCEEEEecCCCCC-----Ccccccc
Q 013019          275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC-VD---VKLVSDLCHKKGAIVCIDGTFATP-----LNQKALS  345 (451)
Q Consensus       275 i~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v-~D---L~~IaelA~~~g~~lVVD~tfa~~-----~~~~pl~  345 (451)
                      ..+..++..|++.+++.+.+ ++++|++|......|.. .|   +++|.++|++||+++|+||++...     ....-..
T Consensus       142 ~~~~~~~~~d~~~l~~~i~~-~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~g  220 (364)
T PRK04013        142 PGFKHIPFNDVEAAKEAITK-ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYK  220 (364)
T ss_pred             CCcEEecCCCHHHHHHHhcC-CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcC
Confidence            23445566788999999976 49999999776544443 45   899999999999999999985421     1112223


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~  425 (451)
                      .-.|+++  +.|.+++.  ...|.++.++++.    ..........+|..+..++..|+.+...  ...++++++.+.|.
T Consensus       221 v~PDiv~--~gK~lggG--~P~~a~~~~~~~~----~~~~~~T~~gnp~~~aaa~a~l~~i~~~--~l~~~~~~~l~~l~  290 (364)
T PRK04013        221 VEPDIVT--MGKGIGNG--VPVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRE--RLVEKAGEKFIEIK  290 (364)
T ss_pred             CCCCEEE--ecccccCC--ceeEEEEeccccc----CCCcCCCCCcCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHhc
Confidence            3457777  69999874  4456666665541    1111111234677777666666665432  23333333333342


Q ss_pred             cCCCeEEEecCCC
Q 013019          426 AHPKVLLLFITLL  438 (451)
Q Consensus       426 ~~p~V~~V~yPgL  438 (451)
                       +|.|..|+.-||
T Consensus       291 -~~~v~~vRG~Gl  302 (364)
T PRK04013        291 -GERVVTTRGRGL  302 (364)
T ss_pred             -cCcceeeeeCcE
Confidence             366666665543

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.30  E-value=2.5e-10  Score=118.95  Aligned_cols=210  Identities=13%  Similarity=0.094  Sum_probs=133.8

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc------CC-CeEEEcCCCCcc-hHHHHHHhhhcC-----
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------AG-GHIVTTTDCYRK-TRIFIETVLPKM-----  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~------~G-D~VIv~~~~Y~~-t~~~l~~~l~~~-----  273 (451)
                      +.++...+|.++|.+..+.+.+++++||++|+..++.....      +| ++||+.+..|.+ +...+.. ....     
T Consensus        75 ~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~-s~~~~~~~~  153 (395)
T PRK03715         75 FYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSA-SGKPGWDTI  153 (395)
T ss_pred             ccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhh-cCCcccccC
Confidence            44566677777777765567899999999999999876642      23 567777776655 3332211 1100     


Q ss_pred             ----CcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC------C
Q 013019          274 ----GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------L  339 (451)
Q Consensus       274 ----Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~------~  339 (451)
                          -..+..++..|++++++.+.+ ++.+|++|...+..|...+    +++|.++|++||+++|+||++...      +
T Consensus       154 ~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~  232 (395)
T PRK03715        154 FAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLF  232 (395)
T ss_pred             CCCCCCCceeeCCchHHHHHHHcCC-CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchh
Confidence                001222344688999999976 4899999987777777766    999999999999999999996521      1


Q ss_pred             ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCC--CccHHHHHHHHHhhHHHHH--HHHHHHH
Q 013019          340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAAYLIIRGMKTLHL--RVQQQNS  415 (451)
Q Consensus       340 ~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~--~ls~~~a~l~lrgL~tl~~--Rl~~~~~  415 (451)
                      ..+-.....||++  ++|.+++.  ..+|.+++++++.....   ...+.  ..+|..+..++..|+.+..  .+++..+
T Consensus       233 a~~~~gv~PDi~t--~gK~lg~G--~p~~av~~~~~i~~~~~---~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~  305 (395)
T PRK03715        233 AYELSGIEPDIMT--LGKGIGGG--VPLAALLAKAEVAVFEA---GDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRA  305 (395)
T ss_pred             hHhhcCCCCceee--ehhhhhCC--cceEEEEEccccccccC---CCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            1122223457765  67999873  34677777777642111   11111  2356666666656655532  3455556


Q ss_pred             HHHHHHHHHH
Q 013019          416 TALRMAEILE  425 (451)
Q Consensus       416 nA~~Lae~L~  425 (451)
                      ....+.+.|+
T Consensus       306 ~g~~l~~~L~  315 (395)
T PRK03715        306 RGEYLKEKLL  315 (395)
T ss_pred             HHHHHHHHHH
Confidence            6666666665

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.30  E-value=6.3e-11  Score=121.46  Aligned_cols=205  Identities=11%  Similarity=0.068  Sum_probs=132.5

Q ss_pred             hhHHHHHHHHHhhhCC--Cc-EEEeCC-HHHHHHHHHHHHcc---CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          210 PTTVVVEEKMSALEGA--ES-TVIMAS-GMSASTVMLLALVP---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~-~vv~sS-G~aAi~~al~all~---~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...++.++.+++++|+  ++ ++++++ |++++.+++..+++   +||+|++.  .|+   ..+...+++.|+++++++.
T Consensus        44 ~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g--~~~---~~~~~~a~~~g~~~~~~~~  118 (355)
T cd00611          44 AIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVTG--AWS---AKAAKEAKRYGGVVVIVAA  118 (355)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECC--HHH---HHHHHHHHhcCCCcEEEec
Confidence            3466789999999995  33 455544 88999999999987   56666551  222   1122355777888887653


Q ss_pred             C------C-HHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEEC
Q 013019          283 A------D-MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (451)
Q Consensus       283 ~------D-~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S  354 (451)
                      .      + ++..+..+++ ++++|.+..-.|.||...+     ++++.+|++++||.+.+.+. ..+.-++  |+++.|
T Consensus       119 ~~~g~~~~~~~~~~~~~~~-~~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~--~~~~ss  190 (355)
T cd00611         119 KEEGKYTKIPDVETWDLAP-DAAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKF--GVIYAG  190 (355)
T ss_pred             ccccCCCCCCCHhhcCCCC-CCCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHHh--CEEEee
Confidence            2      3 3333344555 5999999888899998733     45556999999999976542 2222233  356677


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHH-------hH--h---hCCCccHHHHHHHHHhhHH------HHHHHHHHHHH
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HH--V---LGGALNPNAAYLIIRGMKT------LHLRVQQQNST  416 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-------~~--~---~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~n  416 (451)
                      .+|.+|.+|   .|+++.++++++++...       ..  .   ...+++-...+.+..+++.      ++.+.+++.+.
T Consensus       191 ~~K~lGP~G---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l  267 (355)
T cd00611         191 AQKNLGPAG---VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQK  267 (355)
T ss_pred             cccccCCCc---eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999998776   78888998887765431       10  0   0123333334444444443      33445666778


Q ss_pred             HHHHHHHHHcCCCe
Q 013019          417 ALRMAEILEAHPKV  430 (451)
Q Consensus       417 A~~Lae~L~~~p~V  430 (451)
                      ++.+.++|++.|++
T Consensus       268 ~~~l~~~l~~~~gl  281 (355)
T cd00611         268 AQLLYDTIDNSNGF  281 (355)
T ss_pred             HHHHHHHHHhCccc
Confidence            88888899988764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.28  E-value=3.6e-10  Score=115.89  Aligned_cols=205  Identities=12%  Similarity=0.062  Sum_probs=137.7

Q ss_pred             hhHHHHHHHHHhhhCC-C--cEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC----
Q 013019          210 PTTVVVEEKMSALEGA-E--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID----  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga-e--~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd----  281 (451)
                      ...+.+++.|+++++. +  +++++ +||+.|+.+++..++++||++++....+.+.+  +..+++++|+ +..+.    
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r--~~~~a~~~g~-~~~~~~~~~  113 (349)
T TIGR01364        37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKK--AAKEAKKYGV-VNVVASGKE  113 (349)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCC-cEEEecccc
Confidence            4466789999999995 2  35566 45889999999999999999877665554433  3466777787 44433    


Q ss_pred             -----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECC
Q 013019          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSA  355 (451)
Q Consensus       282 -----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~  355 (451)
                           ..++++++  +++ ++++|.+..-.+.||...+     ++++.++++++||.+.+.+. ..+.-+  .|+++.|.
T Consensus       114 ~~~~~~~~~~~~~--~~~-~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~~--~d~~~~ss  183 (349)
T TIGR01364       114 GNYTKIPDPSTWE--ISE-DAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVSK--FGLIYAGA  183 (349)
T ss_pred             CCCCCCCCHHhcC--CCC-CCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHHH--ccEEEEec
Confidence                 23455444  334 4889988777778898765     67777899999999965432 222223  35999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHH-------hHhh--C---CCccHHHHHHHHHhhHH------HHHHHHHHHHHH
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVL--G---GALNPNAAYLIIRGMKT------LHLRVQQQNSTA  417 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~-------~~~~--G---~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA  417 (451)
                      +|.++.+|   .|+++.++++++++...       ....  +   .+.+-...+.+..+|+.      ++.+.+++.+.+
T Consensus       184 qK~lgP~G---lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~  260 (349)
T TIGR01364       184 QKNIGPAG---LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKA  260 (349)
T ss_pred             ccccCCCc---eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99998776   78999999888765321       1001  1   12333333333333332      455567777888


Q ss_pred             HHHHHHHHcCCCe
Q 013019          418 LRMAEILEAHPKV  430 (451)
Q Consensus       418 ~~Lae~L~~~p~V  430 (451)
                      +.+.++|++.|++
T Consensus       261 ~~l~~~l~~~~gl  273 (349)
T TIGR01364       261 QLLYDTIDNSNGF  273 (349)
T ss_pred             HHHHHHHHhCCCe
Confidence            9999999998763

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.28  E-value=2.8e-10  Score=119.56  Aligned_cols=223  Identities=19%  Similarity=0.213  Sum_probs=143.4

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHh-------hh-c--C
Q 013019          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV-------LP-K--M  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~-gae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~-------l~-~--~  273 (451)
                      +.++....|.++|+++. +.+.+++++||++|+..++.....  .+++||..++.|.+........       .. .  -
T Consensus        87 ~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  166 (426)
T PRK00062         87 APTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSP  166 (426)
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCC
Confidence            45677788999999876 356788889999999999886543  2678999999988853221111       00 0  0


Q ss_pred             Cc------EEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCc-
Q 013019          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-  340 (451)
Q Consensus       274 Gi------~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~-  340 (451)
                      +.      ....++..|++++++.+++  .++.+|++|...+..|.+.+    +++|.++|++||+++|+||++..... 
T Consensus       167 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g  246 (426)
T PRK00062        167 GVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVA  246 (426)
T ss_pred             CCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccC
Confidence            11      1222344688999888853  25889999966666888877    89999999999999999999752211 


Q ss_pred             ----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh---HhhCCCccHHHHHHHHHhhHHHHH--HHH
Q 013019          341 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTLHL--RVQ  411 (451)
Q Consensus       341 ----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~---~~~G~~ls~~~a~l~lrgL~tl~~--Rl~  411 (451)
                          ...+....|+  .+++|.+++.  ..+|++++++++++.++...   .......++..+..++..|+.+..  ..+
T Consensus       247 ~~~~~~~~~~~pDi--~~~gK~l~~G--~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~  322 (426)
T PRK00062        247 LGGAQGYYGVTPDL--TTLGKIIGGG--LPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYE  322 (426)
T ss_pred             CccHHHHhCCCcch--HhhhhHhhCC--CcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHH
Confidence                1111112354  5689999853  34677888888888875321   111224567766666666665543  344


Q ss_pred             HHHHHHHHHHHHHH----cCCCeEEE
Q 013019          412 QQNSTALRMAEILE----AHPKVLLL  433 (451)
Q Consensus       412 ~~~~nA~~Lae~L~----~~p~V~~V  433 (451)
                      +..+....+.+.|+    +++.+..+
T Consensus       323 ~~~~~~~~~~~~l~~~~~~~~~~~~v  348 (426)
T PRK00062        323 ELEALTKRLAEGLKEAAKKAGIPLTV  348 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEE
Confidence            55555555555554    45654433

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.28  E-value=1.5e-10  Score=123.04  Aligned_cols=155  Identities=23%  Similarity=0.321  Sum_probs=120.9

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC---------
Q 013019          212 TVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---------  281 (451)
Q Consensus       212 ~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd---------  281 (451)
                      ..+.++..|+.+|+++..++.+|+ .|+..++++++++||.|++++++|-+....+    -..|....++.         
T Consensus        72 i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~gl----ilaGa~Pvyl~p~~np~~gi  147 (557)
T COG1982          72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGL----ILAGATPVYLEPSRNPLYGI  147 (557)
T ss_pred             HHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHH----HHcCCceEEecCCCCccccc
Confidence            567899999999999999998998 8999999999999999999999998865432    22344444432         


Q ss_pred             --CCCHHHHHHhhcCC-Ce-EEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC------CccccccCCCcEE
Q 013019          282 --PADMEGLEAALNNN-NV-SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADLV  351 (451)
Q Consensus       282 --~~D~d~Le~ai~~~-~t-klV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~------~~~~pl~~GaDiV  351 (451)
                        ..+.+.+++++.++ .. |++++.+|+ ..|.+.|+++|.+.+++.++|+.+|++....      ......+.|+|++
T Consensus       148 ~ggI~~~~~~~~l~~~~~~~k~~vitnpT-YdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~  226 (557)
T COG1982         148 IGGIPLETFKEALLAHPDAEKLAVITNPT-YDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFV  226 (557)
T ss_pred             cCCCCHHHHHHHHHhChhhheeEEEecCc-cceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEE
Confidence              23678888877543 24 788887776 6799999999999999999999999995432      1222344689999


Q ss_pred             EECCcccCCccccceeEEEEeC
Q 013019          352 LHSATKFIGGHNDVLAGSISGS  373 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~  373 (451)
                      ++|.||.+++.+  .+-+|-.+
T Consensus       227 tqS~HK~l~alS--QaS~iHv~  246 (557)
T COG1982         227 TQSTHKLLAALS--QASMIHVK  246 (557)
T ss_pred             Eechhhhhhhhh--hhHHHhhC
Confidence            999999999876  45555554

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.28  E-value=6.5e-10  Score=117.40  Aligned_cols=229  Identities=14%  Similarity=0.150  Sum_probs=143.0

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc----CC-CeEEEcCCCCcch-HHHHHHh----h-hcC
Q 013019          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP----AG-GHIVTTTDCYRKT-RIFIETV----L-PKM  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~----~G-D~VIv~~~~Y~~t-~~~l~~~----l-~~~  273 (451)
                      +.+|...+|.++|+++...  +.+++++||++|+..++.....    .| .+||.....|.+. ...+...    . ..+
T Consensus       114 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~  193 (442)
T TIGR03372       114 LLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPF  193 (442)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCC
Confidence            3578888899999988753  4567778999999998874432    23 5688888777663 2222110    0 111


Q ss_pred             ---CcEEEEeCCCCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCC----
Q 013019          274 ---GITATVIDPADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----  337 (451)
Q Consensus       274 ---Gi~v~~vd~~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~----  337 (451)
                         .-.+..++..|.+++++.++.     .++.+|++|.....-|.+.+    +++|.++|++||+++|+||++..    
T Consensus       194 ~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt  273 (442)
T TIGR03372       194 MPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT  273 (442)
T ss_pred             CCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc
Confidence               112455667788888777741     35899999988877787777    99999999999999999999632    


Q ss_pred             C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc--cHHHHHHHHHhhHHHHHH--HH
Q 013019          338 P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLR--VQ  411 (451)
Q Consensus       338 ~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l--s~~~a~l~lrgL~tl~~R--l~  411 (451)
                      +  +..+-...-.||++  ++|.+++.- ...|.+++++++.+.+.......+.+.  +|..+..++..|+.+...  ++
T Consensus       274 G~~~a~e~~gv~PDivt--~gK~lg~G~-~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~  350 (442)
T TIGR03372       274 GKMFACEHEGVQPDILC--LAKALGGGV-MPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPA  350 (442)
T ss_pred             ccchhhhhcCCCCCeee--ehhhhcCCc-ccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence            1  11111222358876  899998631 125666778888777632111223333  677766666666655321  23


Q ss_pred             HHHHHHHHHHHHHH----cCC-CeEEEecCCC
Q 013019          412 QQNSTALRMAEILE----AHP-KVLLLFITLL  438 (451)
Q Consensus       412 ~~~~nA~~Lae~L~----~~p-~V~~V~yPgL  438 (451)
                      +..+...++.+.|+    ++| .|..|+..|+
T Consensus       351 ~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl  382 (442)
T TIGR03372       351 QAAIKGDFLLDGFQQLAAEYPDLIIEARGKGL  382 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEEEecceE
Confidence            33344444444443    466 5666655443

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.28  E-value=4.8e-10  Score=117.98  Aligned_cols=230  Identities=16%  Similarity=0.107  Sum_probs=138.2

Q ss_pred             CCCchhHHHHHHHHHhhh-CC-CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcc-hHHHHHHhh-----hc-CC
Q 013019          206 RYGNPTTVVVEEKMSALE-GA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRK-TRIFIETVL-----PK-MG  274 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~-ga-e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~-t~~~l~~~l-----~~-~G  274 (451)
                      .+.++...+|.++|+++. +. +..++++||++|+..++....  ....+|+..+..|.+ +...+....     .. ++
T Consensus        82 ~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~  161 (433)
T PRK08117         82 VIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQ  161 (433)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCC
Confidence            456788899999999998 33 444555899999999887532  123567777776665 332221100     00 00


Q ss_pred             ---cEEEEeCC-----------------CCHHHHHHhhc----CCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcC
Q 013019          275 ---ITATVIDP-----------------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG  326 (451)
Q Consensus       275 ---i~v~~vd~-----------------~D~d~Le~ai~----~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g  326 (451)
                         -.+.+++.                 .+++++++.++    .+++.+|++|......|.+.+    +++|.++|++||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g  241 (433)
T PRK08117        162 PLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHG  241 (433)
T ss_pred             CCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcC
Confidence               01122221                 14556666653    235889999988887888877    999999999999


Q ss_pred             CEEEEecCCCCC-Ccccc---ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh
Q 013019          327 AIVCIDGTFATP-LNQKA---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  402 (451)
Q Consensus       327 ~~lVVD~tfa~~-~~~~p---l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg  402 (451)
                      +++|+||++... .....   ..+|.+.-+.+++|.+++ | ...|++++++++++.+...........+|..+..++..
T Consensus       242 ~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~-G-~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~  319 (433)
T PRK08117        242 ILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIAS-G-LPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALAT  319 (433)
T ss_pred             CEEEEecchhccCccccchhHhhcCCCCCEeehhhhccC-C-CcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHH
Confidence            999999997631 11111   122432224689999985 3 56788899998887764322211123467776666666


Q ss_pred             hHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEecCC
Q 013019          403 MKTLHL--RVQQQNSTALRMAEILE----AHPKVLLLFITL  437 (451)
Q Consensus       403 L~tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~~V~yPg  437 (451)
                      |+.+..  .+++..+....+.+.|+    +++.+..|...|
T Consensus       320 L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G  360 (433)
T PRK08117        320 LEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIG  360 (433)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence            665432  23344444444544443    355554444333

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.28  E-value=5.5e-10  Score=117.29  Aligned_cols=230  Identities=13%  Similarity=0.131  Sum_probs=137.6

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHh-hh----cCC--
Q 013019          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV-LP----KMG--  274 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~-l~----~~G--  274 (451)
                      +.++...+|.++|.++.+.   +..++++||++|+..++....  ....+||...+.|.+........ ..    ..|  
T Consensus        81 ~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~  160 (425)
T PRK08088         81 LAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG  160 (425)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCC
Confidence            4567777888999887653   477888999998888776432  22345666688887744332221 10    001  


Q ss_pred             -----cEEEEeC--CC------CHHHHHHhhc----CCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEec
Q 013019          275 -----ITATVID--PA------DMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDG  333 (451)
Q Consensus       275 -----i~v~~vd--~~------D~d~Le~ai~----~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~  333 (451)
                           +....++  ..      ++++|+++++    .+++.+|++|...+.-|.+..    +++|.++|+++|+++|+||
T Consensus       161 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~De  240 (425)
T PRK08088        161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADE  240 (425)
T ss_pred             CCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence                 1100011  11      1556888775    235889999876654454443    8899999999999999999


Q ss_pred             CCCCC-Ccccc--c-cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--
Q 013019          334 TFATP-LNQKA--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--  407 (451)
Q Consensus       334 tfa~~-~~~~p--l-~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--  407 (451)
                      ++... .....  . ..+.+.-+.|++|.+++ | .+.|++++++++++.+...........++..+..++..|+.+.  
T Consensus       241 v~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~-G-~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~  318 (425)
T PRK08088        241 VQTGAGRTGTLFAMEQMGVAADLTTFAKSIAG-G-FPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQE  318 (425)
T ss_pred             cccCCCcCcchhHHhhcCCCCCEEEEeccccC-C-CcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence            97632 11111  1 23444446889999984 3 5789999999998887654433333456666666555555432  


Q ss_pred             ---HHHHHHHHHH-HHHHHHHHcCCCeEEEecCCC
Q 013019          408 ---LRVQQQNSTA-LRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       408 ---~Rl~~~~~nA-~~Lae~L~~~p~V~~V~yPgL  438 (451)
                         .++.+..+.. ..+.+.+.++|.+..|..+|+
T Consensus       319 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~  353 (425)
T PRK08088        319 NLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGA  353 (425)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccce
Confidence               1222222222 223333345677666655443

>PRK12403 putative aminotransferase; Provisional

Probab=99.26  E-value=1.7e-09  Score=114.88  Aligned_cols=228  Identities=18%  Similarity=0.183  Sum_probs=137.9

Q ss_pred             CchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------CCCe-EEEcCCCCcc-hHHHHHHh-h---hc
Q 013019          208 GNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AGGH-IVTTTDCYRK-TRIFIETV-L---PK  272 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~GD~-VIv~~~~Y~~-t~~~l~~~-l---~~  272 (451)
                      .++...+|.++|+++.+  .+.+++++||++|+..++.....       +++. |+.....|.+ +...+... .   ..
T Consensus        96 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~  175 (460)
T PRK12403         96 THPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE  175 (460)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc
Confidence            46778899999999986  36788899999999999876541       2334 4444555544 33222110 0   00


Q ss_pred             CC---cEEEEeCCC-------C----------HHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHHHHhc
Q 013019          273 MG---ITATVIDPA-------D----------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  325 (451)
Q Consensus       273 ~G---i~v~~vd~~-------D----------~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~  325 (451)
                      .+   -.+..++..       +          .+++++.+.   ++++.+|++|......|.+.+    +++|.++|++|
T Consensus       176 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~  255 (460)
T PRK12403        176 MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY  255 (460)
T ss_pred             cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc
Confidence            00   012222211       1          245655552   134889999988777777766    99999999999


Q ss_pred             CCEEEEecCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCC--CccHHH
Q 013019          326 GAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGG--ALNPNA  395 (451)
Q Consensus       326 g~~lVVD~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~--~ls~~~  395 (451)
                      |+++|+||++...      +...-...-.||++  ++|.++|.- +..|.+++++++.+.+.....  ..+.  ..+|..
T Consensus       256 g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~-~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~  332 (460)
T PRK12403        256 DVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGY-VPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVA  332 (460)
T ss_pred             CCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--Ecccccccc-cceEEEEECHHHHHHHhcCCCccccCCCCCCCHHH
Confidence            9999999996321      11122222358887  899998641 134555678888777643111  1222  256777


Q ss_pred             HHHHHHhhHHHHH--HHHHHH-HHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          396 AYLIIRGMKTLHL--RVQQQN-STALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       396 a~l~lrgL~tl~~--Rl~~~~-~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      +..++..|+.+..  .+++.. ++..++.+.|    +++|.|..|+.-||
T Consensus       333 ~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl  382 (460)
T PRK12403        333 AAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGL  382 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecce
Confidence            7776666666543  234443 4555555544    45777777765544

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.24  E-value=4.5e-10  Score=127.76  Aligned_cols=158  Identities=20%  Similarity=0.274  Sum_probs=121.2

Q ss_pred             HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH-ccCC--CeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHH
Q 013019          212 TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAG--GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (451)
Q Consensus       212 ~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~al-l~~G--D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d  286 (451)
                      ..++++.|++|.|.  +++-++.+++++..++++++ +.+|  |+|++++..|+.+...+...++..|++++.++..+.+
T Consensus       150 l~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~  229 (993)
T PLN02414        150 LLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD  229 (993)
T ss_pred             HHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc
Confidence            34568899999997  45777888888888777766 3444  7899999999999888888888899999988764322


Q ss_pred             HHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCC--CCCccccccCCCcEEEECCcccC-----
Q 013019          287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA--TPLNQKALSLGADLVLHSATKFI-----  359 (451)
Q Consensus       287 ~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa--~~~~~~pl~~GaDiVv~S~SK~l-----  359 (451)
                          ...+ .+..+++..|+ .+|.+.|+++|+++||++|+++++ .+..  ......|-++|+||++.+.+||.     
T Consensus       230 ----~~~~-~v~~vlvq~P~-~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~  302 (993)
T PLN02414        230 ----YSSG-DVCGVLVQYPA-TDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGY  302 (993)
T ss_pred             ----cccC-ceEEEEEecCC-CCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCC
Confidence                2223 25566676665 599999999999999999999999 4422  22223577899999999999998     


Q ss_pred             CccccceeEEEEeCHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQ  379 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~  379 (451)
                      +|+.   .|+++.++++.+.
T Consensus       303 GGP~---aGflavr~~~~r~  319 (993)
T PLN02414        303 GGPH---AAFLATSQEYKRL  319 (993)
T ss_pred             CCCC---eeEEEECHHHHhh
Confidence            5554   7999999877553

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.24  E-value=1.8e-09  Score=114.30  Aligned_cols=228  Identities=14%  Similarity=0.131  Sum_probs=139.8

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHcc-CC-CeEEEcCCCCcch-HHHHHHhh------hcCC
Q 013019          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP-AG-GHIVTTTDCYRKT-RIFIETVL------PKMG  274 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~-~G-D~VIv~~~~Y~~t-~~~l~~~l------~~~G  274 (451)
                      +.++...+|.++|+++...   +.+.+++||++|+..++..... .| .+||..+..|.+. ...+...-      ..++
T Consensus        82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~  161 (445)
T PRK08593         82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYG  161 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCC
Confidence            5678888999999998753   3566668999999998874321 23 4677777777663 22221100      0011


Q ss_pred             ---cEEEEeCCCC-----------------HHHHHHhhc----CCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcC
Q 013019          275 ---ITATVIDPAD-----------------MEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG  326 (451)
Q Consensus       275 ---i~v~~vd~~D-----------------~d~Le~ai~----~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g  326 (451)
                         ..+..++..|                 ++++++.+.    .+++.+|++|...+..|.+.+    +++|.++|++||
T Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g  241 (445)
T PRK08593        162 PLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHG  241 (445)
T ss_pred             CCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence               1122222111                 134554442    235899999998887777755    899999999999


Q ss_pred             CEEEEecCCCCC-Ccc-----ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHH
Q 013019          327 AIVCIDGTFATP-LNQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII  400 (451)
Q Consensus       327 ~~lVVD~tfa~~-~~~-----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~l  400 (451)
                      +++|+||++... ...     .-...-.|++  +++|.+++.  ..+|++++++++++.+...........+|..+..++
T Consensus       242 ~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~--t~gK~l~~G--~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~  317 (445)
T PRK08593        242 ILFAVDDIQQGLGRTGKWSSISHFNITPDLM--SFGKSLAGG--MPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAAL  317 (445)
T ss_pred             CEEEEechhhCCCcCchHHHHHhcCCCCCEe--eecccccCC--cccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHH
Confidence            999999996321 111     1112224766  589999853  457889999998887753222233345677666555


Q ss_pred             HhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEecCCC
Q 013019          401 RGMKTLHL--RVQQQNSTALRMAEILE----AHPKVLLLFITLL  438 (451)
Q Consensus       401 rgL~tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~~V~yPgL  438 (451)
                      ..|+.+..  .+++..+....+.+.|+    ++|.|..|+.-||
T Consensus       318 a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl  361 (445)
T PRK08593        318 ATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGL  361 (445)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccce
Confidence            55555432  23444445555555554    4777777765554

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.23  E-value=2.3e-09  Score=112.58  Aligned_cols=227  Identities=14%  Similarity=0.161  Sum_probs=140.0

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchHHHHHHhhhc---
Q 013019          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLPK---  272 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~~~l~~~l~~---  272 (451)
                      .+.++...+|.++|+++..  .+.+.+++||++|+..++.....       +| .+||.....|.+...........   
T Consensus        81 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~  160 (423)
T PRK05964         81 GFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGM  160 (423)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccc
Confidence            4567888889999999874  46788889999999998875432       23 47888888887633211111100   


Q ss_pred             ------CCcEEEEeCC--CC-----HHHHHHhhcC--CCeEEEEEeC-CCCCcccccc----HHHHHHHHHhcCCEEEEe
Q 013019          273 ------MGITATVIDP--AD-----MEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIVCID  332 (451)
Q Consensus       273 ------~Gi~v~~vd~--~D-----~d~Le~ai~~--~~tklV~les-PsNPtG~v~D----L~~IaelA~~~g~~lVVD  332 (451)
                            ....+.+++.  .|     ++++++.+.+  +++.+|++|. ..+..|...+    +++|.++|++||+++|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~D  240 (423)
T PRK05964        161 HALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFD  240 (423)
T ss_pred             cccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence                  0011223332  24     7788888842  2488999987 4666665543    899999999999999999


Q ss_pred             cCCCCC-C-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH---hH-hhCC--CccHHHHHHHH
Q 013019          333 GTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---HH-VLGG--ALNPNAAYLII  400 (451)
Q Consensus       333 ~tfa~~-~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~---~~-~~G~--~ls~~~a~l~l  400 (451)
                      |++... .     .........|++  +++|.++|.. ...|++++++++.+.+...   .. ..+.  ..++..+..++
T Consensus       241 Ev~tg~gr~G~~~a~~~~~v~pDi~--~~~K~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~  317 (423)
T PRK05964        241 EIATGFGRTGTLFACEQAGVSPDIM--CLSKGLTGGY-LPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAAN  317 (423)
T ss_pred             chhhCCCcCcchhHHHhcCCCCCee--eeehhhhcCc-ccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHH
Confidence            996321 1     111122235765  4679997653 3467788999988877531   11 1222  24666666555


Q ss_pred             HhhHHHH--HHHHHHHHHHHHHHHHHHc---CCCeEEEec
Q 013019          401 RGMKTLH--LRVQQQNSTALRMAEILEA---HPKVLLLFI  435 (451)
Q Consensus       401 rgL~tl~--~Rl~~~~~nA~~Lae~L~~---~p~V~~V~y  435 (451)
                      ..++.+.  ..+++..+..+.+.+.|++   +|.|..|..
T Consensus       318 a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg  357 (423)
T PRK05964        318 ASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVADVRV  357 (423)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHhhccCCCeEEeec
Confidence            5555443  2345555666666666654   455544433

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.22  E-value=2.3e-09  Score=112.57  Aligned_cols=227  Identities=15%  Similarity=0.155  Sum_probs=139.9

Q ss_pred             ccCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHcc-C-CCeEEEcCCCCcchHHHHHHhhh-----c-
Q 013019          204 YGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP-A-GGHIVTTTDCYRKTRIFIETVLP-----K-  272 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all~-~-GD~VIv~~~~Y~~t~~~l~~~l~-----~-  272 (451)
                      +..+.++...+|.++|+++..   .+...+++||++|+..++..... . ..+|+.....|.+.....-.+-.     + 
T Consensus        77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~  156 (421)
T PRK06777         77 YQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKV  156 (421)
T ss_pred             ccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCccccc
Confidence            334567778889899998864   35788889999999998874321 2 34688877777664322111100     0 


Q ss_pred             -CC---cEEEEeCCC----------CHHHHHHhhc----CCCeEEEEEeCCCCCccc-ccc---HHHHHHHHHhcCCEEE
Q 013019          273 -MG---ITATVIDPA----------DMEGLEAALN----NNNVSLFFTESPTNPFLR-CVD---VKLVSDLCHKKGAIVC  330 (451)
Q Consensus       273 -~G---i~v~~vd~~----------D~d~Le~ai~----~~~tklV~lesPsNPtG~-v~D---L~~IaelA~~~g~~lV  330 (451)
                       ++   -.+..++..          +++.+++.++    ++++.+|++|...+..|. +.+   +++|.++|++||+++|
T Consensus       157 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI  236 (421)
T PRK06777        157 GFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLI  236 (421)
T ss_pred             CCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence             00   011112211          2566777764    235899999988877774 344   8999999999999999


Q ss_pred             EecCCCCC-Cccc-----cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH
Q 013019          331 IDGTFATP-LNQK-----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (451)
Q Consensus       331 VD~tfa~~-~~~~-----pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~  404 (451)
                      +||++... ....     ....-.|++  +++|.+++ | ...|++++++++++.+...........++..+..++..|+
T Consensus       237 ~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~~-G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~  312 (421)
T PRK06777        237 ADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLGG-G-MPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLD  312 (421)
T ss_pred             EechhhCCccCCchhhhhhcCCCCCEE--eeehhhcC-C-CceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHH
Confidence            99996532 1111     112225765  58999984 4 5688999999888776543322222346776666666665


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHc----CCCeEEEe
Q 013019          405 TLH--LRVQQQNSTALRMAEILEA----HPKVLLLF  434 (451)
Q Consensus       405 tl~--~Rl~~~~~nA~~Lae~L~~----~p~V~~V~  434 (451)
                      .+.  ..+++..+..+.+.+.|++    +|.+..|.
T Consensus       313 ~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vr  348 (421)
T PRK06777        313 VIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIR  348 (421)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEec
Confidence            443  2244455555566665543    56555553

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.22  E-value=8.6e-10  Score=112.59  Aligned_cols=230  Identities=17%  Similarity=0.173  Sum_probs=141.6

Q ss_pred             cCCCchhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHHc-------c-CCCeEEEcCCCCcch-HHHHH------
Q 013019          205 GRYGNPTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLALV-------P-AGGHIVTTTDCYRKT-RIFIE------  267 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~--gae~~vv~sSG~aAi~~al~all-------~-~GD~VIv~~~~Y~~t-~~~l~------  267 (451)
                      ..+.++...+|.++|.++.  +.+...+++||++|+..++....       . ...+|+.....|.+. ...+.      
T Consensus        54 ~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~  133 (339)
T PF00202_consen   54 SGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPP  133 (339)
T ss_dssp             TTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTH
T ss_pred             cceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCcc
Confidence            5567788899999999999  44778888999999999987554       2 236788888888762 21221      


Q ss_pred             --HhhhcCCcEEEEeCCCCHHH----------HHH---hhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCE
Q 013019          268 --TVLPKMGITATVIDPADMEG----------LEA---ALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (451)
Q Consensus       268 --~~l~~~Gi~v~~vd~~D~d~----------Le~---ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~  328 (451)
                        .........+..++..++..          +++   ....+++.+|++|....-.|....    +++|.++|++||++
T Consensus       134 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gil  213 (339)
T PF00202_consen  134 YRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGIL  213 (339)
T ss_dssp             HHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-E
T ss_pred             ccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccc
Confidence              11111212345556555544          222   222335899999976655554432    79999999999999


Q ss_pred             EEEecCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh
Q 013019          329 VCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  402 (451)
Q Consensus       329 lVVD~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg  402 (451)
                      +|+||++...      +..+....-.|+++.  +|.+++.  ...|.+++++++.+.+...........+|..+..++..
T Consensus       214 lI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~--gK~l~gG--~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~  289 (339)
T PF00202_consen  214 LIADEVQTGFGRTGKFFASEHYGVDPDIVTF--GKGLGGG--LPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALAT  289 (339)
T ss_dssp             EEEEETTTTTTTTSSSSGHHHHTSSSSEEEE--EGGGGTT--SSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHH
T ss_pred             eecccccccccccCCccceecccccCccccc--ccchhhh--hhcccccccchhhccccccccccccccchHhhhhhhhH
Confidence            9999996431      222333445699985  5999875  56788888888777653322111122356666665555


Q ss_pred             hHHHHHH--HHHHHHHHHHHHHHH---Hc-CCCeEEEecCCC
Q 013019          403 MKTLHLR--VQQQNSTALRMAEIL---EA-HPKVLLLFITLL  438 (451)
Q Consensus       403 L~tl~~R--l~~~~~nA~~Lae~L---~~-~p~V~~V~yPgL  438 (451)
                      |+.+...  .++..+...++.+.|   .+ ++.|..|+--||
T Consensus       290 l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl  331 (339)
T PF00202_consen  290 LEILEEEDLLERVRELGERLREGLRELAARYPLIGEVRGIGL  331 (339)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEETT
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeCe
Confidence            5554432  333333344443333   33 488888765554

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.21  E-value=2.5e-09  Score=113.05  Aligned_cols=226  Identities=15%  Similarity=0.135  Sum_probs=136.9

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcc-hHHHHHHh-h----h-cCC--
Q 013019          208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRK-TRIFIETV-L----P-KMG--  274 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~-t~~~l~~~-l----~-~~G--  274 (451)
                      .++...+|.++|.++.+.  +.+.+++||++|+..++.....  ...+|+.-...|.+ +...+... .    . .++  
T Consensus        82 ~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~  161 (443)
T PRK08360         82 FPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGEL  161 (443)
T ss_pred             CcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCC
Confidence            467778888999988754  4677778999999998875421  23467776666655 32222110 0    0 011  


Q ss_pred             cEEEEeCC-----------------CCHHHHHHhhc----CCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEE
Q 013019          275 ITATVIDP-----------------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIV  329 (451)
Q Consensus       275 i~v~~vd~-----------------~D~d~Le~ai~----~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~l  329 (451)
                      ..+.+++.                 .+++.+++.++    .+++++|++|...||+|.+.+    +++|.++|++||+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~ll  241 (443)
T PRK08360        162 SDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILL  241 (443)
T ss_pred             CCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            11222211                 12344556663    235999999976799997764    889999999999999


Q ss_pred             EEecCCCCC-Cccc-----cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh
Q 013019          330 CIDGTFATP-LNQK-----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM  403 (451)
Q Consensus       330 VVD~tfa~~-~~~~-----pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL  403 (451)
                      |+||++... ....     ....-.|++  +++|.+++ | ..+|++++++++++.+...........++..+..++..|
T Consensus       242 I~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~~-G-~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l  317 (443)
T PRK08360        242 VVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLGG-G-LPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVI  317 (443)
T ss_pred             EEeccccCCCcCccchhhhhcCCCCCEE--EecccccC-C-ceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHH
Confidence            999997532 1111     112224665  57999994 3 568899999998888764332223334566665555555


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEecCC
Q 013019          404 KTLHL--RVQQQNSTALRMAEILE----AHPKVLLLFITL  437 (451)
Q Consensus       404 ~tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~~V~yPg  437 (451)
                      +.+..  .+++..+....+.+.|+    ++|.|..|+.-|
T Consensus       318 ~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~G  357 (443)
T PRK08360        318 EEIEEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIG  357 (443)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccc
Confidence            55432  23344444444444443    466666664433

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.21  E-value=1.4e-09  Score=112.44  Aligned_cols=221  Identities=20%  Similarity=0.268  Sum_probs=145.6

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhh-------
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL-------  270 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l-------  270 (451)
                      +..|+. ++..--++.+.|.++.+. |..-+++||++|.+.+++...  -..|+|+..+.+|.+....+---.       
T Consensus        85 G~~fg~-Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~  163 (432)
T COG0001          85 GLSFGA-PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATL  163 (432)
T ss_pred             cCCCCC-CCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccC
Confidence            455654 333334567888888876 888999999999999887432  235889999999988655432110       


Q ss_pred             ---hcCCc------EEEEeCCCCHHHHHHhhcCC--CeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCC
Q 013019          271 ---PKMGI------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTF  335 (451)
Q Consensus       271 ---~~~Gi------~v~~vd~~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tf  335 (451)
                         ...|+      .+..++.+|++.+++++++.  ++..|++|-...-.|.+.+    +++|.++|+++|++||.||+.
T Consensus       164 g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEVi  243 (432)
T COG0001         164 GSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI  243 (432)
T ss_pred             CCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch
Confidence               11122      23445678999999999764  6899999876555666554    789999999999999999984


Q ss_pred             CCC-----CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh-hCCCc--cHHHHHHHHHhhHHHH
Q 013019          336 ATP-----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-LGGAL--NPNAAYLIIRGMKTLH  407 (451)
Q Consensus       336 a~~-----~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~-~G~~l--s~~~a~l~lrgL~tl~  407 (451)
                      -..     -.|.-...-.|+.+  +.|.++|.  +-.|++.++.++++.+...... .++++  +|.........|+.+.
T Consensus       244 TGFR~~~gGaq~~~gi~PDltt--lGKiIGGG--lP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~  319 (432)
T COG0001         244 TGFRVALGGAQGYYGVEPDLTT--LGKIIGGG--LPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELM  319 (432)
T ss_pred             hhcccCCcccccccCcCcchhh--hhhhhcCC--cceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHH
Confidence            321     22333333457665  89999976  4689999999999877654322 22222  4544444333444443


Q ss_pred             H---HHHHHHHHHHHHHHHHHc
Q 013019          408 L---RVQQQNSTALRMAEILEA  426 (451)
Q Consensus       408 ~---Rl~~~~~nA~~Lae~L~~  426 (451)
                      .   -.++..+.+.+|++.|++
T Consensus       320 ~~~~~y~~l~~~~~~L~~gl~~  341 (432)
T COG0001         320 TEEGVYERLDALGERLAEGLRA  341 (432)
T ss_pred             hcccHHHHHHHHHHHHHHHHHH
Confidence            3   245556667777776654

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.21  E-value=2.2e-09  Score=109.85  Aligned_cols=160  Identities=24%  Similarity=0.369  Sum_probs=126.6

Q ss_pred             HHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc---cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          214 VVEEKMSALEGA--ESTVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       214 ~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all---~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      +++..+++|.|-  .++-++-.|+++-.+++++..   ++.++++++..+|+.+...++..++.+|+++..++..|.+++
T Consensus       124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l  203 (450)
T COG0403         124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDL  203 (450)
T ss_pred             HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhh
Confidence            357888999985  456667777766566655543   235789999999999999999889999999999998899999


Q ss_pred             HHhhcCCCeEEEEEeCCCCCcc-ccccHHHHHHHHHhcCCEEEEecC-CCCCCccccccCCCcEEEECCccc-----CCc
Q 013019          289 EAALNNNNVSLFFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATKF-----IGG  361 (451)
Q Consensus       289 e~ai~~~~tklV~lesPsNPtG-~v~DL~~IaelA~~~g~~lVVD~t-fa~~~~~~pl~~GaDiVv~S~SK~-----l~G  361 (451)
                      +++ .+..+..|+++.|+ -+| ...|+++|.+.+|++|+++++=.- .+-.+...|.++|+||++.+..-+     |||
T Consensus       204 ~~~-~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGG  281 (450)
T COG0403         204 ESA-DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGG  281 (450)
T ss_pred             hhc-cccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCC
Confidence            998 54458999999998 567 667899999999999988776432 334567788999999999997763     666


Q ss_pred             cccceeEEEEeCHHHHH
Q 013019          362 HNDVLAGSISGSGKLVT  378 (451)
Q Consensus       362 ~gdv~gG~Iv~~~eli~  378 (451)
                      +.   +|+.+.++++..
T Consensus       282 Ph---ag~fA~~~~~~R  295 (450)
T COG0403         282 PH---AGYFAVKDEFKR  295 (450)
T ss_pred             cc---eeeeeEhHhHhh
Confidence            65   888888877643

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.21  E-value=3.5e-09  Score=111.05  Aligned_cols=231  Identities=14%  Similarity=0.098  Sum_probs=137.4

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHcc-C-CCeEEEcCCCCcch-HHHHHHhh----hcC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP-A-GGHIVTTTDCYRKT-RIFIETVL----PKM  273 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~-~-GD~VIv~~~~Y~~t-~~~l~~~l----~~~  273 (451)
                      +..+.++...+|.++|.++...   +...+++||++|+..++..... . ..+|+.....|.+. ...+...-    ...
T Consensus        70 ~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~  149 (420)
T TIGR00700        70 FMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKS  149 (420)
T ss_pred             ccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCccccc
Confidence            3345677788899999988742   5678889999999998874321 2 34677777777663 22221100    011


Q ss_pred             Cc-----EEEEeCCC----------------CHHHHHHhhc----CCCeEEEEEeCCCCCcccccc----HHHHHHHHHh
Q 013019          274 GI-----TATVIDPA----------------DMEGLEAALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (451)
Q Consensus       274 Gi-----~v~~vd~~----------------D~d~Le~ai~----~~~tklV~lesPsNPtG~v~D----L~~IaelA~~  324 (451)
                      +.     .+..++..                +++.+++.+.    ++++.+|++|....-+|...+    +++|.++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~  229 (420)
T TIGR00700       150 GFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCRE  229 (420)
T ss_pred             CCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence            11     11112110                1456666652    235899999987776776654    8999999999


Q ss_pred             cCCEEEEecCCCCC-Ccc-----ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHH
Q 013019          325 KGAIVCIDGTFATP-LNQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL  398 (451)
Q Consensus       325 ~g~~lVVD~tfa~~-~~~-----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l  398 (451)
                      ||+++|+||++... ...     .....-.|+++  ++|.+++ | ...|++++++++++.+...........++..+..
T Consensus       230 ~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aa  305 (420)
T TIGR00700       230 HGIVFIADEVQTGFARTGAMFACEHEGPEPDLIT--TAKSLAD-G-LPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAA  305 (420)
T ss_pred             cCCEEEEEecccCCcccchhHHHhhcCCCCCEEE--eeccccC-C-cceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHH
Confidence            99999999997532 111     11222357654  8999984 4 5788999999988877533222222345666665


Q ss_pred             HHHhhHHHH-----HHHHHHHHH-HHHHHHHHHcCCCeEEEecCCC
Q 013019          399 IIRGMKTLH-----LRVQQQNST-ALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       399 ~lrgL~tl~-----~Rl~~~~~n-A~~Lae~L~~~p~V~~V~yPgL  438 (451)
                      ++..|+.+.     .++++..+. ...|.+....+|.+..|...|+
T Consensus       306 a~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~  351 (420)
T TIGR00700       306 ALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGA  351 (420)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeeccce
Confidence            544444332     223222222 2233333345677767655543

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.20  E-value=1.4e-09  Score=115.56  Aligned_cols=228  Identities=14%  Similarity=0.142  Sum_probs=141.6

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc----CC-CeEEEcCCCCcch-HHHHHHh----h----
Q 013019          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP----AG-GHIVTTTDCYRKT-RIFIETV----L----  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~----~G-D~VIv~~~~Y~~t-~~~l~~~----l----  270 (451)
                      +.+|...+|.++|+++...  +.+.+++||++|+..++.....    .| .+||.....|.+. ...+...    .    
T Consensus       121 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~  200 (459)
T PRK11522        121 LLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPF  200 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCC
Confidence            3578888899999998643  5677788999999998875431    12 3588877777663 2222110    0    


Q ss_pred             hcCCcEEEEeCCCCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCC----
Q 013019          271 PKMGITATVIDPADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----  337 (451)
Q Consensus       271 ~~~Gi~v~~vd~~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~----  337 (451)
                      ....-.+..++..|.++++++++.     .++.+|++|......|.+.+    +++|.++|++||+++|+||++..    
T Consensus       201 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRt  280 (459)
T PRK11522        201 MPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRT  280 (459)
T ss_pred             CCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCcc
Confidence            000112344556688888887752     34789999988877787776    99999999999999999999632    


Q ss_pred             C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc--cHHHHHHHHHhhHHHHH--HHH
Q 013019          338 P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHL--RVQ  411 (451)
Q Consensus       338 ~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l--s~~~a~l~lrgL~tl~~--Rl~  411 (451)
                      +  +..+-...-.||+  +++|.+++.- +..|.+++++++.+.+.......+.+.  +|..+..++..|+.+..  .++
T Consensus       281 G~~~a~e~~gv~PDiv--t~gK~lggG~-~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~  357 (459)
T PRK11522        281 GKMFACEHENVQPDIL--CLAKALGGGV-MPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPA  357 (459)
T ss_pred             chhhhhhccCCCCCEE--EechhhhCCC-ccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHH
Confidence            1  1111112235777  5799998631 125666777777775532111223333  67766666655655532  234


Q ss_pred             HHHHHHHHHHHHHH----cCC-CeEEEecCC
Q 013019          412 QQNSTALRMAEILE----AHP-KVLLLFITL  437 (451)
Q Consensus       412 ~~~~nA~~Lae~L~----~~p-~V~~V~yPg  437 (451)
                      +..+....+.+.|+    ++| .|..|+..|
T Consensus       358 ~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~G  388 (459)
T PRK11522        358 QAEQKGDYLLDGFRQLAREYPDLVQEARGKG  388 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeEEece
Confidence            44455555555554    356 456665444

>PRK07046 aminotransferase; Validated

Probab=99.20  E-value=3.4e-09  Score=112.36  Aligned_cols=225  Identities=19%  Similarity=0.204  Sum_probs=145.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHH-HHHHhh-----h---cCCc
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRI-FIETVL-----P---KMGI  275 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~-~l~~~l-----~---~~Gi  275 (451)
                      ..++...+|.++|.++.+.+...+++||++|+..++.....  ..++|+.....|.+... .+....     .   ..|+
T Consensus       112 ~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~  191 (453)
T PRK07046        112 LPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQ  191 (453)
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCC
Confidence            45777788999999988878888999999999998875421  24678888888877432 111100     0   0121


Q ss_pred             ------EEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCC----CCCcc
Q 013019          276 ------TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFA----TPLNQ  341 (451)
Q Consensus       276 ------~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa----~~~~~  341 (451)
                            .+..++..|++++++.+...++.+|++|......|.+.+    +++|.++|+++|+++|+||+..    .+-.+
T Consensus       192 ~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~  271 (453)
T PRK07046        192 VHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT  271 (453)
T ss_pred             CccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh
Confidence                  233455678999999996556899999977655565543    8999999999999999999863    22222


Q ss_pred             ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh------H-hhCC--CccHHHHHHHHHhhHHHHH--HH
Q 013019          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH------H-VLGG--ALNPNAAYLIIRGMKTLHL--RV  410 (451)
Q Consensus       342 ~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~------~-~~G~--~ls~~~a~l~lrgL~tl~~--Rl  410 (451)
                      .-...-.||++  +.|.++|.  ...|++++++++++.+....      . ..+.  ..+|..+...+..|+.+..  ..
T Consensus       272 ~~~gv~PDi~t--~gK~lggG--~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~  347 (453)
T PRK07046        272 RAHGLEPDFLV--VGKPIAGG--VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAY  347 (453)
T ss_pred             HHhCCCcccee--ehhhhcCC--CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHH
Confidence            22223358876  79999974  45788899999888775321      0 1122  2366666655555554422  13


Q ss_pred             HHHHHHHHHHHHHHH----cCCCeEEEec
Q 013019          411 QQQNSTALRMAEILE----AHPKVLLLFI  435 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~----~~p~V~~V~y  435 (451)
                      ++..+..+.|.+.|+    +++.+..|..
T Consensus       348 ~~~~~~g~~l~~~L~~l~~~~~~~~~v~g  376 (453)
T PRK07046        348 AHMLALAARLAAGLRAVIARHGLPWHVTR  376 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence            444445555555554    4554444443

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.20  E-value=1.6e-09  Score=113.79  Aligned_cols=198  Identities=15%  Similarity=0.139  Sum_probs=124.8

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHcc-CC-CeEEEcCCCCcch-HHHHHHhh----hcC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP-AG-GHIVTTTDCYRKT-RIFIETVL----PKM  273 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~-~G-D~VIv~~~~Y~~t-~~~l~~~l----~~~  273 (451)
                      +..+.++...+|.++|+++...   +..++++||++|+..++..... .| .+|+.....|.+. ...+...-    .+.
T Consensus        77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~  156 (421)
T PRK09792         77 YQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKI  156 (421)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCccccc
Confidence            3345678888899999988642   5678889999999998875432 23 4688888777663 22221100    011


Q ss_pred             Cc-----EEEEeCC----------CCHHHHHHhhc----CCCeEEEEEeCCCCCccccc-c---HHHHHHHHHhcCCEEE
Q 013019          274 GI-----TATVIDP----------ADMEGLEAALN----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVC  330 (451)
Q Consensus       274 Gi-----~v~~vd~----------~D~d~Le~ai~----~~~tklV~lesPsNPtG~v~-D---L~~IaelA~~~g~~lV  330 (451)
                      +.     .+..++.          .+++.+++.++    .+++++|++|...+++|... +   +++|.++|++||+++|
T Consensus       157 ~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI  236 (421)
T PRK09792        157 GFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI  236 (421)
T ss_pred             CCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            11     1222222          13477888775    23589999998889998654 5   8999999999999999


Q ss_pred             EecCCCCC-Ccc-----ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH
Q 013019          331 IDGTFATP-LNQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (451)
Q Consensus       331 VD~tfa~~-~~~-----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~  404 (451)
                      +||++... ...     ..+....|+  .+++|.+++.  ...|++++++++++.+...........+|..+..++..++
T Consensus       237 ~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~~G--~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~  312 (421)
T PRK09792        237 ADEVQSGFARTGKLFAMDHYADKPDL--MTMAKSLAGG--MPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLN  312 (421)
T ss_pred             EeccccCCCCCCchhHHHhcCCCCcE--EEeehhhcCC--CceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHH
Confidence            99986432 111     111123564  5689999853  4688899999888776532221122345655554333333


Q ss_pred             H
Q 013019          405 T  405 (451)
Q Consensus       405 t  405 (451)
                      .
T Consensus       313 ~  313 (421)
T PRK09792        313 I  313 (421)
T ss_pred             H
Confidence            3

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.18  E-value=8.5e-10  Score=113.55  Aligned_cols=204  Identities=11%  Similarity=0.042  Sum_probs=136.7

Q ss_pred             hhHHHHHHHHHhhhCC-C--cEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          210 PTTVVVEEKMSALEGA-E--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga-e--~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      ...+..++.|+++++. +  +++++ +||+.|+.+++..++.+||++++......+.+  +...++++|.. ..+..   
T Consensus        48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r--~~~~a~~~g~~-~~~~~~~~  124 (360)
T PRK05355         48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKK--AIKEAKKYGEV-NVAASSED  124 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCc-eEEecccc
Confidence            4567789999999995 2  34444 67889999999999999998777654444432  23566777765 33321   


Q ss_pred             ---CCHHHHHH-hhcCCCeEEEEEeCCCCCccccc-cHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCc
Q 013019          283 ---ADMEGLEA-ALNNNNVSLFFTESPTNPFLRCV-DVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 ---~D~d~Le~-ai~~~~tklV~lesPsNPtG~v~-DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~S  356 (451)
                         .+..++++ ++++ ++++|.+..-.+.||... |+++|      +|++++||.+.+.+. ..+.-++  |+++.|.+
T Consensus       125 ~g~~~~~~~~~~~l~~-~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssq  195 (360)
T PRK05355        125 DGFTYIPPLDEWQLSD-DAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQ  195 (360)
T ss_pred             cCCCCCCChhhccCCC-CCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEecc
Confidence               12234444 6766 489999877778899997 77766      899999999965442 1222233  69999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHH-h----------H-hhCCCccHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNL-H----------H-VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~-~----------~-~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA~  418 (451)
                      |.++.+|   .|+++.++++++++... .          . ....+++-...+.+..+|+.      ++.+.+++.+.++
T Consensus       196 K~lgP~G---lg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~  272 (360)
T PRK05355        196 KNIGPAG---LTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAA  272 (360)
T ss_pred             ccccCCc---eEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9998766   89999999888775431 1          0 01122333333333333332      4456677788889


Q ss_pred             HHHHHHHcCC
Q 013019          419 RMAEILEAHP  428 (451)
Q Consensus       419 ~Lae~L~~~p  428 (451)
                      .+.++|++.+
T Consensus       273 ~l~~~l~~~~  282 (360)
T PRK05355        273 LLYDAIDSSD  282 (360)
T ss_pred             HHHHHHHhCC
Confidence            9999999877

>PRK06105 aminotransferase; Provisional

Probab=99.16  E-value=7.7e-09  Score=109.88  Aligned_cols=232  Identities=13%  Similarity=0.120  Sum_probs=142.5

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchH-HHHHH----
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTR-IFIET----  268 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~-~~l~~----  268 (451)
                      ++++.++...+|.++|+++...  +.+.+++||++|+.+++.....       +| .+||.....|.+.. ..+..    
T Consensus        86 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~  165 (460)
T PRK06105         86 FSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLP  165 (460)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCc
Confidence            3456678888899999998753  5677789999999998876421       22 46777777776632 21100    


Q ss_pred             -hhhcCCc---EEEEeCCC------------------CHHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHH
Q 013019          269 -VLPKMGI---TATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVS  319 (451)
Q Consensus       269 -~l~~~Gi---~v~~vd~~------------------D~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~Ia  319 (451)
                       ..+.++.   .+..++..                  ..+++++.+.   .+++.+|++|......|.+.+    +++|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr  245 (460)
T PRK06105        166 NNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQ  245 (460)
T ss_pred             ccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHH
Confidence             0001111   12222211                  1356677663   235899999987766676665    89999


Q ss_pred             HHHHhcCCEEEEecCCC-CCC-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-------Hh
Q 013019          320 DLCHKKGAIVCIDGTFA-TPL-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HV  386 (451)
Q Consensus       320 elA~~~g~~lVVD~tfa-~~~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-------~~  386 (451)
                      ++|++||+++|+||++. .+.     ..+-...-.||++  ++|.++|.. +.+|++++++++.+.+....       ..
T Consensus       246 ~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~--~gK~lggG~-~P~~av~~~~~i~~~~~~~~~~~~~~~h~  322 (460)
T PRK06105        246 AVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILV--MSKQLSSSY-QPLSAVLMNEKVYDPIADESGKIGTFGHG  322 (460)
T ss_pred             HHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeee--eecccccCc-ccceEEEEcHHHHHHHhcccccCcccccC
Confidence            99999999999999962 211     1121222357775  799998742 24788888988887765321       11


Q ss_pred             hCCCccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH---HcCCCeEEEecCCC
Q 013019          387 LGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEIL---EAHPKVLLLFITLL  438 (451)
Q Consensus       387 ~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L---~~~p~V~~V~yPgL  438 (451)
                      .....+|..+..++..|+.+..  .+++..+....|.+.|   +++|.|..|+.-|+
T Consensus       323 ~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl  379 (460)
T PRK06105        323 FTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGL  379 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecce
Confidence            1223567777766666666543  2444444555554444   45676777765444

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.16  E-value=4.5e-09  Score=110.58  Aligned_cols=231  Identities=12%  Similarity=0.079  Sum_probs=137.6

Q ss_pred             CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchH-HHHHH------hhhcC
Q 013019          206 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTR-IFIET------VLPKM  273 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~-~~l~~------~l~~~  273 (451)
                      .+.++...+|.++|.++.+.   +.+.+++||++|+..++....  ....+|+.....|.+.. ..+..      .-..+
T Consensus        79 ~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~  158 (425)
T PRK07495         79 VVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGF  158 (425)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCC
Confidence            46678888899999998753   467778999999999887442  22356888777776632 21110      00001


Q ss_pred             C---cEEEEeCCCC----------HHHHHHhhc----CCCeEEEEEeCCCCCcccc-cc---HHHHHHHHHhcCCEEEEe
Q 013019          274 G---ITATVIDPAD----------MEGLEAALN----NNNVSLFFTESPTNPFLRC-VD---VKLVSDLCHKKGAIVCID  332 (451)
Q Consensus       274 G---i~v~~vd~~D----------~d~Le~ai~----~~~tklV~lesPsNPtG~v-~D---L~~IaelA~~~g~~lVVD  332 (451)
                      +   ..+.+++..+          ++++++.++    .+++.+|++|....-+|.. .+   +++|.++|++||+++|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~D  238 (425)
T PRK07495        159 GAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIAD  238 (425)
T ss_pred             CCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            1   1223333221          455676653    2358999998766556633 22   889999999999999999


Q ss_pred             cCCCCC-Ccccc---ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH
Q 013019          333 GTFATP-LNQKA---LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL  408 (451)
Q Consensus       333 ~tfa~~-~~~~p---l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~  408 (451)
                      |++... .....   ...|...-+.+++|.+++.  ..+|++++++++++.+...........+|..+..++..++.+..
T Consensus       239 Ev~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G--~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~  316 (425)
T PRK07495        239 EVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG--FPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE  316 (425)
T ss_pred             chhhcCCcCCCceeecccCCCCCEEeehhhhcCC--ccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh
Confidence            996421 11111   1123333346689999853  46889999998887765322222223466666655555554432


Q ss_pred             --HHHHHHHHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          409 --RVQQQNSTALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       409 --Rl~~~~~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                        ..++..+...++.+.|    +++|.+..|+.+||
T Consensus       317 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl  352 (425)
T PRK07495        317 EDLCERANQLGNRLKQRLASLRETVPEIADIRGPGF  352 (425)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCce
Confidence              1233333333443333    34677777776664

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.15  E-value=2.8e-09  Score=109.02  Aligned_cols=154  Identities=21%  Similarity=0.292  Sum_probs=113.2

Q ss_pred             CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----CCHHHHHHhhcCC-----
Q 013019          226 ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNN-----  295 (451)
Q Consensus       226 e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----~D~d~Le~ai~~~-----  295 (451)
                      +.-++.++|. .++..+++.+++.||+|++....|.+...    .++.+|+.+..|+.    .++|.|++.+...     
T Consensus       124 ~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~----s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~  199 (472)
T KOG0634|consen  124 NWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQ----SMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSY  199 (472)
T ss_pred             CceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHH----hccccCceEEeccccCCCCCHHHHHHHHhcCCcccc
Confidence            3456666666 89999999999999999999999988663    34567877776654    3688888877532     


Q ss_pred             ---CeEEEEE-eCCCCCccccccH---HHHHHHHHhcCCEEEEecCCCCC----Cc------c--------------ccc
Q 013019          296 ---NVSLFFT-ESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATP----LN------Q--------------KAL  344 (451)
Q Consensus       296 ---~tklV~l-esPsNPtG~v~DL---~~IaelA~~~g~~lVVD~tfa~~----~~------~--------------~pl  344 (451)
                         +++++|. -+-+||||....+   ++|.+||++|++++|.|+.|.-.    +.      .              ..+
T Consensus       200 k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sfl  279 (472)
T KOG0634|consen  200 KKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFL  279 (472)
T ss_pred             cCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcc
Confidence               2455554 4446999998875   68999999999999999985310    00      0              011


Q ss_pred             c---CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH
Q 013019          345 S---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH  385 (451)
Q Consensus       345 ~---~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~  385 (451)
                      .   .|..|-..||||.++..  ++.||+.+++.+++++.....
T Consensus       280 slDtdGrVIr~dSFSKiiaPG--lRlG~it~~~~~l~ril~~ae  321 (472)
T KOG0634|consen  280 SLDTDGRVIRNDSFSKIIAPG--LRLGWITGNSLFLKRILDLAE  321 (472)
T ss_pred             cccccccEEeccchhhhhcCc--ceeEEeecCHHHHHHHhhhcc
Confidence            1   14457788999999854  589999999988888765443

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.14  E-value=6.3e-09  Score=110.09  Aligned_cols=228  Identities=12%  Similarity=0.149  Sum_probs=139.1

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcch-HHHHH--------
Q 013019          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKT-RIFIE--------  267 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t-~~~l~--------  267 (451)
                      +.++...+|.++|+++..  .+.+.+++||++|+..++.....       + ..+||.....|.+. ...+.        
T Consensus        89 ~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~  168 (445)
T PRK09221         89 MGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNR  168 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhh
Confidence            467888889999999874  36788889999999998875431       1 24688888887663 21110        


Q ss_pred             HhhhcCCcEEEEeCCC------------------CHHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHHHHHH
Q 013019          268 TVLPKMGITATVIDPA------------------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLC  322 (451)
Q Consensus       268 ~~l~~~Gi~v~~vd~~------------------D~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~IaelA  322 (451)
                      ..+......+..++..                  ..+++++.++.   +++.+|++|......|.+.+    +++|.++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc  248 (445)
T PRK09221        169 KMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREIC  248 (445)
T ss_pred             hccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHH
Confidence            0001010112222211                  13566776641   35889999988877888777    99999999


Q ss_pred             HhcCCEEEEecCCCC-C-----CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH-------hHhhCC
Q 013019          323 HKKGAIVCIDGTFAT-P-----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGG  389 (451)
Q Consensus       323 ~~~g~~lVVD~tfa~-~-----~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-------~~~~G~  389 (451)
                      +++|+++|+||++.. +     +..+-...-.|+++  ++|.+++.. ...|.+++++++++.+...       ......
T Consensus       249 ~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~--~gK~l~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  325 (445)
T PRK09221        249 DKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIIT--FAKGLTNGA-IPMGAVIASDEIYDAFMQGPEYAIEFFHGYTY  325 (445)
T ss_pred             HHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEE--eccccccCc-ccceeeEEcHHHHHhhccCcccccccccccCC
Confidence            999999999999632 1     11111122247765  789997542 2256678888888776421       111112


Q ss_pred             CccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEecCC
Q 013019          390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEA---HPKVLLLFITL  437 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~~---~p~V~~V~yPg  437 (451)
                      ..+|..+..++..|+.+..  .+++..+..+.+.+.|++   +|.|..|+.-|
T Consensus       326 ~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~G  378 (445)
T PRK09221        326 SAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIG  378 (445)
T ss_pred             CcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCc
Confidence            2466666665555655532  245555666666666654   46566665444

>PRK06541 hypothetical protein; Provisional

Probab=99.14  E-value=7.2e-09  Score=110.10  Aligned_cols=228  Identities=14%  Similarity=0.147  Sum_probs=140.8

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc----C----CCeEEEcCCCCcch-HHHHHHh----h
Q 013019          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP----A----GGHIVTTTDCYRKT-RIFIETV----L  270 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~----~----GD~VIv~~~~Y~~t-~~~l~~~----l  270 (451)
                      .+.++...+|.++|+++...  +.+.+++||++|+..++.....    .    ..+||.....|.+. ...+...    .
T Consensus        91 ~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~  170 (460)
T PRK06541         91 SYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAF  170 (460)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhh
Confidence            35678888899999998643  5778889999999998874432    1    35788888777663 2222100    0


Q ss_pred             -hcCC---cEEEEeCC----------CC--------HHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHH
Q 013019          271 -PKMG---ITATVIDP----------AD--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (451)
Q Consensus       271 -~~~G---i~v~~vd~----------~D--------~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~Iael  321 (451)
                       ..++   ..+..++.          .+        ++.+++.++   +.++.+|++|...++.|.+.+    +++|.++
T Consensus       171 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~l  250 (460)
T PRK06541        171 KAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREI  250 (460)
T ss_pred             ccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHH
Confidence             0000   01111211          11        256777774   235788999887888998877    9999999


Q ss_pred             HHhcCCEEEEecCCC-CCCc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--hh--CCCc
Q 013019          322 CHKKGAIVCIDGTFA-TPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VL--GGAL  391 (451)
Q Consensus       322 A~~~g~~lVVD~tfa-~~~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~--G~~l  391 (451)
                      |+++|+++|+||++. .+..     ..-...-.|+++  ++|.+++. ....|++++++++++.+.....  ..  ....
T Consensus       251 c~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~~G-~~pigav~~~~~i~~~~~~~~~~~~~~~T~~g  327 (460)
T PRK06541        251 CDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGITSG-YSPLGAMIASDRLFEPFLDGPTMFLHGYTFGG  327 (460)
T ss_pred             HHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--ecccccCC-ccceeEEEEcHHHHHHhhcCCCccccCCCCCC
Confidence            999999999999962 2211     111222358775  89999853 2236777888888877653211  11  1234


Q ss_pred             cHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEecC
Q 013019          392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEA---HPKVLLLFIT  436 (451)
Q Consensus       392 s~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~~---~p~V~~V~yP  436 (451)
                      +|..+..++..|+.+..  ..++..+....+.+.|++   +|.|..|+..
T Consensus       328 np~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~  377 (460)
T PRK06541        328 HPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGD  377 (460)
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            66776666666665432  235555666666666644   4555555433

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.13  E-value=1e-08  Score=108.48  Aligned_cols=229  Identities=12%  Similarity=0.138  Sum_probs=138.7

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcch-HHHHH--------
Q 013019          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKT-RIFIE--------  267 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t-~~~l~--------  267 (451)
                      +.+|...+|.++|+++..  .+.+.+++||++|+..++.....       + ..+||.....|.+. ...+.        
T Consensus        86 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~  165 (442)
T PRK13360         86 MGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNR  165 (442)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhh
Confidence            357888889999999874  36778889999999998874331       1 25788888887763 21110        


Q ss_pred             HhhhcCCcEEEEeCCC------------------CHHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHHH
Q 013019          268 TVLPKMGITATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLC  322 (451)
Q Consensus       268 ~~l~~~Gi~v~~vd~~------------------D~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~IaelA  322 (451)
                      .........+.+++..                  ..++|++++.   .+++.+|++|......|.+.+    +++|.++|
T Consensus       166 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc  245 (442)
T PRK13360        166 KAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREIC  245 (442)
T ss_pred             hccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            0001000112222211                  1457777774   235889999988877788877    99999999


Q ss_pred             HhcCCEEEEecCCC-CCC-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH-------hHhhCC
Q 013019          323 HKKGAIVCIDGTFA-TPL-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLGG  389 (451)
Q Consensus       323 ~~~g~~lVVD~tfa-~~~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-------~~~~G~  389 (451)
                      +++|+++|+||++. .+.     ...-...-.|++  +++|.+++.. +..|.+++++++.+.+...       ......
T Consensus       246 ~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv--t~gK~l~gG~-~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~  322 (442)
T PRK13360        246 DKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLL--TCAKGLTNGA-IPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTY  322 (442)
T ss_pred             HHcCCEEEEechhhCCCCCccchhhhhcCCCCcee--eeeeccccCc-cceEEEEEcHHHHHHhhcCCccccccccCCCC
Confidence            99999999999962 211     112122235776  5799998631 2356677888887766431       111112


Q ss_pred             CccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCeEEEecCCC
Q 013019          390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILE---AHPKVLLLFITLL  438 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~---~~p~V~~V~yPgL  438 (451)
                      ..+|..+..++..|+.+..  .+++..+....+.+.|+   ++|.|..|+.-||
T Consensus       323 ~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl  376 (442)
T PRK13360        323 SGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGL  376 (442)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccce
Confidence            2466666666555655432  23444455555555554   4566666654443

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.13  E-value=1.2e-08  Score=107.91  Aligned_cols=226  Identities=15%  Similarity=0.132  Sum_probs=133.4

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhh-----cCCc-
Q 013019          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP-----KMGI-  275 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~-----~~Gi-  275 (451)
                      +.++...+|.++|+++.+.   +..++++||++|+..++....  ...++||..+..|.+.....-.+-.     ..+. 
T Consensus        96 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~  175 (443)
T PRK06058         96 TPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFG  175 (443)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccC
Confidence            4567778899999988752   467888999999999887321  2246888888888774322111000     0010 


Q ss_pred             ----EEEEeC---C-CC---------------HHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCE
Q 013019          276 ----TATVID---P-AD---------------MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (451)
Q Consensus       276 ----~v~~vd---~-~D---------------~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~  328 (451)
                          .+..++   . .+               ++.+++.+..+++.+|++|....-.|.+.+    +++|.++|++||++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gil  255 (443)
T PRK06058        176 PFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVV  255 (443)
T ss_pred             CCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence                111111   0 11               233444444345899998854433344432    89999999999999


Q ss_pred             EEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh
Q 013019          329 VCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  402 (451)
Q Consensus       329 lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg  402 (451)
                      +|+||++... ..     ..-...-.|+++.  +|.+++ | ...|++++++++++.+...........+|..+..++..
T Consensus       256 lI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~--gK~l~~-G-~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~  331 (443)
T PRK06058        256 FIADEVQTGFARTGAWFACEHEGIVPDLITT--AKGIAG-G-LPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAA  331 (443)
T ss_pred             EEEeccccCCCcChhhhHHHhcCCCCCEEEE--cccccC-C-CccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHH
Confidence            9999996422 11     1111223488874  799985 3 46788889988887765332212223467776666666


Q ss_pred             hHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEecC
Q 013019          403 MKTLHL--RVQQQNSTALRMAEILE----AHPKVLLLFIT  436 (451)
Q Consensus       403 L~tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~~V~yP  436 (451)
                      |+.+..  -.++..+....+.+.|+    +++.|..|+.-
T Consensus       332 L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~  371 (443)
T PRK06058        332 IETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGR  371 (443)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeecc
Confidence            665532  12333344445555553    35766666543

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.13  E-value=3e-09  Score=110.95  Aligned_cols=208  Identities=19%  Similarity=0.228  Sum_probs=130.9

Q ss_pred             HHHHHHHHhhhCCCcE--EEeCCHHH---HHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          213 VVVEEKMSALEGAEST--VIMASGMS---ASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       213 ~~Lee~LA~l~gae~~--vv~sSG~a---Ai~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      -+++..|+++.|-+-+  -+...+++   |+..+++.--+.+++|+++...|+.+...++..+...|+++..++..+...
T Consensus       113 fe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~  192 (429)
T PF02347_consen  113 FEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGT  192 (429)
T ss_dssp             HHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCS
T ss_pred             HHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCC
Confidence            4578999999997642  34444553   333333333334569999999999999888888888899998877432111


Q ss_pred             HHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecC--CCCCCccccccCCCcEEEECCcccCCcc---
Q 013019          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT--FATPLNQKALSLGADLVLHSATKFIGGH---  362 (451)
Q Consensus       288 Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~t--fa~~~~~~pl~~GaDiVv~S~SK~l~G~---  362 (451)
                      ..   ++ ++.+|++++|+ -.|.+.|+++|.+++|++|+++++ .+  -+-.....|.++|+||++.+ +|.||.+   
T Consensus       193 ~d---~~-~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~  265 (429)
T PF02347_consen  193 TD---DD-DTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGF  265 (429)
T ss_dssp             B----ST-TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CC
T ss_pred             cc---cc-CeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCC
Confidence            11   34 59999999998 589999999999999999999887 54  23345678899999999887 7766622   


Q ss_pred             ccceeEEEEeCHHHHHHHHHH----------------------------hHh--hCCC--ccH--HHHHHHHHhhHHHHH
Q 013019          363 NDVLAGSISGSGKLVTQIRNL----------------------------HHV--LGGA--LNP--NAAYLIIRGMKTLHL  408 (451)
Q Consensus       363 gdv~gG~Iv~~~eli~~lr~~----------------------------~~~--~G~~--ls~--~~a~l~lrgL~tl~~  408 (451)
                      |.--.|++.++++++.++-..                            +..  .+..  +-.  ...|+.+.|-+.|..
T Consensus       266 GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~  345 (429)
T PF02347_consen  266 GGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLRE  345 (429)
T ss_dssp             C-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHH
Confidence            112378988887765543210                            000  1111  111  124566666677776


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q 013019          409 RVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~  427 (451)
                      --++...+|..+++.|++.
T Consensus       346 iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  346 IAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             HHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            6778889999999999987

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.12  E-value=1.5e-08  Score=106.58  Aligned_cols=228  Identities=18%  Similarity=0.239  Sum_probs=145.0

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHcc-C-CCeEEEcCCCCcchH-HHHHHhh-h--------cC
Q 013019          207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP-A-GGHIVTTTDCYRKTR-IFIETVL-P--------KM  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g-ae~~vv~sSG~aAi~~al~all~-~-GD~VIv~~~~Y~~t~-~~l~~~l-~--------~~  273 (451)
                      +.++...+|.++|.++.. .+.+.+++||++|+..++..... . ..+||.....|.+.. ..+...- .        ..
T Consensus        90 ~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~  169 (428)
T PRK12389         90 TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSA  169 (428)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCC
Confidence            567778888889888764 46778889999999998875432 2 356887777776632 2221100 0        01


Q ss_pred             Cc------EEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC---
Q 013019          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  338 (451)
Q Consensus       274 Gi------~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~---  338 (451)
                      ++      .+..++..|++.+++.+++  +++.+|++|...+..|.+.+    +++|.++|+++|+++|+||++...   
T Consensus       170 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~  249 (428)
T PRK12389        170 GVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFM  249 (428)
T ss_pred             CCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccC
Confidence            11      2334456688999888852  24889999988777787776    999999999999999999985432   


Q ss_pred             Cc--cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-HhhC--CCccHHHHHHHHHhhHHHHH--HHH
Q 013019          339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLG--GALNPNAAYLIIRGMKTLHL--RVQ  411 (451)
Q Consensus       339 ~~--~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-~~~G--~~ls~~~a~l~lrgL~tl~~--Rl~  411 (451)
                      ..  +.-...-.|++  +++|.++|.  ...|.+++++++++.+.... ...+  ...+|..+..++..|+.+..  .++
T Consensus       250 ~~~a~~~~gv~PDiv--t~gK~lggG--~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~  325 (428)
T PRK12389        250 YGGAQDLLGVEPDLT--ALGKIIGGG--LPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYE  325 (428)
T ss_pred             cchhhHHhCCCCCee--eechhhcCC--CceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHH
Confidence            11  11122235776  479999864  34666788888888774211 1112  23467776666666665532  244


Q ss_pred             HHHHHHHHHHHHHHc----CCCeEEE-ecCCC
Q 013019          412 QQNSTALRMAEILEA----HPKVLLL-FITLL  438 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~----~p~V~~V-~yPgL  438 (451)
                      +..+..++|.+.|++    +|.+..+ ...|+
T Consensus       326 ~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~  357 (428)
T PRK12389        326 KLDRLGAMLEEGILEAAEKHGITITINRLKGA  357 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEecCcE
Confidence            555556666665553    6654444 44433

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.12  E-value=1.6e-08  Score=108.52  Aligned_cols=228  Identities=13%  Similarity=0.105  Sum_probs=137.4

Q ss_pred             CCchhHHHHHHHHHhhhC-C--CcEEEeCCHHHHHHHHHHHHc------c-CC-CeEEEcCCCCcch-HHHHHHh-----
Q 013019          207 YGNPTTVVVEEKMSALEG-A--ESTVIMASGMSASTVMLLALV------P-AG-GHIVTTTDCYRKT-RIFIETV-----  269 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g-a--e~~vv~sSG~aAi~~al~all------~-~G-D~VIv~~~~Y~~t-~~~l~~~-----  269 (451)
                      +.++...+|.++|.++.. .  +.+++++||++|+..++....      . +| .+||..+..|.+. ...+...     
T Consensus       130 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~  209 (504)
T PLN02760        130 RTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPAL  209 (504)
T ss_pred             cCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhh
Confidence            356777889999988853 2  357778999999999988653      1 22 4677777777663 2222100     


Q ss_pred             hhcCCcE---EEEeCCC----------C--------HHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHH
Q 013019          270 LPKMGIT---ATVIDPA----------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (451)
Q Consensus       270 l~~~Gi~---v~~vd~~----------D--------~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~Iael  321 (451)
                      ...++..   +..++..          +        .++|++.+.   ++++.+|++|......|.+.+    +++|.++
T Consensus       210 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~l  289 (504)
T PLN02760        210 HQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAV  289 (504)
T ss_pred             ccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            0111110   2222211          1        135666663   234889999988777787777    9999999


Q ss_pred             HHhcCCEEEEecCCC-CCCc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH-------hHhhC
Q 013019          322 CHKKGAIVCIDGTFA-TPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HHVLG  388 (451)
Q Consensus       322 A~~~g~~lVVD~tfa-~~~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-------~~~~G  388 (451)
                      |++||+++|+||++. .+..     +.-...-.||++  ++|.+++.. +..|.+++++++++.+...       .....
T Consensus       290 c~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~lggG~-~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T  366 (504)
T PLN02760        290 LKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS--LAKALSSAY-MPIGAVLVSPEISDVIHSQSNKLGSFAHGFT  366 (504)
T ss_pred             HHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE--ecccccCCc-cccceEeecHHHHhhhhcccccccCcccCCC
Confidence            999999999999862 2111     121222357665  799998631 2256678888888877532       11111


Q ss_pred             CCccHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHH---HcCCCeEEEecCC
Q 013019          389 GALNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAEIL---EAHPKVLLLFITL  437 (451)
Q Consensus       389 ~~ls~~~a~l~lrgL~tl~~R--l~~~~~nA~~Lae~L---~~~p~V~~V~yPg  437 (451)
                      ...+|..+..++..|+.+...  +++..+....|.+.|   .++|.|..|+.-|
T Consensus       367 ~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~G  420 (504)
T PLN02760        367 YSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTG  420 (504)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCc
Confidence            223677777666666655432  344445555555544   4467666665443

>PRK07482 hypothetical protein; Provisional

Probab=99.10  E-value=2.7e-08  Score=105.73  Aligned_cols=230  Identities=11%  Similarity=0.050  Sum_probs=137.7

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcchH-HHHHH-----h
Q 013019          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTR-IFIET-----V  269 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t~-~~l~~-----~  269 (451)
                      .+.++...+|.++|+++..  .+.+.+++||++|+..++.....       + ..+||.....|.+.. ..+..     .
T Consensus        90 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~  169 (461)
T PRK07482         90 GHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLF  169 (461)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchh
Confidence            4567888889999999874  36777889999999999875531       1 246888887777632 11100     0


Q ss_pred             hhcCC---cEEEEeCCC------------------CHHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHH
Q 013019          270 LPKMG---ITATVIDPA------------------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (451)
Q Consensus       270 l~~~G---i~v~~vd~~------------------D~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~Iael  321 (451)
                      -..++   -.+..++..                  +++++++.+.   .+++.+|++|....-.|.+.+    +++|.++
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~l  249 (461)
T PRK07482        170 HQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAV  249 (461)
T ss_pred             hhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            00011   011111110                  3567777774   235899999977655555532    7899999


Q ss_pred             HHhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-----HhhC--
Q 013019          322 CHKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLG--  388 (451)
Q Consensus       322 A~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-----~~~G--  388 (451)
                      |++||+++|+||++..    +  +..+-...-.||++  +.|.++|.- ...|.+++++++.+.+....     ...+  
T Consensus       250 c~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T  326 (461)
T PRK07482        250 LKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTSAY-APLSGSIVGEKVWDVLEQGSDEHGAIGHGWT  326 (461)
T ss_pred             HHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--EccccccCc-cccceeeecHHHHHHHhcccccCCccccCCC
Confidence            9999999999998532    1  11222223368888  699998641 12566677888777664210     0112  


Q ss_pred             CCccHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          389 GALNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       389 ~~ls~~~a~l~lrgL~tl~~R--l~~~~~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      ...+|..+..++..|+.+...  +++..+....|.+.|    +++|.|..|+.-|+
T Consensus       327 ~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl  382 (461)
T PRK07482        327 YSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGM  382 (461)
T ss_pred             CCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecee
Confidence            134677666666566554321  233334444444444    46787777765443

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.10  E-value=4.3e-09  Score=118.75  Aligned_cols=158  Identities=21%  Similarity=0.295  Sum_probs=122.8

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc---cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          213 VVVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       213 ~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all---~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      -+++..+++|.|-+  ++-++..++++..+++++..   +++++|++++.+|+.+...++..+...|+++..+|   +++
T Consensus       112 ~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~---~~~  188 (939)
T TIGR00461       112 LNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD---CSD  188 (939)
T ss_pred             HHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---HHH
Confidence            34688999999975  45777777766666666542   23478999999999999888878888999988875   466


Q ss_pred             HHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCC-CCCccccccCCCcEEEECCcccC-----Cc
Q 013019          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFI-----GG  361 (451)
Q Consensus       288 Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa-~~~~~~pl~~GaDiVv~S~SK~l-----~G  361 (451)
                      |++.+  + +.+|++.+|+ -+|.+.|+++|++++|++|++++++.-.. ..+..+|.++|+||++.+..++-     ||
T Consensus       189 l~~~~--~-~~~v~~q~Pn-~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg~p~g~GG  264 (939)
T TIGR00461       189 IKKAV--D-VFGCLLQYPA-TDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFGVPMGYGG  264 (939)
T ss_pred             HhhcC--C-EEEEEEECCC-CCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccCCCCCCCC
Confidence            77666  2 7889998887 58999999999999999999999966543 34567888999999988766653     35


Q ss_pred             cccceeEEEEeCHHHHHHH
Q 013019          362 HNDVLAGSISGSGKLVTQI  380 (451)
Q Consensus       362 ~gdv~gG~Iv~~~eli~~l  380 (451)
                      ++   +|++..++++..++
T Consensus       265 P~---aG~~a~~~~l~r~l  280 (939)
T TIGR00461       265 PH---AAFFAVKDEYNRKM  280 (939)
T ss_pred             Cc---eeeeeecHhhHhhC
Confidence            54   89999888776543

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.10  E-value=1.8e-08  Score=106.06  Aligned_cols=229  Identities=15%  Similarity=0.124  Sum_probs=138.3

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc------C-CCeEEEcCCCCcch-HHHHHH-------
Q 013019          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP------A-GGHIVTTTDCYRKT-RIFIET-------  268 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~------~-GD~VIv~~~~Y~~t-~~~l~~-------  268 (451)
                      .+.++...+|.++|+++.+.  +...+++||++|+..++.....      . ..+||.....|.+. ...+..       
T Consensus        82 ~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~  161 (428)
T PRK07986         82 GITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSM  161 (428)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhh
Confidence            34678888899999998753  5677788999999998875432      2 35788888888762 211110       


Q ss_pred             --hhhcCCcEEEEeC-----------CCCHHHHHHhhcC--CCeEEEEEeCC-CCCccccc----cHHHHHHHHHhcCCE
Q 013019          269 --VLPKMGITATVID-----------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCV----DVKLVSDLCHKKGAI  328 (451)
Q Consensus       269 --~l~~~Gi~v~~vd-----------~~D~d~Le~ai~~--~~tklV~lesP-sNPtG~v~----DL~~IaelA~~~g~~  328 (451)
                        ......-.+.+++           ..|++++++.++.  .++.+|++|.. ..-.|...    -+++|.++|+++|++
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~l  241 (428)
T PRK07986        162 HSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGIL  241 (428)
T ss_pred             hhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence              0000000111221           1256677877752  24789999974 43334322    289999999999999


Q ss_pred             EEEecCCCCCC-------ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-----HhhCCCccHHHH
Q 013019          329 VCIDGTFATPL-------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGALNPNAA  396 (451)
Q Consensus       329 lVVD~tfa~~~-------~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-----~~~G~~ls~~~a  396 (451)
                      +|+||++ +++       ...-...-.||++  ++|.++|. -+.+|.+++++++.+.+....     .......+|..+
T Consensus       242 LI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~gG-~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~  317 (428)
T PRK07986        242 LIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALTGG-TMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLAC  317 (428)
T ss_pred             EEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhhCC-cccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHH
Confidence            9999996 322       1111122347775  89999753 234677778888888775421     111122457776


Q ss_pred             HHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCeEEEecCCC
Q 013019          397 YLIIRGMKTLHL--RVQQQNSTALRMAEILE---AHPKVLLLFITLL  438 (451)
Q Consensus       397 ~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~---~~p~V~~V~yPgL  438 (451)
                      ..++..|+.+..  .+++..+..+++.+.|+   ++|.|..|+.-|+
T Consensus       318 aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl  364 (428)
T PRK07986        318 AVANASLSLLESGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGA  364 (428)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccce
Confidence            666666665542  24555555555655554   4666766665544

>PRK05965 hypothetical protein; Provisional

Probab=99.09  E-value=2.8e-08  Score=105.59  Aligned_cols=229  Identities=17%  Similarity=0.172  Sum_probs=138.5

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcchHHH-HHH-----hh
Q 013019          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIF-IET-----VL  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t~~~-l~~-----~l  270 (451)
                      +.++...+|.++|.++..  .+.+.+++||++|+..++.....       + ..+||.....|.+.... +..     .-
T Consensus        87 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~  166 (459)
T PRK05965         87 FGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFH  166 (459)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhh
Confidence            457777889999998874  35667778999999998875431       2 24688888888773211 110     00


Q ss_pred             hcCCc---EEEEeCC---------CC--------HHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHHHHHHH
Q 013019          271 PKMGI---TATVIDP---------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (451)
Q Consensus       271 ~~~Gi---~v~~vd~---------~D--------~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~IaelA~  323 (451)
                      ..++.   .+..++.         .|        ++++++.+..   +++.+|++|......|.+.+    +++|.++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~  246 (459)
T PRK05965        167 RGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACR  246 (459)
T ss_pred             cccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHH
Confidence            01111   1112211         12        2567777742   35899999987766665542    789999999


Q ss_pred             hcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-----HhhC--CC
Q 013019          324 KKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLG--GA  390 (451)
Q Consensus       324 ~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-----~~~G--~~  390 (451)
                      +||+++|+||++..    +  +..+-...-.||++  +.|.++|. -+..|.+++++++.+.+....     ...+  ..
T Consensus       247 ~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG-~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~  323 (459)
T PRK05965        247 ELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT--VAKGLTSG-YVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYS  323 (459)
T ss_pred             HcCCEEEEechhccCccCchhhhHhhcCCCCCeEE--echhhccC-CcceeEEEEcHHHHHHHhccccccccccccCCCC
Confidence            99999999998532    1  12222223368888  68999864 124677788888887764210     0112  23


Q ss_pred             ccHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHH---cCCCeEEEecCCC
Q 013019          391 LNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAEILE---AHPKVLLLFITLL  438 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~R--l~~~~~nA~~Lae~L~---~~p~V~~V~yPgL  438 (451)
                      .+|..+..++..|+.+...  +++..+....|.+.|+   ++|.|..|+.-|+
T Consensus       324 gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl  376 (459)
T PRK05965        324 AHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGL  376 (459)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhccCCCEEEEeecce
Confidence            4677776666666655331  3333344444444443   4677777766554

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.09  E-value=2.8e-09  Score=104.65  Aligned_cols=179  Identities=17%  Similarity=0.246  Sum_probs=111.9

Q ss_pred             cccCCCchh-----HHHHHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHHc---cCCC--eEEEc-CCCCcchHHHH-
Q 013019          203 EYGRYGNPT-----TVVVEEKMSALEGA---ESTVIMASGM-SASTVMLLALV---PAGG--HIVTT-TDCYRKTRIFI-  266 (451)
Q Consensus       203 ~Y~R~~npt-----~~~Lee~LA~l~ga---e~~vv~sSG~-aAi~~al~all---~~GD--~VIv~-~~~Y~~t~~~l-  266 (451)
                      .-.+|++|.     .++|.+.+.+-+|-   +..+..|+|+ .+.+-++..+-   ..|+  +|+.+ .|.|-+.-... 
T Consensus        66 ~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l  145 (417)
T COG3977          66 ALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGL  145 (417)
T ss_pred             HHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccccccc
Confidence            345565554     44445555555563   6788889998 55555554432   3354  35554 56665532110 


Q ss_pred             -HHhhhcCCcEEEEeC------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCC
Q 013019          267 -ETVLPKMGITATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFA  336 (451)
Q Consensus       267 -~~~l~~~Gi~v~~vd------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa  336 (451)
                       ...+-...-+++..+      ..|.++|.  +.+ .+.+|.+.-|+||||.+.   .+.+|.++|++||+++++|++|+
T Consensus       146 ~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e-~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg  222 (417)
T COG3977         146 EEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGE-STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYG  222 (417)
T ss_pred             CccceeeccCCcccccccceeeccCHHHcc--ccc-ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccC
Confidence             011100111111111      23666664  445 489999999999999997   37788888999999999999999


Q ss_pred             CCCcc------ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh
Q 013019          337 TPLNQ------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV  386 (451)
Q Consensus       337 ~~~~~------~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~  386 (451)
                      .|+..      .++-...-+.+.|+||. |.+| .+.|.+++++++++.+..+...
T Consensus       223 ~PFP~iifsd~~~~w~~NiilC~SLSK~-GLPG-~R~GIiIane~viqaitnmn~i  276 (417)
T COG3977         223 VPFPGIIFSDATPLWNENIILCMSLSKL-GLPG-SRCGIIIANEKVIQAITNMNGI  276 (417)
T ss_pred             CCCCceecccccccCCCCEEEEeehhhc-CCCC-cceeEEEccHHHHHHHHhccce
Confidence            87532      22222234788999996 3344 5899999999999988876543

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.09  E-value=1.5e-08  Score=107.08  Aligned_cols=227  Identities=13%  Similarity=0.061  Sum_probs=132.4

Q ss_pred             CCchhHHHHHHHHHhhhCC----CcEEEe-CCHHHHHHHHHHHHcc-C-CCeEEEcCCCCcchHHHHHHhhh----c--C
Q 013019          207 YGNPTTVVVEEKMSALEGA----ESTVIM-ASGMSASTVMLLALVP-A-GGHIVTTTDCYRKTRIFIETVLP----K--M  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga----e~~vv~-sSG~aAi~~al~all~-~-GD~VIv~~~~Y~~t~~~l~~~l~----~--~  273 (451)
                      +.++...+|.++|.++...    ...+++ +||++|+..++..... . ..+|+.....|.+..........    +  +
T Consensus        79 ~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~  158 (442)
T TIGR00709        79 LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAV  158 (442)
T ss_pred             cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccC
Confidence            5678888899999998753    244454 7999999998875432 2 35688888877774322211110    0  0


Q ss_pred             C---cEEEEeCCCC-------------H----HHHHHhhc-----CCCeEEEEEeCCCCCccccc-c---HHHHHHHHHh
Q 013019          274 G---ITATVIDPAD-------------M----EGLEAALN-----NNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHK  324 (451)
Q Consensus       274 G---i~v~~vd~~D-------------~----d~Le~ai~-----~~~tklV~lesPsNPtG~v~-D---L~~IaelA~~  324 (451)
                      +   ..+.+++..+             .    +.+++.++     ..++.+|++|.+.+..|.+. +   +++|.++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~  238 (442)
T TIGR00709       159 GMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK  238 (442)
T ss_pred             CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            0   1122222111             1    12334442     12488999998877666553 3   8899999999


Q ss_pred             cCCEEEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHH
Q 013019          325 KGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL  398 (451)
Q Consensus       325 ~g~~lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l  398 (451)
                      ||+++|.||++... ..     ..-...-.|+++  ++|.+++ | ...|+++++++ ++.+...........+|..+..
T Consensus       239 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G-~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aa  313 (442)
T TIGR00709       239 HDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-G-LPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVT  313 (442)
T ss_pred             cCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-C-cccEEEEEchH-HhccCCCcCCCCCCcCHHHHHH
Confidence            99999999996421 11     111222358888  7999987 4 56777777777 4433211111112346776666


Q ss_pred             HHHhhHHHHH-H-HHHHHHHHHHHHHHHH----cCCCeEEEecCCC
Q 013019          399 IIRGMKTLHL-R-VQQQNSTALRMAEILE----AHPKVLLLFITLL  438 (451)
Q Consensus       399 ~lrgL~tl~~-R-l~~~~~nA~~Lae~L~----~~p~V~~V~yPgL  438 (451)
                      ++..|+.+.. . .++..+....|.+.|+    ++|.|..|+.-||
T Consensus       314 a~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl  359 (442)
T TIGR00709       314 GTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGL  359 (442)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccce
Confidence            6666665432 1 2333344444444443    5777777776554

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.09  E-value=2e-08  Score=106.73  Aligned_cols=232  Identities=18%  Similarity=0.182  Sum_probs=138.7

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcc-hHHHHHHh-h---h-cC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRK-TRIFIETV-L---P-KM  273 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~-t~~~l~~~-l---~-~~  273 (451)
                      ..++.++...+|.++|+++.+.  +...+.+||++|+..++....  ....+|+.....|.+ +...+... .   . .+
T Consensus       107 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~  186 (459)
T PRK06082        107 PRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGM  186 (459)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCC
Confidence            3467788899999999999853  467777899999998886442  123577777777766 32222110 0   0 00


Q ss_pred             C---cEEEEeC--------CCC--------HHHHHHhhcC-CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEE
Q 013019          274 G---ITATVID--------PAD--------MEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVC  330 (451)
Q Consensus       274 G---i~v~~vd--------~~D--------~d~Le~ai~~-~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lV  330 (451)
                      +   -.+..++        ..+        ++.+++.++. .++.+|++|...+..+.+.+   +++|.++|++||+++|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI  266 (459)
T PRK06082        187 GPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLI  266 (459)
T ss_pred             CCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence            0   0111221        111        3457777752 24889999987765444455   8999999999999999


Q ss_pred             EecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH
Q 013019          331 IDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (451)
Q Consensus       331 VD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~  404 (451)
                      +||++..    +  +..+-...-.||++  ++|.++|.. ...|.+++++++.+.............+|..+..++..|+
T Consensus       267 ~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~-~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~  343 (459)
T PRK06082        267 IDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGL-VPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIE  343 (459)
T ss_pred             EechhhCCCccchhhHhHhhCCCCCEEE--ecccccCCC-CcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHH
Confidence            9999542    1  11122223368887  899998742 2356777777765332210011122346776666665666


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEecCCC
Q 013019          405 TLHL--RVQQQNSTALRMAEILE----AHPKVLLLFITLL  438 (451)
Q Consensus       405 tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~~V~yPgL  438 (451)
                      .+..  .+++..+..+.|.+.|+    ++|.|..|+.-||
T Consensus       344 ~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl  383 (459)
T PRK06082        344 VIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGL  383 (459)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccc
Confidence            5532  23444455555555553    4677777766554

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.07  E-value=2.2e-08  Score=106.24  Aligned_cols=230  Identities=14%  Similarity=0.161  Sum_probs=137.8

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcchH-HHHH-------
Q 013019          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTR-IFIE-------  267 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t~-~~l~-------  267 (451)
                      .+.++...+|.++|+++.+.  +.+.+++||++|+..++....+       + ..+||.....|.+.. ..+.       
T Consensus        93 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~  172 (453)
T PRK06943         93 GCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALF  172 (453)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhh
Confidence            35677888899999998764  4677788999999998876421       2 357888888887732 1110       


Q ss_pred             -HhhhcCCcEEEEeCC-----------------CCHHHHHHhhcC--CCeEEEEEeC-CCCCccccc-c---HHHHHHHH
Q 013019          268 -TVLPKMGITATVIDP-----------------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCV-D---VKLVSDLC  322 (451)
Q Consensus       268 -~~l~~~Gi~v~~vd~-----------------~D~d~Le~ai~~--~~tklV~les-PsNPtG~v~-D---L~~IaelA  322 (451)
                       ......-..+..++.                 .+++++++.++.  +++.+|++|. +..-.|.+. +   +++|.++|
T Consensus       173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc  252 (453)
T PRK06943        173 KDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALC  252 (453)
T ss_pred             hcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHH
Confidence             000000001111211                 124677777742  3589999997 355455543 2   88999999


Q ss_pred             HhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh----HhhCC--C
Q 013019          323 HKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----HVLGG--A  390 (451)
Q Consensus       323 ~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~----~~~G~--~  390 (451)
                      ++||+++|+||++..    +  +..+-...-.||++  +.|.++|. -+..|.+++++++.+.+....    ...+.  .
T Consensus       253 ~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt--~gKgl~gG-~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~  329 (453)
T PRK06943        253 DRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC--LSKGISGG-YLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYT  329 (453)
T ss_pred             HHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe--eehhhccC-cccceEEEEcHHHHHhhcccCccCCccCCCCCC
Confidence            999999999998532    1  11122223368888  68998864 124677788888887764211    01121  2


Q ss_pred             ccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH---HcCCCeEEEecCCC
Q 013019          391 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEIL---EAHPKVLLLFITLL  438 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L---~~~p~V~~V~yPgL  438 (451)
                      .+|..+..++..|+.+..  -+++..+..++|.+.|   .++|.|..|+.-|+
T Consensus       330 gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl  382 (453)
T PRK06943        330 GNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGT  382 (453)
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEeEecccc
Confidence            366666666655655532  1344444444555544   34677776665444

>PRK07678 aminotransferase; Validated

Probab=99.07  E-value=2.6e-08  Score=105.58  Aligned_cols=228  Identities=14%  Similarity=0.159  Sum_probs=137.1

Q ss_pred             CCchhHHHHHHHHHhhhCCC-cEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchH-HHHHHh-------
Q 013019          207 YGNPTTVVVEEKMSALEGAE-STVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTR-IFIETV-------  269 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae-~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~-~~l~~~-------  269 (451)
                      +.++...+|.++|.++.+.. .+.+++||++|+..++.....       +| .+||.....|.+.. ..+...       
T Consensus        86 ~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~  165 (451)
T PRK07678         86 QSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKY  165 (451)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCccccc
Confidence            56777888999999988653 566668999999998875432       23 56888887776632 222100       


Q ss_pred             -hhcCCcEEEEeCCC--------------C---HHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHHHHh
Q 013019          270 -LPKMGITATVIDPA--------------D---MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (451)
Q Consensus       270 -l~~~Gi~v~~vd~~--------------D---~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~IaelA~~  324 (451)
                       .....-.+..++..              |   ++.+++.++   ++++.+|++|....-.|.+.+    +++|.++|++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~  245 (451)
T PRK07678        166 KYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQK  245 (451)
T ss_pred             ccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Confidence             00000011222211              1   223566663   235899999977655565543    8999999999


Q ss_pred             cCCEEEEecCCCC-CC-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh------HhhCCCcc
Q 013019          325 KGAIVCIDGTFAT-PL-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH------HVLGGALN  392 (451)
Q Consensus       325 ~g~~lVVD~tfa~-~~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~------~~~G~~ls  392 (451)
                      ||+++|+||++.. +.     ..+-...-.||++  ++|.++|.. +..|.+++++++.+.+....      .......+
T Consensus       246 ~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lggG~-~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gn  322 (451)
T PRK07678        246 HGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITSAY-LPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGN  322 (451)
T ss_pred             cCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eecccccCC-cceeEEEEcHHHHHHHhccCcccccccCCCCCcC
Confidence            9999999998532 11     1121223368886  699998752 34788888988887765311      11112346


Q ss_pred             HHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCeEEEecCC
Q 013019          393 PNAAYLIIRGMKTLHL--RVQQQNSTALRMAEIL----EAHPKVLLLFITL  437 (451)
Q Consensus       393 ~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L----~~~p~V~~V~yPg  437 (451)
                      |..+..++..|+.+..  .+++..+..+.|.+.|    +++|.|..|+.-|
T Consensus       323 p~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~G  373 (451)
T PRK07678        323 PAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKG  373 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence            7776666666665543  2344444444444444    4567766665443

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.04  E-value=3.3e-08  Score=104.73  Aligned_cols=196  Identities=14%  Similarity=0.139  Sum_probs=117.2

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhh-----c--CC
Q 013019          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP-----K--MG  274 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~-----~--~G  274 (451)
                      +.++...+|.++|+++.+.   +.+.+++||++|+..++....  ....+||.....|.+.....-..-.     +  ++
T Consensus        94 ~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~  173 (451)
T PRK06918         94 MMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFG  173 (451)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCC
Confidence            4567888899999998753   467778899999999887442  1234688877777663321111100     0  01


Q ss_pred             ---cEEEEeCCCC-----------------HHHHHHhh----cCCCeEEEEEeCCCCCccccc---c-HHHHHHHHHhcC
Q 013019          275 ---ITATVIDPAD-----------------MEGLEAAL----NNNNVSLFFTESPTNPFLRCV---D-VKLVSDLCHKKG  326 (451)
Q Consensus       275 ---i~v~~vd~~D-----------------~d~Le~ai----~~~~tklV~lesPsNPtG~v~---D-L~~IaelA~~~g  326 (451)
                         ..+..++..+                 ++.+++.+    .++++.+|++|....-.|.+.   + +++|.++|++||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~g  253 (451)
T PRK06918        174 PFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHG  253 (451)
T ss_pred             CCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcC
Confidence               1122221110                 12333333    233588999986554345433   2 889999999999


Q ss_pred             CEEEEecCCCCC-Ccccc---ccCC--CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHH
Q 013019          327 AIVCIDGTFATP-LNQKA---LSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLII  400 (451)
Q Consensus       327 ~~lVVD~tfa~~-~~~~p---l~~G--aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~l  400 (451)
                      +++|+||++... ....+   ..++  .|++  +++|.+++ | ...|++++++++++.+...........++..+..++
T Consensus       254 illI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~~-G-~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~  329 (451)
T PRK06918        254 ILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLGA-G-VPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAAL  329 (451)
T ss_pred             CEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhcC-C-CccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHH
Confidence            999999996432 11111   1223  5644  79999984 4 578999999988887654332222334666665544


Q ss_pred             HhhHHH
Q 013019          401 RGMKTL  406 (451)
Q Consensus       401 rgL~tl  406 (451)
                      ..++.+
T Consensus       330 a~l~~i  335 (451)
T PRK06918        330 AVLDII  335 (451)
T ss_pred             HHHHHH
Confidence            444433

>PRK07480 putative aminotransferase; Validated

Probab=99.04  E-value=5.1e-08  Score=103.51  Aligned_cols=230  Identities=16%  Similarity=0.179  Sum_probs=135.2

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchH-HHHHH-----h
Q 013019          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTR-IFIET-----V  269 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~-~~l~~-----~  269 (451)
                      .+.++...+|.++|+++.+.  +.+.+++||++|+..++.....       +| .+||.....|.+.. ..+..     .
T Consensus        90 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~  169 (456)
T PRK07480         90 KTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYM  169 (456)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhh
Confidence            35678888999999998853  5788889999999998875432       23 46888777776632 11110     0


Q ss_pred             hhcCCc---EEEEeCCC---------C--------HHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHHH
Q 013019          270 LPKMGI---TATVIDPA---------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLC  322 (451)
Q Consensus       270 l~~~Gi---~v~~vd~~---------D--------~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~IaelA  322 (451)
                      -...+.   .+..++..         +        .+.+++.+.   .+++.+|++|....-.|.+.+    +++|.++|
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc  249 (456)
T PRK07480        170 HEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRIC  249 (456)
T ss_pred             hcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence            000111   11222210         1        255655452   135899999987765666554    89999999


Q ss_pred             HhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHH-HhH-hhC--CCcc
Q 013019          323 HKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LHH-VLG--GALN  392 (451)
Q Consensus       323 ~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~-~~~-~~G--~~ls  392 (451)
                      ++||+++|+||++..    +  +...-...-.||++  ++|.++|. -+..|.+++++++.+.+.. ... ..+  ...+
T Consensus       250 ~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gn  326 (456)
T PRK07480        250 RKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTSG-YIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGH  326 (456)
T ss_pred             HHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhccC-CccceEEEEcHHHHHHHhcCCCCcccCCCCCcC
Confidence            999999999998532    1  11221222357776  79999863 1235667778888777631 110 111  2346


Q ss_pred             HHHHHHHHHhhHHHHH--HHHHH-HHHHHHHHHHH---HcCCCeEEEecCCC
Q 013019          393 PNAAYLIIRGMKTLHL--RVQQQ-NSTALRMAEIL---EAHPKVLLLFITLL  438 (451)
Q Consensus       393 ~~~a~l~lrgL~tl~~--Rl~~~-~~nA~~Lae~L---~~~p~V~~V~yPgL  438 (451)
                      |..+..++..|+.+..  -+++. .+....|.+.|   .++|.|..|+.-|+
T Consensus       327 pl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Gl  378 (456)
T PRK07480        327 PVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGL  378 (456)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecc
Confidence            7776666666665532  12333 23344444444   45776766665443

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.04  E-value=2.7e-08  Score=106.07  Aligned_cols=215  Identities=16%  Similarity=0.165  Sum_probs=135.0

Q ss_pred             CchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHH-HHh---------hhcCC
Q 013019          208 GNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFI-ETV---------LPKMG  274 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~g-ae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l-~~~---------l~~~G  274 (451)
                      .++...+|.++|.++.. .+...+++||++|+..++.....  ..++||.....|.+....+ ...         ....|
T Consensus       137 ~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g  216 (474)
T PLN02482        137 PCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPG  216 (474)
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCC
Confidence            56667778888888774 47788889999999998875432  2357888888787743211 110         00111


Q ss_pred             c------EEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC----
Q 013019          275 I------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP----  338 (451)
Q Consensus       275 i------~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~----  338 (451)
                      +      .+..++..|++++++.++.  +++.+|++|......|.+.+    +++|.++|++||+++|+||++...    
T Consensus       217 ~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~  296 (474)
T PLN02482        217 VPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAY  296 (474)
T ss_pred             CCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCc
Confidence            1      2233455688999988853  24889999988777776665    678999999999999999996321    


Q ss_pred             -CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-HhhCCC--ccHHHHHHHHHhhHHHH--HHHHH
Q 013019          339 -LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGA--LNPNAAYLIIRGMKTLH--LRVQQ  412 (451)
Q Consensus       339 -~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-~~~G~~--ls~~~a~l~lrgL~tl~--~Rl~~  412 (451)
                       ..+.-+..-.|+++  ++|.++|.  .-.|.+++++++++.+.... ...+.+  .+|..+...+..|+.+.  ...++
T Consensus       297 ~ga~~~~gv~PDi~t--~gK~lggG--~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~  372 (474)
T PLN02482        297 GGAQEYFGITPDLTT--LGKVIGGG--LPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEY  372 (474)
T ss_pred             chHhHHhCCCCCEEE--ecchhhCC--CceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHH
Confidence             11111222357754  79999864  34566688999888775321 112222  34555555555555443  23455


Q ss_pred             HHHHHHHHHHHHHc
Q 013019          413 QNSTALRMAEILEA  426 (451)
Q Consensus       413 ~~~nA~~Lae~L~~  426 (451)
                      ..+..+.|.+.|++
T Consensus       373 ~~~~g~~l~~~L~~  386 (474)
T PLN02482        373 LDKITKKLIQGILE  386 (474)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55556666665543

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.03  E-value=5e-08  Score=102.86  Aligned_cols=228  Identities=13%  Similarity=0.126  Sum_probs=139.3

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcch-HHHHHH------
Q 013019          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKT-RIFIET------  268 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t-~~~l~~------  268 (451)
                      .+.++...+|.++|.++..  .+.+.+++||++|+..++.....       +| .+|+.....|.+. ...+..      
T Consensus        83 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~  162 (429)
T PRK06173         83 GFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTG  162 (429)
T ss_pred             ccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchh
Confidence            3467778889999998874  36777889999999998875432       23 4688888877662 221110      


Q ss_pred             hhhcCC---cEEEEeCCC-----------CHHHHHHhhc--CCCeEEEEEeCC-CCCccccc-c---HHHHHHHHHhcCC
Q 013019          269 VLPKMG---ITATVIDPA-----------DMEGLEAALN--NNNVSLFFTESP-TNPFLRCV-D---VKLVSDLCHKKGA  327 (451)
Q Consensus       269 ~l~~~G---i~v~~vd~~-----------D~d~Le~ai~--~~~tklV~lesP-sNPtG~v~-D---L~~IaelA~~~g~  327 (451)
                      .-..++   -.+.+++..           +++.|++.+.  .+++.+|++|.. ..-.|... +   +++|.++|++||+
T Consensus       163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~  242 (429)
T PRK06173        163 MHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV  242 (429)
T ss_pred             hhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC
Confidence            000000   011222211           3566777774  235899999974 55445443 2   7899999999999


Q ss_pred             EEEEecCCCCCCc-------cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh---HhhC--CCccHHH
Q 013019          328 IVCIDGTFATPLN-------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLG--GALNPNA  395 (451)
Q Consensus       328 ~lVVD~tfa~~~~-------~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~---~~~G--~~ls~~~  395 (451)
                      ++|+||++ +++.       ..-...-.||++  ++|.++|. -+.++.+++++++.+.+....   ...+  ...+|..
T Consensus       243 llI~DEv~-tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~  318 (429)
T PRK06173        243 LLIFDEIA-TGFGRTGKLFALEHAGVVPDIMC--IGKALTGG-YLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLA  318 (429)
T ss_pred             eEEecchh-cCCCcCCcchHHHhcCCCCCEEE--eehhhhCC-ccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHH
Confidence            99999996 3321       111122357887  89999653 234677788888877764210   1122  2346777


Q ss_pred             HHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCeEEEecCC
Q 013019          396 AYLIIRGMKTLHL--RVQQQNSTALRMAEILE---AHPKVLLLFITL  437 (451)
Q Consensus       396 a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~---~~p~V~~V~yPg  437 (451)
                      +..++..|+.+..  .+++..++.+.+.+.|+   ++|.|..|+.-|
T Consensus       319 ~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~G  365 (429)
T PRK06173        319 CAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLG  365 (429)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccc
Confidence            7766666666542  24555666667777665   356565554433

>PRK06149 hypothetical protein; Provisional

Probab=99.03  E-value=6.1e-08  Score=111.73  Aligned_cols=230  Identities=13%  Similarity=0.136  Sum_probs=139.3

Q ss_pred             ccCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHH---HccCCCeEEEcCCCCcc-hHHHHHH--hh---hc
Q 013019          204 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRK-TRIFIET--VL---PK  272 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~a---ll~~GD~VIv~~~~Y~~-t~~~l~~--~l---~~  272 (451)
                      .+|+.++...+|.++|+++..  .+.+++++||++|+..++..   +.. ..+||..+..|.+ +.....-  ..   ..
T Consensus       618 ~~~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~  696 (972)
T PRK06149        618 NSRFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAASG-RRDVVSVLEAYHGWTVATDAVSTSIADNPQ  696 (972)
T ss_pred             cccccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhcC-CCeEEEEeCCCCCcChhHhhhcCCcccccc
Confidence            356677888999999999883  47788899999999999873   322 3457777766665 3221110  00   00


Q ss_pred             C--Cc--EEEEeC--------C--CC-----HHHHHHhhc-----CCCeEEEEEeCCCCCcccccc----HHHHHHHHHh
Q 013019          273 M--GI--TATVID--------P--AD-----MEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (451)
Q Consensus       273 ~--Gi--~v~~vd--------~--~D-----~d~Le~ai~-----~~~tklV~lesPsNPtG~v~D----L~~IaelA~~  324 (451)
                      .  ..  .+..++        .  .+     .+++++.++     ..++.+|++|......|.+.+    +++|.++|++
T Consensus       697 ~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~  776 (972)
T PRK06149        697 ALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRA  776 (972)
T ss_pred             ccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHH
Confidence            0  00  011111        0  11     233333332     235889999987776777776    9999999999


Q ss_pred             cCCEEEEecCCC-CCCccc------cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhh-CCCccHHHH
Q 013019          325 KGAIVCIDGTFA-TPLNQK------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL-GGALNPNAA  396 (451)
Q Consensus       325 ~g~~lVVD~tfa-~~~~~~------pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~-G~~ls~~~a  396 (451)
                      ||+++|+||++. .+....      -...-.||++  ++|.+++.  ...|++++++++.+.+....... +...+|..+
T Consensus       777 ~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt--~gK~lg~G--~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~  852 (972)
T PRK06149        777 RGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIIT--MAKGMGNG--HPLGAVITRREIAEALEAEGYFFSSTGGSPVSC  852 (972)
T ss_pred             cCCEEEEEeehhcCCccCccchhhhhcCCCCCEEE--ecccccCC--eeeEEEEEcHHHHhhhccCCcccCCCCCCHHHH
Confidence            999999999962 221111      1122358874  79999864  35788899998888775311111 234577777


Q ss_pred             HHHHHhhHHHHHH--HHHHHHHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          397 YLIIRGMKTLHLR--VQQQNSTALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       397 ~l~lrgL~tl~~R--l~~~~~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      ..++..|+.+...  .++..+....|.+.|    .++|.|..|+.-||
T Consensus       853 aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl  900 (972)
T PRK06149        853 RIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHPLIGAVHGMGL  900 (972)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecce
Confidence            7766666655421  222323334444444    34777777765544

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.03  E-value=9e-09  Score=106.50  Aligned_cols=201  Identities=15%  Similarity=0.184  Sum_probs=130.8

Q ss_pred             HHHHHHHHHhhhCCC--c-E-EEeCCHHHHHHHHHHHHc-cCCCeEEEcCCCCcchHHHHHHhhhcCCc-EEEEeC----
Q 013019          212 TVVVEEKMSALEGAE--S-T-VIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGI-TATVID----  281 (451)
Q Consensus       212 ~~~Lee~LA~l~gae--~-~-vv~sSG~aAi~~al~all-~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi-~v~~vd----  281 (451)
                      ..+.++.|.++++.+  . + ++.+||+.++.+++..++ ++||+|++.. .|+.  ++..++++.+|+ +++.++    
T Consensus        41 ~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~--r~~~eia~~~g~~~v~~l~~~~g  117 (374)
T TIGR01365        41 LAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGK--GWVTDVTKQLKLPDVRVLEAEYG  117 (374)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHH--HHHHHHHHhcCCCCcEEEcCCCC
Confidence            445688888888852  2 3 446789999999999999 5898888754 4443  333356677888 466554    


Q ss_pred             -CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCC---CCccccccCCCcEEEECCcc
Q 013019          282 -PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT---PLNQKALSLGADLVLHSATK  357 (451)
Q Consensus       282 -~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~---~~~~~pl~~GaDiVv~S~SK  357 (451)
                       ..|+++++.  ++ .+-++..|   -.||...|+++|....  +++++|||.+-+.   ++..+    ++|+++.|..|
T Consensus       118 ~~~~~~~ve~--~~-~v~~vhnE---TSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d----~iDv~~tgsQK  185 (374)
T TIGR01365       118 KLPDLKKVDF--KN-DVVFTWNG---TTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH----KLDVVTFSWQK  185 (374)
T ss_pred             CCCCHHHcCC--CC-CEEEecCC---Cchheecccccccccc--CCCcEEEEccchhcCCCCChh----HCcEEEEechh
Confidence             236777762  22 22222222   2468888987665322  5899999998432   23222    48999999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHh------H-------------hh-CC---CccHHHHHHHHHhhH------HHHH
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLH------H-------------VL-GG---ALNPNAAYLIIRGMK------TLHL  408 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~------~-------------~~-G~---~ls~~~a~l~lrgL~------tl~~  408 (451)
                      .|++++  ..++++.+++.+++++...      .             .. +.   +.+-...+.+++.|+      .++.
T Consensus       186 ~L~~pp--Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~  263 (374)
T TIGR01365       186 VLGGEG--AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKP  263 (374)
T ss_pred             ccCCCC--ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHH
Confidence            999887  4678888888877655311      0             01 11   111222333333342      3778


Q ss_pred             HHHHHHHHHHHHHHHHHcCCC
Q 013019          409 RVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      |.+|+.++++.+.+++++.+.
T Consensus       264 ~~~Rh~~~a~~l~~~l~~lg~  284 (374)
T TIGR01365       264 LIARADDNLAVLEAFVAKNNW  284 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC
Confidence            899999999999999998763

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.01  E-value=8.7e-08  Score=101.37  Aligned_cols=225  Identities=12%  Similarity=0.086  Sum_probs=134.0

Q ss_pred             CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHc-cC-CCeEEEcCCCCcchH-HHHHHhh----hc--C
Q 013019          206 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV-PA-GGHIVTTTDCYRKTR-IFIETVL----PK--M  273 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all-~~-GD~VIv~~~~Y~~t~-~~l~~~l----~~--~  273 (451)
                      .+.++...+|.++|.++.+   .+.+.+++||++|+..++.... -. .++|+.....|.+.. ..+...-    ..  +
T Consensus        93 ~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~  172 (441)
T PRK05769         93 DFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGF  172 (441)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCC
Confidence            4567888899999999875   2567778899999999886432 12 356888777776633 2221100    00  0


Q ss_pred             C---cEEEEeCC----------CC--------HHHHHH-hhc----CCCeEEEEEeCCCCCcccccc----HHHHHHHHH
Q 013019          274 G---ITATVIDP----------AD--------MEGLEA-ALN----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (451)
Q Consensus       274 G---i~v~~vd~----------~D--------~d~Le~-ai~----~~~tklV~lesPsNPtG~v~D----L~~IaelA~  323 (451)
                      +   -.+..++.          .+        ++.+++ .++    ..++.+|++|......|.+.+    +++|.++|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~  252 (441)
T PRK05769        173 FPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLAD  252 (441)
T ss_pred             CCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH
Confidence            0   01222221          11        233555 222    235899999988777788777    999999999


Q ss_pred             hcCCEEEEecCCCCC-C-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHH
Q 013019          324 KKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY  397 (451)
Q Consensus       324 ~~g~~lVVD~tfa~~-~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~  397 (451)
                      +||+++|+||++... .     .......-.|+++  ++|.+++.  ..+|++++++++++.+.... ......+|..+.
T Consensus       253 ~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~~G--~p~gav~~~~~i~~~~~~~~-~~T~~g~p~~~a  327 (441)
T PRK05769        253 KYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIAGG--LPLGAVIGRAELMFLPPGSH-ANTFGGNPVAAA  327 (441)
T ss_pred             HcCCEEEEechhhCCCcccceehhhccCCCCCEEE--EcccccCC--cccEEEEEehhhhhcCCCCC-CCCCCcCHHHHH
Confidence            999999999996521 1     1111122248875  78999853  45788888888764322111 111123566665


Q ss_pred             HHHHhhHHHHH-HHHHHHHHHHHHHHHHH----cCCCeEEEec
Q 013019          398 LIIRGMKTLHL-RVQQQNSTALRMAEILE----AHPKVLLLFI  435 (451)
Q Consensus       398 l~lrgL~tl~~-Rl~~~~~nA~~Lae~L~----~~p~V~~V~y  435 (451)
                      .++..|+.+.. .+++..+..+.|.+.|+    ++|.+..|+.
T Consensus       328 aa~a~L~~l~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg  370 (441)
T PRK05769        328 AALATLEELEEGLLENAQKLGEYLRKELKELKEKYEFIGDVRG  370 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeec
Confidence            55555555432 23444455555555553    3666656543

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.01  E-value=2.4e-08  Score=105.33  Aligned_cols=214  Identities=13%  Similarity=0.171  Sum_probs=135.1

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-CC-CeEEEcCCCCcchHHH-HHH-hh---------h
Q 013019          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-AG-GHIVTTTDCYRKTRIF-IET-VL---------P  271 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-~G-D~VIv~~~~Y~~t~~~-l~~-~l---------~  271 (451)
                      +.++...+|-++|.++.+.  +.+.+++||++|+..++..... .| .+|+.....|.+.... +.. .+         .
T Consensus        90 ~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~  169 (433)
T PRK00615         90 LTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTH  169 (433)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCC
Confidence            4567778888899888754  4677889999999998875432 23 5677777777663211 100 00         0


Q ss_pred             cC-----CcEEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCC-
Q 013019          272 KM-----GITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-  339 (451)
Q Consensus       272 ~~-----Gi~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~-  339 (451)
                      ..     ......++..|++++++.+.+  +++.+|++|......|.+.+    +++|.++|++||+++|+||++. ++ 
T Consensus       170 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R  248 (433)
T PRK00615        170 LVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFR  248 (433)
T ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-ccc
Confidence            00     001122344578888888752  34789999988777777766    5699999999999999999973 22 


Q ss_pred             c-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-hhCC--CccHHHHHHHHHhhHHHHH--H
Q 013019          340 N-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLHL--R  409 (451)
Q Consensus       340 ~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-~~G~--~ls~~~a~l~lrgL~tl~~--R  409 (451)
                      .     ..-...-.||++  ++|.++|.  ..+|++++++++++.+..... ..+.  ..+|..+..++..|+.+..  .
T Consensus       249 ~G~~ga~~~~gv~PDi~~--~gK~lggG--~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~  324 (433)
T PRK00615        249 VAQGGAAAIYHVKPDITV--YGKILGGG--LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGF  324 (433)
T ss_pred             ccHhHHHHhcCCCCCeEE--EcccccCC--cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccH
Confidence            1     111122357776  79999853  347889999998887753211 1222  2467776666666655532  2


Q ss_pred             HHHHHHHHHHHHHHHH
Q 013019          410 VQQQNSTALRMAEILE  425 (451)
Q Consensus       410 l~~~~~nA~~Lae~L~  425 (451)
                      +++..++.+.+.+.|+
T Consensus       325 ~~~~~~~g~~l~~~l~  340 (433)
T PRK00615        325 YTQLSTLEQNFLSPIE  340 (433)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4445555555544443

>PRK06062 hypothetical protein; Provisional

Probab=99.01  E-value=6.8e-08  Score=102.46  Aligned_cols=232  Identities=14%  Similarity=0.097  Sum_probs=140.4

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-C-CCeEEEcCCCCcch-HHHHHHh----hhc--
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-A-GGHIVTTTDCYRKT-RIFIETV----LPK--  272 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-~-GD~VIv~~~~Y~~t-~~~l~~~----l~~--  272 (451)
                      ...+.++...+|.++|+++...  +.+.+++||++|+..++..... . ..+||.....|.+. ...+...    ...  
T Consensus        89 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~  168 (451)
T PRK06062         89 APAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPND  168 (451)
T ss_pred             CCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCC
Confidence            3456788888999999998743  5777889999999998875422 2 35688877777663 2222110    000  


Q ss_pred             ---CCcEEEEeC---------CCC-------HHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcC
Q 013019          273 ---MGITATVID---------PAD-------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKG  326 (451)
Q Consensus       273 ---~Gi~v~~vd---------~~D-------~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g  326 (451)
                         .|+.....+         ..|       ++.+++.++.   +++.+|++|......|.+.+    +++|.++|+++|
T Consensus       169 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g  248 (451)
T PRK06062        169 TGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHG  248 (451)
T ss_pred             CCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcC
Confidence               111110000         012       5677777742   35889999988777777776    999999999999


Q ss_pred             CEEEEecCCCCC----C--ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhC--CCccHHHHHH
Q 013019          327 AIVCIDGTFATP----L--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GALNPNAAYL  398 (451)
Q Consensus       327 ~~lVVD~tfa~~----~--~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G--~~ls~~~a~l  398 (451)
                      +++|+||++...    .  ...-...-.||++  ++|.+++. -+..|.+++++++++.+.......+  ...+|..+..
T Consensus       249 ~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t--~gK~lggG-~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aa  325 (451)
T PRK06062        249 IVLIADEVMAGFGRTGKWFAIEHFGVVPDLIT--FAKGVNSG-YVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAA  325 (451)
T ss_pred             CEEEeeccccCCCcCcHHHHHHhcCCCCCeee--echhhhcC-CcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHH
Confidence            999999996431    1  1121222357665  79999863 1225667777888877653211111  1235777766


Q ss_pred             HHHhhHHHHHH--HHHHHHHH-HHHHHHH----HcCCCeEEEecCCC
Q 013019          399 IIRGMKTLHLR--VQQQNSTA-LRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       399 ~lrgL~tl~~R--l~~~~~nA-~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      ++..|+.+...  +++..+.. ..+.+.|    +++|.|..|+.-|+
T Consensus       326 a~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl  372 (451)
T PRK06062        326 AVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGV  372 (451)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEecccc
Confidence            66666655321  22222222 2233333    44677777776666

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.00  E-value=4.4e-08  Score=103.00  Aligned_cols=167  Identities=16%  Similarity=0.118  Sum_probs=107.0

Q ss_pred             CCchhHHHHHHHHHhhhC----CC-cEEEe-CCHHHHHHHHHHHHc--cCCCeEEEcCCCCcc-hHHHHHHh-----hhc
Q 013019          207 YGNPTTVVVEEKMSALEG----AE-STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRK-TRIFIETV-----LPK  272 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g----ae-~~vv~-sSG~aAi~~al~all--~~GD~VIv~~~~Y~~-t~~~l~~~-----l~~  272 (451)
                      +.++...+|.++|+++..    .+ ...++ +||++|+..++....  ....+||.....|.+ +...+...     -..
T Consensus        79 ~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~  158 (425)
T PRK09264         79 MHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQG  158 (425)
T ss_pred             cCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccC
Confidence            356777888888888642    23 34454 699999999887543  223568887777766 33222110     011


Q ss_pred             CCc---EEEEeCC--------CCHHHHHHhhcC-----CCeEEEEEeCCCCCccccc----cHHHHHHHHHhcCCEEEEe
Q 013019          273 MGI---TATVIDP--------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCID  332 (451)
Q Consensus       273 ~Gi---~v~~vd~--------~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~----DL~~IaelA~~~g~~lVVD  332 (451)
                      ++.   .+..++.        .|++++++.+++     +++.+|++|......|.+.    .+++|.++|++||+++|+|
T Consensus       159 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D  238 (425)
T PRK09264        159 AGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVD  238 (425)
T ss_pred             CCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEe
Confidence            111   2333433        367788888852     2478999998877666543    4899999999999999999


Q ss_pred             cCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHH
Q 013019          333 GTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL  376 (451)
Q Consensus       333 ~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el  376 (451)
                      |++...      +.........|+++  ++|.+++.| ...|++++++++
T Consensus       239 EV~tG~GrtG~~~~~~~~~v~PDi~t--~~K~l~~~G-~pigav~~~~~i  285 (425)
T PRK09264        239 DIQAGCGRTGTFFSFERAGITPDIVT--LSKSISGYG-LPMALVLIKPEL  285 (425)
T ss_pred             chhhCCccccHHHHHhhcCCCCCEEE--eccccCCCc-cceEEEEEchhh
Confidence            997421      11121223457664  679998755 457888888775

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.00  E-value=1.1e-07  Score=101.08  Aligned_cols=225  Identities=14%  Similarity=0.099  Sum_probs=133.1

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcc-hHHHHHHh-h---hcCCc---
Q 013019          208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRK-TRIFIETV-L---PKMGI---  275 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~-t~~~l~~~-l---~~~Gi---  275 (451)
                      .++...+|.++|+++.+.  +.+.+++||++|+..++....  ....+||.....|.+ +...+... .   .+.+.   
T Consensus        94 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~  173 (457)
T PRK05639         94 HSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPL  173 (457)
T ss_pred             CCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCC
Confidence            356777899999988753  567888999999999887543  223468877777766 32222110 0   00111   


Q ss_pred             --EEEEeCCC-------------CH--------HHHHHhh-----cCCCeEEEEEeCCCCCcccccc----HHHHHHHHH
Q 013019          276 --TATVIDPA-------------DM--------EGLEAAL-----NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (451)
Q Consensus       276 --~v~~vd~~-------------D~--------d~Le~ai-----~~~~tklV~lesPsNPtG~v~D----L~~IaelA~  323 (451)
                        .+.+++..             +.        +.+++.+     .++++.+|++|......|.+.+    +++|.++|+
T Consensus       174 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~  253 (457)
T PRK05639        174 MPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLD  253 (457)
T ss_pred             CCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence              12233221             12        2355443     1335899999977665565443    889999999


Q ss_pred             hcCCEEEEecCCCC----CC--ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHH
Q 013019          324 KKGAIVCIDGTFAT----PL--NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAY  397 (451)
Q Consensus       324 ~~g~~lVVD~tfa~----~~--~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~  397 (451)
                      +||+++|+||++..    +.  ...-...-.||++  ++|.+++.  ...|++++++++++... .........+|..+.
T Consensus       254 ~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG--~pi~av~~~~~i~~~~~-~~~~~T~~g~p~~~a  328 (457)
T PRK05639        254 EHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVASG--MGLSGVIGRKELMDLTS-GSALLTPAANPVISA  328 (457)
T ss_pred             HcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcCC--CcceeEEehHHHHhhcC-CCcccCCCcCHHHHH
Confidence            99999999999542    11  1121223368888  89999863  24688888888877211 111112234676666


Q ss_pred             HHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEecCC
Q 013019          398 LIIRGMKTLHL--RVQQQNSTALRMAEILE----AHPKVLLLFITL  437 (451)
Q Consensus       398 l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~~V~yPg  437 (451)
                      .++..|+.+..  .+++..+...+|.+.|+    ++|.+..|+.-|
T Consensus       329 aa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~G  374 (457)
T PRK05639        329 AAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKG  374 (457)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccce
Confidence            65555655532  13444444555555554    467666665443

>PRK07481 hypothetical protein; Provisional

Probab=99.00  E-value=1.2e-07  Score=100.49  Aligned_cols=229  Identities=13%  Similarity=0.097  Sum_probs=134.9

Q ss_pred             CCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcch-HHHHHHh----h
Q 013019          207 YGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKT-RIFIETV----L  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t-~~~l~~~----l  270 (451)
                      +.+|...+|.++|.++.+   .+.+.+++||++|+..++.....       +| .+||.....|.+. ...+...    .
T Consensus        83 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~  162 (449)
T PRK07481         83 TTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVF  162 (449)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCccc
Confidence            467888889999999873   35677788999999998875432       23 5688888888773 2111100    0


Q ss_pred             -hcCC---cEEEEeC--------C--CCHHH--------HHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHH
Q 013019          271 -PKMG---ITATVID--------P--ADMEG--------LEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (451)
Q Consensus       271 -~~~G---i~v~~vd--------~--~D~d~--------Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~Iael  321 (451)
                       ..++   -.+..++        .  .|+++        +++++.   ++++.+|++|....-.|.+.+    +++|.++
T Consensus       163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l  242 (449)
T PRK07481        163 RRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV  242 (449)
T ss_pred             ccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence             0000   0111111        0  13333        344442   235899999987665565543    8999999


Q ss_pred             HHhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-----HhhCC-
Q 013019          322 CHKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGG-  389 (451)
Q Consensus       322 A~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-----~~~G~-  389 (451)
                      |++||+++|+||++..    +  +...-...-.||++  ++|.++|.- +..|.+++++++.+.+....     ...+. 
T Consensus       243 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~-~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T  319 (449)
T PRK07481        243 CDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITSGY-VPLGATMVNARIADAFEANADFGGAIMHGYT  319 (449)
T ss_pred             HHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccCCC-cCceEEEEcHHHHHHHhccCccccccccCCC
Confidence            9999999999998532    1  11222223368887  689998631 23677888888887765311     01121 


Q ss_pred             -CccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEecCCC
Q 013019          390 -ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILE----AHPKVLLLFITLL  438 (451)
Q Consensus       390 -~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~~V~yPgL  438 (451)
                       ..+|..+..++..|+.+..  -+++..+..+.|.+.|+    ++|.|..|+.-|+
T Consensus       320 ~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl  375 (449)
T PRK07481        320 YSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGL  375 (449)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecce
Confidence             2356666655555554432  13334444444444443    3677777765543

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.00  E-value=6.8e-08  Score=101.21  Aligned_cols=167  Identities=13%  Similarity=0.118  Sum_probs=108.0

Q ss_pred             CCchhHHHHHHHHHhhh--C--CC-cEEEe-CCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchH-HHHHHh-----hhc
Q 013019          207 YGNPTTVVVEEKMSALE--G--AE-STVIM-ASGMSASTVMLLALVP--AGGHIVTTTDCYRKTR-IFIETV-----LPK  272 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~--g--ae-~~vv~-sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~-~~l~~~-----l~~  272 (451)
                      +.++...+|.++|+++.  +  .. ...++ +||++|+..++.....  ...+||.....|.+.. ..+...     -..
T Consensus        75 ~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~  154 (412)
T TIGR02407        75 MATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQG  154 (412)
T ss_pred             cCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccC
Confidence            34677788888888864  2  22 34454 7999999998875432  2357888777776632 222110     011


Q ss_pred             CC---cEEEEeCC--------CCHHHHHHhhcC-----CCeEEEEEeCCCCCccccc-c---HHHHHHHHHhcCCEEEEe
Q 013019          273 MG---ITATVIDP--------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCID  332 (451)
Q Consensus       273 ~G---i~v~~vd~--------~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~-D---L~~IaelA~~~g~~lVVD  332 (451)
                      ++   ..+..++.        .+++.+++.+++     +++.+|++|...+..|.+. +   +++|.++|+++|+++|+|
T Consensus       155 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D  234 (412)
T TIGR02407       155 AGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVD  234 (412)
T ss_pred             CCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence            12   12233332        236678887752     2478999999888888743 2   889999999999999999


Q ss_pred             cCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHH
Q 013019          333 GTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL  376 (451)
Q Consensus       333 ~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el  376 (451)
                      |++...      +.........|+++  ++|.+++.| +..|++++++++
T Consensus       235 EV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G-~pigav~~~~~~  281 (412)
T TIGR02407       235 DIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYG-LPLALTLIKPEL  281 (412)
T ss_pred             chhhCCCccchhHHhcccCCCCCEEE--echhccCCc-cceeEEEEchhh
Confidence            996421      11222233468775  679998744 567888888765

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.00  E-value=7.4e-08  Score=101.10  Aligned_cols=224  Identities=16%  Similarity=0.133  Sum_probs=135.8

Q ss_pred             hhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc-cC-CCeEEEcCCCCcc-hHHHHHHhh----h-----cCC
Q 013019          210 PTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV-PA-GGHIVTTTDCYRK-TRIFIETVL----P-----KMG  274 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all-~~-GD~VIv~~~~Y~~-t~~~l~~~l----~-----~~G  274 (451)
                      +...++-++|.++...   ..+++.+||++|+..++.... -. +..||.....|.+ |...+....    .     .+.
T Consensus        99 e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~  178 (447)
T COG0160          99 EPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLP  178 (447)
T ss_pred             hhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCC
Confidence            6677788888887653   557788999999999986432 12 3457777777655 443332111    1     111


Q ss_pred             cEEEEeCCC-----------------CHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCE
Q 013019          275 ITATVIDPA-----------------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (451)
Q Consensus       275 i~v~~vd~~-----------------D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~  328 (451)
                      -.+..++..                 ..+.++..+..     .++.+|++|....-.|.+.+    +++|.++|++||++
T Consensus       179 ~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gil  258 (447)
T COG0160         179 PGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGIL  258 (447)
T ss_pred             CCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence            123333311                 12335554432     24889999999988887764    89999999999999


Q ss_pred             EEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh
Q 013019          329 VCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG  402 (451)
Q Consensus       329 lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg  402 (451)
                      +|+||++..    +  +..+....-.||++  ++|.+++ | +..|.+++++++.+ ...........-+|..+...+.-
T Consensus       259 lI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~-G-~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~Av  333 (447)
T COG0160         259 LIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG-G-LPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAAALAV  333 (447)
T ss_pred             EEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC-C-CceeEEeccHHhcc-cCCcccCCCCCcCHHHHHHHHHH
Confidence            999999642    1  22222222358887  7899997 3 46788899988877 32211111123366666655555


Q ss_pred             hHHHHHH--HHHHHHHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          403 MKTLHLR--VQQQNSTALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       403 L~tl~~R--l~~~~~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      |+.+...  +++..+.-++|.+.|    +++|.|..|+.-||
T Consensus       334 L~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Gl  375 (447)
T COG0160         334 LDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGL  375 (447)
T ss_pred             HHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCceecccccce
Confidence            5544431  233333333344433    45787777776555

>PRK07036 hypothetical protein; Provisional

Probab=98.99  E-value=1.6e-07  Score=99.95  Aligned_cols=229  Identities=14%  Similarity=0.154  Sum_probs=136.4

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcchHHHHHHhhh-----
Q 013019          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTRIFIETVLP-----  271 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t~~~l~~~l~-----  271 (451)
                      +.++...+|.++|.++...  +.+.+++||++|+..++.....       + ..+|+.....|.+........-.     
T Consensus        92 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~  171 (466)
T PRK07036         92 MTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADR  171 (466)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccc
Confidence            4677788899999888743  5677778999999998875321       1 25788878777663211111100     


Q ss_pred             -cCC---cEEEEeCCCC-----------------HHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHHHH
Q 013019          272 -KMG---ITATVIDPAD-----------------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (451)
Q Consensus       272 -~~G---i~v~~vd~~D-----------------~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~IaelA~  323 (451)
                       .++   ..+.+++..+                 .+.+++.+.   .+++.+|++|......|.+.+    +++|.++|+
T Consensus       172 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~  251 (466)
T PRK07036        172 TEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR  251 (466)
T ss_pred             ccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH
Confidence             000   0122221111                 234555553   235899999987766676665    899999999


Q ss_pred             hcCCEEEEecCCCCC-C-----c-cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH---h--HhhC--C
Q 013019          324 KKGAIVCIDGTFATP-L-----N-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL---H--HVLG--G  389 (451)
Q Consensus       324 ~~g~~lVVD~tfa~~-~-----~-~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~---~--~~~G--~  389 (451)
                      +||+++|+||++... -     . +.-+..-.||++  ++|.+++. -+..|.+++++++.+.+...   .  ...|  .
T Consensus       252 ~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~gG-~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~  328 (466)
T PRK07036        252 RYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTSG-YQPLGAVIISERLLDVISGPNAKGNVFTHGFTY  328 (466)
T ss_pred             HcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--EccccccC-ccccEEEEEcHHHHHHHhcccCcCcccccCCCC
Confidence            999999999985321 1     1 111222358876  69999863 12367777888888776531   0  0112  1


Q ss_pred             CccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH---HcCCCeEEEecCCC
Q 013019          390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEIL---EAHPKVLLLFITLL  438 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L---~~~p~V~~V~yPgL  438 (451)
                      ..+|..+..++..|+.+..  .+++..+..++|.+.|   .++|.|..|+.-|+
T Consensus       329 ~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl  382 (466)
T PRK07036        329 SGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHL  382 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeece
Confidence            2467777666666665532  2344444444444444   45677777765543

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.97  E-value=7.8e-08  Score=102.52  Aligned_cols=229  Identities=13%  Similarity=0.135  Sum_probs=134.5

Q ss_pred             CCchhHHHHHHHHHhhhCC-------CcEEEeCCHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcchH-HHHHHh-
Q 013019          207 YGNPTTVVVEEKMSALEGA-------ESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKTR-IFIETV-  269 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga-------e~~vv~sSG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t~-~~l~~~-  269 (451)
                      +.++...+|.++|.++...       +.+.+++||++|+..++.....       + ..+||.....|.+.. ..+... 
T Consensus       104 ~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~  183 (472)
T PRK08742        104 FTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGD  183 (472)
T ss_pred             cCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccC
Confidence            5677888899999987642       4677789999999998875432       2 257888888877632 111100 


Q ss_pred             ---hh-cCC---cEEEEeCCC-----------------CHHHHHHhhc--CCCeEEEEEeC-CCCCcccccc----HHHH
Q 013019          270 ---LP-KMG---ITATVIDPA-----------------DMEGLEAALN--NNNVSLFFTES-PTNPFLRCVD----VKLV  318 (451)
Q Consensus       270 ---l~-~~G---i~v~~vd~~-----------------D~d~Le~ai~--~~~tklV~les-PsNPtG~v~D----L~~I  318 (451)
                         .. .++   ..+.+++..                 +++.+++.++  .+++.+|++|. ..+-.|.+.+    +++|
T Consensus       184 ~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~l  263 (472)
T PRK08742        184 IPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRA  263 (472)
T ss_pred             CcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHH
Confidence               00 000   011222211                 2456677664  23589999996 3544555432    8899


Q ss_pred             HHHHHhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh---H-hhC
Q 013019          319 SDLCHKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---H-VLG  388 (451)
Q Consensus       319 aelA~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~---~-~~G  388 (451)
                      .++|+++|+++|+||++..    +  +..+-...-.||++  +.|.++|. -+..|.+++++++.+.+....   . ..+
T Consensus       264 r~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~--~gKgl~gG-~~Plaav~~~~ei~~~~~~~~~~~~~~h~  340 (472)
T PRK08742        264 RELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLC--LSKGLTGG-FLPLSAVLATQQLYDAFLDDSRERAFLHS  340 (472)
T ss_pred             HHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEE--EcccccCC-CCCcceeeccHHHHHHhhccCccCccCcC
Confidence            9999999999999998432    2  11222223368888  68999764 123677778888877664210   0 112


Q ss_pred             C--CccHHHHHHHHHhhHHHHH-----HHHHHHHHHHHHHHHHHcCCCeEEEecCCC
Q 013019          389 G--ALNPNAAYLIIRGMKTLHL-----RVQQQNSTALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       389 ~--~ls~~~a~l~lrgL~tl~~-----Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                      .  ..+|..+..++..|+.+..     +.++.-+..+.+.+.+.++|.|..|+.-||
T Consensus       341 ~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl  397 (472)
T PRK08742        341 HSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGM  397 (472)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccce
Confidence            2  2356666655555554432     222222222233334566787877776554

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.97  E-value=1.2e-07  Score=99.83  Aligned_cols=228  Identities=13%  Similarity=0.082  Sum_probs=133.1

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcch-HHHHHHhh-----
Q 013019          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKT-RIFIETVL-----  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t-~~~l~~~l-----  270 (451)
                      +.++...+|.++|+++.+  .+...+++||++|+..++.....       +| .+|+.....|.+. ...+...-     
T Consensus        80 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~  159 (422)
T PRK05630         80 LTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGM  159 (422)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccc
Confidence            456778889999999874  36788889999999988875432       22 4688888887763 22221000     


Q ss_pred             -hcCC---cEEEEeCCC--------C----HHHHHHhhcCCCeEEEEEeCC-CCCccccc----cHHHHHHHHHhcCCEE
Q 013019          271 -PKMG---ITATVIDPA--------D----MEGLEAALNNNNVSLFFTESP-TNPFLRCV----DVKLVSDLCHKKGAIV  329 (451)
Q Consensus       271 -~~~G---i~v~~vd~~--------D----~d~Le~ai~~~~tklV~lesP-sNPtG~v~----DL~~IaelA~~~g~~l  329 (451)
                       ..++   -.+.+++..        +    .+.+++.+.+ ++.+|++|.. ..-.|.+.    .+++|.++|++||+++
T Consensus       160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~ll  238 (422)
T PRK05630        160 HSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE-TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILL  238 (422)
T ss_pred             cccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh-ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEE
Confidence             0000   011222111        1    2345555654 4999999963 54445433    3889999999999999


Q ss_pred             EEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH------hHhhCCCccHHHHH
Q 013019          330 CIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL------HHVLGGALNPNAAY  397 (451)
Q Consensus       330 VVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~------~~~~G~~ls~~~a~  397 (451)
                      |+||++... ..     ..-...-.||+  .+.|.++|.- ..+|++++++++.+.+...      ........+|..+.
T Consensus       239 I~DEv~tG~GrtG~~~a~~~~gv~PDi~--t~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~a  315 (422)
T PRK05630        239 IADEIATGFGRTGELFATLAAGVTPDIM--CVGKALTGGF-MSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACA  315 (422)
T ss_pred             EEecceeCCCcCchhhHHHhcCCCCCee--eeechhhcCc-cccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHH
Confidence            999996211 11     11112224777  5799996521 2368888888888776421      11111234676666


Q ss_pred             HHHHhhHHHHH--HHHHHHHHHHHHHHHH---HcCCCeEEEecCCC
Q 013019          398 LIIRGMKTLHL--RVQQQNSTALRMAEIL---EAHPKVLLLFITLL  438 (451)
Q Consensus       398 l~lrgL~tl~~--Rl~~~~~nA~~Lae~L---~~~p~V~~V~yPgL  438 (451)
                      .++..|+.+..  ..++..+....+.+.|   .++|.|..|+.-|+
T Consensus       316 aa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl  361 (422)
T PRK05630        316 VAHASLEIIETGMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGA  361 (422)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhcCCCeeeeecccc
Confidence            65555555432  2334444455555444   34666666655443

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.96  E-value=1.2e-07  Score=101.00  Aligned_cols=230  Identities=14%  Similarity=0.171  Sum_probs=135.9

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------C-CCeEEEcCCCCcch-HHHHHHh-h---
Q 013019          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------A-GGHIVTTTDCYRKT-RIFIETV-L---  270 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~-GD~VIv~~~~Y~~t-~~~l~~~-l---  270 (451)
                      .+.++...+|.++|+++..  .+.+.+++||++|+..++.....       + ..+||.....|.+. ...+... .   
T Consensus        86 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~  165 (466)
T PRK07030         86 GFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALF  165 (466)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccc
Confidence            3567888889999998764  35677889999999998875422       2 24688888877663 2222100 0   


Q ss_pred             -hcCC---cEEEEeCCC-----------------CHHHHHHhhcC--CCeEEEEEeC-CCCCcccccc----HHHHHHHH
Q 013019          271 -PKMG---ITATVIDPA-----------------DMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLC  322 (451)
Q Consensus       271 -~~~G---i~v~~vd~~-----------------D~d~Le~ai~~--~~tklV~les-PsNPtG~v~D----L~~IaelA  322 (451)
                       ..++   -.+..++..                 +++++++.+..  +++.+|++|. ...-.|.+..    +++|.++|
T Consensus       166 ~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc  245 (466)
T PRK07030        166 TETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREAC  245 (466)
T ss_pred             cccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHH
Confidence             0000   011122211                 24566777742  3589999996 3444454432    88999999


Q ss_pred             HhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH-----hHhhCC--
Q 013019          323 HKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGG--  389 (451)
Q Consensus       323 ~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-----~~~~G~--  389 (451)
                      +++|+++|+||++..    +  +.......-.||++  +.|.++|. -+..|.+++++++.+.+...     ....+.  
T Consensus       246 ~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG-~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~  322 (466)
T PRK07030        246 DRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLC--LSKALTGG-YLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSY  322 (466)
T ss_pred             HHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEe--eehhccCC-cccceEEEecHHHHHHHhcccccccccccCCCC
Confidence            999999999998432    1  11222233368888  58998864 12467788898888776421     001122  


Q ss_pred             CccHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHH---HcCCCeEEEecCCC
Q 013019          390 ALNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAEIL---EAHPKVLLLFITLL  438 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~R--l~~~~~nA~~Lae~L---~~~p~V~~V~yPgL  438 (451)
                      ..+|..+..++..|+.+...  +++..+...++.+.|   .++|.|..|+.-||
T Consensus       323 ~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl  376 (466)
T PRK07030        323 TGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTGM  376 (466)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEecee
Confidence            23677666666556555321  233333444444443   34677777765544

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.95  E-value=2e-07  Score=101.80  Aligned_cols=208  Identities=14%  Similarity=0.058  Sum_probs=136.1

Q ss_pred             HHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccC------------------------------------------
Q 013019          213 VVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPA------------------------------------------  248 (451)
Q Consensus       213 ~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~------------------------------------------  248 (451)
                      +++-++|+++.|-  ....++++|+.|+..++.+....                                          
T Consensus       126 ~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~  205 (608)
T TIGR03811       126 EEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQI  205 (608)
T ss_pred             HHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccch
Confidence            3455667788874  35788999998888776553210                                          


Q ss_pred             ----------CC------eEEEcCCCCcchHHHHHHhhhcCCc---EEEEeCC-----CCHHHHHHhhcC----C-CeEE
Q 013019          249 ----------GG------HIVTTTDCYRKTRIFIETVLPKMGI---TATVIDP-----ADMEGLEAALNN----N-NVSL  299 (451)
Q Consensus       249 ----------GD------~VIv~~~~Y~~t~~~l~~~l~~~Gi---~v~~vd~-----~D~d~Le~ai~~----~-~tkl  299 (451)
                                |.      .++++...|.+..    +.+..+|+   .+..++.     .|+++|+++|++    . ++-+
T Consensus       206 ~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~----KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~  281 (608)
T TIGR03811       206 DEIKAHSARSGKDLQKLGKWLVPQTKHYSWL----KAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILG  281 (608)
T ss_pred             hhhhhhccccccccccceEEEECCCccHHHH----HHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEE
Confidence                      00      4666666666544    34444555   2444432     488999888853    1 2456


Q ss_pred             EEEeCCCCCccccccHHHHHHHH---HhcCC--EEEEecCCCCCC---ccc-----------------------------
Q 013019          300 FFTESPTNPFLRCVDVKLVSDLC---HKKGA--IVCIDGTFATPL---NQK-----------------------------  342 (451)
Q Consensus       300 V~lesPsNPtG~v~DL~~IaelA---~~~g~--~lVVD~tfa~~~---~~~-----------------------------  342 (451)
                      |+....+-.+|.+.||++|+++|   +++|+  +++||.+|+...   ...                             
T Consensus       282 VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~  361 (608)
T TIGR03811       282 VVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYIS  361 (608)
T ss_pred             EEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccccccccccccccc
Confidence            67677788899999999999999   66887  699999988632   111                             


Q ss_pred             --------cccCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhH-----------------hhCCCcc--HH
Q 013019          343 --------ALSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHH-----------------VLGGALN--PN  394 (451)
Q Consensus       343 --------pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~-----------------~~G~~ls--~~  394 (451)
                              .+ .++|-+...+||++.-+-  .+|+++. ++++.+.+.....                 ..|...+  ..
T Consensus       362 ~~~~~~l~gl-e~ADSItvDpHK~g~~Py--~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~Al  438 (608)
T TIGR03811       362 REVYNAYKAI-SEAESVTIDPHKMGYIPY--SAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAA  438 (608)
T ss_pred             HhHHHHHhcC-cCceEEEeCcccccccCC--CeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHH
Confidence                    01 258999999999988664  3565554 4554443321111                 1122222  45


Q ss_pred             HHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          395 AAYLIIRG----MKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       395 ~a~l~lrg----L~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ..|+.++.    .+.+...+++..++++++++.|+++
T Consensus       439 klW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       439 SVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66777654    4578888999999999999999884

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.94  E-value=1.2e-07  Score=100.92  Aligned_cols=229  Identities=15%  Similarity=0.136  Sum_probs=136.1

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchHH-HHHHhh-----
Q 013019          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRI-FIETVL-----  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~~-~l~~~l-----  270 (451)
                      +.++...+|.++|+++...  +.+.+++||++|+..++.....       +| .+||.....|.+... .+...-     
T Consensus        96 ~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~  175 (460)
T PRK06916         96 LANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFH  175 (460)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccc
Confidence            3577788899999998753  5677889999999998875432       33 578888888877322 121000     


Q ss_pred             hcCC---cEEEEeCC-----------------CCHHHHHHhhc--CCCeEEEEEeC-CCCCccccc-c---HHHHHHHHH
Q 013019          271 PKMG---ITATVIDP-----------------ADMEGLEAALN--NNNVSLFFTES-PTNPFLRCV-D---VKLVSDLCH  323 (451)
Q Consensus       271 ~~~G---i~v~~vd~-----------------~D~d~Le~ai~--~~~tklV~les-PsNPtG~v~-D---L~~IaelA~  323 (451)
                      ..++   ..+..++.                 .+++++++.++  .+++.+|++|. +..-.|.+. +   +++|.++|+
T Consensus       176 ~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~  255 (460)
T PRK06916        176 QVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCT  255 (460)
T ss_pred             cccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHH
Confidence            0000   01111111                 12456677774  23589999997 455455443 2   889999999


Q ss_pred             hcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH----hH-hhC--CC
Q 013019          324 KKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HH-VLG--GA  390 (451)
Q Consensus       324 ~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~----~~-~~G--~~  390 (451)
                      ++|+++|+||++..    +  +...-...-.||++  +.|.++|. -+..|++++++++.+.+...    .. ..+  ..
T Consensus       256 ~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~  332 (460)
T PRK06916        256 KYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLTGG-YLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYT  332 (460)
T ss_pred             HcCCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhhcC-ccccceeeecHHHHHHhhccccccCccccCCCCC
Confidence            99999999998522    1  11121222358876  79998864 12467788888887765421    00 111  12


Q ss_pred             ccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCeEEEecCCC
Q 013019          391 LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILE---AHPKVLLLFITLL  438 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~---~~p~V~~V~yPgL  438 (451)
                      .+|..+..++..|+.+..  .+++..+....+.+.|+   ++|.|..|+.-||
T Consensus       333 gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl  385 (460)
T PRK06916        333 GNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGL  385 (460)
T ss_pred             CCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCc
Confidence            366666655555555432  23444444555555544   4676767765554

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=98.94  E-value=1.5e-08  Score=100.71  Aligned_cols=160  Identities=19%  Similarity=0.263  Sum_probs=113.2

Q ss_pred             HHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHH-HHHhhhcCCcEEEEeCCCCHHH
Q 013019          213 VVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIF-IETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       213 ~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~-l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      +.|-.+||-+.|+  .+++++.+-+.-++.+|.+.++  +|+.||+++-.-.+|-.+ .+......++..+..-.+.+++
T Consensus        79 ~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~~  158 (407)
T COG3844          79 ERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPRA  158 (407)
T ss_pred             hHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChHH
Confidence            4577888889997  3455554444555666655543  488888887554444322 3333444443322222235779


Q ss_pred             HHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccCCccccce
Q 013019          288 LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGHNDVL  366 (451)
Q Consensus       288 Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l~G~gdv~  366 (451)
                      ++++++++ +.+|++...+--||...|+.+|.+++|++|++++-|=++..+. ..+-...|+|+-|.+..||++|.....
T Consensus       159 ~~~~~~dd-~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGap  237 (407)
T COG3844         159 LEEAITDD-VAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAP  237 (407)
T ss_pred             HHHhhccc-eEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCc
Confidence            99999885 9999998888889999999999999999999999999987653 334446799999999999999765556


Q ss_pred             eEEEEeC
Q 013019          367 AGSISGS  373 (451)
Q Consensus       367 gG~Iv~~  373 (451)
                      +|+.+.+
T Consensus       238 a~l~v~~  244 (407)
T COG3844         238 AGLFVAP  244 (407)
T ss_pred             eeEEecc
Confidence            6665544

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.92  E-value=2.1e-08  Score=102.79  Aligned_cols=211  Identities=17%  Similarity=0.206  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHH---HH-ccCC----CeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          211 TTVVVEEKMSALEGAESTVIM-ASGMSASTVMLL---AL-VPAG----GHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       211 t~~~Lee~LA~l~gae~~vv~-sSG~aAi~~al~---al-l~~G----D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ...+|+++|.++.|-+.+-+. .+|++.-.+-++   +. ...|    +.+|+++..||....    .+...|.+|..++
T Consensus       110 li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPA----SAam~G~~VV~V~  185 (496)
T COG1003         110 LIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPA----SAAMAGFKVVVVK  185 (496)
T ss_pred             HHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChh----hHhhcCceEEEEe
Confidence            456789999999998776665 477754444443   33 2233    479999999998763    3455688888776


Q ss_pred             C-----CCHHHHHHhhcCCCeEEEEEeCCCCCcccc-ccHHHHHHHHHhcCCEEEEecCCCC--CCccccccCCCcEEEE
Q 013019          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLH  353 (451)
Q Consensus       282 ~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v-~DL~~IaelA~~~g~~lVVD~tfa~--~~~~~pl~~GaDiVv~  353 (451)
                      .     .|+++|++++.++ +.++.+.+|+. .|.. .+|.+|+++.|++|..|..|.+-.-  --..+|.++|+|++-.
T Consensus       186 ~~~~G~VDlddLk~k~~~~-~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~Hl  263 (496)
T COG1003         186 CDENGNVDLDDLRAKAEDN-LAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHL  263 (496)
T ss_pred             cCCCCCccHHHHHHHhccc-eeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEe
Confidence            4     3899999999874 99999988883 3433 4799999999999999999998322  1245788999999999


Q ss_pred             CCcccCCccc---cceeEEEEeCHHHHHHHHH------H---h-------------HhhCCCccHHHH--HHHHHhhHHH
Q 013019          354 SATKFIGGHN---DVLAGSISGSGKLVTQIRN------L---H-------------HVLGGALNPNAA--YLIIRGMKTL  406 (451)
Q Consensus       354 S~SK~l~G~g---dv~gG~Iv~~~eli~~lr~------~---~-------------~~~G~~ls~~~a--~l~lrgL~tl  406 (451)
                      -+||+|+.+.   .-.+|-|..+.++..-+-.      .   .             ..+|...--..+  |....|-+.|
T Consensus       264 NLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL  343 (496)
T COG1003         264 NLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADGL  343 (496)
T ss_pred             ecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHHH
Confidence            9999998332   1224555555554432211      0   0             011111101123  3344444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 013019          407 HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ..--+...-||..+++.|+.+
T Consensus       344 ~~ase~AvLNANYia~rL~~~  364 (496)
T COG1003         344 KQASEVAVLNANYIARRLKGY  364 (496)
T ss_pred             HHHHHHHHHhHHHHHHHhhhc
Confidence            555556667888999999863

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.91  E-value=5e-08  Score=109.81  Aligned_cols=211  Identities=18%  Similarity=0.183  Sum_probs=141.3

Q ss_pred             HHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc---cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          214 VVEEKMSALEGAE--STVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       214 ~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all---~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      +++..+++|.|-+  .+-++..++++-.+++++..   ....+|++++.+|+.+...++..+...|+++..      +++
T Consensus       128 e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~------~~~  201 (954)
T PRK12566        128 NFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV------DAV  201 (954)
T ss_pred             HHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE------cch
Confidence            4688999999975  55566666654444444432   124689999999999999998889999999875      344


Q ss_pred             HHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecC-CCCCCccccccCCCcEEEECCc-----ccCCcc
Q 013019          289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSAT-----KFIGGH  362 (451)
Q Consensus       289 e~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~t-fa~~~~~~pl~~GaDiVv~S~S-----K~l~G~  362 (451)
                      ++.+++ ++..|++.+|+ -.|.+.|+++|.+++|++|+++++-.- .+-.+...|.++|+||++.+..     =.+||+
T Consensus       202 ~~~~~~-~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP  279 (954)
T PRK12566        202 DNLAAH-AVFGALLQYPD-THGEIRDLRPLIDQLHGQQALACVAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGP  279 (954)
T ss_pred             hhcCCC-CEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEEEEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCC
Confidence            455655 48999999997 689999999999999999998653322 2334667889999999998643     345666


Q ss_pred             ccceeEEEEeCHHHHHHHHH----------------------------HhHhhCCCcc------HHHHHHHHHhhHHHHH
Q 013019          363 NDVLAGSISGSGKLVTQIRN----------------------------LHHVLGGALN------PNAAYLIIRGMKTLHL  408 (451)
Q Consensus       363 gdv~gG~Iv~~~eli~~lr~----------------------------~~~~~G~~ls------~~~a~l~lrgL~tl~~  408 (451)
                      .   +|++++++++..++-.                            .+.....+-+      ....|++..|-+.|..
T Consensus       280 ~---ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~  356 (954)
T PRK12566        280 H---AAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKR  356 (954)
T ss_pred             C---eeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHH
Confidence            5   8999988876544311                            0000000000      0113444445454544


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEecC
Q 013019          409 RVQQQNSTALRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~p~V~~V~yP  436 (451)
                      --++...++..+++.|.+ ++++.++-|
T Consensus       357 ia~~~~~~a~~l~~~l~~-~g~~~~~~~  383 (954)
T PRK12566        357 IAQRVHRLTAILAAGLEA-KGIKRLNRH  383 (954)
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCccccCC
Confidence            445566788899999988 676655433

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.90  E-value=3.2e-07  Score=96.63  Aligned_cols=225  Identities=13%  Similarity=0.105  Sum_probs=134.1

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchHHHHHHhhh-----
Q 013019          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP-----  271 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~~~l~~~l~-----  271 (451)
                      +.++...+|.++|+++.+.  +.+.+++||++|+..++.....       +| .+||.....|.+..........     
T Consensus        85 ~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~  164 (427)
T TIGR00508        85 FTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSM  164 (427)
T ss_pred             cCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccc
Confidence            4567777888889888754  5778888999999988875432       22 5788888888774221111100     


Q ss_pred             --cCC--c-EEEEeC-----------CCCHHHHHHhhcC--CCeEEEEEeCC-CCCccc----cccHHHHHHHHHhcCCE
Q 013019          272 --KMG--I-TATVID-----------PADMEGLEAALNN--NNVSLFFTESP-TNPFLR----CVDVKLVSDLCHKKGAI  328 (451)
Q Consensus       272 --~~G--i-~v~~vd-----------~~D~d~Le~ai~~--~~tklV~lesP-sNPtG~----v~DL~~IaelA~~~g~~  328 (451)
                        .++  . ....++           ..|++++++.+..  .++.+|++|.. .+-.|.    ...+++|.++|+++|++
T Consensus       165 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~l  244 (427)
T TIGR00508       165 HSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDIL  244 (427)
T ss_pred             cccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence              000  0 011111           0145677777742  24889999974 433332    24589999999999999


Q ss_pred             EEEecCCCC-CC-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH---hhC--CCccHHHHH
Q 013019          329 VCIDGTFAT-PL-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---VLG--GALNPNAAY  397 (451)
Q Consensus       329 lVVD~tfa~-~~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~---~~G--~~ls~~~a~  397 (451)
                      +|+||++.. +.     ...-.....||++  ++|.++|. -..++.+++++++.+.++....   ..+  ...+|..+.
T Consensus       245 lI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~gG-~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~a  321 (427)
T TIGR00508       245 LIADEIATGFGRTGKLFACEHAGVVPDILC--VGKALTGG-YMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACA  321 (427)
T ss_pred             EEEeccccCCCcCCccchhhhcCCCCCEEE--echhhhcC-cccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHH
Confidence            999999622 11     1111233467776  79999653 2346778888888887764210   111  123566666


Q ss_pred             HHHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEe
Q 013019          398 LIIRGMKTLHL--RVQQQNSTALRMAEILEA---HPKVLLLF  434 (451)
Q Consensus       398 l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~~---~p~V~~V~  434 (451)
                      .++..|+.+..  ..++..++..+|.+.|++   ++.+..|+
T Consensus       322 aa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vr  363 (427)
T TIGR00508       322 VAEASLAILLEGEWQKQVSAIENQLKRELSPLRKNPVVKDVR  363 (427)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhcCCCEEeEe
Confidence            65555554432  245555666667666654   34444443

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=7.1e-09  Score=104.91  Aligned_cols=180  Identities=17%  Similarity=0.162  Sum_probs=132.5

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHh
Q 013019          212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA  291 (451)
Q Consensus       212 ~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~a  291 (451)
                      +-.||+.||++.|.+++++++-|-+++..++.++.+.||.|++.+.+..+..    ..++...-.+.++..+|.++++..
T Consensus       141 HldlE~~iakF~G~E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq----~GlqlSRS~i~~Fkhndm~~lerl  216 (467)
T KOG1358|consen  141 HLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQ----KGLQLSRSTISYFKHNDMEDLERL  216 (467)
T ss_pred             ecccHHHHHHhhCCcceeeeccccchhhhcchhhhccCcEEEEehhhhHHHH----HHHhhhhheeEEecCCCHHHHHHh
Confidence            5579999999999999999999999999999999999999999876655433    334444556777788888888877


Q ss_pred             hcCCC------------eEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccc---------c-CCCc
Q 013019          292 LNNNN------------VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL---------S-LGAD  349 (451)
Q Consensus       292 i~~~~------------tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl---------~-~GaD  349 (451)
                      +.+..            -+.|++|...-++|.+.++.+|.++..++...+++|+++..+...+-.         . -..|
T Consensus       217 l~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iD  296 (467)
T KOG1358|consen  217 LPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDID  296 (467)
T ss_pred             ccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCcccee
Confidence            64421            357888988888999999999999999999999999998665433210         0 1268


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHH--HHHHHHhHhhCCCccHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLV--TQIRNLHHVLGGALNPNAAYLI  399 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli--~~lr~~~~~~G~~ls~~~a~l~  399 (451)
                      +++.|+.-.++..    ||+.+|+.-++  +++-.....+...+.|..+-.+
T Consensus       297 iv~~sm~~alas~----GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa  344 (467)
T KOG1358|consen  297 IVTASMETALASG----GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAA  344 (467)
T ss_pred             eeeeccccccccc----CceeecceeeEeeeeccccceeeeccCchhhhhhH
Confidence            9999999988865    58888754222  3333332333344555544333

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.88  E-value=2e-07  Score=99.20  Aligned_cols=228  Identities=13%  Similarity=0.058  Sum_probs=131.4

Q ss_pred             CCCchhHHHHHHHHHhhhCCC-----cEEEe-CCHHHHHHHHHHHHcc-CC-CeEEEcCCCCcch-HHHHHHh----h-h
Q 013019          206 RYGNPTTVVVEEKMSALEGAE-----STVIM-ASGMSASTVMLLALVP-AG-GHIVTTTDCYRKT-RIFIETV----L-P  271 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~gae-----~~vv~-sSG~aAi~~al~all~-~G-D~VIv~~~~Y~~t-~~~l~~~----l-~  271 (451)
                      .+.+|...+|.++|.++...+     ..+++ +||++|+..++..... +| .+||.....|.+. ...+...    . .
T Consensus       102 ~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~  181 (464)
T PRK06938        102 DLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKK  181 (464)
T ss_pred             ccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccc
Confidence            356788888888888876422     34455 5999999998875431 23 5688877777663 2222100    0 0


Q ss_pred             cCC---cEEEEeCCC-----------------CHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc----HHHHHHHH
Q 013019          272 KMG---ITATVIDPA-----------------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLC  322 (451)
Q Consensus       272 ~~G---i~v~~vd~~-----------------D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D----L~~IaelA  322 (451)
                      .++   -.+.+++..                 +++.+++.+++     .++.+|++|....-.|.+.+    +++|.++|
T Consensus       182 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc  261 (464)
T PRK06938        182 PLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRIT  261 (464)
T ss_pred             cCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            000   112223211                 25667777753     14899999976654455443    88999999


Q ss_pred             HhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHH
Q 013019          323 HKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAA  396 (451)
Q Consensus       323 ~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a  396 (451)
                      ++||+++|+||++..    +  +...-...-.||++  ++|.++|.  ...|.+++++++ +.+...........+|..+
T Consensus       262 ~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gKglggG--~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~  336 (464)
T PRK06938        262 EEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV--LSKAIGGS--LPLAVVVYREWL-DTWQPGAHAGTFRGNQMAM  336 (464)
T ss_pred             HHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE--eeccccCC--CceEEEeehhHh-hccCCCCCCCCCCcCHHHH
Confidence            999999999998532    1  11222223368888  68999863  456777777663 4332111111112356666


Q ss_pred             HHHHHhhHHHHHH--HHHHHHHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          397 YLIIRGMKTLHLR--VQQQNSTALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       397 ~l~lrgL~tl~~R--l~~~~~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      ..++..|+.+...  +++..+...+|.+.|    +++|.|..|+.-||
T Consensus       337 Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl  384 (464)
T PRK06938        337 AAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGL  384 (464)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccce
Confidence            6666555554321  233333333444433    34787777776654

>PRK07483 hypothetical protein; Provisional

Probab=98.88  E-value=2.2e-07  Score=98.42  Aligned_cols=229  Identities=15%  Similarity=0.183  Sum_probs=135.0

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcch-HHHHHHh-----h
Q 013019          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKT-RIFIETV-----L  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t-~~~l~~~-----l  270 (451)
                      +.++....|.++|+++..  .+.+.+++||++|+..++.....       +| .+||.....|.+. ...+...     -
T Consensus        70 ~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~  149 (443)
T PRK07483         70 FTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRR  149 (443)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccc
Confidence            567888899999999864  36778889999999998875432       23 4688877777663 2222100     0


Q ss_pred             hcCC---cEEEEeCC----CC--------------HHHHHHhhc---CCCeEEEEEeCCCC-Ccccccc----HHHHHHH
Q 013019          271 PKMG---ITATVIDP----AD--------------MEGLEAALN---NNNVSLFFTESPTN-PFLRCVD----VKLVSDL  321 (451)
Q Consensus       271 ~~~G---i~v~~vd~----~D--------------~d~Le~ai~---~~~tklV~lesPsN-PtG~v~D----L~~Iael  321 (451)
                      ..++   ..+..++.    .+              ++++++++.   .+++.+|++|.... -.|.+.+    +++|.++
T Consensus       150 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~l  229 (443)
T PRK07483        150 EPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREV  229 (443)
T ss_pred             cccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHH
Confidence            0011   11122221    11              256666553   23589999997653 2343432    8999999


Q ss_pred             HHhcCCEEEEecCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCC--Cc
Q 013019          322 CHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGG--AL  391 (451)
Q Consensus       322 A~~~g~~lVVD~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~--~l  391 (451)
                      |++||+++|+||++...      +..+-...-.||++  +.|.++|. -...|.+++++++.+.+.....  ..+.  .-
T Consensus       230 c~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~g  306 (443)
T PRK07483        230 CDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT--IAKGLGAG-YQPIGAVLASDRIYDAIADGSGFFQHGHTYLG  306 (443)
T ss_pred             HHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeee--ehhhhccC-ccccEEEEEcHHHHHHHhcCCCccccCCCCCC
Confidence            99999999999985321      11121223358887  68999864 1236777888888777653210  1121  23


Q ss_pred             cHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       392 s~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      +|..+..++..|+.+..  -+++..+....|.+.|    +++|.|..|+.-||
T Consensus       307 npl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Gl  359 (443)
T PRK07483        307 HATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGL  359 (443)
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeeccc
Confidence            56666655555554432  1333334444444444    45777777776654

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.87  E-value=2.6e-07  Score=96.68  Aligned_cols=230  Identities=16%  Similarity=0.155  Sum_probs=140.5

Q ss_pred             cCCCchhHHHHHHHHHhhhC-C--CcEEEeCCHHHHHHHHHHHHc----c---CC-CeEEEcCCCCcc-hHHH-------
Q 013019          205 GRYGNPTTVVVEEKMSALEG-A--ESTVIMASGMSASTVMLLALV----P---AG-GHIVTTTDCYRK-TRIF-------  265 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~g-a--e~~vv~sSG~aAi~~al~all----~---~G-D~VIv~~~~Y~~-t~~~-------  265 (451)
                      +-.+.| ..+|.++|+++.. .  +.+.+..||++|+.+++...+    .   +. .++|.-...|.+ |...       
T Consensus        83 ~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~  161 (449)
T COG0161          83 GFTHEP-AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPV  161 (449)
T ss_pred             ccCCch-HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCch
Confidence            334567 8889999999987 3  567777899999999886532    1   22 248887777765 2111       


Q ss_pred             --HHHhhhcCCcEEEEeCC-----------C------CHHHHHHhhcC---CCeEEEEEeCCCCC-cccccc----HHHH
Q 013019          266 --IETVLPKMGITATVIDP-----------A------DMEGLEAALNN---NNVSLFFTESPTNP-FLRCVD----VKLV  318 (451)
Q Consensus       266 --l~~~l~~~Gi~v~~vd~-----------~------D~d~Le~ai~~---~~tklV~lesPsNP-tG~v~D----L~~I  318 (451)
                        ........-..+.+++.           .      ..++|++.|.+   +++.++++|....- .|.+.+    ++++
T Consensus       162 ~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~v  241 (449)
T COG0161         162 ALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRV  241 (449)
T ss_pred             hhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHH
Confidence              11111111011111211           1      14567776654   45889999977665 454443    8999


Q ss_pred             HHHHHhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH-h----Hhh
Q 013019          319 SDLCHKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-H----HVL  387 (451)
Q Consensus       319 aelA~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-~----~~~  387 (451)
                      .++|++||+++|.||+...    +  +..+-...-.||++  ++|.+.+.- +..|.++.++++.+.+..- .    ...
T Consensus       242 r~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~GY-~Pl~a~l~~~~I~~~~~~~~~~~f~HG~  318 (449)
T COG0161         242 REICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGGY-LPLSAVLTSDRIYEAFSDGDAGAFMHGH  318 (449)
T ss_pred             HHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--ecccccccc-hhhHhHhhhHHHHHHHhcccCCeeccCC
Confidence            9999999999999998321    1  11121112248877  789888654 3455566677777776643 1    112


Q ss_pred             CCCccHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHH----cCCCeEEEecCCC
Q 013019          388 GGALNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAEILE----AHPKVLLLFITLL  438 (451)
Q Consensus       388 G~~ls~~~a~l~lrgL~tl~~R--l~~~~~nA~~Lae~L~----~~p~V~~V~yPgL  438 (451)
                      .-.-+|..|..++..|+-+...  +++..+....+.+.|+    +||.|..|+--|+
T Consensus       319 TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gl  375 (449)
T COG0161         319 TYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGL  375 (449)
T ss_pred             ccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccce
Confidence            2345788888888777766532  4455555555555554    4578877776554

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.86  E-value=1.1e-07  Score=100.30  Aligned_cols=217  Identities=17%  Similarity=0.195  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHcc-CCC-eEEEc-CCCCcchHHHHHHh-hhcCCc------EEEEe
Q 013019          212 TVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP-AGG-HIVTT-TDCYRKTRIFIETV-LPKMGI------TATVI  280 (451)
Q Consensus       212 ~~~Lee~LA~l~g-ae~~vv~sSG~aAi~~al~all~-~GD-~VIv~-~~~Y~~t~~~l~~~-l~~~Gi------~v~~v  280 (451)
                      ..+|.++|.++.. .+.+.+++||++|+..++..... .|. +|+.. ...|.+....+... ....++      .+..+
T Consensus        90 ~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~  169 (431)
T PRK06209         90 ELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTF  169 (431)
T ss_pred             HHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcccccc
Confidence            3467888888774 46778889999999998874321 343 45543 23332211111000 000111      12234


Q ss_pred             CCCCHHHHHHhhcC--CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc------cccccCCCcEEE
Q 013019          281 DPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLGADLVL  352 (451)
Q Consensus       281 d~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~------~~pl~~GaDiVv  352 (451)
                      +..|+++|+++++.  +++.+|++|......+....+++|.++|++||+++|+||++ +++.      +..+..-.|+++
T Consensus       170 ~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi~t  248 (431)
T PRK06209        170 RYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMI-TGFRWHMRGAQKLYGIVPDLSC  248 (431)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccCCcCcchhhHHhCCCcceee
Confidence            45688999988852  24789999876544333334899999999999999999986 3221      111122346644


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHH--HHHH--hH--hhCCC--ccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHH
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQ--IRNL--HH--VLGGA--LNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAE  422 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~--lr~~--~~--~~G~~--ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae  422 (451)
                        ++|.+++.  ..+|++++++++++.  +...  ..  ..+.+  .+|..+..++..|+.+..  .+++..++...+.+
T Consensus       249 --~gK~lggG--~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~  324 (431)
T PRK06209        249 --FGKALGNG--FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLAA  324 (431)
T ss_pred             --ehhhhcCC--cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence              79999873  357888898888775  2111  11  12323  345666555555555432  24444455555555


Q ss_pred             HHH----cCCCeEEE
Q 013019          423 ILE----AHPKVLLL  433 (451)
Q Consensus       423 ~L~----~~p~V~~V  433 (451)
                      .|+    +++.+..|
T Consensus       325 ~L~~~~~~~~~~~~v  339 (431)
T PRK06209        325 GVNEAAAEHGLQDHV  339 (431)
T ss_pred             HHHHHHHhCCCCeEE
Confidence            554    35544333

>PRK06917 hypothetical protein; Provisional

Probab=98.84  E-value=6.6e-07  Score=94.84  Aligned_cols=230  Identities=13%  Similarity=0.134  Sum_probs=134.8

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchH-HHHHHhh----
Q 013019          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTR-IFIETVL----  270 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~-~~l~~~l----  270 (451)
                      .+.++...+|.++|+++...  +...+++||++|+..++.....       +| .+|+.....|.+.. ..+...-    
T Consensus        70 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~  149 (447)
T PRK06917         70 QFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLR  149 (447)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccc
Confidence            45678888899999998753  4567779999999999875521       23 57888887776632 2221100    


Q ss_pred             -hcCC---cEEEEeC-----------------CCCHHHHHHhhcC---CCeEEEEEeCCCCCc-cccc-c---HHHHHHH
Q 013019          271 -PKMG---ITATVID-----------------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCV-D---VKLVSDL  321 (451)
Q Consensus       271 -~~~G---i~v~~vd-----------------~~D~d~Le~ai~~---~~tklV~lesPsNPt-G~v~-D---L~~Iael  321 (451)
                       ..++   -.+..++                 ..+++.+++.++.   +++.+|++|....-. |.+. +   +++|.++
T Consensus       150 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~l  229 (447)
T PRK06917        150 RQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEI  229 (447)
T ss_pred             cccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHH
Confidence             0000   0011111                 0124566777652   248999999655322 3333 2   7899999


Q ss_pred             HHhcCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-H-hhC--CCc
Q 013019          322 CHKKGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-H-VLG--GAL  391 (451)
Q Consensus       322 A~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-~-~~G--~~l  391 (451)
                      |+++|+++|+||++..    +  +.+.-...-.|+++  ++|.+++. -...|++++++++++.+.... . ..+  ...
T Consensus       230 c~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~--~gK~l~~G-~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~g  306 (447)
T PRK06917        230 CDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMT--LGKGLGAG-YTPIAATVVSDRVMEPILRGSRSIMSGHTLSA  306 (447)
T ss_pred             HHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEE--eeehhccC-CcceEEEEEcHHHHHHHhccCcccccccCCCC
Confidence            9999999999998532    1  11121222358766  69999863 123677888888887765321 1 112  124


Q ss_pred             cHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeEEEecCCC
Q 013019          392 NPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILE----AHPKVLLLFITLL  438 (451)
Q Consensus       392 s~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~~V~yPgL  438 (451)
                      +|..+..++..|+.+..  .+++..+..++|.+.|+    ++|.|..|+.-|+
T Consensus       307 npl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl  359 (447)
T PRK06917        307 NPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGL  359 (447)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecce
Confidence            66666666555555532  23444444444444443    4677777665443

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.84  E-value=2.5e-07  Score=92.17  Aligned_cols=214  Identities=18%  Similarity=0.175  Sum_probs=136.8

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc--------CCC--eEEEcCCCCcc-hHHH---------HHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP--------AGG--HIVTTTDCYRK-TRIF---------IET  268 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~--------~GD--~VIv~~~~Y~~-t~~~---------l~~  268 (451)
                      |....++++.+.+++|.+..+-+++|.+|..+++....+        |.|  .|+.....|.+ |...         .+.
T Consensus       100 nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~  179 (427)
T KOG1402|consen  100 NDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDG  179 (427)
T ss_pred             hhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhc
Confidence            345567899999999999999999999999998764432        223  34444455543 2211         111


Q ss_pred             hhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCC----C--
Q 013019          269 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----P--  338 (451)
Q Consensus       269 ~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~----~--  338 (451)
                      +-....-.+..++..|.++|+.+++..+++.+++|-....-|.+.+    ++++.++|++|++++|.||.+..    +  
T Consensus       180 fgp~~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~  259 (427)
T KOG1402|consen  180 FGPFLPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKL  259 (427)
T ss_pred             cCCCCCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcE
Confidence            1111112255677789999999998878999999988888888765    89999999999999999998632    1  


Q ss_pred             CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013019          339 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL  418 (451)
Q Consensus       339 ~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~  418 (451)
                      +..+--..-.|+|+  +.|.++|.- .....+..+++++-.++...+...-.-+|+.+..++..|+-+.+  ++..+++.
T Consensus       260 la~d~env~PDivi--lgKalSGG~-~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~e--ekL~era~  334 (427)
T KOG1402|consen  260 LACDYENVRPDIVI--LGKALSGGV-YPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVE--EKLVERAA  334 (427)
T ss_pred             EEeehhhcCCCeEE--EeccccCCe-eeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            11111122458888  789998764 22344456666665555433222222356666666666665543  33444444


Q ss_pred             HH----HHHHHcC
Q 013019          419 RM----AEILEAH  427 (451)
Q Consensus       419 ~L----ae~L~~~  427 (451)
                      .|    ...|.+.
T Consensus       335 ~lG~~l~~~L~~l  347 (427)
T KOG1402|consen  335 KLGEILRDQLNKL  347 (427)
T ss_pred             HHHHHHHHHHHhc
Confidence            44    4445444

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.83  E-value=4.7e-07  Score=92.02  Aligned_cols=211  Identities=17%  Similarity=0.147  Sum_probs=128.6

Q ss_pred             HHHHHHHHHhh-hCCC---------cEEEeCCHHHHHHHHHHH--HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          212 TVVVEEKMSAL-EGAE---------STVIMASGMSASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       212 ~~~Lee~LA~l-~gae---------~~vv~sSG~aAi~~al~a--ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      ...+.+.++++ +|.+         ..+-+.+|+.|+..+..-  ...+...|.+++|.|+....+    +...|.++..
T Consensus        71 ~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~I----f~~aGl~v~~  146 (396)
T COG1448          71 LPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAI----FEAAGLEVET  146 (396)
T ss_pred             cHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHH----HHhcCCceee
Confidence            44555666554 4532         234467888888776543  344556799999999986644    4556777755


Q ss_pred             eC---C----CCHHHHHHhhcCC-CeEEEEE-eCCCCCcccccc---HHHHHHHHHhcCCEEEEecCC---CCCCccccc
Q 013019          280 ID---P----ADMEGLEAALNNN-NVSLFFT-ESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF---ATPLNQKAL  344 (451)
Q Consensus       280 vd---~----~D~d~Le~ai~~~-~tklV~l-esPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tf---a~~~~~~pl  344 (451)
                      ++   .    .|.+.+.+.++.- ...+|++ ..-+||||.-.+   +++|.++.++.|.+-++|-+|   +.++..+..
T Consensus       147 Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~  226 (396)
T COG1448         147 YPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAY  226 (396)
T ss_pred             eeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHH
Confidence            43   2    3566665555421 1234444 456799998764   678888999999999999995   444433321


Q ss_pred             ------cCCC-cEEEECCcccCCccccceeEEEEe--CHHHHHHH----HHHhHhhCCCccHHHHHHHH----------H
Q 013019          345 ------SLGA-DLVLHSATKFIGGHNDVLAGSISG--SGKLVTQI----RNLHHVLGGALNPNAAYLII----------R  401 (451)
Q Consensus       345 ------~~Ga-DiVv~S~SK~l~G~gdv~gG~Iv~--~~eli~~l----r~~~~~~G~~ls~~~a~l~l----------r  401 (451)
                            ..+. -+|+.|+||.|+..+.+.|++.+.  +++..+++    +...+..-.+++...+.++.          .
T Consensus       227 ~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~  306 (396)
T COG1448         227 ALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAE  306 (396)
T ss_pred             HHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHH
Confidence                  1122 488899999999988777766543  44444443    33333333334344333221          1


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHc
Q 013019          402 GMKTLHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       402 gL~tl~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      -.+.+...++++.+.+..+.+.|++
T Consensus       307 W~~El~~Mr~Ri~~mR~~lv~~L~~  331 (396)
T COG1448         307 WEQELEEMRQRILEMRQALVDALKA  331 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2233444456666777888888877

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.80  E-value=7.2e-07  Score=94.88  Aligned_cols=227  Identities=12%  Similarity=0.065  Sum_probs=129.3

Q ss_pred             CCchhHHHHHHHHHhhhCCC----cEEEe-CCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhh---------
Q 013019          207 YGNPTTVVVEEKMSALEGAE----STVIM-ASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL---------  270 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae----~~vv~-sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l---------  270 (451)
                      +.++...+|.++|.++.+..    ..+++ +||++|+..++....  ...++||.....|.+.....-.+-         
T Consensus        98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~  177 (459)
T PRK06931         98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAV  177 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCC
Confidence            56788888999999887532    24455 799999999887532  234568888887777432211110         


Q ss_pred             hcCCcEEEEeCCC-------------CHHHH----HHhhc-----CCCeEEEEEeCCCCCcccccc----HHHHHHHHHh
Q 013019          271 PKMGITATVIDPA-------------DMEGL----EAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (451)
Q Consensus       271 ~~~Gi~v~~vd~~-------------D~d~L----e~ai~-----~~~tklV~lesPsNPtG~v~D----L~~IaelA~~  324 (451)
                      ......+.+++..             +.+.+    ++.++     ..++.+|++|....-.|.+.+    +++|.++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~  257 (459)
T PRK06931        178 NGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQK  257 (459)
T ss_pred             CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence            0001112233221             12222    33332     124889999977655565443    8999999999


Q ss_pred             cCCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHH
Q 013019          325 KGAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL  398 (451)
Q Consensus       325 ~g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l  398 (451)
                      ||+++|+||++..    +  +...-...-.||++  +.|.++|.  ...|++++++++ +.+...........+|..+..
T Consensus       258 ~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~gG--~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aa  332 (459)
T PRK06931        258 HGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGGG--LPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMAT  332 (459)
T ss_pred             cCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccCC--cceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHH
Confidence            9999999998532    1  11222223368887  68999874  345667776653 443211111111246776666


Q ss_pred             HHHhhHHHHHH--HHHHHHHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          399 IIRGMKTLHLR--VQQQNSTALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       399 ~lrgL~tl~~R--l~~~~~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      ++..|+.+...  +++..+...+|.+.|    +++|.|..|+.-||
T Consensus       333 ala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl  378 (459)
T PRK06931        333 GLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGL  378 (459)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCce
Confidence            66666554321  233333333333333    45787888876665

>PRK06148 hypothetical protein; Provisional

Probab=98.79  E-value=9.2e-07  Score=102.36  Aligned_cols=230  Identities=15%  Similarity=0.107  Sum_probs=137.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc-C-CCeEEEcCCCCcch-HHHHHH----hhhcCC-
Q 013019          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-A-GGHIVTTTDCYRKT-RIFIET----VLPKMG-  274 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~-~-GD~VIv~~~~Y~~t-~~~l~~----~l~~~G-  274 (451)
                      +++.+|...+|.++|+++...  +.+.+++||++|+..++..... . ..+||+.+..|.+. ...+..    .-...+ 
T Consensus       658 ~~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~  737 (1013)
T PRK06148        658 TRYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGK  737 (1013)
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCC
Confidence            467888889999999998753  5677889999999998875432 2 35688877777663 211110    000011 


Q ss_pred             ---cEEEEe--------CCC--C-------HHHHHHhhc-----CCCeEEEEEeCCCCCcccccc----HHHHHHHHHhc
Q 013019          275 ---ITATVI--------DPA--D-------MEGLEAALN-----NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  325 (451)
Q Consensus       275 ---i~v~~v--------d~~--D-------~d~Le~ai~-----~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~  325 (451)
                         -.+..+        +..  +       .+.+++.++     .+++.+|++|....-.|.+..    +++|.++|+++
T Consensus       738 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~  817 (1013)
T PRK06148        738 GRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA  817 (1013)
T ss_pred             CCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh
Confidence               011111        111  1       134555443     135899999987765666554    89999999999


Q ss_pred             CCEEEEecCCCC----C---CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhh-CCCccHHHHH
Q 013019          326 GAIVCIDGTFAT----P---LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL-GGALNPNAAY  397 (451)
Q Consensus       326 g~~lVVD~tfa~----~---~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~-G~~ls~~~a~  397 (451)
                      |+++|+||++..    +   +.++-...-.||++  +.|.+++.  .-.|.+++++++.+.+....... ....+|..+.
T Consensus       818 g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lggG--~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~a  893 (1013)
T PRK06148        818 GGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGNG--HPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCA  893 (1013)
T ss_pred             CCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccCC--cceEEEEEcHHHHhhccCCCccccCCCCCHHHHH
Confidence            999999998532    1   11221222358877  69999864  35788888888887764321111 1123677666


Q ss_pred             HHHHhhHHHHHH--HHHHHHHHHHHHHHH----HcCCCeEEEecCCC
Q 013019          398 LIIRGMKTLHLR--VQQQNSTALRMAEIL----EAHPKVLLLFITLL  438 (451)
Q Consensus       398 l~lrgL~tl~~R--l~~~~~nA~~Lae~L----~~~p~V~~V~yPgL  438 (451)
                      .++..|+.+...  +++..+....|.+.|    +++|.|..|+.-||
T Consensus       894 aa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl  940 (1013)
T PRK06148        894 IGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGL  940 (1013)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeece
Confidence            666666655321  233334444444444    34676666655443

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.79  E-value=9.5e-07  Score=99.58  Aligned_cols=230  Identities=13%  Similarity=0.113  Sum_probs=134.9

Q ss_pred             CCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHcc-----C----------------CCeEEEcCCCCcc
Q 013019          206 RYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP-----A----------------GGHIVTTTDCYRK  261 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~-----~----------------GD~VIv~~~~Y~~  261 (451)
                      .+.++...+|.++|.++.+.   ..+.+.+||++|+..++....+     .                ..+||.-...|.+
T Consensus       405 ~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG  484 (817)
T PLN02974        405 ENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHG  484 (817)
T ss_pred             ccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCC
Confidence            34677778888888886652   4577778999999988764421     1                2358888888866


Q ss_pred             -hHHHHHHh--------h-hc----CCcEE----EE---------eCCC-------------------C-----------
Q 013019          262 -TRIFIETV--------L-PK----MGITA----TV---------IDPA-------------------D-----------  284 (451)
Q Consensus       262 -t~~~l~~~--------l-~~----~Gi~v----~~---------vd~~-------------------D-----------  284 (451)
                       |...+...        + ..    .+..+    ..         ++..                   |           
T Consensus       485 ~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~  564 (817)
T PLN02974        485 DTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKA  564 (817)
T ss_pred             CCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHH
Confidence             33222110        0 00    00000    00         0000                   0           


Q ss_pred             -HHHHHHhhc-------CCCeEEEEEeCC-CCCccccc-c---HHHHHHHHHhcCCEEEEecCCCCC------Ccccccc
Q 013019          285 -MEGLEAALN-------NNNVSLFFTESP-TNPFLRCV-D---VKLVSDLCHKKGAIVCIDGTFATP------LNQKALS  345 (451)
Q Consensus       285 -~d~Le~ai~-------~~~tklV~lesP-sNPtG~v~-D---L~~IaelA~~~g~~lVVD~tfa~~------~~~~pl~  345 (451)
                       .+.+++.|+       .+++.+|++|-. ..-.|.+. +   +++|.++|++||+++|.||++...      +..+-+.
T Consensus       565 ~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~g  644 (817)
T PLN02974        565 YRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLG  644 (817)
T ss_pred             HHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcC
Confidence             144666664       235899999974 44445544 2   789999999999999999996432      1122222


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH------hHhhCCCccHHHHHHHHHhhHHHHHH--HHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL------HHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNSTA  417 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~------~~~~G~~ls~~~a~l~lrgL~tl~~R--l~~~~~nA  417 (451)
                      .-.||++  +.|.++|.- +-.|.+++++++.+.+..-      ........+|..+..++..|+.+...  .+...+++
T Consensus       645 v~PDIi~--~gKgLtgG~-~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~  721 (817)
T PLN02974        645 CKPDIAC--YAKLLTGGL-VPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPG  721 (817)
T ss_pred             CCCCEEe--ecccccCCC-CccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            2358888  789998642 3467788888888876421      11112234677777776666655431  11222222


Q ss_pred             --------HHHHHHHHcCCCeEEEecCCC
Q 013019          418 --------LRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       418 --------~~Lae~L~~~p~V~~V~yPgL  438 (451)
                              ..+.+.|+++|.|..|+.-|+
T Consensus       722 ~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl  750 (817)
T PLN02974        722 SRLRELWDEELVRAISSLPNVERVVSLGT  750 (817)
T ss_pred             HHHHHHHHHHHHHHHhhCCCeeEEEeeee
Confidence                    233345567898888876654

>PLN02452 phosphoserine transaminase

Probab=98.72  E-value=4.2e-07  Score=93.91  Aligned_cols=205  Identities=11%  Similarity=0.017  Sum_probs=127.6

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe---C-
Q 013019          210 PTTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI---D-  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae---~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v---d-  281 (451)
                      ...++.++.|.++++.+   +++++ ++|+.++.++++.++++||++++....+.+.+  +.+.++++|......   + 
T Consensus        52 ~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r--~~~~a~~~g~~~~~~~~~~~  129 (365)
T PLN02452         52 SIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKK--AAKEAKKYCKTNVIASGKDE  129 (365)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHH--HHHHHHHhCCCcEEEecCCC
Confidence            34566788889999863   34444 68889999999999999998777665444422  224456666543332   1 


Q ss_pred             ----CCCHHHHHHhhcCCCeEEEEEeCCCCCcccc-ccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECC
Q 013019          282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSA  355 (451)
Q Consensus       282 ----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v-~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~  355 (451)
                          ..++++++  ..+ +.+.|+++.-.-.+|.. .|++++.      ++++|+|.+...+ ...+.-++|+|  +.|.
T Consensus       130 ~~~~~~~~~~~~--~~~-~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~--~~sa  198 (365)
T PLN02452        130 KYTKIPSVSEWE--LTP-DAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVI--YAGA  198 (365)
T ss_pred             CCCCCCChHHcC--CCC-CCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcCEE--EEec
Confidence                23455542  222 36777774433456773 6776664      3899999985432 12223345554  4699


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHhH-------hh-----CCCccHHHHHHHHHhhHH------HHHHHHHHHHHH
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VL-----GGALNPNAAYLIIRGMKT------LHLRVQQQNSTA  417 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-------~~-----G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA  417 (451)
                      .|.++.+|   .|+++.++++++++.....       ..     -.+++....+.+...|++      +..+.+++.+.+
T Consensus       199 qK~lGP~G---l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a  275 (365)
T PLN02452        199 QKNVGPSG---VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKA  275 (365)
T ss_pred             ccccCCCC---eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99998666   7888899988876542110       00     023333444444444444      345567778889


Q ss_pred             HHHHHHHHcCCCe
Q 013019          418 LRMAEILEAHPKV  430 (451)
Q Consensus       418 ~~Lae~L~~~p~V  430 (451)
                      +.+.++|++.+++
T Consensus       276 ~~l~~~l~~~~G~  288 (365)
T PLN02452        276 DLLYDAIDESNGF  288 (365)
T ss_pred             HHHHHHHHhCCCc
Confidence            9999999988765

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.72  E-value=4.1e-07  Score=91.65  Aligned_cols=214  Identities=19%  Similarity=0.146  Sum_probs=136.4

Q ss_pred             CchhHHHHHHH----HHhhhCC---CcEE--EeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHH--HHHHhhhcCCcE
Q 013019          208 GNPTTVVVEEK----MSALEGA---ESTV--IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRI--FIETVLPKMGIT  276 (451)
Q Consensus       208 ~npt~~~Lee~----LA~l~ga---e~~v--v~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~--~l~~~l~~~Gi~  276 (451)
                      ||...+++|..    --+.++.   .+.|  -.=||+-|++.+..++++|+|+|.--+.-.|+...  +.... ++.-..
T Consensus        80 Gne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~-kkISa~  158 (477)
T KOG2467|consen   80 GNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPT-KKISAT  158 (477)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCC-ceeeee
Confidence            67777766433    2234443   2333  33499999999999999999999988877766321  11111 111111


Q ss_pred             EEEe-------C----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCC-----CCc
Q 013019          277 ATVI-------D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-----PLN  340 (451)
Q Consensus       277 v~~v-------d----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~-----~~~  340 (451)
                      -.++       |    ..|.|.||+....-++|+|+.-.  +-.-+.+|.+++.+||.+.|+.++.|-++.+     .+.
T Consensus       159 SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~--SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vi  236 (477)
T KOG2467|consen  159 SIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGT--SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVI  236 (477)
T ss_pred             eeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEecc--ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccC
Confidence            1111       1    13778888766555678888743  3466888999999999999999999999644     455


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCH---------------HHHHHHHHHh-H-hhCCCcc-HHHHH-HHHH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLH-H-VLGGALN-PNAAY-LIIR  401 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~---------------eli~~lr~~~-~-~~G~~ls-~~~a~-l~lr  401 (451)
                      ..|+++ +|||..+.||.|-|+.   ||+|.-++               ++-+++...- . ..|+.-+ ...+. .++.
T Consensus       237 psPFey-~DiVTTTTHKsLRGPR---g~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALk  312 (477)
T KOG2467|consen  237 PSPFEY-CDIVTTTTHKSLRGPR---GAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALK  312 (477)
T ss_pred             CCcccc-cceeeccccccccCCc---ceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHH
Confidence            678887 9999999999999995   88887443               1223333221 1 1122111 11111 1122


Q ss_pred             h--hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          402 G--MKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       402 g--L~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      .  -..+..-.++..+|++.|++.|.++.
T Consensus       313 Qa~tpefk~Yq~qV~~Nakala~~l~~~G  341 (477)
T KOG2467|consen  313 QAMTPEFKEYQKQVLKNAKALASALISRG  341 (477)
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2  23455667788899999999998763

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=98.71  E-value=2.9e-06  Score=86.66  Aligned_cols=198  Identities=14%  Similarity=0.168  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHH-HHHHHHH-HHHcc--C----------CCeEEEcCCCCcchHHHHHHhhhcC
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIMASGM-SASTVML-LALVP--A----------GGHIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~sSG~-aAi~~al-~all~--~----------GD~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      ....++++.+++++|.  ++.++.++.+ .-++-++ .+++.  .          .=+.+++-|.|...+.    +++.+
T Consensus        69 ~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFa----i~E~~  144 (425)
T PF12897_consen   69 DGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFA----ITEHF  144 (425)
T ss_dssp             S--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHH----HHHHC
T ss_pred             CChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHH----HHHhh
Confidence            4467899999999997  5666666555 2222222 12211  1          1269999999987764    45678


Q ss_pred             CcEEEEeC----CCCHHHHHHhhc-CCCeEEEEEeCC--CCCccccccHHHHHHHH----HhcCCEEEEecCCCCCCc--
Q 013019          274 GITATVID----PADMEGLEAALN-NNNVSLFFTESP--TNPFLRCVDVKLVSDLC----HKKGAIVCIDGTFATPLN--  340 (451)
Q Consensus       274 Gi~v~~vd----~~D~d~Le~ai~-~~~tklV~lesP--sNPtG~v~DL~~IaelA----~~~g~~lVVD~tfa~~~~--  340 (451)
                      |++...|+    ..|.|.+|+.+. +..+|.||+ .|  +||+|.++.-+-+.++|    ...+..++-||+|+.--+  
T Consensus       145 Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWc-VP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~  223 (425)
T PF12897_consen  145 GIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWC-VPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYD  223 (425)
T ss_dssp             T-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE--SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSS
T ss_pred             CcEEEecCCCCCCCCHHHHHHHHhcCCccceEEe-CCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccc
Confidence            99887775    458999999884 335899987 56  59999999766555555    357899999999865321  


Q ss_pred             c-------ccc----cCC---CcEEEECCccc-CCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHH---HHHh
Q 013019          341 Q-------KAL----SLG---ADLVLHSATKF-IGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL---IIRG  402 (451)
Q Consensus       341 ~-------~pl----~~G---aDiVv~S~SK~-l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l---~lrg  402 (451)
                      .       +-+    +.|   --++..|+||. +.|.|   .+++.++++-++.+++..........-.++..   .++.
T Consensus       224 ~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaG---va~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d  300 (425)
T PF12897_consen  224 EEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAG---VAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKD  300 (425)
T ss_dssp             SSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS----EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHS
T ss_pred             cccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcc---eeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcC
Confidence            1       111    112   23778899995 55665   78889998888887766555444333333322   2233


Q ss_pred             hH-HHHHHHHHHHH
Q 013019          403 MK-TLHLRVQQQNS  415 (451)
Q Consensus       403 L~-tl~~Rl~~~~~  415 (451)
                      .+ .+...|++|.+
T Consensus       301 ~~gGv~aHM~kHa~  314 (425)
T PF12897_consen  301 AEGGVRAHMRKHAA  314 (425)
T ss_dssp             HHTHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHH
Confidence            34 44455666544

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.68  E-value=1.5e-06  Score=88.85  Aligned_cols=213  Identities=20%  Similarity=0.225  Sum_probs=137.2

Q ss_pred             HHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHHccCC--C------eEEEcCCCCcc-hHHHHHHh-hhcCCc---
Q 013019          212 TVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVPAG--G------HIVTTTDCYRK-TRIFIETV-LPKMGI---  275 (451)
Q Consensus       212 ~~~Lee~LA~l~---gae~~vv~sSG~aAi~~al~all~~G--D------~VIv~~~~Y~~-t~~~l~~~-l~~~Gi---  275 (451)
                      ...|+++|.+..   .++.+.++.||++|+.++|....+..  +      .+|....+|.+ +...+... -..++.   
T Consensus       100 av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~  179 (433)
T KOG1401|consen  100 AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFD  179 (433)
T ss_pred             HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCC
Confidence            556788888877   46788899999999999987554321  2      38888777765 44444311 112222   


Q ss_pred             ----EEEEeCCCCHHHHHHhhcCCC--eEEEEEeCCCCCccccc-c---HHHHHHHHHhcCCEEEEecCCCCC------C
Q 013019          276 ----TATVIDPADMEGLEAALNNNN--VSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDGTFATP------L  339 (451)
Q Consensus       276 ----~v~~vd~~D~d~Le~ai~~~~--tklV~lesPsNPtG~v~-D---L~~IaelA~~~g~~lVVD~tfa~~------~  339 (451)
                          ++......|..++++.++.++  +.+|++|-...--|... |   +..|.++|+++|+++|.||.+...      .
T Consensus       180 p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~  259 (433)
T KOG1401|consen  180 PIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW  259 (433)
T ss_pred             CCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH
Confidence                233344568999999997653  78999997775555443 2   778999999999999999996431      2


Q ss_pred             ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-hhCC--CccHHHHHHHHHhhHHHH--HHHHHHH
Q 013019          340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLH--LRVQQQN  414 (451)
Q Consensus       340 ~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-~~G~--~ls~~~a~l~lrgL~tl~--~Rl~~~~  414 (451)
                      .+..+..-.||.+  +.|.++|.  +..|+..+++++.+.+..-.. +.|.  .-+|+.+......|+++.  ..+++..
T Consensus       260 a~e~~~~~PDI~t--~aK~L~gG--lPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs  335 (433)
T KOG1401|consen  260 AQEYFGVTPDITT--VAKPLGGG--LPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVS  335 (433)
T ss_pred             HHHHhCcCCccee--ehhhccCC--ceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHH
Confidence            2332333347665  79999876  578888899888887764332 1232  236777766666666653  2334444


Q ss_pred             HHH----HHHHHHHHcCC
Q 013019          415 STA----LRMAEILEAHP  428 (451)
Q Consensus       415 ~nA----~~Lae~L~~~p  428 (451)
                      +..    +.+-+++.+.+
T Consensus       336 ~~~k~L~~~l~e~~~~~~  353 (433)
T KOG1401|consen  336 KIGKELRKLLDEYLKKTP  353 (433)
T ss_pred             HHHHHHHHHHHHHhccCC
Confidence            433    44444554444

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.65  E-value=2.1e-06  Score=90.66  Aligned_cols=162  Identities=13%  Similarity=0.155  Sum_probs=98.7

Q ss_pred             CCCchhHHHHHHHHHhhh---CCCcEEEeCCHHHHHHHHHHHHcc--------C------CCeEEEcCCCCcchH-HHHH
Q 013019          206 RYGNPTTVVVEEKMSALE---GAESTVIMASGMSASTVMLLALVP--------A------GGHIVTTTDCYRKTR-IFIE  267 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~---gae~~vv~sSG~aAi~~al~all~--------~------GD~VIv~~~~Y~~t~-~~l~  267 (451)
                      .+.++...++-++|+++.   +.+.+.+++||++|+.+++.....        .      +.+||.....|.+.. ..+.
T Consensus        81 ~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als  160 (431)
T TIGR03251        81 DVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLS  160 (431)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhh
Confidence            345666777777888774   236678889999999998875431        1      367888888887632 2221


Q ss_pred             Hh----hh-cCC-------cEEEEe---------C------CCCHHHHHHhhc--CCCeEEEEEeCCCCCccccc----c
Q 013019          268 TV----LP-KMG-------ITATVI---------D------PADMEGLEAALN--NNNVSLFFTESPTNPFLRCV----D  314 (451)
Q Consensus       268 ~~----l~-~~G-------i~v~~v---------d------~~D~d~Le~ai~--~~~tklV~lesPsNPtG~v~----D  314 (451)
                      ..    .. .+.       +.....         +      ..+++++++.+.  .+++.+|++|......|.+.    -
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~  240 (431)
T TIGR03251       161 LTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEF  240 (431)
T ss_pred             ccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHH
Confidence            00    00 000       000000         0      012445555663  23589999997776667654    3


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCC-C-----ccccccCCCcEEEECCcccCCccccceeEEEEeCH
Q 013019          315 VKLVSDLCHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG  374 (451)
Q Consensus       315 L~~IaelA~~~g~~lVVD~tfa~~-~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~  374 (451)
                      +++|.++|++||+++|+||++... .     ..+....-.|+++  ++|.+  +   .+|++.+++
T Consensus       241 l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~--~---~~g~~~~~~  299 (431)
T TIGR03251       241 LRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKT--Q---VCGIMAGRR  299 (431)
T ss_pred             HHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccC--c---cceEEecch
Confidence            899999999999999999996521 1     1122233468887  67876  2   367776553

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=98.61  E-value=1.3e-06  Score=88.87  Aligned_cols=229  Identities=17%  Similarity=0.162  Sum_probs=135.6

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH-ccCC-CeEEEcCCCCcchHH-HHHHh-hh--cC--
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAG-GHIVTTTDCYRKTRI-FIETV-LP--KM--  273 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~al-l~~G-D~VIv~~~~Y~~t~~-~l~~~-l~--~~--  273 (451)
                      ..-|-+|...+|.++|++++-.  ..+.+++||++|+.++++.. +-.| -+||.-+..|.+.-. .+... +.  +.  
T Consensus        86 t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~  165 (442)
T KOG1404|consen   86 TSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNF  165 (442)
T ss_pred             eccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccC
Confidence            3445677788888888887754  45677789999999887643 2222 367777777766321 11100 10  11  


Q ss_pred             -Cc--EEEEeCCC---------C---------HHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHHHHhc
Q 013019          274 -GI--TATVIDPA---------D---------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  325 (451)
Q Consensus       274 -Gi--~v~~vd~~---------D---------~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~  325 (451)
                       +.  -+......         +         .+++++.+.   +..+...+.|+...-.|.+..    ++++.++|+++
T Consensus       166 ~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~  245 (442)
T KOG1404|consen  166 PGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKR  245 (442)
T ss_pred             CCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHc
Confidence             01  01111100         1         133444442   234788899999877777653    89999999999


Q ss_pred             CCEEEEecCCCC------CCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-HhhCCCccHHHHHH
Q 013019          326 GAIVCIDGTFAT------PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVLGGALNPNAAYL  398 (451)
Q Consensus       326 g~~lVVD~tfa~------~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-~~~G~~ls~~~a~l  398 (451)
                      |.++|.||++..      .+..+....-.|||  ++.|.++..  .-.|.+++.+|+.+-+.+-. ....-.-+|..+..
T Consensus       246 Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIv--TmAKgiGnG--~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~av  321 (442)
T KOG1404|consen  246 GGLFIADEVQTGFGRTGHMWGFESHGVVPDIV--TMAKGIGNG--FPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAV  321 (442)
T ss_pred             CCEEEehhhhhccccccccccccccCCCccHH--HHHhhccCC--CcceeeecCHHHHHHHHhccccccccCCCchhHHH
Confidence            999999998532      12222111113554  599999865  35677788888877766543 22222335666666


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH--------cCCCeEEEecCCC
Q 013019          399 IIRGMKTLHLRVQQQNSTALRMAEILE--------AHPKVLLLFITLL  438 (451)
Q Consensus       399 ~lrgL~tl~~Rl~~~~~nA~~Lae~L~--------~~p~V~~V~yPgL  438 (451)
                      .+.-|+-+..  ++..+|+..+..+|.        +||.|-.|+--||
T Consensus       322 g~aVL~Vike--e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GL  367 (442)
T KOG1404|consen  322 GLAVLKVIKE--ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGL  367 (442)
T ss_pred             HHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHhhcCCceeeccccee
Confidence            5555555443  344555555555443        4788877776665

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=98.59  E-value=3.9e-06  Score=86.53  Aligned_cols=200  Identities=13%  Similarity=0.083  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHHccCCCeEE-EcCCCCcchHHHHHHhhhcCCcEEEEeC-----
Q 013019          212 TVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIV-TTTDCYRKTRIFIETVLPKMGITATVID-----  281 (451)
Q Consensus       212 ~~~Lee~LA~l~gae---~~vv~-sSG~aAi~~al~all~~GD~VI-v~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-----  281 (451)
                      ..+.++.|.++++.+   +.+++ ++|+.++.++.+.++.+||+++ +....+.+.+ +. ..++++| ++..+.     
T Consensus        51 ~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r-~~-~ea~~~g-~v~~~~~~~~~  127 (364)
T PRK12462         51 LAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRK-AI-GEASRVA-AMRVVWDGAAS  127 (364)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHH-HH-HHHHhcC-CceEecCcCCC
Confidence            456688888888862   34444 4577999999999999999654 3333333322 22 3455555 343332     


Q ss_pred             ----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCC---CCCccccccCCCcEEEEC
Q 013019          282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA---TPLNQKALSLGADLVLHS  354 (451)
Q Consensus       282 ----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa---~~~~~~pl~~GaDiVv~S  354 (451)
                          ..+++++  .+.+ +.+.|+++.-.-.+|...+     ++.+.+++++|+|.+-.   .++..+  ++  |+++.+
T Consensus       128 ~~~~~p~~~~~--~~~~-d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~--~~--dvi~ag  195 (364)
T PRK12462        128 GYRTLPSLAEL--DWDA-RAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVE--AY--GMVYAH  195 (364)
T ss_pred             CCCcCCCHHHh--ccCC-CCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChH--Hc--cEEEee
Confidence                1234444  2333 3677776433334566664     33334689999999832   233222  33  999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHh-------H-----hhCCCccHHHHHHHHHhhHHH-------HHHHHHHHH
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------H-----VLGGALNPNAAYLIIRGMKTL-------HLRVQQQNS  415 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-------~-----~~G~~ls~~~a~l~lrgL~tl-------~~Rl~~~~~  415 (451)
                      ..|.++.+|   .++++.+++++++.....       .     .+-.+++.+..|++...++++       ..+.+++.+
T Consensus       196 sQKnlgP~G---ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~  272 (364)
T PRK12462        196 AQKNLGPAG---VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINAR  272 (364)
T ss_pred             ccccCCCCc---eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999665   678888998887654311       0     011233444445444444443       345677888


Q ss_pred             HHHHHHHHHHcCCC
Q 013019          416 TALRMAEILEAHPK  429 (451)
Q Consensus       416 nA~~Lae~L~~~p~  429 (451)
                      .++.+.+++.+.++
T Consensus       273 ka~~ly~~id~~~~  286 (364)
T PRK12462        273 KAAMLYATLDALNE  286 (364)
T ss_pred             HHHHHHHHHHhCCC
Confidence            89999999998874

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.57  E-value=2.6e-06  Score=90.65  Aligned_cols=153  Identities=14%  Similarity=0.108  Sum_probs=95.2

Q ss_pred             CCchhHHHHHHHHHh----hhC--CCcEEEeCCHHHHHHHHHHHHcc--------------------------CC---Ce
Q 013019          207 YGNPTTVVVEEKMSA----LEG--AESTVIMASGMSASTVMLLALVP--------------------------AG---GH  251 (451)
Q Consensus       207 ~~npt~~~Lee~LA~----l~g--ae~~vv~sSG~aAi~~al~all~--------------------------~G---D~  251 (451)
                      +.++....|.++|.+    +..  .+.+.+++||++|+.+++.....                          +|   .+
T Consensus        98 ~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~  177 (464)
T TIGR00699        98 LGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLS  177 (464)
T ss_pred             CCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCE
Confidence            567777777777754    443  25677889999999998875421                          11   26


Q ss_pred             EEEcCCCCcch-HHHHHHh----hhcCCc---EEEEeCC-------------------CCHHHHHHhhcC--CCeEEEEE
Q 013019          252 IVTTTDCYRKT-RIFIETV----LPKMGI---TATVIDP-------------------ADMEGLEAALNN--NNVSLFFT  302 (451)
Q Consensus       252 VIv~~~~Y~~t-~~~l~~~----l~~~Gi---~v~~vd~-------------------~D~d~Le~ai~~--~~tklV~l  302 (451)
                      ||.....|.+. ...+...    ....+.   .+..++.                   .+++.+++++++  .++.+|++
T Consensus       178 ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~  257 (464)
T TIGR00699       178 ILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIV  257 (464)
T ss_pred             EEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            88888888773 2222110    001011   1111110                   135567777742  25899999


Q ss_pred             eCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC-C-----ccccccCC--CcEEEECCcccCCc
Q 013019          303 ESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-L-----NQKALSLG--ADLVLHSATKFIGG  361 (451)
Q Consensus       303 esPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~-~-----~~~pl~~G--aDiVv~S~SK~l~G  361 (451)
                      |......|.+.+    +++|.++|++||+++|+||++... .     ..+....-  .||++  ++|.+++
T Consensus       258 EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t--~gK~lg~  326 (464)
T TIGR00699       258 EPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVT--FSKKFQT  326 (464)
T ss_pred             eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEE--ehhhhcc
Confidence            988777777776    999999999999999999985211 1     11111222  68866  6999864

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.49  E-value=1.6e-05  Score=84.23  Aligned_cols=221  Identities=14%  Similarity=0.139  Sum_probs=123.4

Q ss_pred             CCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHcc--------CC------CeEEEcCCCCcchHH-HHH
Q 013019          206 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP--------AG------GHIVTTTDCYRKTRI-FIE  267 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all~--------~G------D~VIv~~~~Y~~t~~-~l~  267 (451)
                      .+.++...+|.++|+++.+   .+.+.+++||++|+..++.....        .|      .+||.....|.+... .+.
T Consensus        88 ~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als  167 (443)
T PRK08297         88 DVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLS  167 (443)
T ss_pred             CcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhh
Confidence            3456777778888888762   35788889999999999875521        12      568888888877322 221


Q ss_pred             Hhh---------hcCC---cEEEEeC----C-----------CCHHHHHHhhc--CCCeEEEEEeCCCCCccccc----c
Q 013019          268 TVL---------PKMG---ITATVID----P-----------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCV----D  314 (451)
Q Consensus       268 ~~l---------~~~G---i~v~~vd----~-----------~D~d~Le~ai~--~~~tklV~lesPsNPtG~v~----D  314 (451)
                      ..-         ...+   +....+.    .           .+++++++.+.  .+++.+|++|......|.+.    -
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~y  247 (443)
T PRK08297        168 LTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEF  247 (443)
T ss_pred             hcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHH
Confidence            100         0000   1000000    0           12345566664  23589999997765556542    3


Q ss_pred             HHHHHHHHHhcCCEEEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHH-Hh--H
Q 013019          315 VKLVSDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-LH--H  385 (451)
Q Consensus       315 L~~IaelA~~~g~~lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~-~~--~  385 (451)
                      +++|.++|++||+++|+||++... ..     ..-+..-.||++  ++|.++     .+|++.+++ +.+.... +.  .
T Consensus       248 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~-----~~a~l~~~~-i~~~~~~~~~~~~  319 (443)
T PRK08297        248 FAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKTQ-----VCGIMAGRR-VDEVEDNVFAVSS  319 (443)
T ss_pred             HHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--eccccc-----ccceecchH-HHHhhhhhccCcc
Confidence            899999999999999999996421 11     111222368887  789873     356665543 2221111 10  0


Q ss_pred             hhCC--CccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH----cCCCeE-EEe
Q 013019          386 VLGG--ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILE----AHPKVL-LLF  434 (451)
Q Consensus       386 ~~G~--~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~----~~p~V~-~V~  434 (451)
                      ..+.  ..+|..+..++..|+.+..  .+++..+..+.+.+.|+    ++|.+. .|+
T Consensus       320 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vr  377 (443)
T PRK08297        320 RINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVR  377 (443)
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeee
Confidence            1111  2466666555555554432  23444444455544443    356443 444

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=98.47  E-value=1.7e-05  Score=80.73  Aligned_cols=212  Identities=15%  Similarity=0.201  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhhh----CC---CcEEEeCCHH-HHHHHHHHHHc-cCCCeEEEcCCCCcchHHHHHHhhhcCC-cEEEE-e
Q 013019          212 TVVVEEKMSALE----GA---ESTVIMASGM-SASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMG-ITATV-I  280 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga---e~~vv~sSG~-aAi~~al~all-~~GD~VIv~~~~Y~~t~~~l~~~l~~~G-i~v~~-v  280 (451)
                      ..-+++.+|++.    |.   .+-+++|+|. .|+..++..++ .+.+-|+++-|-|+-.-.-+    ..+| ..+.+ .
T Consensus       115 v~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti----~l~~~~~v~YyL  190 (475)
T KOG0258|consen  115 VPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATI----SLLGGTQVPYYL  190 (475)
T ss_pred             ChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHH----HHhCCcccceee
Confidence            344556666544    42   2345666666 78877776654 45678999998876432222    2222 22222 2


Q ss_pred             C-----CCCHHHHHHhhcC----CCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCccc------
Q 013019          281 D-----PADMEGLEAALNN----NNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQK------  342 (451)
Q Consensus       281 d-----~~D~d~Le~ai~~----~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~~~------  342 (451)
                      |     ..|.++|++.+++    -+++++++-+|.||||.+.   .|++|.++|++.|+.|+.|+.|-.-+...      
T Consensus       191 dEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhS  270 (475)
T KOG0258|consen  191 DEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHS  270 (475)
T ss_pred             ccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHh
Confidence            3     2477777776653    2477777779999999997   58899999999999999999863321111      


Q ss_pred             ---c-ccCC---C----cEEEECCcccCCccccceeEEEEe---CHHHHHHHHHHhH------hhCC-----Cc------
Q 013019          343 ---A-LSLG---A----DLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHH------VLGG-----AL------  391 (451)
Q Consensus       343 ---p-l~~G---a----DiVv~S~SK~l~G~gdv~gG~Iv~---~~eli~~lr~~~~------~~G~-----~l------  391 (451)
                         . .++|   .    -+..+|.||.+.|--.-+||+.=.   .++..+.+.+...      ..|.     .+      
T Consensus       271 fKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pg  350 (475)
T KOG0258|consen  271 FKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPG  350 (475)
T ss_pred             HHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCC
Confidence               0 1111   2    156789999888765567888642   2344443333221      1110     01      


Q ss_pred             -cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          392 -NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       392 -s~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                       ..++.+...     -..-++...+.|+.+-+.++..++|..
T Consensus       351 d~Sy~~~~~E-----kd~il~~l~~ra~l~~~~~ns~~gi~c  387 (475)
T KOG0258|consen  351 DPSYDLFSSE-----KDGILSSLRSRAKLTEDAFNSLEGISC  387 (475)
T ss_pred             Ccchhhhhhh-----hHhHHHHHHHHhHHHHHHHhhcCceee
Confidence             112222211     122244555677888888888888754

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.43  E-value=3e-06  Score=87.10  Aligned_cols=153  Identities=18%  Similarity=0.239  Sum_probs=98.6

Q ss_pred             CcEEEeC--CHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--------CCHHHHHHhhc
Q 013019          226 ESTVIMA--SGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAALN  293 (451)
Q Consensus       226 e~~vv~s--SG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--------~D~d~Le~ai~  293 (451)
                      ..+++++  +|| ++.+.++++.  +.++.||.+.-.+.+.+..+    ...|.++..++.        .|++.++++++
T Consensus        75 ~~~~~vP~atgm-~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai----~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~  149 (389)
T PF05889_consen   75 KSCFVVPMATGM-SLTLCLLALRMRPKAKYVIWPRIDQKSCFKAI----ERAGLEPVVVENVLEGDELITDLEAIEAKIE  149 (389)
T ss_dssp             CEEEEESS-HHH-HHHHHHHHHHHHCT--EEEEEEEETHHHHHHH----HHTT-EEEEE-EEEETTEEEEHHHHHHHHHH
T ss_pred             cceEEEeccccc-HHHHHHHHHhcccCCceEEEeeccccchHHHH----HhcCCeEEEeeccCCCCeeeccHHHHHHHHH
Confidence            5567764  555 5556666664  56789999887777665433    344777666652        25777777775


Q ss_pred             C--CCeEEEEEeCCCCCcccccc-HHHHHHHHHhcCCEEEEecCCCCC------CccccccCC-CcEEEECCcccCCccc
Q 013019          294 N--NNVSLFFTESPTNPFLRCVD-VKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLG-ADLVLHSATKFIGGHN  363 (451)
Q Consensus       294 ~--~~tklV~lesPsNPtG~v~D-L~~IaelA~~~g~~lVVD~tfa~~------~~~~pl~~G-aDiVv~S~SK~l~G~g  363 (451)
                      +  .+..+.++.+++-..++..| +++|+++|+++|++.++-++|+--      ..++....| .|+++.|+-|-|--+.
T Consensus       150 ~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPv  229 (389)
T PF05889_consen  150 ELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPV  229 (389)
T ss_dssp             HHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEES
T ss_pred             HhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecC
Confidence            3  13578888888888899988 999999999999999999999851      123333444 6999999999887663


Q ss_pred             cceeEEEEe-CHHHHHHHHHHhH
Q 013019          364 DVLAGSISG-SGKLVTQIRNLHH  385 (451)
Q Consensus       364 dv~gG~Iv~-~~eli~~lr~~~~  385 (451)
                        .++.+++ ++..+..+.+...
T Consensus       230 --Ggai~As~~~~~i~~vs~~Yp  250 (389)
T PF05889_consen  230 --GGAIMASFDPSGILAVSKEYP  250 (389)
T ss_dssp             --SHEEEEESSHHHHHHHHHTSH
T ss_pred             --CCcEEEecCHHHHHHHHHHhh
Confidence              2344444 4567777765443

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.26  E-value=2e-05  Score=81.88  Aligned_cols=212  Identities=16%  Similarity=0.139  Sum_probs=132.9

Q ss_pred             HHHHHHhhhCCCc---EEEeCCHHHHHHHHHHHH---ccC--C---CeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          215 VEEKMSALEGAES---TVIMASGMSASTVMLLAL---VPA--G---GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       215 Lee~LA~l~gae~---~vv~sSG~aAi~~al~al---l~~--G---D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      .-..++.+++++.   ...+++|++++..+....   .+.  |   -.++++..    ....+++....++++++.++. 
T Consensus       125 ~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~----v~~a~eK~a~yf~v~l~~V~~~  200 (491)
T KOG1383|consen  125 CVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQN----VHAAFEKAARYFEVELREVPLD  200 (491)
T ss_pred             HHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHH----HHHHHHHHHhhEEEEEEeeecc
Confidence            3455677777643   233455667754444332   122  2   12444332    334455666777887777653 


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHh-cCCEEEEecCCCCCCc----cc--cccC---C
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLN----QK--ALSL---G  347 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~-~g~~lVVD~tfa~~~~----~~--pl~~---G  347 (451)
                           .|+..+.+.++++ |.+|+.+.|+-|+|.+.|+++|.++.-+ +++++++|.+-+.++.    ..  ++++   |
T Consensus       201 ~~~~~~D~~k~~~~i~eN-ti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~  279 (491)
T KOG1383|consen  201 EGDYRVDPGKVVRMIDEN-TIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPG  279 (491)
T ss_pred             ccceEecHHHHHHHhccc-eEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCC
Confidence                 3789999999985 9999999999999999999999999999 9999999999655433    11  2222   2


Q ss_pred             CcEEEECCcccCCccccceeEEEE-eCHHHH-HHHHHHhHhhCC----------Cc--cHHHHHHH--HHhhHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSIS-GSGKLV-TQIRNLHHVLGG----------AL--NPNAAYLI--IRGMKTLHLRVQ  411 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv-~~~eli-~~lr~~~~~~G~----------~l--s~~~a~l~--lrgL~tl~~Rl~  411 (451)
                      +.-+..+.|||--.+.  ..|+++ .++++. +++......+|+          ..  .-..+|..  .-|-+.+...++
T Consensus       280 V~Sisa~~HKYGl~~~--G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~  357 (491)
T KOG1383|consen  280 VTSISADGHKYGLAPA--GSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQ  357 (491)
T ss_pred             ceeEeeccceeeeeec--CcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHH
Confidence            3344556899843332  134444 444432 222211122221          11  12335543  346677888899


Q ss_pred             HHHHHHHHHHHHHHcCCCeEEE
Q 013019          412 QQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      ++.++++.|.+.+++.+++.-+
T Consensus       358 ~ive~~~~l~egie~i~~i~i~  379 (491)
T KOG1383|consen  358 NIVETARKLREGIENIKGIKIV  379 (491)
T ss_pred             HHHHHHHHHHHhhhccccceec
Confidence            9999999999999987666443

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.19  E-value=2.9e-05  Score=79.96  Aligned_cols=202  Identities=12%  Similarity=0.145  Sum_probs=127.9

Q ss_pred             CcEEEeCCHHHHHHHHHHHHc-c--C-----C-----C-eEEEcCCCCcchHHHHHHhhhcCC---cEEEEeCC-----C
Q 013019          226 ESTVIMASGMSASTVMLLALV-P--A-----G-----G-HIVTTTDCYRKTRIFIETVLPKMG---ITATVIDP-----A  283 (451)
Q Consensus       226 e~~vv~sSG~aAi~~al~all-~--~-----G-----D-~VIv~~~~Y~~t~~~l~~~l~~~G---i~v~~vd~-----~  283 (451)
                      .+.++.++|+-++.-++.... +  |     |     + .+.+++.+|.+..    +....+|   -.+..++.     .
T Consensus       160 ~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~----kaAa~lg~gtd~c~~v~t~e~Gkm  235 (510)
T KOG0629|consen  160 GDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIK----KAAAFLGLGTDHCIKVKTDERGKM  235 (510)
T ss_pred             CCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHH----HHHHHhccCCceeEEecccccCcc
Confidence            478888888855544443221 1  1     1     2 2444555665543    3333344   23444443     3


Q ss_pred             CHHHHHHhhcCCC-----eEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc----ccC---CCcEE
Q 013019          284 DMEGLEAALNNNN-----VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----LSL---GADLV  351 (451)
Q Consensus       284 D~d~Le~ai~~~~-----tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p----l~~---GaDiV  351 (451)
                      ++++||+.|.+.+     +-+|-...-+...|...||..|+++|++|+.|++||.+++.++....    .-.   -++-|
T Consensus       236 ~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~Sv  315 (510)
T KOG0629|consen  236 IPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSV  315 (510)
T ss_pred             chHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCce
Confidence            6889988885421     33444444455678889999999999999999999999987644321    111   26889


Q ss_pred             EECCcccCCccccceeEEEEeCHH-HHHHHHHHhH---------------------hhCCCccHHHHHHHHH--hhHHHH
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHH---------------------VLGGALNPNAAYLIIR--GMKTLH  407 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~e-li~~lr~~~~---------------------~~G~~ls~~~a~l~lr--gL~tl~  407 (451)
                      ..+.||+++.+-  -.+.+..+.+ ++++......                     ..|-..+.+.-|+.++  |.+.++
T Consensus       316 twnpHK~~gapl--qCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe  393 (510)
T KOG0629|consen  316 TWNPHKLMGAPL--QCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFE  393 (510)
T ss_pred             eecHHHhhcCcc--hhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHH
Confidence            999999998763  4555544432 3333222110                     1233456677888764  667788


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          408 LRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      .++++..++|+.+.+.|++.++-..|
T Consensus       394 ~~v~k~~~lA~yl~~~lrer~~~~~l  419 (510)
T KOG0629|consen  394 AQVDKCLRLAEYLYDRLREREGFEML  419 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccceeh
Confidence            88999999999999999998765444

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=97.94  E-value=0.00033  Score=72.97  Aligned_cols=237  Identities=15%  Similarity=0.231  Sum_probs=143.4

Q ss_pred             HHHHhcccCCccccCCCchhHHHHH----HHHHhhhCC-----------CcEEEeCCHHHHHHHHHHHHc-------cCC
Q 013019          192 IDFKEKRRASFEYGRYGNPTTVVVE----EKMSALEGA-----------ESTVIMASGMSASTVMLLALV-------PAG  249 (451)
Q Consensus       192 ~~~~~~~~~~~~Y~R~~npt~~~Le----e~LA~l~ga-----------e~~vv~sSG~aAi~~al~all-------~~G  249 (451)
                      .++..+..+.-.++....|...+||    ++|+++.+-           ...++++|.+++...++++..       +.+
T Consensus        91 admLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~  170 (511)
T KOG0628|consen   91 ADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSR  170 (511)
T ss_pred             HHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcC
Confidence            3444444444556667899999998    455555432           357889999988777776531       222


Q ss_pred             C------------eEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC-----CHHHHHHhhcCCC----eEEEEEeCCCCC
Q 013019          250 G------------HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNN----VSLFFTESPTNP  308 (451)
Q Consensus       250 D------------~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~-----D~d~Le~ai~~~~----tklV~lesPsNP  308 (451)
                      +            .+-+++..|.+    +++.+-.-|++++.+..+     +.+.|+++|+++.    +-.+++.|-. -
T Consensus       171 ~p~~~e~~~~~~lV~Y~SDqahss----veka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~G-T  245 (511)
T KOG0628|consen  171 PPELHESSVLARLVAYCSDQAHSS----VEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLG-T  245 (511)
T ss_pred             CCcccchhhhhhheEEecCcccch----HHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeec-C
Confidence            1            13334444444    334333446666666432     5778888886531    2233332322 2


Q ss_pred             cccc--ccHHHHHHHHHhcCCEEEEecCCCCCCc-c---ccccCC---CcEEEECCcccCCccccceeEEE---------
Q 013019          309 FLRC--VDVKLVSDLCHKKGAIVCIDGTFATPLN-Q---KALSLG---ADLVLHSATKFIGGHNDVLAGSI---------  370 (451)
Q Consensus       309 tG~v--~DL~~IaelA~~~g~~lVVD~tfa~~~~-~---~pl~~G---aDiVv~S~SK~l~G~gdv~gG~I---------  370 (451)
                      |+.+  .+|.+|..+|+++|+||+||.+|+.... .   +.+-.|   +|-+-...||++-.+-|.-.=|+         
T Consensus       246 T~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~  325 (511)
T KOG0628|consen  246 TSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRA  325 (511)
T ss_pred             ccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeee
Confidence            3433  4799999999999999999999985322 1   222223   57777778998876655432222         


Q ss_pred             -EeCHHHHHH--------HHHHhHhhCCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          371 -SGSGKLVTQ--------IRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       371 -v~~~eli~~--------lr~~~~~~G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                       -.++..++-        ++.++-.+|-..-..-.|..+|  |.+.+..++.++.+.++.+-+.+.+-+..+.+
T Consensus       326 ~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~  399 (511)
T KOG0628|consen  326 FNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIV  399 (511)
T ss_pred             eecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceee
Confidence             122222211        1223333455555667787776  67889999999999999888888877765554

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=97.83  E-value=9.6e-05  Score=74.71  Aligned_cols=174  Identities=15%  Similarity=0.170  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHhhhC----C---CcEEEeCCHH-HHHHHHHHHHccC--C----CeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          211 TTVVVEEKMSALEG----A---ESTVIMASGM-SASTVMLLALVPA--G----GHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       211 t~~~Lee~LA~l~g----a---e~~vv~sSG~-aAi~~al~all~~--G----D~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      ...+|++.|.+|+.    +   ..-|++++|+ +-+++++.+|...  .    -+|+...|.|..... ...+++....+
T Consensus        44 ~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~-qt~~f~s~~y~  122 (363)
T PF04864_consen   44 ISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPE-QTDFFDSRLYK  122 (363)
T ss_dssp             S-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHH-HCCCT-BTTEE
T ss_pred             ccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHH-HHHhccccCcc
Confidence            35678888888763    1   4678888888 7788888887554  1    268998888876442 22333332222


Q ss_pred             EEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc-cccCCCcEEEECC
Q 013019          277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-ALSLGADLVLHSA  355 (451)
Q Consensus       277 v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~-pl~~GaDiVv~S~  355 (451)
                      .. -|.....   .. +...+-+=++++||||.|.+-  +.+   .+.-+..+|.|-+|--|-... +-...-||.++++
T Consensus       123 w~-Gda~~~~---~~-~~~~~~IElVTSPNNPDG~lr--~~V---~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~  192 (363)
T PF04864_consen  123 WA-GDASNFK---NS-DNPSPYIELVTSPNNPDGQLR--EAV---LNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFTL  192 (363)
T ss_dssp             EE-EECCCGT---T--S-CCGEEEEEESS-TTT--------S---STTTEEEEEEE-TT-STTTS---S-B--SEEEEEH
T ss_pred             cc-ccHHhhc---cC-CCCCCeEEEEeCCCCCccccc--chh---cCCCCcceeeeeeeecccccccCCCCCCceEEEEE
Confidence            21 1221111   00 111234447889999999752  122   244566789999976542211 1122348999999


Q ss_pred             cccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHH
Q 013019          356 TKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAA  396 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a  396 (451)
                      ||.-| |...+.||.+. ++++.+++..+...-..+++-..+
T Consensus       193 SK~TG-HAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQ  233 (363)
T PF04864_consen  193 SKLTG-HAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQ  233 (363)
T ss_dssp             HHHCS--GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHH
T ss_pred             ecccC-ccccccceeeecCHHHHHHHHHHHHHhcccCcHHHH
Confidence            99764 54456666555 556778887766554444554443

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.82  E-value=0.00027  Score=76.05  Aligned_cols=215  Identities=19%  Similarity=0.189  Sum_probs=135.3

Q ss_pred             HHHHHHHHHhhhCCCcEEEe-CCHHHHHH---HHHHHHc-cCCC----eEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALEGAESTVIM-ASGMSAST---VMLLALV-PAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~gae~~vv~-sSG~aAi~---~al~all-~~GD----~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...||+.|.++.|-+..-+. +||.+.-+   .++++.+ ..|+    .-+++-..||....    .+...|.++..++.
T Consensus       584 f~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPA----SA~MagmkvvpV~~  659 (1001)
T KOG2040|consen  584 FTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPA----SAAMAGMKVVPVGC  659 (1001)
T ss_pred             HHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChh----hHHhcCCEEEEeec
Confidence            45688888988887665544 57775433   3444443 3443    36777778887653    23455777766653


Q ss_pred             -----CCHHHHHHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCC--CCccccccCCCcEEEE
Q 013019          283 -----ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLH  353 (451)
Q Consensus       283 -----~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~--~~~~~pl~~GaDiVv~  353 (451)
                           .|..+|++..+++  +..++.+..|+..----.++++++++.|+||--|..|.+-..  --..+|.++|+|+.--
T Consensus       660 ~~~G~id~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~HL  739 (1001)
T KOG2040|consen  660 DANGNIDMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCHL  739 (1001)
T ss_pred             cCCCCccHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccccccceee
Confidence                 3777887766543  467888888984322334799999999999999999998322  2356888999999988


Q ss_pred             CCcccCCcc-c--cceeEEEEeCHHHHHHHHHHh----------H--------hhCCC--ccHHHHHHHHHhhHHHHHHH
Q 013019          354 SATKFIGGH-N--DVLAGSISGSGKLVTQIRNLH----------H--------VLGGA--LNPNAAYLIIRGMKTLHLRV  410 (451)
Q Consensus       354 S~SK~l~G~-g--dv~gG~Iv~~~eli~~lr~~~----------~--------~~G~~--ls~~~a~l~lrgL~tl~~Rl  410 (451)
                      -++|.|+-+ |  .-.+|-|..++.+..-+-..-          .        .+|..  +..--+|.-+.|.+.|..--
T Consensus       740 NLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as  819 (1001)
T KOG2040|consen  740 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDAS  819 (1001)
T ss_pred             cccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhh
Confidence            999998722 1  122344444444332221100          0        12211  11122555555666665555


Q ss_pred             HHHHHHHHHHHHHHHcCCCe
Q 013019          411 QQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~p~V  430 (451)
                      +...-||..+++.|+.|=++
T Consensus       820 ~~AiLNaNYMakRLe~hYki  839 (1001)
T KOG2040|consen  820 KIAILNANYMAKRLESHYKI  839 (1001)
T ss_pred             HHHhhhhHHHHHHHhhccce
Confidence            56667899999999998544

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.73  E-value=0.00012  Score=78.75  Aligned_cols=137  Identities=20%  Similarity=0.351  Sum_probs=99.6

Q ss_pred             HHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhh
Q 013019          216 EEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL  292 (451)
Q Consensus       216 ee~LA~l~ga--e~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai  292 (451)
                      +..++++.|-  ..+-++--|++|-.++.++. ..++.++++...+|+.|...++.....+|+++...|   +++... .
T Consensus       169 QTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~---~~~~~~-s  244 (1001)
T KOG2040|consen  169 QTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD---IKEADY-S  244 (1001)
T ss_pred             HHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecC---HHHhhc-c
Confidence            5567788775  45666777886555544433 455678999999999999988877888888866544   333322 2


Q ss_pred             cCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCC-CCCCccccccCCCcEEEECCccc
Q 013019          293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKF  358 (451)
Q Consensus       293 ~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tf-a~~~~~~pl~~GaDiVv~S~SK~  358 (451)
                      .+ ++..|++..|. --|.+.|.+++++.+++.|.++++-.-. +--++..|.++|+||++.|...+
T Consensus       245 ~~-~v~gvlvQYP~-t~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF  309 (1001)
T KOG2040|consen  245 SK-DVSGVLVQYPD-TEGSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF  309 (1001)
T ss_pred             cc-ceeEEEEEcCC-CCCcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence            23 38899998887 4799999999999999999886654332 22355678899999999997664

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=97.71  E-value=0.0021  Score=65.44  Aligned_cols=212  Identities=22%  Similarity=0.236  Sum_probs=127.0

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCC-----CeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-----GHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~G-----D~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      -.|+  ++.....|++.+.+.+|-+..+-+.-|-.|-...+..++++|     .+.++..+.|..|-+.-   .+..|..
T Consensus        73 EAYa--gsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h---~~~ng~~  147 (471)
T COG3033          73 EAYA--GSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGH---IQINGAT  147 (471)
T ss_pred             hhhc--ccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHH---HHhcCCc
Confidence            3566  566778899999999998888888788877777777676655     45555666665543321   1122221


Q ss_pred             EEE--eC-------------CCCHHHHHHhhcC---CCeEEEEEeCCCCC-ccccc---cHHHHHHHHHhcCCEEEEecC
Q 013019          277 ATV--ID-------------PADMEGLEAALNN---NNVSLFFTESPTNP-FLRCV---DVKLVSDLCHKKGAIVCIDGT  334 (451)
Q Consensus       277 v~~--vd-------------~~D~d~Le~ai~~---~~tklV~lesPsNP-tG~v~---DL~~IaelA~~~g~~lVVD~t  334 (451)
                      ..-  +|             -.|++.|++.|++   +++-.|++.-.+|- .|...   +++++.+||++++++++.|.+
T Consensus       148 ~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~  227 (471)
T COG3033         148 PRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAA  227 (471)
T ss_pred             cccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehh
Confidence            111  11             1378889888874   23556666444444 34443   588999999999999999998


Q ss_pred             -CCC---CCccc---------------cccCCCcEEEECCcccCCccccceeEEEEeCHH----HHHHHHHHhH------
Q 013019          335 -FAT---PLNQK---------------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK----LVTQIRNLHH------  385 (451)
Q Consensus       335 -fa~---~~~~~---------------pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e----li~~lr~~~~------  385 (451)
                       |+.   .+.++               .+. .+|-.+-|.-|---..   +||+++.+++    +...++...-      
T Consensus       228 RfaENaYFIk~rE~gYrd~sI~~IarEm~s-YaD~~~mS~KKD~lvn---mGGfl~~~D~~~fDvy~~~~~~~V~~eG~~  303 (471)
T COG3033         228 RFAENAYFIKQREPGYRDWSIEEIAREMYS-YADGCTMSAKKDGLVN---MGGFLCFKDDSFFDVYEECRTLVVVQEGFP  303 (471)
T ss_pred             hhhhhhhhhhhcCcccccccHHHHHHHHHh-hhhhheeeccccceec---cccEEEecCccHHHHHHHHHhheEeecccc
Confidence             332   11111               112 3677788887753222   6899988765    5555554321      


Q ss_pred             hhCCCccHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          386 VLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       386 ~~G~~ls~~~a~l~lrgL~------tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .+| .++.-+...+..||.      .+..|++    ..+.|++.|++.
T Consensus       304 tYG-gl~GrdmealAvGL~e~~~~~yl~~Rv~----Qv~YL~~~l~~~  346 (471)
T COG3033         304 TYG-GLAGRDMEALAVGLREGVNFDYLAHRVA----QVQYLADGLEEA  346 (471)
T ss_pred             ccC-cccchhHHHHHHHHHHhcCcHHHHHHHH----HHHHHHHHHHhc
Confidence            223 233333222233443      3444444    467788888775

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=97.33  E-value=0.0036  Score=62.55  Aligned_cols=160  Identities=16%  Similarity=0.217  Sum_probs=112.1

Q ss_pred             HHHHHHhhhCC-C-cEEEeCCHHHHHHHHHHHHccCCC---eEEEcCCCCcchHHHHHHhhhcCCcEEE----EeCC---
Q 013019          215 VEEKMSALEGA-E-STVIMASGMSASTVMLLALVPAGG---HIVTTTDCYRKTRIFIETVLPKMGITAT----VIDP---  282 (451)
Q Consensus       215 Lee~LA~l~ga-e-~~vv~sSG~aAi~~al~all~~GD---~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~----~vd~---  282 (451)
                      .-..++.+.|+ + +.-+++|=+.-+..++.++.+|-.   +|+...-.|++-+-.++.-++..|+.+.    .+++   
T Consensus       116 il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREG  195 (465)
T KOG3846|consen  116 ILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREG  195 (465)
T ss_pred             hhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEeccccc
Confidence            45667778887 3 344455555666677777877753   5999988898876666666666666432    2222   


Q ss_pred             ---CCHHHHHHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCc
Q 013019          283 ---ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 ---~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~S  356 (451)
                         ...+++.+.|+++  .+.+|++...+-.||...|+.+|...-+..|+++-.|=+++.+ +...-.++|+|+.+...-
T Consensus       196 EetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSY  275 (465)
T KOG3846|consen  196 EETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSY  275 (465)
T ss_pred             ccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeee
Confidence               1244555555432  3788999888899999999999997667789999999987754 333445789999999999


Q ss_pred             ccCCccccceeEEEEeCH
Q 013019          357 KFIGGHNDVLAGSISGSG  374 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~  374 (451)
                      ||++....-+||..+-.+
T Consensus       276 KYlnaGaGgIgGlFvHek  293 (465)
T KOG3846|consen  276 KYLNAGAGGIGGLFVHEK  293 (465)
T ss_pred             cccccCCCccceeeeehh
Confidence            999855445677766443

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=97.01  E-value=0.0048  Score=61.48  Aligned_cols=200  Identities=17%  Similarity=0.224  Sum_probs=110.7

Q ss_pred             HHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH---ccCCCeEEEcCCCCcchHHHHHHh----hhc-CCc-EEEEe---CC
Q 013019          215 VEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETV----LPK-MGI-TATVI---DP  282 (451)
Q Consensus       215 Lee~LA~l~gae~~vv~sSG~aAi~~al~al---l~~GD~VIv~~~~Y~~t~~~l~~~----l~~-~Gi-~v~~v---d~  282 (451)
                      .+...+.+-+-.-+++++||++|+.++|+..   .+..| +|+-+..|.+.....-++    +.. -++ +.+++   +.
T Consensus        92 A~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqD-vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPc  170 (452)
T KOG1403|consen   92 ARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQD-VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPC  170 (452)
T ss_pred             HHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCc-eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCC
Confidence            3444444444566788899999999988743   33344 555566666532211011    000 011 11111   11


Q ss_pred             ---------------CC-----HHHHHHhhcC-----CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEec
Q 013019          283 ---------------AD-----MEGLEAALNN-----NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDG  333 (451)
Q Consensus       283 ---------------~D-----~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~  333 (451)
                                     .|     .+.+++.+++     ..+.+.+.|+-.+=-|.+++    .+++++..|.+|-+.|.||
T Consensus       171 PDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDE  250 (452)
T KOG1403|consen  171 PDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADE  250 (452)
T ss_pred             ccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeeh
Confidence                           01     2344444432     13555666776666677765    5788888999999999999


Q ss_pred             CCCCC-------CccccccCCCcEEEECCcccCC-ccccceeEEEEeCHHHHHHHHH----HhHhhCCCccHHHHHHHHH
Q 013019          334 TFATP-------LNQKALSLGADLVLHSATKFIG-GHNDVLAGSISGSGKLVTQIRN----LHHVLGGALNPNAAYLIIR  401 (451)
Q Consensus       334 tfa~~-------~~~~pl~~GaDiVv~S~SK~l~-G~gdv~gG~Iv~~~eli~~lr~----~~~~~G~~ls~~~a~l~lr  401 (451)
                      ....+       +.......-.|||.  +.|-+| ||.   .+.+++.+++.+.+..    +.+.+|+  +|..+...+.
T Consensus       251 VQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmGNGhP---Va~VattkeIA~Af~atgv~YFNTyGG--nPVsCAv~la  323 (452)
T KOG1403|consen  251 VQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMGNGHP---VAAVATTKEIAQAFHATGVEYFNTYGG--NPVSCAVGLA  323 (452)
T ss_pred             hhhcccccchhhhhhhhhccccchhe--ecccCCCCCe---eeEEeccHHHHHHhccccceehhccCC--CchhHHHHHH
Confidence            84321       22222233357776  788887 554   7888888888887664    2234444  4565555444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 013019          402 GMKTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       402 gL~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      -|+.+.  -+...++++++-++|
T Consensus       324 Vm~v~e--~E~Lq~ha~~vG~~L  344 (452)
T KOG1403|consen  324 VMRVCE--DENLQEHAQQVGEKL  344 (452)
T ss_pred             HHHHHh--hhhHHHHHHHHHHHH
Confidence            444332  133444555554444

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=96.91  E-value=0.053  Score=54.52  Aligned_cols=150  Identities=17%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             EEEeCCHHHHHHHHHH--HHccCCCeEEEcCCCCcchHHHHHHhhhcCCc----EEEEeCC----CCHHHHHHhhcCCCe
Q 013019          228 TVIMASGMSASTVMLL--ALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI----TATVIDP----ADMEGLEAALNNNNV  297 (451)
Q Consensus       228 ~vv~sSG~aAi~~al~--all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi----~v~~vd~----~D~d~Le~ai~~~~t  297 (451)
                      .+-.-||+.|+.....  +-.-....|.++.|.|.....++    +..|.    ...+.|.    .|++.+...|+..+.
T Consensus       102 ~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if----~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe  177 (410)
T KOG1412|consen  102 GVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIF----EKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPE  177 (410)
T ss_pred             ceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHH----HHcCCceeeeeeeecCCCceecHHHHHHHHhhCCC
Confidence            3445578877765532  22223557999999998876544    44452    2333442    367766666653222


Q ss_pred             -EEEEEeC-CCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcccc----------ccCCC-cEEEECCcccCCc
Q 013019          298 -SLFFTES-PTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA----------LSLGA-DLVLHSATKFIGG  361 (451)
Q Consensus       298 -klV~les-PsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~p----------l~~Ga-DiVv~S~SK~l~G  361 (451)
                       .++++.. -+||||.-..   ...|++..++++...+.|-+|-.....++          .+.|. -+|+.||+|-+|.
T Consensus       178 ~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGl  257 (410)
T KOG1412|consen  178 GSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGL  257 (410)
T ss_pred             CcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhccc
Confidence             3444433 3799997543   56788888889999999999633221111          12233 2788999999998


Q ss_pred             cccceeEE--EEeCHHHHHHHH
Q 013019          362 HNDVLAGS--ISGSGKLVTQIR  381 (451)
Q Consensus       362 ~gdv~gG~--Iv~~~eli~~lr  381 (451)
                      .+++.|-+  ++-++..+..+.
T Consensus       258 YneRvGnltvv~~n~a~i~~v~  279 (410)
T KOG1412|consen  258 YNERVGNLTVVVNNPAVIAGVK  279 (410)
T ss_pred             ccccccceEEEecChhHHHHHH
Confidence            87655433  333455554443

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=96.72  E-value=0.058  Score=54.89  Aligned_cols=195  Identities=15%  Similarity=0.195  Sum_probs=107.7

Q ss_pred             CccCCHHHHHHHHhcccCCccccCC-CchhHHHHHHHHHhhhCC----CcEEE---eCCHHHH--HHHHHHHHccCCCeE
Q 013019          183 YFFKKTAELIDFKEKRRASFEYGRY-GNPTTVVVEEKMSALEGA----ESTVI---MASGMSA--STVMLLALVPAGGHI  252 (451)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~Y~R~-~npt~~~Lee~LA~l~ga----e~~vv---~sSG~aA--i~~al~all~~GD~V  252 (451)
                      |+++...+.+....+....-.|--. |-|....+..+|+-=.+.    +.-++   +-||+.|  +.+-+++..-++..|
T Consensus        70 ~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I  149 (427)
T KOG1411|consen   70 YVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDI  149 (427)
T ss_pred             eeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccce
Confidence            5566665544433333333355433 334444444444321221    22222   2366644  455566666778999


Q ss_pred             EEcCCCCcchHHHHHHhhhcCCcEEEE---eCC----CCHHHHHHhhcCC--CeEEEEEeCCCCCcccccc---HHHHHH
Q 013019          253 VTTTDCYRKTRIFIETVLPKMGITATV---IDP----ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSD  320 (451)
Q Consensus       253 Iv~~~~Y~~t~~~l~~~l~~~Gi~v~~---vd~----~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~D---L~~Iae  320 (451)
                      .+++|.|+....    ++...|+.+.+   .|.    .|.+.+.+.+.+.  .--+++-..-+||||.-..   .++|.+
T Consensus       150 ~ip~PTWgNh~~----if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~  225 (427)
T KOG1411|consen  150 YIPDPTWGNHKN----IFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISD  225 (427)
T ss_pred             eecCCcccccCc----cccccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHH
Confidence            999999998653    34455666544   332    2544433334321  1223333346799996543   678888


Q ss_pred             HHHhcCCEEEEecCCCCCCcccc----------ccCCCc-EEEECCcccCCccccceeEE--EEeCHHHHHHHH
Q 013019          321 LCHKKGAIVCIDGTFATPLNQKA----------LSLGAD-LVLHSATKFIGGHNDVLAGS--ISGSGKLVTQIR  381 (451)
Q Consensus       321 lA~~~g~~lVVD~tfa~~~~~~p----------l~~GaD-iVv~S~SK~l~G~gdv~gG~--Iv~~~eli~~lr  381 (451)
                      +.++.+.+-++|-+|..+...+.          ++.|.. +++.|+.|-+|..|.+.|.+  ++.+.+...++.
T Consensus       226 ~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~  299 (427)
T KOG1411|consen  226 LIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVE  299 (427)
T ss_pred             HhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHH
Confidence            89999999999999654322211          122333 67789999999877544433  233445544443

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=96.06  E-value=0.035  Score=54.57  Aligned_cols=152  Identities=15%  Similarity=0.233  Sum_probs=85.8

Q ss_pred             CcEEEe--CCHHHHHHHHHHHHcc--C-CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--------CCHHHHHHhh
Q 013019          226 ESTVIM--ASGMSASTVMLLALVP--A-GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--------ADMEGLEAAL  292 (451)
Q Consensus       226 e~~vv~--sSG~aAi~~al~all~--~-GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--------~D~d~Le~ai  292 (451)
                      ..++++  .+||+ +.+.+..+..  | ...|+-.+-.--+.+..    .-..|.+...++.        .|++.+++.+
T Consensus        76 ~nc~vvpl~tgms-lslc~~s~r~krpkakyiiw~ridqks~~ks----i~~agfepiiie~i~d~d~l~tdleav~~~i  150 (432)
T KOG3843|consen   76 ANCFVVPLATGMS-LSLCFLSLRHKRPKAKYIIWLRIDQKSCFKS----IIHAGFEPIIIENILDGDELITDLEAVEAII  150 (432)
T ss_pred             hceeEEecccccc-HHHHHHHHhhcCCcccEEEEEecchHHHHHH----HHhcCCCceeeeccccchHHHHhHHHHHHHH
Confidence            556554  57773 4444545432  2 34465554333332221    1123555444432        3677888777


Q ss_pred             cCCCeE-EEEE-eCCCCCccccc-cHHHHHHHHHhcCCEEEEecCCCCCCc------cccccCC-CcEEEECCcccCCcc
Q 013019          293 NNNNVS-LFFT-ESPTNPFLRCV-DVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-ADLVLHSATKFIGGH  362 (451)
Q Consensus       293 ~~~~tk-lV~l-esPsNPtG~v~-DL~~IaelA~~~g~~lVVD~tfa~~~~------~~pl~~G-aDiVv~S~SK~l~G~  362 (451)
                      ++.... .+.+ .+.+.-.-+.. .+++|+.+|..|+++-+|.|+|+--..      +...+.| .|.++.|+-|-|.-+
T Consensus       151 ee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~grida~vqsldknf~vp  230 (432)
T KOG3843|consen  151 EELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVP  230 (432)
T ss_pred             HHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHHHHHhhhcceee
Confidence            653223 2222 22222222333 499999999999999999999874211      1112223 588999999999877


Q ss_pred             ccceeEEEEe--CHHHHHHHHHHhH
Q 013019          363 NDVLAGSISG--SGKLVTQIRNLHH  385 (451)
Q Consensus       363 gdv~gG~Iv~--~~eli~~lr~~~~  385 (451)
                         .||.++.  ++.+++.+.+...
T Consensus       231 ---vggaiia~fk~n~iq~iak~yp  252 (432)
T KOG3843|consen  231 ---VGGAIIAAFKDNFIQEIAKMYP  252 (432)
T ss_pred             ---cchhHhhHhHHHHHHHHHHhCC
Confidence               3676664  4567777665543

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=96.06  E-value=0.017  Score=52.54  Aligned_cols=50  Identities=16%  Similarity=0.355  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhhC--C----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcc
Q 013019          212 TVVVEEKMSALEG--A----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK  261 (451)
Q Consensus       212 ~~~Lee~LA~l~g--a----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~  261 (451)
                      ++++.+.+.+..|  .    ++.++++++++|+..++.+++.+||.|++++|.|++
T Consensus        98 R~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         98 RKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             HHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            4455555555545  1    344445555599999999999999999999999974

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=95.68  E-value=0.18  Score=51.65  Aligned_cols=201  Identities=13%  Similarity=0.131  Sum_probs=110.1

Q ss_pred             HHHHHHHHHhhhCCC---cEEEeCCHH-HHHHHHHHHHccCCCe--EEEcCCCCcchHHHHHHhhhcCCcEEEEeC----
Q 013019          212 TVVVEEKMSALEGAE---STVIMASGM-SASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVID----  281 (451)
Q Consensus       212 ~~~Lee~LA~l~gae---~~vv~sSG~-aAi~~al~all~~GD~--VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd----  281 (451)
                      ..+.|+.+.++++.+   ..+++..|. .....+.+.|+..+..  |..  ..|...-  + ...+.++.+....+    
T Consensus        52 ~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~yv~~--g~Ws~~a--~-~eA~~~~~~~~~~~~~~~  126 (365)
T COG1932          52 LEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTDYVDT--GAWSEFA--I-KEAKKVGKQPKLIDARIE  126 (365)
T ss_pred             HHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCceeEee--eehhHhH--H-HHHHHhccccccccccee
Confidence            456788889999863   344444444 6777777888765542  433  2233211  1 12233332111111    


Q ss_pred             ------CCCHHHHHHhhcCCCeEEEEEeCCCCC-cccccc-HHHHHHHHHhcCCEEEEecCCCCCCccccccC-CCcEEE
Q 013019          282 ------PADMEGLEAALNNNNVSLFFTESPTNP-FLRCVD-VKLVSDLCHKKGAIVCIDGTFATPLNQKALSL-GADLVL  352 (451)
Q Consensus       282 ------~~D~d~Le~ai~~~~tklV~lesPsNP-tG~v~D-L~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~-GaDiVv  352 (451)
                            ..+++.+.  +.++ ...|+++ +|+- +|.-.+ ...+.   .  +.++|+|.+-.  .+.++++. .-|++.
T Consensus       127 ~~~~~~iP~~~~~~--~~~~-~ayv~~~-~NeTi~Gv~v~~~p~~~---~--~~~~v~D~SS~--ilsr~iDvsk~dviy  195 (365)
T COG1932         127 EAGYGSIPDLSKWD--FSDN-DAYVHFC-WNETISGVEVPELPDIG---S--DGLLVADASSA--ILSRPIDVSKYDVIY  195 (365)
T ss_pred             ccCccCCCChhhcc--cCCC-ccEEEEe-cCCcccceEccCCCCCC---C--CceEEEecccH--HhcCCCChhHcceEE
Confidence                  12333332  3332 3335543 3322 243222 22221   1  27899998732  22233332 358999


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHHHHHH-h----H--------hhCCCccHHHHHHHHHhhHHHH------HHHHHH
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNL-H----H--------VLGGALNPNAAYLIIRGMKTLH------LRVQQQ  413 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-~----~--------~~G~~ls~~~a~l~lrgL~tl~------~Rl~~~  413 (451)
                      .+..|-+|+.|   .++++.++++++++... .    +        .+-.+++.+.-++....++++.      .-.++.
T Consensus       196 agaQKnlGpaG---ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn  272 (365)
T COG1932         196 AGAQKNLGPAG---LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARN  272 (365)
T ss_pred             EehhhccCccc---eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999887   78899999999887653 1    0        1112344444455555555543      334566


Q ss_pred             HHHHHHHHHHHHcCCCeE
Q 013019          414 NSTALRMAEILEAHPKVL  431 (451)
Q Consensus       414 ~~nA~~Lae~L~~~p~V~  431 (451)
                      .++++.|.+++.+.+..+
T Consensus       273 ~~ka~~LY~~id~s~fy~  290 (365)
T COG1932         273 QAKAQLLYDWIDKSDFYR  290 (365)
T ss_pred             HHHHHHHHHHHHhCCccc
Confidence            688999999999886543

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=90.72  E-value=3.2  Score=42.82  Aligned_cols=74  Identities=15%  Similarity=0.123  Sum_probs=49.5

Q ss_pred             HHHHHHhhcC-----CCeEEEEEeCCCCCccccc----cHHHHHHHHHhcCCEEEEecCCCC----C--Cccc--cccCC
Q 013019          285 MEGLEAALNN-----NNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFAT----P--LNQK--ALSLG  347 (451)
Q Consensus       285 ~d~Le~ai~~-----~~tklV~lesPsNPtG~v~----DL~~IaelA~~~g~~lVVD~tfa~----~--~~~~--pl~~G  347 (451)
                      ++++|+.|.+     .++.+|++|-..+.-|.-.    =++.|.+++++||+.+||||++-.    +  +...  .++.-
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P  334 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP  334 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence            5566666642     2478999998887766543    278999999999999999998522    2  1111  12234


Q ss_pred             CcEEEECCcccCC
Q 013019          348 ADLVLHSATKFIG  360 (451)
Q Consensus       348 aDiVv~S~SK~l~  360 (451)
                      .|+|.  |||-+-
T Consensus       335 pD~vT--FSKK~q  345 (484)
T KOG1405|consen  335 PDVVT--FSKKFQ  345 (484)
T ss_pred             cccee--hhhhhh
Confidence            67776  667654

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=89.11  E-value=1.2  Score=37.79  Aligned_cols=89  Identities=18%  Similarity=0.238  Sum_probs=61.4

Q ss_pred             HHHHHHhhhcCCcEEEEeCCC-CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCC
Q 013019          263 RIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPL  339 (451)
Q Consensus       263 ~~~l~~~l~~~Gi~v~~vd~~-D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~  339 (451)
                      ...+...+++.|.++.++|.. +.+++.+.+.+.++++|.+....  +.......++++..++.  ++.+++=+.+.+..
T Consensus        17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~--~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~   94 (121)
T PF02310_consen   17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSM--TPNLPEAKRLARAIKERNPNIPIVVGGPHATAD   94 (121)
T ss_dssp             HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESS--STHHHHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred             HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccC--cCcHHHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence            344556788889999988765 46778777765568888885443  33444567788877776  78999988876654


Q ss_pred             cccccc--CCCcEEEE
Q 013019          340 NQKALS--LGADLVLH  353 (451)
Q Consensus       340 ~~~pl~--~GaDiVv~  353 (451)
                      ....++  .|+|.++.
T Consensus        95 ~~~~l~~~~~~D~vv~  110 (121)
T PF02310_consen   95 PEEILREYPGIDYVVR  110 (121)
T ss_dssp             HHHHHHHHHTSEEEEE
T ss_pred             hHHHhccCcCcceecC
Confidence            444443  57887774

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>cd02067 B12-binding B12 binding domain (B12-BD)

Probab=83.87  E-value=6.8  Score=33.38  Aligned_cols=91  Identities=13%  Similarity=0.076  Sum_probs=57.7

Q ss_pred             HHHHHHhhhcCCcEEEEeCC-CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc---CCEEEEecCCCCC
Q 013019          263 RIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK---GAIVCIDGTFATP  338 (451)
Q Consensus       263 ~~~l~~~l~~~Gi~v~~vd~-~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~---g~~lVVD~tfa~~  338 (451)
                      ..++...++..|.++.+... ..++++.+.+.+.++.+|.++.-.  +....++.++.+.+++.   ++.+++=......
T Consensus        16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~--~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~   93 (119)
T cd02067          16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLL--TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR   93 (119)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence            34556678888999877653 346677666665568888885432  23445677888888775   4666666654433


Q ss_pred             CccccccCCCcEEEECC
Q 013019          339 LNQKALSLGADLVLHSA  355 (451)
Q Consensus       339 ~~~~pl~~GaDiVv~S~  355 (451)
                      ........|+|.+++..
T Consensus        94 ~~~~~~~~G~D~~~~~~  110 (119)
T cd02067          94 DFKFLKEIGVDAYFGPA  110 (119)
T ss_pred             hHHHHHHcCCeEEECCH
Confidence            22234456888887643

This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=82.35  E-value=6.5  Score=37.27  Aligned_cols=92  Identities=23%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHccCCCeEEE-cCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          233 SGMSASTVMLLALVPAGGHIVT-TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       233 SG~aAi~~al~all~~GD~VIv-~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|..+- .++.+|++.|-+|.+ .++.   ..... ..++..|+++...|..|.+.|.++++.  ...|++..+......
T Consensus         7 tG~~G~-~v~~~L~~~~~~V~~l~R~~---~~~~~-~~l~~~g~~vv~~d~~~~~~l~~al~g--~d~v~~~~~~~~~~~   79 (233)
T PF05368_consen    7 TGNQGR-SVVRALLSAGFSVRALVRDP---SSDRA-QQLQALGAEVVEADYDDPESLVAALKG--VDAVFSVTPPSHPSE   79 (233)
T ss_dssp             TSHHHH-HHHHHHHHTTGCEEEEESSS---HHHHH-HHHHHTTTEEEES-TT-HHHHHHHHTT--CSEEEEESSCSCCCH
T ss_pred             ccHHHH-HHHHHHHhCCCCcEEEEecc---chhhh-hhhhcccceEeecccCCHHHHHHHHcC--CceEEeecCcchhhh
Confidence            465432 334455556655544 2322   21222 335567999888899999999999975  566777677544333


Q ss_pred             cccHHHHHHHHHhcCCEEEE
Q 013019          312 CVDVKLVSDLCHKKGAIVCI  331 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVV  331 (451)
                      ..-...|++.|++.|+..++
T Consensus        80 ~~~~~~li~Aa~~agVk~~v   99 (233)
T PF05368_consen   80 LEQQKNLIDAAKAAGVKHFV   99 (233)
T ss_dssp             HHHHHHHHHHHHHHT-SEEE
T ss_pred             hhhhhhHHHhhhccccceEE
Confidence            33456789999999987666

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	451
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		1e-153
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		2e-50
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		3e-49
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		3e-49
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		6e-49
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		2e-48
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		9e-42
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		2e-41
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-41
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		4e-41
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		5e-40
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		2e-39
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		2e-39
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		6e-39
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		7e-39
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		6e-38
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		6e-38
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		9e-36
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		6e-35
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		2e-32
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		2e-30
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		1e-28
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		1e-28
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		5e-28
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		9e-26
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		1e-24
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		8e-24

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  537 bits (1383), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/311 (84%), Positives = 288/311 (92%), Gaps = 5/311 (1%)
Query: 124 DDIALVDGL----KNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVN 179
           +D+ALV+      +NVQ ++L  +K  ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVN
Sbjct: 25  EDVALVENETCNDQNVQFDSLPSMKY-ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVN 83
Query: 180 TSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSAST 239
           TSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTVV+EEK+SALEGAEST++MASGM AST
Sbjct: 84  TSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCAST 143
Query: 240 VMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSL 299
           VMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGITATVIDPAD+  LE ALN   V+L
Sbjct: 144 VMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNL 203
Query: 300 FFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFI 359
           FFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFATPLNQKAL+LGADLVLHSATKF+
Sbjct: 204 FFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFL 263
Query: 360 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419
           GGHNDVLAG ISG  KLV++IRNLHH+LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR
Sbjct: 264 GGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 323
Query: 420 MAEILEAHPKV 430
           MAEILEAHPKV
Sbjct: 324 MAEILEAHPKV 334

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/275 (37%), Positives = 160/275 (58%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYXQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGXMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           A+L +RG+KTL +R+++    AL++A  LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  192 bits (489), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/275 (36%), Positives = 159/275 (57%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           A+L +RG+KTL +R+++    AL++A  LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/275 (36%), Positives = 159/275 (57%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
           + +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 SFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           A+L +RG+KTL +R+++    AL++A  LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  191 bits (486), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 101/275 (36%), Positives = 158/275 (57%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
             +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAAKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           A+L +RG+KTL +R+++    AL++A  LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/275 (36%), Positives = 157/275 (57%), Gaps = 5/275 (1%)
Query: 158 IHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEE 217
           +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +E+
Sbjct: 14  VHAGQQPDPS--TGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEK 71
Query: 218 KMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277
           K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI  
Sbjct: 72  KLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINV 131
Query: 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT 337
             +D    E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF +
Sbjct: 132 RFVDAGKPEEIRAAMRPET-KVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMS 190
Query: 338 PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNA 395
           P  Q+ L LGAD+V+HS T +I GH DV+ G I G  + + Q R   L  + GG ++P  
Sbjct: 191 PYCQQPLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFN 250
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           A+L +RG+KTL +R+++    AL++A  LE HP +
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  167 bits (424), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 96/261 (36%), Positives = 146/261 (55%), Gaps = 3/261 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAEILEAHPKV 430
           + +  + A  +AE L   P+V
Sbjct: 266 MDRHCANAQVLAEFLARQPQV 286

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/280 (36%), Positives = 152/280 (54%), Gaps = 17/280 (6%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +LAIH G+       T A+  P+  TS Y      E           FEY R  NPT   
Sbjct: 22  TLAIHGGQSPDPS--TGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRFA 71
Query: 215 VEEKMSALEGAESTVIMASGMSA-STVMLLALVPAGGHIVTTTDCYRKT-RIFIETVLPK 272
            E  ++ALEG       ASGM+A STVM   L+ AG H+V   D Y  T R+F       
Sbjct: 72  YERCVAALEGGTRAFAFASGMAATSTVM--ELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129
Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
            G+  + +D  D    +AA+  +   + + E+PTNP L+ VD+  ++ +  K G +  +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRADT-KMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG--SISGSGKLVTQIRNLHHVLGGA 390
            TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G   +  + +L  Q+  L + +GG 
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248
Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             P  ++L +RG+KTL LR++     AL +A+ LE HP +
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAI 288

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 145/261 (55%), Gaps = 3/261 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSAT ++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAEILEAHPKV 430
           + +  + A  +AE L   P+V
Sbjct: 266 MDRHCANAQVLAEFLARQPQV 286

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 145/261 (55%), Gaps = 3/261 (1%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231
           A+  PV  T+ + F             +A   Y R  NPT  ++E +M++LEG E+ + +
Sbjct: 27  ALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86
Query: 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291
           ASGM A T  L  L+  G  ++     Y  T  F+   + + G+    +D AD++ LEAA
Sbjct: 87  ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAA 146
Query: 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLV 351
           +      ++F ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV
Sbjct: 147 MTPATRVIYF-ESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLV 205
Query: 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           +HSAT ++ GH D+ AG + GS  LV +IR   L  + G  L+P+ A L++RG+KTL+LR
Sbjct: 206 VHSATXYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLR 265
Query: 410 VQQQNSTALRMAEILEAHPKV 430
           + +  + A  +AE L   P+V
Sbjct: 266 MDRHCANAQVLAEFLARQPQV 286

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  162 bits (409), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 136/256 (53%), Gaps = 2/256 (0%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
           P+  TS + F  T +  D    +     Y R GNPT    EE + ++EGA  +    SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
            A +   LA +  G H++     Y  T       LP+ GI   +ID +D+E ++AA   N
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
              + + ESP NP  +  D+K ++ +CH++GA + +D TF +P   K L LGAD+ LHS 
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 356 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
           +K+I GH DV+ G S + + + +  I+      G  + P  A+L  RGMKTL +R+Q   
Sbjct: 204 SKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 415 STALRMAEILEAHPKV 430
              L++A+ LE H K+
Sbjct: 264 ENGLKVAKFLEQHEKI 279

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 131/230 (56%), Gaps = 2/230 (0%)
Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
           + Y RYGNPT  V EE++  +EGA +    ASGM+A    L AL+ AG  +V     +  
Sbjct: 73  YVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGS 132
Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
             +    +LP+ G+    +D  D+   E AL+    ++FF E+P+NP    VD+  V++L
Sbjct: 133 CFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFF-ETPSNPMQSLVDIAAVTEL 191
Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QI 380
            H  GA V +D  FATPL Q+   LG D+V++S T  I G   VL G+I G  + +   +
Sbjct: 192 AHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGRVLGGAILGDREYIDGPV 251
Query: 381 RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           + L    G A++   A+++++G++TL +RVQ  N++A R+AE L  HP V
Sbjct: 252 QKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSV 301

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 135/256 (52%), Gaps = 2/256 (0%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
           P+  TS + F  T +  D    +     Y R GNPT    EE + ++EGA  +    SGM
Sbjct: 25  PIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGM 84
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
            A +   LA +  G H++     Y  T       LP+ GI   +ID +D+E ++AA   N
Sbjct: 85  GAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSA 355
              + + ESP NP  +  D+K ++ +CH++GA + +D TF +P   K L LGAD+ LHS 
Sbjct: 145 T-KMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSV 203
Query: 356 TKFIGGHNDVLAG-SISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
           + +I GH DV+ G S + + + +  I+      G  + P  A+L  RGMKTL +R+Q   
Sbjct: 204 SXYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLPIRMQIHM 263
Query: 415 STALRMAEILEAHPKV 430
              L++A+ LE H K+
Sbjct: 264 ENGLKVAKFLEQHEKI 279

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  158 bits (400), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 145/258 (56%), Gaps = 4/258 (1%)
Query: 176 PVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM 235
           P+  TS + F    +  +    + + + Y R GNPT   +E K++ LE  E+ V  +SGM
Sbjct: 28  PIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGM 87
Query: 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNN 295
            A    +L ++ AG H+++    Y  T    E  L K GI    I+ A    ++  +  N
Sbjct: 88  GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN 147
Query: 296 NVSLFFTESPTNPFLRCVDVKLVSDLCH-KKGAIVCIDGTFATPLNQKALSLGADLVLHS 354
              ++F E+P NP L+ +D++ V    H ++G +V  D TF +P+    +  G D+V+HS
Sbjct: 148 TKIVYF-ETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHS 206
Query: 355 ATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQ 412
           ATK+I GH DV+AG I G   L+ QIR   +  + G  ++P+ A+LI RG+ TL++R++ 
Sbjct: 207 ATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTLNIRMKA 266
Query: 413 QNSTALRMAEILEAHPKV 430
           ++  A+++AE L++HP V
Sbjct: 267 ESENAMKVAEYLKSHPAV 284

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 86/261 (32%), Positives = 149/261 (57%), Gaps = 11/261 (4%)
Query: 171 DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230
           DA++TP+  T+   FK+ + +          ++Y R GNPT   +E  ++ L+ A+    
Sbjct: 102 DAMSTPLYQTAT--FKQPSAI------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFC 153
Query: 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEA 290
             SGM+A +  +  L+  G  IV   D Y  +   +  V+P+ G+    ++   ++ + A
Sbjct: 154 FTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAA 212
Query: 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADL 350
           A+      L + ESPTNP  +  D++ +S++ H +GA+V +D +  +P+  + L LGAD+
Sbjct: 213 AIGPQ-TKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADI 271
Query: 351 VLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR 409
           V+HSATKFI GH+DV+AG ++  G KL  ++  L +  G  L P   +L +RG+KT+ LR
Sbjct: 272 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMALR 331
Query: 410 VQQQNSTALRMAEILEAHPKV 430
           +++Q   A ++A  L +HP+V
Sbjct: 332 IEKQQENARKIAMYLSSHPRV 352

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  155 bits (391), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 159/276 (57%), Gaps = 13/276 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIH G+   +   + A+  P+  ++   FK+ A        + + FEY R GNPT   +E
Sbjct: 23  AIHVGQDPEQW-TSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 73
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           + ++AL+GA+  +  ASG++A TV +  L+ AG  I+   D Y  T  +   V  + G+ 
Sbjct: 74  KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 335
            + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G I+  +D TF
Sbjct: 133 ISFVDCSKIKLLEAAITPET-KLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 191
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 394
            +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S     L  ++R L + LG   +P 
Sbjct: 192 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 251
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             YL  RG+KTLH+R+++     + +A+ LE++P V
Sbjct: 252 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWV 287

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  155 bits (391), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 159/276 (57%), Gaps = 13/276 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIH G+   +   + A+  P+  ++   FK+ A        + + FEY R GNPT   +E
Sbjct: 27  AIHVGQDPEQ-WTSRAVVPPISLSTT--FKQGAP------GQHSGFEYSRSGNPTRNCLE 77
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           + ++AL+GA+  +  ASG++A TV +  L+ AG  I+   D Y  T  +   V  + G+ 
Sbjct: 78  KAVAALDGAKYCLAFASGLAA-TVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 136
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV-CIDGTF 335
            + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G I+  +D TF
Sbjct: 137 ISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTF 195
Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPN 394
            +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S     L  ++R L + LG   +P 
Sbjct: 196 MSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPI 255
Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             YL  RG+KTLH+R+++     + +A+ LE++P V
Sbjct: 256 DCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWV 291

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  147 bits (372), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 97/275 (35%), Positives = 144/275 (52%), Gaps = 11/275 (4%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIH+G R      T A+  P+  +S +       L       R  +EY R GNPT   +E
Sbjct: 22  AIHSGYR--PDPATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRTALE 72
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
             ++A+E A      +SGM+A+   L A++  G H+V   D Y  T   I+ V     + 
Sbjct: 73  AALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
            T +  AD++ + AA+      L + E+PTNP L   D+  ++ L     A V +D TFA
Sbjct: 133 YTPVALADLDAVRAAIRPTT-RLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFA 191
Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGS-ISGSGKLVTQIRNLHHVLGGALNPNA 395
           +P  Q+ LSLGAD+VLHS T +IGGH+DV+ G+ ++   +L      L +  G    P  
Sbjct: 192 SPALQQPLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFD 251
Query: 396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           AYL +RG+KTL LR+Q+ +  A  +AE L  HP +
Sbjct: 252 AYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAI 286

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  145 bits (365), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 148/275 (53%), Gaps = 18/275 (6%)
Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIHAGE +    V  ++  P+  ++ +     A  I        ++EY R  NP    +E
Sbjct: 12  AIHAGEHVD---VHGSVIEPISLSTTFKQSSPANPI-------GTYEYSRSQNPNRENLE 61
Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
             ++ALE A+  +  +SG SA+T  +L  +P G H V+  D Y  T  +   V    G+ 
Sbjct: 62  RAVAALENAQYGLAFSSG-SATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120
Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IVCID 332
            +  +  D+      L   N  L + E+PTNP L+  D++ V+DL  K  A    I+ +D
Sbjct: 121 TSFTN--DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178
Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGAL 391
            TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ + K L  +++ L + +G   
Sbjct: 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIP 238
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEA 426
           +P  A+L  RG+KTLHLRV+Q   +A ++AE L A
Sbjct: 239 SPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAA 273

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 136/262 (51%), Gaps = 16/262 (6%)
Query: 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232
           +  P+  +S Y F        F E R  + +Y R GNPT  VV+  ++ LEG    V+  
Sbjct: 23  VVPPIHLSSTYNFTG------FNEPR--AHDYSRRGNPTRDVVQRALAELEGGAGAVLTN 74
Query: 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAAL 292
           +GMSA  ++    +  G  +V   DCY  +    +++  +       +D  D + L AAL
Sbjct: 75  TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAAL 134
Query: 293 NNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVL 352
                 L   ESP+NP LR VD+  +  L  + GA+  +D TF +P  Q  L+LGADLVL
Sbjct: 135 AEKP-KLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVL 193
Query: 353 HSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHH---VLGGALNPNAAYLIIRGMKTLHL 408
           HS T ++ GH+DV+AG  I+    +VT++    +   V GGA +   +YL++RG++TL  
Sbjct: 194 HSCTXYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFD---SYLLLRGLRTLVP 250
Query: 409 RVQQQNSTALRMAEILEAHPKV 430
           R++     A  + + L+  P V
Sbjct: 251 RMELAQRNAQAIVKYLQTQPLV 272

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 4/219 (1%)
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K G
Sbjct: 3   LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFG 62
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK-LVSDLCHKKGAIVCIDG 333
           +    ID A    +E  L  N   ++F E+P NP L+ +D++  V     +K  +V +D 
Sbjct: 63  VEVDFIDMAVPGNIEKHLKPNTRIVYF-ETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121
Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVLGGAL 391
           TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ ++++  +  + G  +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181
Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           +P+ A+LI RG  TL +RV++    A ++AE L  H  V
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAV 220

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 126/238 (52%), Gaps = 5/238 (2%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
           + RA+ E  YGR G  T   +++ M  LEG    V+   G +A    +LA +  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
           T   Y  ++ F   +L K+G+T +  DP     +   L  N   + F ESP +  +   D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITMEVHD 165
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
           V  +          AI+ ID T+A  +  KAL  G D+ + +ATK++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC 225
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q + ++L++AE L  HP+V
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV 283

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 126/238 (52%), Gaps = 5/238 (2%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
           + RA+ E  YGR G  T   +++ M  LEG    V+   G +A    +LA +  G H++ 
Sbjct: 67  RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 126
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
           T   Y  ++ F   +L K+G+T +  DP     +   L  N   + F ESP +  +   D
Sbjct: 127 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 185
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
           V  +          AI+ ID T+A  +  KAL  G D+ + +ATK++ GH+D + G+   
Sbjct: 186 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVC 245
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q + ++L++AE L  HP+V
Sbjct: 246 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV 303

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 125/238 (52%), Gaps = 5/238 (2%)
Query: 197 KRRASFE--YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVT 254
           + RA+ E  YGR G  T   +++ M  LEG    V+   G +A    +LA +  G H++ 
Sbjct: 47  RNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLM 106
Query: 255 TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD 314
           T   Y  ++ F   +L K+G+T +  DP     +   L  N   + F ESP +  +   D
Sbjct: 107 TNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNT-KIVFLESPGSITMEVHD 165
Query: 315 VKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372
           V  +          AI+ ID T+A  +  KAL  G D+ + +AT ++ GH+D + G+   
Sbjct: 166 VPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVC 225
Query: 373 SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           + +   Q+R   +++G  ++ + AY+  RG++TL +R++Q + ++L++AE L  HP+V
Sbjct: 226 NARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV 283

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 35/309 (11%)
Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +L +HAG       ++  +  P+  T++Y FK      +    +     Y R  NPT  V
Sbjct: 5   TLQLHAGYEPEPTTLSRQV--PIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62
Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L ++G
Sbjct: 63  LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122
Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I        +      AL +     ++ ES  NP L   D++ ++    +KG  + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182
Query: 335 FATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 384
           F       + L+ GA LV HS TK++GGH  V+AG+I   G          L+T+ +  +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242
Query: 385 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
           H L                       G AL P  A++++ GM+TL LR ++     L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302
Query: 422 EILEAHPKV 430
             L   P+V
Sbjct: 303 HWLLEQPQV 311

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 133/283 (46%), Gaps = 22/283 (7%)
Query: 169 VTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAEST 228
           V  A+ TPV + +A+ F+ + E+      R     Y R  NPT   +E+++  L GA   
Sbjct: 41  VHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGV 100
Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
           + + SGM+A +  +L L  AG  +VTT   +  T    +  LP  GI    +D  D   +
Sbjct: 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAV 160
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348
           E A +     L F E+ +NP L+  D++ +S + H KG  + +D T   P   +A  LG 
Sbjct: 161 EHACDETT-KLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGV 219
Query: 349 DLVLHSATKFIGGHNDV------------------LAGSISGSGKLVTQIRNLHHV---L 387
           D+ + S+TKFI G                      LA   + +G +    +    V   L
Sbjct: 220 DIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNL 279
Query: 388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           G +L+P+ AYL   G++T+ LR+++    A  +A  L + P+V
Sbjct: 280 GPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQV 322

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 145/291 (49%), Gaps = 38/291 (13%)
Query: 172 AITTPVVNTSAYFFKKTAELIDFKEKRRASFE---YGRYGNPTTVVVEEKMSALEGAEST 228
           A+  P+   +AY FK   E     ++R A+ E   Y R  +PT   +EE++ ALEGA   
Sbjct: 19  AVGLPIYAVAAYGFKTLEE----GQERFATGEGYVYARQKDPTAKALEERLKALEGALEA 74
Query: 229 VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288
           V++ASG +A+   LLAL+  G  +V     + +T      VL  MG+T   +DP + E +
Sbjct: 75  VVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAV 133
Query: 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLG 347
             AL+    ++ F E+  NP L   D++ ++ L  + G  + +D TF A     + L+ G
Sbjct: 134 REALSAKTRAV-FVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWG 192
Query: 348 ADLVLHSATKFIGGHNDVLAGSISG-----------------SGKLVTQ----------I 380
           A +V+ S T +  GH  VL G++                    G++  +          +
Sbjct: 193 AHVVVESLTXWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERV 252
Query: 381 RNLHHVLGG-ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           R L   L G AL+P  AYL+ +G++T+ LRV + + TA  +AE L+ HPKV
Sbjct: 253 RTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKV 303

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	451
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	1e-137
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	7e-98
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	8e-97
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	4e-95
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	5e-95
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-94
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-93
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	3e-91
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	3e-90
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-86
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	1e-86
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	3e-85
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	7e-83
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	3e-77
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	2e-65
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	5e-61
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	1e-59
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	2e-51
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	8e-51
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	5e-50
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	1e-47
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	9e-42
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	5e-05
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	7e-05
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	7e-05
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	3e-04
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	6e-04

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  399 bits (1028), Expect = e-137
 Identities = 268/334 (80%), Positives = 297/334 (88%), Gaps = 6/334 (1%)

Query: 102 SAAATAASAAPAPPAPVEITSGDDIALVDGL-----KNVQLEALADLKNEASFLSSDGSL 156
           + A  AA+AA A  APV+ T  ++   +        +NVQ ++L  +K  ASFL+SDGS+
Sbjct: 2   AKAVDAAAAAAAAIAPVDTTVVNEDVALVENETCNDQNVQFDSLPSMK-YASFLNSDGSV 60

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVE 216
           AIHAGERLGRGIVTDAITTPVVNTSAYFF KT+ELIDFKEKRRASFEYGRYGNPTTVV+E
Sbjct: 61  AIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLE 120

Query: 217 EKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276
           EK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIFIET+LPKMGIT
Sbjct: 121 EKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGIT 180

Query: 277 ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336
           ATVIDPAD+  LE ALN   V+LFFTESPTNPFLRCVD++LVS LCH+KGA+VCIDGTFA
Sbjct: 181 ATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA 240

Query: 337 TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAA 396
           TPLNQKAL+LGADLVLHSATKF+GGHNDVLAG ISG  KLV++IRNLHH+LGGALNPNAA
Sbjct: 241 TPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAA 300

Query: 397 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV
Sbjct: 301 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 334

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  299 bits (767), Expect = 7e-98
 Identities = 74/277 (26%), Positives = 134/277 (48%), Gaps = 6/277 (2%)

Query: 157 AIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID-FKEKRRASFEYGRYGNPTTVVV 215
            ++AG          A+ + +   S+  F          + +      YGR G  T   +
Sbjct: 30  LVNAGRSKKYT--LGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSL 87

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           ++ M  LEG    V+   G +A    +LA +  G H++ T   Y  ++ F   +L K+G+
Sbjct: 88  QQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV 147

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDG 333
           T +  DP     +   L  N   + F ESP +  +   DV  +          AI+ ID 
Sbjct: 148 TTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 206

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNP 393
           T+A  +  KAL  G D+ + +ATK++ GH+D + G+   + +   Q+R   +++G  ++ 
Sbjct: 207 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDA 266

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           + AY+  RG++TL +R++Q + ++L++AE L  HP+V
Sbjct: 267 DTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV 303

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  295 bits (758), Expect = 8e-97
 Identities = 102/277 (36%), Positives = 159/277 (57%), Gaps = 5/277 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
             +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +
Sbjct: 12  QIVHAGQQ--PDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDAL 69

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E+K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI
Sbjct: 70  EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 129

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D A  E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF
Sbjct: 130 NVRFVDAAKPEEIRAAMRPE-TKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 188

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
            +P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P
Sbjct: 189 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP 248

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             A+L +RG+KTL +R+++    AL++A  LE HP +
Sbjct: 249 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 285

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  290 bits (746), Expect = 4e-95
 Identities = 99/277 (35%), Positives = 149/277 (53%), Gaps = 5/277 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
            AIH G          A+  PV  T+ + F             +A   Y R  NPT  ++
Sbjct: 13  RAIHHGYD--PQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 70

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E +M++LEG E+ + +ASGM A T  L  L+  G  ++     Y  T  F+   + + G+
Sbjct: 71  EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D AD++ LEAA+      + + ESP NP +   D+  V+ +  K GA V +D T+
Sbjct: 131 KLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 189

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
            TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS  LV +IR   L  + G  L+P
Sbjct: 190 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP 249

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           + A L++RG+KTL+LR+ +  + A  +AE L   P+V
Sbjct: 250 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQV 286

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  290 bits (745), Expect = 5e-95
 Identities = 91/278 (32%), Positives = 138/278 (49%), Gaps = 6/278 (2%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            +  +H         V  +   P+  TS + F  T +  D    +     Y R GNPT  
Sbjct: 7   TTTLLHPKGDH----VLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVE 62

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
             EE + ++EGA  +    SGM A +   LA +  G H++     Y  T       LP+ 
Sbjct: 63  QFEEMVCSIEGAAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF 122

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
           GI   +ID +D+E ++AA   N   + + ESP NP  +  D+K ++ +CH++GA + +D 
Sbjct: 123 GIEVDLIDTSDVEKVKAAWKPN-TKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDA 181

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
           TF +P   K L LGAD+ LHS +K+I GH DV+ G  S      +  I+      G  + 
Sbjct: 182 TFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMA 241

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           P  A+L  RGMKTL +R+Q      L++A+ LE H K+
Sbjct: 242 PMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKI 279

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  290 bits (744), Expect = 1e-94
 Identities = 90/276 (32%), Positives = 137/276 (49%), Gaps = 5/276 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
           + +  G         +     +  TS Y +   A            + Y RYGNPT  V 
Sbjct: 30  VGVRGGMLRSG---FEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVF 86

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           EE++  +EGA +    ASGM+A    L AL+ AG  +V     +    +    +LP+ G+
Sbjct: 87  EERLRLIEGAPAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV 146

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D  D+   E AL+       F E+P+NP    VD+  V++L H  GA V +D  F
Sbjct: 147 QTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVF 205

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-NLHHVLGGALNPN 394
           ATPL Q+   LG D+V++S TK I G   VL G+I G  + +      L    G A++  
Sbjct: 206 ATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAF 265

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            A+++++G++TL +RVQ  N++A R+AE L  HP V
Sbjct: 266 NAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSV 301

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  287 bits (737), Expect = 1e-93
 Identities = 90/278 (32%), Positives = 149/278 (53%), Gaps = 7/278 (2%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
             IHA  +  +     A   P+  TS + F    +  +    + + + Y R GNPT   +
Sbjct: 11  ACIHANPQKDQ---FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNL 67

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E K++ LE  E+ V  +SGM A    +L ++ AG H+++    Y  T    E  L K GI
Sbjct: 68  EGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGI 127

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGT 334
               I+ A    ++  +   N  + + E+P NP L+ +D++ V    H + G +V  D T
Sbjct: 128 QVDFINTAIPGEVKKHM-KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNT 186

Query: 335 FATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALN 392
           F +P+    +  G D+V+HSATK+I GH DV+AG I G   L+ QIR   +  + G  ++
Sbjct: 187 FCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVIS 246

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           P+ A+LI RG+ TL++R++ ++  A+++AE L++HP V
Sbjct: 247 PHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAV 284

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  280 bits (720), Expect = 3e-91
 Identities = 98/278 (35%), Positives = 146/278 (52%), Gaps = 11/278 (3%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            + AIH+G R      T A+  P+  +S +       L       R  +EY R GNPT  
Sbjct: 19  ATRAIHSGYRPDP--ATGAVNAPIYASSTFAQDGVGGL-------RGGYEYARTGNPTRT 69

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E  ++A+E A      +SGM+A+   L A++  G H+V   D Y  T   I+ V    
Sbjct: 70  ALEAALAAVEDAAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW 129

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
            +  T +  AD++ + AA+      L + E+PTNP L   D+  ++ L     A V +D 
Sbjct: 130 NVEYTPVALADLDAVRAAIRPT-TRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDN 188

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
           TFA+P  Q+ LSLGAD+VLHS TK+IGGH+DV+ G++  + + L      L +  G    
Sbjct: 189 TFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPG 248

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           P  AYL +RG+KTL LR+Q+ +  A  +AE L  HP +
Sbjct: 249 PFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAI 286

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  278 bits (713), Expect = 3e-90
 Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 12/278 (4%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            ++A+ +G           +  P+  +S Y F    E          + +Y R GNPT  
Sbjct: 6   ATIAVRSGLNDDE--QYGCVVPPIHLSSTYNFTGFNEP--------RAHDYSRRGNPTRD 55

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
           VV+  ++ LEG    V+  +GMSA  ++    +  G  +V   DCY  +    +++  + 
Sbjct: 56  VVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRG 115

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
                 +D  D + L AAL      L   ESP+NP LR VD+  +  L  + GA+  +D 
Sbjct: 116 CYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDN 174

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALN 392
           TF +P  Q  L+LGADLVLHS TK++ GH+DV+AG +      +VT++    + +G    
Sbjct: 175 TFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGG 234

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
              +YL++RG++TL  R++     A  + + L+  P V
Sbjct: 235 AFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLV 272

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  269 bits (690), Expect = 1e-86
 Identities = 88/279 (31%), Positives = 157/279 (56%), Gaps = 13/279 (4%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            + AIH G+       + A+  P+  ++ +      +         + FEY R GNPT  
Sbjct: 20  ATQAIHVGQD-PEQWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRN 70

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E+ ++AL+GA+  +  ASG++A+   +  L+ AG  I+   D Y  T  +   V  + 
Sbjct: 71  CLEKAVAALDGAKYCLAFASGLAATVT-ITHLLKAGDQIICMDDVYGGTNRYFRQVASEF 129

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCID 332
           G+  + +D + ++ LEAA+      L + E+PTNP  + +D++  + + HK G  I+ +D
Sbjct: 130 GLKISFVDCSKIKLLEAAITPE-TKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD 188

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGAL 391
            TF +P  Q+ L+LGAD+ ++SATK++ GH+DV+ G +S + + L  ++R L + LG   
Sbjct: 189 NTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVP 248

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           +P   YL  RG+KTLH+R+++     + +A+ LE++P V
Sbjct: 249 SPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWV 287

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  269 bits (690), Expect = 1e-86
 Identities = 98/280 (35%), Positives = 152/280 (54%), Gaps = 15/280 (5%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            +LAIH G+       T A+  P+  TS Y      E           FEY R  NPT  
Sbjct: 21  ATLAIHGGQSPDP--STGAVMPPIYATSTYAQSSPGE--------HQGFEYSRTHNPTRF 70

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK- 272
             E  ++ALEG       ASGM+A++  ++ L+ AG H+V   D Y  T    E V  + 
Sbjct: 71  AYERCVAALEGGTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT 129

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
            G+  + +D  D    +AA+  +   + + E+PTNP L+ VD+  ++ +  K G +  +D
Sbjct: 130 AGLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD 188

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGS--ISGSGKLVTQIRNLHHVLGGA 390
            TFA+P+ Q+ LSLGADLV+HSATK++ GH+D++ G   +  + +L  Q+  L + +GG 
Sbjct: 189 NTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGV 248

Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             P  ++L +RG+KTL LR++     AL +A+ LE HP +
Sbjct: 249 QGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAI 288

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  267 bits (686), Expect = 3e-85
 Identities = 89/290 (30%), Positives = 157/290 (54%), Gaps = 18/290 (6%)

Query: 142 DLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRAS 201
           ++K EAS      +L ++   +       DA++TP+  T+ +      E           
Sbjct: 80  NIKEEASV----STLLVNLDNKFDP---FDAMSTPLYQTATFKQPSAIE--------NGP 124

Query: 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRK 261
           ++Y R GNPT   +E  ++ L+ A+      SGM+A +  +  L+  G  IV   D Y  
Sbjct: 125 YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGG 183

Query: 262 TRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321
           +   +  V+P+ G+    ++   ++ + AA+      L + ESPTNP  +  D++ +S++
Sbjct: 184 SDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKISEM 242

Query: 322 CHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQI 380
            H +GA+V +D +  +P+  + L LGAD+V+HSATKFI GH+DV+AG ++  G+ L  ++
Sbjct: 243 AHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302

Query: 381 RNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             L +  G  L P   +L +RG+KT+ LR+++Q   A ++A  L +HP+V
Sbjct: 303 YFLQNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRV 352

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  259 bits (664), Expect = 7e-83
 Identities = 89/281 (31%), Positives = 147/281 (52%), Gaps = 18/281 (6%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            + AIHAGE +    V  ++  P+  ++ +     A           ++EY R  NP   
Sbjct: 9   ATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPANP-------IGTYEYSRSQNPNRE 58

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E  ++ALE A+  +  +SG + +   +L  +P G H V+  D Y  T  +   V    
Sbjct: 59  NLERAVAALENAQYGLAFSSGSATTAT-ILQSLPQGSHAVSIGDVYGGTHRYFTKVANAH 117

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA----IV 329
           G+  +  +   +  L   +  N   L + E+PTNP L+  D++ V+DL  K  A    I+
Sbjct: 118 GVETSFTN-DLLNDLPQLIKEN-TKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175

Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLG 388
            +D TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ + K L  +++ L + +G
Sbjct: 176 VVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIG 235

Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPK 429
              +P  A+L  RG+KTLHLRV+Q   +A ++AE L A  +
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKE 276

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  243 bits (622), Expect = 3e-77
 Identities = 74/220 (33%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCID 332
           G+    ID A    +E  L  N   + + E+P NP L+ +D++       K K  +V +D
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGA 390
            TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ +++   +  + G  
Sbjct: 121 NTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAI 180

Query: 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           ++P+ A+LI RG  TL +RV++    A ++AE L  H  V
Sbjct: 181 ISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAV 220

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  215 bits (549), Expect = 2e-65
 Identities = 82/303 (27%), Positives = 136/303 (44%), Gaps = 38/303 (12%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
            A+H  +      V  A+ TPV + +A+ F+ +   A++   +        Y R  NPT 
Sbjct: 30  RALHVPKAKRD--VHGALRTPVYDNAAFEFENSDEIAQVSLGRA---LGHVYSRSSNPTV 84

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
             +E+++  L GA   + + SGM+A +  +L L  AG  +VTT   +  T    +  LP 
Sbjct: 85  EDLEQRLKNLTGALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS 144

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
            GI    +D  D   +E A +     L F E+ +NP L+  D++ +S + H KG  + +D
Sbjct: 145 FGIEVRFVDVMDSLAVEHACDET-TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVD 203

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL---------------- 376
            T   P   +A  LG D+ + S+TKFI G    + G +   G                  
Sbjct: 204 TTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAG 263

Query: 377 ---------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAH 427
                        +N    LG +L+P+ AYL   G++T+ LR+++    A  +A  L + 
Sbjct: 264 PMAFLYKARKEVFQN----LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSI 319

Query: 428 PKV 430
           P+V
Sbjct: 320 PQV 322

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  203 bits (519), Expect = 5e-61
 Identities = 90/311 (28%), Positives = 138/311 (44%), Gaps = 49/311 (15%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
           LA+ AG          A+  P+   +AY FK      E     E     + Y R  +PT 
Sbjct: 6   LAVLAGLPEDP---HGAVGLPIYAVAAYGFKTLEEGQERFATGE----GYVYARQKDPTA 58

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
             +EE++ ALEGA   V++ASG +A+   LLAL+  G  +V     + +T      VL  
Sbjct: 59  KALEERLKALEGALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118

Query: 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID 332
           MG+T   +DP + E +  AL +      F E+  NP L   D++ ++ L  + G  + +D
Sbjct: 119 MGVTVRYVDP-EPEAVREAL-SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVD 176

Query: 333 GTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL--------------- 376
            TF A     + L+ GA +V+ S TK+  GH  VL G++                     
Sbjct: 177 NTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG 236

Query: 377 -----------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALR 419
                               +       G AL+P  AYL+ +G++T+ LRV + + TA  
Sbjct: 237 QIPWEALRARCFPERVRTLGLSL----CGMALSPFNAYLLFQGLETVALRVARMSETARF 292

Query: 420 MAEILEAHPKV 430
           +AE L+ HPKV
Sbjct: 293 LAERLQGHPKV 303

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  200 bits (510), Expect = 1e-59
 Identities = 89/316 (28%), Positives = 138/316 (43%), Gaps = 51/316 (16%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT---AELIDFKEKRRASFEYGRYGNPTT 212
           L +HAG        T +   P+  T++Y FK     A L   KE       Y R  NPT 
Sbjct: 6   LQLHAGYEPEP--TTLSRQVPIYPTTSYVFKSPEHAANLFALKE---FGNIYSRIMNPTV 60

Query: 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK 272
            V+E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L +
Sbjct: 61  DVLEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR 120

Query: 273 MGITATVIDPADM-EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
           +GI        +  E   A   +     ++ ES  NP L   D++ ++    +KG  + +
Sbjct: 121 LGIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIV 179

Query: 332 DGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-------------- 376
           D TF       + L+ GA LV HS TK++GGH  V+AG+I   G                
Sbjct: 180 DNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ 239

Query: 377 ----------------------VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQN 414
                                 V  +R+     G AL P  A++++ GM+TL LR ++  
Sbjct: 240 PGYHGLRLTEAFGELAFIVKARVDGLRD----QGQALGPFEAWVVLLGMETLSLRAERHV 295

Query: 415 STALRMAEILEAHPKV 430
              L +A  L   P+V
Sbjct: 296 ENTLHLAHWLLEQPQV 311

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  178 bits (453), Expect = 2e-51
 Identities = 42/251 (16%), Positives = 83/251 (33%), Gaps = 20/251 (7%)

Query: 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV------- 253
            + Y   G  +   V   +   E A       +G  A    L   +     ++       
Sbjct: 68  GYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPY 127

Query: 254 -TTTDCYRKTRIFIETVLPKMGITATVID----PADMEGLEAALN-NNNVSLFFTESPTN 307
            T  D            L + G+   ++D      D+  ++  L  ++++ L   +  T 
Sbjct: 128 DTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTG 187

Query: 308 ----PFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPLNQKA-LSLGADLVLHSATKFIG 360
                 LR  ++  +        +  IV +D  +   + +K    +GAD++  S  K IG
Sbjct: 188 YGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIG 247

Query: 361 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420
           G      G I+G  + VTQ      V G      + + ++R +             A++ 
Sbjct: 248 GGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEAVKG 307

Query: 421 AEILEAHPKVL 431
           A       ++ 
Sbjct: 308 AVFCARIMELA 318

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  176 bits (449), Expect = 8e-51
 Identities = 45/255 (17%), Positives = 75/255 (29%), Gaps = 24/255 (9%)

Query: 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC 258
              + Y   G  T   V   +   E       + SG  A +  L  ++  G  ++  T  
Sbjct: 57  TTGYGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGK 116

Query: 259 Y-------RKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNNNVSLFFTESP- 305
                      R        +  I    +        D E + AA+++N   +   +   
Sbjct: 117 PYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSN-TKMIGIQRSK 175

Query: 306 ---TNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI 359
              T P      +K +       K   +V +D  +   +  Q+   +GADL+  S  K  
Sbjct: 176 GYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNP 235

Query: 360 GGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH----LRVQQQNS 415
           GG      G I G  + V          G      A+   ++ M            Q   
Sbjct: 236 GGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALK 295

Query: 416 TALRMAEILEAHPKV 430
            A+  A  LE     
Sbjct: 296 GAIFTAAFLEKLGMN 310

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  174 bits (444), Expect = 5e-50
 Identities = 47/259 (18%), Positives = 92/259 (35%), Gaps = 21/259 (8%)

Query: 187 KTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV 246
           +   + +      + + YG  G  +   V  ++   E A       +G  A    L   +
Sbjct: 53  QEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL 112

Query: 247 PAGGHIV--------TTTDCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALN 293
             G  ++        T  D    T       L + GI    +D       ++E +E  L 
Sbjct: 113 RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLK 172

Query: 294 NN-NVSLFFTESPTN----PFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPLN-QKALS 345
            + +++L   +  T       L   D+K + D     +K  I  +D  +   ++ ++   
Sbjct: 173 EDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD 232

Query: 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT 405
           +GADL+  S  K IGG      G ++G+   + +      V G      + + ++R M  
Sbjct: 233 VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQ 292

Query: 406 LHLRVQQQNSTALRMAEIL 424
                   +  AL+ A + 
Sbjct: 293 GLFLAPHISMEALKGAILC 311

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  166 bits (423), Expect = 1e-47
 Identities = 50/256 (19%), Positives = 85/256 (33%), Gaps = 29/256 (11%)

Query: 194 FKEKRRASFEYGRYGNPTTVVVEEKMSAL-------EGAESTVIMASGMSASTVMLLALV 246
           F    +       Y   +     EK++         +  +  V      SA    +LAL 
Sbjct: 40  FLIDEKDKALLNTYIGSS--YFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK 97

Query: 247 PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT 306
           P    I    +      I     +    + A   +   +  +   ++ +   +  T S  
Sbjct: 98  P-KKVIHYLPELPGHPSIERSCKI----VNAKYFESDKVGEILNKIDKD-TLVIITGSTM 151

Query: 307 N-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIG 360
           +   +   + K V +    K AIV +D      +        AL LGADLV+ S  K + 
Sbjct: 152 DLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME 211

Query: 361 GHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALR 419
           G      G ++G  +LV +I       G    P     I R +K  +L R+++    A  
Sbjct: 212 GP---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN 268

Query: 420 MA----EILEAHPKVL 431
                 E L    K +
Sbjct: 269 FDLSKIEKLNKELKAI 284

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  152 bits (385), Expect = 9e-42
 Identities = 40/252 (15%), Positives = 72/252 (28%), Gaps = 28/252 (11%)

Query: 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIV------- 253
            + Y   G  T   V   +   E A     + SG  A + +L  ++     ++       
Sbjct: 53  GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPY 112

Query: 254 -TTTDCYRKTRIFIETVLPKMGITATVID-----PADMEGLEAALNNNNVSLFFTES--- 304
            T  +     +    + L    I  + +        D   +   +      +    S   
Sbjct: 113 DTLEEIVGIRKQGQGS-LKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGY 171

Query: 305 PTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPLN-QKALSLGADLVLHSATKFIGG 361
              P      +K +           IV +D  +   +  Q+   +GAD++  S  K  GG
Sbjct: 172 ADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGG 231

Query: 362 HNDVLAGSISGSGKLVTQIRN------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNS 415
                 G I+G   LV           +    G +L       + +G         Q   
Sbjct: 232 GLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL--LEMYQGFFLAPHVTAQAIK 289

Query: 416 TALRMAEILEAH 427
            A   A +L   
Sbjct: 290 GARFTAAMLAEF 301

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 6e-10
 Identities = 55/433 (12%), Positives = 122/433 (28%), Gaps = 117/433 (27%)

Query: 62  RFPPNFV-R-QLSTKARRNCSNIGVAQIVAASWSNSV----GSGSNSAAATAASAAP--- 112
            F    V R Q   K R+    +  A+ V       +    GSG    A     +     
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVL------IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 113 APPAPVE-ITSG---DDIALVDGLKNVQLEALADLKNEASFLSSDGSLAIHAG-ERLGRG 167
                +  +          +++ L+ +  +   +  + +   SS+  L IH+    L R 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRL 237

Query: 168 ----------IVTDAITTPVVNTSAYFFKKTAELIDFKEK-----RRAS-FEYGRYGNPT 211
                     +V   +             K     +   K     R     ++      T
Sbjct: 238 LKSKPYENCLLVLLNVQNA----------KAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 212 TVVVEEKMSALEGAESTVIMAS--GMSASTV---------MLLALVPAGGHI-VTTTDCY 259
            + ++     L   E   ++          +           L+++       + T D +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 260 RKTRIFIETVLPKMGITATVIDPADMEGL--EAALNNNNV-------SLFFTESPTNPFL 310
           +   +  + +   +  +  V++PA+   +    ++   +        SL + +   +   
Sbjct: 348 KH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--- 402

Query: 311 RCVDVKLVSDLCHKKGAIVC--IDGTFATP-----LNQKALSLGADLVLHSATKFIGGHN 363
              DV +V +  HK   +     + T + P     L  K  +  A   LH     +  +N
Sbjct: 403 ---DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA---LHR--SIVDHYN 454

Query: 364 DVLAGSISGSGKLVTQIRN--LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
             +  +      +   +      H+          +         HL+        +   
Sbjct: 455 --IPKTFDSDDLIPPYLDQYFYSHI---------GH---------HLK-------NIEHP 487

Query: 422 EILEAHPKVLLLF 434
           E +     V L F
Sbjct: 488 ERMTLFRMVFLDF 500

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +  ++    G +   +      A   ++ +L      +V   +C+  + +  E    + G
Sbjct: 59  IHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE----RAG 114

Query: 275 ITATVIDPAD-------MEGLEAALNNN----NVSLFFTESPTNPFLRCVDVKLVSDLCH 323
           +   ++   D        E     +        V L     P   +    DVK ++ +C 
Sbjct: 115 LNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS 174

Query: 324 KKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG 360
           +    + ++G +A   +      +GAD ++ S  K + 
Sbjct: 175 EYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMA 212

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Length = 755

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 38/182 (20%)

Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR----------I 264
           E+  + + GA+ +  +  G S S   ++ A +     +V   +C++             +
Sbjct: 211 EKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPV 270

Query: 265 FIETVLPKMGITATVIDPADM--EGLEAALNNN---------NVSLFFTESPTNPFLRCV 313
           ++     + GI    I P +M  E L+  ++ +           S     + T     C 
Sbjct: 271 YMVPSRNRYGIIGP-IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCY 328

Query: 314 DVKLVSDLCHKKGAIVCID--------------GTFATPLNQKALSLGADLVLHSATKFI 359
           + K   DL  K    +  D                +A        +       HS  K +
Sbjct: 329 NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL 388

Query: 360 GG 361
             
Sbjct: 389 NA 390

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 27/171 (15%)

Query: 209 NPTTVVVE-EKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR--- 263
           +P  V+++  K            + +G ++    ++ +     G I+   + ++      
Sbjct: 54  HPEEVILKSMKQVEKHSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL 113

Query: 264 -------IFIET-VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV 315
                   FIET   P       V          + LNN+   L     P   +    +V
Sbjct: 114 DISQQEGHFIETHQSPLTNHYNKV--------NLSRLNNDGHKLVVLTYPN-YYGETFNV 164

Query: 316 KLVSDLCHKKGAIVCID---GTFAT--PLNQKALSLGADLVLHSATKFIGG 361
           + V    H+    V ID   G            L+  AD V+ S  K +  
Sbjct: 165 EEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPA 215

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 19/173 (10%), Positives = 50/173 (28%), Gaps = 29/173 (16%)

Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYR----------KTRI 264
           E+ ++ +  A+ + ++ +G S +  ++ +   PAG  I+   +C++           T I
Sbjct: 201 EQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPI 260

Query: 265 FIETVLPKMGITATVIDPADMEG------LEAALNNNNVSLFFTESPTNPFLRCVDVKLV 318
           +        GI    I  ++ +       ++   N          + T       +   +
Sbjct: 261 YFRPTRNAYGI-LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST-YDGLLYNTDFI 318

Query: 319 SDLCHKKGAIV-CIDGTFA---------TPLNQKALSLGADLVLHSATKFIGG 361
                 K          +            ++   +         S  K +  
Sbjct: 319 KKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA 371

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* Length = 730

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 23/182 (12%), Positives = 48/182 (26%), Gaps = 37/182 (20%)

Query: 216 EEKMSALEGAESTVIMASGMSAS-TVMLLALVPAGGHIVTTTDCYRKTR----------- 263
           E+  + +  A+ T  +  G S +   +  ALV  G  ++   + ++              
Sbjct: 179 EKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238

Query: 264 IFIETVLPKMGITATVIDPADME----------GLEAALNNNNVSLFFTESPTNPFLRCV 313
           ++++T     G    + D    E            E A       L   +  T       
Sbjct: 239 VYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT-YDGTIY 297

Query: 314 DVKLVSDLCHKKGAIVCID--------------GTFATPLNQKALSLGADLVLHSATKFI 359
           +   V          +  D               +    ++         +V+ S  K  
Sbjct: 298 NAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ 357

Query: 360 GG 361
            G
Sbjct: 358 AG 359

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	451
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	100.0
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	100.0
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.98
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.96
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.93
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.93
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.92
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.92
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.92
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.92
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.92
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.92
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.92
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.91
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.91
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.91
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.91
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.91
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.91
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.91
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.91
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.91
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.91
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.91
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.91
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.9
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.9
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.9
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.9
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.9
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.9
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.9
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.9
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.9
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.9
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.9
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.9
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.9
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.9
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.9
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.9
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.9
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.9
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.89
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.89
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.89
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.89
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.89
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.89
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.89
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.89
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.89
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.89
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.89
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.89
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.89
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.89
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.89
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.89
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.89
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.88
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.88
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.88
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.88
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.88
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.88
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.88
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.88
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.88
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.88
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.88
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.88
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.88
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.88
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.88
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.88
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.88
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.87
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.87
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.87
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.87
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.87
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.87
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.87
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.87
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.87
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.87
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.87
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.87
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.87
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.87
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.87
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.86
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.86
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.86
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.86
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.86
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.86
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.86
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.86
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.86
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.86
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.86
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.86
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.85
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.85
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.85
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.85
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.85
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.85
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.85
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.85
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.85
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.85
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.85
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.85
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.84
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.84
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.84
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.84
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.84
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.83
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.83
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.83
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.83
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.83
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.83
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.83
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.83
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.83
1svv_A	359	Threonine aldolase; structural genomics, structura	99.83
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.82
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.82
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.82
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.82
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.82
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.82
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.82
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.82
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.82
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.82
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.81
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.81
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.81
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.81
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.81
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.81
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.81
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.81
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.8
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.8
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.8
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.8
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.8
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.8
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.8
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.8
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.8
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.79
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.67
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.79
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.79
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.79
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.79
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.78
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.78
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.78
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.78
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.77
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.77
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.77
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.76
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.75
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.74
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.74
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.74
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.74
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.73
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.73
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.73
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.73
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.73
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.73
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.72
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.72
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.72
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.72
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.72
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.72
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.71
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.71
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.71
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.71
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.7
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.7
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.7
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.69
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.68
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.68
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.68
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.67
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.67
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.67
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.66
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.65
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.63
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.61
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.6
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.58
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.56
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.32
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.42
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.38
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.3
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.3
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.29
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.11
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.07
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.87

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=1.5e-49  Score=416.25  Aligned_cols=301  Identities=84%  Similarity=1.228  Sum_probs=276.1

Q ss_pred             hhcccCCCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhC
Q 013019          145 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG  224 (451)
Q Consensus       145 ~~~~~~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~g  224 (451)
                      ++++|+...+|+++|+|...+++..++++.+|||+|+||.|++.++..+.+.++..+|.|+|+++|+.++||++|++++|
T Consensus        49 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g  128 (445)
T 1qgn_A           49 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG  128 (445)
T ss_dssp             CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred             cccccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhC
Confidence            66777654499999999875321357899999999999999999887777766667899999999999999999999999


Q ss_pred             CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCe-EEEEEe
Q 013019          225 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV-SLFFTE  303 (451)
Q Consensus       225 ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~t-klV~le  303 (451)
                      .++.++++||++|+..++.+++++||+||++++.|++++..+...++..|+++.+++..|+++|+++++++ + ++|++|
T Consensus       129 ~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~-tv~lV~le  207 (445)
T 1qgn_A          129 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFTE  207 (445)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEEE
T ss_pred             CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccC-CCCEEEEe
Confidence            99999999999999999999999999999999999999888776778889999999998999999999875 7 999999


Q ss_pred             CCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH
Q 013019          304 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL  383 (451)
Q Consensus       304 sPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~  383 (451)
                      +|+||+|.+.|+++|.++|+++|+++|+|++|+.++.+.++++|+|++++|+||+++|++|+++|+++++++++++++..
T Consensus       208 ~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~  287 (445)
T 1qgn_A          208 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL  287 (445)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred             CCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888899999999999999999988999999999999999888


Q ss_pred             hHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          384 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       384 ~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      +..+|..++++.+|+++++++++..|++++.++++.++++|+++|+|.+|+||++++||++++
T Consensus       288 ~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~  350 (445)
T 1qgn_A          288 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHI  350 (445)
T ss_dssp             HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHH
T ss_pred             HHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHH
Confidence            888898899999999999999999999999999999999999999999999999999997543

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=5.7e-50  Score=417.71  Aligned_cols=294  Identities=28%  Similarity=0.413  Sum_probs=229.2

Q ss_pred             CCCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEE
Q 013019          150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV  229 (451)
Q Consensus       150 ~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~v  229 (451)
                      |.+++|+++|+|...+  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|+++|+.++||++|++++|.+.++
T Consensus        24 m~~~~t~~~h~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v  101 (430)
T 3ri6_A           24 MRGFTTRALHVPKAKR--DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVL  101 (430)
T ss_dssp             -CCHHHHHHCCC----------------------------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             cCCcchhheeCCCCCC--CCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            3458999999997643  35789999999999999999988777666666789999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCc
Q 013019          230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF  309 (451)
Q Consensus       230 v~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPt  309 (451)
                      +++||++|+..++.+++++||+|+++++.|++++..+...+...|+++.+++..|+++|+++++++ +++|++|+|+||+
T Consensus       102 ~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~-t~~v~~e~p~Npt  180 (430)
T 3ri6_A          102 ALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDET-TKLLFLETISNPQ  180 (430)
T ss_dssp             EESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTT
T ss_pred             EECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCC-CeEEEEECCCCCC
Confidence            999999999999999999999999999999999988776778889999999999999999999874 9999999999999


Q ss_pred             cccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe--CHHH-----------
Q 013019          310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG--SGKL-----------  376 (451)
Q Consensus       310 G~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~--~~el-----------  376 (451)
                      |.+.|+++|+++|+++|++||+|++|+.+..++++.+|+|++++|+||+++||+++++|+++.  +.++           
T Consensus       181 G~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~  260 (430)
T 3ri6_A          181 LQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYA  260 (430)
T ss_dssp             CCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHH
T ss_pred             CeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhh
Confidence            999999999999999999999999999998899999999999999999999999999999994  3222           


Q ss_pred             -------HHHHHH-HhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          377 -------VTQIRN-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       377 -------i~~lr~-~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                             +++++. ....+|..++++.+|+++++++++..|++++.+|+++++++|+++|.|++|+||+|++||++++
T Consensus       261 ~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~  338 (430)
T 3ri6_A          261 KAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAI  338 (430)
T ss_dssp             HHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHH
T ss_pred             hhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHH
Confidence                   334332 3456788899999999999999999999999999999999999999999999999999998664

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=6.4e-49  Score=407.80  Aligned_cols=292  Identities=26%  Similarity=0.428  Sum_probs=269.9

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcc-cCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      +++|+++|+|...+  ..++++++|||+|+||.|++.+++.+.+.++ ..+|.|+|+++|+.++||++||+++|++++++
T Consensus        25 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~  102 (415)
T 2fq6_A           25 KLDTQLVNAGRSKK--YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL  102 (415)
T ss_dssp             CHHHHHHHTTCCHH--HHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcCceeEeCCCCCC--CCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Confidence            48899999997643  2478999999999999999998887766554 56799999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++||++|+.+++.+++++||+||++++.|++++..+...++..|+++++++..|+++|+++++++ |++|++|+|+||+|
T Consensus       103 ~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~-tklV~~e~~~NptG  181 (415)
T 2fq6_A          103 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITM  181 (415)
T ss_dssp             ESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTT-EEEEEEESSCTTTC
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccC-CcEEEEECCCCCCC
Confidence            99999999999999999999999999999999988877788889999999999999999999875 99999999999999


Q ss_pred             ccccHHHHHHHHHh--cCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhC
Q 013019          311 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG  388 (451)
Q Consensus       311 ~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G  388 (451)
                      .+.|+++|+++|++  +|+++|+|++|+.++.+.|+++|+|++++|+||++++++++++|+++++++++++++..+...|
T Consensus       182 ~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G  261 (415)
T 2fq6_A          182 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG  261 (415)
T ss_dssp             CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred             EeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcC
Confidence            99999999999999  9999999999999888888999999999999999999998889999999988898888877788


Q ss_pred             CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       389 ~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ..++++.+|+++++++++..|++++.+|++.++++|+++|.|.+|+||+|++||++++
T Consensus       262 ~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~  319 (415)
T 2fq6_A          262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEF  319 (415)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred             CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHH
Confidence            8899999999999999999999999999999999999999999999999999987543

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.5e-48  Score=401.02  Aligned_cols=291  Identities=32%  Similarity=0.502  Sum_probs=271.2

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|...   ..++++.+|||+|+||.|++.+++.+.+.++..+|.|+||++|+.++|+++|++++|.++++++
T Consensus        26 ~~~t~~~~~~~~~---~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~  102 (414)
T 3ndn_A           26 SQATVGVRGGMLR---SGFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFAT  102 (414)
T ss_dssp             CHHHHHHHTTCCC---CTTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeeecCCCC---CCCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEE
Confidence            5899999999764   2478999999999999999999888877777778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++|+++++++ +++|++|+|+||+|.
T Consensus       103 ~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~-t~~v~le~p~NptG~  181 (414)
T 3ndn_A          103 ASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVP-TQAVFFETPSNPMQS  181 (414)
T ss_dssp             SSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSC-CSEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCC-CeEEEEECCCCCCCc
Confidence            9999999999999999999999999999999888877778899999999999999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHH-HHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|++||+|++|+++..+.++.+|+|++++|+||+++++|++++|+++++++.+. +++.....+|..
T Consensus       182 ~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~  261 (414)
T 3ndn_A          182 LVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA  261 (414)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999887778889999999999999999999889999999998876 777777788999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ++++.+|+++++++++..|++++.+|+++++++|+++|.|..|+||+|++||++++
T Consensus       262 ~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~  317 (414)
T 3ndn_A          262 MSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDL  317 (414)
T ss_dssp             CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHH
Confidence            99999999999999999999999999999999999999999999999999998755

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=2.3e-47  Score=394.06  Aligned_cols=285  Identities=35%  Similarity=0.582  Sum_probs=261.6

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      ++++|+++|+|...+  ..++++++|||+++||.|++.+        +..+|.|+|++||+..+||++|++++|.+++++
T Consensus        18 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~--------~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~   87 (400)
T 3nmy_A           18 LSLATLAIHGGQSPD--PSTGAVMPPIYATSTYAQSSPG--------EHQGFEYSRTHNPTRFAYERCVAALEGGTRAFA   87 (400)
T ss_dssp             CCHHHHHHHTTCCCC--TTTCBSSCCBCCCSBBBCSBTT--------BSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCcchheeeCCCCCC--CCCCCcCCCccccceeeccCcc--------ccCCcccccCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            368999999998753  3588999999999999998753        345799999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHh-hhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF  309 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~-l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPt  309 (451)
                      ++||++|+.+ +.+++++||+|+++++.|++++..+... ++..|+++.+++..|+++|+++++++ +++|++|+|+||+
T Consensus        88 ~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~e~~~np~  165 (400)
T 3nmy_A           88 FASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRAD-TKMVWIETPTNPM  165 (400)
T ss_dssp             ESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTT
T ss_pred             ecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccC-CCEEEEECCCCCC
Confidence            9999999988 5778999999999999999998888777 77889999999999999999999874 9999999999999


Q ss_pred             cccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeE-EEE-eCHHHHHHHHHHhHhh
Q 013019          310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SIS-GSGKLVTQIRNLHHVL  387 (451)
Q Consensus       310 G~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG-~Iv-~~~eli~~lr~~~~~~  387 (451)
                      |.+.|+++|.++|+++|+++|+|++|++++.+.++.+|+|++++|+||+++|+++.++| +++ .+++++++++.....+
T Consensus       166 G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~  245 (400)
T 3nmy_A          166 LKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI  245 (400)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH
T ss_pred             CeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988888899999999999999999999988999 555 4778889999888889


Q ss_pred             CCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       388 G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      |..++++.+|+++++++++..|++++.+|++.++++|+++|.|..|+||+|++||++++.
T Consensus       246 g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~  305 (400)
T 3nmy_A          246 GGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLA  305 (400)
T ss_dssp             CCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHH
T ss_pred             CCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHH
Confidence            999999999999999999999999999999999999999999999999999999987653

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=3.7e-45  Score=375.35  Aligned_cols=286  Identities=34%  Similarity=0.529  Sum_probs=264.6

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      ++++|+++|+|..++  ..++++.+|||++++|.+++.+       ....+|.|+|+++|+.++|+++|++++|.+++++
T Consensus        16 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~   86 (392)
T 3qhx_A           16 AGLATRAIHSGYRPD--PATGAVNAPIYASSTFAQDGVG-------GLRGGYEYARTGNPTRTALEAALAAVEDAAFGRA   86 (392)
T ss_dssp             CCHHHHHHHSSCCCC--TTTCBSSCCBCCCSBBCCSSTT-------CCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCcchhheeCCCCCC--CCCCCccCCcccCcceEecCcc-------cccCCccccCCCChHHHHHHHHHHHHhCCCcEEE
Confidence            457999999997753  3578999999999999998753       2334799999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++||++|+..++.+++++||+|+++++.|++++..+...+...|+++.+++..|+++|+++++++ +++|++|+|+||+|
T Consensus        87 ~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG  165 (392)
T 3qhx_A           87 FSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPT-TRLIWVETPTNPLL  165 (392)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred             ECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCC-CeEEEEECCCCCCc
Confidence            99999999999999999999999999999999888877788899999999999999999999874 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCC
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG  389 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~  389 (451)
                      .+.|+++|.++|+++|+++|+|++|+.++.++++.+|+|++++|+||++++++++++|+++++ ++++++++.....+|.
T Consensus       166 ~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~  245 (392)
T 3qhx_A          166 SIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGA  245 (392)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCC
T ss_pred             EEecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999988899999999999999999999998899999997 5888999888888899


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ..+++.+++++++++++..|++++.+++++++++|+++|.|..|+||++++||++.+
T Consensus       246 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~  302 (392)
T 3qhx_A          246 VPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAV  302 (392)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred             CCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999998644

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=4.4e-45  Score=373.82  Aligned_cols=291  Identities=32%  Similarity=0.514  Sum_probs=267.4

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+| . +  ..++++++|||+++||.|++.+++.+.+.+...+|.|+|+++|+..+|+++|++++|.++++++
T Consensus         5 ~~~t~~~~~~-~-~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~   80 (389)
T 3acz_A            5 DITTTLLHPK-G-D--HVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF   80 (389)
T ss_dssp             CHHHHHHSCS-S-C--CSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcceeEEecC-C-C--CCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence            4789999999 3 2  2478999999999999999998888777666678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++++.|++++..+...++..|+++.+++..|+++|+++++++ +++|++|+|+||+|.
T Consensus        81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~  159 (389)
T 3acz_A           81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN-TKMVYLESPANPTCK  159 (389)
T ss_dssp             SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTT-EEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CeEEEEECCCCCCCe
Confidence            9999999999999999999999999999998877766677889999999999999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.++.+.++++|+|++++|+||+++++++.++|++++++ +++++++.....+|..
T Consensus       160 ~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~  239 (389)
T 3acz_A          160 VSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL  239 (389)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred             ecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999988777888899999999999999999977779999998 9999998887778888


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++++.+|+++++++++..|++++.++++.++++|++++.|+.++||+|+++|+..++
T Consensus       240 ~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~  296 (389)
T 3acz_A          240 MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIA  296 (389)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHH
T ss_pred             CCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999876543

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=1.4e-44  Score=372.83  Aligned_cols=283  Identities=32%  Similarity=0.538  Sum_probs=249.1

Q ss_pred             CccccccccCCcCCCCCCC-CCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          152 SDGSLAIHAGERLGRGIVT-DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~-~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      +++|+++|+|...+  ..+ +++.+|||+++||.+++..+        ..+|.|+||+||+..+||++|++++|.+++++
T Consensus        18 ~~~t~~~h~g~~~~--~~~~~~~~~pi~~stt~~~~~~~~--------~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~   87 (403)
T 3cog_A           18 HFATQAIHVGQDPE--QWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRNCLEKAVAALDGAKYCLA   87 (403)
T ss_dssp             THHHHHHHTTCCGG--GSTTCBSSCCBCCCSCBCCC----------------------CHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcccEEEeCCCCCC--cCCCCCccCCeeccceeecCCccc--------cCCCcccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            57899999997643  246 89999999999999887532        12588999999999999999999999989999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++||++|+..++. ++++||+|+++++.|++++..+...++..|+++.+++..|+++|++++++ ++++|++|+|+||+|
T Consensus        88 ~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~-~t~~v~~~~p~nptG  165 (403)
T 3cog_A           88 FASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITP-ETKLVWIETPTNPTQ  165 (403)
T ss_dssp             ESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred             ECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCC
Confidence            9999999999998 89999999999999999888777777888999999998899999999987 499999999999999


Q ss_pred             ccccHHHHHHHHHhcC-CEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhC
Q 013019          311 RCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG  388 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g-~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G  388 (451)
                      .+.|+++|+++|+++| +++|+|++|+.+..+.++.+|+|++++|+||+++|++++++|+++++ ++++++++.....+|
T Consensus       166 ~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g  245 (403)
T 3cog_A          166 KVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG  245 (403)
T ss_dssp             CCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_pred             eeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC
Confidence            9999999999999999 99999999999887788889999999999999999998889999984 788899988888888


Q ss_pred             CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       389 ~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ..++++.+|+++++++++..|++++.+|+..++++|+++|.|+.+.||+|+++|+..+
T Consensus       246 ~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~  303 (403)
T 3cog_A          246 AVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHEL  303 (403)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred             CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHH
Confidence            8899999999999999999999999999999999999999999999999999987654

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=5.2e-42  Score=351.45  Aligned_cols=293  Identities=34%  Similarity=0.501  Sum_probs=238.5

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|...+  ..++++.+|+|+++||.++...+....+.+...+|.|+|+++|..++|+++|++++|.++++++
T Consensus         9 ~~~t~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~   86 (398)
T 1gc0_A            9 GFATRAIHHGYDPQ--DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL   86 (398)
T ss_dssp             CHHHHHHHTTCCGG--GGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcCceeEeCCCCCC--CCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            57899999997643  3578999999999999999877665545555567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++|++++++ ++++|++++|+||+|.
T Consensus        87 ~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~  165 (398)
T 1gc0_A           87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMH  165 (398)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCcc
Confidence            999999999999999999999999999999887776666778999999998899999999987 4999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHH-HHHHHhHh-hCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHV-LGG  389 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-~lr~~~~~-~G~  389 (451)
                      +.|+++|.++|+++|+++|+|++|+.+....++.+|+|+++.|+||+++++++.++|++++++++++ .++..... +|.
T Consensus       166 ~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~  245 (398)
T 1gc0_A          166 MADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA  245 (398)
T ss_dssp             CCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999998776666778899999999999999998777899999988776 56666666 777


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      .+++..+++++++++++..|++++.+|++.++++|+++|.|+.++||+|+++|+.+++
T Consensus       246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~  303 (398)
T 1gc0_A          246 VLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLA  303 (398)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-----------
T ss_pred             CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHH
Confidence            8899999999999999999999999999999999999999999999999999876654

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=1.2e-41  Score=352.27  Aligned_cols=291  Identities=29%  Similarity=0.386  Sum_probs=255.3

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|...+  ..++++.+|||+|+||.+++.++..+.+.++..+|.|+|+.+|+..+|+++|++++|.+.++++
T Consensus         2 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~   79 (421)
T 2ctz_A            2 RFETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALAT   79 (421)
T ss_dssp             CHHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcceeeeeCCCCCC--cCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEe
Confidence            47899999997643  3478999999999999999998877766656668999999999999999999999999889999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe-CCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI-DPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v-d~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      +||++|+..++.+++++||+|+++.+.|+++...+...+...|+++.++ +..|+++|++++++ ++++|++++|+||+|
T Consensus        80 ~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~n~~G  158 (421)
T 2ctz_A           80 ASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPAL  158 (421)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred             cCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhcc-CCeEEEEECCCCCCC
Confidence            9999999999999999999999999999998877655567789999999 88899999999987 499999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCC-CCCCccccccCCCcEEEECCcccCCccccceeEEEEeC--HHH----HHHHH--
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS--GKL----VTQIR--  381 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tf-a~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~--~el----i~~lr--  381 (451)
                      .+.|+++|.++|+++|+++|+|+++ +.++..+++..|+|++++|++|+++++++.+||+++.+  .++    +++++  
T Consensus       159 ~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~  238 (421)
T 2ctz_A          159 NIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEP  238 (421)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSC
T ss_pred             cccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccc
Confidence            9999999999999999999999999 87776778888999999999999999987778888873  222    11221  


Q ss_pred             -----------------------H-HhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCC
Q 013019          382 -----------------------N-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITL  437 (451)
Q Consensus       382 -----------------------~-~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPg  437 (451)
                                             . ....+|..++++.+|+++++++++..|++++.+++++++++|+++|+|+.|.||+
T Consensus       239 ~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~  318 (421)
T 2ctz_A          239 QPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPG  318 (421)
T ss_dssp             BGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTT
T ss_pred             cchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCC
Confidence                                   1 1234677889999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCc
Q 013019          438 LLCFYNGT  445 (451)
Q Consensus       438 L~~~p~~~  445 (451)
                      +++||+++
T Consensus       319 ~~~~~~~~  326 (421)
T 2ctz_A          319 LPHHPHHD  326 (421)
T ss_dssp             STTCTTHH
T ss_pred             CCCCCCHH
Confidence            99888653

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=4.3e-41  Score=346.41  Aligned_cols=292  Identities=30%  Similarity=0.493  Sum_probs=261.9

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      |+++|+++|+|.. +  ..++++.+|+|+++++.++...+..+.+.+....|.|+|.++|+.++|+++|++++|.++.++
T Consensus         6 ~~~~t~~~~~~~~-~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~   82 (404)
T 1e5e_A            6 MTPATACIHANPQ-K--DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVA   82 (404)
T ss_dssp             CCHHHHHHHSSCC-C--CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCccceeeecCCC-C--CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEE
Confidence            4578999999975 3  246899999999999999988776665555566799999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      +++|++|+..++.+++++||+|+++++.|+++...+...++..|+++.+++..|+++|+++++++ +++|++|+|+||+|
T Consensus        83 ~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~-t~~v~l~~p~NptG  161 (404)
T 1e5e_A           83 TSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTL  161 (404)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred             eCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCC-CcEEEEECCCCCCC
Confidence            99999999999999999999999999999998876655677789999999988999999999874 99999999999999


Q ss_pred             ccccHHHHHHHHHh-cCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHH-HHHHHhHhh-
Q 013019          311 RCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-  387 (451)
Q Consensus       311 ~v~DL~~IaelA~~-~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-~lr~~~~~~-  387 (451)
                      .+.|+++|.++|++ +|+++|+|++|+.+....++++|+|++++|+||+++++++.++|++++++++++ +++..+..+ 
T Consensus       162 ~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~  241 (404)
T 1e5e_A          162 KIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDIT  241 (404)
T ss_dssp             CCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCC
T ss_pred             cccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCC
Confidence            99999999999999 999999999999887667778899999999999999998665799999999888 787776666 


Q ss_pred             CCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       388 G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      |..++++.+++++++++++..|++++.+|++.++++|++++.|..+.||+|+++|+..+
T Consensus       242 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~  300 (404)
T 1e5e_A          242 GSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDI  300 (404)
T ss_dssp             CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHH
T ss_pred             CCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHH
Confidence            77789999999999999999999999999999999999999999999999999986543

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=3.3e-41  Score=346.29  Aligned_cols=280  Identities=32%  Similarity=0.516  Sum_probs=251.5

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|.|...+   .++++.+|||+++||.|++.+       .....|.|+|+++|..++|+++|++++|.++.+++
T Consensus         7 ~~~t~~~~~~~~~~---~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~   76 (393)
T 1n8p_A            7 KFATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLAF   76 (393)
T ss_dssp             CHHHHHHHTTCCCC---SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceEEecCCCcc---CCCCcCCCcccccceeecccc-------ccccCcceecCCChhHHHHHHHHHHHhCCCcEEEE
Confidence            57899999997643   478999999999999997643       12246899999999999999999999999899999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +||++|+..++. ++++||+|+++.+.|++++..+...++..|+++.+++..| ++|+++++++ +++|++++|+||+|.
T Consensus        77 ~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~~-t~lv~~~~~~nptG~  153 (393)
T 1n8p_A           77 SSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKEN-TKLVWIETPTNPTLK  153 (393)
T ss_dssp             SCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCSS-EEEEEECSSCTTTCC
T ss_pred             CChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhcccC-ceEEEEECCCCCcce
Confidence            999999999999 9999999999999999888777667788899999998878 9999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhc----CCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHh
Q 013019          312 CVDVKLVSDLCHKK----GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV  386 (451)
Q Consensus       312 v~DL~~IaelA~~~----g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~  386 (451)
                      +.|+++|.++|+++    |+++|+|++|+.+...++..+|+|++++|+||++++++++++|+++++ ++++++++..+..
T Consensus       154 ~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~  233 (393)
T 1n8p_A          154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA  233 (393)
T ss_dssp             CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh
Confidence            99999999999999    999999999987655567778999999999999999988788999985 7899999888777


Q ss_pred             hCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEecCCCCCCCCC
Q 013019          387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPK-VLLLFITLLLCFYNG  444 (451)
Q Consensus       387 ~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~-V~~V~yPgL~~~p~~  444 (451)
                      +|..+++..++++.++++++..|++++.+|++.++++|+++|. +..+.||+++++|++
T Consensus       234 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~  292 (393)
T 1n8p_A          234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNY  292 (393)
T ss_dssp             HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTH
T ss_pred             cCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccH
Confidence            8888899999999999999999999999999999999999998 999999999988764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-39  Score=335.09  Aligned_cols=287  Identities=32%  Similarity=0.455  Sum_probs=253.5

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|...+   .++++++|||++++|.|++.+++.+.+. ...+|.|+|++++..+++++++++++|.++++++
T Consensus         2 ~~~t~~~~~~~~~~---~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~   77 (412)
T 2cb1_A            2 EYTTLAVLAGLPED---PHGAVGLPIYAVAAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGALEAVVL   77 (412)
T ss_dssp             CHHHHHHHTTCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeeecCCCcC---CCCCcCCCccccceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            57899999997642   4789999999999999999988777654 4467899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      ++|++|+..++.+++++||+|+++++.|++++..+...++..|+++.+++. |+++|+++++++ +++|++++|+||+|.
T Consensus        78 ~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~l~~~i~~~-~~~v~~~~~~n~~G~  155 (412)
T 2cb1_A           78 ASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP-EPEAVREALSAK-TRAVFVETVANPALL  155 (412)
T ss_dssp             SSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS-SHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-CHHHHHHHhccC-CeEEEEeCCCCCCcc
Confidence            999999999999999999999999999998887766667778999999886 499999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCcccCCccccceeEEEEeCH----------------
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG----------------  374 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~----------------  374 (451)
                      +.|+++|.++|+++|+++|+|++++.+ +...++..++|+++.|+||+++++++.+||+++.++                
T Consensus       156 ~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~  235 (412)
T 2cb1_A          156 VPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLK  235 (412)
T ss_dssp             CCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC---
T ss_pred             cccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEecccccccccccccccccc
Confidence            999999999999999999999999887 667777889999999999999999877788887773                


Q ss_pred             -----------HHHHHHHHHh-HhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCC
Q 013019          375 -----------KLVTQIRNLH-HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFY  442 (451)
Q Consensus       375 -----------eli~~lr~~~-~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p  442 (451)
                                 ++.++++... ...|..+.+..+++++++++++..+++++.++++.++++|.++|+|..|+||++++||
T Consensus       236 g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p  315 (412)
T 2cb1_A          236 GQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDP  315 (412)
T ss_dssp             ----HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCT
T ss_pred             ccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence                       4556666554 4456677899999999999999999999999999999999999999999999999887


Q ss_pred             CC
Q 013019          443 NG  444 (451)
Q Consensus       443 ~~  444 (451)
                      ++
T Consensus       316 ~~  317 (412)
T 2cb1_A          316 AH  317 (412)
T ss_dssp             TH
T ss_pred             cH
Confidence            54

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=1.1e-38  Score=326.28  Aligned_cols=292  Identities=35%  Similarity=0.583  Sum_probs=256.6

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      ++.|+++|+|...+  ....++..|++.++++.++...+....+.+....|.|+|++++..++|++++++++|.++.+++
T Consensus         8 ~~~t~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~   85 (398)
T 2rfv_A            8 GFNTQIVHAGQQPD--PSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT   85 (398)
T ss_dssp             CHHHHHHHTTCCCC--TTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCceeEeecCCcCc--cCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence            57899999997643  2467899999999999999887765544455567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      ++|++|+..++.+++++||+|+++++.|+++...+...+...|+++.+++..|+++|++++++ ++++|++++|+||+|.
T Consensus        86 ~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~  164 (398)
T 2rfv_A           86 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRP-ETKVVYIETPANPTLS  164 (398)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSBTTTTB
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCc
Confidence            999999999999999999999999999999887765556778999999998899999999987 4999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHH-HHHHHhHhh-CC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-GG  389 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-~lr~~~~~~-G~  389 (451)
                      +.|+++|.++|+++|+++|+|++|+.+....++.+|+|+++.|+||+++++++.++|++++++++++ .++.....+ |.
T Consensus       165 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~  244 (398)
T 2rfv_A          165 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  244 (398)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999877667778899999999999999988666799999998887 677666666 77


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      .++++.++.+.++++.+..+++++.+|++.+.++|++++.|+.+.||+|+++|+.++
T Consensus       245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~  301 (398)
T 2rfv_A          245 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYEL  301 (398)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHH
T ss_pred             CCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHH
Confidence            889999999999999999999999999999999999999999999999998875443

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=2.9e-38  Score=321.44  Aligned_cols=284  Identities=30%  Similarity=0.496  Sum_probs=251.3

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      ++++|+++|.|...+  ..++++.+|||++++|.|++.+        ...+|.|+||++|...+|+++|+++++.++.++
T Consensus         3 ~~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~   72 (386)
T 1cs1_A            3 RKQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFN--------EPRAHDYSRRGNPTRDVVQRALAELEGGAGAVL   72 (386)
T ss_dssp             CCHHHHHHHTTTTCC--TTTCBSSCCBCCCSBBCCSBTT--------BCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCcceeEEecCCCcc--ccCCCCCCCccccceeeccccC--------CCCCcceeCCCCccHHHHHHHHHHHhCCCcEEE
Confidence            357899999997532  3478999999999999987542        235689999999999999999999999889999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      +++|++|+..++.+++++||+|+++++.|++++..+...++..|+++.+++..|+++|+++++++ +++|++++|+||+|
T Consensus        73 ~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG  151 (386)
T 1cs1_A           73 TNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLL  151 (386)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTC-CSEEEEECSCTTTC
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccC-CcEEEEeCCCCCCC
Confidence            99999999999999999999999999999988776656667789999999988999999999874 99999999999999


Q ss_pred             ccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCC
Q 013019          311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGG  389 (451)
Q Consensus       311 ~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~  389 (451)
                      .+.|+++|.++|+++|+++|+|++++.+....++.+++|+++.|++|++++++.+++|++++++ +++++++.....++.
T Consensus       152 ~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~  231 (386)
T 1cs1_A          152 RVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV  231 (386)
T ss_dssp             CCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTC
T ss_pred             cccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999877655667789999999999999988866679999886 888998887777777


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGT  445 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~  445 (451)
                      ..++..++.++++++++..++++..++++.+.++|++++.++.+.+|+|.++|+..
T Consensus       232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~  287 (386)
T 1cs1_A          232 TGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHE  287 (386)
T ss_dssp             BCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHH
T ss_pred             CCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHH
Confidence            78899999888899999889999999999999999999999999999998887543

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=1.5e-36  Score=319.32  Aligned_cols=282  Identities=31%  Similarity=0.553  Sum_probs=248.8

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      .++|.++|.+...   +..+++.+||+++.++.++...        ....|.|+|+++|.++++++++++++|.++++++
T Consensus        86 ~~~~~~i~l~~g~---~~~~~~~~~i~~a~~~~~~~~~--------~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~  154 (464)
T 1ibj_A           86 SVSTLLVNLDNKF---DPFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF  154 (464)
T ss_dssp             CHHHHHTCCCCSS---CTTCCSSCCCCCCSBCCCSSSS--------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CcCCeEEECCCCC---CCCCCCCccHHhhhhhhhhccc--------ccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            4678899987642   1356899999999998765431        2346889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      ++|++|+.+++. ++++||+|+++++.|+++...+...++..|+++.+++..|+++|+++++++ +++|++++|+||+|.
T Consensus       155 ~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~-tk~v~l~~p~NptG~  232 (464)
T 1ibj_A          155 TSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQ  232 (464)
T ss_dssp             SSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSS-EEEEEECSSCTTTCC
T ss_pred             CCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccC-ceEEEEeCCCCCCCE
Confidence            999999988775 889999999999999998776666677889999999988999999999874 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~~  390 (451)
                      +.|+++|.++|+++|+++|+|++|+.+....++++|+|++++|+||+++|++++++|++++++ +++++++..+...|..
T Consensus       233 v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~  312 (464)
T 1ibj_A          233 ISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG  312 (464)
T ss_dssp             CCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCB
T ss_pred             eecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999887666777889999999999999998777889999984 7888888877777888


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ++++.+++++++++++..|++++.+++..++++|++++.++.+.|++|+++|+..+
T Consensus       313 ~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~  368 (464)
T 1ibj_A          313 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHL  368 (464)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHH
T ss_pred             CCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHH
Confidence            89999999999999999999999999999999999999999999999999886543

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=100.00  E-value=1.2e-34  Score=302.04  Aligned_cols=240  Identities=18%  Similarity=0.245  Sum_probs=212.0

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCeEEEcC-CCCcchHHHH-------HH
Q 013019          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFI-------ET  268 (451)
Q Consensus       200 ~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv---~sSG~aAi~~al~all~~GD~VIv~~-~~Y~~t~~~l-------~~  268 (451)
                      .+|.|+|   +.++.||+++|+++|.+.+++   ++||++|+..++.+++++||+|++++ +.|+++..++       ..
T Consensus        66 ~gy~y~~---~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~  142 (427)
T 3i16_A           66 SGYGYGD---IGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMG  142 (427)
T ss_dssp             CTTCTTC---HHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSC
T ss_pred             CCCCCCH---HHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHH
Confidence            3566655   468999999999999999998   89999999999999999999999999 9999988666       24


Q ss_pred             hhhcCCcEEEEeCC-----CCHHHHHHhhcC-CCeEEEEEeC----CCCCccccccHHHHHHHHHh--cCCEEEEecCCC
Q 013019          269 VLPKMGITATVIDP-----ADMEGLEAALNN-NNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFA  336 (451)
Q Consensus       269 ~l~~~Gi~v~~vd~-----~D~d~Le~ai~~-~~tklV~les----PsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa  336 (451)
                      .+...|+++++++.     .|+++|++++++ .++++|++++    |+||+|.+.|+++|+++|++  +|+++++|++|+
T Consensus       143 ~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~  222 (427)
T 3i16_A          143 SLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYG  222 (427)
T ss_dssp             CTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTT
T ss_pred             HHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence            56778999999886     689999999982 2599999999    99999999999999999999  999999999999


Q ss_pred             CCC-ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh--HhhCCCccH-HH-HHHHHHhhHHHHHHHH
Q 013019          337 TPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNP-NA-AYLIIRGMKTLHLRVQ  411 (451)
Q Consensus       337 ~~~-~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~--~~~G~~ls~-~~-a~l~lrgL~tl~~Rl~  411 (451)
                      .+. ..+|+.+|+|++++|+||+++|+++.++|+++++++++++++...  ..+|..+++ ++ ++++++++++++.|++
T Consensus       223 ~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r~~  302 (427)
T 3i16_A          223 EFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHISM  302 (427)
T ss_dssp             TTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHHHH
Confidence            887 678888999999999999999998888999999999999998743  344544455 55 8999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          412 QQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ++.+|+..++++|++++.  .| ||+ ++||.+.+
T Consensus       303 ~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~~  333 (427)
T 3i16_A          303 EALKGAILCSRIMELAGF--EV-MPK-YDEKRSDI  333 (427)
T ss_dssp             HHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS
T ss_pred             HHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCccE
Confidence            999999999999999987  77 999 89998775

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=7.5e-34  Score=295.98  Aligned_cols=239  Identities=17%  Similarity=0.220  Sum_probs=210.2

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCeEEEcC-CCCcchHHHHH-------H
Q 013019          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE-------T  268 (451)
Q Consensus       200 ~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv---~sSG~aAi~~al~all~~GD~VIv~~-~~Y~~t~~~l~-------~  268 (451)
                      .+|.|+|+   .++.||+++|+++|.+.+++   ++||++|+.+++.+++++||+|++.+ +.|+++..++.       .
T Consensus        67 ~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~  143 (427)
T 3hvy_A           67 SGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVG  143 (427)
T ss_dssp             CTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSC
T ss_pred             cCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhh
Confidence            45667665   58999999999999999999   89999999999999999999999999 99998876652       4


Q ss_pred             hhhcCCcEEEEeCC----CCHHHHHHhhc--CCCeEEEEEeC----CCCCccccccHHHHHHHHHh--cCCEEEEecCCC
Q 013019          269 VLPKMGITATVIDP----ADMEGLEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFA  336 (451)
Q Consensus       269 ~l~~~Gi~v~~vd~----~D~d~Le~ai~--~~~tklV~les----PsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa  336 (451)
                      .++..|+++.+++.    .|+++|+++++  + ++|+|++++    |+||+|.+.|+++|+++|++  +|+++++|++|+
T Consensus       144 ~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~-~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~  222 (427)
T 3hvy_A          144 SLREYGVKYKMVDLKDGKVDINTVKEELKKDD-SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYG  222 (427)
T ss_dssp             CTGGGTCEEEECCCBTTBCCHHHHHHHHHHCT-TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred             HHHHcCCEEEEecCCCCCcCHHHHHHHhhCCC-CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            56678999999987    79999999998  5 599999999    99999999999999999999  899999999999


Q ss_pred             CCC-ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCcc--HHHHHHHHHhhHHHHHHHH
Q 013019          337 TPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALN--PNAAYLIIRGMKTLHLRVQ  411 (451)
Q Consensus       337 ~~~-~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls--~~~a~l~lrgL~tl~~Rl~  411 (451)
                      .+. ..+|+.+|+|++++|+||+++|+++.+||+++++++++++++....  .+|..++  ...++++++++++++.|++
T Consensus       223 ~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~~  302 (427)
T 3hvy_A          223 EFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTI  302 (427)
T ss_dssp             TTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHHH
Confidence            887 6788899999999999999999988889999999999999987542  3332222  2348999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          412 QQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      ++.+|+..++++|++++.  .| ||+ ++||.+.+
T Consensus       303 ~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~l  333 (427)
T 3hvy_A          303 EAVKGAVFCARIMELAGF--DV-LPK-YNDKRTDI  333 (427)
T ss_dssp             HHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS
T ss_pred             HHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCceE
Confidence            999999999999999986  67 899 88988775

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=100.00  E-value=2.2e-33  Score=290.84  Aligned_cols=239  Identities=15%  Similarity=0.170  Sum_probs=206.9

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCeEEEcC-CCCcchHHHHH------Hh
Q 013019          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TV  269 (451)
Q Consensus       200 ~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv---~sSG~aAi~~al~all~~GD~VIv~~-~~Y~~t~~~l~------~~  269 (451)
                      .+|.|+|   +.++.||+++|+++|.+.+++   ++||++|+..++.+++++||+|++++ +.|+++...+.      ..
T Consensus        52 ~~~~y~~---~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~  128 (409)
T 3jzl_A           52 TGYGYDD---EGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGS  128 (409)
T ss_dssp             CTTCTTC---HHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSC
T ss_pred             cCCCCCh---hHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhH
Confidence            4556654   568999999999999999998   88999999999999999999999998 99998876553      45


Q ss_pred             hhcCCcEEEEeCC-----CCHHHHHHhhcCCCeEEEEEeC----CCCCccccccHHHHHHHHHh--cCCEEEEecCCCCC
Q 013019          270 LPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATP  338 (451)
Q Consensus       270 l~~~Gi~v~~vd~-----~D~d~Le~ai~~~~tklV~les----PsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~  338 (451)
                      ++..|+++.+++.     .|+++|+++++++ +++|++++    |+||+|.+.|+++|.++|++  +|+++++|++|+.+
T Consensus       129 l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~-tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~  207 (409)
T 3jzl_A          129 LKDFHIGYSSVPLLENGDVDFPRIAKKMTPK-TKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEF  207 (409)
T ss_dssp             TGGGTCEEEECCCCTTSCCCHHHHHHHCCTT-EEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTT
T ss_pred             HHHcCCEEEEeCCCCCCCcCHHHHHHhccCC-CeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccc
Confidence            6778999999987     6899999999874 99999999    99999999999999999999  99999999999988


Q ss_pred             C-ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCc--cHHHHHHHHHhhHHHHHHHHHH
Q 013019          339 L-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGAL--NPNAAYLIIRGMKTLHLRVQQQ  413 (451)
Q Consensus       339 ~-~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~l--s~~~a~l~lrgL~tl~~Rl~~~  413 (451)
                      + ..++..+|+|++++|+||+++|+++.+||+++++++++++++..+..  +|...  ....++++++++++++.|++++
T Consensus       208 ~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~~~r~~~~  287 (409)
T 3jzl_A          208 VEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQA  287 (409)
T ss_dssp             TSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhHHHHHHHH
Confidence            6 57888899999999999999999888899999999999998875432  22111  1112567889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          414 NSTALRMAEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       414 ~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      .+|+..++++|++++.  .| ||+ ++||++.+
T Consensus       288 ~~~a~~la~~L~~~g~--~v-~p~-~~~~~~~~  316 (409)
T 3jzl_A          288 IKGARFTAAMLAEFGV--EA-DPV-WDAPRTDL  316 (409)
T ss_dssp             HHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS
T ss_pred             HHHHHHHHHHHHhCCC--cc-cCC-CCCCCccE
Confidence            9999999999999986  67 899 88888765

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.98  E-value=4.1e-31  Score=261.92  Aligned_cols=231  Identities=32%  Similarity=0.495  Sum_probs=206.1

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhc
Q 013019          214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN  293 (451)
Q Consensus       214 ~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~  293 (451)
                      +|+++|++++|.++.+++++|++|+..++.+++++||+|+++++.|.++...+...++..|+++.+++..|+++++++++
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~   81 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence            68999999999999999999999999999999999999999999999987666554567899999999889999999998


Q ss_pred             CCCeEEEEEeCCCCCccccccHHHHHHHHHh-cCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe
Q 013019          294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG  372 (451)
Q Consensus       294 ~~~tklV~lesPsNPtG~v~DL~~IaelA~~-~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~  372 (451)
                      ++ +++|++++|+||+|.+.|+++|.++|++ +|+++|+|++|+.+....++++|+|+++.|++|++++++..++|++++
T Consensus        82 ~~-~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~  160 (331)
T 1pff_A           82 PN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS  160 (331)
T ss_dssp             TT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred             CC-CeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEe
Confidence            74 9999999999999999999999999999 999999999998765445667889999999999999988555899999


Q ss_pred             CH-HHHHHHHHHhHh-hCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCc
Q 013019          373 SG-KLVTQIRNLHHV-LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGT  445 (451)
Q Consensus       373 ~~-eli~~lr~~~~~-~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~  445 (451)
                      ++ +++++++..... +|...++..++.+.++++++..|+++..+++..+.++|++++.+..+++++|.++|+..
T Consensus       161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~  235 (331)
T 1pff_A          161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHE  235 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHH
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHH
Confidence            98 898888877666 66778888999888999999999999999999999999999999999999998887543

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.96  E-value=6.3e-28  Score=251.43  Aligned_cols=235  Identities=18%  Similarity=0.199  Sum_probs=195.7

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEE---eCCHHHHHHHHHHHHccCCCeEEEcC-CCCcchHHHHH------HhhhcCCcE
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TVLPKMGIT  276 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv---~sSG~aAi~~al~all~~GD~VIv~~-~~Y~~t~~~l~------~~l~~~Gi~  276 (451)
                      |+++.+++|++++++++|.+.+++   ++||++|+..++.+++++||+|++++ +.|+.+...+.      ..++..|++
T Consensus        62 y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~  141 (431)
T 3ht4_A           62 YDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIG  141 (431)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCE
T ss_pred             CChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCE
Confidence            456779999999999999988776   88999999999999999999999998 99998776553      345678999


Q ss_pred             EEEeCC-----CCHHHHHHhhcCCCeEEEEEeC-CCCC---ccccccHHHHHHHHHh--cCCEEEEecCCCCCC-ccccc
Q 013019          277 ATVIDP-----ADMEGLEAALNNNNVSLFFTES-PTNP---FLRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKAL  344 (451)
Q Consensus       277 v~~vd~-----~D~d~Le~ai~~~~tklV~les-PsNP---tG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~-~~~pl  344 (451)
                      +.+++.     .|+++|++++++ ++++|++++ |+||   +|...|+++|.++|++  +|+++++|++|+.+. ..++.
T Consensus       142 ~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~  220 (431)
T 3ht4_A          142 YNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC  220 (431)
T ss_dssp             EEECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred             EEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence            999886     489999999987 499999995 5555   5556689999999999  999999999998875 46788


Q ss_pred             cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccH--HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 013019          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRM  420 (451)
Q Consensus       345 ~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~--~~a~l~lrgL~tl~~Rl~~~~~nA~~L  420 (451)
                      .+|+|+++.|++|+++|+.+..||+++++++++++++.....  +|...++  ..++++++++++++.|++++.+++..+
T Consensus       221 ~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l  300 (431)
T 3ht4_A          221 HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFT  300 (431)
T ss_dssp             GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence            889999999999999997667789999999999998875543  2322222  236778899999999999999999999


Q ss_pred             HHHHHcCCCeEEEecCCCCCCCCCcc
Q 013019          421 AEILEAHPKVLLLFITLLLCFYNGTL  446 (451)
Q Consensus       421 ae~L~~~p~V~~V~yPgL~~~p~~~l  446 (451)
                      +++|++++.  .| ||+ +++|.+++
T Consensus       301 ~~~L~~~g~--~v-~p~-~~~~~~~l  322 (431)
T 3ht4_A          301 AAFLEKLGM--NT-SPA-WNAPRTDL  322 (431)
T ss_dssp             HHHHHHHTC--CE-ESC-TTSCCSSS
T ss_pred             HHHHHhCcC--Ee-cCC-CCCCCccE
Confidence            999999875  45 787 67776654

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.93  E-value=1.3e-24  Score=218.51  Aligned_cols=220  Identities=12%  Similarity=0.162  Sum_probs=173.9

Q ss_pred             CchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          208 GNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      ..+...+|++.++++++   .++.+++++|++|+..++.+++++||+|+++.+.|.++...    +...|.++..++.  
T Consensus        61 ~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~  136 (375)
T 3op7_A           61 WIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDI----PKSLGAEVDLWQIEE  136 (375)
T ss_dssp             CTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHH----HHHTTCEEEEEEEEG
T ss_pred             CCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEEeccc
Confidence            34556789999999874   36788888888999999999999999999999999987644    3456777766653  


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc---c-ccCCCcE
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---A-LSLGADL  350 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~---p-l~~GaDi  350 (451)
                           .|+++|++++++ ++++|++++|+||+|.+.+   +++|.++|++||+++|+|++|+......   . -..+.++
T Consensus       137 ~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i  215 (375)
T 3op7_A          137 ENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGI  215 (375)
T ss_dssp             GGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEE
T ss_pred             cCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEE
Confidence                 289999999987 4999999999999999999   9999999999999999999987632211   0 1235679


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHc
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL----RVQQQNSTALRMAEILEA  426 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~----Rl~~~~~nA~~Lae~L~~  426 (451)
                      ++.|+||.++.+| .++|+++++++++++++..+...+...++..++++...++....    +.++..++++.+.+.|++
T Consensus       216 ~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  294 (375)
T 3op7_A          216 AVNSLSKTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEE  294 (375)
T ss_dssp             EEEESSSSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeEChhhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998665 56899999999999998877766666677776666555554332    334447788889999999


Q ss_pred             CCCeEEE
Q 013019          427 HPKVLLL  433 (451)
Q Consensus       427 ~p~V~~V  433 (451)
                      +|++..+
T Consensus       295 ~~~~~~~  301 (375)
T 3op7_A          295 EPLVSYI  301 (375)
T ss_dssp             CTTEEEC
T ss_pred             CCCceEe
Confidence            8888654

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.93  E-value=2.2e-23  Score=210.18  Aligned_cols=212  Identities=12%  Similarity=0.124  Sum_probs=172.1

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+...+|+++|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+...    +...|.++..++..|+++|
T Consensus        83 ~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l  158 (384)
T 1bs0_A           83 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHNDVTHL  158 (384)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHH----HHHcCCCEEEeCCCCHHHH
Confidence            377889999999999998899999999999999999999999999999999976643    3456889888988899999


Q ss_pred             HHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-------ccccCCCcEEEECCcccC
Q 013019          289 EAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALSLGADLVLHSATKFI  359 (451)
Q Consensus       289 e~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-------~pl~~GaDiVv~S~SK~l  359 (451)
                      ++++++.  ++++|++++|+||||.+.++++|.++|+++|+++|+|++|+.+...       ..+..+.|+++.|+||++
T Consensus       159 ~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~  238 (384)
T 1bs0_A          159 ARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF  238 (384)
T ss_dssp             HHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred             HHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh
Confidence            9999753  3799999999999999999999999999999999999998765321       112245899999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHhHhh--CCCccHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHcCC
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLHHVL--GGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~~~~--G~~ls~~~a~l~lrgL~tl-----~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      +..    ||+++++++++++++.....+  +...++..+..+...++.+     ..+.++..++++.+.+.|++++
T Consensus       239 ~~~----GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  310 (384)
T 1bs0_A          239 GVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP  310 (384)
T ss_dssp             SSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             hcc----CcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            854    599999999998887653222  3346676665555444433     3556777788999999998873

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.92  E-value=9e-24  Score=209.89  Aligned_cols=216  Identities=19%  Similarity=0.215  Sum_probs=167.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----C
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A  283 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----~  283 (451)
                      .++...+|+++|++++|.+..+++++|++|+.+++.+++++||+|+++++.|..++... ......|+++..++.    .
T Consensus        36 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~  114 (347)
T 1jg8_A           36 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAM  114 (347)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEE
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chhhccCeEEEEecCCCCcc
Confidence            57888999999999999999999999999999999999999999999999997654311 123445777766621    3


Q ss_pred             CHHHHHHhhcC-----CCeEEEEEeCCCCCc-ccccc---HHHHHHHHHhcCCEEEEecCCCC------CCccccccCCC
Q 013019          284 DMEGLEAALNN-----NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGA  348 (451)
Q Consensus       284 D~d~Le~ai~~-----~~tklV~lesPsNPt-G~v~D---L~~IaelA~~~g~~lVVD~tfa~------~~~~~pl~~Ga  348 (451)
                      |+++|++++++     .++++|++++|+||| |.+.+   +++|.++|+++|+++|+|+++..      +....++..++
T Consensus       115 d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~  194 (347)
T 1jg8_A          115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA  194 (347)
T ss_dssp             CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred             CHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccc
Confidence            89999999975     159999999999999 99875   57889999999999999998531      22222333468


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc--cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l--s~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      |.++.|+||+++++   .||+++++++++++++..+..+|...  ....+++...+++....++++..++++.+.+.|++
T Consensus       195 d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  271 (347)
T 1jg8_A          195 DSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE  271 (347)
T ss_dssp             SEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98899999999875   46678889999998887776666443  44555555566665544566666788888999987


Q ss_pred             C
Q 013019          427 H  427 (451)
Q Consensus       427 ~  427 (451)
                      +
T Consensus       272 ~  272 (347)
T 1jg8_A          272 I  272 (347)
T ss_dssp             H
T ss_pred             c
Confidence            6

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.92  E-value=6.3e-24  Score=215.49  Aligned_cols=227  Identities=15%  Similarity=0.167  Sum_probs=174.4

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHH----ccCCCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~al----l~~GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      +.|++...+...+++++|++++|.   ++.+++++|++|+..++.++    +++||+|+++++.|.++...+...+...|
T Consensus        64 ~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g  143 (420)
T 1t3i_A           64 HQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG  143 (420)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC
Confidence            334432346678899999999998   67888888999999999999    89999999999999997544444555678


Q ss_pred             cEEEEeCC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCC
Q 013019          275 ITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGA  348 (451)
Q Consensus       275 i~v~~vd~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~Ga  348 (451)
                      +++..++.     .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+... ....+|.
T Consensus       144 ~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~  222 (420)
T 1t3i_A          144 AVLKFVQLDEQESFDLEHFKTLLSEK-TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDC  222 (420)
T ss_dssp             CEEEEECBCTTSSBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTC
T ss_pred             cEEEEeccCCCCCcCHHHHHHhhCCC-ceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCC
Confidence            88888764     4799999999874 999999999999999999999999999999999999998765332 3334589


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--------------------hCCCccHHHHHHHHH-hhHH--
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------LGGALNPNAAYLIIR-GMKT--  405 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--------------------~G~~ls~~~a~l~lr-gL~t--  405 (451)
                      |+++.|+||.+++++   +|+++++++++++++.....                    +....++..+++++. .++.  
T Consensus       223 di~~~s~sK~~~~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~  299 (420)
T 1t3i_A          223 DWLVASGHKMCAPTG---IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT  299 (420)
T ss_dssp             SEEEEEGGGTTSCTT---CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEehhhhcCCCc---eEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence            999999999887765   79999999888877643321                    111223333333222 3333  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          406 ---LHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       406 ---l~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                         +....++..++++.+.+.|++.|+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  329 (420)
T 1t3i_A          300 DLGMENIHNYEVELTHYLWQGLGQIPQLRL  329 (420)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence               344567777889999999999888754

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.92  E-value=4.1e-23  Score=208.36  Aligned_cols=213  Identities=17%  Similarity=0.168  Sum_probs=172.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      ..+...+|++++++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+..    .+...|.++..++..|+++
T Consensus        86 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~  161 (399)
T 3tqx_A           86 TQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIID----GIRLCKAQRYRYKNNAMGD  161 (399)
T ss_dssp             CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHSCCSEEEEECTTCTTH
T ss_pred             CchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHH----HHHHcCCceeEeCCCCHHH
Confidence            356789999999999999999999999999999999999999999999999998664    3456788888888888899


Q ss_pred             HHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc-------ccc--CCCcEEEE
Q 013019          288 LEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------ALS--LGADLVLH  353 (451)
Q Consensus       288 Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~-------pl~--~GaDiVv~  353 (451)
                      |++++++.     ++++|++++|+||||.+.++++|.++|+++|+++|+|++|+.++...       ...  .+.|+++.
T Consensus       162 l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~  241 (399)
T 3tqx_A          162 LEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTG  241 (399)
T ss_dssp             HHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEE
T ss_pred             HHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEe
Confidence            99888751     48999999999999999999999999999999999999986443211       111  25799999


Q ss_pred             CCcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHcC
Q 013019          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       354 S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrgL~tl----~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      |+||+++|.   .||++++++++++.++.....  +....++..+..+...++.+    ....++..++.+.+.+.|+++
T Consensus       242 s~sK~~~g~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (399)
T 3tqx_A          242 TLGKALGGA---SGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL  318 (399)
T ss_dssp             ESSSSSCSS---CCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHhcccC---ceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            999999954   479999999999988875432  34456676655555555544    455667778888888888875

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.92  E-value=2.6e-23  Score=210.87  Aligned_cols=212  Identities=19%  Similarity=0.195  Sum_probs=174.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+...+|+++|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+..    .+...|+++..++..|+++|
T Consensus        89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l  164 (401)
T 1fc4_A           89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIID----GVRLCKAKRYRYANNDMQEL  164 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHH----HHHHcCCceEEECCCCHHHH
Confidence            67789999999999998889999999999999999999999999999999987654    34567899888888899999


Q ss_pred             HHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc---c------cccCCCcEEEEC
Q 013019          289 EAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---K------ALSLGADLVLHS  354 (451)
Q Consensus       289 e~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~---~------pl~~GaDiVv~S  354 (451)
                      ++++++.     ++++|++++|+||||.+.++++|.++|+++|+++|+|++|+.++..   .      .+..+.|+++.|
T Consensus       165 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s  244 (401)
T 1fc4_A          165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEec
Confidence            9988641     4899999999999999999999999999999999999999643321   1      122357999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +||++++..   ||+++++++++++++....  .++..+++..++.+...++.+   ....++..++++.+.+.|+++
T Consensus       245 ~sK~~~~~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  319 (401)
T 1fc4_A          245 LGKALGGAS---GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA  319 (401)
T ss_dssp             SSSTTCSSS---CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhhccCCC---CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            999995543   5999999999998887542  235567787777777777665   355677788899999999886

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.92  E-value=4.6e-23  Score=206.31  Aligned_cols=221  Identities=12%  Similarity=0.146  Sum_probs=173.4

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+++...+|++++++++|.  ++.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.++..++
T Consensus        61 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~  136 (363)
T 3ffh_A           61 TEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQN----ALIEGAEVREIP  136 (363)
T ss_dssp             CCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHH----HHHHTCEEEEEE
T ss_pred             hhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHH----HHHcCCEEEEec
Confidence            4556777788999999999985  5677888888999999999999999999999999886543    445688888776


Q ss_pred             CC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCCc-------cccccCC
Q 013019          282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-------QKALSLG  347 (451)
Q Consensus       282 ~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~~-------~~pl~~G  347 (451)
                      ..     |+++|+++++++ +++|++++|+||||.+.++++|.++++.+  |+++|+|++|+....       ......+
T Consensus       137 ~~~~~~~d~~~l~~~i~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  215 (363)
T 3ffh_A          137 LLQDGEHDLEGMLNAIDEK-TTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYK  215 (363)
T ss_dssp             CCTTSCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCT
T ss_pred             CCCCCCcCHHHHHHhcccC-CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCC
Confidence            54     899999999874 99999999999999999999999999887  999999999873221       1111234


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      .++++.|+||.++.+| .++|+++++++++++++.....+  ..++..++.+...+   +.+..+.++..++.+.+.+.|
T Consensus       216 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  292 (363)
T 3ffh_A          216 NLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIVRPPF--NTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA  292 (363)
T ss_dssp             TEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHTCCSC--CCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeechhhhcCch-hceeeeecCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999998666 56799999999999988766533  45666666555554   556667778888899999999


Q ss_pred             HcCCCeEE
Q 013019          425 EAHPKVLL  432 (451)
Q Consensus       425 ~~~p~V~~  432 (451)
                      ++++++..
T Consensus       293 ~~~~g~~~  300 (363)
T 3ffh_A          293 KRFEKVKL  300 (363)
T ss_dssp             HHCTTCEE
T ss_pred             hhCCCceE
Confidence            99777753

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.92  E-value=6.7e-23  Score=206.29  Aligned_cols=227  Identities=18%  Similarity=0.177  Sum_probs=171.7

Q ss_pred             CccccCCCchhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      .+.|+....+.++++.+.+++.+|    .++.+++++|++|+..++.+++++||+|+++.+.|.++...    +...|.+
T Consensus        57 ~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~  132 (391)
T 3dzz_A           57 AFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSV----IEGNGRR  132 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHH----HHHTTCE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHH----HHHcCCE
Confidence            456666555667778888888777    35677777778999999999999999999999999986643    4456888


Q ss_pred             EEEeCC--------CCHHHHHHhhcCCCeEEEEEeCCCCCcccc---ccHHHHHHHHHhcCCEEEEecCCCCCCc-----
Q 013019          277 ATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN-----  340 (451)
Q Consensus       277 v~~vd~--------~D~d~Le~ai~~~~tklV~lesPsNPtG~v---~DL~~IaelA~~~g~~lVVD~tfa~~~~-----  340 (451)
                      +..++.        .|+++|++++++.++++|++++|+||||.+   .++++|.++|+++|+++|+|++|+....     
T Consensus       133 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~  212 (391)
T 3dzz_A          133 VISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDI  212 (391)
T ss_dssp             EEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred             EEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCc
Confidence            777764        689999999984459999999999999999   6789999999999999999999874321     


Q ss_pred             cccccCC---Cc--EEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhC-CCccHHHHHHHHHhhH----HHHHH
Q 013019          341 QKALSLG---AD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGMK----TLHLR  409 (451)
Q Consensus       341 ~~pl~~G---aD--iVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G-~~ls~~~a~l~lrgL~----tl~~R  409 (451)
                      .....++   .|  +++.|+||.++.+| .++|+++++ ++++++++......+ ...++..++.+...++    .+..+
T Consensus       213 ~~~~~~~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  291 (391)
T 3dzz_A          213 TPAFTVDWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLREL  291 (391)
T ss_dssp             CCGGGSCTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHHH
T ss_pred             eehhhcCccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHHH
Confidence            1112222   45  99999999997555 468898886 889888887654333 2344444443333333    35666


Q ss_pred             HHHHHHHHHHHHHHHHc-CCCeEE
Q 013019          410 VQQQNSTALRMAEILEA-HPKVLL  432 (451)
Q Consensus       410 l~~~~~nA~~Lae~L~~-~p~V~~  432 (451)
                      .++..++++.+.+.|++ .|++..
T Consensus       292 ~~~~~~~~~~l~~~l~~~~~~~~~  315 (391)
T 3dzz_A          292 KQVLRDNFAYAREFLAKEVPEVKV  315 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcEE
Confidence            77788889999999998 787753

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.92  E-value=4.9e-24  Score=216.83  Aligned_cols=205  Identities=23%  Similarity=0.213  Sum_probs=168.9

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          212 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       212 ~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+.+++.+++++|.   ++.+++++|++|+..++.++  +||+|+++++.|++++..+. .+...|+++.++  .|+++|
T Consensus        60 ~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l  134 (374)
T 2aeu_A           60 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEI  134 (374)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHH
T ss_pred             HHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHH
Confidence            34677777788898   77888999999999999987  99999999999988776554 556779988888  689999


Q ss_pred             HHhhcCCCeEE-EEEeCCCCCcc-ccccHHHHHHHHHhcCCEEEEecCCCCCC----ccc-cccCCCcEEEECCcccCCc
Q 013019          289 EAALNNNNVSL-FFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGTFATPL----NQK-ALSLGADLVLHSATKFIGG  361 (451)
Q Consensus       289 e~ai~~~~tkl-V~lesPsNPtG-~v~DL~~IaelA~~~g~~lVVD~tfa~~~----~~~-pl~~GaDiVv~S~SK~l~G  361 (451)
                      +++ ++ ++++ |++++|+||+| ...++++|.++|+++|+++|+|++++...    ... ++.++.|+++.|+||+++|
T Consensus       135 ~~~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g  212 (374)
T 2aeu_A          135 LNK-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  212 (374)
T ss_dssp             HTT-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             Hhc-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence            988 65 5999 99999999999 88899999999999999999999986543    111 4566889999999999987


Q ss_pred             cccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH-HHHHHHHHHHHH----HHHHHc
Q 013019          362 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRM----AEILEA  426 (451)
Q Consensus       362 ~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~-Rl~~~~~nA~~L----ae~L~~  426 (451)
                      .   ++|+++++++++++++..+..++..+++..++.+..+++.+.. +++++.++++.+    .+.|.+
T Consensus       213 ~---~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~  279 (374)
T 2aeu_A          213 P---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNK  279 (374)
T ss_dssp             C---SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             c---ceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   4899999999999998887777777888888888888877654 677777777666    455543

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.91  E-value=1.2e-23  Score=214.73  Aligned_cols=210  Identities=16%  Similarity=0.158  Sum_probs=174.9

Q ss_pred             chhHHHHHHHH-HhhhC-CCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC--
Q 013019          209 NPTTVVVEEKM-SALEG-AESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (451)
Q Consensus       209 npt~~~Lee~L-A~l~g-ae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~--  283 (451)
                      +|...+||+++ ++++| .+++++++||++|+..++.++ +++||+||++.+.|.++...    +...|.++.+++..  
T Consensus        35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~----~~~~G~~~~~v~~~~~  110 (377)
T 3ju7_A           35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLA----AIWCGLEPYFIDISID  110 (377)
T ss_dssp             CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTT
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCc
Confidence            58899999999 99999 889999999999999999998 89999999999999987643    34568888888642  


Q ss_pred             ----CHHHHHHhh-cCCC--eEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--ccc-cCCCcEEEE
Q 013019          284 ----DMEGLEAAL-NNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KAL-SLGADLVLH  353 (451)
Q Consensus       284 ----D~d~Le~ai-~~~~--tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--~pl-~~GaDiVv~  353 (451)
                          |+++|++++ ++ +  |++|+   |+||+|.+.|+++|.++|+ +|++||+|++++.+...  +++ ....|+.++
T Consensus       111 ~~~~d~~~l~~~i~~~-~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~  185 (377)
T 3ju7_A          111 DWYMDKTVLWDKIEEL-KEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIY  185 (377)
T ss_dssp             TCSBCHHHHHHHHHHH-GGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEE
T ss_pred             cCCcCHHHHHHHHhcC-CCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEE
Confidence                899999988 43 4  88887   7889999999999999999 99999999998765332  232 223788888


Q ss_pred             CC--cccCCccccceeEEEEe-CHHHHHHHHHHhHh------------hCCCccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013019          354 SA--TKFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL  418 (451)
Q Consensus       354 S~--SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~------------~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~  418 (451)
                      |+  +|++++ +  .||++++ ++++.++++.++..            ++..++++.+++.+.+++++..+++++.++++
T Consensus       186 S~~~~K~l~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~  262 (377)
T 3ju7_A          186 SFHATKPFGI-G--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISE  262 (377)
T ss_dssp             ECBTTSSSCC-B--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ECCCCCcCCC-C--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            85  699997 4  4787776 56788888876542            23457899999999999999999999999999


Q ss_pred             HHHHHHHcCCCe
Q 013019          419 RMAEILEAHPKV  430 (451)
Q Consensus       419 ~Lae~L~~~p~V  430 (451)
                      .+.+.|++++.+
T Consensus       263 ~~~~~L~~~~~~  274 (377)
T 3ju7_A          263 WYKQLLQSNGLM  274 (377)
T ss_dssp             HHHHHHHHTTTT
T ss_pred             HHHHHhcCCCCc
Confidence            999999998754

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.91  E-value=1.7e-23  Score=209.81  Aligned_cols=220  Identities=15%  Similarity=0.238  Sum_probs=171.6

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +.+|+++...+|+++|++++|.   ++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..+
T Consensus        61 ~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v  136 (367)
T 3euc_A           61 LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMS----AQFAGLEFVGV  136 (367)
T ss_dssp             TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHH----HHTTTCEEEEE
T ss_pred             hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEe
Confidence            4456667788999999999997   4556666667999999999999999999999999987643    44568888777


Q ss_pred             C-----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhc--CCEEEEecCCCCCCccc----cccC
Q 013019          281 D-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKK--GAIVCIDGTFATPLNQK----ALSL  346 (451)
Q Consensus       281 d-----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~--g~~lVVD~tfa~~~~~~----pl~~  346 (451)
                      +     ..|+++|++++++.++++|++++|+||||.+.   ++++|+++|++|  |+++|+|++|+......    ....
T Consensus       137 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~  216 (367)
T 3euc_A          137 PLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDF  216 (367)
T ss_dssp             ECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTC
T ss_pred             cCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhC
Confidence            5     34899999999863489999999999999996   577888889999  99999999987532211    1123


Q ss_pred             CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH
Q 013019          347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       347 GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~  423 (451)
                      +.++++.|+||+ +++| .++|+++++++++++++.....+  ..++..++.+...+   +.+..+.++..++++.+.+.
T Consensus       217 ~~~i~~~s~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  292 (367)
T 3euc_A          217 GNLLVMRTVSKL-GLAG-IRLGYVAGDPQWLEQLDKVRPPY--NVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEG  292 (367)
T ss_dssp             TTEEEEEECCCT-TSCS-CCEEEEEECHHHHHHHGGGCCSS--CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecchhh-cccc-cCceeeeeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999 6554 67899999999988887665443  35566555544444   34566777888899999999


Q ss_pred             HHcCCCeE
Q 013019          424 LEAHPKVL  431 (451)
Q Consensus       424 L~~~p~V~  431 (451)
                      |+++|++.
T Consensus       293 l~~~~g~~  300 (367)
T 3euc_A          293 MAAHGGVT  300 (367)
T ss_dssp             HHTSTTCE
T ss_pred             HHhCCCcE
Confidence            99998886

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.91  E-value=2.6e-23  Score=208.20  Aligned_cols=219  Identities=13%  Similarity=0.198  Sum_probs=173.1

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+++...+|+++|++++|.  ++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++
T Consensus        59 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~  134 (365)
T 3get_A           59 AHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIY----AKQCGAKCYKTQ  134 (365)
T ss_dssp             TTSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHHHTCEEEECS
T ss_pred             hccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHH----HHHcCCEEEEEe
Confidence            4455666567999999999994  5778888888999999999999999999999999876543    445688888887


Q ss_pred             C-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHH--hcCCEEEEecCCCCCC---c----cccc---
Q 013019          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL---N----QKAL---  344 (451)
Q Consensus       282 ~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~--~~g~~lVVD~tfa~~~---~----~~pl---  344 (451)
                      .     .|+++|++++++ ++++|++++|+||||.+.++++|.++++  ++|+++|+|++|+...   .    ...+   
T Consensus       135 ~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  213 (365)
T 3get_A          135 SITHNLDEFKKLYETHKD-EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELI  213 (365)
T ss_dssp             SSSCCHHHHHHHHHHTTT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHH
T ss_pred             cCCCCCCCHHHHHHHhCC-CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHh
Confidence            6     468899999986 4999999999999999999999888888  6799999999987322   1    1111   


Q ss_pred             -cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHH
Q 013019          345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRM  420 (451)
Q Consensus       345 -~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~L  420 (451)
                       ..+.++++.|+||.++.+| .++|+++++++++++++.....++  .++..++.+...+   +.+..+.++..++++.+
T Consensus       214 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  290 (365)
T 3get_A          214 KEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAFYKLRAPFN--VSNLALKAAVAAMDDDEFTEKTLENNFSQMELY  290 (365)
T ss_dssp             HHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHHHHHSCTTC--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHHHHhcCCCC--cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence             2366799999999997665 568999999999999888766554  5555555444443   44666777888889999


Q ss_pred             HHHHHcCCCeE
Q 013019          421 AEILEAHPKVL  431 (451)
Q Consensus       421 ae~L~~~p~V~  431 (451)
                      .+.|+++ ++.
T Consensus       291 ~~~l~~~-g~~  300 (365)
T 3get_A          291 KEFAKKH-NIK  300 (365)
T ss_dssp             HHHHHHT-TCE
T ss_pred             HHHHHhC-CCE
Confidence            9999987 554

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.91  E-value=6.8e-24  Score=212.06  Aligned_cols=221  Identities=13%  Similarity=0.206  Sum_probs=167.5

Q ss_pred             cccCCCchhHHHHHHH-HHhhhCCCcEEEeC-CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          203 EYGRYGNPTTVVVEEK-MSALEGAESTVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~-LA~l~gae~~vv~s-SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      .++++..+...+|+++ +++++|.+ .++++ +|++|+..++.+++++||+|+++++.|.++...    +...|+++..+
T Consensus        46 ~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v  120 (371)
T 2e7j_A           46 RLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALV  120 (371)
T ss_dssp             -------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHH----HHHcCCeEEEe
Confidence            3445567888999999 99999988 55555 557999999999999999999999999987644    45678888888


Q ss_pred             C--CC-----CHHHHHHhhc-----CCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCC
Q 013019          281 D--PA-----DMEGLEAALN-----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLG  347 (451)
Q Consensus       281 d--~~-----D~d~Le~ai~-----~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~G  347 (451)
                      +  ..     |+++|+++++     + ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. .....++
T Consensus       121 ~~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~  199 (371)
T 2e7j_A          121 PKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIG  199 (371)
T ss_dssp             CCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHT
T ss_pred             ecccCCCCCcCHHHHHHHHHhhcccC-CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcC
Confidence            7  44     7999999997     5 499999999999999999999999999999999999999876543 2333457


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHH-HHHHhH--hh-----CCCccHHHHHHHHHhhHHHH-HHHHHH--HHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHH--VL-----GGALNPNAAYLIIRGMKTLH-LRVQQQ--NST  416 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~-lr~~~~--~~-----G~~ls~~~a~l~lrgL~tl~-~Rl~~~--~~n  416 (451)
                      .|+++.|++|+++++.  ++|+++++++++++ ++....  ..     ....++...+.+...++.+. ...++.  .++
T Consensus       200 ~di~~~s~sK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  277 (371)
T 2e7j_A          200 ADFIVGSGHKSMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEK  277 (371)
T ss_dssp             CSEEEEEHHHHSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred             CCEEEecCCcCCCCCC--CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999988764  57999999888776 654332  11     23344444444444555444 334555  688


Q ss_pred             HHHHHHHHHcCCCeEE
Q 013019          417 ALRMAEILEAHPKVLL  432 (451)
Q Consensus       417 A~~Lae~L~~~p~V~~  432 (451)
                      ++.+.+.|+++ ++..
T Consensus       278 ~~~l~~~L~~~-~~~~  292 (371)
T 2e7j_A          278 ARRFAAEMEKL-GIKQ  292 (371)
T ss_dssp             HHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHHHc-CcEE
Confidence            88999999887 6643

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.91  E-value=3.5e-23  Score=209.72  Aligned_cols=219  Identities=15%  Similarity=0.192  Sum_probs=173.3

Q ss_pred             CchhHHHHHHHHHhhhCC-----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          208 GNPTTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~ga-----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ..+.++++++++++++|.     ++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++.
T Consensus        80 ~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~  155 (407)
T 3nra_A           80 DLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL----VEFFEGEMVPVQL  155 (407)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEEB
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHH----HHHcCCEEEEeec
Confidence            345678889999998886     5677777778999999999999999999999999986643    4456777766653


Q ss_pred             -----------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-------c
Q 013019          283 -----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------Q  341 (451)
Q Consensus       283 -----------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-------~  341 (451)
                                 .|+++|++++++ ++++|++++|+||||.+.+   +++|+++|++||+++|+|++|+....       .
T Consensus       156 ~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~  234 (407)
T 3nra_A          156 DYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHL  234 (407)
T ss_dssp             CCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCG
T ss_pred             ccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCh
Confidence                       389999999987 4899999999999999998   89999999999999999999875321       1


Q ss_pred             ccc---cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHH
Q 013019          342 KAL---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQN  414 (451)
Q Consensus       342 ~pl---~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~  414 (451)
                      ..+   ..+.++++.|+||.++.+| .++|++++++++++.++.....+....++..++.+...+    +.+..++++..
T Consensus       235 ~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  313 (407)
T 3nra_A          235 RAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQ  313 (407)
T ss_dssp             GGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHH
T ss_pred             hhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHHH
Confidence            111   1345699999999998665 568999999999999988777776666676665554444    34666777888


Q ss_pred             HHHHHHHHHHHcCCCeEE
Q 013019          415 STALRMAEILEAHPKVLL  432 (451)
Q Consensus       415 ~nA~~Lae~L~~~p~V~~  432 (451)
                      ++++.+.+.|+++|++..
T Consensus       314 ~~~~~l~~~L~~~~~~~~  331 (407)
T 3nra_A          314 AIRDELLHVLRGCEGVFA  331 (407)
T ss_dssp             HHHHHHHHHHHTSTTCBC
T ss_pred             HHHHHHHHHHhcCCCcee
Confidence            889999999998877643

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.91  E-value=4.3e-23  Score=210.43  Aligned_cols=221  Identities=18%  Similarity=0.246  Sum_probs=168.9

Q ss_pred             CchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHcc----CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          208 GNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~----~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ..+...+++++|++++|.+  +.+++++|++|+.+++.++++    +||+|+++.+.|.++...+.. +...|+++..++
T Consensus        66 ~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~v~  144 (423)
T 3lvm_A           66 AEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEVTYLA  144 (423)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHH-HHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHH-HHHcCCEEEEec
Confidence            3456688999999999975  788888899999999998874    799999999999987665533 356688888887


Q ss_pred             CC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECC
Q 013019          282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSA  355 (451)
Q Consensus       282 ~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~  355 (451)
                      ..     |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|++||+|++++.+.. ......++|+++.|+
T Consensus       145 ~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~  223 (423)
T 3lvm_A          145 PQRNGIIDLKELEAAMRDD-TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSG  223 (423)
T ss_dssp             CCTTSCCCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEES
T ss_pred             cCCCCccCHHHHHHhcCCC-cEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEech
Confidence            54     899999999874 99999999999999999999999999999999999999876543 333456889999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHhH-------hhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHH
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-------~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~Lae~L  424 (451)
                      ||.+++.+   +|+++++++++++++....       ......+......+...++.    +....++..++++.+.+.|
T Consensus       224 sK~~g~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L  300 (423)
T 3lvm_A          224 HKIYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI  300 (423)
T ss_dssp             TTTTSCSS---CEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCC---eEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887765   6888888766555443221       11123334333332223322    3455677778888999999


Q ss_pred             HcCCCeEEE
Q 013019          425 EAHPKVLLL  433 (451)
Q Consensus       425 ~~~p~V~~V  433 (451)
                      ++.|++..+
T Consensus       301 ~~~~~~~~~  309 (423)
T 3lvm_A          301 KDIEEVYLN  309 (423)
T ss_dssp             TTSTTEEEE
T ss_pred             hcCCCEEEe
Confidence            888887554

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.91  E-value=4.7e-23  Score=205.23  Aligned_cols=217  Identities=14%  Similarity=0.182  Sum_probs=172.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+++...+|+++|++++|.  ++.+++++|++|+..++.+++++||+|+++.+.|.+...    .+...|.++..++
T Consensus        45 ~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~  120 (354)
T 3ly1_A           45 ANRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEH----FAKIAGMKVTKVK  120 (354)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEEC
T ss_pred             CcCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHH----HHHHcCCEEEEec
Confidence            4556788889999999999995  567777777899999999999999999999999998664    3456788888887


Q ss_pred             CC-----CHHHHHHhhcC-CCeEEEEEeCCCCCccccccHHHHHHHHHh--cCCEEEEecCCCCCCcc----ccc----c
Q 013019          282 PA-----DMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----S  345 (451)
Q Consensus       282 ~~-----D~d~Le~ai~~-~~tklV~lesPsNPtG~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~----~pl----~  345 (451)
                      ..     |+++|++++++ .++++|++++|+||||.+.++++|.++++.  +|+++|+|++|+.....    ..+    .
T Consensus       121 ~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  200 (354)
T 3ly1_A          121 MLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQ  200 (354)
T ss_dssp             CCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHT
T ss_pred             CCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhh
Confidence            65     89999999983 259999999999999999998888888887  99999999998743221    111    1


Q ss_pred             C-CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q 013019          346 L-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       346 ~-GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~La  421 (451)
                      . +.++++.|+||.++.+| .++|+++++++++++++.....+  ..++..++.+...+   +.+..+.++..++++.+.
T Consensus       201 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  277 (354)
T 3ly1_A          201 GAENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGRYVAGE--KINFSGVDAALASMNDSAFITYSKKSNDVSRQILL  277 (354)
T ss_dssp             TCSSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGGGTTCS--CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeeChhhccChh-hhheeeecCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            2 56799999999997555 56899999999999888766553  45666555554444   346666777888889999


Q ss_pred             HHHHcC
Q 013019          422 EILEAH  427 (451)
Q Consensus       422 e~L~~~  427 (451)
                      +.|+++
T Consensus       278 ~~l~~~  283 (354)
T 3ly1_A          278 KALEDL  283 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHC
Confidence            999876

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.91  E-value=9.1e-23  Score=204.95  Aligned_cols=209  Identities=15%  Similarity=0.265  Sum_probs=167.5

Q ss_pred             hHHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          211 TTVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       211 t~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...+|+++++++++        .++.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.++..++ 
T Consensus        67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~-  141 (370)
T 2z61_A           67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNF----IRFLGAKPVFCD-  141 (370)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEEC-
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeC-
Confidence            35678888888763        25678888888999999999999999999999999986643    455688888888 


Q ss_pred             CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc----ccccc----CCCcEEEEC
Q 013019          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS----LGADLVLHS  354 (451)
Q Consensus       283 ~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~----~~pl~----~GaDiVv~S  354 (451)
                      .|+++|++++++ ++++|++++|+||||.+.+++ |.++|+++|+++|+|++|+....    .....    .+.|+++.|
T Consensus       142 ~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s  219 (370)
T 2z61_A          142 FTVESLEEALSD-KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILING  219 (370)
T ss_dssp             SSHHHHHHHCCS-SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEE
T ss_pred             CCHHHHHHhccc-CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEec
Confidence            789999999987 499999999999999999999 99999999999999999875432    11122    367899999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t-----l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +||+++.+| .++|+++++++++++++..........++...+.+...|+.     +....++..++.+.+.+.|+++
T Consensus       220 ~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  296 (370)
T 2z61_A          220 FSKLYAMTG-WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF  296 (370)
T ss_dssp             STTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ChhccCCcc-ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999997665 57899999999999998877666556677776665555543     3444566677888888899876

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.91  E-value=1.3e-22  Score=204.02  Aligned_cols=218  Identities=16%  Similarity=0.217  Sum_probs=165.2

Q ss_pred             cCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCC-CeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          205 GRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~~G-D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      .+|+++...+|+++|++++|.+  +.+++++|++++..++.+++++| |+|++++|.|.+....+    ...|.++..++
T Consensus        53 ~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~----~~~g~~~~~v~  128 (356)
T 1fg7_A           53 NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSA----ETIGVECRTVP  128 (356)
T ss_dssp             TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHH----HHHTCEEEECC
T ss_pred             ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHH----HHcCCEEEEee
Confidence            4566666789999999999863  44444455699999999999999 99999999999866433    44577777775


Q ss_pred             C-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHH---HHHHHhcCCEEEEecCCCCCCc-cccc----cCCC
Q 013019          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV---SDLCHKKGAIVCIDGTFATPLN-QKAL----SLGA  348 (451)
Q Consensus       282 ~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~I---aelA~~~g~~lVVD~tfa~~~~-~~pl----~~Ga  348 (451)
                      .     .|+++++++++  ++++|++++|+||||.+.+.++|   +++|+ +|+++|+|++|..... ....    ..+.
T Consensus       129 ~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~  205 (356)
T 1fg7_A          129 TLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPH  205 (356)
T ss_dssp             CCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred             CCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCC
Confidence            3     47899999887  49999999999999999876555   55555 8999999999875431 1111    2356


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t-----l~~Rl~~~~~nA~~Lae~  423 (451)
                      ++++.|+||.++.+| .+.|+++++++++++++..+..+  +.++..+..+...++.     +..+.++..++.+.+.+.
T Consensus       206 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  282 (356)
T 1fg7_A          206 LAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAPY--PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA  282 (356)
T ss_dssp             EEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchHhhcCch-hhhEEEEeCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999998665 56899999999999888766544  3566665555555543     455566777888999999


Q ss_pred             HHcCCCeEE
Q 013019          424 LEAHPKVLL  432 (451)
Q Consensus       424 L~~~p~V~~  432 (451)
                      |++++++..
T Consensus       283 L~~~~~~~~  291 (356)
T 1fg7_A          283 LKEIPCVEQ  291 (356)
T ss_dssp             HHHSTTEEE
T ss_pred             HHhCCCceE
Confidence            999887544

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.91  E-value=1.7e-22  Score=203.27  Aligned_cols=225  Identities=14%  Similarity=0.130  Sum_probs=173.6

Q ss_pred             CccccCCCchhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      .+.|+....+..+++++.+++++|    .++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.+
T Consensus        62 ~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~  137 (391)
T 4dq6_A           62 IYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSV----VKNNNRE  137 (391)
T ss_dssp             CCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHH----HHHTTCE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHH----HHHcCCe
Confidence            466777777888899999999887    35678888888999999999999999999999999986643    3456888


Q ss_pred             EEEeCCC---------CHHHHHHhhcCCCeEEEEEeCCCCCcccc---ccHHHHHHHHHhcCCEEEEecCCCCCCcc---
Q 013019          277 ATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLNQ---  341 (451)
Q Consensus       277 v~~vd~~---------D~d~Le~ai~~~~tklV~lesPsNPtG~v---~DL~~IaelA~~~g~~lVVD~tfa~~~~~---  341 (451)
                      +..++..         |+++|++++++  +++|++++|+||||.+   .++++|.++|+++|+++|+|++|+.....   
T Consensus       138 ~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~  215 (391)
T 4dq6_A          138 LIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHK  215 (391)
T ss_dssp             EEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC
T ss_pred             EEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCC
Confidence            8777643         89999999976  8999999999999999   56889999999999999999998753211   


Q ss_pred             --ccccC-----CCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCC-CccHHHHHHHHHhhH----HHHH
Q 013019          342 --KALSL-----GADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGG-ALNPNAAYLIIRGMK----TLHL  408 (451)
Q Consensus       342 --~pl~~-----GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~-~ls~~~a~l~lrgL~----tl~~  408 (451)
                        ....+     +..+++.|+||.++.+| .++|++++++ +++++++......+. ..++..+..+...++    .+..
T Consensus       216 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  294 (391)
T 4dq6_A          216 HIPMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLES  294 (391)
T ss_dssp             CCCGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred             ccCHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHHH
Confidence              11122     23489999999997665 5688888775 888888877654433 456655544444433    3555


Q ss_pred             HHHHHHHHHHHHHHHHHc-CCCeEE
Q 013019          409 RVQQQNSTALRMAEILEA-HPKVLL  432 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~-~p~V~~  432 (451)
                      +.++..++++.+.+.|++ .|++..
T Consensus       295 ~~~~~~~~~~~l~~~l~~~~~~~~~  319 (391)
T 4dq6_A          295 FLEYLESNIDFAIKYINENMPKLKV  319 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCEe
Confidence            667778888999999988 577654

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.91  E-value=7.8e-23  Score=205.98  Aligned_cols=211  Identities=20%  Similarity=0.271  Sum_probs=175.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC---
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~---  283 (451)
                      .++...+||+++++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++...    +...|.++.+++..   
T Consensus        33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~----~~~~G~~~~~~~~~~~~  108 (367)
T 3nyt_A           33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAET----VALLGAKPVYVDIDPRT  108 (367)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTT
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHH----HHHcCCEEEEEecCCcc
Confidence            57889999999999999999999999999999999999 89999999999999987644    34568888887643   


Q ss_pred             ---CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCC--cEEEECC--c
Q 013019          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVLHSA--T  356 (451)
Q Consensus       284 ---D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~Ga--DiVv~S~--S  356 (451)
                         |+++|++++++ ++++|+   |+||+|...|+++|.++|+++|+++|+|++++.+........|.  |+++.|+  +
T Consensus       109 ~~~d~~~l~~~i~~-~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~  184 (367)
T 3nyt_A          109 YNLDPQLLEAAITP-RTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPS  184 (367)
T ss_dssp             CSBCGGGTGGGCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTT
T ss_pred             CCcCHHHHHHhcCc-CCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCC
Confidence               78999999987 499888   78999999999999999999999999999987654333323333  9999996  8


Q ss_pred             ccCCccccceeEEEEe-CHHHHHHHHHHhHh------------hCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~------------~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~  423 (451)
                      |++++.+.  +|++++ ++++.++++..+..            ++..+++..+.+.+..++.+....++..++++.+.+.
T Consensus       185 K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~  262 (367)
T 3nyt_A          185 APLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLS  262 (367)
T ss_dssp             SSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998663  888888 56788887765532            2345788888888888888888888888999999999


Q ss_pred             HHcCC
Q 013019          424 LEAHP  428 (451)
Q Consensus       424 L~~~p  428 (451)
                      |++.+
T Consensus       263 L~~~~  267 (367)
T 3nyt_A          263 LKQVG  267 (367)
T ss_dssp             HHHTT
T ss_pred             hccCC
Confidence            99874

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.91  E-value=5.2e-23  Score=207.47  Aligned_cols=221  Identities=16%  Similarity=0.181  Sum_probs=168.5

Q ss_pred             CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHH----ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~al----l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ..+...+|+++|++++|.   ++.+++++|++|+.+++.++    +++||+|+++++.|.+.+..+...+...|.++..+
T Consensus        65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~  144 (406)
T 1kmj_A           65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI  144 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEE
Confidence            356678899999999997   45667777889999999999    89999999999999987665555566678888887


Q ss_pred             CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEEEEC
Q 013019          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHS  354 (451)
Q Consensus       281 d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S  354 (451)
                      +.     .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... .....+.|+++.|
T Consensus       145 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s  223 (406)
T 1kmj_A          145 PLNPDGTLQLETLPTLFDE-KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS  223 (406)
T ss_dssp             CBCTTSCBCGGGHHHHCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEE
T ss_pred             ecCCCCCcCHHHHHHHhcc-CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEE
Confidence            64     378999999987 4999999999999999999999999999999999999998764321 2223579999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhH---------------------hhCCCccHHHHHHHH-HhhHHH-----H
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLII-RGMKTL-----H  407 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~---------------------~~G~~ls~~~a~l~l-rgL~tl-----~  407 (451)
                      ++|.++++|   +|+++++++++++++....                     .+....++..++.++ ..++.+     .
T Consensus       224 ~~K~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  300 (406)
T 1kmj_A          224 GHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLN  300 (406)
T ss_dssp             GGGTTSCTT---CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             chhccCCCC---cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            999997665   6999999988887754321                     011112223333222 233332     3


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          408 LRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      ...++..++++.+.+.|++.|+++.
T Consensus       301 ~~~~~~~~~~~~l~~~L~~~~~~~~  325 (406)
T 1kmj_A          301 NIAEYEQNLMHYALSQLESVPDLTL  325 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            4456666888899999998887754

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.90  E-value=4.3e-23  Score=209.33  Aligned_cols=225  Identities=14%  Similarity=0.125  Sum_probs=168.7

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH---ccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~al---l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      |.|++...+...++++++++++|.+  ..+++++|++++.+++.++   +++||+|+++.+.|.++...+....+..|.+
T Consensus        61 ~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~  140 (406)
T 3cai_A           61 HPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAK  140 (406)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCe
Confidence            4444444677889999999999974  5666667779999988887   7899999999999998766554444446888


Q ss_pred             EEEeCCC------CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCc
Q 013019          277 ATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGAD  349 (451)
Q Consensus       277 v~~vd~~------D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaD  349 (451)
                      +.+++..      |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+|+|
T Consensus       141 v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d  219 (406)
T 3cai_A          141 VKWAEVDIETGELPTWQWESLISK-STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDAD  219 (406)
T ss_dssp             EEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCS
T ss_pred             EEEEecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCC
Confidence            8888754      78999999987 499999999999999999999999999999999999999876432 222345899


Q ss_pred             EEEECCcccCCccccceeE-EEEeCHHHHHHHHHHhH---------hhCCCccHHHHHHHHHhhH---------------
Q 013019          350 LVLHSATKFIGGHNDVLAG-SISGSGKLVTQIRNLHH---------VLGGALNPNAAYLIIRGMK---------------  404 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG-~Iv~~~eli~~lr~~~~---------~~G~~ls~~~a~l~lrgL~---------------  404 (451)
                      +++.|++|+++ ++   +| +++++++++++++....         ...++.+......+...++               
T Consensus       220 ~~~~s~~K~~g-~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~  295 (406)
T 3cai_A          220 VVTVNAHAWGG-PP---IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRE  295 (406)
T ss_dssp             EEEEEGGGGTS-CS---CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHH
T ss_pred             EEEeehhhhcC-CC---cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhh
Confidence            99999999876 33   56 99999988877654321         1122333333222222222               


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          405 ----TLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       405 ----tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                          .+....++..++++.+.+.|++.|+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  326 (406)
T 3cai_A          296 RLAVSMQSADAYLNRVFDYLMVSLRSLPLVM  326 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence                244455667788899999999988874

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.90  E-value=1.3e-22  Score=206.11  Aligned_cols=220  Identities=15%  Similarity=0.204  Sum_probs=165.9

Q ss_pred             cCCCchh-HHHHHHHHHhhhC--------C-CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          205 GRYGNPT-TVVVEEKMSALEG--------A-ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       205 ~R~~npt-~~~Lee~LA~l~g--------a-e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      .+|+.+. ...|++.++++++        . ++.+++++|++|+..++.+++++||+|+++.+.|.++...+    ...|
T Consensus        55 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g  130 (410)
T 3e2y_A           55 NQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMV----RMAG  130 (410)
T ss_dssp             GSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTT
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHH----HHcC
Confidence            3444432 4567777777664        2 45666666779999999999999999999999999876443    4457


Q ss_pred             cEEEEeCC----------------CCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCC
Q 013019          275 ITATVIDP----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTF  335 (451)
Q Consensus       275 i~v~~vd~----------------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tf  335 (451)
                      .++..++.                .|+++|++++++ ++++|++++|+||||.+.   ++++|+++|+++|+++|+|++|
T Consensus       131 ~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~  209 (410)
T 3e2y_A          131 AVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVY  209 (410)
T ss_dssp             CEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred             CEEEEEeccccccccccccccCCcCCHHHHHhhcCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhh
Confidence            76665543                389999999987 499999999999999995   7999999999999999999998


Q ss_pred             CCCCcc-----cccc----CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH--
Q 013019          336 ATPLNQ-----KALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK--  404 (451)
Q Consensus       336 a~~~~~-----~pl~----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~--  404 (451)
                      +.....     ....    .+.++++.|+||.++.+| .++|+++++++++++++..........++..+..+...++  
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  288 (410)
T 3e2y_A          210 EWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWID  288 (410)
T ss_dssp             TTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence            643211     1111    234599999999998666 5789999999999998877665555566766665555554  


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          405 ---------TLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       405 ---------tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                               .+....++..++.+.+.+.|+++ ++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  323 (410)
T 3e2y_A          289 IKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLK  323 (410)
T ss_dssp             HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence                     35555677778889999999987 443

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.90  E-value=4.1e-22  Score=202.09  Aligned_cols=212  Identities=15%  Similarity=0.164  Sum_probs=168.8

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      ..+.++++++++++++|.++.+++++|++|+..++.+++++||+|+++++.|+.+...    +...|.++..++..|+++
T Consensus        86 ~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~----~~~~g~~~~~v~~~d~~~  161 (398)
T 3a2b_A           86 TLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDG----SRLSFSKVIKYGHNNMED  161 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHH----HHHSSSEEEEECTTCHHH
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHH----HHHcCCceEEeCCCCHHH
Confidence            3577899999999999999889999999999999999999999999999999987643    445688988888889999


Q ss_pred             HHHhhcCC---CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-c--cc-cc-C----CCcEEEECC
Q 013019          288 LEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-Q--KA-LS-L----GADLVLHSA  355 (451)
Q Consensus       288 Le~ai~~~---~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~--~p-l~-~----GaDiVv~S~  355 (451)
                      |++++++.   ++++|++++|+||||.+.++++|.++|+++|+++|+|++|+.+.. .  .+ .+ .    ++|+++.|+
T Consensus       162 l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~  241 (398)
T 3a2b_A          162 LRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTF  241 (398)
T ss_dssp             HHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEES
T ss_pred             HHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecc
Confidence            99999762   489999999999999999999999999999999999999976532 1  11 11 1    269999999


Q ss_pred             cccCCccccceeEEEEeCHHHHHHHHHHh-H-hhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcC
Q 013019          356 TKFIGGHNDVLAGSISGSGKLVTQIRNLH-H-VLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-~-~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ||+++..    ||+++++++++++++... . ......++..+..+...|+.   +..+.++..++.+.+.+.|++.
T Consensus       242 sK~~~~~----GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  314 (398)
T 3a2b_A          242 SKSLASL----GGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH  314 (398)
T ss_dssp             SSTTCSS----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccCC----CcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999854    399999999999887742 2 22334445444333334433   3355667778888899999876

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.90  E-value=2.8e-22  Score=201.05  Aligned_cols=217  Identities=15%  Similarity=0.094  Sum_probs=166.4

Q ss_pred             chhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          209 NPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae--~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .+..+++++++++++|.+  + .+++++|++|+..++.+++++||+|+++++.|.+..  +...+...|+++..++.   
T Consensus        52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  129 (386)
T 2dr1_A           52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVLEYEPG  129 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEEecCCC
Confidence            567888999999999975  5 455677889999999999999999999999998731  22445567888877764   


Q ss_pred             --CCHHHHHHhhcC-CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCccc
Q 013019          283 --ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKF  358 (451)
Q Consensus       283 --~D~d~Le~ai~~-~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~  358 (451)
                        .|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+++|+++.|+||+
T Consensus       130 ~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~  209 (386)
T 2dr1_A          130 KAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKA  209 (386)
T ss_dssp             CCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTST
T ss_pred             CCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEecccc
Confidence              589999999942 2489999999999999999999999999999999999999876533 222345789999999999


Q ss_pred             CCccccceeEEEEeCHHHHHHHH----------------HHh--HhhCCCccHHHHHHHHHhhHH------HHHHHHHHH
Q 013019          359 IGGHNDVLAGSISGSGKLVTQIR----------------NLH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQQN  414 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~~eli~~lr----------------~~~--~~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~  414 (451)
                      ++++.  .+|+++++++++++++                ...  .....+.++..++.+...++.      +..+.++..
T Consensus       210 ~~~~~--g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~  287 (386)
T 2dr1_A          210 FGVPP--GLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYE  287 (386)
T ss_dssp             TCCCS--SCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCC--ceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99874  2699999998888763                111  122234555555444444443      345567778


Q ss_pred             HHHHHHHHHHHcCCCe
Q 013019          415 STALRMAEILEAHPKV  430 (451)
Q Consensus       415 ~nA~~Lae~L~~~p~V  430 (451)
                      ++++.+.+.|+++ ++
T Consensus       288 ~~~~~l~~~L~~~-g~  302 (386)
T 2dr1_A          288 KRAKMVREGVREI-GL  302 (386)
T ss_dssp             HHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHc-CC
Confidence            8899999999886 44

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.90  E-value=7.8e-23  Score=206.73  Aligned_cols=217  Identities=17%  Similarity=0.204  Sum_probs=173.6

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      |+++..+...+|+++|++++|.++.++++||++|+..++.++ +++||+|+++.+.|.++...    +...|+++.+++.
T Consensus        32 ~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~----~~~~g~~~~~v~~  107 (388)
T 1b9h_A           32 WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQA----AQRLGAVTVPVDV  107 (388)
T ss_dssp             CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECB
T ss_pred             eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHH----HHHcCCEEEEEec
Confidence            455677889999999999999989999999999999999999 89999999999999987643    3556888887763


Q ss_pred             ------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--c-cccCCCcEEEE
Q 013019          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--K-ALSLGADLVLH  353 (451)
Q Consensus       283 ------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--~-pl~~GaDiVv~  353 (451)
                            .|+++|+++++++ +++|+   |+||+|.+.|+++|.++|+++|++||+|++++.+...  . ...++ |+++.
T Consensus       108 ~~~~~~~d~~~l~~~i~~~-~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~  182 (388)
T 1b9h_A          108 DAATYNLDPEAVAAAVTPR-TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF  182 (388)
T ss_dssp             CTTTCCBCHHHHHHHCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred             CCCcCCCCHHHHHHhcCcC-ceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEE
Confidence                  3799999999874 88887   9999999999999999999999999999999865432  1 22334 77888


Q ss_pred             CCc--ccCCccccceeEEEEeCHH-H--HHHHHHHhHh-------------hCC--CccHHHHHHHHHhhHHHHHHHHHH
Q 013019          354 SAT--KFIGGHNDVLAGSISGSGK-L--VTQIRNLHHV-------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQ  413 (451)
Q Consensus       354 S~S--K~l~G~gdv~gG~Iv~~~e-l--i~~lr~~~~~-------------~G~--~ls~~~a~l~lrgL~tl~~Rl~~~  413 (451)
                      |++  |+++|.   ++|+++++++ +  +++++.....             .|.  .+++..++++..+++.+..+++++
T Consensus       183 S~s~~K~l~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~  259 (388)
T 1b9h_A          183 SFQNGKLMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVR  259 (388)
T ss_dssp             ECCTTSSSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHH
T ss_pred             EccCCCcccCC---CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            876  777664   4899998875 5  5655543321             022  257777777777888888888888


Q ss_pred             HHHHHHHHHHHHcCCCeEE
Q 013019          414 NSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       414 ~~nA~~Lae~L~~~p~V~~  432 (451)
                      .++++.+.+.|+++|++..
T Consensus       260 ~~~~~~l~~~L~~~~~~~~  278 (388)
T 1b9h_A          260 DERWTLLSRLLGAIDGVVP  278 (388)
T ss_dssp             HHHHHHHHHHHHTSTTCEE
T ss_pred             HHHHHHHHHHhccCCCccc
Confidence            8999999999999888754

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.90  E-value=1.7e-22  Score=208.13  Aligned_cols=213  Identities=16%  Similarity=0.177  Sum_probs=173.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+...+|+++|++++|.++.++++||++|+..++.+++++||+|+++.+.|+++...    +...|.++..++..|+++|
T Consensus       108 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~----~~~~g~~~~~~~~~d~~~l  183 (427)
T 2w8t_A          108 FHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDG----CQQGNAEIVRFRHNSVEDL  183 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHH----HHHSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHH----HHHcCCeeEEeCCCCHHHH
Confidence            477889999999999999999999999999999999999999999999999986643    3456888888888899999


Q ss_pred             HHhhcCC---CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc---------ccccCCCcEEEECCc
Q 013019          289 EAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHSAT  356 (451)
Q Consensus       289 e~ai~~~---~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~---------~pl~~GaDiVv~S~S  356 (451)
                      ++++++.   ++++|++++|+||+|.+.++++|.++|+++|+++|+|++++.+...         ..+..++|+++.|++
T Consensus       184 e~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~s  263 (427)
T 2w8t_A          184 DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFS  263 (427)
T ss_dssp             HHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESS
T ss_pred             HHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecch
Confidence            9999762   4899999999999999999999999999999999999998765332         111235799999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHHh--HhhCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~~--~~~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      |+++..    ||++++++++++.++...  ..++..+++..+..+...++.+   ..+.++..++++.+.+.|++. ++
T Consensus       264 K~~g~~----gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  337 (427)
T 2w8t_A          264 KSVGTV----GGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GF  337 (427)
T ss_dssp             STTCSC----CEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred             hhhccC----CCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CC
Confidence            999743    599999988888776542  2234556776666555555554   566778888899999999876 44

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.90  E-value=6.6e-22  Score=200.46  Aligned_cols=210  Identities=13%  Similarity=0.170  Sum_probs=158.6

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ...|++.+++++    |.    ++.+++++|++|+..++.+++++||+|+++.|.|.+....    ++..|.++..++. 
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~  145 (385)
T 1b5p_A           70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEM----VRFAGGVVVEVETL  145 (385)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCEEEEeecC
Confidence            456667766665    42    4566666777999999999999999999999999876543    4456877776653 


Q ss_pred             ------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccccC--C
Q 013019          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSL--G  347 (451)
Q Consensus       283 ------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl~~--G  347 (451)
                            .|+++|+++++++ +++|++++|+||||.+++   +++|+++|+++|++||+|++|+.....    ....+  +
T Consensus       146 ~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  224 (385)
T 1b5p_A          146 PEEGFVPDPERVRRAITPR-TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE  224 (385)
T ss_dssp             GGGTTCCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred             cccCCCCCHHHHHHhcCCC-CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCC
Confidence                  4789999999874 999999999999999876   889999999999999999998764321    11222  5


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh-------HHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM-------KTLHLRVQQQNSTALRM  420 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL-------~tl~~Rl~~~~~nA~~L  420 (451)
                      .++++.|+||.++.+| .++|+++++++++++++..+.......+....+.+...+       +.+....++..++.+.+
T Consensus       225 ~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  303 (385)
T 1b5p_A          225 HTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLL  303 (385)
T ss_dssp             TEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHH
Confidence            6899999999998776 568999999999998887765544455555554443333       33444556667778888


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|+++
T Consensus       304 ~~~L~~~  310 (385)
T 1b5p_A          304 LEGLTAL  310 (385)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            8888875

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.90  E-value=2e-22  Score=205.62  Aligned_cols=210  Identities=11%  Similarity=0.112  Sum_probs=168.0

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHH
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE  289 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le  289 (451)
                      +..++|+++|++++|.+..+++++|++|+..++.+++++||+|+++++.|+++...    +...|.++..++..|+++|+
T Consensus       104 ~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~le  179 (409)
T 3kki_A          104 YDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEG----ARYANAQAHPFMHNNCDHLR  179 (409)
T ss_dssp             TTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHH----HHHTTCEEEEECTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHH----HHHcCCeEEEecCCCHHHHH
Confidence            55678999999999999999999999999999999999999999999999887643    34458888888888999999


Q ss_pred             HhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc---------cccCCCcEEEECCcccCC
Q 013019          290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---------ALSLGADLVLHSATKFIG  360 (451)
Q Consensus       290 ~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~---------pl~~GaDiVv~S~SK~l~  360 (451)
                      ++++++++++|++++|+||||.+.++++|.++|+++|++||+|++++.+....         .+..+.|+++.|++|.++
T Consensus       180 ~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~  259 (409)
T 3kki_A          180 MLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFA  259 (409)
T ss_dssp             HHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred             HHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhC
Confidence            99976448999999999999999999999999999999999999987543211         111247899999999998


Q ss_pred             ccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHcC
Q 013019          361 GHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~tl---~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +.    +|++++++++++.++....  .++...++..+..++..++.+   ....++..++.+.+.+.|++.
T Consensus       260 ~~----gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~  327 (409)
T 3kki_A          260 YR----AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL  327 (409)
T ss_dssp             SS----CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CC----ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc
Confidence            76    5999999988887766432  234456666655444444443   445566677888888888876

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.90  E-value=7.9e-22  Score=199.06  Aligned_cols=214  Identities=16%  Similarity=0.199  Sum_probs=163.9

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ...|++.+++++    |    .++.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.++..++. 
T Consensus        69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~~  144 (388)
T 1j32_A           69 EPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEM----VKLAEGTPVILPTT  144 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCEEEEecCC
Confidence            456677776665    4    24566666677999999999999999999999999886543    4456888877764 


Q ss_pred             ------CCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCcc-------cccc-
Q 013019          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALS-  345 (451)
Q Consensus       283 ------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~~-------~pl~-  345 (451)
                            .|+++|+++++++ +++|++++|+||||.+.   ++++|.++|+++|+++|+|++|+.....       ..+. 
T Consensus       145 ~~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  223 (388)
T 1j32_A          145 VETQFKVSPEQIRQAITPK-TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP  223 (388)
T ss_dssp             GGGTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred             cccCCCCCHHHHHHhcCcC-ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccc
Confidence                  3789999999874 99999999999999996   4899999999999999999998753211       1111 


Q ss_pred             --CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHHH
Q 013019          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALR  419 (451)
Q Consensus       346 --~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~~  419 (451)
                        .+.|+++.|+||+++.+| .++|+++++++++++++..........++..++.+...|+    .+....++..++++.
T Consensus       224 ~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  302 (388)
T 1j32_A          224 EAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRY  302 (388)
T ss_dssp             HHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEeechhccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence              357899999999997665 5689999999999988877665445556665554444433    355566777788899


Q ss_pred             HHHHHHcCCCeE
Q 013019          420 MAEILEAHPKVL  431 (451)
Q Consensus       420 Lae~L~~~p~V~  431 (451)
                      +.+.|++.|++.
T Consensus       303 l~~~L~~~~g~~  314 (388)
T 1j32_A          303 MLDALNAMPGLE  314 (388)
T ss_dssp             HHHHHHTCTTCB
T ss_pred             HHHHHhhCCCCc
Confidence            999999887764

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.90  E-value=6.2e-22  Score=200.61  Aligned_cols=215  Identities=13%  Similarity=0.108  Sum_probs=163.1

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ..+|++++++++    |    .++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++. 
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~  143 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMA----IKNQERKIIECELL  143 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHTTTCEEEECCCE
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHH----HHHcCCEEEecccc
Confidence            566777777763    5    35677777888999999999999999999999999986643    3455777776653 


Q ss_pred             -------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc-c--
Q 013019          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL-S--  345 (451)
Q Consensus       283 -------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl-~--  345 (451)
                             .|+++|++++++.++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....    .++ .  
T Consensus       144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  223 (399)
T 1c7n_A          144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID  223 (399)
T ss_dssp             EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred             cCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcC
Confidence                   57999999997335999999999999999998   999999999999999999998753210    111 1  


Q ss_pred             ---CCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCC-CccHHHHHHHHHhh----HHHHHHHHHHHHH
Q 013019          346 ---LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGM----KTLHLRVQQQNST  416 (451)
Q Consensus       346 ---~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~-~ls~~~a~l~lrgL----~tl~~Rl~~~~~n  416 (451)
                         .+.++++.|+||.++.+| .++|+++++ ++++++++.....++. ..++..++.+...+    +.+....++..++
T Consensus       224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  302 (399)
T 1c7n_A          224 EQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKN  302 (399)
T ss_dssp             HHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence               245789999999998665 467998886 6799988877666543 45666555444443    3345556667788


Q ss_pred             HHHHHHHHHc-CCCeE
Q 013019          417 ALRMAEILEA-HPKVL  431 (451)
Q Consensus       417 A~~Lae~L~~-~p~V~  431 (451)
                      .+.+.+.|++ +|++.
T Consensus       303 ~~~l~~~L~~~~~~~~  318 (399)
T 1c7n_A          303 QRIVKDFFEVNHPEIK  318 (399)
T ss_dssp             HHHHHHHHHHHCTTSB
T ss_pred             HHHHHHHHHhhCCCCe
Confidence            8899999988 67653

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.90  E-value=2.3e-22  Score=201.71  Aligned_cols=214  Identities=16%  Similarity=0.177  Sum_probs=173.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC---
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~---  283 (451)
                      .++...+|+++|+++++.++.+++++|++|+..++.++ +++||+|+++.+.|.++...    +...|+++.+++..   
T Consensus        36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~  111 (374)
T 3uwc_A           36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGA----IVQAGATPVLVDSENGY  111 (374)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTS
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCC
Confidence            57889999999999999999999999999999999999 99999999999999987643    45678888888754   


Q ss_pred             --CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--ccccCCCcEEEECCc--c
Q 013019          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSAT--K  357 (451)
Q Consensus       284 --D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--~pl~~GaDiVv~S~S--K  357 (451)
                        |+++|+++++++ +++|+   |+||+|.+.|+++|.++|+++|+++|+|++++.+...  .+.....|+++.|++  |
T Consensus       112 ~~d~~~l~~~~~~~-~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K  187 (374)
T 3uwc_A          112 VIDPEKIEAAITDK-TKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLK  187 (374)
T ss_dssp             SBCGGGTGGGCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSS
T ss_pred             CcCHHHHHHhCCCC-ceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCC
Confidence              889999999874 88888   8999999999999999999999999999998865332  222223799999976  9


Q ss_pred             cCCccccceeEEEEeC-HHHHHHHHHHhHh------------hCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~------------~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      ++++++  .+|+++++ +++.++++..+..            ....+.+..+.+.+..++.+....++..++++.+.+.|
T Consensus       188 ~l~~~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l  265 (374)
T 3uwc_A          188 NLNVWS--DAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSF  265 (374)
T ss_dssp             SSCCSS--CCEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCccc--eeEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998866  37888875 4677777765421            11234667777766677777777888888999999999


Q ss_pred             HcCCC-eE
Q 013019          425 EAHPK-VL  431 (451)
Q Consensus       425 ~~~p~-V~  431 (451)
                      ++.++ +.
T Consensus       266 ~~~~~~~~  273 (374)
T 3uwc_A          266 VDLSEFID  273 (374)
T ss_dssp             GGGTTTEE
T ss_pred             ccCCCeEE
Confidence            98876 54

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.90  E-value=1.9e-22  Score=203.03  Aligned_cols=212  Identities=14%  Similarity=0.178  Sum_probs=171.6

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC--
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~--  283 (451)
                      +.++...+||++|++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++...    +...|.++.+++..  
T Consensus        33 ~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~----~~~~g~~~~~~~~~~~  108 (373)
T 3frk_A           33 ILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALA----VSYTGAKPIFVEPDIR  108 (373)
T ss_dssp             SSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHH----HHHHSCEEEEECEETT
T ss_pred             cCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecccc
Confidence            356889999999999999999999999999999999999 99999999999999987644    34558888887643  


Q ss_pred             ----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCC--CcEEEECCc-
Q 013019          284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT-  356 (451)
Q Consensus       284 ----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~G--aDiVv~S~S-  356 (451)
                          |+++|++++++ ++++|+   |+||+|.+.|+++|.++|+++|+++|+|++++.+........|  .|+++.|++ 
T Consensus       109 ~~~~d~~~l~~~l~~-~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~  184 (373)
T 3frk_A          109 TYNIDPSLIESAITE-KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYP  184 (373)
T ss_dssp             TTEECGGGTGGGCCT-TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred             ccCcCHHHHHHhcCC-CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcC
Confidence                78999999987 499988   6889999999999999999999999999998865433322344  799999966 


Q ss_pred             -ccCCccccceeEEEEeC-HHHHHHHHHHhHhh------------CCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 013019          357 -KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAE  422 (451)
Q Consensus       357 -K~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~------------G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae  422 (451)
                       |++++++  .+|+++++ ++++++++..+...            ...+.+..+.+.+..++.+....++..++++.+.+
T Consensus       185 ~K~l~~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~  262 (373)
T 3frk_A          185 AKNLGSLG--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIA  262 (373)
T ss_dssp             TSSSCCSS--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             CCccCccc--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             9998855  38888876 46777777654321            12356777777666677777777888888999999


Q ss_pred             HHHcCC
Q 013019          423 ILEAHP  428 (451)
Q Consensus       423 ~L~~~p  428 (451)
                      .|++.+
T Consensus       263 ~l~~~~  268 (373)
T 3frk_A          263 GINNPN  268 (373)
T ss_dssp             HCCCTT
T ss_pred             HhccCc
Confidence            998876

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.90  E-value=2.1e-22  Score=201.07  Aligned_cols=217  Identities=17%  Similarity=0.166  Sum_probs=164.8

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCC--eEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD--~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      +|...+|+++|++++|.+..+++++|++|+..++.+++.+||  .|+++.+.|...+... ......|+++..++.    
T Consensus        46 ~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~  124 (357)
T 3lws_A           46 GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQD-GLKELHPIETILVGAADRL  124 (357)
T ss_dssp             ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHSSCEEEECSCTTSC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccc-hhhhccCcEEEEecCCCCC
Confidence            588999999999999998899999999999999999999998  6776666554433210 112334788777763    


Q ss_pred             CCHHHHHHhhcCCCeEEEEEeCCCCCc-ccccc---HHHHHHHHHhcCCEEEEecCCCC------CCccccccCCCcEEE
Q 013019          283 ADMEGLEAALNNNNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGADLVL  352 (451)
Q Consensus       283 ~D~d~Le~ai~~~~tklV~lesPsNPt-G~v~D---L~~IaelA~~~g~~lVVD~tfa~------~~~~~pl~~GaDiVv  352 (451)
                      .|+++|+++.  + +++|++++|+||+ |.+.+   +++|.++|++||++||+|++|..      +.....+..+.|+++
T Consensus       125 ~d~~~l~~~~--~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~  201 (357)
T 3lws_A          125 MTLDEIKALP--D-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIY  201 (357)
T ss_dssp             CCHHHHHTCC--S-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEE
T ss_pred             cCHHHHhcCc--C-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEE
Confidence            4789998873  3 8999999999998 88874   89999999999999999998751      111222334579999


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc--cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l--s~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      .|+||+++++.   +|+++++++++++++..+..++..+  ....+..+..+++....++++..++++.+.+.|+++|++
T Consensus       202 ~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~  278 (357)
T 3lws_A          202 ISFYKGLGGIA---GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGV  278 (357)
T ss_dssp             EESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTE
T ss_pred             EeccccCCCCc---eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999997765   6999999999999987776665432  222233334556665566777788899999999999988


Q ss_pred             EE
Q 013019          431 LL  432 (451)
Q Consensus       431 ~~  432 (451)
                      +.
T Consensus       279 ~~  280 (357)
T 3lws_A          279 HT  280 (357)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.90  E-value=2.4e-22  Score=205.16  Aligned_cols=213  Identities=14%  Similarity=0.194  Sum_probs=161.5

Q ss_pred             HHHHHHHHHhhhC----C-----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALEG----A-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~g----a-----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...|++.|+++++    .     ++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++.
T Consensus        69 ~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~  144 (422)
T 3fvs_A           69 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPM----TMMAGGRPVFVSL  144 (422)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHH----HHHcCCEEEEEec
Confidence            3455555555543    2     3566667777999999999999999999999999986643    3456777666532


Q ss_pred             -----------------CCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCcc-
Q 013019          283 -----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-  341 (451)
Q Consensus       283 -----------------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~~-  341 (451)
                                       .|+++|+++++++ +++|++++|+||||.+.   ++++|.++|+++|+++|+|++|+..... 
T Consensus       145 ~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~  223 (422)
T 3fvs_A          145 KPGPIQNGELGSSSNWQLDPMELAGKFTSR-TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG  223 (422)
T ss_dssp             BCCCCCSSSCCBGGGSBCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             ccccccccccccccCCCCCHHHHHhhcCCC-ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC
Confidence                             4899999999874 99999999999999998   6999999999999999999998753211 


Q ss_pred             ----cccc----CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---------
Q 013019          342 ----KALS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---------  404 (451)
Q Consensus       342 ----~pl~----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---------  404 (451)
                          ....    .+.++++.|+||.++.+| .+.|+++++++++++++..........++..++.+...++         
T Consensus       224 ~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  302 (422)
T 3fvs_A          224 HQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP  302 (422)
T ss_dssp             CCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch
Confidence                1111    245699999999998665 5689999999999998877665555566666665555554         


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          405 --TLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       405 --tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                        .+....++..++.+.+.+.|+++ ++.
T Consensus       303 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  330 (422)
T 3fvs_A          303 SSYFVQFPQAMQRCRDHMIRSLQSV-GLK  330 (422)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-CCe
Confidence              34556677788889999999987 554

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.90  E-value=4.9e-22  Score=200.36  Aligned_cols=218  Identities=16%  Similarity=0.163  Sum_probs=168.5

Q ss_pred             CCCch-hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          206 RYGNP-TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       206 R~~np-t~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      +|+.+ ...+|+++|+++.+.  ++.+++++|++|+..++.+++++||+|+++++.|.+....    ++..|.++..++.
T Consensus        56 ~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~  131 (381)
T 1v2d_A           56 QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPD----AFLAGAKARLVRL  131 (381)
T ss_dssp             SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEeC
Confidence            34443 467899999999986  4677788888999999999999999999999999986643    4456777766653


Q ss_pred             --------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc--c
Q 013019          283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL--S  345 (451)
Q Consensus       283 --------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl--~  345 (451)
                              .|+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    ...  .
T Consensus       132 ~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~  210 (381)
T 1v2d_A          132 DLTPEGFRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA  210 (381)
T ss_dssp             EEETTEEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC
T ss_pred             CCCCccCCcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhc
Confidence                    379999999976 4999999999999999975   899999999999999999998754221    111  3


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH------HHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTALR  419 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~------tl~~Rl~~~~~nA~~  419 (451)
                      .+.|+++.|+||+++.+| .++|++++++++++.++........+.++...+.+...|+      .+....++..++++.
T Consensus       211 ~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~  289 (381)
T 1v2d_A          211 PERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL  289 (381)
T ss_dssp             TTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            478999999999998665 5689999999999888876655444555555444444443      234456667788888


Q ss_pred             HHHHHHcCCCe
Q 013019          420 MAEILEAHPKV  430 (451)
Q Consensus       420 Lae~L~~~p~V  430 (451)
                      +.+.|++. ++
T Consensus       290 l~~~L~~~-g~  299 (381)
T 1v2d_A          290 LAGGLRAM-GL  299 (381)
T ss_dssp             HHHHHHHT-TC
T ss_pred             HHHHHHHC-CC
Confidence            99999874 44

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.90  E-value=6.4e-22  Score=200.83  Aligned_cols=211  Identities=15%  Similarity=0.175  Sum_probs=164.0

Q ss_pred             hHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       211 t~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...+|++.+++++    |.    ++.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.++..++.
T Consensus        79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~  154 (389)
T 1o4s_A           79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQ----IILAGGTVNVVET  154 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEec
Confidence            4567888888876    53    4667777777999999999999999999999999986643    3456777776643


Q ss_pred             -------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----c--ccc-
Q 013019          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K--ALS-  345 (451)
Q Consensus       283 -------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~--pl~-  345 (451)
                             .|+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....    .  .+. 
T Consensus       155 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~  233 (389)
T 1o4s_A          155 FMSKNFQPSLEEVEGLLVG-KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE  233 (389)
T ss_dssp             CGGGTTCCCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS
T ss_pred             CCccCCCCCHHHHHHhccc-CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC
Confidence                   278999999987 4999999999999999976   899999999999999999998754321    1  111 


Q ss_pred             -CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHH
Q 013019          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-LHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       346 -~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t-l~~Rl~~~~~nA~~Lae~  423 (451)
                       .+.|+++.|+||+++.+| .++|+++++++++++++..........++..++.+...|+. +....++..++++.+.+.
T Consensus       234 ~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~  312 (389)
T 1o4s_A          234 GFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVER  312 (389)
T ss_dssp             SSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence             368999999999997665 56899999999999888776655555566666655555543 344456667788888889


Q ss_pred             HHcC
Q 013019          424 LEAH  427 (451)
Q Consensus       424 L~~~  427 (451)
                      |++.
T Consensus       313 L~~~  316 (389)
T 1o4s_A          313 LKKM  316 (389)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9876

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.90  E-value=4.1e-22  Score=200.58  Aligned_cols=216  Identities=16%  Similarity=0.163  Sum_probs=166.3

Q ss_pred             CCCc-hhHHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          206 RYGN-PTTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       206 R~~n-pt~~~Lee~LA~l~----ga----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      +|+. +....|++++++++    |.    + +.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.
T Consensus        58 ~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~  133 (376)
T 2dou_A           58 GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGA----ARVASL  133 (376)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHH----HHHcCC
Confidence            4555 45778999999987    75    3 566667777999999999999999999999999886643    345688


Q ss_pred             EEEEeCC-----CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc----ccc
Q 013019          276 TATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKA  343 (451)
Q Consensus       276 ~v~~vd~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~----~~p  343 (451)
                      ++..++.     .|+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.....    ...
T Consensus       134 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~  212 (376)
T 2dou_A          134 RTFLIPLREDGLADLKAVPEGVWR-EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSP  212 (376)
T ss_dssp             EEEEECBCTTSSBCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCG
T ss_pred             EEEEeeCCCCCCCCHHHHHHhhcc-CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCh
Confidence            8777763     467888888875 4899999999999999986   67899999999999999999865321    112


Q ss_pred             cc----CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHH
Q 013019          344 LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNS  415 (451)
Q Consensus       344 l~----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~  415 (451)
                      +.    .+.++++.|+||.++.+| .++|+++++++++++++.....++...++..+..+...++    .+....++..+
T Consensus       213 ~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  291 (376)
T 2dou_A          213 LALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRE  291 (376)
T ss_dssp             GGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             hhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            22    246799999999998665 5689999999999999887766665566666555555443    34455566778


Q ss_pred             HHHHHHHHHHcC
Q 013019          416 TALRMAEILEAH  427 (451)
Q Consensus       416 nA~~Lae~L~~~  427 (451)
                      +.+.+.+.|+++
T Consensus       292 ~~~~l~~~L~~~  303 (376)
T 2dou_A          292 RALGMAEALKGV  303 (376)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHh
Confidence            888899999876

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.89  E-value=1.3e-22  Score=202.16  Aligned_cols=223  Identities=16%  Similarity=0.172  Sum_probs=165.2

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all----~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      |.|++...+..+++++++++++|.+  +.+++++|++|+..++.+++    ++||+|+++++.|+++...+. .+...|+
T Consensus        35 ~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g~  113 (382)
T 4hvk_A           35 HSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGF  113 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcCC
Confidence            4455556777889999999999974  45666777799999999888    999999999999998766553 3456789


Q ss_pred             EEEEeCCC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCc
Q 013019          276 TATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGAD  349 (451)
Q Consensus       276 ~v~~vd~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaD  349 (451)
                      ++.+++..     |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+ +|+|++++.+... .....++|
T Consensus       114 ~~~~v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d  191 (382)
T 4hvk_A          114 EVEYIPVGKYGEVDVSFIDQKLRDD-TILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGAD  191 (382)
T ss_dssp             EEEEECBCTTSCBCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCS
T ss_pred             EEEEeccCCCCCcCHHHHHHHhccC-ceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCC
Confidence            98888753     899999999874 9999999999999999999999999999999 9999998765432 22245789


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-------HhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTAL  418 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-------~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA~  418 (451)
                      +++.|+||++++.+   .|+++.+++.  +++...       .......+....+.+...+    +.+....++..++++
T Consensus       192 ~~~~s~~K~~g~~g---~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~  266 (382)
T 4hvk_A          192 MLTISSNDIYGPKG---VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRD  266 (382)
T ss_dssp             EEEEESGGGTSCTT---CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeHHHhcCCCc---eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999887665   5666655433  111111       0112233444433333333    234555667778888


Q ss_pred             HHHHHHHcCCCeEE
Q 013019          419 RMAEILEAHPKVLL  432 (451)
Q Consensus       419 ~Lae~L~~~p~V~~  432 (451)
                      .+.+.|++.|++..
T Consensus       267 ~l~~~L~~~~~~~~  280 (382)
T 4hvk_A          267 RIIDNVLKIEESYL  280 (382)
T ss_dssp             HHHHHHTTSTTEEE
T ss_pred             HHHHHHhcCCCeEE
Confidence            99999998888754

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.89  E-value=6.7e-22  Score=202.95  Aligned_cols=229  Identities=17%  Similarity=0.149  Sum_probs=172.6

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhC----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          200 ASFEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       200 ~~~~Y~R~~npt~~~Lee~LA~l~g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      ..+.|+....+..+++.+++++.+|    .+..+++++|++|+..++.+++++||+|++..+.|.+....+    ...|.
T Consensus        90 ~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~----~~~g~  165 (421)
T 3l8a_A           90 HIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTI----RLNDH  165 (421)
T ss_dssp             CCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHH----HHTTE
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHH----HHCCC
Confidence            3467877777778888888888887    245677777779999999999999999999999999866443    34566


Q ss_pred             EEEEeCC--------CCHHHHHHhhcCCCeEEEEEeCCCCCcccc---ccHHHHHHHHHhcCCEEEEecCCCCCCc----
Q 013019          276 TATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN----  340 (451)
Q Consensus       276 ~v~~vd~--------~D~d~Le~ai~~~~tklV~lesPsNPtG~v---~DL~~IaelA~~~g~~lVVD~tfa~~~~----  340 (451)
                      ++..++.        .|+++|++++++.++++|++++|+||+|.+   .++++|.++|+++|++||+|++|.....    
T Consensus       166 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~  245 (421)
T 3l8a_A          166 RLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT  245 (421)
T ss_dssp             EEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred             EEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence            6665543        489999999983359999999999999988   4799999999999999999999764321    


Q ss_pred             ccc-cc-----CCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCC-CccHHHHHHHHHh----hHHHHH
Q 013019          341 QKA-LS-----LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRG----MKTLHL  408 (451)
Q Consensus       341 ~~p-l~-----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~-~ls~~~a~l~lrg----L~tl~~  408 (451)
                      ..+ ..     .+.++++.|++|.++.+| +++|+++++ +++++.++......+. ..+++.+..+...    .+.+..
T Consensus       246 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~  324 (421)
T 3l8a_A          246 HHSLNTLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEE  324 (421)
T ss_dssp             CCCGGGSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred             CccHHHcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHH
Confidence            111 11     245699999999998665 467888887 8888888876644433 4566554443333    334566


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          409 RVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      +.++..++.+.+.+.|+++|++..+
T Consensus       325 ~~~~~~~~~~~l~~~L~~~~~i~~~  349 (421)
T 3l8a_A          325 LKTVIEGNIKLVIKELEAKTKIKVM  349 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEe
Confidence            6777788899999999888877654

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.89  E-value=2.3e-22  Score=201.52  Aligned_cols=220  Identities=12%  Similarity=0.121  Sum_probs=167.2

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+++...+|+++|++++|.  ++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++
T Consensus        59 ~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~v~  134 (360)
T 3hdo_A           59 LRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTL----AEVQGARVRTFG  134 (360)
T ss_dssp             GGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHH----HHHHTCEEEEEC
T ss_pred             hhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHH----HHHCCCEEEEee
Confidence            4556667678999999999984  6788888889999999999999999999999999986643    445688888877


Q ss_pred             CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc----ccCCCcEEEECCcc
Q 013019          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----LSLGADLVLHSATK  357 (451)
Q Consensus       282 ~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p----l~~GaDiVv~S~SK  357 (451)
                      ..+...+++..+..++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.......    ...+.++++.|+||
T Consensus       135 ~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK  214 (360)
T 3hdo_A          135 LTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSK  214 (360)
T ss_dssp             BCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTT
T ss_pred             CCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchH
Confidence            54221222222212367999999999999999999999999999999999999874211111    12356699999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      .++.+| .++|+++++++++++++.....+  ..++..++.+...|   +.+..+.++..++.+.+.+.|+++ ++.
T Consensus       215 ~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~  287 (360)
T 3hdo_A          215 SYSLAG-MRIGLAIARPEVIAALDKIRDHY--NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYD  287 (360)
T ss_dssp             TTSCTT-SCCEEEECCHHHHHHHHHHSCSC--CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             hhcCCc-cceeeEeeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence            998665 56899999999999988776543  35566555444444   345666777888899999999887 553

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.89  E-value=6.7e-22  Score=198.44  Aligned_cols=218  Identities=14%  Similarity=0.133  Sum_probs=166.3

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+|+++...+|+++|++++|.  ++.+++++|++++..++.++  +||+|++..+.|.+....    +...|.++..++.
T Consensus        54 ~~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~----~~~~g~~~~~v~~  127 (364)
T 1lc5_A           54 ERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRA----LAQSGCEIRRWSL  127 (364)
T ss_dssp             GSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHH----HHHTTCEEEEEEC
T ss_pred             hcCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHH----HHHcCCeEEEEeC
Confidence            344556678999999999986  45666777789999999888  789999999999986643    3456777777654


Q ss_pred             C-----C-HHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc--cccc----cCC
Q 013019          283 A-----D-MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN--QKAL----SLG  347 (451)
Q Consensus       283 ~-----D-~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~--~~pl----~~G  347 (451)
                      .     + ++++.+.+++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.....  ...+    ..+
T Consensus       128 ~~~~~~~~l~~~~~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  206 (364)
T 1lc5_A          128 READGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNP  206 (364)
T ss_dssp             CGGGTTCCCTTHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCT
T ss_pred             CcccccchhHHHHHhccC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCC
Confidence            3     1 3545566655 4899999999999999998   89999999999999999999865321  1112    246


Q ss_pred             CcEEEECCcccCCccccceeEEEE-eCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv-~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA~~Lae~  423 (451)
                      .++++.|+||+++.+| .++|+++ ++++++++++.....+  ..++..++.+...|+.   +..+.++..++.+.+.+.
T Consensus       207 ~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  283 (364)
T 1lc5_A          207 HIWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRRQQMPW--SVNALAALAGEVALQDSAWQQATWHWLREEGARFYQA  283 (364)
T ss_dssp             TEEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHHHSCTT--CSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECchhhcCCc-cceEEEEECCHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999998665 5679999 9999999888765433  4567777666666653   455566677888899999


Q ss_pred             HHcCCCeEE
Q 013019          424 LEAHPKVLL  432 (451)
Q Consensus       424 L~~~p~V~~  432 (451)
                      |+++|++..
T Consensus       284 L~~~~~~~~  292 (364)
T 1lc5_A          284 LCQLPLLTV  292 (364)
T ss_dssp             HHTSTTEEE
T ss_pred             HhcCCCCEE
Confidence            998888753

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.89  E-value=4.3e-22  Score=198.64  Aligned_cols=220  Identities=17%  Similarity=0.164  Sum_probs=163.1

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCe--EEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~--VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .++...+|+++|++++|.+..+++++|++|+..++.+++.+||+  |+++.+.|...+... ......|.++..++.   
T Consensus        46 ~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~  124 (359)
T 3pj0_A           46 NGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLKELQQITPLLLGTANQ  124 (359)
T ss_dssp             BSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHHCCEEEECSCTTS
T ss_pred             CCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHHHhcCceEEecCCcCC
Confidence            46889999999999999988899999999999999999999987  555555443322110 111234788877764   


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCc-cccccHH---HHHHHHHhcCCEEEEecCCCCCC------ccccccCCCcEE
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVK---LVSDLCHKKGAIVCIDGTFATPL------NQKALSLGADLV  351 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPt-G~v~DL~---~IaelA~~~g~~lVVD~tfa~~~------~~~pl~~GaDiV  351 (451)
                       .|+++|+++ .+ ++++|++|+|+||+ |.+.+++   +|.++|++||++||+|+++....      ....+..+.|++
T Consensus       125 ~~d~~~l~~~-~~-~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~  202 (359)
T 3pj0_A          125 LLTIDDIKSL-RE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSV  202 (359)
T ss_dssp             CCCHHHHHTC-SS-CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEE
T ss_pred             CcCHHHHHhc-cC-CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEE
Confidence             379999988 55 59999999999998 6887755   55999999999999999864321      122233578999


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCc--cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~l--s~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      +.|+||+++++.   +|+++++++++++++..+...+...  ....+......++....++++..++++.+.+.|+++|+
T Consensus       203 ~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g  279 (359)
T 3pj0_A          203 YVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSG  279 (359)
T ss_dssp             EEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTT
T ss_pred             EEeccccCCCcc---eEEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCC
Confidence            999999998874   6899999999999988766555332  12222222345555556677788899999999999988


Q ss_pred             eEEE
Q 013019          430 VLLL  433 (451)
Q Consensus       430 V~~V  433 (451)
                      +...
T Consensus       280 ~~~~  283 (359)
T 3pj0_A          280 VKTV  283 (359)
T ss_dssp             EEEE
T ss_pred             ceee
Confidence            8543

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.89  E-value=6.4e-22  Score=201.69  Aligned_cols=214  Identities=18%  Similarity=0.246  Sum_probs=174.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ..+...+|+++|++++|.++.+++++|++|+..++.++ +++||+|+++.+.|.++...    +...|+++.+++.    
T Consensus        61 ~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~  136 (399)
T 2oga_A           61 LGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLA----VSATGATPVPVEPHEDH  136 (399)
T ss_dssp             SSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCSSS
T ss_pred             CchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHH----HHHCCCEEEEEecCCCC
Confidence            34778999999999999988999999999999999999 89999999999999986643    4456888887753    


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCC--CcEEEECC--c
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--T  356 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~G--aDiVv~S~--S  356 (451)
                        .|+++|++++++ ++++|+   |+||+|.+.|+++|.++|+++|+++|+|++++.+.......++  .|+++.|+  +
T Consensus       137 ~~~d~~~l~~~i~~-~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~s  212 (399)
T 2oga_A          137 PTLDPLLVEKAITP-RTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPG  212 (399)
T ss_dssp             SSBCHHHHHHHCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTT
T ss_pred             CCcCHHHHHHhcCC-CCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCC
Confidence              379999999987 489887   5789999999999999999999999999999765322222234  69999999  7


Q ss_pred             ccCCccccceeEEEEeC-HHHHHHHHHHhHhh----------C--CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~----------G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~  423 (451)
                      |+++++|  ++|+++++ ++++++++..+...          |  ..+++..++++..+++.+....++..++++.+.+.
T Consensus       213 K~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~  290 (399)
T 2oga_A          213 KNLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSG  290 (399)
T ss_dssp             SSSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCC--ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998876  57888875 78888887654321          1  24578888887788888877778888889999999


Q ss_pred             HHcCCCeE
Q 013019          424 LEAHPKVL  431 (451)
Q Consensus       424 L~~~p~V~  431 (451)
                      |++.|+++
T Consensus       291 L~~~~g~~  298 (399)
T 2oga_A          291 LAGLPGIG  298 (399)
T ss_dssp             TTTCTTCB
T ss_pred             hccCCCcc
Confidence            98887653

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.89  E-value=3.4e-22  Score=200.04  Aligned_cols=214  Identities=17%  Similarity=0.177  Sum_probs=162.7

Q ss_pred             chhHHHHHHHHHhhhCCCc----EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC-
Q 013019          209 NPTTVVVEEKMSALEGAES----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~----~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~-  283 (451)
                      .+..+++++++++++|.+.    .+++++|++|+. ++.+++++||+|+++++.|.+.  .+...+...|+++..++.. 
T Consensus        34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~  110 (384)
T 3zrp_A           34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSP  110 (384)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCST
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCC
Confidence            4567889999999999754    667778889999 9999999999999999988663  2334456779998888753 


Q ss_pred             ----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEEEECCccc
Q 013019          284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATKF  358 (451)
Q Consensus       284 ----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S~SK~  358 (451)
                          |+++|++++++.++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+... .....++|+++.|++|+
T Consensus       111 ~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~  190 (384)
T 3zrp_A          111 GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKA  190 (384)
T ss_dssp             TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTST
T ss_pred             CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCccc
Confidence                8999999998745999999999999999999999999999999999999998755322 22345799999999999


Q ss_pred             CCccccceeEEEEeCHHHHHHH-------------HHHhHhh-------C---CCccHHHHHHHHHhhHH-----HHHHH
Q 013019          359 IGGHNDVLAGSISGSGKLVTQI-------------RNLHHVL-------G---GALNPNAAYLIIRGMKT-----LHLRV  410 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~~eli~~l-------------r~~~~~~-------G---~~ls~~~a~l~lrgL~t-----l~~Rl  410 (451)
                      ++|+.  .+|++++++++++++             ..+....       +   ++.+......+...++.     +....
T Consensus       191 ~~~~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~  268 (384)
T 3zrp_A          191 LGSAA--GLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRI  268 (384)
T ss_dssp             TCCCS--SEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ccCCC--ceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            87553  379999999988877             3222111       0   13344333333333332     34556


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 013019          411 QQQNSTALRMAEILEAH  427 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~  427 (451)
                      ++..++++.+.+.|+++
T Consensus       269 ~~~~~~~~~l~~~L~~~  285 (384)
T 3zrp_A          269 KRHTMVASAIRAGLEAL  285 (384)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHC
Confidence            67778888999999887

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.89  E-value=1e-21  Score=202.46  Aligned_cols=218  Identities=14%  Similarity=0.122  Sum_probs=165.7

Q ss_pred             chhHHHHHHHHHhhhC-------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          209 NPTTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       209 npt~~~Lee~LA~l~g-------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      .+...+|+++++++++       .++.+++++|++|+..++.+++++||+|++++|.|.+...    .+...|+++..++
T Consensus        95 ~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~  170 (427)
T 3dyd_A           95 SIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT----LAESMGIEVKLYN  170 (427)
T ss_dssp             TTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEEE
T ss_pred             CCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHcCCEEEEEe
Confidence            3456789999999987       3677788888899999999999999999999999987653    3455677776654


Q ss_pred             C-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-----cccccC
Q 013019          282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL  346 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-----~~pl~~  346 (451)
                      .       .|+++|+++++++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     .....+
T Consensus       171 ~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~  249 (427)
T 3dyd_A          171 LLPEKSWEIDLKQLEYLIDEK-TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL  249 (427)
T ss_dssp             EEGGGTTEECHHHHHSSCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGG
T ss_pred             cccccCCCCCHHHHHHHhccC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHh
Confidence            2       3899999999874 999999999999999999   99999999999999999999875321     111122


Q ss_pred             CCc---EEEECCcccCCccccceeEEEEeC-------HHHHHHHHHHhHhhCCCccHHHHHHHHHhhH-----HHHHHHH
Q 013019          347 GAD---LVLHSATKFIGGHNDVLAGSISGS-------GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQ  411 (451)
Q Consensus       347 GaD---iVv~S~SK~l~G~gdv~gG~Iv~~-------~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~-----tl~~Rl~  411 (451)
                      +.+   +++.|+||.++++| .+.|+++++       +++++.++...... ...++..+..+...|+     .+..+.+
T Consensus       250 ~~~~~vi~~~S~sK~~~~~G-~riG~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~a~~~~L~~~~~~~~~~~~~  327 (427)
T 3dyd_A          250 STDVPILSCGGLAKRWLVPG-WRLGWILIHDRRDIFGNEIRDGLVKLSQRI-LGPCTIVQGALKSILCRTPGEFYHNTLS  327 (427)
T ss_dssp             CSSCCEEEEEESTTTSSCGG-GCCEEEEEECSTTSSHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCCCcEEEEeeccccCCCcC-cceEEEEecCcchhhHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            333   77889999988777 456777765       46777776654332 2345555554444443     4566677


Q ss_pred             HHHHHHHHHHHHHHcCCCeEEE
Q 013019          412 QQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      +..++++.+.+.|+++|++..+
T Consensus       328 ~~~~~~~~l~~~L~~~~g~~~~  349 (427)
T 3dyd_A          328 FLKSNADLCYGALAAIPGLRPV  349 (427)
T ss_dssp             HHHHHHHHHHHHHHHSTTEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCceec
Confidence            7888899999999999887543

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.89  E-value=2.1e-22  Score=202.02  Aligned_cols=214  Identities=13%  Similarity=0.125  Sum_probs=162.1

Q ss_pred             HHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC-
Q 013019          213 VVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  283 (451)
Q Consensus       213 ~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~-  283 (451)
                      .++++.++++++        .++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++.. 
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~  136 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHL----LSATQREGIFIDATG  136 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHH----HHHHTCCEEEEECTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHH----HHHcCCEEEEccCCC
Confidence            445566655544        36788888888999999999999999999999999986643    34457777777654 


Q ss_pred             --CHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc---c--cc-c---CCCc
Q 013019          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---K--AL-S---LGAD  349 (451)
Q Consensus       284 --D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~---~--pl-~---~GaD  349 (451)
                        |+++|+++++++ +++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....   .  ++ .   .+.+
T Consensus       137 ~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  215 (377)
T 3fdb_A          137 GINLHDVEKGFQAG-ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVC  215 (377)
T ss_dssp             SCCHHHHHHHHHTT-CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHE
T ss_pred             CCCHHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcE
Confidence              899999999875 899999999999999984   677888899999999999998753211   1  11 1   2345


Q ss_pred             EEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~Lae~L  424 (451)
                      +++.|+||.++.+| .++|+++. +++++++++..........++..++.+...++.    +..+.++..++.+.+.+.|
T Consensus       216 i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  294 (377)
T 3fdb_A          216 ITITAPSKAWNIAG-LKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEI  294 (377)
T ss_dssp             EEEECSTTTTTCGG-GCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeChHhccCcc-hhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999997666 46776665 788888888766555556667666555544443    5566777788899999999


Q ss_pred             Hc-CCCeEE
Q 013019          425 EA-HPKVLL  432 (451)
Q Consensus       425 ~~-~p~V~~  432 (451)
                      ++ .|++..
T Consensus       295 ~~~~~~~~~  303 (377)
T 3fdb_A          295 PKRIPGAKI  303 (377)
T ss_dssp             HHHSTTCEE
T ss_pred             HhhCCCceE
Confidence            88 677644

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.89  E-value=1.9e-21  Score=196.47  Aligned_cols=213  Identities=14%  Similarity=0.115  Sum_probs=161.8

Q ss_pred             HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ..+|++++++++    |.    + +.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.++..++.
T Consensus        69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~  144 (386)
T 1u08_A           69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA----IALSGGIVKRMAL  144 (386)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeec
Confidence            456777777763    52    4 677788888999999999999999999999999986643    4456777776643


Q ss_pred             ------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-------cccc--
Q 013019          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL--  344 (451)
Q Consensus       283 ------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-------~~pl--  344 (451)
                            .|+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.....       ...+  
T Consensus       145 ~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  223 (386)
T 1u08_A          145 QPPHFRVDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQ  223 (386)
T ss_dssp             CTTTCCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHH
T ss_pred             CcccCcCCHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccC
Confidence                  479999999976 4999999999999999985   78999999999999999999875321       1111  


Q ss_pred             cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Q 013019          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  420 (451)
Q Consensus       345 ~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~L  420 (451)
                      ..+.|+++.|+||+++.+| .+.|+++++++++++++..........++..+..+...|+.    +....++..++.+.+
T Consensus       224 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  302 (386)
T 1u08_A          224 LRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDIL  302 (386)
T ss_dssp             HHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHH
T ss_pred             ccCcEEEEecchhhcCCcc-cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            2468999999999998666 56799999999999888766544444555554444444442    444556667788888


Q ss_pred             HHHHHcCCCeE
Q 013019          421 AEILEAHPKVL  431 (451)
Q Consensus       421 ae~L~~~p~V~  431 (451)
                      .+.|+++ ++.
T Consensus       303 ~~~L~~~-g~~  312 (386)
T 1u08_A          303 VNALNES-RLE  312 (386)
T ss_dssp             HHHTTSS-SCE
T ss_pred             HHHHHHC-CCe
Confidence            8888876 443

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.89  E-value=5.8e-22  Score=199.05  Aligned_cols=220  Identities=13%  Similarity=0.079  Sum_probs=167.8

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      +...+|+++|++++|.+  +.+++++|++|+..++.++ +++||+|+++++.|.+....+....+..|.++..++.    
T Consensus        59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~  138 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL  138 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCC
Confidence            67889999999999974  6778888999999999999 8999999999999998765554445566888888765    


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHH----hcCCEEEEecCCCCCCcc-ccccCCCcEEEEC
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH----KKGAIVCIDGTFATPLNQ-KALSLGADLVLHS  354 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~----~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S  354 (451)
                         .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+    ++|+++|+|++++.+... .....+.|+++.|
T Consensus       139 ~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s  217 (390)
T 1elu_A          139 NQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFT  217 (390)
T ss_dssp             SSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEE
T ss_pred             CccchHHHHHHhcCC-CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEcc
Confidence               368999999987 4999999999999999999999999999    999999999998754221 1113578999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHh----------------------HhhCCCccHHHHHH---HHHhhHH---H
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAYL---IIRGMKT---L  406 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~----------------------~~~G~~ls~~~a~l---~lrgL~t---l  406 (451)
                      ++|++.|+.  ..|+++++++++++++...                      ....++.+......   +++.++.   +
T Consensus       218 ~~K~~~~~~--g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~  295 (390)
T 1elu_A          218 GHKWFAGPA--GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA  295 (390)
T ss_dssp             SSSTTCCCT--TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred             ccccccCCC--ceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCH
Confidence            999555443  2699999988877665321                      11122334433332   2333323   5


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          407 HLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      ....++..++++.+.+.|++.|+++.
T Consensus       296 ~~~~~~~~~~~~~l~~~L~~~~g~~~  321 (390)
T 1elu_A          296 EERYQAICQRSEFLWRGLNQLPHVHC  321 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence            55677788889999999999887743

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.89  E-value=1.9e-21  Score=196.39  Aligned_cols=210  Identities=11%  Similarity=0.158  Sum_probs=162.4

Q ss_pred             HHHHHHHHHhhh----C----CCc-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALE----G----AES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----ae~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...|++.+++++    |    .++ .+++++|++|+..++.+++++||+|+++++.|.+....+    ...|.++..++.
T Consensus        65 ~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~~  140 (389)
T 1gd9_A           65 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPT  140 (389)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHCCCEEEEecc
Confidence            466777777776    6    256 777888889999999999999999999999999866433    445777766542


Q ss_pred             -------CCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCcc-----cccc--
Q 013019          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS--  345 (451)
Q Consensus       283 -------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~~-----~pl~--  345 (451)
                             .|+++|++++++ ++++|++++|+||||.+.   ++++|.++|+++|+++|+|++|+.....     ....  
T Consensus       141 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  219 (389)
T 1gd9_A          141 YEEDEFRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD  219 (389)
T ss_dssp             CGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred             CCccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhcc
Confidence                   378999999987 499999999999999998   5999999999999999999998764321     1112  


Q ss_pred             --CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH------HHHHHHHHHHHHH
Q 013019          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK------TLHLRVQQQNSTA  417 (451)
Q Consensus       346 --~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~------tl~~Rl~~~~~nA  417 (451)
                        .+.|+++.|+||.++.+| .++|+++++++++++++..........++...+.+...|+      .+....++..+++
T Consensus       220 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  298 (389)
T 1gd9_A          220 GMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR  298 (389)
T ss_dssp             TCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecChhhcCCcc-cceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence              356899999999998665 5679999999999998877655545556666555444443      2444556677888


Q ss_pred             HHHHHHHHcC
Q 013019          418 LRMAEILEAH  427 (451)
Q Consensus       418 ~~Lae~L~~~  427 (451)
                      +.+.+.|+++
T Consensus       299 ~~l~~~L~~~  308 (389)
T 1gd9_A          299 KLVWKRLNEM  308 (389)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            8889999886

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.89  E-value=5.6e-22  Score=202.70  Aligned_cols=211  Identities=9%  Similarity=0.078  Sum_probs=162.3

Q ss_pred             hHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          211 TTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       211 t~~~Lee~LA~l~----ga-----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ....|+++|++++    |.     ++.+++++|++|+..++.+++++||+|+++++.|.+....+    ...|.++..++
T Consensus        86 g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v~  161 (404)
T 2o1b_A           86 GKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGV----LLADGKPVPLN  161 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHH----HHTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHCCCEEEEec
Confidence            4567888888876    74     35666666779999999999999999999999999976443    44577766654


Q ss_pred             C------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc----cccccC--
Q 013019          282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL--  346 (451)
Q Consensus       282 ~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~----~~pl~~--  346 (451)
                      .      .|+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.....    .....+  
T Consensus       162 ~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  240 (404)
T 2o1b_A          162 LEPPHYLPDWSKVDSQIID-KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASEN  240 (404)
T ss_dssp             CCTTTCCCCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTT
T ss_pred             cCcccCcCCHHHHHHhhcc-CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence            2      367888888875 4899999999999999985   78899999999999999999875432    112222  


Q ss_pred             --CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHH
Q 013019          347 --GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM  420 (451)
Q Consensus       347 --GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~L  420 (451)
                        +.++++.|+||+++.+| .++|+++++++++++++......+...++...+.+...|+.    +....++..++.+.+
T Consensus       241 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  319 (404)
T 2o1b_A          241 GKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRF  319 (404)
T ss_dssp             HHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecchhccCch-hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence              45799999999998665 56899999999999998877666666677766655555543    444556677788889


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|+++
T Consensus       320 ~~~L~~~  326 (404)
T 2o1b_A          320 EAMLAKA  326 (404)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999887

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.89  E-value=1e-21  Score=198.68  Aligned_cols=209  Identities=15%  Similarity=0.152  Sum_probs=162.5

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC
Q 013019          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~  283 (451)
                      ...|++.+++++    |    .++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++..
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~  145 (391)
T 3h14_A           70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQI----LRALGLVPVDLPTA  145 (391)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEECC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeecC
Confidence            456777777765    2    36778888888999999999999999999999999986643    44568887776542


Q ss_pred             -------CHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc----cccccC-CC
Q 013019          284 -------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL-GA  348 (451)
Q Consensus       284 -------D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~----~~pl~~-Ga  348 (451)
                             |+++|+++    ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+....    .....+ +.
T Consensus       146 ~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  221 (391)
T 3h14_A          146 PENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE  221 (391)
T ss_dssp             GGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSS
T ss_pred             cccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCC
Confidence                   78888766    3899999999999999987   88999999999999999999875321    112222 45


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR---GMKTLHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lr---gL~tl~~Rl~~~~~nA~~Lae~L~  425 (451)
                      ++++.|+||.++.+| .++|+++++++++++++......+...++..++.+..   ..+.+..+.++..++.+.+.+.|+
T Consensus       222 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~  300 (391)
T 3h14_A          222 CYVINSFSKYFSMTG-WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLP  300 (391)
T ss_dssp             SEEEEESSSTTCCTT-SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEechhccCCcc-ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999997565 5689999999999999887777666666666554433   345566667778888889999998


Q ss_pred             cCCC
Q 013019          426 AHPK  429 (451)
Q Consensus       426 ~~p~  429 (451)
                      +++.
T Consensus       301 ~~~~  304 (391)
T 3h14_A          301 KAGF  304 (391)
T ss_dssp             HHTC
T ss_pred             HcCC
Confidence            7753

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.89  E-value=4.5e-22  Score=203.98  Aligned_cols=220  Identities=16%  Similarity=0.158  Sum_probs=166.4

Q ss_pred             CCCchh-HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHc--cCCC--eEEEcCCCCcchHHHHHHhhhc
Q 013019          206 RYGNPT-TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALV--PAGG--HIVTTTDCYRKTRIFIETVLPK  272 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all--~~GD--~VIv~~~~Y~~t~~~l~~~l~~  272 (451)
                      +|+.+. ..+|++.++++++        .++.+++++|++|+..++.+++  ++||  +|+++.+.|.+....+    ..
T Consensus        77 ~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~----~~  152 (437)
T 3g0t_A           77 IYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQC----RI  152 (437)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHH----HH
T ss_pred             CCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHH----HH
Confidence            344443 4678888888776        3567777777799999999998  9999  9999999999866443    34


Q ss_pred             CCcEEEEeCC------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc--
Q 013019          273 MGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--  341 (451)
Q Consensus       273 ~Gi~v~~vd~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~--  341 (451)
                      .|.++..++.      .|+++|+++++..++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.....  
T Consensus       153 ~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~  232 (437)
T 3g0t_A          153 LGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD  232 (437)
T ss_dssp             HTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC
T ss_pred             cCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC
Confidence            5666666653      27899999994335999999999999999986   778899999999999999998643211  


Q ss_pred             ----------ccc--cCCCcEEEECCcccCCccccceeEEEEeCHHHHH-H-----------------HHHHhHhhCCCc
Q 013019          342 ----------KAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-Q-----------------IRNLHHVLGGAL  391 (451)
Q Consensus       342 ----------~pl--~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-~-----------------lr~~~~~~G~~l  391 (451)
                                ..+  ..+.++++.|+||.++.+| .++|++++++++++ +                 ++..........
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (437)
T 3g0t_A          233 YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGA  311 (437)
T ss_dssp             CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSS
T ss_pred             cCcccccchhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCC
Confidence                      111  2466799999999998665 56899999999888 7                 665555444556


Q ss_pred             cHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          392 NPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       392 s~~~a~l~lrgL~t-------l~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      ++..++.+...++.       +..+.++..++.+.+.+.|+++ ++.
T Consensus       312 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  357 (437)
T 3g0t_A          312 THSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFN  357 (437)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEE
T ss_pred             CHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCE
Confidence            67666665555544       4556777888899999999988 554

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.89  E-value=2.8e-21  Score=197.28  Aligned_cols=212  Identities=12%  Similarity=0.113  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          210 PTTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       210 pt~~~Lee~LA~l~----ga-----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +....|++.+++++    |.     ++.+++++|++|+..++.+++++||+|+++++.|.+....+    ...|.++..+
T Consensus        75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~~  150 (412)
T 2x5d_A           75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGA----VIAGAQVRSV  150 (412)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHHTCEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEEe
Confidence            44567888888877    63     46777888889999999999999999999999999866443    3457777666


Q ss_pred             CCC-------CHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-------ccc
Q 013019          281 DPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKA  343 (451)
Q Consensus       281 d~~-------D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-------~~p  343 (451)
                      +..       |+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|.....       ...
T Consensus       151 ~~~~~~~~~~d~~~l~~~i~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  229 (412)
T 2x5d_A          151 PLVPGIDFFNELERAIRESIP-KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQ  229 (412)
T ss_dssp             ECSTTSCHHHHHHHHHHTEES-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred             ecCCccCCCCCHHHHHHhccc-CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhh
Confidence            432       56889999986 4899999999999999986   68899999999999999999876432       111


Q ss_pred             cc--CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 013019          344 LS--LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA  417 (451)
Q Consensus       344 l~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA  417 (451)
                      +.  .+.++++.|+||+++.+| .+.|+++++++++++++......+...++..++.+...|+    .+....++..++.
T Consensus       230 ~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  308 (412)
T 2x5d_A          230 VPGAKDIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRR  308 (412)
T ss_dssp             STTGGGTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred             ccCccCcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            11  367899999999998665 4689999999999998877766555666766655554443    3455566677888


Q ss_pred             HHHHHHHHcC
Q 013019          418 LRMAEILEAH  427 (451)
Q Consensus       418 ~~Lae~L~~~  427 (451)
                      +.+.+.|+++
T Consensus       309 ~~l~~~L~~~  318 (412)
T 2x5d_A          309 DVLVKGLREA  318 (412)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
Confidence            8888888875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.89  E-value=2.1e-21  Score=193.55  Aligned_cols=217  Identities=14%  Similarity=0.153  Sum_probs=166.2

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+++...+|+++|+++++.  ++.+++++|++|+..++.++    |+|+++.+.|.+....    +...|.++..++
T Consensus        55 ~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~----~~~~g~~~~~~~  126 (361)
T 3ftb_A           55 LGVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEIN----AKKHGVSVVFSY  126 (361)
T ss_dssp             GGSCCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred             hcCCCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHH----HHHcCCeEEEee
Confidence            3455677788999999999985  45666677789999988876    9999999999986643    445688877765


Q ss_pred             C-----CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc---cccc----cC
Q 013019          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---QKAL----SL  346 (451)
Q Consensus       282 ~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~---~~pl----~~  346 (451)
                      .     .++++|++++++  +++|++++|+||||.+.+   +++|+++|++||+++|+|++|+....   ....    ..
T Consensus       127 ~~~~~~~~~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  204 (361)
T 3ftb_A          127 LDENMCIDYEDIISKIDD--VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNY  204 (361)
T ss_dssp             CCTTSCCCHHHHHHHTTT--CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTC
T ss_pred             cCcccCCCHHHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccC
Confidence            3     367899999976  899999999999999985   67788888899999999999864322   1111    22


Q ss_pred             CCcEEEECCcccCCccccceeEEEE-eCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHH
Q 013019          347 GADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAE  422 (451)
Q Consensus       347 GaDiVv~S~SK~l~G~gdv~gG~Iv-~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~Lae  422 (451)
                      +.++++.|+||.++.+| .++|+++ ++++++++++.....+  ..++..++.+...+   +.+..+.++..++.+.+.+
T Consensus       205 ~~~i~~~s~sK~~~~~G-~r~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~  281 (361)
T 3ftb_A          205 SCLFIIRAMTKFFAMPG-IRFGYGITNNKEIAAKIKAKQNPW--NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIE  281 (361)
T ss_dssp             SSEEEEEESSSTTSCGG-GCCEEEEESCHHHHHHHHTTSCTT--CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeChhhcCCCC-cceeEEEeCCHHHHHHHHhhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            34588999999998665 4678877 8999998888765543  45666665555544   4456667778889999999


Q ss_pred             HHHcCCCeEEE
Q 013019          423 ILEAHPKVLLL  433 (451)
Q Consensus       423 ~L~~~p~V~~V  433 (451)
                      .|+++|++..+
T Consensus       282 ~l~~~~~~~~~  292 (361)
T 3ftb_A          282 ELNKIGFIKRV  292 (361)
T ss_dssp             HHHHSSSEEEE
T ss_pred             HHHhCCCCcee
Confidence            99999988634

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.88  E-value=5.4e-21  Score=193.21  Aligned_cols=210  Identities=18%  Similarity=0.141  Sum_probs=159.0

Q ss_pred             HHHHHHHHHhhhC-----CC-cEEEeCCHHHHHHHHHHHHccCC-----CeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          212 TVVVEEKMSALEG-----AE-STVIMASGMSASTVMLLALVPAG-----GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       212 ~~~Lee~LA~l~g-----ae-~~vv~sSG~aAi~~al~all~~G-----D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ++++.+.+.+.+|     .+ +.+++++|++|+..++.+++++|     |+|+++.+.|.+...    .+...|.++..+
T Consensus        72 r~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~----~~~~~g~~~~~v  147 (396)
T 3jtx_A           72 RQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG----ATLLGGGEIHFA  147 (396)
T ss_dssp             HHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH----HHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH----HHHHcCCEEEEe
Confidence            3344444444445     34 67777788899999999999997     799999999987654    344568877776


Q ss_pred             CC------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccH---HHHHHHHHhcCCEEEEecCCCCCCcc--ccc-----
Q 013019          281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ--KAL-----  344 (451)
Q Consensus       281 d~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL---~~IaelA~~~g~~lVVD~tfa~~~~~--~pl-----  344 (451)
                      +.      .|+++|++++++ ++++|++++|+||||.+.+.   ++|+++|+++|+++|+|++|......  .+.     
T Consensus       148 ~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  226 (396)
T 3jtx_A          148 NCPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQA  226 (396)
T ss_dssp             ECCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHH
T ss_pred             ecCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhh
Confidence            53      377888888877 49999999999999999865   55999999999999999998754221  111     


Q ss_pred             ------cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHH
Q 013019          345 ------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNS  415 (451)
Q Consensus       345 ------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~  415 (451)
                            ..+.++++.|+||.++.+| .++|+++++++++++++......+...++..+..+...+   +.+..+.++..+
T Consensus       227 ~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  305 (396)
T 3jtx_A          227 AAQLGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQE  305 (396)
T ss_dssp             HHHTTCCCTTEEEEEESTTTSSCGG-GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             hhhcccccCcEEEEeccccccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                  2567899999999887666 568999999999999988777766677777666555444   445566677778


Q ss_pred             HHHHHHHHHHcC
Q 013019          416 TALRMAEILEAH  427 (451)
Q Consensus       416 nA~~Lae~L~~~  427 (451)
                      +.+.+.+.|+++
T Consensus       306 ~~~~l~~~l~~~  317 (396)
T 3jtx_A          306 KFERVIPILQQV  317 (396)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc
Confidence            888888888775

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.88  E-value=4.6e-21  Score=195.38  Aligned_cols=214  Identities=14%  Similarity=0.159  Sum_probs=160.5

Q ss_pred             HHHHHHHHHhhh----C--C--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          212 TVVVEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----g--a--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ..+|++.+++++    |  .  ++.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.++..++. 
T Consensus        80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~  155 (406)
T 1xi9_A           80 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGL----VKFYGGKPVEYRTI  155 (406)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeecC
Confidence            456777777765    2  2  5677777778999999999999999999999999876543    3456777666542 


Q ss_pred             ------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----cc--ccCC
Q 013019          283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA--LSLG  347 (451)
Q Consensus       283 ------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~p--l~~G  347 (451)
                            .|+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....    ..  ++.+
T Consensus       156 ~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  234 (406)
T 1xi9_A          156 EEEDWQPDIDDIRKKITD-RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD  234 (406)
T ss_dssp             GGGTSEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS
T ss_pred             CCcCCcCCHHHHHHhhCc-CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCC
Confidence                  279999999987 4999999999999999875   899999999999999999998754321    11  1135


Q ss_pred             C-cEEEECCcccCCccccceeEEEE--eCH----HHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHH
Q 013019          348 A-DLVLHSATKFIGGHNDVLAGSIS--GSG----KLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNST  416 (451)
Q Consensus       348 a-DiVv~S~SK~l~G~gdv~gG~Iv--~~~----eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~n  416 (451)
                      . |+++.|+||+++.+| .+.|+++  +++    +++++++...... ...++..++.+...|    +.+....++..++
T Consensus       235 ~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  312 (406)
T 1xi9_A          235 VPVIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKER  312 (406)
T ss_dssp             SCEEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred             ceEEEEeccccccCCCc-cEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            6 899999999998665 4578888  888    9999888766543 344555444444444    2344455667778


Q ss_pred             HHHHHHHHHcCCCeEE
Q 013019          417 ALRMAEILEAHPKVLL  432 (451)
Q Consensus       417 A~~Lae~L~~~p~V~~  432 (451)
                      .+.+.+.|++.|++..
T Consensus       313 ~~~l~~~L~~~~~~~~  328 (406)
T 1xi9_A          313 RDYIYKRLNEIPGIST  328 (406)
T ss_dssp             HHHHHHHHHTSTTEEC
T ss_pred             HHHHHHHHHhCCCCee
Confidence            8889999998887643

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.88  E-value=4.6e-22  Score=201.04  Aligned_cols=224  Identities=15%  Similarity=0.137  Sum_probs=164.3

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCC-eEEEcCCCCcchHHHHHHhhhcCC
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all----~~GD-~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      +.|+++..+..+++++++++++|.+  +.+++++|++|+..++.+++    ++|| +|+++++.|+++...+.. +...|
T Consensus        55 ~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~-~~~~g  133 (400)
T 3vax_A           55 HEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEH-LAGRG  133 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHH-HHTTT
T ss_pred             chhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHH-HHhcC
Confidence            4556666677889999999999974  67777788899999999987    8999 999999999987766543 35678


Q ss_pred             cEEEEeCCC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc-ccCCC
Q 013019          275 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-LSLGA  348 (451)
Q Consensus       275 i~v~~vd~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p-l~~Ga  348 (451)
                      +++.+++..     |+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+..... ... +
T Consensus       134 ~~~~~v~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~  211 (400)
T 3vax_A          134 FEVDFLTPGPSGRISVEGVMERLRPD-TLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-I  211 (400)
T ss_dssp             CEEEEECCCTTCCCCHHHHHTTCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-C
T ss_pred             CeEEEEccCCCCCcCHHHHHHhcCCC-ceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-C
Confidence            998888753     899999999874 99999999999999999999999999999999999999876543222 223 8


Q ss_pred             cEEEECCcccCCccccceeEEEE-eCH-HHH---HHHHHHh-------HhhCCCccHHHHHHHHHhhHH----HHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSIS-GSG-KLV---TQIRNLH-------HVLGGALNPNAAYLIIRGMKT----LHLRVQQ  412 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv-~~~-eli---~~lr~~~-------~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~  412 (451)
                      |+++.|++|.+++.+   .|+++ .++ ++.   ..++...       .......+....+.+..+++.    +....++
T Consensus       212 d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  288 (400)
T 3vax_A          212 DMISISGHKIGAPKG---VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVA  288 (400)
T ss_dssp             SEEEEETGGGTSCSS---CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             cEEEEeHHHhCCCCc---eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999766554   45655 544 221   1111111       111233444444433344433    3445566


Q ss_pred             HHHHHHHHHHHHHcCCCeEE
Q 013019          413 QNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~p~V~~  432 (451)
                      ..++++.+.+.|+ .+++..
T Consensus       289 ~~~~~~~l~~~L~-~~~~~~  307 (400)
T 3vax_A          289 AQDLRSRLLAGLA-STSFQV  307 (400)
T ss_dssp             HHHHHHHHHHHHT-TTTCEE
T ss_pred             HHHHHHHHHHhhC-CCCEEE
Confidence            6777888888888 777753

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.88  E-value=1.5e-21  Score=197.01  Aligned_cols=217  Identities=14%  Similarity=0.144  Sum_probs=164.3

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          209 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae---~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .+..+++++++++++|.+   ..+++++|++|+..++.+++++||+|+++++.|.+.  .+...+...|.++..++.   
T Consensus        66 ~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~  143 (393)
T 1vjo_A           66 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTISKPWG  143 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEEecCCC
Confidence            356788999999999974   456667788999999999999999999999999872  122345567888777753   


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcccC
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l  359 (451)
                        .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. ......++|+++.|++|++
T Consensus       144 ~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l  223 (393)
T 1vjo_A          144 EVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGL  223 (393)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred             CCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccc
Confidence              5899999999761389999999999999999999999999999999999999873321 1112347899999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHh--------------------HhhCCCccHHHHHHHHHhhHHH-----HHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLH--------------------HVLGGALNPNAAYLIIRGMKTL-----HLRVQQQN  414 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~--------------------~~~G~~ls~~~a~l~lrgL~tl-----~~Rl~~~~  414 (451)
                      ++++  ..|+++++++++++++...                    ...+++.+......+...++.+     ....++..
T Consensus       224 ~~~~--~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  301 (393)
T 1vjo_A          224 GCSP--GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQ  301 (393)
T ss_dssp             CSCS--SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cCCC--ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            8876  4699999999888775320                    0011145555555444455443     34566777


Q ss_pred             HHHHHHHHHHHcCCCe
Q 013019          415 STALRMAEILEAHPKV  430 (451)
Q Consensus       415 ~nA~~Lae~L~~~p~V  430 (451)
                      ++++.+.+.|++. ++
T Consensus       302 ~~~~~l~~~L~~~-g~  316 (393)
T 1vjo_A          302 KNVEYLWERLEDI-GL  316 (393)
T ss_dssp             HHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHc-CC
Confidence            8888999999876 44

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.88  E-value=1.1e-21  Score=199.00  Aligned_cols=170  Identities=10%  Similarity=0.090  Sum_probs=138.8

Q ss_pred             chhHHHHHHHHHhhhCCCc--EE-EeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC--
Q 013019          209 NPTTVVVEEKMSALEGAES--TV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~--~v-v~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~--  283 (451)
                      .+...++++++++++|.+.  .+ +++||++|+..++.+++++||+|+++++.|.+..  +...+...|+++..++..  
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~  120 (416)
T 3isl_A           43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWG  120 (416)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCC
Confidence            4557889999999999743  34 5678889999999999999999999999987632  334566778888887643  


Q ss_pred             ---CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcccC
Q 013019          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (451)
Q Consensus       284 ---D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l  359 (451)
                         |+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......|+|+++.|++|++
T Consensus       121 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l  200 (416)
T 3isl_A          121 TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCL  200 (416)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTT
T ss_pred             CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCcccc
Confidence               899999999832489999999999999999999999999999999999999875432 2233468999999999986


Q ss_pred             CccccceeEEEEeCHHHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRN  382 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~  382 (451)
                      .|+.  .+|+++.+++++++++.
T Consensus       201 ~g~~--g~g~~~~~~~~~~~~~~  221 (416)
T 3isl_A          201 SVPS--GMAPITYNERVADVIAA  221 (416)
T ss_dssp             CCCS--SEEEEEECHHHHHHHHT
T ss_pred             CCCC--CeEEEEECHHHHHHhhc
Confidence            6554  37899999999888763

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.88  E-value=6.1e-22  Score=198.31  Aligned_cols=218  Identities=15%  Similarity=0.156  Sum_probs=159.1

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all----~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+...++++++++++|.+  +.+++++|++|+.+++.++.    ++||+|+++++.|.++...+. .+...|+++.+++.
T Consensus        42 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~  120 (382)
T 4eb5_A           42 REAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIPV  120 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEECB
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEecc
Confidence            466788999999999974  56666788899999999988    899999999999988765553 34557888888874


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S~S  356 (451)
                           .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|++ |+|++++.+... ....+++|+++.|+|
T Consensus       121 ~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~s  198 (382)
T 4eb5_A          121 GKYGEVDVSFIDQKLRDD-TILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSN  198 (382)
T ss_dssp             CTTSCBCHHHHHHHCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETG
T ss_pred             CCCCccCHHHHHHHhcCC-CeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehH
Confidence                 4899999999874 99999999999999999999999999999999 999998743211 112347899999999


Q ss_pred             ccCCccccceeEEEEeCHHH-HHHHHH----HhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          357 KFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~el-i~~lr~----~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      |+++..|   .|+++++++. +..+..    .........+......+...++    .+..+.++..++++.+.+.|++.
T Consensus       199 K~~g~~g---~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  275 (382)
T 4eb5_A          199 DIYGPKG---VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI  275 (382)
T ss_dssp             GGTCCSS---CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HhcCCCc---eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            9876544   4666666542 111100    0111122334333332222333    24455677778899999999988


Q ss_pred             CCeEE
Q 013019          428 PKVLL  432 (451)
Q Consensus       428 p~V~~  432 (451)
                      |+++.
T Consensus       276 ~~~~~  280 (382)
T 4eb5_A          276 EESYL  280 (382)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            87753

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.88  E-value=2.9e-21  Score=195.48  Aligned_cols=222  Identities=16%  Similarity=0.139  Sum_probs=166.7

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccC----------CCeEEEcCCCCcchHHHHHHhhh
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA----------GGHIVTTTDCYRKTRIFIETVLP  271 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~----------GD~VIv~~~~Y~~t~~~l~~~l~  271 (451)
                      +.+.++.++...+|+++|++++|.++++++++|++|+..++..+..+          ||+|++..+.|.+..........
T Consensus        70 ~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~  149 (392)
T 3ruy_A           70 LTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSS  149 (392)
T ss_dssp             CCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCS
T ss_pred             ccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccC
Confidence            34445678899999999999999888999999999999999877655          67999999999764433222111


Q ss_pred             c---------CCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC
Q 013019          272 K---------MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP  338 (451)
Q Consensus       272 ~---------~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~  338 (451)
                      .         ....+..++..|+++|++++++ ++++|++++|+||||.+.+    +++|.++|++||+++|+|+++...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~  228 (392)
T 3ruy_A          150 NEEYKRGFGPMLPGIIVIPYGDLEALKAAITP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGL  228 (392)
T ss_dssp             CTTTTTTCCSCCSSEEEECTTCHHHHHHHCCT-TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred             ChhhccccCCCCCCCeeeCcccHHHHHHHhcc-CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCC
Confidence            1         1123555666799999999986 4999999999999999998    999999999999999999998532


Q ss_pred             ------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHH
Q 013019          339 ------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRV  410 (451)
Q Consensus       339 ------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl  410 (451)
                            ..........|+++  +||.++| |..++|++++++++++.++..........++..+..+...++.+.  ...
T Consensus       229 ~~~g~~~~~~~~~~~~d~~~--~SK~l~g-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  305 (392)
T 3ruy_A          229 GRTGKVFACDWDNVTPDMYI--LGKALGG-GVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKLT  305 (392)
T ss_dssp             TTTSSSSGGGGGTCCCSEEE--ECGGGGT-TTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred             CccccchhhhccCCCCCEEE--EchhhhC-ChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhHH
Confidence                  11122233467774  5699887 324689999999888777655444445567777777666666553  345


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 013019          411 QQQNSTALRMAEILEAH  427 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~~  427 (451)
                      ++..++++.+.+.|++.
T Consensus       306 ~~~~~~~~~l~~~L~~~  322 (392)
T 3ruy_A          306 ERSLQLGEKLVGQLKEI  322 (392)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            66777888888888876

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.88  E-value=1.3e-21  Score=195.77  Aligned_cols=217  Identities=17%  Similarity=0.117  Sum_probs=162.1

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc----cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all----~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+...+|++++++++|.+  +.+++++|++|+..++.++.    ++||+|+++++.|.+....+. .+...|.++..++.
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~  121 (384)
T 1eg5_A           43 NLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVPV  121 (384)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECCB
T ss_pred             HHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEcc
Confidence            455688999999999964  67777888899999999987    799999999999988665543 34556888888764


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcC--CEEEEecCCCCCCc-cccccCCCcEEEEC
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPLN-QKALSLGADLVLHS  354 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g--~~lVVD~tfa~~~~-~~pl~~GaDiVv~S  354 (451)
                           .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|  +++|+|++++.+.. .....++.|+++.|
T Consensus       122 ~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s  200 (384)
T 1eg5_A          122 DSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFS  200 (384)
T ss_dssp             CTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEE
T ss_pred             CCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEec
Confidence                 479999999987 4999999999999999999999999999999  99999999763211 11123478999999


Q ss_pred             CcccCCccccceeEEEEeCHHH--HHHHHHH---hHhhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHH
Q 013019          355 ATKFIGGHNDVLAGSISGSGKL--VTQIRNL---HHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~el--i~~lr~~---~~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~Lae~L~  425 (451)
                      +||+++.+|   .|++++++++  ...+...   ........+......+...++.    +....++..++++.+.+.|+
T Consensus       201 ~sK~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~  277 (384)
T 1eg5_A          201 AHKFHGPKG---VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLM  277 (384)
T ss_dssp             GGGGTSCTT---CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCc---eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence            999987665   5898888765  2111110   0112224455544444444433    34556677788899999998


Q ss_pred             cCCCeE
Q 013019          426 AHPKVL  431 (451)
Q Consensus       426 ~~p~V~  431 (451)
                      + ++++
T Consensus       278 ~-~g~~  282 (384)
T 1eg5_A          278 N-LGAH  282 (384)
T ss_dssp             T-TTCE
T ss_pred             C-CCeE
Confidence            7 5664

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.88  E-value=7.5e-21  Score=194.07  Aligned_cols=210  Identities=14%  Similarity=0.193  Sum_probs=156.2

Q ss_pred             HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...|++++++++    |.    + +.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.++..++.
T Consensus        64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~----~~~~g~~~~~v~~  139 (411)
T 2o0r_A           64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPV----VAMAGAHRVTVPL  139 (411)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHH----HHHcCCEEEEeec
Confidence            456777777664    52    3 566667777999999999999999999999999986643    3456777666543


Q ss_pred             --------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-------cccc
Q 013019          283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL  344 (451)
Q Consensus       283 --------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-------~~pl  344 (451)
                              .|+++|++++++ ++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+....       ...+
T Consensus       140 ~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  218 (411)
T 2o0r_A          140 VPDGRGFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF  218 (411)
T ss_dssp             EEETTEEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred             cccccCCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhc
Confidence                    589999999986 4999999999999999976   58999999999999999999875321       1111


Q ss_pred             --cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH----HHHHHHHHHHHHHH
Q 013019          345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTAL  418 (451)
Q Consensus       345 --~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~----tl~~Rl~~~~~nA~  418 (451)
                        ..+.|+++.|++|.++.+| .++|+++++++++++++......+...++.....+...|+    .+....++..++.+
T Consensus       219 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  297 (411)
T 2o0r_A          219 DGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRD  297 (411)
T ss_dssp             TTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence              1367999999999998666 5789999999999988876654433333333333333332    34445566667788


Q ss_pred             HHHHHHHcC
Q 013019          419 RMAEILEAH  427 (451)
Q Consensus       419 ~Lae~L~~~  427 (451)
                      .+.+.|+++
T Consensus       298 ~l~~~L~~~  306 (411)
T 2o0r_A          298 RLAAGLTEI  306 (411)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            888888775

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.88  E-value=2.8e-21  Score=190.79  Aligned_cols=211  Identities=15%  Similarity=0.187  Sum_probs=159.4

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC-cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAE-STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae-~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+++...+|+++|++++|.+ +.+++++|+ +++..++.++  +||+|++++|.|.+...    .++..|+++..++
T Consensus        45 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~----~~~~~g~~~~~v~  118 (337)
T 3p1t_A           45 INRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRA----RIAVSGLRHFEIG  118 (337)
T ss_dssp             TTSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHH----HHTTSCCEEEEEC
T ss_pred             hccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH----HHHHcCCEEEEec
Confidence            55677889999999999999974 355555555 7888888776  89999999999998653    4556788888876


Q ss_pred             C-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc--cc-cCCCcEEEE
Q 013019          282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--AL-SLGADLVLH  353 (451)
Q Consensus       282 ~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~--pl-~~GaDiVv~  353 (451)
                      .     .|+++|+++  . ++++|++++|+||||.+.++++|.++|+++++ +|+|++|.......  .. ..+.++++.
T Consensus       119 ~~~~~~~d~~~l~~~--~-~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~  194 (337)
T 3p1t_A          119 LTDDLLLDPNDLAQV--S-RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFR  194 (337)
T ss_dssp             BCTTSSBCHHHHTTC--C-TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEE
T ss_pred             CCCCCCCCHHHHHhh--c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEe
Confidence            3     378888876  2 37999999999999999999999999999996 66699987432211  11 225679999


Q ss_pred             CCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG---MKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       354 S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg---L~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      |+||.++.+| .++|+++++++++++++.....+  ..+......+...   .+.+..++++..++.+.+.+.|+++
T Consensus       195 S~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  268 (337)
T 3p1t_A          195 SFSKSYGLAG-LRLGALFGPSELIAAMKRKQWFC--NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL  268 (337)
T ss_dssp             ESSSTTCCTT-TCCEEEECCHHHHHHHHTTSCTT--CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eCchhccCcc-hheEEEEeCHHHHHHHHhhcCCC--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999997555 46899999999999887654433  3344443333333   3445666777778888999999887

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.88  E-value=4.8e-21  Score=193.02  Aligned_cols=216  Identities=9%  Similarity=0.014  Sum_probs=158.5

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      +....+++++++++|.+  ..+++++|++|+..++.+++++||+|+++++.|.+..  +...+...|.++..++.     
T Consensus        42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  119 (392)
T 2z9v_A           42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEA  119 (392)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCC
Confidence            34678999999999973  5666678889999999999999999999999998753  22344556777776653     


Q ss_pred             CCHHHHHHhhcC-CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEEEECCcccCC
Q 013019          283 ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATKFIG  360 (451)
Q Consensus       283 ~D~d~Le~ai~~-~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S~SK~l~  360 (451)
                      .|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... ....+++|+++.|+||+++
T Consensus       120 ~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~  199 (392)
T 2z9v_A          120 IDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLG  199 (392)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTC
T ss_pred             CCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCccccc
Confidence            489999999942 24899999999999999999999999999999999999998754221 2223578999999999776


Q ss_pred             ccccceeEEEEeCHHHHHHHHHHh--------------------HhhCCCccHHHHHHHHHhhHH-----HHHHHHHHHH
Q 013019          361 GHNDVLAGSISGSGKLVTQIRNLH--------------------HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNS  415 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr~~~--------------------~~~G~~ls~~~a~l~lrgL~t-----l~~Rl~~~~~  415 (451)
                      |+.  ..|+++++++++++++...                    .......+......+...++.     +....++..+
T Consensus       200 ~~~--g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  277 (392)
T 2z9v_A          200 APP--GLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHAL  277 (392)
T ss_dssp             CCS--CCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCC--ceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            543  1489999999888876421                    011122333332222223332     3445667778


Q ss_pred             HHHHHHHHHHcCCCe
Q 013019          416 TALRMAEILEAHPKV  430 (451)
Q Consensus       416 nA~~Lae~L~~~p~V  430 (451)
                      +++.+.+.|++. ++
T Consensus       278 ~~~~l~~~L~~~-g~  291 (392)
T 2z9v_A          278 TAKAMRAGVTAM-GL  291 (392)
T ss_dssp             HHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHc-CC
Confidence            888888888876 44

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.88  E-value=2.1e-20  Score=192.03  Aligned_cols=212  Identities=18%  Similarity=0.233  Sum_probs=169.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC-----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~-----  283 (451)
                      .+...+|+++|++++|.++++++++|++|+..++.++. +||+|+++++.|.++...    +...|.++.+++..     
T Consensus        51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~----~~~~G~~~~~v~~~~~~~~  125 (424)
T 2po3_A           51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHA----LRWIGLTPVFADIDPDTGN  125 (424)
T ss_dssp             CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTSS
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCcCC
Confidence            37889999999999999989999999999999999875 789999999999987643    44568888887642     


Q ss_pred             -CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc--cccccCCCcEEEECCc--cc
Q 013019          284 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSAT--KF  358 (451)
Q Consensus       284 -D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~--~~pl~~GaDiVv~S~S--K~  358 (451)
                       |+++|++++++ ++++|+++   ||+|.+.++++|.++|+++|+++|+|++++.+..  ..++....|+++.|++  |.
T Consensus       126 ~d~~~l~~~i~~-~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~  201 (424)
T 2po3_A          126 LDPDQVAAAVTP-RTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKA  201 (424)
T ss_dssp             BCHHHHGGGCCT-TEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred             cCHHHHHHhhCc-CCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCC
Confidence             79999999987 49999984   5899999999999999999999999999885332  2233323689999998  88


Q ss_pred             CCccccceeEEEEeC-HHHHHHHHHHhHhh----------C--CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013019          359 IGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~----------G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~  425 (451)
                      +++.   ++|+++++ ++++++++......          |  ..+++..+.+.+..++.+....++..++++.+.+.|+
T Consensus       202 l~~~---~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~  278 (424)
T 2po3_A          202 VNAF---EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLA  278 (424)
T ss_dssp             SCCS---SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCC---CCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8773   58999998 78888887654321          1  1345677777777777777777888888889999998


Q ss_pred             cCCCeEE
Q 013019          426 AHPKVLL  432 (451)
Q Consensus       426 ~~p~V~~  432 (451)
                      +.|++..
T Consensus       279 ~~~g~~~  285 (424)
T 2po3_A          279 DLPGVLV  285 (424)
T ss_dssp             SCTTEEE
T ss_pred             cCCCccc
Confidence            8887654

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.88  E-value=1e-20  Score=193.90  Aligned_cols=210  Identities=16%  Similarity=0.189  Sum_probs=157.6

Q ss_pred             HHHHHHHHHhhh----CC----C-cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e-~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      ...|++++++++    |.    + +.+++++|++|+.+++.+++++||+|+++.+.|.+....+    ...|.++..++ 
T Consensus        79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~  154 (429)
T 1yiz_A           79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPL  154 (429)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeC
Confidence            456777777664    52    4 5666666679999999999999999999999999866443    44577766553 


Q ss_pred             --------------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCc----
Q 013019          282 --------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN----  340 (451)
Q Consensus       282 --------------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~----  340 (451)
                                    ..|+++|++++++ ++++|++++|+||||.+.   ++++|.++|+++|+++|+|++|.....    
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~  233 (429)
T 1yiz_A          155 KPNKTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE  233 (429)
T ss_dssp             BCCCSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSC
T ss_pred             CcccccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC
Confidence                          2479999999976 499999999999999998   499999999999999999999874321    


Q ss_pred             ---cccc--cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH----------
Q 013019          341 ---QKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----------  405 (451)
Q Consensus       341 ---~~pl--~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t----------  405 (451)
                         ...+  ..+.|+++.|+||.++++| .+.|++++++++++.++..........++..+..+...|+.          
T Consensus       234 ~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  312 (429)
T 1yiz_A          234 HIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPEC  312 (429)
T ss_dssp             CCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTS
T ss_pred             CcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHH
Confidence               1112  2467999999999998666 56899999999999888766544444555554444444443          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHcC
Q 013019          406 -LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       406 -l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                       +....++..++.+.+.+.|+++
T Consensus       313 ~~~~~~~~~~~~~~~l~~~L~~~  335 (429)
T 1yiz_A          313 YFNSISGELMAKRDYMASFLAEV  335 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence             3444555667788888888876

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.88  E-value=4.1e-21  Score=193.85  Aligned_cols=210  Identities=19%  Similarity=0.230  Sum_probs=170.5

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      .++...+|+++|++++|.++++++++|++|+..++.++ +++||+|+++.+.|.++...    +...|+++.+++.    
T Consensus        37 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~  112 (393)
T 1mdo_A           37 TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM----IVLLGANPVMVDVDRDT  112 (393)
T ss_dssp             SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTT
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHH----HHHCCCEEEEEeccCCc
Confidence            45888999999999999998999999999999999999 89999999999999987643    4457888887763    


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCC-CcEEEECCc--c
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHSAT--K  357 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~G-aDiVv~S~S--K  357 (451)
                        .|+++|++++++ ++++|+++   ||+|.+.|+++|.++|+++|+++|+|++++.+.......+| .|+++.|++  |
T Consensus       113 ~~~d~~~l~~~l~~-~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K  188 (393)
T 1mdo_A          113 LMVTPEHIEAAITP-QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK  188 (393)
T ss_dssp             CCBCHHHHHHHCCT-TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred             CCCCHHHHHHhcCC-CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCC
Confidence              479999999987 49999874   58999999999999999999999999999865322222345 899999999  9


Q ss_pred             cCCccccceeEEEEeC-HHHHHHHHHHhHhh----------------------C--CCccHHHHHHHHHhhHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------------------G--GALNPNAAYLIIRGMKTLHLRVQQ  412 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~----------------------G--~~ls~~~a~l~lrgL~tl~~Rl~~  412 (451)
                      ++++.   ++|+++++ ++++++++......                      |  ..+++..+.+.+..++.+....++
T Consensus       189 ~l~~~---~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~  265 (393)
T 1mdo_A          189 NITCA---EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR  265 (393)
T ss_dssp             SSCSS---SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccccc---cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99764   48999886 78888887654311                      1  124667777666777777777888


Q ss_pred             HHHHHHHHHHHHHcCC
Q 013019          413 QNSTALRMAEILEAHP  428 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~p  428 (451)
                      ..++++.+.+.|++.+
T Consensus       266 ~~~~~~~l~~~L~~~~  281 (393)
T 1mdo_A          266 RAAIAAQYHQAMADLP  281 (393)
T ss_dssp             HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            8889999999999887

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.88  E-value=1.1e-21  Score=197.00  Aligned_cols=208  Identities=13%  Similarity=0.085  Sum_probs=155.0

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccC--CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~--GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ..+|++.+++++    |.    ++.+++++|++|+..++.+++++  ||+|+++.+.|.+....    +...|.++..++
T Consensus        61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~  136 (376)
T 3ezs_A           61 EESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGA----AKFIKAKSLLMP  136 (376)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHH----HHHcCCEEEEcc
Confidence            345666666654    63    56777888889999999999999  99999999999986543    455688887776


Q ss_pred             CCCHH----HHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc------
Q 013019          282 PADME----GLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL------  344 (451)
Q Consensus       282 ~~D~d----~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl------  344 (451)
                      ..+.+    +|++++.+ ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......    ..+      
T Consensus       137 ~~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  215 (376)
T 3ezs_A          137 LTKENDFTPSLNEKELQ-EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLA  215 (376)
T ss_dssp             CCGGGTSCCCCCHHHHH-HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHT
T ss_pred             cCCCCCcchhHHhhhcc-CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccc
Confidence            43211    56666665 4899999999999999987   677888899999999999998753221    111      


Q ss_pred             ---cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHH
Q 013019          345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTAL  418 (451)
Q Consensus       345 ---~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~  418 (451)
                         ..+.++++.|+||.++.+| .+.|+++++++++++++......+...++..+..+...++   .+..+.++..++.+
T Consensus       216 ~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  294 (376)
T 3ezs_A          216 GNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLK  294 (376)
T ss_dssp             TCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             cccccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence               3567899999999997665 5689999999999999887766566667776665554443   34455566667777


Q ss_pred             HHHHHHH
Q 013019          419 RMAEILE  425 (451)
Q Consensus       419 ~Lae~L~  425 (451)
                      .+.+.|+
T Consensus       295 ~l~~~l~  301 (376)
T 3ezs_A          295 LARKIFK  301 (376)
T ss_dssp             HHHHHST
T ss_pred             HHHHHhc
Confidence            7777775

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.88  E-value=2e-20  Score=189.15  Aligned_cols=213  Identities=16%  Similarity=0.100  Sum_probs=156.8

Q ss_pred             HHH-HHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVV-VEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~-Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ... |++.|++++    |    .++.+++++|++|+..++.+++++||+|+++.+.|.+....+    ...|.++..++.
T Consensus        65 ~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~  140 (390)
T 1d2f_A           65 KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVAL  140 (390)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEC
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHH----HHCCCEEEEeec
Confidence            344 666666654    4    256777777789999999999999999999999999866443    455777666542


Q ss_pred             --------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----ccccC
Q 013019          283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALSL  346 (451)
Q Consensus       283 --------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~pl~~  346 (451)
                              .|+++|++++++.++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.....     ....+
T Consensus       141 ~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  220 (390)
T 1d2f_A          141 EKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV  220 (390)
T ss_dssp             EECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT
T ss_pred             ccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHc
Confidence                    58999999997645999999999999999987   899999999999999999998754211     11122


Q ss_pred             C--C-cEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhH-hhC-CCccHHHHHHHHHhhH----HHHHHHHHHHHH
Q 013019          347 G--A-DLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH-VLG-GALNPNAAYLIIRGMK----TLHLRVQQQNST  416 (451)
Q Consensus       347 G--a-DiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~-~~G-~~ls~~~a~l~lrgL~----tl~~Rl~~~~~n  416 (451)
                      .  . |. +.|+||.++.+| +++|+++++ ++++++++.... ... ...++..++.+...++    .+....++..++
T Consensus       221 ~~~~~d~-~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  298 (390)
T 1d2f_A          221 ARGDWAL-LTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN  298 (390)
T ss_dssp             CCSSEEE-EECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             chhhHhh-ccCccHhhcccC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2  2 77 999999998655 567888874 788888877655 333 2456665554444443    344455667778


Q ss_pred             HHHHHHHHHc-CCCe
Q 013019          417 ALRMAEILEA-HPKV  430 (451)
Q Consensus       417 A~~Lae~L~~-~p~V  430 (451)
                      .+.+.+.|++ .|++
T Consensus       299 ~~~l~~~L~~~~~~~  313 (390)
T 1d2f_A          299 LTYIADKMNAAFPEL  313 (390)
T ss_dssp             HHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHhhCCCC
Confidence            8888999988 6765

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.88  E-value=1.5e-20  Score=192.46  Aligned_cols=210  Identities=13%  Similarity=0.165  Sum_probs=167.8

Q ss_pred             HHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC------C
Q 013019          212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------D  284 (451)
Q Consensus       212 ~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~------D  284 (451)
                      .+++++++++++|.++.+++++|++|+..++.++ +++||+|+++.+.|.++...    +...|.++.+++..      |
T Consensus        44 ~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~d  119 (418)
T 2c81_A           44 ERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATA----VLNVNALPVFVDVEADTYCID  119 (418)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTCSBC
T ss_pred             HHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHH----HHHcCCEEEEEecCCCCCCcC
Confidence            8899999999999988999999999999999999 89999999999999987644    34568888877642      7


Q ss_pred             HHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc--cccccCCCcEEEECC--cccCC
Q 013019          285 MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSA--TKFIG  360 (451)
Q Consensus       285 ~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~--~~pl~~GaDiVv~S~--SK~l~  360 (451)
                      +++|++++++ ++++|++   +||+|.+.|+++|.++|+++|++||+|++++.+..  ..++....|+++.|+  +|+++
T Consensus       120 ~~~l~~~i~~-~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~~  195 (418)
T 2c81_A          120 PQLIKSAITD-KTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVLT  195 (418)
T ss_dssp             HHHHGGGCCT-TEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC
T ss_pred             HHHHHHhhCC-CCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCcccC
Confidence            9999999987 4999986   56899999999999999999999999999887641  222222247888888  99998


Q ss_pred             ccccceeEEEEe-CHHHHHHHHHHhHhh--------------C------------CCccHHHHHHHHHhhHHHHHHHHHH
Q 013019          361 GHNDVLAGSISG-SGKLVTQIRNLHHVL--------------G------------GALNPNAAYLIIRGMKTLHLRVQQQ  413 (451)
Q Consensus       361 G~gdv~gG~Iv~-~~eli~~lr~~~~~~--------------G------------~~ls~~~a~l~lrgL~tl~~Rl~~~  413 (451)
                      + +  ++|++++ +++++++++..+...              .            ..+.+..+.+.+..++.+..+.++.
T Consensus       196 ~-g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~  272 (418)
T 2c81_A          196 A-G--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIR  272 (418)
T ss_dssp             S-S--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred             C-C--CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            8 5  5899998 478888877644220              0            0134556666666777777788888


Q ss_pred             HHHHHHHHHHHHcCCCeEE
Q 013019          414 NSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       414 ~~nA~~Lae~L~~~p~V~~  432 (451)
                      .++++.+.+.|++.|+++.
T Consensus       273 ~~~~~~l~~~L~~~~g~~~  291 (418)
T 2c81_A          273 EKNAMFLNDALSKIDGIKV  291 (418)
T ss_dssp             HHHHHHHHHHHTTSTTEEE
T ss_pred             HHHHHHHHHHhccCCCccc
Confidence            8899999999998888754

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.87  E-value=4.1e-21  Score=193.25  Aligned_cols=219  Identities=14%  Similarity=0.134  Sum_probs=163.4

Q ss_pred             CCCchhHHHHHHHHHhh------hCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEE
Q 013019          206 RYGNPTTVVVEEKMSAL------EGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  277 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l------~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v  277 (451)
                      +|+++...+|+++++++      .+.  +..+++++|++++..++.+++++||+|+++++.|.+...    .+...|.++
T Consensus        65 ~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~----~~~~~g~~~  140 (369)
T 3cq5_A           65 RYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPI----LAKGTHTEF  140 (369)
T ss_dssp             SCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHH----HHHHTTCEE
T ss_pred             cCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHH----HHHHcCCEE
Confidence            34444446888888888      343  344444455589999999999999999999999988654    344567777


Q ss_pred             EEeC-----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccc----cCC
Q 013019          278 TVID-----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL----SLG  347 (451)
Q Consensus       278 ~~vd-----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl----~~G  347 (451)
                      ..++     ..|+++|++++++.++++|++++|+||||.+.++++|.++++.+++++|+|++|+.+.. ...+    ..+
T Consensus       141 ~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  220 (369)
T 3cq5_A          141 IAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYP  220 (369)
T ss_dssp             EEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCT
T ss_pred             EEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCC
Confidence            7664     24789999999762389999999999999999999999999999999999999865432 1112    235


Q ss_pred             -CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH
Q 013019          348 -ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       348 -aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~  423 (451)
                       .++++.|+||+++.+| .++|+++++++++++++.....++  .++..++.+...++   .+..+.++..++++.+.+.
T Consensus       221 ~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  297 (369)
T 3cq5_A          221 TKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVMLVRLPYH--LSALSQAAAIVALRHSADTLGTVEKLSVERVRVAAR  297 (369)
T ss_dssp             TTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHHTTSCTTC--SCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHHHcCCCCC--CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence             6799999999998665 568999999999888876554443  55666555544444   4555667777888889998


Q ss_pred             HHcCCCeEE
Q 013019          424 LEAHPKVLL  432 (451)
Q Consensus       424 L~~~p~V~~  432 (451)
                      |++. ++..
T Consensus       298 L~~~-g~~~  305 (369)
T 3cq5_A          298 LEEL-GYAV  305 (369)
T ss_dssp             HHHH-TCEE
T ss_pred             HHhC-CCEE
Confidence            9873 4543

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.87  E-value=2.5e-20  Score=191.68  Aligned_cols=217  Identities=11%  Similarity=0.108  Sum_probs=157.5

Q ss_pred             hHHHHHHHHHhhhCCC----------cEEEeC-CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          211 TTVVVEEKMSALEGAE----------STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       211 t~~~Lee~LA~l~gae----------~~vv~s-SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      .++++.+.+++.+|.+          +.++++ +|++|+..++.+++++||+|++++|.|.+...    .+...|.++..
T Consensus        83 lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~  158 (425)
T 2r2n_A           83 LLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ----SLHPLGCNIIN  158 (425)
T ss_dssp             HHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH----HHGGGTCEEEE
T ss_pred             HHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH----HHHHcCCEEEE
Confidence            3555666666656642          355554 55699999999999999999999999998654    34556887777


Q ss_pred             eCC----CCHHHHHHhhcC-----------CCeEEEEE-eCCCCCccccccHH---HHHHHHHhcCCEEEEecCCCCCCc
Q 013019          280 IDP----ADMEGLEAALNN-----------NNVSLFFT-ESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN  340 (451)
Q Consensus       280 vd~----~D~d~Le~ai~~-----------~~tklV~l-esPsNPtG~v~DL~---~IaelA~~~g~~lVVD~tfa~~~~  340 (451)
                      ++.    .|+++|++++++           .++++|++ ++|+||||.+.+.+   +|.++|+++|++||+|++|+....
T Consensus       159 v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~  238 (425)
T 2r2n_A          159 VASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQF  238 (425)
T ss_dssp             ECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBS
T ss_pred             eCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccC
Confidence            653    478999998862           24888876 68999999999754   999999999999999999863211


Q ss_pred             -------ccccc-CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH-------
Q 013019          341 -------QKALS-LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------  405 (451)
Q Consensus       341 -------~~pl~-~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t-------  405 (451)
                             ...++ .+.++++.|+||+++ +| ++.|+++++++++++++..+.....+.++..++.+...|+.       
T Consensus       239 ~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~  316 (425)
T 2r2n_A          239 NKFRVPTFLSMDVDGRVIRADSFSKIIS-SG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFM  316 (425)
T ss_dssp             SSSCCCCTGGGCTTSCEEEEEESTTTTC-ST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCccccCCCCCEEEEccchhhcc-Cc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHH
Confidence                   11111 245699999999997 55 67899999999999988877665556677766655555543       


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHc-CCCeEEE
Q 013019          406 --LHLRVQQQNSTALRMAEILEA-HPKVLLL  433 (451)
Q Consensus       406 --l~~Rl~~~~~nA~~Lae~L~~-~p~V~~V  433 (451)
                        +....++..++.+.+.+.|++ .|++..+
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~  347 (425)
T 2r2n_A          317 AHVDRVIDFYSNQKDAILAAADKWLTGLAEW  347 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence              233345556777888888887 4665443

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.87  E-value=1.9e-20  Score=189.93  Aligned_cols=211  Identities=18%  Similarity=0.123  Sum_probs=162.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d  286 (451)
                      .+...+|+++|++++|.++.+++++|+.++..++..+.  .+||+|+++.+.|+++...    +...|.++..++..|++
T Consensus        90 ~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~d~~  165 (401)
T 2bwn_A           90 TAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEG----IKRNAGPKRIFRHNDVA  165 (401)
T ss_dssp             BHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHH----HHHSCCCEEEECTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHH----HHHcCCeEEEEcCCCHH
Confidence            46788999999999999899999999998777776654  4899999999999887643    34568888888888899


Q ss_pred             HHHHhhcC---CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc-------ccc--CCCcEEEEC
Q 013019          287 GLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-------ALS--LGADLVLHS  354 (451)
Q Consensus       287 ~Le~ai~~---~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~-------pl~--~GaDiVv~S  354 (451)
                      +|+++++.   .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+....       ...  .+.|+++.|
T Consensus       166 ~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s  245 (401)
T 2bwn_A          166 HLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGT  245 (401)
T ss_dssp             HHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEE
T ss_pred             HHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEee
Confidence            99988861   248999999999999999999999999999999999999987432210       011  135899999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~lrgL~tl-----~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++|.++++    ||++++++++++.++.....  +....++..+..+...++.+     ....++..++++.+.+.|++.
T Consensus       246 ~sK~~~~~----GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (401)
T 2bwn_A          246 LAKAYGVF----GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL  321 (401)
T ss_dssp             SSSTTCSC----CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhccCC----CCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC
Confidence            99999976    48999999988887754322  22233444444444444433     445667778888888888875

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.87  E-value=7.2e-21  Score=190.32  Aligned_cols=213  Identities=19%  Similarity=0.218  Sum_probs=168.6

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH---ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al---l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      +.+...+|+++|++++|.++++++++|++|+..++.++   +++||+|+++.+.|.++...+    ...|+++.+++.  
T Consensus        30 ~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~  105 (375)
T 2fnu_A           30 QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANML----LESGYTPVFAGIKN  105 (375)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHH----HHTTCEEEECCBCT
T ss_pred             CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHH----HHCCCEEEEeccCC
Confidence            36788899999999999988888999999999999999   899999999999999876543    346888888764  


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCC--CcEEEECCc-
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT-  356 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~G--aDiVv~S~S-  356 (451)
                         .|+++|++++++ ++++|++++|   +|.+.|+++|.++|+++|+++|+|++++.+........+  .|+++.|++ 
T Consensus       106 ~~~~d~~~l~~~i~~-~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~  181 (375)
T 2fnu_A          106 DGNIDELALEKLINE-RTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHA  181 (375)
T ss_dssp             TSSBCGGGSGGGCCT-TEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred             CCCCCHHHHHhhcCc-CceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCC
Confidence               378899999987 4999888665   999999999999999999999999998765322211122  378888888 


Q ss_pred             -ccCCccccceeEEEEeC-HHHHHHHHHHhHhh--------------C--CCccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013019          357 -KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTAL  418 (451)
Q Consensus       357 -K~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~--------------G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~  418 (451)
                       |++++ |  .||+++.+ ++++++++......              +  ..+.+..+.+.+..++.+..++++..++++
T Consensus       182 ~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  258 (375)
T 2fnu_A          182 IKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAAL  258 (375)
T ss_dssp             TSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             99976 5  46666654 77888887654211              1  145677666666667777888888899999


Q ss_pred             HHHHHHHcCCCeE
Q 013019          419 RMAEILEAHPKVL  431 (451)
Q Consensus       419 ~Lae~L~~~p~V~  431 (451)
                      .+.+.|++.|+++
T Consensus       259 ~l~~~L~~~~~~~  271 (375)
T 2fnu_A          259 TYDRIFKDNPYFT  271 (375)
T ss_dssp             HHHHHHTTCSSEE
T ss_pred             HHHHHhhcCCCcc
Confidence            9999999988764

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.87  E-value=3.3e-21  Score=195.18  Aligned_cols=170  Identities=14%  Similarity=0.136  Sum_probs=138.0

Q ss_pred             hhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC---
Q 013019          210 PTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~---  283 (451)
                      +...++++++++++|.+  . .++++||++|+..++.+++++||+|+++++.|.+..  +...+...|+++..++..   
T Consensus        46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~  123 (411)
T 3nnk_A           46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGE  123 (411)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCC
Confidence            44678999999999873  2 345567899999999999999999999999997632  224556678888877643   


Q ss_pred             --CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcccCC
Q 013019          284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       284 --D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l~  360 (451)
                        |+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......|+|+++.|++|+++
T Consensus       124 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~  203 (411)
T 3nnk_A          124 VFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLG  203 (411)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTC
T ss_pred             CCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccC
Confidence              899999999753489999999999999999999999999999999999999765422 22334579999999999866


Q ss_pred             ccccceeEEEEeCHHHHHHHHHH
Q 013019          361 GHNDVLAGSISGSGKLVTQIRNL  383 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr~~  383 (451)
                      ++.  .+|+++.+++++++++..
T Consensus       204 ~~~--g~g~~~~~~~~~~~~~~~  224 (411)
T 3nnk_A          204 GPS--GTSPITLSARMEEAIRRR  224 (411)
T ss_dssp             CCS--SEEEEEECHHHHHHHHTT
T ss_pred             CCC--ceEEEEECHHHHHHHhhc
Confidence            554  379999999998888754

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.8e-21  Score=197.09  Aligned_cols=210  Identities=14%  Similarity=0.165  Sum_probs=156.7

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--  281 (451)
                      ...|++.+++++    |.    ++.+++++|++|+..++.+++++||+|++++|.|.+....+    ...|.++..++  
T Consensus        97 ~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~  172 (447)
T 3b46_A           97 RPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNI----ELCGGKVVYVPIN  172 (447)
T ss_dssp             CHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeCC
Confidence            456777777665    42    35666666679999999999999999999999999866443    44566655443  


Q ss_pred             ---------------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCc---
Q 013019          282 ---------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN---  340 (451)
Q Consensus       282 ---------------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~---  340 (451)
                                     ..|+++|++++++ ++++|++++|+||||.+.   ++++|+++|++||+++|+|++|.....   
T Consensus       173 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~  251 (447)
T 3b46_A          173 PPKELDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS  251 (447)
T ss_dssp             CCGGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred             CccccccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC
Confidence                           2478999999986 499999999999999986   589999999999999999999875321   


Q ss_pred             ---cccc---cCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH------HH
Q 013019          341 ---QKAL---SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LH  407 (451)
Q Consensus       341 ---~~pl---~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t------l~  407 (451)
                         ...+   ..+.++++.|+||+++.+| .+.|++++ ++++++.++........+.++...+.+...|+.      +.
T Consensus       252 ~~~~~~~~~~~~~~~i~i~S~sK~~~~~G-~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~  330 (447)
T 3b46_A          252 FTRIATLSPEIGQLTLTVGSAGKSFAATG-WRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYFE  330 (447)
T ss_dssp             CCCGGGSCHHHHTTEEEEEEHHHHTTCTT-SCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CcCHHHcCCCCCCcEEEEecCchhcCCcc-hhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHHH
Confidence               1111   2478999999999998666 46899999 999999888766544444555555444444443      33


Q ss_pred             HHHHHHHHHHHHHHHHHHcC
Q 013019          408 LRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ...++..++.+.+.+.|+++
T Consensus       331 ~~~~~~~~~~~~l~~~L~~~  350 (447)
T 3b46_A          331 KMRQEYINKFKIFTSIFDEL  350 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHC
Confidence            34556677788888888875

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.87  E-value=7.9e-21  Score=192.43  Aligned_cols=211  Identities=15%  Similarity=0.185  Sum_probs=166.7

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC---
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~---  283 (451)
                      .++...+|++.|++++|.+++++++||++|+..++.++ +++||+|+++.+.|.++...    +...|.++.+++..   
T Consensus        54 ~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~  129 (391)
T 3dr4_A           54 VGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANS----VTYCGATPVLVDNDPRT  129 (391)
T ss_dssp             CSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTT
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHH----HHHCCCEEEEEecCccc
Confidence            46889999999999999999999999999999999999 99999999999999987643    34568888887643   


Q ss_pred             ---CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCC--CcEEEECCc--
Q 013019          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--  356 (451)
Q Consensus       284 ---D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~G--aDiVv~S~S--  356 (451)
                         |+++|+++++++ +++|+   |+||||.+.|+++|.++|+++|+++|+|++++.+........+  .|+++.|++  
T Consensus       130 ~~~d~~~l~~~~~~~-~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~  205 (391)
T 3dr4_A          130 FNLDAAKLEALITPR-TKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGN  205 (391)
T ss_dssp             CSBCGGGSGGGCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTT
T ss_pred             cCcCHHHHHHhcCCC-ceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCCC
Confidence               789999999874 89888   5789999999999999999999999999998865432222222  489999866  


Q ss_pred             ccCCccccceeEEEEeC-HHHHHHHHHHhHhh--------------CCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~--------------G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~La  421 (451)
                      |++++ +  .+|+++.+ +++.++++......              ...+.+..+.+.+..++.+....++..++++.+.
T Consensus       206 K~l~~-g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~  282 (391)
T 3dr4_A          206 AIITT-G--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYE  282 (391)
T ss_dssp             SSSCC-B--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CcCCc-C--CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987 3  37887765 45777776554211              1245666666666666667777788888899999


Q ss_pred             HHHHcCCCe
Q 013019          422 EILEAHPKV  430 (451)
Q Consensus       422 e~L~~~p~V  430 (451)
                      +.|++. ++
T Consensus       283 ~~L~~~-g~  290 (391)
T 3dr4_A          283 QKLARL-GN  290 (391)
T ss_dssp             HHHGGG-TT
T ss_pred             HHhhcC-Cc
Confidence            999887 44

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.87  E-value=1.2e-21  Score=196.16  Aligned_cols=215  Identities=12%  Similarity=0.070  Sum_probs=158.1

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccC-------------CCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~~-------------GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      ...+++++++++++|.+  +.+++++|++|+..++.+++.+             ||+|+++++.|.++...+    ...|
T Consensus        69 ~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g  144 (397)
T 3f9t_A           69 LLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGR----EMMD  144 (397)
T ss_dssp             HHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHH----HHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHH----HHcC
Confidence            44567899999999873  4577888899999999998876             999999999999866443    4458


Q ss_pred             cEEEEeCCC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc---cc----
Q 013019          275 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QK----  342 (451)
Q Consensus       275 i~v~~vd~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~---~~----  342 (451)
                      +++..++..     |+++|++++++.++++|++++|+||+|.+.|+++|.++|++||+++|+|++|+.+..   ..    
T Consensus       145 ~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~  224 (397)
T 3f9t_A          145 LEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKK  224 (397)
T ss_dssp             CEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCC
T ss_pred             ceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccccccc
Confidence            888888754     899999999872389999999999999999999999999999999999999864211   10    


Q ss_pred             -----cccC--CCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhh---------CCC--ccHHHHHHHHHh-
Q 013019          343 -----ALSL--GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL---------GGA--LNPNAAYLIIRG-  402 (451)
Q Consensus       343 -----pl~~--GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~---------G~~--ls~~~a~l~lrg-  402 (451)
                           +...  ++|+++.|++|+++++.  .+|+++. ++.+.+.++.....+         |..  .+....+.+++. 
T Consensus       225 ~~~~~~~~~~~~~~~~~~s~~K~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  302 (397)
T 3f9t_A          225 KGVNYKFDFSLGVDSITIDPHKMGHCPI--PSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYL  302 (397)
T ss_dssp             TTCCCCCSGGGTCSEEECCTTTTTCCCS--SCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCeEEEccccccCCCC--CceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHH
Confidence                 2222  78999999999996654  3455555 555554443222221         111  133444444433 


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          403 -MKTLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       403 -L~tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                       ...+..++++..++++.+.+.|+++ ++.
T Consensus       303 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~  331 (397)
T 3f9t_A          303 GREGQRKIVNECMENTLYLYKKLKEN-NFK  331 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHC-CCE
Confidence             3445667778888999999999987 543

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.87  E-value=6.4e-21  Score=194.69  Aligned_cols=209  Identities=14%  Similarity=0.186  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC
Q 013019          212 TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (451)
Q Consensus       212 ~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~  283 (451)
                      ...|+++++++++        .++.+++++|++|+..++.+++++||+|+++++.|.+....    +...|.++..++..
T Consensus        81 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~  156 (409)
T 2gb3_A           81 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAF----AKIAGVKLIPVTRR  156 (409)
T ss_dssp             CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHHTCEEEEEECC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEeccC
Confidence            5678888887763        15677777888999999999999999999999999986643    34457777776543


Q ss_pred             -----C-HHHHHHhhcCCCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCc----ccccc--CCC
Q 013019          284 -----D-MEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LGA  348 (451)
Q Consensus       284 -----D-~d~Le~ai~~~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~----~~pl~--~Ga  348 (451)
                           + +++|++++++ ++++|++++|+||||.+.   ++++|.++|+++|+++|+|++|+....    ...+.  .+.
T Consensus       157 ~~~~~~~~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~  235 (409)
T 2gb3_A          157 MEEGFAIPQNLESFINE-RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDK  235 (409)
T ss_dssp             GGGTSCCCTTGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTT
T ss_pred             CCCCCccHHHHHHhhCc-CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCC
Confidence                 2 6788888876 499999999999999986   589999999999999999999875422    11122  357


Q ss_pred             cEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA~~Lae~  423 (451)
                      |+++.|++|+++.+| .++|++++++ +++++++....... ..++...+.+...|    +.+....++..++.+.+.+.
T Consensus       236 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  313 (409)
T 2gb3_A          236 VVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKK  313 (409)
T ss_dssp             EEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecchhccCCcc-ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999997665 5689999988 89998887766554 55666555544444    23444456677788888888


Q ss_pred             HHcC
Q 013019          424 LEAH  427 (451)
Q Consensus       424 L~~~  427 (451)
                      |+++
T Consensus       314 L~~~  317 (409)
T 2gb3_A          314 LEEH  317 (409)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9876

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.87  E-value=6e-21  Score=192.39  Aligned_cols=220  Identities=15%  Similarity=0.151  Sum_probs=160.9

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae---~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      |+.+..+...++++++++++|.+   ..+++++|++|+..++.+++++||+|+++++.|.+..  +...++..|.++..+
T Consensus        46 ~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v  123 (393)
T 2huf_A           46 LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVV  123 (393)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEE
Confidence            33334466788999999999974   2445577889999999999999999999999998742  223445678888777


Q ss_pred             CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEEC
Q 013019          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS  354 (451)
Q Consensus       281 d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S  354 (451)
                      +.     .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .....+++|+++.|
T Consensus       124 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s  203 (393)
T 2huf_A          124 KSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTG  203 (393)
T ss_dssp             ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred             eCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEEC
Confidence            63     5899999999762389999999999999999999999999999999999999764321 11223578999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHh----H-h---------hC---------CCccHHHHHHHHHhhHH-----H
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH----H-V---------LG---------GALNPNAAYLIIRGMKT-----L  406 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~----~-~---------~G---------~~ls~~~a~l~lrgL~t-----l  406 (451)
                      ++|+++|+..  .|+++++++++++++...    . .         ++         ...+......+...++.     +
T Consensus       204 ~sK~l~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  281 (393)
T 2huf_A          204 SQKVLGAPPG--ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGL  281 (393)
T ss_dssp             SSSTTCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             CCcccccCCC--eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCH
Confidence            9998765431  388999999988877531    1 1         11         12333332222223322     4


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 013019          407 HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ....++..++++.+.+.|++.
T Consensus       282 ~~~~~~~~~~~~~l~~~L~~~  302 (393)
T 2huf_A          282 PALIARHEDCAKRLYRGLQDA  302 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            445677778889999999876

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.87  E-value=8.1e-21  Score=194.97  Aligned_cols=216  Identities=12%  Similarity=0.074  Sum_probs=163.8

Q ss_pred             CCCch-hHHHHHHHHHhhh-----CC--Cc---EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhc-C
Q 013019          206 RYGNP-TTVVVEEKMSALE-----GA--ES---TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK-M  273 (451)
Q Consensus       206 R~~np-t~~~Lee~LA~l~-----ga--e~---~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~-~  273 (451)
                      +|+.+ ....|++.|++++     +.  ++   .+++++|++|+..++.+++++||+|++++|.|.+...    .+.. .
T Consensus        83 ~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~  158 (430)
T 2x5f_A           83 PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL----VFNTRN  158 (430)
T ss_dssp             SCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH----HHTTTT
T ss_pred             ccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH----HHHHhc
Confidence            34444 3678999999988     64  45   5666666799999999999999999999999998653    3445 6


Q ss_pred             CcEEEEeCC------CCHHHHHHhhcCC--CeEEEEEeCCCCCcccccc---HHHHHHHHHh-----cCCEEEEecCCCC
Q 013019          274 GITATVIDP------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDGTFAT  337 (451)
Q Consensus       274 Gi~v~~vd~------~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~D---L~~IaelA~~-----~g~~lVVD~tfa~  337 (451)
                      |.++..++.      .|+++|++++++.  ++++|++++|+||||.+.+   +++|.++|++     +|+++|+|++|..
T Consensus       159 g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~  238 (430)
T 2x5f_A          159 GANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG  238 (430)
T ss_dssp             CCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT
T ss_pred             CCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc
Confidence            888777653      3689999998751  4899999999999999998   8899999999     9999999999875


Q ss_pred             CCcc----cc----c-c-CCC---cEEEECCcccCCccccceeEEEEe---CHHHHHHHHHHhHh----hCCCccHHHHH
Q 013019          338 PLNQ----KA----L-S-LGA---DLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHV----LGGALNPNAAY  397 (451)
Q Consensus       338 ~~~~----~p----l-~-~Ga---DiVv~S~SK~l~G~gdv~gG~Iv~---~~eli~~lr~~~~~----~G~~ls~~~a~  397 (451)
                      ....    .+    + . .+.   ++++.|+||.++.+| .+.|++++   +++++++++.....    .....++..++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  317 (430)
T 2x5f_A          239 LFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWG-FRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQS  317 (430)
T ss_dssp             CBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGG-GCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred             ccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCC-CCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHH
Confidence            3211    12    1 1 345   688999999998666 46789999   99999988876554    34456677666


Q ss_pred             HHHHhhH----HHHH---HHHHHHHHHHHHHHHHHc
Q 013019          398 LIIRGMK----TLHL---RVQQQNSTALRMAEILEA  426 (451)
Q Consensus       398 l~lrgL~----tl~~---Rl~~~~~nA~~Lae~L~~  426 (451)
                      .+...|+    .+..   ..++..++.+.+.+.|++
T Consensus       318 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  353 (430)
T 2x5f_A          318 AVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYA  353 (430)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6655555    2333   556677788888888883

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.87  E-value=1.1e-20  Score=192.55  Aligned_cols=215  Identities=12%  Similarity=0.092  Sum_probs=157.3

Q ss_pred             hHHHHHHHHHhhhC--------------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          211 TTVVVEEKMSALEG--------------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       211 t~~~Lee~LA~l~g--------------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      ...+|+++++++++              .++.+++++|++|+..++.+++++||+|+++++.|.+....    +...|++
T Consensus        76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~~  151 (416)
T 1bw0_A           76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETV----CKAYGIG  151 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCE
T ss_pred             CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHH----HHHcCcE
Confidence            45678888888877              35667777777999999999999999999999999986543    4456777


Q ss_pred             EEEeCC-------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-cc---
Q 013019          277 ATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-QK---  342 (451)
Q Consensus       277 v~~vd~-------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-~~---  342 (451)
                      +..++.       .|+++|+++++++ +++|++++|+||||.+.+   +++|.++|+++|++||+|++|..... ..   
T Consensus       152 ~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~  230 (416)
T 1bw0_A          152 MHFYNCRPENDWEADLDEIRRLKDDK-TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPN  230 (416)
T ss_dssp             EEEEEEEGGGTTEECHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTT
T ss_pred             EEEeecCcccCCCCCHHHHHHHhccC-CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Confidence            666542       3799999999874 899999999999999998   99999999999999999999875321 11   


Q ss_pred             ----cc-cC---CCcEEEECCcccCCccccceeEEEEeCH--HHHHHHH----HHhHhhCCCccHHHHHHHHHhhH----
Q 013019          343 ----AL-SL---GADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIR----NLHHVLGGALNPNAAYLIIRGMK----  404 (451)
Q Consensus       343 ----pl-~~---GaDiVv~S~SK~l~G~gdv~gG~Iv~~~--eli~~lr----~~~~~~G~~ls~~~a~l~lrgL~----  404 (451)
                          ++ .+   +.++++.|+||.++++| .++|++++++  ++++++.    ..... ....++..++.+...|+    
T Consensus       231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~  308 (416)
T 1bw0_A          231 ATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNTPQ  308 (416)
T ss_dssp             CCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSSCH
T ss_pred             CCccCHHHccCCCcEEEEecchhhCCCCC-ceEEEEEeeCchhhHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHhcccH
Confidence                11 11   23588899999998766 4678888755  3444333    22211 22345555554444443    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          405 -TLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       405 -tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                       .+....++..++.+.+.+.|+++|++..
T Consensus       309 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~  337 (416)
T 1bw0_A          309 EHLDQIVAKIEESAMYLYNHIGECIGLAP  337 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence             3555667778889999999998887753

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.87  E-value=1.3e-20  Score=196.03  Aligned_cols=216  Identities=15%  Similarity=0.123  Sum_probs=160.4

Q ss_pred             hHHHHHHHHHhhh----CC---CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          211 TTVVVEEKMSALE----GA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       211 t~~~Lee~LA~l~----ga---e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ....|+++|++++    |.   ++.+++++|++|+..++.+++++||+|+++.|.|.+....+    ...|.++..++. 
T Consensus       119 g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~  194 (448)
T 3aow_A          119 GFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAF----NFYEPQYIQIPLD  194 (448)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHH----HHcCCEEEEeccC
Confidence            3567888888877    75   45666667779999999999999999999999999866443    446777666643 


Q ss_pred             ---CCHHHHHHhhc----C-CCeEEEE-EeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-c----ccc
Q 013019          283 ---ADMEGLEAALN----N-NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-K----ALS  345 (451)
Q Consensus       283 ---~D~d~Le~ai~----~-~~tklV~-lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-~----pl~  345 (451)
                         .|+++|+++++    + .++++|+ +++|+||||.+.+   +++|.++|+++|++||+|++|...... .    ...
T Consensus       195 ~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~  274 (448)
T 3aow_A          195 DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKA  274 (448)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGG
T ss_pred             CCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHh
Confidence               47999999987    5 2589985 6899999999986   578999999999999999998754221 1    112


Q ss_pred             ---CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH------HHHHHHHHHHH
Q 013019          346 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNST  416 (451)
Q Consensus       346 ---~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~n  416 (451)
                         .+.++++.|+||.++ +| .++|+++++++++++++..........++..++.+...|+.      +....++..++
T Consensus       275 ~~~~~~vi~~~S~SK~~~-~G-lriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~  352 (448)
T 3aow_A          275 LDNEGRVIYLGTFSKILA-PG-FRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPR  352 (448)
T ss_dssp             GCTTSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEccchhhcc-cc-ccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               256799999999998 55 67899999999999988766544334466655554444432      34445556677


Q ss_pred             HHHHHHHHHc-CC-CeEE
Q 013019          417 ALRMAEILEA-HP-KVLL  432 (451)
Q Consensus       417 A~~Lae~L~~-~p-~V~~  432 (451)
                      .+.+.+.|++ .| ++..
T Consensus       353 ~~~l~~~L~~~~~~g~~~  370 (448)
T 3aow_A          353 RDAMLEALEEFMPEGVKW  370 (448)
T ss_dssp             HHHHHHHHHHHCCTTCEE
T ss_pred             HHHHHHHHHHhCCCCeEE
Confidence            8888888987 46 4643

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.87  E-value=3.1e-21  Score=195.83  Aligned_cols=216  Identities=14%  Similarity=0.133  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----CC
Q 013019          211 TTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----AD  284 (451)
Q Consensus       211 t~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----~D  284 (451)
                      ...+|+++|++++|.  ++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++.    .|
T Consensus        75 ~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~d  150 (397)
T 2zyj_A           75 GYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQA----FRLQGPRFLTVPAGEEGPD  150 (397)
T ss_dssp             CCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTCCEEEEEEEETTEEC
T ss_pred             CCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEEecCcCCCCCC
Confidence            467899999999985  4455555666899999999999999999999999986643    3456777666543    37


Q ss_pred             HHHHHHhhcCCCeEEE-EEeCCCCCccccccH---HHHHHHHHhcCCEEEEecCCCCCCc-----cccccC------CCc
Q 013019          285 MEGLEAALNNNNVSLF-FTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL------GAD  349 (451)
Q Consensus       285 ~d~Le~ai~~~~tklV-~lesPsNPtG~v~DL---~~IaelA~~~g~~lVVD~tfa~~~~-----~~pl~~------GaD  349 (451)
                      +++|++++++.++++| ++++|+||||.+.+.   ++|.++|+++|+++|+|++|+....     .....+      +.+
T Consensus       151 ~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~  230 (397)
T 2zyj_A          151 LDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGV  230 (397)
T ss_dssp             HHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCE
T ss_pred             HHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeE
Confidence            9999999975348888 479999999999875   5899999999999999999876432     111122      334


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~-----tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      +++.|+||+++ +| .+.|+++++++++++++.....+....++..+..+...|+     .+....++..++.+.+.+.|
T Consensus       231 i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  308 (397)
T 2zyj_A          231 IYLGSFSKVLS-PG-LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHAL  308 (397)
T ss_dssp             EEEEESTTTTC-GG-GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccccc-cc-ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999998 54 5789999999999988876554433345665555544443     34444566677888888989


Q ss_pred             Hc-CC-CeEE
Q 013019          425 EA-HP-KVLL  432 (451)
Q Consensus       425 ~~-~p-~V~~  432 (451)
                      ++ .| ++..
T Consensus       309 ~~~~~~g~~~  318 (397)
T 2zyj_A          309 DREVPKEVRY  318 (397)
T ss_dssp             HHHSCTTSEE
T ss_pred             HHHCCCCeEE
Confidence            87 46 4543

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.87  E-value=1.4e-20  Score=193.20  Aligned_cols=218  Identities=14%  Similarity=0.188  Sum_probs=159.5

Q ss_pred             ccCCCchh-HHHHHHHHHhhhC--------C--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhc
Q 013019          204 YGRYGNPT-TVVVEEKMSALEG--------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK  272 (451)
Q Consensus       204 Y~R~~npt-~~~Lee~LA~l~g--------a--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~  272 (451)
                      ..+|+++. ..+|++.++++++        .  +..+++++|++++..++.+++++||+|+++++.|.+....   ....
T Consensus        76 ~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~---~~~~  152 (428)
T 1iay_A           76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRD---LRWR  152 (428)
T ss_dssp             HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH---TTTT
T ss_pred             hcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHH---HHHh
Confidence            35566665 6789999999875        2  4455555555999999999999999999999999985432   2345


Q ss_pred             CCcEEEEeCC-------CCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCC
Q 013019          273 MGITATVIDP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT  337 (451)
Q Consensus       273 ~Gi~v~~vd~-------~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~  337 (451)
                      .|+++..++.       .|+++|++++++     .++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|..
T Consensus       153 ~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~  232 (428)
T 1iay_A          153 TGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAA  232 (428)
T ss_dssp             TCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGG
T ss_pred             cCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccc
Confidence            6888877753       278999998863     24899999999999999999   99999999999999999999875


Q ss_pred             CCcc-------ccccCC-------Cc--EEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHH
Q 013019          338 PLNQ-------KALSLG-------AD--LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLII  400 (451)
Q Consensus       338 ~~~~-------~pl~~G-------aD--iVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~l  400 (451)
                      ....       ..+..+       .|  +++.|+||.++.+| ++.|++++ +++++++++.....+  ..++..+..+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~  309 (428)
T 1iay_A          233 TVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSFG--LVSTQTQYFLA  309 (428)
T ss_dssp             GCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred             cccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHHHHhcc--cCCHHHHHHHH
Confidence            2211       111112       57  89999999998666 56788888 688888887655433  23455544444


Q ss_pred             HhhHH-------HHHHHHHHHHHHHHHHHHHHcC
Q 013019          401 RGMKT-------LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       401 rgL~t-------l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ..++.       +....++..++.+.+.+.|+++
T Consensus       310 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (428)
T 1iay_A          310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            43332       3344556677888888899876

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.86  E-value=9.8e-21  Score=194.50  Aligned_cols=211  Identities=14%  Similarity=0.156  Sum_probs=157.5

Q ss_pred             hHHHHHHHHHhhh----C---C--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          211 TTVVVEEKMSALE----G---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       211 t~~~Lee~LA~l~----g---a--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ....|++.|++++    |   .  ++.+++++|++|+..++.+++++||+|+++.+.|.+....    +...|.++..++
T Consensus        86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~  161 (425)
T 1vp4_A           86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINA----FRQYLANFVVVP  161 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEEEec
Confidence            4567888888877    7   3  3455555566999999999999999999999999986643    344677776654


Q ss_pred             C----CCHHHHHHhhcC-------CCeEEEE-EeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-c---c
Q 013019          282 P----ADMEGLEAALNN-------NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-Q---K  342 (451)
Q Consensus       282 ~----~D~d~Le~ai~~-------~~tklV~-lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-~---~  342 (451)
                      .    .|+++|++++++       .++++|+ +++|+||||.+.+   +++|.++|+++|+++|+|++|+.... .   .
T Consensus       162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~  241 (425)
T 1vp4_A          162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD  241 (425)
T ss_dssp             EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred             cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCc
Confidence            3    479999998865       2489984 7899999999986   67899999999999999999875422 1   1


Q ss_pred             cc----cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH------HHHHHHH
Q 013019          343 AL----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQ  412 (451)
Q Consensus       343 pl----~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t------l~~Rl~~  412 (451)
                      ++    ..+.++++.|+||+++ +| .++|+++++++++++++..........++..++.+...|+.      +....++
T Consensus       242 ~~~~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  319 (425)
T 1vp4_A          242 PIFKIGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIEL  319 (425)
T ss_dssp             CHHHHHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHH
T ss_pred             CHHHhCCCCCEEEEeccccccc-cc-cceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            11    1256799999999998 55 57899999999999888766554444566666665555543      3334555


Q ss_pred             HHHHHHHHHHHHHcC
Q 013019          413 QNSTALRMAEILEAH  427 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~  427 (451)
                      ..++.+.+.+.|+++
T Consensus       320 ~~~~~~~l~~~L~~~  334 (425)
T 1vp4_A          320 YRRKRTVMLNALEEY  334 (425)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            667788888888874

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.86  E-value=4.1e-21  Score=191.38  Aligned_cols=216  Identities=11%  Similarity=0.122  Sum_probs=164.0

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      +.+|+++...+|+++|++++|.  ++.+++++|++|+..++.++.  ||+|+++.+.|.+...    .+...|.++..++
T Consensus        44 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~----~~~~~g~~~~~v~  117 (350)
T 3fkd_A           44 IRHYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYED----ACRMYEHEVCFYP  117 (350)
T ss_dssp             GGSCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHH----HHHHTTCEEEEEE
T ss_pred             HhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHH----HHHHcCCeEEEEe
Confidence            4566676668999999999986  456666777799999998887  9999999999988663    3456788888887


Q ss_pred             C-CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcC-CEEEEecCCCCCCccc-----cc-cCCCcEEEE
Q 013019          282 P-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQK-----AL-SLGADLVLH  353 (451)
Q Consensus       282 ~-~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g-~~lVVD~tfa~~~~~~-----pl-~~GaDiVv~  353 (451)
                      . .+.+.+    ...++++|++++|+||||.+.++++|.++++.++ .++|+|++|.......     .. ..+.++++.
T Consensus       118 ~~~~~~~~----~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~  193 (350)
T 3fkd_A          118 SNEDIGEA----DFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVY  193 (350)
T ss_dssp             TTSCGGGS----CCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEE
T ss_pred             cCCccccC----ccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEe
Confidence            6 432332    2235899999999999999999999999998876 7999999987532211     11 234569999


Q ss_pred             CCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       354 S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      |+||.++.+| .++|+++++++++++++.....+  .+++..++.+...|+.   +..+++++.++++.+.+.|+++|++
T Consensus       194 S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  270 (350)
T 3fkd_A          194 SFSHAYGIPG-LRIGYIVANKDFMKRVAAFSTPW--AVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGV  270 (350)
T ss_dssp             ESHHHHSCGG-GCCEEEECCHHHHHHHHTTCCTT--CSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTE
T ss_pred             cCchhccCcc-hheEeEEeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999998665 56899999999999888765443  4566666666655554   2345666668899999999999887


Q ss_pred             EE
Q 013019          431 LL  432 (451)
Q Consensus       431 ~~  432 (451)
                      ..
T Consensus       271 ~~  272 (350)
T 3fkd_A          271 EV  272 (350)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.86  E-value=1.1e-20  Score=187.02  Aligned_cols=213  Identities=10%  Similarity=0.038  Sum_probs=155.5

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      +...++++++++++|.+  +.+++++|++|+..++.+++++||+|+++++.|.+..  +...+...|.++..++.     
T Consensus        34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~  111 (352)
T 1iug_A           34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT  111 (352)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCC
Confidence            34678999999999975  5666678889999999999999999999999998865  22345567888877754     


Q ss_pred             CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCCc-cccccCCCcEEEECCcccC
Q 013019          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 ~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l  359 (451)
                      .|+++|++   + ++++|++++|+||||.+.|+++|.++|+++  |+++|+|++++.+.. .....+++|+++.|+||++
T Consensus       112 ~d~~~l~~---~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  187 (352)
T 1iug_A          112 PRPEDVAK---E-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGL  187 (352)
T ss_dssp             CCTTTSCC---S-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTT
T ss_pred             CCHHHHhc---c-CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccc
Confidence            35666655   3 489999999999999999999999999999  999999999864321 1112347899999999977


Q ss_pred             CccccceeEEEEeCHHHHHH---------HHHHh-----HhhCCCccHHHHHHHHHhhHH----HHHHHHHHHHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQ---------IRNLH-----HVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMA  421 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~---------lr~~~-----~~~G~~ls~~~a~l~lrgL~t----l~~Rl~~~~~nA~~La  421 (451)
                      .++.  ..|+++++++++++         ++...     .......+......+...++.    +....++..++++.+.
T Consensus       188 ~~~~--g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~  265 (352)
T 1iug_A          188 MCPP--GLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLY  265 (352)
T ss_dssp             CCCS--CEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCC--ceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6653  25888889887755         33111     111223444433333333332    4456677778899999


Q ss_pred             HHHHcCCCeE
Q 013019          422 EILEAHPKVL  431 (451)
Q Consensus       422 e~L~~~p~V~  431 (451)
                      +.|++. ++.
T Consensus       266 ~~L~~~-g~~  274 (352)
T 1iug_A          266 GVGEEG-GLR  274 (352)
T ss_dssp             HHHHHT-TCE
T ss_pred             HHHHHC-CCc
Confidence            999887 553

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.86  E-value=8.6e-21  Score=190.39  Aligned_cols=215  Identities=13%  Similarity=0.149  Sum_probs=160.4

Q ss_pred             chhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          209 NPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae---~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .+...++++++++++|.+   ..+++++|++|+..++.+++++||+|+++.+.|.+..  +...+...|.++..++.   
T Consensus        55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~  132 (393)
T 3kgw_A           55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPG  132 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCC
Confidence            355678999999999863   2456678889999999999999999999987775321  22445667888777652   


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccC
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l  359 (451)
                        .|+++|++++++.++++|++++|+||||.+.++++|.++|+++|+++|+|++++.+. .......++|+++.|+||++
T Consensus       133 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~  212 (393)
T 3kgw_A          133 EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVL  212 (393)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTT
T ss_pred             CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccc
Confidence              489999999986348999999999999999999999999999999999999987432 22223457899999999988


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHhH--------------hh---------CCCccHHHHHHHHHhhHH-----HHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLHH--------------VL---------GGALNPNAAYLIIRGMKT-----LHLRVQ  411 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~~--------------~~---------G~~ls~~~a~l~lrgL~t-----l~~Rl~  411 (451)
                      +|+.  ..|+++++++++++++....              .+         ....+......+...++.     +....+
T Consensus       213 ~~~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  290 (393)
T 3kgw_A          213 NAPP--GISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWR  290 (393)
T ss_dssp             CCCS--SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cCCC--ceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            6553  27899999999888764321              11         123344433333333332     455567


Q ss_pred             HHHHHHHHHHHHHHcC
Q 013019          412 QQNSTALRMAEILEAH  427 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~~  427 (451)
                      +..++++.+.+.|+++
T Consensus       291 ~~~~~~~~l~~~L~~~  306 (393)
T 3kgw_A          291 RHREATAHLHKHLQEM  306 (393)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            7788899999999887

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.86  E-value=1.2e-20  Score=191.63  Aligned_cols=214  Identities=17%  Similarity=0.227  Sum_probs=158.7

Q ss_pred             hHHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          211 TTVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       211 t~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...+|++++++++    |    .++.+++++|++|+..++.+++++||+|+++.++|.+....    +...|.++..++.
T Consensus        76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~  151 (407)
T 2zc0_A           76 GIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLA----FEQLGAKIEGVPV  151 (407)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEccc
Confidence            4577888888887    7    24555666667999999999999999999999999886543    3456777766643


Q ss_pred             ----CCHHHHHHhhc----C-CCeEEE-EEeCCCCCccccccHH---HHHHHHHhcCCEEEEecCCCCCCc-cc----cc
Q 013019          283 ----ADMEGLEAALN----N-NNVSLF-FTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-QK----AL  344 (451)
Q Consensus       283 ----~D~d~Le~ai~----~-~~tklV-~lesPsNPtG~v~DL~---~IaelA~~~g~~lVVD~tfa~~~~-~~----pl  344 (451)
                          .|+++|+++++    + .++++| ++++|+||||.+.+++   +|.++|+++|+++|+|++|+.... ..    ..
T Consensus       152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  231 (407)
T 2zc0_A          152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLK  231 (407)
T ss_dssp             ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred             CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChh
Confidence                47999999987    5 248987 4789999999999876   999999999999999999875422 11    11


Q ss_pred             cC---CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH-------HHHHHHHHH
Q 013019          345 SL---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQQN  414 (451)
Q Consensus       345 ~~---GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t-------l~~Rl~~~~  414 (451)
                      .+   +.++++.|+||+++ +| .++|+++++++++++++......+...++.....+...++.       +....++..
T Consensus       232 ~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  309 (407)
T 2zc0_A          232 ALDNEGRVIVAGTLSKVLG-TG-FRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYK  309 (407)
T ss_dssp             GGCSSCCEEEEEESTTTTC-TT-SCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHH
T ss_pred             hcCCCCCEEEEcccccccC-CC-cceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            22   45689999999998 54 56899999999999888776655444566655544444432       223345566


Q ss_pred             HHHHHHHHHHHc-CCCe
Q 013019          415 STALRMAEILEA-HPKV  430 (451)
Q Consensus       415 ~nA~~Lae~L~~-~p~V  430 (451)
                      ++.+.+.+.|++ .|++
T Consensus       310 ~~~~~l~~~L~~~~~~~  326 (407)
T 2zc0_A          310 EKRDIMLKALENHLPNA  326 (407)
T ss_dssp             HHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            778888888876 3554

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.86  E-value=1.2e-20  Score=191.39  Aligned_cols=219  Identities=14%  Similarity=0.148  Sum_probs=164.7

Q ss_pred             cccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchHHHHHHh-----
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV-----  269 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~~~l~~~-----  269 (451)
                      .+.++.++...+|+++|++++|.++++++++|++|+..++.+++.       +| |+|++.++.|.+........     
T Consensus        74 ~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~  153 (406)
T 4adb_A           74 TGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPA  153 (406)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGG
T ss_pred             ccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCcc
Confidence            345677889999999999999999899999999999999988865       66 99999999998864322211     


Q ss_pred             ----hhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc-----cHHHHHHHHHhcCCEEEEecCCCCC-C
Q 013019          270 ----LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATP-L  339 (451)
Q Consensus       270 ----l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~-----DL~~IaelA~~~g~~lVVD~tfa~~-~  339 (451)
                          +...+..+..++..|+++|++++++ ++++|+++ |+||+|.+.     ++++|.++|++||++||+|++++.. .
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~  231 (406)
T 4adb_A          154 YSQDFAPLPADIRHAAYNDINSASALIDD-STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGR  231 (406)
T ss_dssp             GTGGGCSCCSSEEEECTTCHHHHHTTCST-TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred             ccccCCCCCCCceEeCCCcHHHHHHHhcC-CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence                1112245666777899999999986 49999998 999999765     6899999999999999999998632 1


Q ss_pred             -----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHH--HHHHHH
Q 013019          340 -----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQQ  412 (451)
Q Consensus       340 -----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl--~~Rl~~  412 (451)
                           .........|++  ++||.++ +| .++|+++++++++++++..........++..+..+...++.+  ....++
T Consensus       232 ~g~~~~~~~~~~~~d~~--t~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  307 (406)
T 4adb_A          232 TGELYAYMHYGVTPDLL--TTAKALG-GG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNG  307 (406)
T ss_dssp             TSSSSHHHHHTCCCSEE--EECGGGG-TT-SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHH
T ss_pred             cchhHHHHhcCCCCCEE--Eechhhc-CC-CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence                 112233456777  5799998 44 578999999998887765544344456777777766666654  444566


Q ss_pred             HHHHHHHHHHHHHcC
Q 013019          413 QNSTALRMAEILEAH  427 (451)
Q Consensus       413 ~~~nA~~Lae~L~~~  427 (451)
                      ..++++.+.+.|++.
T Consensus       308 ~~~~~~~l~~~l~~~  322 (406)
T 4adb_A          308 VKQRHDWFVERLNTI  322 (406)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            667777777777653

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.86  E-value=7.4e-21  Score=191.94  Aligned_cols=220  Identities=17%  Similarity=0.166  Sum_probs=159.7

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae---~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      |+.+..+...+|+++|++++|.+   +.+++++|++|+..++.+++++||+|+++++.|.+..  ....+...|+++..+
T Consensus        45 ~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v  122 (396)
T 2ch1_A           45 FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTI  122 (396)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEe
Confidence            43333345788999999999974   3455567789999999999999999999999998853  113456678888777


Q ss_pred             CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEEC
Q 013019          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS  354 (451)
Q Consensus       281 d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S  354 (451)
                      +.     .|+++|++++++.++++|++++|+||||.+.++++|.++|+++|+++|+|++|+.+.. .....+|+|+++.|
T Consensus       123 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s  202 (396)
T 2ch1_A          123 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTG  202 (396)
T ss_dssp             ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECC
T ss_pred             cCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEc
Confidence            63     5899999999762389999999999999999999999999999999999999874321 11223578999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHh--------------HhhC---------CCccHHHHHHHHHhhHH-----H
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH--------------HVLG---------GALNPNAAYLIIRGMKT-----L  406 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~--------------~~~G---------~~ls~~~a~l~lrgL~t-----l  406 (451)
                      ++|+++++.  ..|+++.++++++.++...              ..++         .+.+......+...++.     +
T Consensus       203 ~~K~~~~~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~  280 (396)
T 2ch1_A          203 AQKVLGAPP--GITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGL  280 (396)
T ss_dssp             CC-CCCCCS--SCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred             CCccccCCC--CeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhH
Confidence            999887654  2489999998887765310              1111         22333333332233332     3


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 013019          407 HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ....++..++++.+.+.|+++
T Consensus       281 ~~~~~~~~~~~~~l~~~L~~~  301 (396)
T 2ch1_A          281 ENQIKRRIECAQILYEGLGKM  301 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            445667778888898888876

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.86  E-value=1.9e-20  Score=189.60  Aligned_cols=208  Identities=15%  Similarity=0.194  Sum_probs=151.0

Q ss_pred             HHHHHHHHhh----hC----CCcEEEeCCHHHHHHHHHHHHccCC-CeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC
Q 013019          213 VVVEEKMSAL----EG----AESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (451)
Q Consensus       213 ~~Lee~LA~l----~g----ae~~vv~sSG~aAi~~al~all~~G-D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~  283 (451)
                      ..|++.++++    +|    .++.+++++|++|+..++.+++++| |+|++++|.|.+....    +...|.++..++..
T Consensus        79 ~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~  154 (398)
T 3ele_A           79 VETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVF----VNAAGARLVEVPAD  154 (398)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHH----HHHTTCEEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHH----HHHcCCEEEEEecC
Confidence            4555555554    34    2567777778899999999999999 9999999999986643    44568888877643


Q ss_pred             ------CHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHh------cCCEEEEecCCCCCCccc---c--
Q 013019          284 ------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLNQK---A--  343 (451)
Q Consensus       284 ------D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~------~g~~lVVD~tfa~~~~~~---p--  343 (451)
                            |+++|+++++++ +++|++++|+||||.+.+   +++|+++|++      +|+++|+|++|+......   +  
T Consensus       155 ~~~~~~d~~~l~~~l~~~-~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~  233 (398)
T 3ele_A          155 TEHFQIDFDALEERINAH-TRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV  233 (398)
T ss_dssp             TTTSSCCHHHHHHTCCTT-EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG
T ss_pred             CcCCcCCHHHHHHHhCcC-CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCCh
Confidence                  899999999874 999999999999999987   6777899998      999999999987532210   1  


Q ss_pred             -ccCCCcEEEECCcccCCccccceeEEEEeCHHH------HHHHHHHhHhhC-CCccHHHHHHHHHhhHHHHHHHHHHHH
Q 013019          344 -LSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------VTQIRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQNS  415 (451)
Q Consensus       344 -l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el------i~~lr~~~~~~G-~~ls~~~a~l~lrgL~tl~~Rl~~~~~  415 (451)
                       ...+.++++.|+||.++.+| .+.|++++++++      .+.+.......+ ...+...++.+...++... ..++..+
T Consensus       234 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~  311 (398)
T 3ele_A          234 TKYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAYKE  311 (398)
T ss_dssp             GGTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHHHH
T ss_pred             HhhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHHHH
Confidence             12356799999999998666 578999988763      333443333332 3445565555554444322 3456667


Q ss_pred             HHHHHHHHHHcC
Q 013019          416 TALRMAEILEAH  427 (451)
Q Consensus       416 nA~~Lae~L~~~  427 (451)
                      +.+.+.+.|++.
T Consensus       312 ~~~~l~~~L~~~  323 (398)
T 3ele_A          312 NRDLLYEGLTRI  323 (398)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            788888888765

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.86  E-value=1.9e-20  Score=185.75  Aligned_cols=213  Identities=11%  Similarity=0.078  Sum_probs=156.0

Q ss_pred             hhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          210 PTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      +..+++++++++++|.   ++.+++++|++|+..++.+++++ +.+++..+.|+.  . +...+...|+++.+++.    
T Consensus        43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~--~-~~~~~~~~g~~~~~v~~~~~~  118 (362)
T 3ffr_A           43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSK--R-FYEFAGELGREAYKEEAAFGK  118 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHH--H-HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHH--H-HHHHHHHhCCCeEEEecCCCC
Confidence            4567889999999986   34666778889999999999988 555555555541  1 22345667888887753    


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc-CCEEEEecCCCCCCccccccCCCcEEEECCcccCC
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~-g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~  360 (451)
                       .|+++|+  +++ ++++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+.....+.. +|+++.|+||+++
T Consensus       119 ~~d~~~l~--~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~  194 (362)
T 3ffr_A          119 GFYPADIT--VPA-DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFG  194 (362)
T ss_dssp             CCCGGGCC--CCT-TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTC
T ss_pred             CCCHHHHh--ccC-CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccC
Confidence             3778887  555 499999999999999999999999999999 999999999875532222222 8999999999999


Q ss_pred             ccccceeEEEEeCHHHHHHHHHHhHh---------------------hCCCccHHHHHHHHHhhHH-----HHHHHHHHH
Q 013019          361 GHNDVLAGSISGSGKLVTQIRNLHHV---------------------LGGALNPNAAYLIIRGMKT-----LHLRVQQQN  414 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr~~~~~---------------------~G~~ls~~~a~l~lrgL~t-----l~~Rl~~~~  414 (451)
                      ++.  .+|+++.+++++++++.....                     ...+.+....+.+...++.     +..++++..
T Consensus       195 ~~~--G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~  272 (362)
T 3ffr_A          195 LPA--GLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE  272 (362)
T ss_dssp             CCS--CCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             CCC--ceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            443  268888999988888765430                     0223334333333333332     456678888


Q ss_pred             HHHHHHHHHHHcCCCeEE
Q 013019          415 STALRMAEILEAHPKVLL  432 (451)
Q Consensus       415 ~nA~~Lae~L~~~p~V~~  432 (451)
                      ++++.+.+.|+++|+++.
T Consensus       273 ~~~~~l~~~L~~~~g~~~  290 (362)
T 3ffr_A          273 EKAALINTYIESSKVFSF  290 (362)
T ss_dssp             HHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHHHHHHHccCcee
Confidence            999999999999988754

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.86  E-value=8.3e-20  Score=181.05  Aligned_cols=219  Identities=17%  Similarity=0.168  Sum_probs=158.5

Q ss_pred             CchhHHHHHHHHHhhhCCCc-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcC--CcEEEEeCCC-
Q 013019          208 GNPTTVVVEEKMSALEGAES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM--GITATVIDPA-  283 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~--Gi~v~~vd~~-  283 (451)
                      ..+..+++++++++++|.+. .+++++|++|+..++.+++++||+|+++++.|+.++..  ..+...  |.++..++.. 
T Consensus        41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~  118 (356)
T 1v72_A           41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPA  118 (356)
T ss_dssp             CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGG
T ss_pred             cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCC
Confidence            36788999999999999655 57778999999999999999999999999988775532  003334  7788777653 


Q ss_pred             ---CHHHHHH-hhcCC------CeEEEEEeCCCCCcccc---ccHHHHHHHHHhcCCEEEEecCCCCC------Cccccc
Q 013019          284 ---DMEGLEA-ALNNN------NVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATP------LNQKAL  344 (451)
Q Consensus       284 ---D~d~Le~-ai~~~------~tklV~lesPsNPtG~v---~DL~~IaelA~~~g~~lVVD~tfa~~------~~~~pl  344 (451)
                         |+++|++ ++++.      ++++|++++|+| ||.+   .++++|.++|++||+++|+|++|..+      .....+
T Consensus       119 ~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~  197 (356)
T 1v72_A          119 AKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM  197 (356)
T ss_dssp             GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT
T ss_pred             CeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh
Confidence               7999999 88751      489999999987 9994   56889999999999999999997531      111111


Q ss_pred             --cCCCcEEEECCcccCCcccccee-EEEEeCHHHHHHHHHHhHhhCCCcc--HHHHHHHHHhhHH--HHHHHHHHHHHH
Q 013019          345 --SLGADLVLHSATKFIGGHNDVLA-GSISGSGKLVTQIRNLHHVLGGALN--PNAAYLIIRGMKT--LHLRVQQQNSTA  417 (451)
Q Consensus       345 --~~GaDiVv~S~SK~l~G~gdv~g-G~Iv~~~eli~~lr~~~~~~G~~ls--~~~a~l~lrgL~t--l~~Rl~~~~~nA  417 (451)
                        ..++|+++.|+||+ +++   .| |+++++++++++++..+...|....  ...+...++.++.  +...+++..+++
T Consensus       198 ~~~~~~d~~~~s~sK~-g~~---~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  273 (356)
T 1v72_A          198 TWKAGVDALSFGATKN-GVL---AAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAA  273 (356)
T ss_dssp             TGGGTCCEEEECCGGG-TCS---SCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred             hhhhcCCEEEEecccC-CCc---CccEEEEECHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence              23689999999999 433   34 6888899998888766544443222  2222222333321  223456677888


Q ss_pred             HHHHHHHHcCCCeEEE
Q 013019          418 LRMAEILEAHPKVLLL  433 (451)
Q Consensus       418 ~~Lae~L~~~p~V~~V  433 (451)
                      +.+.+.|++.++++.+
T Consensus       274 ~~l~~~L~~~~g~~~~  289 (356)
T 1v72_A          274 QRLAQGLEGLGGVEVL  289 (356)
T ss_dssp             HHHHHHHTTCTTEEEE
T ss_pred             HHHHHHHhhCCCcEEc
Confidence            9999999888887543

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.86  E-value=1.5e-20  Score=188.58  Aligned_cols=219  Identities=13%  Similarity=0.087  Sum_probs=161.2

Q ss_pred             CCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHH---Hc---cCC-CeEEEcCCCCcchHHHHHHhhh----cC
Q 013019          206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLA---LV---PAG-GHIVTTTDCYRKTRIFIETVLP----KM  273 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~aAi~~al~a---ll---~~G-D~VIv~~~~Y~~t~~~l~~~l~----~~  273 (451)
                      +|+++...+|+++|++++|. ++.+++++|++|+..++.+   +.   ++| |+|++.++.|.+..........    ..
T Consensus        66 ~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~  145 (375)
T 2eh6_A           66 LYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHK  145 (375)
T ss_dssp             TBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTT
T ss_pred             ccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccC
Confidence            45677788999999999998 7788888899999998865   35   678 9999999998875433222111    11


Q ss_pred             Cc-----EEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC-Cccc-
Q 013019          274 GI-----TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LNQK-  342 (451)
Q Consensus       274 Gi-----~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~-~~~~-  342 (451)
                      +.     .+..++..|+++|++++++ ++++|++++|+||||.+.+    +++|.++|+++|+++|+|++|+.. .... 
T Consensus       146 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~  224 (375)
T 2eh6_A          146 GFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF  224 (375)
T ss_dssp             TTCSCCSSEEEECTTCHHHHHTTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CCCCCCCCceeCCCchHHHHHHHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Confidence            22     2556666799999999986 4999999999999999988    999999999999999999998732 1111 


Q ss_pred             --cccCC--CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013019          343 --ALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL  418 (451)
Q Consensus       343 --pl~~G--aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~  418 (451)
                        ...+|  .|++  |+||++++ + .+.|+++++++++++++..........++..+..+...|+.+....++..++++
T Consensus       225 ~~~~~~~~~~d~~--s~SK~~~~-g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  300 (375)
T 2eh6_A          225 YAYQHFNLKPDVI--ALAKGLGG-G-VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGN  300 (375)
T ss_dssp             SGGGGGTCCCSEE--EECGGGGT-T-SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcCCCCCEE--EEcccccC-C-CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              12335  7877  56699985 3 467888888887776654211122234677666666667766555667778888


Q ss_pred             HHHHHHHcCCC
Q 013019          419 RMAEILEAHPK  429 (451)
Q Consensus       419 ~Lae~L~~~p~  429 (451)
                      .+.+.|++.+.
T Consensus       301 ~l~~~L~~~~~  311 (375)
T 2eh6_A          301 YFKEKLKELGK  311 (375)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHhc
Confidence            89999987653

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.86  E-value=9.7e-20  Score=192.49  Aligned_cols=218  Identities=12%  Similarity=0.129  Sum_probs=157.0

Q ss_pred             hhHHHHHHHHHhhhC-----CCcEEEeCCHHHHHHHHHHHHccCCC----eEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          210 PTTVVVEEKMSALEG-----AESTVIMASGMSASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       210 pt~~~Lee~LA~l~g-----ae~~vv~sSG~aAi~~al~all~~GD----~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +.++++.+.+.+..|     .++.++++++++++..++.+++++||    +|+++.|.|......    +...|.++..+
T Consensus       133 ~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~----~~~~g~~~v~~  208 (498)
T 3ihj_A          133 CIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAV----ISELDAIQVNY  208 (498)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHH----HHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEe
Confidence            345555555555553     25677777778999999999999875    999999999976543    34557776665


Q ss_pred             CC-------CCHHHHHHhhcCC----CeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----
Q 013019          281 DP-------ADMEGLEAALNNN----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----  342 (451)
Q Consensus       281 d~-------~D~d~Le~ai~~~----~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----  342 (451)
                      +.       .|+++|++++++.    ++++|++++|+||||.+++   +++|+++|+++|++||+|++|.......    
T Consensus       209 ~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~  288 (498)
T 3ihj_A          209 YLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRF  288 (498)
T ss_dssp             ECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCC
T ss_pred             eccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCc
Confidence            43       3899999999752    3899999999999999975   6779999999999999999987643321    


Q ss_pred             -cc-----cCC-------CcEEEECCcccCCccccceeEEEE---eCHHHHHHHHHHhHhhCCCccHHHHHHHHHh----
Q 013019          343 -AL-----SLG-------ADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----  402 (451)
Q Consensus       343 -pl-----~~G-------aDiVv~S~SK~l~G~gdv~gG~Iv---~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg----  402 (451)
                       ++     +++       ..++++|+||.+.|..+.++||++   .++++++.+...... ..+.+.....++...    
T Consensus       289 ~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~q~a~~~~l~~~  367 (498)
T 3ihj_A          289 HSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSV-RLCPPVSGQAAMDIVVNPP  367 (498)
T ss_dssp             CCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHH-SCCCCHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHhcCC
Confidence             11     011       137889999999542236789987   688999988877653 333444443333322    


Q ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          403 ----------MKTLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       403 ----------L~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                                ++.+..+.++..++++.+.+.|+++|++..
T Consensus       368 ~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~  407 (498)
T 3ihj_A          368 VAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHC  407 (498)
T ss_dssp             CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEe
Confidence                      233445567778899999999999888754

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.85  E-value=1.2e-19  Score=191.76  Aligned_cols=215  Identities=14%  Similarity=0.144  Sum_probs=156.7

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHc-cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all-~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      ...|++.+++++    |    .++.+++++|++|+..++.+++ ++||+|+++.|.|......    +...|.++..++ 
T Consensus       136 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~~  211 (500)
T 3tcm_A          136 IHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSAS----IALHGGALVPYYL  211 (500)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHH----HHHTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHH----HHHcCCEEEEEec
Confidence            445666666654    3    3667778888899999999998 7999999999999976643    345577766654 


Q ss_pred             ------CCCHHHHHHhhcCC-----CeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----c
Q 013019          282 ------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K  342 (451)
Q Consensus       282 ------~~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~  342 (451)
                            ..|+++|++++++.     ++++|++++|+||||.+++   +++|+++|+++|+++|+|++|......     .
T Consensus       212 ~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~  291 (500)
T 3tcm_A          212 NESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFH  291 (500)
T ss_dssp             BTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCC
Confidence                  45899999999751     4899999999999999976   667777899999999999998764321     1


Q ss_pred             cc-----cCC------CcEEEECCcccC-CccccceeEEEEe---CHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----
Q 013019          343 AL-----SLG------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----  403 (451)
Q Consensus       343 pl-----~~G------aDiVv~S~SK~l-~G~gdv~gG~Iv~---~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----  403 (451)
                      ++     .+|      ..++++|+||.+ +.+| .++|++++   +++++++++..... ..+.+.....++...+    
T Consensus       292 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~  369 (500)
T 3tcm_A          292 SFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQILASLVMNPPK  369 (500)
T ss_dssp             CHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHHHHHHHHSCCC
T ss_pred             cHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHhcCcc
Confidence            11     111      137788999999 4344 57899887   88899988876643 3344444444333222    


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          404 ----------KTLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       404 ----------~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                                +.+....++..++++.+.+.|++.|++..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~  408 (500)
T 3tcm_A          370 ASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITC  408 (500)
T ss_dssp             SSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence                      34555567778889999999999888754

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.85  E-value=7.5e-20  Score=185.39  Aligned_cols=213  Identities=16%  Similarity=0.180  Sum_probs=167.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-------ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-------l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ..+...+||++|++++|.+++++++||++|+..++.++       +++||+|+++.+.|.++...+    ...|.++.++
T Consensus        32 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~----~~~g~~~~~~  107 (390)
T 3b8x_A           32 MGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPL----QQYGLRVKFV  107 (390)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEE
Confidence            46889999999999999999999999999999999998       789999999999999876543    3568888887


Q ss_pred             CCC------CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCC--cEEE
Q 013019          281 DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVL  352 (451)
Q Consensus       281 d~~------D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~Ga--DiVv  352 (451)
                      +..      |+++|++++++ ++++|+++   |++|...|+++|.++|+++|+++|+|++++.+.......+|.  |+.+
T Consensus       108 ~~~~~~~~~d~~~l~~~i~~-~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~  183 (390)
T 3b8x_A          108 DIDINTLNIDIESLKEAVTD-STKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGT  183 (390)
T ss_dssp             CBCTTTCSBCHHHHHHHCCT-TEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEE
T ss_pred             ecCccccCcCHHHHHHHhCc-CCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEE
Confidence            643      89999999987 49999985   467778999999999999999999999998654434344566  4544


Q ss_pred             ECC--cccCCccccceeEEEEeCH-HHHHHHHHHhHh-----------------------------hCC--CccHHHHHH
Q 013019          353 HSA--TKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----------------------------LGG--ALNPNAAYL  398 (451)
Q Consensus       353 ~S~--SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~-----------------------------~G~--~ls~~~a~l  398 (451)
                      .|+  +|.++++   .||++++++ ++.++++.....                             .|.  .+++..+++
T Consensus       184 ~s~~~~k~~~~g---~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~  260 (390)
T 3b8x_A          184 FSSFYSNHIATM---EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAI  260 (390)
T ss_dssp             EECCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHH
T ss_pred             EEccCCCCCccC---CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHH
Confidence            432  3444332   369998876 677766654321                             121  166788887


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          399 IIRGMKTLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       399 ~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      .+..++.+..+.++..++++.+.+.|+++|+++
T Consensus       261 ~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~  293 (390)
T 3b8x_A          261 GIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLD  293 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            777788888888999999999999999988874

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.85  E-value=3.7e-20  Score=190.53  Aligned_cols=215  Identities=15%  Similarity=0.175  Sum_probs=155.5

Q ss_pred             CCCchh-HHHHHHHHHhhhC----------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhh-cC
Q 013019          206 RYGNPT-TVVVEEKMSALEG----------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KM  273 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~g----------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~-~~  273 (451)
                      +|+.+. ..+|+++|+++++          .++.+++++|++|+..++.+++++||+|+++++.|.+....    +. ..
T Consensus        81 ~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~~  156 (435)
T 3piu_A           81 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRD----LKWRT  156 (435)
T ss_dssp             HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----TTTTT
T ss_pred             ccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHH----HHHhc
Confidence            444433 5789999998887          46778888888999999999999999999999999986532    33 56


Q ss_pred             CcEEEEeCC-------CCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCC
Q 013019          274 GITATVIDP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  338 (451)
Q Consensus       274 Gi~v~~vd~-------~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~  338 (451)
                      |.++..++.       .|+++|++++++     .++++|++++|+||||.+.+   +++|.++|++||+++|+|++|+..
T Consensus       157 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~  236 (435)
T 3piu_A          157 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT  236 (435)
T ss_dssp             CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred             CCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence            888777653       389999999875     24899999999999999976   578888999999999999998652


Q ss_pred             Cc-----cccc----c---------CCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHH-
Q 013019          339 LN-----QKAL----S---------LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYL-  398 (451)
Q Consensus       339 ~~-----~~pl----~---------~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l-  398 (451)
                      ..     ....    +         ...++++.|+||.++.+| .++|++++ ++++.+.++......+.  ++..... 
T Consensus       237 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  313 (435)
T 3piu_A          237 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLV--SSQTQHLL  313 (435)
T ss_dssp             CCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCC--CHHHHHHH
T ss_pred             ccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHHHhhcCCC--CHHHHHHH
Confidence            11     1111    1         122388999999997555 56788888 56777777765544432  3333322 


Q ss_pred             --HHHhhH----HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          399 --IIRGMK----TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       399 --~lrgL~----tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                        ++...+    .+..+.++..++.+.+.+.|+++
T Consensus       314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (435)
T 3piu_A          314 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS  348 (435)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              222222    23344566677888888889876

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.85  E-value=2.1e-20  Score=185.53  Aligned_cols=213  Identities=16%  Similarity=0.177  Sum_probs=155.8

Q ss_pred             hhHHHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHccCCCeEEEcC-CCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae----~~vv~sSG~aAi~~al~all~~GD~VIv~~-~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      +...++++++++++|.+    +.+++++|++|+..++.+++++||+|++.+ +.|+..+   ...+...|+++..++.  
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~  113 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGE  113 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCT
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCC
Confidence            66789999999999842    477788888999999999999999988776 4454432   2334455777766653  


Q ss_pred             ---CCHHHHHHhhcCC-CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEEEECCcc
Q 013019          283 ---ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATK  357 (451)
Q Consensus       283 ---~D~d~Le~ai~~~-~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S~SK  357 (451)
                         .|+++|+++++++ ++++|++.+|+||||.+.++++|.++|+++|+++|+|++++.+... ....++.|+++.|++|
T Consensus       114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K  193 (366)
T 1m32_A          114 VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK  193 (366)
T ss_dssp             TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSS
T ss_pred             CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcc
Confidence               5899999999753 4889999999999999999999999999999999999998754321 1123478999999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHh-----------Hhh----C---CCccHHHHHHHHHhhHH------HHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLH-----------HVL----G---GALNPNAAYLIIRGMKT------LHLRVQQQ  413 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~-----------~~~----G---~~ls~~~a~l~lrgL~t------l~~Rl~~~  413 (451)
                      +++++.  ..|+++++++++++++...           ..+    +   ...+....+.+...++.      +....++.
T Consensus       194 ~~~~~~--g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~  271 (366)
T 1m32_A          194 CIQGVP--GFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRY  271 (366)
T ss_dssp             TTCCCS--SEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccCCC--ceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHH
Confidence            886553  2499999988876654310           000    1   24455444444444433      34456777


Q ss_pred             HHHHHHHHHHHHcC
Q 013019          414 NSTALRMAEILEAH  427 (451)
Q Consensus       414 ~~nA~~Lae~L~~~  427 (451)
                      .++++.+.+.|+++
T Consensus       272 ~~~~~~l~~~L~~~  285 (366)
T 1m32_A          272 QQNQRSLVAGMRAL  285 (366)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
Confidence            78888999999876

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.85  E-value=1.7e-19  Score=182.90  Aligned_cols=211  Identities=12%  Similarity=0.051  Sum_probs=144.7

Q ss_pred             HHHHHHHHHhhhC--------CCcEEE--eCCHHHHHHHHHHHHc---cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          212 TVVVEEKMSALEG--------AESTVI--MASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       212 ~~~Lee~LA~l~g--------ae~~vv--~sSG~aAi~~al~all---~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      ...|++.++++++        .++.++  +++|++|+..++.++.   ++||+|++++|+|.+....+    +..|.++.
T Consensus        73 ~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~~  148 (401)
T 7aat_A           73 LADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIF----RDAGLQLQ  148 (401)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHH----HHTTCEEE
T ss_pred             CHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHH----HHcCCeeE
Confidence            4567777777654        345544  6677799998876654   89999999999999876544    44577766


Q ss_pred             EeCC-------CCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcccc---
Q 013019          279 VIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA---  343 (451)
Q Consensus       279 ~vd~-------~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~p---  343 (451)
                      .++.       .|++++++.+++  .++++|++++|+||||.+.+   +++|+++|++||+++|+|++|........   
T Consensus       149 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~  228 (401)
T 7aat_A          149 AYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRD  228 (401)
T ss_dssp             EEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHH
T ss_pred             eeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCcccc
Confidence            6542       267766666642  24899999999999998765   78899999999999999999876533211   


Q ss_pred             --------ccCCCcEEEECCcccCCccccceeEEEEe---CHH----HHHHHHHHhHhhCCCccHHHHHHHHHh------
Q 013019          344 --------LSLGADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRG------  402 (451)
Q Consensus       344 --------l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~---~~e----li~~lr~~~~~~G~~ls~~~a~l~lrg------  402 (451)
                              ......+++.|+||.++.+|. +.|+++.   +++    +++.++..........+...+..+...      
T Consensus       229 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  307 (401)
T 7aat_A          229 AWALRHFIEQGIDVVLSQSYAKNMGLYGE-RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPEL  307 (401)
T ss_dssp             THHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhcCCcEEEEecCCcccccccC-ceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHH
Confidence                    112356899999999998774 5677664   665    445555444444334444444333222      


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          403 ----MKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       403 ----L~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                          .+.+....++..++.+.+.+.|+++
T Consensus       308 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  336 (401)
T 7aat_A          308 RKEWLVEVKGMADRIISMRTQLVSNLKKE  336 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                2334444566777888888888876

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.85  E-value=4.6e-20  Score=194.76  Aligned_cols=213  Identities=12%  Similarity=0.068  Sum_probs=159.0

Q ss_pred             HHHHHHHhhhCCC----cE--EEeCCHHHHHHHHHHHHccCC--------CeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          214 VVEEKMSALEGAE----ST--VIMASGMSASTVMLLALVPAG--------GHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       214 ~Lee~LA~l~gae----~~--vv~sSG~aAi~~al~all~~G--------D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      ++++++++++|.+    ..  +++++|++|+..++.+++.+|        |+|+++.+.|.+....    +...|+++..
T Consensus       143 ~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~----~~~~G~~v~~  218 (514)
T 3mad_A          143 EVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA----AQYFGIKLVR  218 (514)
T ss_dssp             HHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH----HHHHTCEEEE
T ss_pred             HHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH----HHHcCCeeEE
Confidence            4556678888865    44  888889999999999998877        9999999999986543    4456888888


Q ss_pred             eCCC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc------------cc
Q 013019          280 IDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------------QK  342 (451)
Q Consensus       280 vd~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~------------~~  342 (451)
                      ++.+     |+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|++||+|++|+.+..            ..
T Consensus       219 v~~~~~~~~d~~~Le~~i~~~-~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~  297 (514)
T 3mad_A          219 TPLDADYRADVAAMREAITPN-TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD  297 (514)
T ss_dssp             ECBCTTSCBCHHHHHHHCCTT-EEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCS
T ss_pred             eeeCCCCCCCHHHHHHHhccC-CEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCccc
Confidence            8754     899999999874 99999999999999999999999999999999999999875432            12


Q ss_pred             cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH--h----------hCCCc--cHHHHHHHHHh--hHHH
Q 013019          343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--V----------LGGAL--NPNAAYLIIRG--MKTL  406 (451)
Q Consensus       343 pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~----------~G~~l--s~~~a~l~lrg--L~tl  406 (451)
                      ....|+|+++.|++|++.++.  ..|+++.+++.+.+......  .          .|...  ....+|.+++.  .+.+
T Consensus       298 ~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~  375 (514)
T 3mad_A          298 FRLEGVTSVSADTHKYGYGAK--GTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGY  375 (514)
T ss_dssp             TTSTTCCEEEECTTTTTCCCS--SCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEECchhccCCCC--CeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHH
Confidence            234588999999999965543  36777776654433211000  0          11111  12345555443  3446


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          407 HLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      ..++++..++++.+.+.|++.|+++.+
T Consensus       376 ~~~~~~~~~~~~~l~~~L~~~~g~~~~  402 (514)
T 3mad_A          376 LDATRRILQAADRLKAGVRAIPSLKIL  402 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCEES
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCeEEe
Confidence            677888899999999999998887543

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.85  E-value=4.2e-20  Score=185.13  Aligned_cols=214  Identities=14%  Similarity=0.103  Sum_probs=155.1

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae---~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      +..+++++++++++|.+   +.++ +++|++|+..++.+++++||+|++.++.|.+.. .. ..+...|+++..++.   
T Consensus        52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~-~~-~~~~~~g~~~~~v~~~~~  129 (376)
T 3f0h_A           52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR-FV-QLCEIHEIPYVALKLEHG  129 (376)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH-HH-HHHHHcCCceEEEeCCCC
Confidence            55678999999999874   4555 456789999999999999999999988776633 22 345566777776642   


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcccC
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l  359 (451)
                        .|+++|++++++ ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. ......|+|+++.|++|++
T Consensus       130 ~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l  208 (376)
T 3f0h_A          130 KKLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVL  208 (376)
T ss_dssp             CCCCHHHHHTTTTS-CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTT
T ss_pred             CCCCHHHHHHhhcc-CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccc
Confidence              489999998876 499999999999999999999999999999999999999765432 2222457899999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHhH------------h-----hCCCccHHHHHHHHHhhHH------HHHHHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLHH------------V-----LGGALNPNAAYLIIRGMKT------LHLRVQQQNST  416 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~~------------~-----~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~n  416 (451)
                      +++.  .+|+++.+++++++++....            .     .....+....+.+..+++.      +....++..++
T Consensus       209 ~~~~--G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~  286 (376)
T 3f0h_A          209 ACPP--GISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQ  286 (376)
T ss_dssp             CCCS--SCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cCCC--ceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9443  26889999998888764210            0     0112223221222223332      34455666677


Q ss_pred             HHHHHHHHHcCC
Q 013019          417 ALRMAEILEAHP  428 (451)
Q Consensus       417 A~~Lae~L~~~p  428 (451)
                      ++.+.+.|++.+
T Consensus       287 ~~~l~~~L~~~~  298 (376)
T 3f0h_A          287 AADFRAKIKDLP  298 (376)
T ss_dssp             HHHHHHHTTTSS
T ss_pred             HHHHHHHHHHcC
Confidence            888888887764

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.85  E-value=2.5e-20  Score=184.05  Aligned_cols=215  Identities=13%  Similarity=0.126  Sum_probs=156.5

Q ss_pred             hhHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae---~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      +...+++++|++++|.+   +.++ +++|++|+..++.++++  |+|+++++.|.+. . +...+...|+++..++.   
T Consensus        33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~-~~~~~~~~g~~~~~v~~~~~  108 (353)
T 2yrr_A           33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ-R-VAEMAALHGLDPEVLDFPPG  108 (353)
T ss_dssp             HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH-H-HHHHHHHTTCCEEEEECCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH-H-HHHHHHHcCCceEEEeCCCC
Confidence            33788999999999973   4455 46677999999988876  8999999888875 2 22445667888777753   


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcccC
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l  359 (451)
                        .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. .....++.|+++.|++|++
T Consensus       109 ~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~  188 (353)
T 2yrr_A          109 EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCL  188 (353)
T ss_dssp             SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTT
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccc
Confidence              5899999999762389999999999999999999999999999999999999864322 1122347899999999977


Q ss_pred             CccccceeEEEEeCHHHHHHHHH-------------H--hHhhCCCccHHHHHHHHHhhHH-----HHHHHHHHHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRN-------------L--HHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALR  419 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~-------------~--~~~~G~~ls~~~a~l~lrgL~t-----l~~Rl~~~~~nA~~  419 (451)
                      +++..  .|+++++++++++++.             .  ......+.+......+...++.     +....++..++++.
T Consensus       189 ~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  266 (353)
T 2yrr_A          189 SAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAW  266 (353)
T ss_dssp             CCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cCCCc--eEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            65432  5999999988876641             0  0111223444443333333332     34456777788889


Q ss_pred             HHHHHHcCCCeE
Q 013019          420 MAEILEAHPKVL  431 (451)
Q Consensus       420 Lae~L~~~p~V~  431 (451)
                      +.+.|++. +++
T Consensus       267 l~~~L~~~-g~~  277 (353)
T 2yrr_A          267 VLEELKAR-GFR  277 (353)
T ss_dssp             HHHHHHHT-TCE
T ss_pred             HHHHHHHC-CCc
Confidence            99999886 554

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.85  E-value=4.2e-20  Score=189.70  Aligned_cols=211  Identities=13%  Similarity=0.067  Sum_probs=152.9

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHH--HHHHHHHcc--C----------CCeEEEcCCCCcchHHHHHHhhhcC
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIMASGMSAS--TVMLLALVP--A----------GGHIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~sSG~aAi--~~al~all~--~----------GD~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      .....|+++|+++++.  ++.++++++++++  ..++.+++.  +          ||+|++++|+|.+....    +...
T Consensus        78 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~----~~~~  153 (427)
T 3ppl_A           78 DGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSI----TERF  153 (427)
T ss_dssp             SCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHH----HHHT
T ss_pred             CCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHH----HHHc
Confidence            3467899999999986  4455555556888  477888877  6          99999999999986644    4456


Q ss_pred             CcEEEEeCC----CCHHHHHHhhcCCCeEEEEEe-CCCCCccccccHH---HHHHHH-HhcCCEEEEecCCCCCCcc---
Q 013019          274 GITATVIDP----ADMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLNQ---  341 (451)
Q Consensus       274 Gi~v~~vd~----~D~d~Le~ai~~~~tklV~le-sPsNPtG~v~DL~---~IaelA-~~~g~~lVVD~tfa~~~~~---  341 (451)
                      |.++..++.    .|+++|+++++..++++|+++ +|+||||.+++.+   +|+++| +++|+++|+|++|+.....   
T Consensus       154 g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~  233 (427)
T 3ppl_A          154 GFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEF  233 (427)
T ss_dssp             TCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCC
Confidence            777766643    389999999954459999876 7899999999876   888888 9999999999998752111   


Q ss_pred             ----ccc-------cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH-----
Q 013019          342 ----KAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----  405 (451)
Q Consensus       342 ----~pl-------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t-----  405 (451)
                          ...       ..+.++++.|+||+ +++| .++|+++++++++++++......+...+...+..+...++.     
T Consensus       234 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  311 (427)
T 3ppl_A          234 PEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVR  311 (427)
T ss_dssp             CCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHH
T ss_pred             CCccchhhhhhccCCCCcEEEEechhhc-cCcC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHH
Confidence                111       23567999999999 4444 57899999999999998887776666677766555444432     


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHc
Q 013019          406 --LHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       406 --l~~Rl~~~~~nA~~Lae~L~~  426 (451)
                        +....+...++.+.+.+.|.+
T Consensus       312 ~~~~~~~~~~~~~~~~l~~~L~~  334 (427)
T 3ppl_A          312 AVMRKHAASLAPKFNKVLEILDS  334 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence              222233344555566666644

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.85  E-value=1.5e-19  Score=183.97  Aligned_cols=209  Identities=13%  Similarity=0.121  Sum_probs=164.7

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      .|...+|+++|++++|.++.+++++|++|+..++.++ +++||+|+++.+.|.++...+    ...|+++.+++.     
T Consensus        31 g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~  106 (394)
T 1o69_A           31 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPI----CYLKAKPVFIDCDETYN  106 (394)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSS
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEEeCCCCC
Confidence            4778999999999999988999999999999999999 899999999999999976444    346888888764     


Q ss_pred             CCHHHHHHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccc---c-CCCcEEEECCc
Q 013019          283 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL---S-LGADLVLHSAT  356 (451)
Q Consensus       283 ~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl---~-~GaDiVv~S~S  356 (451)
                      .|+++|++++++.  ++++|++++   |+|...++++|.++|+++|+++|+|++++.+......   . .++|+...|.+
T Consensus       107 ~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~  183 (394)
T 1o69_A          107 IDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGN  183 (394)
T ss_dssp             BCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             cCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCC
Confidence            3789999998752  489999974   8999999999999999999999999999854221111   1 13456666668


Q ss_pred             ccCCccccceeEEEEeC-HHHHHHHHHHhHhhCC--------------CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG--------------ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~--------------~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~La  421 (451)
                      |.++|.+   +|+++++ ++++++++........              .+++..+.+.+..++.+..++++..++++.+.
T Consensus       184 K~l~~~~---~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~  260 (394)
T 1o69_A          184 KIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK  260 (394)
T ss_dssp             SSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCC---ceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888654   8999995 7888888765432100              04556666666567778888888899999999


Q ss_pred             HHHHcC
Q 013019          422 EILEAH  427 (451)
Q Consensus       422 e~L~~~  427 (451)
                      +.|++.
T Consensus       261 ~~L~~~  266 (394)
T 1o69_A          261 EFLGEY  266 (394)
T ss_dssp             HHHTTT
T ss_pred             HHhccc
Confidence            999876

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.85  E-value=1.5e-19  Score=181.21  Aligned_cols=214  Identities=14%  Similarity=0.169  Sum_probs=153.9

Q ss_pred             HHHHHHHHHhhhCC------CcEEEeCCHHHHHHHHHHHHc---cCCCeEEEcCC-CCcchHHHHHHhhhcCCcEEEEeC
Q 013019          212 TVVVEEKMSALEGA------ESTVIMASGMSASTVMLLALV---PAGGHIVTTTD-CYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       212 ~~~Lee~LA~l~ga------e~~vv~sSG~aAi~~al~all---~~GD~VIv~~~-~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ..+++++++++++.      ++.+++++|++|+..++.++.   ++||+|++.++ .|+...   ...+...|.++..++
T Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v~  116 (385)
T 2bkw_A           40 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVVR  116 (385)
T ss_dssp             HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEEe
Confidence            45678888888875      345666778899999999997   89999988744 454432   134456788888887


Q ss_pred             C------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCCc-cccccCCCcEEE
Q 013019          282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLVL  352 (451)
Q Consensus       282 ~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~~-~~pl~~GaDiVv  352 (451)
                      .      .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++  |+++|+|++++.+.. .....+++|+++
T Consensus       117 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~  196 (385)
T 2bkw_A          117 PLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFAL  196 (385)
T ss_dssp             CSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred             cCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEE
Confidence            6      4899999999763489999999999999999999999999999  999999999874422 122245789999


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHH-HHH------------------HH-hHh-hC-----CCccHHHHHHHHHhhHH-
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVT-QIR------------------NL-HHV-LG-----GALNPNAAYLIIRGMKT-  405 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~-~lr------------------~~-~~~-~G-----~~ls~~~a~l~lrgL~t-  405 (451)
                      .|++|+++|+..  .|++++++++++ +++                  .. ... .+     ...+......+...++. 
T Consensus       197 ~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~  274 (385)
T 2bkw_A          197 TASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI  274 (385)
T ss_dssp             EESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             ecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence            999998875431  489999988776 542                  11 111 11     23444444333333333 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHH-HcCCCeE
Q 013019          406 ----LHLRVQQQNSTALRMAEIL-EAHPKVL  431 (451)
Q Consensus       406 ----l~~Rl~~~~~nA~~Lae~L-~~~p~V~  431 (451)
                          +..+.++..++++.+.+.| ++. +++
T Consensus       275 ~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~  304 (385)
T 2bkw_A          275 LEEGLHKRWDLHREMSDWFKDSLVNGL-QLT  304 (385)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHTTT-CCE
T ss_pred             HHccHHHHHHHHHHHHHHHHHHHHHhc-Cce
Confidence                3445677778889999999 776 553

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.84  E-value=6.2e-20  Score=186.60  Aligned_cols=216  Identities=16%  Similarity=0.191  Sum_probs=156.2

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc------cCCCe-EEEcCCCCcchHHHHHHhhhcC--CcEEE
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGH-IVTTTDCYRKTRIFIETVLPKM--GITAT  278 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all------~~GD~-VIv~~~~Y~~t~~~l~~~l~~~--Gi~v~  278 (451)
                      +...+++++|++++|.+  +.+++++|++++..++.+++      ++||+ |+++.+.|+++...+.......  |.++.
T Consensus        71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~  150 (416)
T 1qz9_A           71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR  150 (416)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEE
Confidence            56788999999999974  56666777789988888776      88997 5555667776655443333333  88888


Q ss_pred             EeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEEEECCcc
Q 013019          279 VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLVLHSATK  357 (451)
Q Consensus       279 ~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiVv~S~SK  357 (451)
                      +++.  +++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... ....+|+|+++.|++|
T Consensus       151 ~v~~--~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K  227 (416)
T 1qz9_A          151 LVDS--PEELPQAIDQ-DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYK  227 (416)
T ss_dssp             EESS--GGGHHHHCST-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSS
T ss_pred             EeCc--HHHHHHHhCC-CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcc
Confidence            8886  7899999987 4999999999999999999999999999999999999998754221 1123578999999999


Q ss_pred             cCC-cccccee-EEEEeCHHHHHHHHHHh-----------------------HhhCCCccHHHHHHHHHhhHH-----HH
Q 013019          358 FIG-GHNDVLA-GSISGSGKLVTQIRNLH-----------------------HVLGGALNPNAAYLIIRGMKT-----LH  407 (451)
Q Consensus       358 ~l~-G~gdv~g-G~Iv~~~eli~~lr~~~-----------------------~~~G~~ls~~~a~l~lrgL~t-----l~  407 (451)
                      +++ |.+   + |+++++++++++++...                       .....+.+......+...++.     +.
T Consensus       228 ~l~~g~~---~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~  304 (416)
T 1qz9_A          228 YLNGGPG---SQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMA  304 (416)
T ss_dssp             TTCCCTT---CCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHH
T ss_pred             cCCCCCC---CeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence            975 444   5 89999888776654321                       111123344433333333332     34


Q ss_pred             HHHHHHHHHHHHHHHHHHcC-C--CeE
Q 013019          408 LRVQQQNSTALRMAEILEAH-P--KVL  431 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~~-p--~V~  431 (451)
                      ...++..++++.+.+.|++. |  ++.
T Consensus       305 ~~~~~~~~~~~~l~~~L~~~~~~~g~~  331 (416)
T 1qz9_A          305 SLRRKSLALTDLFIELVEQRCAAHELT  331 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCeE
Confidence            45677778888888889875 5  664

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.84  E-value=2.1e-19  Score=183.58  Aligned_cols=211  Identities=13%  Similarity=0.115  Sum_probs=146.4

Q ss_pred             HHHHHHHHHhh----hCCC---cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          212 TVVVEEKMSAL----EGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       212 ~~~Lee~LA~l----~gae---~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      ...|++.++++    .+.+   +.+++++|++|+..++.+++++||+|++++|.|.+...    .+...|.++..++.  
T Consensus        82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~  157 (418)
T 3rq1_A           82 IPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV----ICSDTGRTLVTYSLFD  157 (418)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH----HHHHTTCEEEEECSBC
T ss_pred             hHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHH----HHHHcCCEEEEEeeeC
Confidence            34455555554    3555   66777777799999999999999999999999988664    34556888877763  


Q ss_pred             ----CCHHHHHHhhcC----CCeEEEEEeCC-CCCccccccHHH---HHHHHH------hcCCEEEEecCCCCCCccc--
Q 013019          283 ----ADMEGLEAALNN----NNVSLFFTESP-TNPFLRCVDVKL---VSDLCH------KKGAIVCIDGTFATPLNQK--  342 (451)
Q Consensus       283 ----~D~d~Le~ai~~----~~tklV~lesP-sNPtG~v~DL~~---IaelA~------~~g~~lVVD~tfa~~~~~~--  342 (451)
                          .|+++|++++++    +..++|++++| +||||.+.+.++   |+++|+      ++|+++|+|++|.......  
T Consensus       158 ~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~  237 (418)
T 3rq1_A          158 EHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDE  237 (418)
T ss_dssp             TTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHH
T ss_pred             CCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHH
Confidence                378999999874    32348999999 999999998554   555565      8999999999985432110  


Q ss_pred             --c-c----cCCCc---EEEECCcccCCccccceeEEEEe---CHHHHHHHHHHhHhhC----CCccHHHHHHHHHhhHH
Q 013019          343 --A-L----SLGAD---LVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHVLG----GALNPNAAYLIIRGMKT  405 (451)
Q Consensus       343 --p-l----~~GaD---iVv~S~SK~l~G~gdv~gG~Iv~---~~eli~~lr~~~~~~G----~~ls~~~a~l~lrgL~t  405 (451)
                        + .    ...-+   +++.|+||.++.+| .++|++++   +++++++++..+....    ..++...+..+...++.
T Consensus       238 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  316 (418)
T 3rq1_A          238 VRAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVAD  316 (418)
T ss_dssp             HHGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCceEEEEEeCCCCCcCcC-CcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCC
Confidence              1 1    11223   78899999998776 56788888   8999988877654321    23455554444433322


Q ss_pred             ----------HHHHHHHHHHHHHHHHHHHHcC
Q 013019          406 ----------LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       406 ----------l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                                +....++..++.+.+.+.|+++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (418)
T 3rq1_A          317 PAKFKEYEAERNCYYQLIRDRADIFKQEAAQV  348 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                      1122345566777788888765

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.84  E-value=1.3e-19  Score=183.65  Aligned_cols=228  Identities=12%  Similarity=0.096  Sum_probs=164.5

Q ss_pred             CccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc-------cCCCeEEEcCCCCcchHHH--------
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIF--------  265 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all-------~~GD~VIv~~~~Y~~t~~~--------  265 (451)
                      .+.|+++.++...+|+++|++++|.++++++++|++|+..++..+.       .+||+|++.++.|.+....        
T Consensus        69 ~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~  148 (395)
T 3nx3_A           69 LHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANE  148 (395)
T ss_dssp             SCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCH
T ss_pred             cccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCc
Confidence            4556778899999999999999998889999999999999988775       3479999999999764321        


Q ss_pred             -HHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC--
Q 013019          266 -IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP--  338 (451)
Q Consensus       266 -l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~--  338 (451)
                       +...+...+.++..++..|+++|++++++ ++++|+++.++|++|.+.+    +++|.++|++||++||+||++...  
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~  227 (395)
T 3nx3_A          149 KYQKPFKPLISGVKFAKYNDISSVEKLVNE-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGR  227 (395)
T ss_dssp             HHHGGGCSCCSCEEEECTTCHHHHHTTCCT-TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred             ccccccCCCCCCcEEeCCCCHHHHHHhccC-CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCc
Confidence             11222334456777888899999999986 4999999999999998876    999999999999999999997632  


Q ss_pred             ----CccccccCCCcEEEECCcccCCccccceeEEEEeCHHH-HHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHH
Q 013019          339 ----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQ  411 (451)
Q Consensus       339 ----~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el-i~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~  411 (451)
                          ..........|++  +++|.+++ | .++|++++++++ ++.++..........++..+..++..++.+.  ..++
T Consensus       228 ~g~~~~~~~~~~~~d~~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~  303 (395)
T 3nx3_A          228 SGKFFAYEHAQILPDIM--TSAKALGC-G-LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKILE  303 (395)
T ss_dssp             TSSSSGGGGGTCCCSEE--EECGGGTT-T-SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             CCcchhHHhcCCCCCEE--EecccccC-C-CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHHH
Confidence                1122223345655  57899986 4 578999999988 7776544322233456777666666665442  2244


Q ss_pred             HHHHHHHHHHHHH----HcCCCeEEE
Q 013019          412 QQNSTALRMAEIL----EAHPKVLLL  433 (451)
Q Consensus       412 ~~~~nA~~Lae~L----~~~p~V~~V  433 (451)
                      +..++.+.+.+.|    .++|.+..+
T Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~~  329 (395)
T 3nx3_A          304 NVNKLTPYLEQSLDELINEFDFCKKR  329 (395)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            4445555555544    346666544

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.84  E-value=7.9e-20  Score=188.14  Aligned_cols=215  Identities=13%  Similarity=0.099  Sum_probs=152.3

Q ss_pred             HHHHHHHHHhhh--------CCCcEEEeCCHHHHHHHHHHHHccCCC--------------eEEEc-CCCCcchHHHHH-
Q 013019          212 TVVVEEKMSALE--------GAESTVIMASGMSASTVMLLALVPAGG--------------HIVTT-TDCYRKTRIFIE-  267 (451)
Q Consensus       212 ~~~Lee~LA~l~--------gae~~vv~sSG~aAi~~al~all~~GD--------------~VIv~-~~~Y~~t~~~l~-  267 (451)
                      ...|+++|++++        +.++.+++++|++|+.+++.+++++||              +|+++ +|.|..+..... 
T Consensus        85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~  164 (444)
T 3if2_A           85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVE  164 (444)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSS
T ss_pred             CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccc
Confidence            567888888876        236788888888999999999999998              78876 888987543210 


Q ss_pred             -HhhhcCCcEEEEeC----------CCCHHHHHHh---hcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEE
Q 013019          268 -TVLPKMGITATVID----------PADMEGLEAA---LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVC  330 (451)
Q Consensus       268 -~~l~~~Gi~v~~vd----------~~D~d~Le~a---i~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lV  330 (451)
                       ..+...|..+..++          ..|+++|+++   +++ ++++|++++|+||||.+++   +++|.++|++||++||
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li  243 (444)
T 3if2_A          165 GQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLI  243 (444)
T ss_dssp             SCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             cchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEE
Confidence             02344566665554          2589999998   565 4999999999999999998   8889999999999999


Q ss_pred             EecCCCCCCcc------ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH
Q 013019          331 IDGTFATPLNQ------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (451)
Q Consensus       331 VD~tfa~~~~~------~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~  404 (451)
                      +|++|+.+...      .+...+.++++.|+||+ +++| .++|+++++++++++++......+...++..+..+...++
T Consensus       244 ~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~  321 (444)
T 3if2_A          244 IDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPG-MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVA  321 (444)
T ss_dssp             EECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             EECCCCCcccccccccccccCCCCEEEEechhhc-cCCC-CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            99998753211      11123678999999997 5454 5789999999999998877665544444444443333222


Q ss_pred             H------HHH-HHHHHHHHHHHHHHHHHc-CCC
Q 013019          405 T------LHL-RVQQQNSTALRMAEILEA-HPK  429 (451)
Q Consensus       405 t------l~~-Rl~~~~~nA~~Lae~L~~-~p~  429 (451)
                      .      +.. ..+...++.+.+.+.|.+ .+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  354 (444)
T 3if2_A          322 NDRIKQLSDNEIKPFYQKQATLAVKLLKQALGD  354 (444)
T ss_dssp             TSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1      111 223445566677777765 343

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.83  E-value=2e-19  Score=178.53  Aligned_cols=204  Identities=13%  Similarity=0.125  Sum_probs=152.9

Q ss_pred             CCCchhHHHHHHHHHhhhC---C--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          206 RYGNPTTVVVEEKMSALEG---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g---a--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +|+++...+|+++|+++++   .  ++.+++++|++++..++.++   ||+|+++ |.|.+....    +...|.++..+
T Consensus        52 ~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~----~~~~g~~~~~v  123 (335)
T 1uu1_A           52 IYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIF----AKAVGAKFLEV  123 (335)
T ss_dssp             SCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHH----HHHHTCEEEEC
T ss_pred             cCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHH----HHHcCCeEEEe
Confidence            3455557889999999998   4  45666677779999998887   9999999 999886543    34567887777


Q ss_pred             CCC-----CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc---cc-cccCCCcEE
Q 013019          281 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QK-ALSLGADLV  351 (451)
Q Consensus       281 d~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~---~~-pl~~GaDiV  351 (451)
                      +..     |+++|     + ++++|++++|+||||.+.+.++|.++++..| ++|+|++|+....   .. ....+.+++
T Consensus       124 ~~~~~~~~d~~~l-----~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~  196 (335)
T 1uu1_A          124 PLTKDLRIPEVNV-----G-EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAV  196 (335)
T ss_dssp             CCCTTSCCCCCCC-----C-TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEE
T ss_pred             ccCCCCCCCHHHc-----C-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEE
Confidence            542     34433     3 4899999999999999999999999999889 9999999863211   11 112456899


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +.|+||.++.+| .+.|+++++++++++++.....+  ..++..++.+...|+   .+..+.++..++++.+.+.|+++
T Consensus       197 ~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  272 (335)
T 1uu1_A          197 IRTFSKAFSLAA-QRVGYVVASEKFIDAYNRVRLPF--NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_dssp             EEESTTTTTCGG-GCCEEEEECHHHHHHHHHHSCTT--CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecchhhcCCcc-cCeEEEEeCHHHHHHHHHhcCCC--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999998665 56899999999999888765443  455665555544443   35556677778888899999876

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.83  E-value=1.9e-19  Score=184.14  Aligned_cols=190  Identities=11%  Similarity=0.109  Sum_probs=142.4

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHH--HHHHHHcc--C---------CCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIMASGMSAST--VMLLALVP--A---------GGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~--~al~all~--~---------GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      +...+|+++|+++++.  ++.+++++|++++.  .++.+++.  +         ||+|++++|.|.++...+    ...|
T Consensus        70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g  145 (423)
T 3ez1_A           70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL----QTLG  145 (423)
T ss_dssp             TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH----HHHT
T ss_pred             CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH----HHcC
Confidence            3467899999999986  45555666668997  88888887  7         599999999998866443    4457


Q ss_pred             cEEEEeCC----CCHHHHHHhhc-CCCeEEEEEe-CCCCCccccccHH---HHHHHH-HhcCCEEEEecCCCCCCcc---
Q 013019          275 ITATVIDP----ADMEGLEAALN-NNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLNQ---  341 (451)
Q Consensus       275 i~v~~vd~----~D~d~Le~ai~-~~~tklV~le-sPsNPtG~v~DL~---~IaelA-~~~g~~lVVD~tfa~~~~~---  341 (451)
                      .++..++.    .|+++|+++++ ..++++|++. +|+||||.+++.+   +|+++| +++|+++|+|++|......   
T Consensus       146 ~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~  225 (423)
T 3ez1_A          146 FELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEED  225 (423)
T ss_dssp             CEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSS
T ss_pred             CEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCC
Confidence            77666543    48999999994 2359999865 8999999999866   888888 8999999999998742111   


Q ss_pred             -----ccc-------cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH
Q 013019          342 -----KAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT  405 (451)
Q Consensus       342 -----~pl-------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t  405 (451)
                           ...       ..+.++++.|+||. .++| .++|+++++++++++++......+...++..++.+...++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  299 (423)
T 3ez1_A          226 RAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAG-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTE  299 (423)
T ss_dssp             CCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSS-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHH
T ss_pred             CCCCcchhhhhhccCCCCeEEEEeCchhh-ccCC-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHh
Confidence                 111       23567999999997 3333 46899999999999998887776666777766655544443

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.83  E-value=6.9e-19  Score=182.82  Aligned_cols=217  Identities=13%  Similarity=0.103  Sum_probs=152.6

Q ss_pred             hhHHHHHHHHHhhh-CCC-------cEEE--eCCHHHHHHH--HHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEE
Q 013019          210 PTTVVVEEKMSALE-GAE-------STVI--MASGMSASTV--MLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  277 (451)
Q Consensus       210 pt~~~Lee~LA~l~-gae-------~~vv--~sSG~aAi~~--al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v  277 (451)
                      +....|++.+++++ |.+       +.++  +++|++|+..  .+.+++.+||+|++++|.|......+...++..|.++
T Consensus        94 ~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v  173 (448)
T 3meb_A           94 AGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPY  173 (448)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCC
T ss_pred             cchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeE
Confidence            44567888888886 643       4555  6777799876  5667788999999999999987765543333667766


Q ss_pred             EEeCC---C-----CHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc--
Q 013019          278 TVIDP---A-----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--  342 (451)
Q Consensus       278 ~~vd~---~-----D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~--  342 (451)
                      ..++.   .     |+++|++++++  .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.......  
T Consensus       174 ~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~  253 (448)
T 3meb_A          174 KEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFE  253 (448)
T ss_dssp             EEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHH
T ss_pred             EEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcc
Confidence            66543   2     88999999874  24789999999999999986   5569999999999999999987543221  


Q ss_pred             ----cc----cCCC-cEEEECCcccCCccccceeEEE--Ee---------CH----HHHHHHHHHhHhhCCCccHHHHHH
Q 013019          343 ----AL----SLGA-DLVLHSATKFIGGHNDVLAGSI--SG---------SG----KLVTQIRNLHHVLGGALNPNAAYL  398 (451)
Q Consensus       343 ----pl----~~Ga-DiVv~S~SK~l~G~gdv~gG~I--v~---------~~----eli~~lr~~~~~~G~~ls~~~a~l  398 (451)
                          ++    ..+. .+++.|+||.++.+| .+.|++  ++         ++    ++++.++..........+...++.
T Consensus       254 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a  332 (448)
T 3meb_A          254 ADAFAVRMFVDAGVEVLVAQSFSKNFGLYG-ERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYI  332 (448)
T ss_dssp             HHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             cCchhHHHHhhcCCcEEEEecccccCCCcc-ccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHH
Confidence                11    2233 477999999999776 456776  55         44    555666554444444455555554


Q ss_pred             HHHhh----------HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          399 IIRGM----------KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       399 ~lrgL----------~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +...|          +.+....++..++.+.+.+.|+++
T Consensus       333 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          333 VQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44333          224445566777888888889876

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.83  E-value=1.1e-19  Score=187.50  Aligned_cols=212  Identities=12%  Similarity=0.089  Sum_probs=146.8

Q ss_pred             hhHHHHHHHHHhhh----CC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE-------
Q 013019          210 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-------  276 (451)
Q Consensus       210 pt~~~Lee~LA~l~----ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~-------  276 (451)
                      +...+|+++|++++    +.  ++.+++++|++++..+ .+++++||+|++++|.|.+....+.    ..|.+       
T Consensus       111 ~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~g~~~~~~  185 (449)
T 3qgu_A          111 QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSV----MMGMTGDHNGTG  185 (449)
T ss_dssp             TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHH----HHTCSCCBCSSS
T ss_pred             CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHH----HcCCcccccccc
Confidence            44678999999987    33  5566666667888887 8889999999999999998765443    33444       


Q ss_pred             ---EEEeCCCCHHHHHHhhcC-CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----ccc
Q 013019          277 ---ATVIDPADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL  344 (451)
Q Consensus       277 ---v~~vd~~D~d~Le~ai~~-~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~pl  344 (451)
                         +..++..+.+.+...+.+ .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......     ...
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~  265 (449)
T 3qgu_A          186 FDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIY  265 (449)
T ss_dssp             BTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGG
T ss_pred             cceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHh
Confidence               555543321111111211 24899999999999999985   788889999999999999998652211     111


Q ss_pred             c----CCCcEEEECCcccCCccccceeEEEEeCHHHHH--------HHHHHhHhhCCCccHHHHHHHHHhh-----HHHH
Q 013019          345 S----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVT--------QIRNLHHVLGGALNPNAAYLIIRGM-----KTLH  407 (451)
Q Consensus       345 ~----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~--------~lr~~~~~~G~~ls~~~a~l~lrgL-----~tl~  407 (451)
                      .    .+.++++.|+||.++.+| .+.|++++++++++        .+...........++..+..+...+     +.+.
T Consensus       266 ~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~  344 (449)
T 3qgu_A          266 EIPGADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMN  344 (449)
T ss_dssp             GSTTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHH
T ss_pred             hccCCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHH
Confidence            1    245799999999998555 46899999887765        3444333333345555554444333     3455


Q ss_pred             HHHHHHHHHHHHHHHHHHcC
Q 013019          408 LRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ...++..++.+.+.+.|+++
T Consensus       345 ~~~~~~~~~~~~l~~~L~~~  364 (449)
T 3qgu_A          345 AMIKFYKENAQILKTTFTEM  364 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHC
Confidence            66677788899999999886

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.83  E-value=3e-19  Score=181.33  Aligned_cols=216  Identities=16%  Similarity=0.108  Sum_probs=146.2

Q ss_pred             chhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHH-hhhcCCcEEEEeCC
Q 013019          209 NPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP  282 (451)
Q Consensus       209 npt~~~Le----e~LA~l~gae~~-vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~-~l~~~Gi~v~~vd~  282 (451)
                      ++..+.++    +++++++|.+.. +++++|++|+..++.+++++||+|+++++.|.+....... .....++.+..++.
T Consensus        66 ~~~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  145 (417)
T 3n0l_A           66 CEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV  145 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECC
T ss_pred             chHHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccC
Confidence            34444454    488999998665 8899999999999999999999999999999875432111 11123344444432


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-----cccccCCCcEEE
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVL  352 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-----~~pl~~GaDiVv  352 (451)
                           .|+++|++++++.++++|++++|+|  |.+.|+++|.++|++||+++|+|+++..+..     ..++. ++|+++
T Consensus       146 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~  222 (417)
T 3n0l_A          146 ELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVS  222 (417)
T ss_dssp             CTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEE
T ss_pred             CCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEE
Confidence                 5899999999733489999887775  8899999999999999999999999643211     12222 479999


Q ss_pred             ECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhC-CCccHHH--H-HHHHHh--hHHHHHHHHHHHHHHHHHHHHHH
Q 013019          353 HSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNA--A-YLIIRG--MKTLHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G-~~ls~~~--a-~l~lrg--L~tl~~Rl~~~~~nA~~Lae~L~  425 (451)
                      .|+||+++|+.   +|+++++ ++++++++....... .......  + ...+..  .+.+..+.++..++++.+.+.|+
T Consensus       223 ~s~sK~l~g~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~  299 (417)
T 3n0l_A          223 STTHKTLRGPR---GGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLM  299 (417)
T ss_dssp             EESSTTTCSCS---CEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeCccccCCCC---eeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999997764   7999998 788888876543221 1222221  1 111211  24456677788888999999998


Q ss_pred             cCCCeE
Q 013019          426 AHPKVL  431 (451)
Q Consensus       426 ~~p~V~  431 (451)
                      + .++.
T Consensus       300 ~-~g~~  304 (417)
T 3n0l_A          300 D-RKFK  304 (417)
T ss_dssp             H-TTCE
T ss_pred             h-CCce
Confidence            7 4443

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.83  E-value=1.3e-19  Score=183.40  Aligned_cols=217  Identities=15%  Similarity=0.135  Sum_probs=156.9

Q ss_pred             CCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHH-HHHHh-hh-------cC
Q 013019          207 YGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRI-FIETV-LP-------KM  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~-~l~~~-l~-------~~  273 (451)
                      |..+...+++++|+++++  .++++++++|++|+..++.++.  .+||+||+.++.|.+... .+... ..       ..
T Consensus        84 ~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~  163 (395)
T 1vef_A           84 LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL  163 (395)
T ss_dssp             SCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC
T ss_pred             cCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCC
Confidence            467889999999999995  4677888899999999998764  679999999999866432 32210 00       11


Q ss_pred             CcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCC-c-----ccc
Q 013019          274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-N-----QKA  343 (451)
Q Consensus       274 Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~-~-----~~p  343 (451)
                      ..++..++..|+++|++++++ ++++|+++.++||||.+.+    +++|.++|+++|++||+|++|+... .     ...
T Consensus       164 ~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~  242 (395)
T 1vef_A          164 VEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH  242 (395)
T ss_dssp             SSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred             CCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhh
Confidence            112555566799999999986 4999999877899999888    9999999999999999999987321 1     122


Q ss_pred             ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHH
Q 013019          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMA  421 (451)
Q Consensus       344 l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~La  421 (451)
                      ...+.|++  |++|++++ | .+.|+++++++++++++..........++..++.+...++.+..  ..++..++++.+.
T Consensus       243 ~~~~~d~~--s~sK~~~~-g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~  318 (395)
T 1vef_A          243 FGIVPDIL--TLAKALGG-G-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFM  318 (395)
T ss_dssp             HTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cCCCCCEE--EEcccccC-C-CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            23457876  78999997 4 46788888888777665421112234567766666666665542  3566677888888


Q ss_pred             HHHHcCC
Q 013019          422 EILEAHP  428 (451)
Q Consensus       422 e~L~~~p  428 (451)
                      +.|++.+
T Consensus       319 ~~l~~~~  325 (395)
T 1vef_A          319 EKLRAIP  325 (395)
T ss_dssp             HHHHTSC
T ss_pred             HHHHHhh
Confidence            8888764

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.83  E-value=1.5e-19  Score=185.71  Aligned_cols=215  Identities=12%  Similarity=0.076  Sum_probs=151.4

Q ss_pred             CCCchh-HHHHHHHHHhhhCCC-cEEEeCCH-HHHH--HHHHHHHccC------------CCeEEEcCCCCcchHHHHHH
Q 013019          206 RYGNPT-TVVVEEKMSALEGAE-STVIMASG-MSAS--TVMLLALVPA------------GGHIVTTTDCYRKTRIFIET  268 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~gae-~~vv~sSG-~aAi--~~al~all~~------------GD~VIv~~~~Y~~t~~~l~~  268 (451)
                      +|+.+. ...|++.|+++++.+ +.+++++| ++++  .+++.++.++            ||+|++++|+|.+....+  
T Consensus        71 ~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~--  148 (422)
T 3d6k_A           71 NYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT--  148 (422)
T ss_dssp             SSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH--
T ss_pred             CCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHH--
Confidence            455544 678999999999863 44555555 5776  5666777666            347999999999876443  


Q ss_pred             hhhcCCcEEEEeCC----CCHHHHHHhhcCCCeEEEE-EeCCCCCccccccHH---HHHHHHH-hcCCEEEEecCCCC--
Q 013019          269 VLPKMGITATVIDP----ADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFAT--  337 (451)
Q Consensus       269 ~l~~~Gi~v~~vd~----~D~d~Le~ai~~~~tklV~-lesPsNPtG~v~DL~---~IaelA~-~~g~~lVVD~tfa~--  337 (451)
                        +..|.++..++.    .|+++|++++++.++++|+ +++|+||||.+.+.+   +|.++|+ ++|+++|+|++|..  
T Consensus       149 --~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~  226 (422)
T 3d6k_A          149 --EHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHT  226 (422)
T ss_dssp             --HHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred             --HHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence              345777666543    4799999999764589988 789999999999866   7777787 89999999999863  


Q ss_pred             CCc----cccc--------cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH
Q 013019          338 PLN----QKAL--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT  405 (451)
Q Consensus       338 ~~~----~~pl--------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t  405 (451)
                      ...    ..++        ..+.++++.|+||+ +++| .+.|+++++++++++++......+...++..+..+...++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~  304 (422)
T 3d6k_A          227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGD  304 (422)
T ss_dssp             SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCS
T ss_pred             cCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhC
Confidence            211    1122        23567999999998 5555 57899999999999998877766656667666555544432


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHc
Q 013019          406 -------LHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       406 -------l~~Rl~~~~~nA~~Lae~L~~  426 (451)
                             +....+...++.+.+.+.|.+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~  332 (422)
T 3d6k_A          305 VAGLKAHMLKHAASLAPKFERVLEILDS  332 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   222233444566666666654

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.6e-19  Score=189.34  Aligned_cols=214  Identities=12%  Similarity=0.100  Sum_probs=157.6

Q ss_pred             HHHHHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc-----CC---CeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          213 VVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP-----AG---GHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       213 ~~Lee~LA~l~gae----~~vv~sSG~aAi~~al~all~-----~G---D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      .++.+++++++|.+    ..+++++|++|+..++.++++     +|   |+|+++.+.|.+...    .+...|+++..+
T Consensus       110 ~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~----~~~~~G~~~~~v  185 (497)
T 3mc6_A          110 SEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDK----AAYYFGMKLRHV  185 (497)
T ss_dssp             HHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHH----HHHHSCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHH----HHHHcCCeEEEE
Confidence            35566678888865    577788888999999998865     56   899999999988653    345568888887


Q ss_pred             CC------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-------------cc
Q 013019          281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-------------NQ  341 (451)
Q Consensus       281 d~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-------------~~  341 (451)
                      +.      .|+++|+++++++ +++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+.             ..
T Consensus       186 ~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~  264 (497)
T 3mc6_A          186 ELDPTTYQVDLGKVKKFINKN-TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLL  264 (497)
T ss_dssp             CBCTTTCSBCTTTTGGGCCSS-EEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCC
T ss_pred             ecCcccCcCCHHHHHHHHhhC-CEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccc
Confidence            53      3588999999875 9999999999999999999999999999999999999987321             12


Q ss_pred             ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-H-hhCCC----------cc--HHHHHHHHHhh--HH
Q 013019          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-H-VLGGA----------LN--PNAAYLIIRGM--KT  405 (451)
Q Consensus       342 ~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-~-~~G~~----------ls--~~~a~l~lrgL--~t  405 (451)
                      .....|+|+++.|++|++.++.  .+|+++.+++.+.+..... . ..+..          ..  ...+|.+++.+  ..
T Consensus       265 ~~~~~g~d~~~~s~~K~l~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~  342 (497)
T 3mc6_A          265 DFRVPGVTSISCDTHKYGFAPK--GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENG  342 (497)
T ss_dssp             STTSTTCCEEEEETTTTTCCCS--SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcEEEECchhhcCCCC--CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHH
Confidence            2334589999999999975553  3688887766544332111 1 11110          00  33355555544  34


Q ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCeEEE
Q 013019          406 LHLRVQQQNSTALRMAEILEA-HPKVLLL  433 (451)
Q Consensus       406 l~~Rl~~~~~nA~~Lae~L~~-~p~V~~V  433 (451)
                      +..++++..++++.+.+.|++ .|+++.+
T Consensus       343 ~~~~~~~~~~~~~~l~~~L~~~~~g~~~~  371 (497)
T 3mc6_A          343 YIESCQEIVGAAMKFKKYIQENIPDLDIM  371 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            566788888999999999999 5887654

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.83  E-value=2.8e-19  Score=181.78  Aligned_cols=215  Identities=13%  Similarity=0.142  Sum_probs=149.8

Q ss_pred             hhHHHHHHHHHhhh------C--CCcEEEeCCHHHHHHHHHHHHccCCC-----eEEEc-CCCCcchHHHHHH--hhhcC
Q 013019          210 PTTVVVEEKMSALE------G--AESTVIMASGMSASTVMLLALVPAGG-----HIVTT-TDCYRKTRIFIET--VLPKM  273 (451)
Q Consensus       210 pt~~~Lee~LA~l~------g--ae~~vv~sSG~aAi~~al~all~~GD-----~VIv~-~~~Y~~t~~~l~~--~l~~~  273 (451)
                      .....|+++|++++      +  .++.+++++|++|+..++.+++++||     +|+++ .|.|.+.......  .+...
T Consensus        75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~  154 (417)
T 3g7q_A           75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA  154 (417)
T ss_dssp             TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence            34667888888876      2  25777788888999999999999988     89997 8999875533211  12233


Q ss_pred             CcEEEEeCC------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc----
Q 013019          274 GITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----  340 (451)
Q Consensus       274 Gi~v~~vd~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~----  340 (451)
                      +..+..++.      .|+++|+  +++ ++++|++++|+||||.+++   +++|.++|++||+++|+|++|+.+..    
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~  231 (417)
T 3g7q_A          155 RPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIF  231 (417)
T ss_dssp             CCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBC
T ss_pred             cCcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccc
Confidence            455544432      3777777  555 4999999999999999998   88999999999999999999975321    


Q ss_pred             --cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH------HHH-HHH
Q 013019          341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHL-RVQ  411 (451)
Q Consensus       341 --~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t------l~~-Rl~  411 (451)
                        ..+...+.++++.|+||+ +++| .++|+++++++++++++......+...++..+..+...++.      +.. ..+
T Consensus       232 ~~~~~~~~~~~i~~~s~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  309 (417)
T 3g7q_A          232 SEARPLWNPNIILCMSLSKL-GLPG-SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKP  309 (417)
T ss_dssp             SCCCCCCCTTEEEEEESGGG-TCTT-SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHH
T ss_pred             cccccCCCCCEEEEEechhc-cCCC-cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHH
Confidence              112234678999999994 5555 67899999999999998877766655555555444433321      111 223


Q ss_pred             HHHHHHHHHHHHHHc-CCC
Q 013019          412 QQNSTALRMAEILEA-HPK  429 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~-~p~  429 (451)
                      +..++.+.+.+.|++ .+.
T Consensus       310 ~~~~~~~~~~~~l~~~l~~  328 (417)
T 3g7q_A          310 FYYQRVQQTIAIIRRYLSE  328 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            445666777777766 343

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.83  E-value=2.2e-19  Score=177.90  Aligned_cols=222  Identities=14%  Similarity=0.054  Sum_probs=158.8

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      |.+++...+..+++++++++++|.+  +.+++++|++|+..++.+++++||+|+++++.|.+....  ..+...|+++..
T Consensus        41 ~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~~  118 (359)
T 1svv_A           41 QHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHET--GAIEATGHKVVT  118 (359)
T ss_dssp             CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEEE
T ss_pred             ccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeEE
Confidence            5555566788999999999999863  467778888999999999999999999999999876531  024556888887


Q ss_pred             eCCC----CHHHHHHhhcCC------CeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCC---CCC---Cc
Q 013019          280 IDPA----DMEGLEAALNNN------NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF---ATP---LN  340 (451)
Q Consensus       280 vd~~----D~d~Le~ai~~~------~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tf---a~~---~~  340 (451)
                      ++..    |+++|+++++++      ++++|++++| ||||.+.+   +++|.++|+++|+++|+|+++   +.+   ..
T Consensus       119 v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~  197 (359)
T 1svv_A          119 APCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVND  197 (359)
T ss_dssp             ECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC
T ss_pred             EeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc
Confidence            7643    589999998764      2899999999 79999998   899999999999999999997   211   11


Q ss_pred             cccc--cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCC--ccHHHHHHHHHhh--HHHHHHHHHHH
Q 013019          341 QKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGM--KTLHLRVQQQN  414 (451)
Q Consensus       341 ~~pl--~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~--ls~~~a~l~lrgL--~tl~~Rl~~~~  414 (451)
                      .+.+  ..+.|+++.|++|+.+..   ..|+++.+++++++++......+..  .+......+...+  ..+....++..
T Consensus       198 ~~~~~~~~~~d~~~~s~~K~g~~~---~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  274 (359)
T 1svv_A          198 LTLADIARLTDMFYIGATKAGGMF---GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSN  274 (359)
T ss_dssp             CCHHHHHHHCSEEEEECTTTTCSS---CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHH
T ss_pred             hhhhhhhhcCCEEEEecccCCCCC---ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHH
Confidence            1211  135799999999974332   3589998988887776543222221  1111111111122  22344566777


Q ss_pred             HHHHHHHHHHHcCCCe
Q 013019          415 STALRMAEILEAHPKV  430 (451)
Q Consensus       415 ~nA~~Lae~L~~~p~V  430 (451)
                      ++++.+.+.| +.+++
T Consensus       275 ~~~~~l~~~L-~~~~~  289 (359)
T 1svv_A          275 KMAAILKAGL-EACGI  289 (359)
T ss_dssp             HHHHHHHHHH-HHTTC
T ss_pred             HHHHHHHHHh-ccCCe
Confidence            8888888888 55665

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.82  E-value=1.3e-19  Score=185.62  Aligned_cols=214  Identities=14%  Similarity=0.136  Sum_probs=141.2

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--------cCCCeEEEcCCCCcch-------------HHHH
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKT-------------RIFI  266 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all--------~~GD~VIv~~~~Y~~t-------------~~~l  266 (451)
                      +...+++++|++++|.  ++.+++++|++|+..++.+++        ++||+|++..|.|.+.             ...+
T Consensus        61 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~  140 (432)
T 3a9z_A           61 DIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL  140 (432)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHH
Confidence            4457899999999997  356666677899999998886        5898888877777542             2223


Q ss_pred             HHhhhcCCcEEEEeCC------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcC----------CEEE
Q 013019          267 ETVLPKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG----------AIVC  330 (451)
Q Consensus       267 ~~~l~~~Gi~v~~vd~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g----------~~lV  330 (451)
                      .......|.++..++.      .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++|          +++|
T Consensus       141 ~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~-~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~li  219 (432)
T 3a9z_A          141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPT-TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVH  219 (432)
T ss_dssp             HHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTT-EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             HHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCC-ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEE
Confidence            3334556888888764      3789999999874 999999999999999999999999999999          9999


Q ss_pred             EecCCCCCCcc-ccccCCCcEEEECCcccCCccccceeEEEEeCHHH-HHHHHHH-------hHhhCCCccHHHHHHHHH
Q 013019          331 IDGTFATPLNQ-KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNL-------HHVLGGALNPNAAYLIIR  401 (451)
Q Consensus       331 VD~tfa~~~~~-~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el-i~~lr~~-------~~~~G~~ls~~~a~l~lr  401 (451)
                      +|++|+.+... .....+.|+++.|+||+++ +   ++|++++++++ ..+++..       ......+.+....+.+..
T Consensus       220 vDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a  295 (432)
T 3a9z_A          220 TDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P---RIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGK  295 (432)
T ss_dssp             EECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C---SCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHH
T ss_pred             EEchhhhCCcccChhhcCCCEEEEehhHhcC-C---cceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHH
Confidence            99998765321 2123578999999999874 4   27899888754 2222211       111112344444443333


Q ss_pred             hhHH----HHHHHHHHHHHHHHHHHHHHcCC
Q 013019          402 GMKT----LHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       402 gL~t----l~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      .++.    +....++..++++.+.+.|++.+
T Consensus       296 al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  326 (432)
T 3a9z_A          296 AADLVSENCETYEAHMRDIRDYLEERLEAEF  326 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4433    33345556677777878777643

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.82  E-value=5.7e-19  Score=186.77  Aligned_cols=215  Identities=15%  Similarity=0.024  Sum_probs=158.7

Q ss_pred             HHHHHHHhhhCCC-------cEEEeCCHHHHHHHHHHHHccC--------CC-----eEEEcCCCCcchHHHHHHhhhcC
Q 013019          214 VVEEKMSALEGAE-------STVIMASGMSASTVMLLALVPA--------GG-----HIVTTTDCYRKTRIFIETVLPKM  273 (451)
Q Consensus       214 ~Lee~LA~l~gae-------~~vv~sSG~aAi~~al~all~~--------GD-----~VIv~~~~Y~~t~~~l~~~l~~~  273 (451)
                      +++++|++++|.+       .++++++|++|+..+++++..+        ||     +|+++.+.|....    ..+...
T Consensus        99 ~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~----~~~~~~  174 (502)
T 3hbx_A           99 RCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE----KFARYF  174 (502)
T ss_dssp             HHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH----HHHHHT
T ss_pred             HHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH----HHHHHc
Confidence            4556688888876       4556889999999998887665        87     8999999988754    345567


Q ss_pred             CcEEEEeCC------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc------CCEEEEecCCCCCC--
Q 013019          274 GITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPL--  339 (451)
Q Consensus       274 Gi~v~~vd~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~------g~~lVVD~tfa~~~--  339 (451)
                      |+++++++.      .|+++|+++++++ +++|++++|+||||.+.|+++|.++|+++      |+++++|++|+.+.  
T Consensus       175 G~~~~~v~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p  253 (502)
T 3hbx_A          175 EVELKEVKLSEGYYVMDPQQAVDMVDEN-TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAP  253 (502)
T ss_dssp             TCEEEEECCBTTBCSCCHHHHHHHCCTT-EEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred             CceeEEEecCCCcCcCCHHHHHHHHhhC-CEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhh
Confidence            888888763      2899999999885 99999999999999999999999999999      99999999987432  


Q ss_pred             -ccccc-----cCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHH-HhHhhCCC------------ccHHHHHHH
Q 013019          340 -NQKAL-----SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRN-LHHVLGGA------------LNPNAAYLI  399 (451)
Q Consensus       340 -~~~pl-----~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~-~~~~~G~~------------ls~~~a~l~  399 (451)
                       .....     ..++|++..|++|++.++.  .+|+++. +++++..... ...+++..            ......|.+
T Consensus       254 ~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~--g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~a  331 (502)
T 3hbx_A          254 FLYPELEWDFRLPLVKSINVSGHKYGLVYA--GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQ  331 (502)
T ss_dssp             HHCTTCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHH
T ss_pred             hhCcccccccCCCCceEEEECcccccCCCC--CeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHH
Confidence             11111     2378999999999997665  2465554 4544422111 11122211            123445555


Q ss_pred             HH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEec
Q 013019          400 IR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFI  435 (451)
Q Consensus       400 lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~y  435 (451)
                      ++  +.+.+..+++++.++++.+++.|+++++++.+..
T Consensus       332 l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~  369 (502)
T 3hbx_A          332 LIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK  369 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            54  4567788899999999999999999998866543

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.82  E-value=2.7e-19  Score=187.46  Aligned_cols=213  Identities=19%  Similarity=0.212  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHHHH----ccCCC-----eEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          211 TTVVVEEKMSALEGAESTVIM-ASGMSASTVMLLAL----VPAGG-----HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       211 t~~~Lee~LA~l~gae~~vv~-sSG~aAi~~al~al----l~~GD-----~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ...++++++++++|.+..+++ ++|++|+.++++++    .++||     +|+++++.|+.+...    +...|+++..+
T Consensus       108 l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~----~~~~G~~vv~v  183 (474)
T 1wyu_B          108 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPAT----ASMAGYQVREI  183 (474)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHH----HHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHH----HHHCCCEEEEe
Confidence            367789999999998766655 67778888766554    36888     999999999876643    45678888888


Q ss_pred             CCC-----CHHHHHHhhcCCCeEEEEEeCCCCCcccc-ccHHHHHHHHHhcCCEEEEecCCCCCC--ccccccCCCcEEE
Q 013019          281 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVL  352 (451)
Q Consensus       281 d~~-----D~d~Le~ai~~~~tklV~lesPsNPtG~v-~DL~~IaelA~~~g~~lVVD~tfa~~~--~~~pl~~GaDiVv  352 (451)
                      +..     |+++|+++++++ +++|++++| ||+|.+ .++++|.++|+++|+++|+|++++.+.  ..++..+|+|+++
T Consensus       184 ~~~~~~~~d~~~L~~~i~~~-t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~  261 (474)
T 1wyu_B          184 PSGPEGEVDLEALKRELGPH-VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVH  261 (474)
T ss_dssp             CBCTTSSBCHHHHHHHCSTT-EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEE
T ss_pred             cCCCCCCcCHHHHHHhhCCC-ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEE
Confidence            753     899999999874 999999998 689998 699999999999999999999986443  2344566899999


Q ss_pred             ECCcccCCcc---ccceeEEEEeCHHHHHHHHH-Hh------------------HhhCCCccHHH---HHHHHH--hhHH
Q 013019          353 HSATKFIGGH---NDVLAGSISGSGKLVTQIRN-LH------------------HVLGGALNPNA---AYLIIR--GMKT  405 (451)
Q Consensus       353 ~S~SK~l~G~---gdv~gG~Iv~~~eli~~lr~-~~------------------~~~G~~ls~~~---a~l~lr--gL~t  405 (451)
                      .|+||+++++   |...+|++++++++++++.. ..                  .......+...   ++..++  +.+.
T Consensus       262 ~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~  341 (474)
T 1wyu_B          262 LNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEG  341 (474)
T ss_dssp             CCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHH
Confidence            9999999855   22457999999887766541 00                  00001123322   222222  3445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          406 LHLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       406 l~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      +....++..++++.+.+.|++. ++
T Consensus       342 l~~~~~~~~~~~~~l~~~L~~~-g~  365 (474)
T 1wyu_B          342 LKKAAALAVLNARYLKELLKEK-GY  365 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-Cc
Confidence            6666777888999999999886 54

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.82  E-value=1.1e-18  Score=177.64  Aligned_cols=215  Identities=14%  Similarity=0.102  Sum_probs=150.8

Q ss_pred             chhHHHHHHHHHhhh-C-------CCcEEE--eCCHHHHHHHHH--HHHccCC-----CeEEEcCCCCcchHHHHHHhhh
Q 013019          209 NPTTVVVEEKMSALE-G-------AESTVI--MASGMSASTVML--LALVPAG-----GHIVTTTDCYRKTRIFIETVLP  271 (451)
Q Consensus       209 npt~~~Lee~LA~l~-g-------ae~~vv--~sSG~aAi~~al--~all~~G-----D~VIv~~~~Y~~t~~~l~~~l~  271 (451)
                      .+....|+++|++++ +       .++.++  +++|++|+..++  ..++.+|     |+|+++.+.|.+....    +.
T Consensus        73 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~----~~  148 (412)
T 1ajs_A           73 ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGV----FT  148 (412)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHH----HH
T ss_pred             CCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHH----HH
Confidence            344678999999887 4       256776  777889999885  3556899     9999999999986543    34


Q ss_pred             cCCcE-EEEeCC-------CCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCC
Q 013019          272 KMGIT-ATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP  338 (451)
Q Consensus       272 ~~Gi~-v~~vd~-------~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~  338 (451)
                      ..|.+ +..++.       .|+++|++++++  .++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|...
T Consensus       149 ~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~  228 (412)
T 1ajs_A          149 TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGF  228 (412)
T ss_dssp             HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTT
T ss_pred             HcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence            45666 665543       278999998864  14789999999999999865   678999999999999999997654


Q ss_pred             Ccc----c--ccc----C-CCcEEEECCcccCCccccceeEEEEe---CHHH----HHHHHHHhHhhCCCccHHHHHHHH
Q 013019          339 LNQ----K--ALS----L-GADLVLHSATKFIGGHNDVLAGSISG---SGKL----VTQIRNLHHVLGGALNPNAAYLII  400 (451)
Q Consensus       339 ~~~----~--pl~----~-GaDiVv~S~SK~l~G~gdv~gG~Iv~---~~el----i~~lr~~~~~~G~~ls~~~a~l~l  400 (451)
                      ...    .  ++.    . ..++++.|+||.++++| .+.|++++   ++++    ++.++..........++..++.+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  307 (412)
T 1ajs_A          229 ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVA  307 (412)
T ss_dssp             TTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHH
T ss_pred             cCCcccccchHHHHHhccCCcEEEEEecccccCCCC-cceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHH
Confidence            221    1  121    1 23488999999999876 56788888   8874    444444332222233444444444


Q ss_pred             HhhH----------HHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          401 RGMK----------TLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       401 rgL~----------tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      ..|+          .+....++..++.+.+.+.|++++
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1ajs_A          308 RTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3333          334455666778888888998764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.82  E-value=7.1e-19  Score=181.84  Aligned_cols=210  Identities=19%  Similarity=0.202  Sum_probs=153.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCC-cchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY-RKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y-~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      .++...+|+++|+++++.++++++++|++|+..++.+++++||  +++.+.| +.+..    .+...|.++..++.    
T Consensus        73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~----~~~~~G~~~~~v~~~~~~  146 (456)
T 2ez2_A           73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRY----HQEKNGAVFVDIVRDEAH  146 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHH----HHHHTTCEEEECBCGGGG
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHH----HHHHcCCEEEEecccccc
Confidence            4678899999999999999999999999999999999999999  7778888 54343    34456777776532    


Q ss_pred             -----------CCHHHHHHhhcCCC---eEEEEEeCCCC-Ccccccc---HHHHHHHHHhcCCEEEEecCCCCC------
Q 013019          283 -----------ADMEGLEAALNNNN---VSLFFTESPTN-PFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP------  338 (451)
Q Consensus       283 -----------~D~d~Le~ai~~~~---tklV~lesPsN-PtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~------  338 (451)
                                 .|+++|+++++++.   +++|++++|+| |+|.+.+   +++|.++|++||++||+|++++.+      
T Consensus       147 ~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~  226 (456)
T 2ez2_A          147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIK  226 (456)
T ss_dssp             CTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccc
Confidence                       27899999997531   39999999999 9999887   999999999999999999997642      


Q ss_pred             -----Ccccc-------ccCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhh-C----CCcc--HHHHHH
Q 013019          339 -----LNQKA-------LSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL-G----GALN--PNAAYL  398 (451)
Q Consensus       339 -----~~~~p-------l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~-G----~~ls--~~~a~l  398 (451)
                           +...+       .....|+++.|++|+++ .+  ++|++++ +++++++++..+... |    ...+  ...+ +
T Consensus       227 ~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~  302 (456)
T 2ez2_A          227 EQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN--IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEA-M  302 (456)
T ss_dssp             HHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHH-H
T ss_pred             ccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC--ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHH-H
Confidence                 22222       12346888889888865 33  4899998 688888887655432 1    1122  2222 1


Q ss_pred             HHHhhHHH-HHHHHHHHHHHHHHHHHHHcC
Q 013019          399 IIRGMKTL-HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       399 ~lrgL~tl-~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +...++.+ ...+++..++++.+.+.|++.
T Consensus       303 a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          303 AIGLREAMQYEYIEHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            22222333 345566667778888888763

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.82  E-value=4.2e-19  Score=182.29  Aligned_cols=212  Identities=11%  Similarity=0.119  Sum_probs=145.5

Q ss_pred             hhHHHHHHHHHhhh----CC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCC---------
Q 013019          210 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG---------  274 (451)
Q Consensus       210 pt~~~Lee~LA~l~----ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~G---------  274 (451)
                      +...+|+++|++++    +.  ++.++++++++++.. +.+++++||+|++++|.|.+....+.. ....+         
T Consensus        98 ~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~  175 (432)
T 3ei9_A           98 QGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKY  175 (432)
T ss_dssp             TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEE
T ss_pred             CCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHH-cCCccccccccccc
Confidence            44578999999885    43  345555555578776 578889999999999999987665532 22222         


Q ss_pred             cEEEEeCCCCH----HHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----cc
Q 013019          275 ITATVIDPADM----EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA  343 (451)
Q Consensus       275 i~v~~vd~~D~----d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~p  343 (451)
                      .++.+++..+.    .++++  .+ ++++|++++|+||||.+.+   +++|+++|+++|++||+|++|+.....    ..
T Consensus       176 ~~~~~~~~~~~~~~~~~l~~--~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~  252 (432)
T 3ei9_A          176 GNIEYMRCTPENGFFPDLST--VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSI  252 (432)
T ss_dssp             TTCEEEECCGGGTTSCCGGG--CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSG
T ss_pred             CceEEeccCcccCCcCChhh--CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCCh
Confidence            13334332211    12222  13 4899999999999999985   677788899999999999998743211    11


Q ss_pred             cc----CCCcEEEECCcccCCccccceeEEEEeCHHH--------HHHHHHHhHhhCCCccHHHHHHHHH-----hhHHH
Q 013019          344 LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKL--------VTQIRNLHHVLGGALNPNAAYLIIR-----GMKTL  406 (451)
Q Consensus       344 l~----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~el--------i~~lr~~~~~~G~~ls~~~a~l~lr-----gL~tl  406 (451)
                      ..    .+.++++.|+||.++.+| .+.|++++++++        ++.+...........++.....+..     +.+.+
T Consensus       253 ~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  331 (432)
T 3ei9_A          253 FEIPGAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAM  331 (432)
T ss_dssp             GGSTTGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHH
T ss_pred             hhcCCCCCeEEEEecchhccCCcc-cceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHH
Confidence            11    245799999999998666 568999998877        6777766554444455555443333     33456


Q ss_pred             HHHHHHHHHHHHHHHHHHHcC
Q 013019          407 HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ....++..++.+.+.+.|+++
T Consensus       332 ~~~~~~~~~~~~~l~~~L~~~  352 (432)
T 3ei9_A          332 HKVIGFYKENTNIIIDTFTSL  352 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            666778888999999999886

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.82  E-value=9.7e-19  Score=178.30  Aligned_cols=215  Identities=17%  Similarity=0.160  Sum_probs=149.5

Q ss_pred             chhHHHHHHHHHhhh-CCC-------cE--EEeCCHHHHHHHH---HHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          209 NPTTVVVEEKMSALE-GAE-------ST--VIMASGMSASTVM---LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       209 npt~~~Lee~LA~l~-gae-------~~--vv~sSG~aAi~~a---l~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      .+...+|++.+++++ |.+       +.  +.+.+|++++..+   +.+++++||+|++++|.|.+....    ++..|.
T Consensus        78 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~  153 (409)
T 4eu1_A           78 VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESI----FAKAGM  153 (409)
T ss_dssp             TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHH----HHHTTC
T ss_pred             CCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHH----HHHcCC
Confidence            344567888998865 432       23  3366777777654   345678999999999999987644    445688


Q ss_pred             EEEEeCC-------CCHHHHHHhhc--CCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc-
Q 013019          276 TATVIDP-------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-  342 (451)
Q Consensus       276 ~v~~vd~-------~D~d~Le~ai~--~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~-  342 (451)
                      ++..++.       .|+++|+++++  +++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|....... 
T Consensus       154 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~  233 (409)
T 4eu1_A          154 ELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQL  233 (409)
T ss_dssp             EEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCH
T ss_pred             eEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCc
Confidence            8777753       27899999986  224678888999999999987   5569999999999999999987643221 


Q ss_pred             -----cc----cC-CCcEEEECCcccCCccccceeEEE---EeCHH----HHHHHHHHhHhhCCCccHHHHHHHHHhhH-
Q 013019          343 -----AL----SL-GADLVLHSATKFIGGHNDVLAGSI---SGSGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK-  404 (451)
Q Consensus       343 -----pl----~~-GaDiVv~S~SK~l~G~gdv~gG~I---v~~~e----li~~lr~~~~~~G~~ls~~~a~l~lrgL~-  404 (451)
                           ++    .. ...+++.|+||.++.+| .+.|++   +++++    ++++++..........+...++.+...++ 
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  312 (409)
T 4eu1_A          234 DYDAFVPRHLVDMVPNLIVAQSFSKNFGLYG-HRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKD  312 (409)
T ss_dssp             HHHTHHHHHHHTTSSCCEEEEECTTTSSCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHhhCCcEEEEecCcccccCcc-CCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCC
Confidence                 11    11 23488999999998776 456774   66777    55666655443334445555554443333 


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          405 ---------TLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       405 ---------tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                               .+....++..++.+.+.+.|++.+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  345 (409)
T 4eu1_A          313 PQLTALWKKELKQMSSRIAEVRKRLVSELKACG  345 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                     244456677788888999998764

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.82  E-value=3.5e-19  Score=184.92  Aligned_cols=214  Identities=13%  Similarity=-0.023  Sum_probs=155.6

Q ss_pred             HHHHHHHHHhhhCCC--c-----EEEeCCHHHHHHHHHHHHcc--------CC-----CeEEEcCCCCcchHHHHHHhhh
Q 013019          212 TVVVEEKMSALEGAE--S-----TVIMASGMSASTVMLLALVP--------AG-----GHIVTTTDCYRKTRIFIETVLP  271 (451)
Q Consensus       212 ~~~Lee~LA~l~gae--~-----~vv~sSG~aAi~~al~all~--------~G-----D~VIv~~~~Y~~t~~~l~~~l~  271 (451)
                      .+++++++++++|.+  .     ++++++|++|+..++.++..        +|     ++|++++ .|....    ..+.
T Consensus        83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~----~~~~  157 (452)
T 2dgk_A           83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH----KFAR  157 (452)
T ss_dssp             HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH----HHHH
T ss_pred             HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH----HHHH
Confidence            345666678899874  2     67888889999999888764        55     5899988 776544    3445


Q ss_pred             cCCcEEEEeCCC------CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc------CCEEEEecCCCCCC
Q 013019          272 KMGITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPL  339 (451)
Q Consensus       272 ~~Gi~v~~vd~~------D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~------g~~lVVD~tfa~~~  339 (451)
                      ..|++++.++..      |+++|+++|+++ |++|++++|+||||.+.|+++|.++|+++      |+++++|++|+.+.
T Consensus       158 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~  236 (452)
T 2dgk_A          158 YWDVELREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL  236 (452)
T ss_dssp             HTTCEEEECCCBTTBCSCCHHHHHHHCCTT-EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred             HcCceEEEEecCCCCCeECHHHHHHHHhhC-CEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHH
Confidence            678898888642      799999999875 99999999999999999999999999995      99999999987643


Q ss_pred             c---cc--ccc---CCCcEEEECCcccCCccccceeEEEEeCH-HHH-HHHHHHhHhhCC----------Cc--cHHHHH
Q 013019          340 N---QK--ALS---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLV-TQIRNLHHVLGG----------AL--NPNAAY  397 (451)
Q Consensus       340 ~---~~--pl~---~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli-~~lr~~~~~~G~----------~l--s~~~a~  397 (451)
                      .   ..  +..   .++|+++.|++|++.++.  .+|+++.++ +++ +.+......++.          ..  .....|
T Consensus       237 ~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  314 (452)
T 2dgk_A          237 APFVAPDIVWDFRLPRVKSISASGHKFGLAPL--GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQY  314 (452)
T ss_dssp             HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHH
T ss_pred             HHhhCccchhhcCCCCCcEEEECcccccCCCC--CeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHH
Confidence            1   11  122   278999999999886554  478888754 333 333211111111          11  233445


Q ss_pred             HHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          398 LIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       398 l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      .+++  +.+.+..++++..++++.+.+.|+++++++.+
T Consensus       315 aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  352 (452)
T 2dgk_A          315 YEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI  352 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe
Confidence            5544  34567777888999999999999999887554

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.82  E-value=2.5e-18  Score=176.33  Aligned_cols=211  Identities=13%  Similarity=0.092  Sum_probs=143.7

Q ss_pred             HHHHHHHHHhhhC--------CC--cEEEeCCHHHHHHHH--HHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEE
Q 013019          212 TVVVEEKMSALEG--------AE--STVIMASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV  279 (451)
Q Consensus       212 ~~~Lee~LA~l~g--------ae--~~vv~sSG~aAi~~a--l~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~  279 (451)
                      ...|++.++++++        .+  +.+++++|++|+..+  +.+++++||+|++++|.|.+....    +...|.++..
T Consensus        94 ~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~~~  169 (420)
T 4f4e_A           94 IAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRAL----FDMAGFEVVA  169 (420)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHH----HHHTTCCEEE
T ss_pred             cHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHH----HHHcCCeEEE
Confidence            4556666666542        23  445556666999988  557789999999999999886543    3456777666


Q ss_pred             eCC----C---CHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----c
Q 013019          280 IDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----K  342 (451)
Q Consensus       280 vd~----~---D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~  342 (451)
                      ++.    .   |+++|++++++  .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......     .
T Consensus       170 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~  249 (420)
T 4f4e_A          170 YPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAA  249 (420)
T ss_dssp             EECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGH
T ss_pred             eeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhH
Confidence            654    2   79999999972  24899999999999999965   678999999999999999998654321     1


Q ss_pred             c-----ccCCCcEEEECCcccCCccccceeEEEEe---CHHHHHHHH----HHhHhhCCCccHHHHHHHHHhh-------
Q 013019          343 A-----LSLGADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIR----NLHHVLGGALNPNAAYLIIRGM-------  403 (451)
Q Consensus       343 p-----l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~---~~eli~~lr----~~~~~~G~~ls~~~a~l~lrgL-------  403 (451)
                      +     ...+.++++.|+||.++.+| .+.|+++.   ++++++++.    ..........+...++.+...+       
T Consensus       250 ~~~~~~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  328 (420)
T 4f4e_A          250 AVRLFAAANLNVFVSSSFSKSFSLYG-ERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRA  328 (420)
T ss_dssp             HHHHHHHTTCCEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhcCCCEEEEEeCCccCcCcC-CCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHH
Confidence            1     12356799999999998766 45677643   566665532    2222222223333333322211       


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          404 ---KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       404 ---~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                         +.+....++..++.+.+.+.|+++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          329 SWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               234555667778888899999876

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.82  E-value=2.1e-18  Score=174.28  Aligned_cols=213  Identities=12%  Similarity=0.060  Sum_probs=145.8

Q ss_pred             hHHHHHHHHHhhhCC--------C--cEEEeCCHHHHHHHH--HHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          211 TTVVVEEKMSALEGA--------E--STVIMASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       211 t~~~Lee~LA~l~ga--------e--~~vv~sSG~aAi~~a--l~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      ....|++.++++++.        +  +.+++++|++|+..+  +.+++++||+|+++.|.|.+....    +...|.++.
T Consensus        71 g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~  146 (397)
T 3fsl_A           71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAI----FAGAGFEVS  146 (397)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHH----HHHTTCCEE
T ss_pred             chHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHH----HHHcCCceE
Confidence            345677777776532        3  445556666999888  456789999999999999886543    445677777


Q ss_pred             EeCC----C---CHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----
Q 013019          279 VIDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (451)
Q Consensus       279 ~vd~----~---D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----  341 (451)
                      .++.    .   |+++|++++++  .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......     
T Consensus       147 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~  226 (397)
T 3fsl_A          147 TYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDA  226 (397)
T ss_dssp             EECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGG
T ss_pred             EEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCccccc
Confidence            7765    2   79999999973  24899999999999999965   568999999999999999998754321     


Q ss_pred             ccc-----cCCCcEEEECCcccCCccccceeEEEEe---CHHHHHHHHHH-hH---hhCCCccHHHHHHH---HHh----
Q 013019          342 KAL-----SLGADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNL-HH---VLGGALNPNAAYLI---IRG----  402 (451)
Q Consensus       342 ~pl-----~~GaDiVv~S~SK~l~G~gdv~gG~Iv~---~~eli~~lr~~-~~---~~G~~ls~~~a~l~---lrg----  402 (451)
                      .++     ..+.++++.|+||.++.+| .+.|++++   ++++++++... ..   ......+...+..+   +..    
T Consensus       227 ~~~~~~~~~~~~~i~~~S~SK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  305 (397)
T 3fsl_A          227 YAIRAIASAGLPALVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALK  305 (397)
T ss_dssp             HHHHHHHHTTCCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHhcCCCEEEEecccccccCcC-CCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHH
Confidence            111     2345689999999998665 46787763   56666554322 11   11122233332222   211    


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          403 ---MKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       403 ---L~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                         .+.+..+.++..++.+.+.+.|++++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  334 (397)
T 3fsl_A          306 ASWLKEVEEMRTRILAMRQELVKVLSTEM  334 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               23355556777788888999998764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.81  E-value=1.8e-18  Score=174.65  Aligned_cols=215  Identities=13%  Similarity=0.076  Sum_probs=149.6

Q ss_pred             chhHHHHHHHHHhhh---C-----CCcEEE--eCCHHHHHHHHHHHH--ccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          209 NPTTVVVEEKMSALE---G-----AESTVI--MASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       209 npt~~~Lee~LA~l~---g-----ae~~vv--~sSG~aAi~~al~al--l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      .+....|+++|++++   +     .++.++  +++|++|+..++..+  +.+||+|++++|.|.+....    +...|.+
T Consensus        68 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~  143 (396)
T 2q7w_A           68 IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSV----FNSAGLE  143 (396)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHH----HHHTTCE
T ss_pred             CCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHH----HHHcCCc
Confidence            344678888888887   2     345555  677779999988665  46999999999999986543    3456777


Q ss_pred             EEEeCC---C----CHHHHHHhhcCC--CeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc---
Q 013019          277 ATVIDP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---  341 (451)
Q Consensus       277 v~~vd~---~----D~d~Le~ai~~~--~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~---  341 (451)
                      +..++.   .    |+++|++++++.  +++++++++|+||||.+.+   +++|.++|+++|+++|+|++|......   
T Consensus       144 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~  223 (396)
T 2q7w_A          144 VREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEE  223 (396)
T ss_dssp             EEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHH
T ss_pred             eEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccc
Confidence            776654   2    799999999752  3788999999999999875   668999999999999999998764321   


Q ss_pred             c--ccc----C-CCcEEEECCcccCCccccceeEEEEe---CHH----HHHHHHHHhHhhCCCccHHHHHHHHHhhH---
Q 013019          342 K--ALS----L-GADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK---  404 (451)
Q Consensus       342 ~--pl~----~-GaDiVv~S~SK~l~G~gdv~gG~Iv~---~~e----li~~lr~~~~~~G~~ls~~~a~l~lrgL~---  404 (451)
                      .  ++.    . ..++++.|+||.++.+| .+.|++++   +++    +++.+...........++..++.+...|+   
T Consensus       224 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  302 (396)
T 2q7w_A          224 DAEGLRAFAAMHKELIVASSYSXNFGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDA  302 (396)
T ss_dssp             HTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred             hhHHHHHHHhcCCcEEEEEeccccccccc-cccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChh
Confidence            1  111    1 24688999999998666 46788876   564    44444443322223345665555444443   


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          405 -------TLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       405 -------tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                             .+....++..++.+.+.+.|++++
T Consensus       303 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          303 LRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                   233334556677888888888764

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.81  E-value=1.3e-18  Score=177.26  Aligned_cols=214  Identities=11%  Similarity=0.082  Sum_probs=148.3

Q ss_pred             hhHHHHHHHHHhhh-C-------CCcEEE--eCCHHHHHHHH--HHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEE
Q 013019          210 PTTVVVEEKMSALE-G-------AESTVI--MASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA  277 (451)
Q Consensus       210 pt~~~Lee~LA~l~-g-------ae~~vv--~sSG~aAi~~a--l~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v  277 (451)
                      +....|++.+++++ +       .++.++  +++|++|+..+  +..++.+||+|++++|.|.+....    +...|.++
T Consensus        73 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~  148 (412)
T 1yaa_A           73 TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAI----FENQGLKT  148 (412)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHH----HHTTTCCE
T ss_pred             CCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHH----HHHcCceE
Confidence            34567888888877 3       356666  67777999887  345567999999999999986643    34557776


Q ss_pred             EEeCC-------CCHHHHHHhhcCC--CeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----
Q 013019          278 TVIDP-------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----  341 (451)
Q Consensus       278 ~~vd~-------~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----  341 (451)
                      ..++.       .|+++|++++++.  ++.++++++|+||||.+.+   +++|.++|+++|+++|+|++|......    
T Consensus       149 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~  228 (412)
T 1yaa_A          149 ATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDK  228 (412)
T ss_dssp             EEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHH
T ss_pred             EEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccc
Confidence            66543       3789999988653  2456666999999999975   678899999999999999998653221    


Q ss_pred             c--cc----cCC----CcEEEECCcccCCccccceeEEEE--e-----CHH----HHHHHHHHhHhhCCCccHHHHHHHH
Q 013019          342 K--AL----SLG----ADLVLHSATKFIGGHNDVLAGSIS--G-----SGK----LVTQIRNLHHVLGGALNPNAAYLII  400 (451)
Q Consensus       342 ~--pl----~~G----aDiVv~S~SK~l~G~gdv~gG~Iv--~-----~~e----li~~lr~~~~~~G~~ls~~~a~l~l  400 (451)
                      .  ++    ..+    .++++.|+||.++++| .+.|+++  +     +++    ++++++..........+......+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~  307 (412)
T 1yaa_A          229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVA  307 (412)
T ss_dssp             HTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             hhHHHHHHHhcCCCCcceEEEeccCCCCCCcC-CcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHH
Confidence            1  22    123    4688999999998766 5678887  6     566    6777766433333333555544444


Q ss_pred             HhhH----------HHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          401 RGMK----------TLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       401 rgL~----------tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      ..|+          .+....++..++.+.+.+.|++++
T Consensus       308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1yaa_A          308 KLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG  345 (412)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3332          344445666677888888888764

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.81  E-value=5.1e-19  Score=179.05  Aligned_cols=216  Identities=19%  Similarity=0.155  Sum_probs=154.3

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc--EEEEe
Q 013019          208 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI  280 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~~-vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi--~v~~v  280 (451)
                      +++....++    +++++++|.+.. +++++|++|+..++.+++++||+|+++++.|+++.... ..+...|.  ....+
T Consensus        63 g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~  141 (407)
T 2dkj_A           63 GCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSY  141 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEec
Confidence            566555555    489999998665 66799999999999999999999999999998763100 11122222  33333


Q ss_pred             --C----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-----ccccccCCCc
Q 013019          281 --D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGAD  349 (451)
Q Consensus       281 --d----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-----~~~pl~~GaD  349 (451)
                        +    ..|+++|++++++.++++|++++|+||  .+.|+++|.++|+++|+++|+|++|+.+.     ...++. ..|
T Consensus       142 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~d  218 (407)
T 2dkj_A          142 GVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAH  218 (407)
T ss_dssp             CCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCS
T ss_pred             CCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-ccc
Confidence              2    247999999997424899999999997  67799999999999999999999986521     111222 379


Q ss_pred             EEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhC-CCccHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHH
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGM-----KTLHLRVQQQNSTALRMAE  422 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G-~~ls~~~a~l~lrgL-----~tl~~Rl~~~~~nA~~Lae  422 (451)
                      +++.|++|+++|+.   +|+++++ ++++++++.....+. ...++.....+...+     +.+....++..++++.+.+
T Consensus       219 i~~~s~sK~l~g~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  295 (407)
T 2dkj_A          219 VVTSTTHKTLRGPR---GGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAE  295 (407)
T ss_dssp             EEEEESSGGGCCCS---CEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCCCCC---ceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            99999999998764   7999999 799888877654332 233342222222222     3445667778888999999


Q ss_pred             HHHcCCCeE
Q 013019          423 ILEAHPKVL  431 (451)
Q Consensus       423 ~L~~~p~V~  431 (451)
                      .|+++ ++.
T Consensus       296 ~L~~~-g~~  303 (407)
T 2dkj_A          296 ELARR-GYR  303 (407)
T ss_dssp             HHHHT-TCE
T ss_pred             HHHhC-Cce
Confidence            99887 553

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.81  E-value=6e-19  Score=183.45  Aligned_cols=216  Identities=10%  Similarity=0.093  Sum_probs=155.1

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCe---EEEcCCCCcchHHHHHHhhhcCCcEE-----EE
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGH---IVTTTDCYRKTRIFIETVLPKMGITA-----TV  279 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~~GD~---VIv~~~~Y~~t~~~l~~~l~~~Gi~v-----~~  279 (451)
                      +..+.+++++++++|++  +.++++++++++..++.+++++||.   |+++.+.|.+....+...++..|+++     .+
T Consensus       111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~  190 (465)
T 3e9k_A          111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI  190 (465)
T ss_dssp             GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred             HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence            44577999999999973  5666677779999999999877665   99999999987665655566667653     33


Q ss_pred             eCC-----CCHHHHHHhhcC--CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc-ccccCCCcEE
Q 013019          280 IDP-----ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-KALSLGADLV  351 (451)
Q Consensus       280 vd~-----~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~-~pl~~GaDiV  351 (451)
                      .+.     .|+++|+++|++  .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+... ...++++|++
T Consensus       191 ~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~  270 (465)
T 3e9k_A          191 KPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFA  270 (465)
T ss_dssp             CCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEE
T ss_pred             ecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEE
Confidence            321     379999999962  24999999999999999999999999999999999999998876432 2234689999


Q ss_pred             EECCcccCC-ccccceeEEEEeCHHHHHHHHHHhH-------------------------hhCCCccHHHHHHHHHhhHH
Q 013019          352 LHSATKFIG-GHNDVLAGSISGSGKLVTQIRNLHH-------------------------VLGGALNPNAAYLIIRGMKT  405 (451)
Q Consensus       352 v~S~SK~l~-G~gdv~gG~Iv~~~eli~~lr~~~~-------------------------~~G~~ls~~~a~l~lrgL~t  405 (451)
                      +.|++|+++ |++  ..|+++.++++++++.....                         ...++.+......+..+++.
T Consensus       271 ~~s~~K~l~~gp~--~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~  348 (465)
T 3e9k_A          271 CWCSYKYLNAGAG--GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI  348 (465)
T ss_dssp             EECSSSTTCCCTT--CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred             EECcccccccCCC--ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH
Confidence            999999995 554  34777888877654431100                         00113344444433334433


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHcC
Q 013019          406 -----LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       406 -----l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                           +....++..+++..+.+.|+++
T Consensus       349 ~~~~~~~~~~~~~~~~~~~l~~~L~~~  375 (465)
T 3e9k_A          349 FKQATMKALRKKSVLLTGYLEYLIKHN  375 (465)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence                 3334455666777788888774

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.81  E-value=3e-19  Score=188.87  Aligned_cols=217  Identities=16%  Similarity=0.124  Sum_probs=139.5

Q ss_pred             CchhHHHHH----HHHHhhhCCCc----EEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHH--HH-H-HhhhcCC
Q 013019          208 GNPTTVVVE----EKMSALEGAES----TVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRI--FI-E-TVLPKMG  274 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~----~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~--~l-~-~~l~~~G  274 (451)
                      |+++.++||    +++++++|.+.    +.+ ++||++|+..++.+++++||+|++.++.|++...  .+ . ..+...|
T Consensus        94 G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g  173 (490)
T 2a7v_A           94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  173 (490)
T ss_dssp             ----CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcC
Confidence            566667777    89999999875    444 4699999999999999999999999999976431  10 0 0111223


Q ss_pred             c--EEEEe--C----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCC-----CCcc
Q 013019          275 I--TATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-----PLNQ  341 (451)
Q Consensus       275 i--~v~~v--d----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~-----~~~~  341 (451)
                      .  .+..+  +    ..|+++|++++++.++++|+++.++||  ...|+++|.++|+++|++|++|+++..     +...
T Consensus       174 ~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~  251 (490)
T 2a7v_A          174 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP  251 (490)
T ss_dssp             -------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred             CeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCC
Confidence            2  22222  2    348999999986434899999888876  467999999999999999999999642     2334


Q ss_pred             ccccCCCcEEEECCcccCCccccceeEEEEeCHH---------------HHHHHHHHhHhh--CCCccH-HHHHH-H-HH
Q 013019          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHHVL--GGALNP-NAAYL-I-IR  401 (451)
Q Consensus       342 ~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e---------------li~~lr~~~~~~--G~~ls~-~~a~l-~-lr  401 (451)
                      .++. ++|+++.|+||+++|+.   ||+++++++               +.++++......  |+.... ..+.. + ..
T Consensus       252 ~~~~-~aDiv~~S~hK~l~Gp~---GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~  327 (490)
T 2a7v_A          252 SPFK-HADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ  327 (490)
T ss_dssp             CGGG-TCSEEEEESSGGGCSCS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH
T ss_pred             CCCC-CCCEEEECCcccCcccc---chheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            4554 69999999999998874   899988764               456666543211  221111 22211 1 12


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          402 GM-KTLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       402 gL-~tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      .+ +.+..+.++..+|++.|++.|.+. ++.
T Consensus       328 ~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~  357 (490)
T 2a7v_A          328 ACTPMFREYSLQVLKNARAMADALLER-GYS  357 (490)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHc-CcE
Confidence            22 345667888899999999999986 443

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.81  E-value=4.4e-19  Score=181.08  Aligned_cols=206  Identities=13%  Similarity=0.124  Sum_probs=144.0

Q ss_pred             HHHHHHHHhhhC-------CCcEEEeCCHH-HHHHHHHHHHccCCC----eEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          213 VVVEEKMSALEG-------AESTVIMASGM-SASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       213 ~~Lee~LA~l~g-------ae~~vv~sSG~-aAi~~al~all~~GD----~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ..|++.|+++++       .++.+++++|. +++..++.+++++||    +|++++|.|......+    +..|.++..+
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~  146 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEET----TYVRSGMYKW  146 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHH----HTTCBTTEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHH----HHcCCeEEEe
Confidence            789999999886       33456666665 899999999999999    9999999999866444    3445554443


Q ss_pred             CCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccc--cCCCcEEEECCccc
Q 013019          281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--SLGADLVLHSATKF  358 (451)
Q Consensus       281 d~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl--~~GaDiVv~S~SK~  358 (451)
                      +. |.+.++   .+ ++++|++++|+||||.+.+  +|++.++.+++++|+|++|..+. ..++  ..+.++++.|+||.
T Consensus       147 ~~-d~~~l~---~~-~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~-~~~l~~~~~~~i~~~S~SK~  218 (391)
T 3bwn_A          147 EG-DAWGFD---KK-GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH-YTPITRRQDHDIMLFTFSKI  218 (391)
T ss_dssp             EE-ESTTCC---CC-SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-TSCCCCCBCCSEEEEEHHHH
T ss_pred             cC-CHHHcC---CC-CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-CCccccCCCCeEEEEechhh
Confidence            32 222222   23 5899999999999999986  45442233349999999987421 1122  24678999999999


Q ss_pred             CCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHHH
Q 013019          359 IGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--------------LHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       359 l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t--------------l~~Rl~~~~~nA~~Lae~  423 (451)
                      ++.+| ++.|++++ +++++++++..+.....+.+...+..+...|+.              +....+...++.+.+.+.
T Consensus       219 ~g~~G-lRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  297 (391)
T 3bwn_A          219 TGHAG-SRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREV  297 (391)
T ss_dssp             HSCGG-GCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCc-cceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            98776 56788886 889999988877654445566655544444432              334455666788889999


Q ss_pred             HHcCCCeE
Q 013019          424 LEAHPKVL  431 (451)
Q Consensus       424 L~~~p~V~  431 (451)
                      |+++|++.
T Consensus       298 L~~~~~~~  305 (391)
T 3bwn_A          298 VKESDAFT  305 (391)
T ss_dssp             HHTCSSEE
T ss_pred             HHhCCCcc
Confidence            99987653

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.81  E-value=2.2e-19  Score=182.18  Aligned_cols=210  Identities=14%  Similarity=0.130  Sum_probs=152.4

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc------C-CCeEEEcCCCCcchHH-HHHHhhhcCCcE--
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------A-GGHIVTTTDCYRKTRI-FIETVLPKMGIT--  276 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~------~-GD~VIv~~~~Y~~t~~-~l~~~l~~~Gi~--  276 (451)
                      |.++...+|+++|++++|.++++++++|++|+..++.++..      + +|+|++.++.|.+... .+..    .|.+  
T Consensus        79 ~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~----~g~~~~  154 (397)
T 2ord_A           79 FWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTA----TGQPKY  154 (397)
T ss_dssp             SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHH----SBCHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhc----cCChhh
Confidence            46788999999999999988888999999999999988764      5 4789999999866433 3321    2222  


Q ss_pred             ----------EEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc-c---ccHHHHHHHHHhcCCEEEEecCCCCCC-cc
Q 013019          277 ----------ATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR-C---VDVKLVSDLCHKKGAIVCIDGTFATPL-NQ  341 (451)
Q Consensus       277 ----------v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~-v---~DL~~IaelA~~~g~~lVVD~tfa~~~-~~  341 (451)
                                +..++..|+++|++++++ ++++|++++|+||||. +   .++++|.++|+++|++||+|+++.... ..
T Consensus       155 ~~~~~p~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g  233 (397)
T 2ord_A          155 QKPFEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTG  233 (397)
T ss_dssp             HGGGCSCCTTEEEECTTCHHHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred             ccccCCCCCCeeEecCCCHHHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCc
Confidence                      666777799999999986 4999999999999998 3   478999999999999999999986321 11


Q ss_pred             cc-----ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHH
Q 013019          342 KA-----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQN  414 (451)
Q Consensus       342 ~p-----l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~  414 (451)
                      .+     +....|++  |++|++++ | .+.|+++++++++ .++..........++..++.+...|+.+.  ...++..
T Consensus       234 ~~~~~~~~~~~~d~~--s~sK~~~~-G-~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  308 (397)
T 2ord_A          234 KLFAYQKYGVVPDVL--TTAKGLGG-G-VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVE  308 (397)
T ss_dssp             SSSHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHH
T ss_pred             cchhhhhhCCCCCee--eeccccCC-C-cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            11     12236866  67899984 3 4678888887765 54322222223456777766666666543  2455666


Q ss_pred             HHHHHHHHHHHc
Q 013019          415 STALRMAEILEA  426 (451)
Q Consensus       415 ~nA~~Lae~L~~  426 (451)
                      ++++.+.+.|++
T Consensus       309 ~~~~~l~~~L~~  320 (397)
T 2ord_A          309 EKGNYLMKKLQE  320 (397)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777777765

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.81  E-value=6.9e-19  Score=183.52  Aligned_cols=210  Identities=14%  Similarity=0.149  Sum_probs=152.8

Q ss_pred             hHHHHHHHHHhhhCCCc-EEEeCCHH-HHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          211 TTVVVEEKMSALEGAES-TVIMASGM-SASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae~-~vv~sSG~-aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ..+++++++++++|.+. ++++++|+ .++..++.++..  +|++||++++.|.+...    .++..|+++..++.    
T Consensus       134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~----~~~~~G~~~~~v~~~~~~  209 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK----AVSFVGMNMRLVETVLDG  209 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----HHHHTTCEEEEECCEEET
T ss_pred             HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH----HHHHcCCCceEEEEeccC
Confidence            34568999999999854 56666777 566656666544  67889999999987553    34457888877653    


Q ss_pred             ----CCHHHHHHhh-cC---CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccc---cC--CC
Q 013019          283 ----ADMEGLEAAL-NN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL---SL--GA  348 (451)
Q Consensus       283 ----~D~d~Le~ai-~~---~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl---~~--Ga  348 (451)
                          .|+++|+++| ++   .++.+|++++|+||+|.+.|+++|.++|+++|+++++|++|+.... ..+.   .+  ++
T Consensus       210 ~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~  289 (456)
T 2z67_A          210 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV  289 (456)
T ss_dssp             TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCC
Confidence                4799999999 52   3588899999999999999999999999999999999999875432 1111   12  79


Q ss_pred             cEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCC--ccHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA--LNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~--ls~~~a~l~lrg--L~tl~~Rl~~~~~nA~~Lae~  423 (451)
                      |+++.|++|+++++.  .+|+++. ++++++++...  ..|..  ......|..+..  .+.+..+.++..++++.+.+.
T Consensus       290 D~~~~s~hK~~~~p~--g~G~l~~~~~~~~~~l~~~--~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~  365 (456)
T 2z67_A          290 DAVVSSSDKNLLTPI--GGGLVYSTDAEFIKEISLS--YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL  365 (456)
T ss_dssp             SEEEEEHHHHHCCCS--SCEEEEESCHHHHHHHHTT--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcCCCC--CeEEEEEcCHHHHhhcCcC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999876653  4788888 57787776432  23322  123334444333  345666778888899999999


Q ss_pred             HHcCC
Q 013019          424 LEAHP  428 (451)
Q Consensus       424 L~~~p  428 (451)
                      |++.|
T Consensus       366 L~~~~  370 (456)
T 2z67_A          366 LNDLS  370 (456)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            98874

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.80  E-value=2.6e-18  Score=174.17  Aligned_cols=213  Identities=15%  Similarity=0.191  Sum_probs=153.5

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCC--cEEEEeC-----
Q 013019          210 PTTVVVEEKMSALEGAESTVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVID-----  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~G--i~v~~vd-----  281 (451)
                      ...+++++++++++|.++.+++ +||++|+.+++. ++.+||+||+.++.|.+..  +...+...|  .++.+++     
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~g  111 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERTE  111 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEESS
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEeccccc
Confidence            4567789999999998766665 588899998875 4579999999998887642  223334444  3555443     


Q ss_pred             ---------CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccccccCCCc
Q 013019          282 ---------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGAD  349 (451)
Q Consensus       282 ---------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaD  349 (451)
                               ..|+++|++++++.++++|++..++|++|.+.|   +++|.++|+++|+++|+|++++.........+|+|
T Consensus       112 ~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~~~~~~~d  191 (379)
T 3ke3_A          112 DTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDMKELGID  191 (379)
T ss_dssp             CCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTCS
T ss_pred             cccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCccccccccCCC
Confidence                     368999999995424899999999999999999   99999999999999999999872222333346899


Q ss_pred             EEEECCcccCCccccceeEEEEeCHHHHHHHHHHh----------------H-hhC-----CCccHHHHHHHHHhhHH--
Q 013019          350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------H-VLG-----GALNPNAAYLIIRGMKT--  405 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~----------------~-~~G-----~~ls~~~a~l~lrgL~t--  405 (451)
                      +++.|++|+++|+.  .+|+++.+++++++++...                . ..|     .+.+....+.+..+++.  
T Consensus       192 ~~~~s~~K~l~~~~--g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~  269 (379)
T 3ke3_A          192 VLISAPQKGWSSTP--CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAK  269 (379)
T ss_dssp             EEEECTTTTTCSCC--CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhcCCCC--ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999998774  3789999999888775311                0 011     14444444433334433  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHcC
Q 013019          406 ---LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       406 ---l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                         +..+.++..++++.+.+.|++.
T Consensus       270 ~~g~~~~~~~~~~l~~~l~~~l~~~  294 (379)
T 3ke3_A          270 EIGFDILRDAQWELGNRVRKVLTDK  294 (379)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHc
Confidence               2445566677788888888876

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.80  E-value=1.9e-18  Score=183.20  Aligned_cols=221  Identities=14%  Similarity=0.158  Sum_probs=160.4

Q ss_pred             CchhHHHHHH----HHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc--------------CCCeEEEcCCCCcchHHH
Q 013019          208 GNPTTVVVEE----KMSALEGAE----STVIMASGMSASTVMLLALVP--------------AGGHIVTTTDCYRKTRIF  265 (451)
Q Consensus       208 ~npt~~~Lee----~LA~l~gae----~~vv~sSG~aAi~~al~all~--------------~GD~VIv~~~~Y~~t~~~  265 (451)
                      ..|....+|+    ++++++|.+    ..+++++|++|+..++.++..              +++.|++++..|.+....
T Consensus       129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~  208 (511)
T 3vp6_A          129 IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKA  208 (511)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHH
Confidence            5677666665    556677764    567788889999888877654              467899999999886644


Q ss_pred             HHHhhhcCCc---EEEEeCCC-----CHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEe
Q 013019          266 IETVLPKMGI---TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCID  332 (451)
Q Consensus       266 l~~~l~~~Gi---~v~~vd~~-----D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD  332 (451)
                      +    ...|+   ++..++.+     |+++|+++|+++     .+++|++++|+|++|.+.|+++|+++|++||+++++|
T Consensus       209 ~----~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD  284 (511)
T 3vp6_A          209 G----AALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVD  284 (511)
T ss_dssp             H----HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred             H----HHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEE
Confidence            3    34455   67776643     899999999753     1789999999999999999999999999999999999


Q ss_pred             cCCCCCCcccc-----c--cCCCcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHh-Hhh----------------
Q 013019          333 GTFATPLNQKA-----L--SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLH-HVL----------------  387 (451)
Q Consensus       333 ~tfa~~~~~~p-----l--~~GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~-~~~----------------  387 (451)
                      ++|+.+....+     +  ..++|+++.+++|+++++.  .+|+++. +++++++..... .++                
T Consensus       285 ~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~--g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  362 (511)
T 3vp6_A          285 AAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK  362 (511)
T ss_dssp             ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGG
T ss_pred             ccchhhHhhChhhhhhccCCccCCEEEECcccccCCCc--CeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCC
Confidence            99876543211     1  1257999999999998774  2455554 555555432110 000                


Q ss_pred             ----CCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Q 013019          388 ----GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLLF  434 (451)
Q Consensus       388 ----G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~  434 (451)
                          +.....+..|.+++  +.+.+..+++++.++++.+.+.|+++|+++.+.
T Consensus       363 ~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~  415 (511)
T 3vp6_A          363 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF  415 (511)
T ss_dssp             SSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESS
T ss_pred             CCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence                11123455555554  567788899999999999999999999886643

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.80  E-value=9.5e-19  Score=181.71  Aligned_cols=214  Identities=21%  Similarity=0.204  Sum_probs=153.5

Q ss_pred             CchhHHHHH----HHHHhhhCCCcEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHH-hhhcCCcEEEEeC
Q 013019          208 GNPTTVVVE----EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID  281 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~-~l~~~Gi~v~~vd  281 (451)
                      +++..+.++    +++++++|.+...+ ++||++|+..++.+++++||+|++.++.|++.+..... .+...+..+..++
T Consensus        85 g~~~~~~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  164 (447)
T 3h7f_A           85 GCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYG  164 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEEC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcC
Confidence            445544444    89999999987777 89999999999999999999999999998773211000 0111123333333


Q ss_pred             ------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-----CccccccCCCcE
Q 013019          282 ------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQKALSLGADL  350 (451)
Q Consensus       282 ------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-----~~~~pl~~GaDi  350 (451)
                            ..|+++|++++++.++++|++++|+||++.  ++++|.++|+++|++||+|+++..+     ....++. ++|+
T Consensus       165 ~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~-~~di  241 (447)
T 3h7f_A          165 VDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVP-HADV  241 (447)
T ss_dssp             CCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT-TCSE
T ss_pred             cCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCC-CCcE
Confidence                  258999999986434889999999998876  9999999999999999999996432     2223332 5899


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHH--HHHHH-hh-HHHHHHHHHHHHHHHHHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAA--YLIIR-GM-KTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a--~l~lr-gL-~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      ++.|++|+++|+   ++|+++++++++++++.....  .|....+..+  ..++. .+ +.+..+.++..++++.+.+.|
T Consensus       242 ~~~s~sK~l~G~---~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L  318 (447)
T 3h7f_A          242 VSTTVHKTLGGG---RSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRL  318 (447)
T ss_dssp             EEEESSGGGCCC---SCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCcCCCCC---CeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999876   489999999888888765432  2222222121  11222 22 256677888899999999999


Q ss_pred             HcC
Q 013019          425 EAH  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +++
T Consensus       319 ~~~  321 (447)
T 3h7f_A          319 MAP  321 (447)
T ss_dssp             TSH
T ss_pred             Hhc
Confidence            876

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.80  E-value=1.8e-18  Score=178.02  Aligned_cols=217  Identities=14%  Similarity=0.142  Sum_probs=154.3

Q ss_pred             CCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc-------CC-CeEEEcCCCCcchHH-HHHHh-hh----
Q 013019          206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRI-FIETV-LP----  271 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~-------~G-D~VIv~~~~Y~~t~~-~l~~~-l~----  271 (451)
                      .+.++...+|+++|+++.|.+++++++||++|+..++.++..       +| ++||+.++.|.+... .+... ..    
T Consensus        95 ~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~  174 (420)
T 2pb2_A           95 VFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSD  174 (420)
T ss_dssp             TSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHT
T ss_pred             ccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccc
Confidence            356788999999999999988889999999999999998775       67 489999999976432 22111 00    


Q ss_pred             ---cCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc----cccHHHHHHHHHhcCCEEEEecCCCCC-Cc---
Q 013019          272 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR----CVDVKLVSDLCHKKGAIVCIDGTFATP-LN---  340 (451)
Q Consensus       272 ---~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~----v~DL~~IaelA~~~g~~lVVD~tfa~~-~~---  340 (451)
                         .....+..++..|+++|++++++ ++++|++|.++|++|.    ..++++|.++|+++|++||+|+++... ..   
T Consensus       175 ~~~p~~~~~~~~~~~d~~~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~  253 (420)
T 2pb2_A          175 GFGPKPADIIHVPFNDLHAVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL  253 (420)
T ss_dssp             TSSSCCSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred             cCCCCCCCeEEecCCCHHHHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence               11123566677799999999987 4999999999888775    246899999999999999999998532 11   


Q ss_pred             --cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHH
Q 013019          341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST  416 (451)
Q Consensus       341 --~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~n  416 (451)
                        ........|++  |++|.+++ | .+.|++++++++++.++..........++..+..++..|+.+.  ...++..++
T Consensus       254 ~~~~~~~~~~dii--t~sK~l~~-G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~  329 (420)
T 2pb2_A          254 FAYMHYGVTPDIL--TSAKALGG-G-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTK  329 (420)
T ss_dssp             SHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHH
T ss_pred             HHHHhcCCCCCeE--EecccccC-C-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence              11223456877  67899984 4 4678888898877766542222222456777766666666542  345666677


Q ss_pred             HHHHHHHHHcC
Q 013019          417 ALRMAEILEAH  427 (451)
Q Consensus       417 A~~Lae~L~~~  427 (451)
                      .+.+.+.|++.
T Consensus       330 ~~~l~~~L~~~  340 (420)
T 2pb2_A          330 RQQFVQHLQAI  340 (420)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777653

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.80  E-value=9e-19  Score=177.75  Aligned_cols=213  Identities=17%  Similarity=0.183  Sum_probs=143.7

Q ss_pred             HHHHHHHHHhhhCCCcE-EEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHH-hhhcCCcEEEEe--C---CCC
Q 013019          212 TVVVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVI--D---PAD  284 (451)
Q Consensus       212 ~~~Lee~LA~l~gae~~-vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~-~l~~~Gi~v~~v--d---~~D  284 (451)
                      .+.+++++++++|.+.. +++++|++|+..++.+++++||+|+++.+.|+++...... .+...++....+  +   ..|
T Consensus        78 ~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d  157 (420)
T 3gbx_A           78 EQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKID  157 (420)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCC
T ss_pred             HHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcC
Confidence            34456889999998655 5589999999999999999999999999999874311111 111112222222  2   258


Q ss_pred             HHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-----cccccCCCcEEEECCcccC
Q 013019          285 MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFI  359 (451)
Q Consensus       285 ~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-----~~pl~~GaDiVv~S~SK~l  359 (451)
                      +++|+++++++++++|++++|+||  ...|+++|.++|++||+++|+|+++..+..     ...+. .+|+++.|+||++
T Consensus       158 ~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~  234 (420)
T 3gbx_A          158 YDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTL  234 (420)
T ss_dssp             HHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGG
T ss_pred             HHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeecccCC
Confidence            999999997644899999999986  478999999999999999999999754321     22222 3799999999999


Q ss_pred             CccccceeEEEEeCH---HHHHHHHHHhHh--hCCCccHHHH--HHHH-Hhh-HHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          360 GGHNDVLAGSISGSG---KLVTQIRNLHHV--LGGALNPNAA--YLII-RGM-KTLHLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~---eli~~lr~~~~~--~G~~ls~~~a--~l~l-rgL-~tl~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      +|+.   ||++++++   ++.+.++.....  .+....+..+  ...+ ..+ +.+..+.++..++++.+.+.|++. ++
T Consensus       235 ~g~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~  310 (420)
T 3gbx_A          235 AGPR---GGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GY  310 (420)
T ss_dssp             CSCS---CEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             CCCC---ceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            8764   79999987   777777654332  2222222211  1122 222 455666788888899999999873 44


Q ss_pred             E
Q 013019          431 L  431 (451)
Q Consensus       431 ~  431 (451)
                      .
T Consensus       311 ~  311 (420)
T 3gbx_A          311 K  311 (420)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.80  E-value=2.3e-18  Score=181.21  Aligned_cols=217  Identities=16%  Similarity=0.104  Sum_probs=150.9

Q ss_pred             chhHHHHH----HHHHhhhCCC-----cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHH----hhhcCC-
Q 013019          209 NPTTVVVE----EKMSALEGAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET----VLPKMG-  274 (451)
Q Consensus       209 npt~~~Le----e~LA~l~gae-----~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~----~l~~~G-  274 (451)
                      ++..+.++    +++++++|.+     ..++++||++|+.+++.+++++||+|+++++.|+++......    .....| 
T Consensus        85 ~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~  164 (483)
T 1rv3_A           85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSI  164 (483)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccc
Confidence            44455555    8899999975     348899999999998999999999999999999886421100    011112 


Q ss_pred             -cEEEEe--C----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-----Cccc
Q 013019          275 -ITATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQK  342 (451)
Q Consensus       275 -i~v~~v--d----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-----~~~~  342 (451)
                       +....+  +    ..|+++|++++++.++++|++ +++|++ .+.|+++|.++|+++|++|++|+++..+     ....
T Consensus       165 ~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~  242 (483)
T 1rv3_A          165 FFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPS  242 (483)
T ss_dssp             HSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCC
T ss_pred             eEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCC
Confidence             333333  3    248999999998335899999 899998 8999999999999999999999997532     2223


Q ss_pred             cccCCCcEEEECCcccCCccccceeEEEEeCHH---------------HHHHHHHHhH-h-hCCCccH-HHHH-HHHHhh
Q 013019          343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHH-V-LGGALNP-NAAY-LIIRGM  403 (451)
Q Consensus       343 pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e---------------li~~lr~~~~-~-~G~~ls~-~~a~-l~lrgL  403 (451)
                      ++. ++|+++.|+||+|+|+.   +|+++++++               +.+++..... . .|..... ..+. .+++.+
T Consensus       243 p~~-~~div~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~  318 (483)
T 1rv3_A          243 PFE-HCHVVTTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA  318 (483)
T ss_dssp             GGG-TCSEEEEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH
T ss_pred             CCC-CCcEEEecCcccCCCCC---ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH
Confidence            333 68999999999998875   799988764               3344433211 1 1222111 1111 122222


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          404 --KTLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       404 --~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                        ..+..+.++..++++.+++.|+++ +++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~  348 (483)
T 1rv3_A          319 MTPEFKEYQRQVVANCRALSAALVEL-GYKI  348 (483)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             hChhHHHHHHHHHHHHHHHHHHHHhc-CCEe
Confidence              345667788889999999999987 6643

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.80  E-value=1.3e-18  Score=185.40  Aligned_cols=157  Identities=14%  Similarity=0.164  Sum_probs=117.4

Q ss_pred             HHHHHHHHhhh----CC-------CcEEEeCCHHHHHHHHHHH-----HccCCCeEEEcCCCCcchHHHHHHhhhcCCcE
Q 013019          213 VVVEEKMSALE----GA-------ESTVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT  276 (451)
Q Consensus       213 ~~Lee~LA~l~----ga-------e~~vv~sSG~aAi~~al~a-----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~  276 (451)
                      ..|++.+++++    +.       ++.+++++|++|+..++.+     ++++||+|++++|.|.+..    ..+...|.+
T Consensus       141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~~~g~~  216 (533)
T 3f6t_A          141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPELKDYE  216 (533)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGGGGGSE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHHHcCCe
Confidence            45555555554    32       3455555666999999988     7899999999999998755    344455777


Q ss_pred             EEEeCCC---------CHHHHHHhhcCCCeEEEEEeCCCCCccccccHH---HHHHHHH-hcCCEEEEecCCCCCCcc-c
Q 013019          277 ATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFATPLNQ-K  342 (451)
Q Consensus       277 v~~vd~~---------D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~---~IaelA~-~~g~~lVVD~tfa~~~~~-~  342 (451)
                      +..++..         |+++|++++++ ++++|++++|+||||.+.+++   +|+++|+ ++|+++|+|++|+..... .
T Consensus       217 ~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~  295 (533)
T 3f6t_A          217 LVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK  295 (533)
T ss_dssp             EEEECCCEETTTTSEECHHHHHHHSCT-TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC
T ss_pred             EEEEEecCCcccCCCCCHHHHHHHhCC-CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc
Confidence            7666532         79999999987 499999999999999998765   7888888 689999999998753221 1


Q ss_pred             c---ccCCCcEEEECCcccCCccccceeEEEEeCHH
Q 013019          343 A---LSLGADLVLHSATKFIGGHNDVLAGSISGSGK  375 (451)
Q Consensus       343 p---l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e  375 (451)
                      +   ...+.++++.|+||.++.+| .+.|+++++++
T Consensus       296 ~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~~~~  330 (533)
T 3f6t_A          296 SIYSVVPYNTMLVYSYSKLFGCTG-WRLGVIALNEK  330 (533)
T ss_dssp             CHHHHSGGGEEEEEESHHHHTCGG-GCEEEEEEESS
T ss_pred             CHhhcCCCCEEEEecCcccCCCcc-cceEEEEECcH
Confidence            1   11235699999999998776 46788887654

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.80  E-value=7.7e-18  Score=174.76  Aligned_cols=217  Identities=17%  Similarity=0.124  Sum_probs=156.0

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc---------cCC-CeEEEcCCCCcchH-HHHHHhhh----
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTR-IFIETVLP----  271 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all---------~~G-D~VIv~~~~Y~~t~-~~l~~~l~----  271 (451)
                      +.++...+|+++|++++|.+.+++++||++|+..++..+.         .+| |+||+.++.|.+.. ..+ ....    
T Consensus       115 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~-~~~g~~~~  193 (439)
T 2oat_A          115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI-SSSTDPTS  193 (439)
T ss_dssp             SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHH-TTCCCHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHh-hcCCChhc
Confidence            4567889999999999998888999999999999998765         357 89999999997643 222 1111    


Q ss_pred             -----cCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc----cHHHHHHHHHhcCCEEEEecCCCCC-C--
Q 013019          272 -----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATP-L--  339 (451)
Q Consensus       272 -----~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~----DL~~IaelA~~~g~~lVVD~tfa~~-~--  339 (451)
                           .....+..++..|+++|+++++..++++|++|..+|++|.+.    ++++|.++|++||++||+||++... .  
T Consensus       194 ~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g  273 (439)
T 2oat_A          194 YDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG  273 (439)
T ss_dssp             HTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred             ccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC
Confidence                 111355667777999999999533589999987777889776    7999999999999999999998421 1  


Q ss_pred             ---ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHH
Q 013019          340 ---NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQN  414 (451)
Q Consensus       340 ---~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~  414 (451)
                         ..+......|++  |++|.+++ |...+|++++++++++.++..........++..+..++..++.+..  ..++..
T Consensus       274 ~~~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~  350 (439)
T 2oat_A          274 RWLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENAD  350 (439)
T ss_dssp             SSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             cchhHHHhCCCCcEE--EecccccC-CCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence               112223346876  78999986 3246899999998877665422222234467776666666665542  356666


Q ss_pred             HHHHHHHHHHHcC
Q 013019          415 STALRMAEILEAH  427 (451)
Q Consensus       415 ~nA~~Lae~L~~~  427 (451)
                      ++.+.+.+.|++.
T Consensus       351 ~~~~~l~~~L~~l  363 (439)
T 2oat_A          351 KLGIILRNELMKL  363 (439)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHh
Confidence            7788888888764

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.80  E-value=2.7e-18  Score=189.48  Aligned_cols=219  Identities=11%  Similarity=0.031  Sum_probs=159.4

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      +++...++|+.+|+++|++.++++++|+ +|+.+++++++++||+|+++.++|.+.+..   .+...|+++.+++.    
T Consensus       171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~  247 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNP  247 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECT
T ss_pred             ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccc
Confidence            4567889999999999999999999998 899999999999999999999999886643   14556887776642    


Q ss_pred             ------CCHHHH-----HHhhcCCC-----e----EEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc--
Q 013019          283 ------ADMEGL-----EAALNNNN-----V----SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--  340 (451)
Q Consensus       283 ------~D~d~L-----e~ai~~~~-----t----klV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~--  340 (451)
                            .|+++|     ++++++++     +    ++|++++| ||+|.+.|+++|+++|+++|++|++|++|+....  
T Consensus       248 ~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~  326 (730)
T 1c4k_A          248 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI  326 (730)
T ss_dssp             TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred             cCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccC
Confidence                  266777     88887631     4    89999998 5899999999999999999999999999875321  


Q ss_pred             -----cccccC---CCc----EEEECCcccCCccccceeEEEEeCHHHH---------HHHHHHhHhhC-CCccHHHHHH
Q 013019          341 -----QKALSL---GAD----LVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLG-GALNPNAAYL  398 (451)
Q Consensus       341 -----~~pl~~---GaD----iVv~S~SK~l~G~gdv~gG~Iv~~~eli---------~~lr~~~~~~G-~~ls~~~a~l  398 (451)
                           ..++..   |+|    +++.|+||+++|++  .+|++..+++.+         .+++....... +.++......
T Consensus       327 ~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaa  404 (730)
T 1c4k_A          327 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA  404 (730)
T ss_dssp             GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             cccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHH
Confidence                 123433   888    99999999999875  467775433221         23333322222 2333322211


Q ss_pred             ---HHHhhH--HHHHHHHHHHHHHHHHHHHHHc-CCCeEE
Q 013019          399 ---IIRGMK--TLHLRVQQQNSTALRMAEILEA-HPKVLL  432 (451)
Q Consensus       399 ---~lrgL~--tl~~Rl~~~~~nA~~Lae~L~~-~p~V~~  432 (451)
                         +.+.++  ....++++..++++.+.+.|++ .++++.
T Consensus       405 l~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v  444 (730)
T 1c4k_A          405 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRP  444 (730)
T ss_dssp             HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEE
Confidence               111122  2355678888999999999998 677754

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.79  E-value=3.7e-18  Score=172.52  Aligned_cols=213  Identities=15%  Similarity=0.103  Sum_probs=145.8

Q ss_pred             hhHHHHHHHHHhhh-CC----CcEEE--eCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          210 PTTVVVEEKMSALE-GA----ESTVI--MASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       210 pt~~~Lee~LA~l~-ga----e~~vv--~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ....+|+++|++++ +.    ++.++  +++|++|+.+++..+..  +||+|+++.+.|.+....+    ...|.++..+
T Consensus        69 ~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~  144 (394)
T 2ay1_A           69 SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM----NFMGLPVQTY  144 (394)
T ss_dssp             SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HHHTCCEEEE
T ss_pred             CCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCceEEE
Confidence            34577889998886 42    45666  77788999999887755  9999999999999866443    3456666665


Q ss_pred             CC-------CCHHHHHHhhcCC--CeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----cc
Q 013019          281 DP-------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA  343 (451)
Q Consensus       281 d~-------~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~p  343 (451)
                      +.       .|+++|++++++.  +++++++++|+||||.+.+   +++|.++|+++|+++|+|++|......     .+
T Consensus       145 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~  224 (394)
T 2ay1_A          145 RYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAG  224 (394)
T ss_dssp             ECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHH
T ss_pred             ecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHH
Confidence            54       2789999998753  3678888999999999985   668899999999999999998764321     11


Q ss_pred             ---c-cCC-CcEEEECCcccCCccccceeEEEEe---CHHHHHHHHH----HhHhhCCCccHHHHHHHHHhhH-------
Q 013019          344 ---L-SLG-ADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRN----LHHVLGGALNPNAAYLIIRGMK-------  404 (451)
Q Consensus       344 ---l-~~G-aDiVv~S~SK~l~G~gdv~gG~Iv~---~~eli~~lr~----~~~~~G~~ls~~~a~l~lrgL~-------  404 (451)
                         + ..+ .++++.|+||.++.+| .+.|++++   ++++++++..    .........++..++.+...|+       
T Consensus       225 ~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~  303 (394)
T 2ay1_A          225 TRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRAD  303 (394)
T ss_dssp             HHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHH
T ss_pred             HHHHhhcCCCEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHH
Confidence               1 123 3477999999998665 46788887   6766554332    2222212224444443333332       


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          405 ---TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       405 ---tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                         .+....++..++.+.+.+.|+++
T Consensus       304 ~~~~~~~~~~~~~~~~~~l~~~L~~~  329 (394)
T 2ay1_A          304 WMAELEAVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               33344555666777777777765

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.67  E-value=4.3e-21  Score=194.66  Aligned_cols=215  Identities=17%  Similarity=0.144  Sum_probs=151.1

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ...|++.+++++    |    .++.+++++|++|+..++.+++++||+|++..+.|.+....+    ...|.++..++. 
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~~~~  143 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSV----RLNNRKLVSNSLK  143 (392)
Confidence            556777777654    3    244555566679999999999999999999999999866433    344555554432 


Q ss_pred             -------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccc----
Q 013019          283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL----  344 (451)
Q Consensus       283 -------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl----  344 (451)
                             .|+++|++++++.++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|......    .++    
T Consensus       144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  223 (392)
T 3b1d_A          144 EENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVS  223 (392)
Confidence                   47788998887335899999999999999875   889999999999999999998653211    011    


Q ss_pred             c--CCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhC-CCccHHHHHHHHHhhH----HHHHHHHHHHHH
Q 013019          345 S--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLG-GALNPNAAYLIIRGMK----TLHLRVQQQNST  416 (451)
Q Consensus       345 ~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G-~~ls~~~a~l~lrgL~----tl~~Rl~~~~~n  416 (451)
                      .  .+.++++.|+||.++.+| .+.|++++++ +++++++.....++ ...++..++.+...++    .+....++..++
T Consensus       224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  302 (392)
T 3b1d_A          224 PDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEEN  302 (392)
Confidence            1  345689999999997565 5678888764 58888877665543 1334444443333332    233444556677


Q ss_pred             HHHHHHHHHc-CCCeE
Q 013019          417 ALRMAEILEA-HPKVL  431 (451)
Q Consensus       417 A~~Lae~L~~-~p~V~  431 (451)
                      .+.+.+.|++ +|++.
T Consensus       303 ~~~l~~~l~~~~~~~~  318 (392)
T 3b1d_A          303 IQFAVEYFAQEAPRLK  318 (392)
Confidence            7788888877 56553

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.79  E-value=3.7e-18  Score=176.76  Aligned_cols=215  Identities=15%  Similarity=0.170  Sum_probs=149.8

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc----CCCe---EEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----AGGH---IVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~----~GD~---VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ..+...+|+++|+++++.++++++++|++|+.+++.+++.    +||+   |+++.+.|+.+...+    ...|.++..+
T Consensus        74 ~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~----~~~g~~~~~~  149 (467)
T 1ax4_A           74 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV----ELNGCKAINI  149 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH----HHTTCEEEEC
T ss_pred             cCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHH----hccCCceecc
Confidence            3577889999999999998889999999999999999988    9999   999855545444333    3345554432


Q ss_pred             C---------------CCCHHHHHHhhcC---CCeEEEEEeCCCCCc-ccccc---HHHHHHHHHhcCCEEEEecCCCC-
Q 013019          281 D---------------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT-  337 (451)
Q Consensus       281 d---------------~~D~d~Le~ai~~---~~tklV~lesPsNPt-G~v~D---L~~IaelA~~~g~~lVVD~tfa~-  337 (451)
                      +               ..|+++|++++++   .++++|++++|+||+ |.+.+   +++|.++|++||++||+|+++.. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~  229 (467)
T 1ax4_A          150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE  229 (467)
T ss_dssp             BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred             cccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhh
Confidence            1               1379999999974   249999999999999 77754   68999999999999999998432 


Q ss_pred             ----------CCc-ccccc------CCCcEEEECCcccCCccccceeEEEEeC-H-HHHHHHHHHhHhhCC-----CccH
Q 013019          338 ----------PLN-QKALS------LGADLVLHSATKFIGGHNDVLAGSISGS-G-KLVTQIRNLHHVLGG-----ALNP  393 (451)
Q Consensus       338 ----------~~~-~~pl~------~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~-eli~~lr~~~~~~G~-----~ls~  393 (451)
                                ... ....+      .++|+++.|+||.++.+   .||+++++ + +++++++..+..++.     ..+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~  306 (467)
T 1ax4_A          230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG  306 (467)
T ss_dssp             HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred             cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccc
Confidence                      111 11111      24789999999998765   46888887 7 888887765443221     1222


Q ss_pred             HHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          394 NAAYLIIRGMKTL--HLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       394 ~~a~l~lrgL~tl--~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      .....+..+++.+  ..++++..++++.+.+.|++ +++
T Consensus       307 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~  344 (467)
T 1ax4_A          307 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE-AGI  344 (467)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh-CCC
Confidence            2112111233322  12555666778889999987 344

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.79  E-value=1.3e-17  Score=172.68  Aligned_cols=217  Identities=17%  Similarity=0.177  Sum_probs=148.2

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHc---------cCC-CeEEEcCCCCcchHHHHHHhhh-----
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP-----  271 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all---------~~G-D~VIv~~~~Y~~t~~~l~~~l~-----  271 (451)
                      +.++...+|+++|+++.|.+.+++++||++|+..++..+.         .+| |+||+.++.|.+..........     
T Consensus       104 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~  183 (433)
T 1z7d_A          104 FFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT  183 (433)
T ss_dssp             SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred             cCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence            5677889999999999998889999999999999988754         367 9999999999774321111111     


Q ss_pred             ----cCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccc----cHHHHHHHHHhcCCEEEEecCCCCC-C---
Q 013019          272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATP-L---  339 (451)
Q Consensus       272 ----~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~----DL~~IaelA~~~g~~lVVD~tfa~~-~---  339 (451)
                          .....+..++..|+++|+++++..++++|++|..+|++|.+.    ++++|.++|+++|++||+||++... .   
T Consensus       184 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~  263 (433)
T 1z7d_A          184 SNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK  263 (433)
T ss_dssp             --------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred             ccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc
Confidence                011345566777999999999433589999987777889876    7999999999999999999998532 1   


Q ss_pred             --ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHH
Q 013019          340 --NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS  415 (451)
Q Consensus       340 --~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~  415 (451)
                        .........|++  |++|.+++ |...+|++++++++++.++..........++..+..++..|+.+..  ..++..+
T Consensus       264 ~~~~~~~~~~~di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~  340 (433)
T 1z7d_A          264 LLCVHHYNVKPDVI--LLGKALSG-GHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK  340 (433)
T ss_dssp             SSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             chhhHhcCCCCCEE--EECccccC-CCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence              112223346876  78899985 3246899999998877665422222224567766666666665532  3455566


Q ss_pred             HHHHHHHHHHc
Q 013019          416 TALRMAEILEA  426 (451)
Q Consensus       416 nA~~Lae~L~~  426 (451)
                      +.+.+.+.|++
T Consensus       341 ~~~~l~~~L~~  351 (433)
T 1z7d_A          341 LGGPFLENLKR  351 (433)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            67777776654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.79  E-value=4e-18  Score=173.47  Aligned_cols=215  Identities=11%  Similarity=0.087  Sum_probs=143.7

Q ss_pred             hhHHHHHHHHHhh--hC-C--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcE-EEEeCCC
Q 013019          210 PTTVVVEEKMSAL--EG-A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDPA  283 (451)
Q Consensus       210 pt~~~Lee~LA~l--~g-a--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~-v~~vd~~  283 (451)
                      +....|+++|+++  .| .  ++.++++++++++..++ .++.+||+|++++|.|.+....    +...|.+ +..++..
T Consensus        75 ~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~  149 (400)
T 3asa_A           75 FGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLDI----ARLTGAKEIIALPCL  149 (400)
T ss_dssp             TCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHHH----HHHTTCSEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHHH----HHHcCCcceEecccc
Confidence            4567899999998  46 2  45666666678888754 5668999999999999886543    3445766 6666542


Q ss_pred             CHHHHHHhhcC-CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc-----cccccC----CCcE
Q 013019          284 DMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL----GADL  350 (451)
Q Consensus       284 D~d~Le~ai~~-~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~-----~~pl~~----GaDi  350 (451)
                      +.+.+...+++ .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|.....     .....+    +.++
T Consensus       150 ~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i  229 (400)
T 3asa_A          150 QENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAI  229 (400)
T ss_dssp             GGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEE
T ss_pred             hhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceE
Confidence            11111111111 24899999999999999986   66789999999999999999874211     111122    2358


Q ss_pred             EEECCcccCCccccceeEEEEeCHHH-------HHHHHHHhH-hhCCCccHHHHHHHHHhhHH--HHHHHHHHHHHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKL-------VTQIRNLHH-VLGGALNPNAAYLIIRGMKT--LHLRVQQQNSTALRM  420 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~el-------i~~lr~~~~-~~G~~ls~~~a~l~lrgL~t--l~~Rl~~~~~nA~~L  420 (451)
                      ++.|+||.++.+| .+.|++++++++       ++++..... ......++.....+...++.  +....++..++.+.+
T Consensus       230 ~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l  308 (400)
T 3asa_A          230 EINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLL  308 (400)
T ss_dssp             EEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             EEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            8999999998665 568999998887       666543222 22223455554444444443  334456666788888


Q ss_pred             HHHHHcCCCeE
Q 013019          421 AEILEAHPKVL  431 (451)
Q Consensus       421 ae~L~~~p~V~  431 (451)
                      .+.|++. ++.
T Consensus       309 ~~~L~~~-g~~  318 (400)
T 3asa_A          309 RKALLAT-GFE  318 (400)
T ss_dssp             HHHHHHT-TCE
T ss_pred             HHHHHHC-CCe
Confidence            8999876 443

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.79  E-value=1.1e-17  Score=170.10  Aligned_cols=207  Identities=17%  Similarity=0.183  Sum_probs=138.1

Q ss_pred             HHHHHHhhhCCCcEE-EeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHH-hhhcCCcEEEEeCC------CCHH
Q 013019          215 VEEKMSALEGAESTV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP------ADME  286 (451)
Q Consensus       215 Lee~LA~l~gae~~v-v~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~-~l~~~Gi~v~~vd~------~D~d  286 (451)
                      .++.+++++|.+... ++++|++|+..++.+++++||+|+++++.|++....... .....++....++.      .|++
T Consensus        83 a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~  162 (425)
T 3ecd_A           83 AIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYD  162 (425)
T ss_dssp             HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHH
T ss_pred             HHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHH
Confidence            457888999987774 489999999999999999999999999999873211111 11222334444442      3899


Q ss_pred             HHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-----CccccccCCCcEEEECCcccCCc
Q 013019          287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-----LNQKALSLGADLVLHSATKFIGG  361 (451)
Q Consensus       287 ~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-----~~~~pl~~GaDiVv~S~SK~l~G  361 (451)
                      +|++++++.++++|++++|+||  ...++++|.++|+++|++||+|+++..+     ....++.. +|+++.|+||+++|
T Consensus       163 ~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~-~di~~~s~sK~l~g  239 (425)
T 3ecd_A          163 QVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEH-AHVVTSTTHKTLRG  239 (425)
T ss_dssp             HHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGCC
T ss_pred             HHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhc-CcEEEecCCcccCC
Confidence            9999997434899999999985  5679999999999999999999995332     11223333 79999999999977


Q ss_pred             cccceeEEEEeC-HHHHHHHHHHhHhh--CCCccHHHH--HHHH-Hhh-HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          362 HNDVLAGSISGS-GKLVTQIRNLHHVL--GGALNPNAA--YLII-RGM-KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       362 ~gdv~gG~Iv~~-~eli~~lr~~~~~~--G~~ls~~~a--~l~l-rgL-~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +   ++|+++++ +++.+.++......  +....+..+  ..++ ..+ +.+....++..++++.+.+.|++.
T Consensus       240 ~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (425)
T 3ecd_A          240 P---RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG  309 (425)
T ss_dssp             C---SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             C---CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            6   37999987 56767666543221  122222222  1111 122 445566777888888999999874

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.78  E-value=6.8e-18  Score=177.90  Aligned_cols=220  Identities=13%  Similarity=0.132  Sum_probs=157.5

Q ss_pred             hhHHHH----HHHHHhhhCCC----cEEEeCCHHHHHHHHHHHHcc--------CC-----C-eEEEcCCCCcchHHHHH
Q 013019          210 PTTVVV----EEKMSALEGAE----STVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCYRKTRIFIE  267 (451)
Q Consensus       210 pt~~~L----ee~LA~l~gae----~~vv~sSG~aAi~~al~all~--------~G-----D-~VIv~~~~Y~~t~~~l~  267 (451)
                      |....+    .+++++++|.+    ..+++++|++|+..++.++..        +|     + +|+++++.|.+....+.
T Consensus       128 ~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~  207 (504)
T 2okj_A          128 PVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA  207 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHH
Confidence            554444    45668888864    567778888999999888753        57     6 79999999988665443


Q ss_pred             HhhhcCCc-EEEEeCCC-----CHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCC
Q 013019          268 TVLPKMGI-TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA  336 (451)
Q Consensus       268 ~~l~~~Gi-~v~~vd~~-----D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa  336 (451)
                      . +. .|. ++..++.+     |+++|+++|++.     ++++|++++|+||+|.+.|+++|+++|+++|+++++|++|+
T Consensus       208 ~-~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~  285 (504)
T 2okj_A          208 A-LG-FGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWG  285 (504)
T ss_dssp             H-TT-SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTG
T ss_pred             H-cC-CCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhh
Confidence            2 21 233 67777643     899999999751     38999999999999999999999999999999999999987


Q ss_pred             CCCcc-----cccc--CCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHH-hHhh-CC-----------------
Q 013019          337 TPLNQ-----KALS--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNL-HHVL-GG-----------------  389 (451)
Q Consensus       337 ~~~~~-----~pl~--~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~-~~~~-G~-----------------  389 (451)
                      .+...     ..+.  .++|+++.|+||+++++.  .+|+++.++ +++++.... ...+ +.                 
T Consensus       286 ~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~--~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  363 (504)
T 2okj_A          286 GGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL--QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQC  363 (504)
T ss_dssp             GGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCS
T ss_pred             hHHHhCHhhHhhcCCcccCCEEEECchhhcCCCc--ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCC
Confidence            65332     1222  268999999999999764  478877765 455542211 1111 10                 


Q ss_pred             --CccHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          390 --ALNPNAAYLIIRGM--KTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       390 --~ls~~~a~l~lrgL--~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                        .......|++++.+  +.+..++++..++++.+.+.|++.|+++.+
T Consensus       364 ~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  411 (504)
T 2okj_A          364 GRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMV  411 (504)
T ss_dssp             SCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEES
T ss_pred             CCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence              11355556655544  456667888889999999999998887543

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.78  E-value=1.2e-17  Score=176.67  Aligned_cols=215  Identities=16%  Similarity=0.192  Sum_probs=155.2

Q ss_pred             HHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHc-------c-CCC------eEEEcCCCCcchHHHHHHhhhcCCc-
Q 013019          213 VVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-------P-AGG------HIVTTTDCYRKTRIFIETVLPKMGI-  275 (451)
Q Consensus       213 ~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all-------~-~GD------~VIv~~~~Y~~t~~~l~~~l~~~Gi-  275 (451)
                      .+++++|++++|.+  ..+++++|++|+..++.++.       + +||      +|++++..|.+....+.    ..|+ 
T Consensus       151 ~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~----~~g~g  226 (515)
T 2jis_A          151 EEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAA----FLGLG  226 (515)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHH----HTTSC
T ss_pred             HHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHH----HcCCC
Confidence            45667799999974  67778888899988887763       2 576      89999989988765442    3344 


Q ss_pred             --EEEEeCC-----CCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc
Q 013019          276 --TATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA  343 (451)
Q Consensus       276 --~v~~vd~-----~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p  343 (451)
                        ++..++.     .|+++|+++|++.     ++++|++++|+|++|.+.|+++|+++|+++|+++++|++++.+....+
T Consensus       227 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~  306 (515)
T 2jis_A          227 TDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQ  306 (515)
T ss_dssp             GGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCT
T ss_pred             CCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhCh
Confidence              6777764     3799999999751     389999999999999999999999999999999999999876543221


Q ss_pred             -----cc-C-CCcEEEECCcccCCccccceeEEEEeCHH--HHHHHH----HHhHh-----------------hCCCccH
Q 013019          344 -----LS-L-GADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIR----NLHHV-----------------LGGALNP  393 (451)
Q Consensus       344 -----l~-~-GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e--li~~lr----~~~~~-----------------~G~~ls~  393 (451)
                           +. . ++|+++.|++|+++++.  .+|+++.+++  ++++..    .+...                 .+.....
T Consensus       307 ~~~~~~~g~~~aD~v~~s~hK~l~~p~--g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~a  384 (515)
T 2jis_A          307 THRHLLDGIQRADSVAWNPHKLLAAGL--QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDC  384 (515)
T ss_dssp             TTGGGGTTGGGCSEEEECTTSTTCCCS--CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCH
T ss_pred             hhHhhcCCCccCCEEEECcccccCCCC--CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccH
Confidence                 22 2 78999999999998764  3677777655  655421    11100                 0111224


Q ss_pred             HHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          394 NAAYLIIRGM--KTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       394 ~~a~l~lrgL--~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      ...|++++.+  +.+...+++..++++.+.+.|++.|+++.+
T Consensus       385 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  426 (515)
T 2jis_A          385 LKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELV  426 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            5555555433  456667788889999999999998887543

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.78  E-value=7.3e-18  Score=186.89  Aligned_cols=215  Identities=13%  Similarity=0.081  Sum_probs=157.7

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      ........+++.+++++|.+..+++++|+ +|+.+++.+++++||+|++++++|.+.+..+    ...|+++.+++.   
T Consensus       202 ~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~----~~~G~~~v~v~~~~~  277 (755)
T 2vyc_A          202 DHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGL----MLTGAKPVYMVPSRN  277 (755)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHHCCEEEEECCCBC
T ss_pred             cCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeCCCC
Confidence            34566788999999999999888899997 8899999999999999999999999876543    345888777653   


Q ss_pred             -------C-----CHHHHHHhhcCC-CeE--------EEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-
Q 013019          283 -------A-----DMEGLEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-  340 (451)
Q Consensus       283 -------~-----D~d~Le~ai~~~-~tk--------lV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-  340 (451)
                             .     |+++|+++++++ +++        +|++++| ||+|.+.|+++|+++|+++|++|++|++++.... 
T Consensus       278 ~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~  356 (755)
T 2vyc_A          278 RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF  356 (755)
T ss_dssp             TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGG
T ss_pred             ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhccc
Confidence                   2     899999998642 244        8999998 6999999999999999999999999999875321 


Q ss_pred             ------cccccCC--CcE------EEECCcccCCccccceeEEEEeCHH--HH--HHHHHHhHhhC-CCccHHHHHHHHH
Q 013019          341 ------QKALSLG--ADL------VLHSATKFIGGHNDVLAGSISGSGK--LV--TQIRNLHHVLG-GALNPNAAYLIIR  401 (451)
Q Consensus       341 ------~~pl~~G--aDi------Vv~S~SK~l~G~gdv~gG~Iv~~~e--li--~~lr~~~~~~G-~~ls~~~a~l~lr  401 (451)
                            ..++ .|  +|+      +++|+||+++|++  .+|+++.+++  .+  .+++.....+. ..++......+..
T Consensus       357 ~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~a  433 (755)
T 2vyc_A          357 NPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDV  433 (755)
T ss_dssp             CGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHH
T ss_pred             CcccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  1233 57  787      9999999999875  4677766543  22  33333322232 2333322221111


Q ss_pred             hhH---H--HHHHHHHHHHHHHHHHHHHHcCCC
Q 013019          402 GMK---T--LHLRVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       402 gL~---t--l~~Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      +++   .  ...++++..++++.+.+.|++.++
T Consensus       434 A~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~  466 (755)
T 2vyc_A          434 AVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK  466 (755)
T ss_dssp             HHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            222   1  345778888899999999987665

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.78  E-value=7.4e-18  Score=176.50  Aligned_cols=218  Identities=15%  Similarity=0.153  Sum_probs=154.8

Q ss_pred             chhHHHHHH----HHHhhhCCCc-----------EEEeCCHHHHHHHHHHHHccC---------CC--------e--EEE
Q 013019          209 NPTTVVVEE----KMSALEGAES-----------TVIMASGMSASTVMLLALVPA---------GG--------H--IVT  254 (451)
Q Consensus       209 npt~~~Lee----~LA~l~gae~-----------~vv~sSG~aAi~~al~all~~---------GD--------~--VIv  254 (451)
                      .|....+|+    ++++++|.+.           .+++++|++|+..++.++...         ||        +  |++
T Consensus       108 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~  187 (486)
T 1js3_A          108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA  187 (486)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred             ChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEE
Confidence            455555554    5577778642           678889999998888776421         43        4  788


Q ss_pred             cCCCCcchHHHHHHhhhcCCcEEEEeCC-----CCHHHHHHhhcCCCe------EEEEEeCCCCCccccccHHHHHHHHH
Q 013019          255 TTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNNNV------SLFFTESPTNPFLRCVDVKLVSDLCH  323 (451)
Q Consensus       255 ~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----~D~d~Le~ai~~~~t------klV~lesPsNPtG~v~DL~~IaelA~  323 (451)
                      +.+.|.+...    .+...|++++.++.     .|+++|+++|+++ +      .+|++++|+||+|.+.|+++|+++|+
T Consensus       188 s~~~h~s~~~----~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~-~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~  262 (486)
T 1js3_A          188 SDQAHSSVER----AGLIGGVKLKAIPSDGKFAMRASALQEALERD-KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH  262 (486)
T ss_dssp             ETTCCHHHHH----HHHHHTCEEEEECCCTTSCCCHHHHHHHHHHH-HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             CCCCcHHHHH----HHHhCCCceEEeecCCCCCCCHHHHHHHHHHH-HhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence            9999987553    34456888888875     3899999999764 4      38999999999999999999999999


Q ss_pred             hcCCEEEEecCCCCCCcc----ccc---cCCCcEEEECCcccCCccccceeEEEEeCH-HH-HHHHHHHhHh--------
Q 013019          324 KKGAIVCIDGTFATPLNQ----KAL---SLGADLVLHSATKFIGGHNDVLAGSISGSG-KL-VTQIRNLHHV--------  386 (451)
Q Consensus       324 ~~g~~lVVD~tfa~~~~~----~pl---~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-el-i~~lr~~~~~--------  386 (451)
                      ++|+++++|++|+.+...    +.+   -.++|+++.|+||+++++.  .+|+++.++ ++ .+.+.....+        
T Consensus       263 ~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~--~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~  340 (486)
T 1js3_A          263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS  340 (486)
T ss_dssp             HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC------------C
T ss_pred             HcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc--ceEEEEEeCHHHHHHHhcCCchhhCCCcccc
Confidence            999999999998764321    111   1268999999999998763  467777754 33 3333110000        


Q ss_pred             ------------hCCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          387 ------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       387 ------------~G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                                  .+........|.+++  +.+.+..++++..++++.+.+.|++.|+++.+
T Consensus       341 ~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  401 (486)
T 1js3_A          341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVC  401 (486)
T ss_dssp             CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEC
T ss_pred             cCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence                        011223445555544  45677888888999999999999999888654

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.77  E-value=6.6e-18  Score=170.80  Aligned_cols=217  Identities=16%  Similarity=0.138  Sum_probs=150.7

Q ss_pred             CchhHHHHH----HHHHhhhCCCcEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCC--cEEEEe
Q 013019          208 GNPTTVVVE----EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVI  280 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~G--i~v~~v  280 (451)
                      +++....|+    +++++++|.+...+ +++|++|+..++.+++++||+|+++++.|+.+..... .+...|  +++..+
T Consensus        63 ~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~~~~  141 (405)
T 2vi8_A           63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-PVNFSGVQYNFVAY  141 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-TTSHHHHHSEEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-hhhhccceeEEEec
Confidence            446666666    59999999876654 6899999999999999999999999999987542100 001112  244444


Q ss_pred             C------CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC---cccccc-CCCcE
Q 013019          281 D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL---NQKALS-LGADL  350 (451)
Q Consensus       281 d------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~---~~~pl~-~GaDi  350 (451)
                      +      ..|+++|++++++.++++|++ +|+|+ |...|+++|.++|+++|+++|+|++++.+.   ...+.. .+.|+
T Consensus       142 ~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di  219 (405)
T 2vi8_A          142 GVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHF  219 (405)
T ss_dssp             CBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSE
T ss_pred             ccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCE
Confidence            3      247999999997523888888 55554 566789999999999999999999986321   111111 15799


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhC-CCccHHHHHH---HHHhh--HHHHHHHHHHHHHHHHHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAYL---IIRGM--KTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G-~~ls~~~a~l---~lrgL--~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      ++.|++|+++|+.   ||+++++++++++++.....+. +..++.....   +++.+  +.+....++..++++.+.+.|
T Consensus       220 ~~~s~sK~~~g~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L  296 (405)
T 2vi8_A          220 VTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL  296 (405)
T ss_dssp             EEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCCCCC---CeEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999998654   5999999999888876543222 2223332222   22221  244556777888899999999


Q ss_pred             HcCCCeE
Q 013019          425 EAHPKVL  431 (451)
Q Consensus       425 ~~~p~V~  431 (451)
                      ++. ++.
T Consensus       297 ~~~-g~~  302 (405)
T 2vi8_A          297 QNE-GFT  302 (405)
T ss_dssp             HHT-TCE
T ss_pred             HhC-CCe
Confidence            887 553

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.77  E-value=1.6e-17  Score=171.00  Aligned_cols=227  Identities=13%  Similarity=0.072  Sum_probs=153.8

Q ss_pred             CccccCCCchhHHHHHHHHHhhh--CC-CcEEEeCCHHHHHHHHHHHH--ccCCCeEEEcCCCCcchHHHHHHhhhc---
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALE--GA-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPK---  272 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~--ga-e~~vv~sSG~aAi~~al~al--l~~GD~VIv~~~~Y~~t~~~l~~~l~~---  272 (451)
                      .+.+.++.++...+|+++|++++  +. ++.+++++|++|+..++.++  ..++++||+.++.|.+...........   
T Consensus        77 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  156 (439)
T 3dxv_A           77 GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQ  156 (439)
T ss_dssp             CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC------
T ss_pred             CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCch
Confidence            34456778899999999999998  44 57888899999999999875  346788888888886643222111000   


Q ss_pred             --------CCcEEEEeCCC----------CHHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCC
Q 013019          273 --------MGITATVIDPA----------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGA  327 (451)
Q Consensus       273 --------~Gi~v~~vd~~----------D~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~  327 (451)
                              ....+.+++..          |+++|+++++   ++++++|++|.++|++|.+.+    +++|.++|++||+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~  236 (439)
T 3dxv_A          157 ADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGI  236 (439)
T ss_dssp             -------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred             hhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence                    00011222322          5899999993   335899999999999999988    9999999999999


Q ss_pred             EEEEecCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHH
Q 013019          328 IVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR  401 (451)
Q Consensus       328 ~lVVD~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lr  401 (451)
                      +||+||+|...      ..........|++  |++|.+++ | .++|++++++++++.++........ .++..+..++.
T Consensus       237 ~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G-~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~a  311 (439)
T 3dxv_A          237 LVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-G-LPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLA  311 (439)
T ss_dssp             EEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-T-SCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHH
T ss_pred             EEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-C-cceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHH
Confidence            99999998632      1112222335666  78999986 4 4789999999888776654322233 56766666555


Q ss_pred             hhHHHH--HHHHHHHHHHHHHHHHHH----cCCCeEE
Q 013019          402 GMKTLH--LRVQQQNSTALRMAEILE----AHPKVLL  432 (451)
Q Consensus       402 gL~tl~--~Rl~~~~~nA~~Lae~L~----~~p~V~~  432 (451)
                      .++.+.  ..+++..++.+.+.+.|+    ++|.+..
T Consensus       312 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  348 (439)
T 3dxv_A          312 VLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGD  348 (439)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            555432  234555566666655554    4566544

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.77  E-value=3.1e-18  Score=177.38  Aligned_cols=206  Identities=12%  Similarity=0.105  Sum_probs=147.9

Q ss_pred             HHHHHHHHHhhhC--------CCcEEEeCCHHHHHHHHHHHH--------ccCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          212 TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       212 ~~~Lee~LA~l~g--------ae~~vv~sSG~aAi~~al~al--------l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      ...|++.|+++++        .++.++++++++++.+++.++        +++||+|+++.|.|......+    +..|.
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~----~~~g~  177 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT----KYFDK  177 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH----HHSCB
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHH----HHcCC
Confidence            5788999988875        134444445559999999999        899999999999998766444    33454


Q ss_pred             EEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEEC
Q 013019          276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHS  354 (451)
Q Consensus       276 ~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S  354 (451)
                      ++.... .|+++|++++++ ++++|++++|+||||.+.+ +    +++  ++..+.|+.+..+ .....+..+.++++.|
T Consensus       178 ~~~~~~-~d~~~l~~~~~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S  248 (427)
T 2hox_A          178 KGYVWA-GNAANYVNVSNP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYKADEDILLFT  248 (427)
T ss_dssp             TTEEEE-EEGGGGTTCSCG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEE
T ss_pred             eeeeec-CCHHHHHHhhcC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccCCCceEEEEe
Confidence            433222 367888888876 4899999999999999999 4    233  5678999886432 1111122467999999


Q ss_pred             CcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---------------HHHHHHHHHHHHH
Q 013019          355 ATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---------------LHLRVQQQNSTAL  418 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---------------l~~Rl~~~~~nA~  418 (451)
                      +||.++.+| .++|++++ +++++++++..+.......+...+.++...|+.               +....++..++.+
T Consensus       249 ~SK~~g~~G-~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
T 2hox_A          249 MSKFTGHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV  327 (427)
T ss_dssp             HHHHTSCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred             ChhcCCCCC-ceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHH
Confidence            999998776 57889988 589999999887766555666665554444443               2223456667788


Q ss_pred             HHHHHHHcCCCeE
Q 013019          419 RMAEILEAHPKVL  431 (451)
Q Consensus       419 ~Lae~L~~~p~V~  431 (451)
                      .+.+.|+++|++.
T Consensus       328 ~l~~~L~~~~g~~  340 (427)
T 2hox_A          328 NITALLDQSDRFS  340 (427)
T ss_dssp             HHHHHHTTSSSEE
T ss_pred             HHHHHHHhCcCcc
Confidence            8999999887763

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.76  E-value=3.6e-18  Score=177.95  Aligned_cols=165  Identities=13%  Similarity=0.140  Sum_probs=123.9

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      +....++.+...++++++++ +|.++.+++++|+ +|+.+++.+++++||+|++++++|.++...+.    ..|.++.++
T Consensus        49 ~d~~~~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~----~~G~~~~~v  123 (446)
T 2x3l_A           49 LDDLHHPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALD----ISQQEGHFI  123 (446)
T ss_dssp             SCCTTSCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH----HHTCCEEEC
T ss_pred             CccccCcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHH----HcCCeEEEE
Confidence            34444567778999999999 9987777877776 89999999999999999999999998765442    245555554


Q ss_pred             CC-----------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-----ccccc
Q 013019          281 DP-----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKAL  344 (451)
Q Consensus       281 d~-----------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-----~~~pl  344 (451)
                      +.           .|+++|   +.+ ++++|++++| |++|.+.|+++|.++|+++|+++|+|++++..+     .....
T Consensus       124 ~~~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~~-n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~  198 (446)
T 2x3l_A          124 ETHQSPLTNHYNKVNLSRL---NND-GHKLVVLTYP-NYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTL  198 (446)
T ss_dssp             EEEECTTTSSEEEEEC-----------CCEEEEESS-CTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGG
T ss_pred             eCeeccccCcCCCCCHHHH---cCC-CceEEEEECC-CCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChH
Confidence            32           134555   344 4899999884 569999999999999999999999999987522     12334


Q ss_pred             cCCCcEEEECCcccCCccccceeEEEEeCHHHHH
Q 013019          345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT  378 (451)
Q Consensus       345 ~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~  378 (451)
                      .+|+|+++.|+||+++++.  .+|++++++++++
T Consensus       199 ~~g~Di~~~S~~K~l~~~~--g~g~l~~~~~~i~  230 (446)
T 2x3l_A          199 NYQADYVVQSFHKTLPALT--MGSVLYIHKNAPY  230 (446)
T ss_dssp             GGTCSEEEECHHHHSSSCT--TCEEEEEETTCTT
T ss_pred             HcCCCEEEECCcccccccc--ccEEEEEcCCcCC
Confidence            5689999999999777653  3688888776644

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.75  E-value=4.3e-17  Score=166.35  Aligned_cols=216  Identities=14%  Similarity=0.151  Sum_probs=144.4

Q ss_pred             cCCCchhHHHHHHHHHhhh-C-C-CcEEEeCCHHHHHHHHHH---HHccCCCeEEEcCCCCcchHH-HHHHh-hh-----
Q 013019          205 GRYGNPTTVVVEEKMSALE-G-A-ESTVIMASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRI-FIETV-LP-----  271 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~-g-a-e~~vv~sSG~aAi~~al~---all~~GD~VIv~~~~Y~~t~~-~l~~~-l~-----  271 (451)
                      .++.++...+|+++|++++ | . ++.+++++|++|+..++.   ++.++| +|++.++.|.+... .+... ..     
T Consensus        79 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~  157 (426)
T 1sff_A           79 QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSA  157 (426)
T ss_dssp             TTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTT
T ss_pred             cccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCcccccc
Confidence            3456788899999999999 5 3 556677788899999987   667776 89999999977443 22211 00     


Q ss_pred             cCCc---EEEEeCCC----------CHHHHHHhhcC----CCeEEEEEe-CCCCCcccccc----HHHHHHHHHhcCCEE
Q 013019          272 KMGI---TATVIDPA----------DMEGLEAALNN----NNVSLFFTE-SPTNPFLRCVD----VKLVSDLCHKKGAIV  329 (451)
Q Consensus       272 ~~Gi---~v~~vd~~----------D~d~Le~ai~~----~~tklV~le-sPsNPtG~v~D----L~~IaelA~~~g~~l  329 (451)
                      .++.   .+..++..          |+++|++++++    .++++|+++ +++| ||...+    +++|.++|++||++|
T Consensus       158 ~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~l  236 (426)
T 1sff_A          158 GMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIML  236 (426)
T ss_dssp             TSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEE
T ss_pred             ccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEE
Confidence            1111   14334331          68899988862    248888885 3567 997777    999999999999999


Q ss_pred             EEecCCCCCCc------cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh
Q 013019          330 CIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM  403 (451)
Q Consensus       330 VVD~tfa~~~~------~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL  403 (451)
                      |+|++|.....      ........|++  |+||.+++ | ++.|++++++++++.++..........++..+..+...|
T Consensus       237 i~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal  312 (426)
T 1sff_A          237 IADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-G-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVL  312 (426)
T ss_dssp             EEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-S-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHH
T ss_pred             EEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-C-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHH
Confidence            99999874211      11122235655  88999997 5 678999999888776653222222345666666666555


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHHHc
Q 013019          404 KTLHL--RVQQQNSTALRMAEILEA  426 (451)
Q Consensus       404 ~tl~~--Rl~~~~~nA~~Lae~L~~  426 (451)
                      +.+..  ..++..++.+.+.+.|++
T Consensus       313 ~~~~~~~~~~~~~~~~~~l~~~l~~  337 (426)
T 1sff_A          313 KVFEQENLLQKANDLGQKLKDGLLA  337 (426)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            54432  345555666677776654

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.74  E-value=3.3e-17  Score=180.05  Aligned_cols=213  Identities=12%  Similarity=0.149  Sum_probs=156.9

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC---
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~---  283 (451)
                      +.....++|+.+|+++|+++++++++|+ .|+..++.+++++||+|++++++|.+....    +...|.++.+++..   
T Consensus       193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~~~~  268 (715)
T 3n75_A          193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPTRNA  268 (715)
T ss_dssp             TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCCBCT
T ss_pred             CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEeccccc
Confidence            4556889999999999999999999996 899999999999999999999999987753    44568887777632   


Q ss_pred             ------------CHHHHHHhhcCC-CeE---EEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-------
Q 013019          284 ------------DMEGLEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------  340 (451)
Q Consensus       284 ------------D~d~Le~ai~~~-~tk---lV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-------  340 (451)
                                  |+++|+++++++ +++   +|++++| |++|.+.|+++|.++|++++  +++|++++..+.       
T Consensus       269 ~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~  345 (715)
T 3n75_A          269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG  345 (715)
T ss_dssp             TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT
T ss_pred             cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccc
Confidence                        799999999742 244   8999999 89999999999999998764  799999876531       


Q ss_pred             cccccCC--CcEE---EECCcccCCccccceeEEEEeCHHH-HHHHHHHhHhhC-CCccHHHHHHHHHh---hH--HHHH
Q 013019          341 QKALSLG--ADLV---LHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLG-GALNPNAAYLIIRG---MK--TLHL  408 (451)
Q Consensus       341 ~~pl~~G--aDiV---v~S~SK~l~G~gdv~gG~Iv~~~el-i~~lr~~~~~~G-~~ls~~~a~l~lrg---L~--tl~~  408 (451)
                      ..++..|  +|++   ++|+||++++..  .+|++..++++ .++++....... +.++......+..+   ++  .-..
T Consensus       346 ~~al~~g~~aD~vii~~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~  423 (715)
T 3n75_A          346 KCGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKR  423 (715)
T ss_dssp             SSTTSSSCCTTCEEEEEECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHH
T ss_pred             ccccccCcCCCEEEEEEecccccccCCC--CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHH
Confidence            1233334  6866   999999999864  37787765442 234444444443 33444332222222   22  2244


Q ss_pred             HHHHHHHHHHHHHHHHHcCCC
Q 013019          409 RVQQQNSTALRMAEILEAHPK  429 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~p~  429 (451)
                      ++++..++++.+.+.|++.++
T Consensus       424 ~~~~l~~~a~~~r~~L~~i~~  444 (715)
T 3n75_A          424 LINGSIERAIKFRKEIKRLRT  444 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            678888899999998887653

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.74  E-value=1.3e-16  Score=163.77  Aligned_cols=225  Identities=16%  Similarity=0.134  Sum_probs=150.2

Q ss_pred             ccCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHc---c----CCCeEEEcCCCCcchHHHHHHhhh---
Q 013019          204 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETVLP---  271 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all---~----~GD~VIv~~~~Y~~t~~~l~~~l~---  271 (451)
                      +++|.++...+++++|+++++  .++.+++++|++|+..++.++.   +    +||+|++.++.|.+..........   
T Consensus        80 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~  159 (429)
T 1s0a_A           80 FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDN  159 (429)
T ss_dssp             CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCch
Confidence            346677888899999999995  4677778889999999987653   2    589999999998774322111100   


Q ss_pred             ---------cCCcEEEEeC---------CCCHHHHHHhhcC--CCeEEEEEeCC-CCCcccccc----HHHHHHHHHhcC
Q 013019          272 ---------KMGITATVID---------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKG  326 (451)
Q Consensus       272 ---------~~Gi~v~~vd---------~~D~d~Le~ai~~--~~tklV~lesP-sNPtG~v~D----L~~IaelA~~~g  326 (451)
                               ..++....++         ..|+++|++++++  .++++|+++.+ +||+|.+.+    +++|.++|+++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~  239 (429)
T 1s0a_A          160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG  239 (429)
T ss_dssp             TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred             hhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence                     0123322222         2468899998873  24788887655 799998776    999999999999


Q ss_pred             CEEEEecCCCCC-C-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-----HhhCCCccHHH
Q 013019          327 AIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGALNPNA  395 (451)
Q Consensus       327 ~~lVVD~tfa~~-~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-----~~~G~~ls~~~  395 (451)
                      +++|+|++|... .     .........|++  |++|.++++ -.+.|++++++++++.++...     .......++..
T Consensus       240 ~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~G-~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~  316 (429)
T 1s0a_A          240 ILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTGG-TMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA  316 (429)
T ss_dssp             CEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTS-SSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred             CEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccCC-CccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHH
Confidence            999999998632 1     112223346766  578998862 135889999999888776521     11112345666


Q ss_pred             HHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHcC---CCeE
Q 013019          396 AYLIIRGMKTLH--LRVQQQNSTALRMAEILEAH---PKVL  431 (451)
Q Consensus       396 a~l~lrgL~tl~--~Rl~~~~~nA~~Lae~L~~~---p~V~  431 (451)
                      +..+...++.+.  ...++..++.+.+.+.|++.   |.+.
T Consensus       317 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~  357 (429)
T 1s0a_A          317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVA  357 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEE
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence            555555555432  23456667778888888763   5554

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.74  E-value=2.8e-16  Score=162.36  Aligned_cols=218  Identities=15%  Similarity=0.176  Sum_probs=149.0

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcchHH-HHHHhh----
Q 013019          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRI-FIETVL----  270 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t~~-~l~~~l----  270 (451)
                      ++..+...+|+++|+++++  .+..+++++|++|+..++.++..        +||+||+.++.|.+... .+...-    
T Consensus        89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~  168 (449)
T 3a8u_X           89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGN  168 (449)
T ss_dssp             SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHH
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhh
Confidence            5677888999999999985  36778888999999999987764        68999999999987432 222110    


Q ss_pred             -hc-----CCcEEEEeCC--------CC--------HHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHHHHH
Q 013019          271 -PK-----MGITATVIDP--------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDL  321 (451)
Q Consensus       271 -~~-----~Gi~v~~vd~--------~D--------~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~Iael  321 (451)
                       ..     .++....++.        .|        +++|++++++   .++++|++|..+|++|.+.+    +++|.++
T Consensus       169 ~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l  248 (449)
T 3a8u_X          169 RKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREI  248 (449)
T ss_dssp             HTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHH
Confidence             00     1232221211        15        8999999872   24788888766678998888    9999999


Q ss_pred             HHhcCCEEEEecCCCCC-Ccc-----ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-------hhC
Q 013019          322 CHKKGAIVCIDGTFATP-LNQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLG  388 (451)
Q Consensus       322 A~~~g~~lVVD~tfa~~-~~~-----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-------~~G  388 (451)
                      |++||++||+|+++... ...     .......|++  |++|.+++ |.++.|++++++++++.++....       ..+
T Consensus       249 ~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~  325 (449)
T 3a8u_X          249 CNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHG  325 (449)
T ss_dssp             HHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCC
T ss_pred             HHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCceEEEEECHHHHHHhhccCccccccccccc
Confidence            99999999999998532 111     1122345766  78899986 32457888888888888765310       111


Q ss_pred             --CCccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc
Q 013019          389 --GALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEA  426 (451)
Q Consensus       389 --~~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~~  426 (451)
                        ...++..+..+...++.+..  .+++..++...+.+.|++
T Consensus       326 ~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~  367 (449)
T 3a8u_X          326 YTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHG  367 (449)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence              23466666665656655432  456667777888888876

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.74  E-value=3.5e-16  Score=162.73  Aligned_cols=230  Identities=13%  Similarity=0.096  Sum_probs=152.0

Q ss_pred             ccccCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcchHHHHHHh--
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV--  269 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t~~~l~~~--  269 (451)
                      +.+.++.++...+|+++|+++.+  .+..++++||++|+..++..++.        .+++||+.++.|.+........  
T Consensus        86 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~  165 (459)
T 4a6r_A           86 NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGG  165 (459)
T ss_dssp             CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcC
Confidence            44556788999999999999985  46788888999999999998875        5789999999998743222111  


Q ss_pred             -------hhcCCcEEEEeCCC---------C--------HHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHH
Q 013019          270 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV  318 (451)
Q Consensus       270 -------l~~~Gi~v~~vd~~---------D--------~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~I  318 (451)
                             .......+.+++..         |        +++|++++++   +++++|++|.++|++|.+.+    +++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l  245 (459)
T 4a6r_A          166 MKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEI  245 (459)
T ss_dssp             CTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred             ChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence                   01111123334321         2        7888888862   34788888877777777776    9999


Q ss_pred             HHHHHhcCCEEEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHH---HhHhhCC
Q 013019          319 SDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHHVLGG  389 (451)
Q Consensus       319 aelA~~~g~~lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~---~~~~~G~  389 (451)
                      .++|++||++||+||++... ..     ........|+++  ++|.++|.+ .+.|++++++++++.+..   .......
T Consensus       246 ~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~-~~lg~v~~~~~i~~~~~~~~~~~~~~t~  322 (459)
T 4a6r_A          246 ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGY-LPIGAVFVGKRVAEGLIAGGDFNHGFTY  322 (459)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCC-CCccceeeCHHHHHHhhcCCCcccCCCC
Confidence            99999999999999997632 11     111223356665  679988743 357889999999988872   2221122


Q ss_pred             CccHHHHHHHHHhhHHHHH--HHHHHH-HHHHHHHHH----HHcCCCeEEEe
Q 013019          390 ALNPNAAYLIIRGMKTLHL--RVQQQN-STALRMAEI----LEAHPKVLLLF  434 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~--Rl~~~~-~nA~~Lae~----L~~~p~V~~V~  434 (451)
                      ..++..+..++..|+.+..  .+++.. ++...+.+.    |.++|.+..+.
T Consensus       323 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  374 (459)
T 4a6r_A          323 SGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVR  374 (459)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            3456666666666654422  234444 444444444    45667666543

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.73  E-value=1e-17  Score=167.47  Aligned_cols=204  Identities=12%  Similarity=0.067  Sum_probs=140.9

Q ss_pred             hHHHHHHHHHhhhCCC---cEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          211 TTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae---~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ..+++++++++++|.+   +.+++ ++|++|+..++.+++++||+|++.++.|.+.+  +...++..| ++++++.    
T Consensus        50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~  126 (362)
T 2c0r_A           50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEAS  126 (362)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGG
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEeccccc
Confidence            4678999999999975   44566 46669999999999999999988776544432  113344557 6665532    


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCcccc-ccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v-~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~S  356 (451)
                           .|.++++  +++ +|++|++++|+||||.+ .|+++|      +|+++|+|++++.+...-.+.. .|+++.|+|
T Consensus       127 ~~~~~~~~~~~~--i~~-~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~-~d~~~~s~~  196 (362)
T 2c0r_A          127 NYMTLPKLQEIQ--LQD-NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQ-FGLVYAGAQ  196 (362)
T ss_dssp             TTCSCCCGGGCC--CCT-TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGG-CSEEEEETT
T ss_pred             ccccCCCHHHcc--cCC-CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchhH-CcEEEEecc
Confidence                 1333332  565 49999999999999996 677776      8999999999876532211221 489999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHH------------hHhhCCCccHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNL------------HHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~------------~~~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA~  418 (451)
                      |+++..|   .|+++++++++++++..            ......+.+....+.+..+++.      +..+.++..++++
T Consensus       197 K~~g~~G---~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~  273 (362)
T 2c0r_A          197 KNLGPSG---VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKAS  273 (362)
T ss_dssp             TTTCCSS---CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccCcC---cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9997655   69999988876655421            1112234555554444444432      4556777788889


Q ss_pred             HHHHHHHcCCCe
Q 013019          419 RMAEILEAHPKV  430 (451)
Q Consensus       419 ~Lae~L~~~p~V  430 (451)
                      .+.+.|++++++
T Consensus       274 ~l~~~L~~~~~~  285 (362)
T 2c0r_A          274 LIYDAIDQSGGF  285 (362)
T ss_dssp             HHHHHHHTSTTS
T ss_pred             HHHHHHHHcCCc
Confidence            999999988643

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.73  E-value=1.1e-16  Score=165.64  Aligned_cols=216  Identities=18%  Similarity=0.174  Sum_probs=141.3

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccC-----C----CeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA-----G----GHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~-----G----D~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      ..+...+|+++|+++++.+++++++||++|+.+++.+++++     |    |+|++. ..|+.++.....   ..|..+.
T Consensus        72 ~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~---~~~~~~~  147 (467)
T 2oqx_A           72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQ---INGCTVR  147 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHH---HTTCEEE
T ss_pred             cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccchhhhh---ccCccee
Confidence            35778899999999999998999999999999999999888     9    998876 455444322211   1122211


Q ss_pred             E------e--C-------CCCHHHHHHhhcC---CCeEEEEEeCCCCCc-cccc---cHHHHHHHHHhcCCEEEEecCCC
Q 013019          279 V------I--D-------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCV---DVKLVSDLCHKKGAIVCIDGTFA  336 (451)
Q Consensus       279 ~------v--d-------~~D~d~Le~ai~~---~~tklV~lesPsNPt-G~v~---DL~~IaelA~~~g~~lVVD~tfa  336 (451)
                      .      +  +       ..|+++|++++++   .++++|++++|+||+ |.+.   ++++|.++|++||++||+|++++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~  227 (467)
T 2oqx_A          148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence            1      1  1       1389999999973   248999999999998 7765   47899999999999999996532


Q ss_pred             C--------------CCcccccc----CCCcEEEECCcccCCccccceeEEEEeCHH-HHHHHHHHhHh---hC-----C
Q 013019          337 T--------------PLNQKALS----LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHV---LG-----G  389 (451)
Q Consensus       337 ~--------------~~~~~pl~----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e-li~~lr~~~~~---~G-----~  389 (451)
                      .              +.....+.    .++|+++.|++|+++++   .||+++++++ +++.+...+..   .+     .
T Consensus       228 ~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (467)
T 2oqx_A          228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG  304 (467)
T ss_dssp             HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred             hhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHHHHHHhhhccCCccccc
Confidence            2              11111111    24788999999999765   3688888766 44444333221   11     1


Q ss_pred             CccHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          390 ALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl--~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      .........+..+++..  ..++++..++++.+.+.|++. ++.
T Consensus       305 ~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~  347 (467)
T 2oqx_A          305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVV  347 (467)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred             chhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCe
Confidence            12222222222233322  235566678888999999886 443

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.73  E-value=5.8e-16  Score=159.75  Aligned_cols=216  Identities=16%  Similarity=0.085  Sum_probs=142.8

Q ss_pred             ccccCCCchhHHHHHHHHHhhh-C---C----Cc--EEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHh
Q 013019          202 FEYGRYGNPTTVVVEEKMSALE-G---A----ES--TVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV  269 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~-g---a----e~--~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~  269 (451)
                      +.|+-  .....+|++.+++++ +   .    ++  .+++++|++|+..++.+++.  + |+|++++|.|......    
T Consensus        66 ~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~----  138 (405)
T 3k7y_A           66 KPYLL--GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNM----  138 (405)
T ss_dssp             CCCCT--TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHH----
T ss_pred             CCCCC--CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHH----
Confidence            45653  233445777777654 2   1    22  34555666999999988887  8 9999999999986643    


Q ss_pred             hhcCCcEEEEeCC-------CCHHHHHHhhcC-CCeEEEEEeCC-CCCcccccc---HHHHHHHHHhcCCEEEEecCCCC
Q 013019          270 LPKMGITATVIDP-------ADMEGLEAALNN-NNVSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT  337 (451)
Q Consensus       270 l~~~Gi~v~~vd~-------~D~d~Le~ai~~-~~tklV~lesP-sNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~  337 (451)
                      ++..|.++..++.       .|+++|++++++ .++++|++++| +||||.+++   +++|+++|++||+++|+|++|..
T Consensus       139 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~  218 (405)
T 3k7y_A          139 IESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQG  218 (405)
T ss_dssp             HHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTT
T ss_pred             HHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCccc
Confidence            4556777766643       378999999864 23688888766 899999986   66788899999999999999875


Q ss_pred             CCccc------cc----cC-CCcEEEECCcccCCccccceeEEEE---eCHHHHHHHHH----HhHhhCCCccHHHHHHH
Q 013019          338 PLNQK------AL----SL-GADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIRN----LHHVLGGALNPNAAYLI  399 (451)
Q Consensus       338 ~~~~~------pl----~~-GaDiVv~S~SK~l~G~gdv~gG~Iv---~~~eli~~lr~----~~~~~G~~ls~~~a~l~  399 (451)
                      .....      ++    .. ..-+++.|+||.++.+| .+.||++   .++++++++..    .......+.+.+.+.++
T Consensus       219 l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~  297 (405)
T 3k7y_A          219 FGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRIL  297 (405)
T ss_dssp             TSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             ccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence            43210      11    11 23588999999998777 4677764   36777665543    22222223344443333


Q ss_pred             HHhh----------HHHHHHHHHHHHHHHHHHHHHH
Q 013019          400 IRGM----------KTLHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       400 lrgL----------~tl~~Rl~~~~~nA~~Lae~L~  425 (451)
                      ...+          +.+....++..++...+.+.|+
T Consensus       298 ~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~  333 (405)
T 3k7y_A          298 CQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE  333 (405)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222          2233334556778888899998

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.73  E-value=3.3e-17  Score=175.27  Aligned_cols=150  Identities=16%  Similarity=0.277  Sum_probs=113.6

Q ss_pred             cEEEeCCHH-HHHHHHHHH-----HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-------CCHHHHHHhhc
Q 013019          227 STVIMASGM-SASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALN  293 (451)
Q Consensus       227 ~~vv~sSG~-aAi~~al~a-----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-------~D~d~Le~ai~  293 (451)
                      +.+++++|. +++..++.+     ++++||+|++++|.|.+.....  .+...|+++..++.       .|+++|+++++
T Consensus       166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~  243 (546)
T 2zy4_A          166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP--ELAQYALEEVAINADPSLNWQYPDSELDKLKD  243 (546)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH--HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred             ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH--HHcCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence            455555555 899988887     4789999999999998865432  13445677666642       47899998886


Q ss_pred             CCCeEEEEEeCCCCCcccccc---HHHHHHHH--HhcCCEEEEecCCCCCCc--ccccc--CCCcEEEECCcccCCcccc
Q 013019          294 NNNVSLFFTESPTNPFLRCVD---VKLVSDLC--HKKGAIVCIDGTFATPLN--QKALS--LGADLVLHSATKFIGGHND  364 (451)
Q Consensus       294 ~~~tklV~lesPsNPtG~v~D---L~~IaelA--~~~g~~lVVD~tfa~~~~--~~pl~--~GaDiVv~S~SK~l~G~gd  364 (451)
                      + ++++|++++|+||||.+++   +++|.++|  +++|++||+|++|+....  .....  .+.++++.|+||.++.+| 
T Consensus       244 ~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G-  321 (546)
T 2zy4_A          244 P-AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG-  321 (546)
T ss_dssp             T-TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-
T ss_pred             C-CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-
Confidence            6 4999999999999999986   56788888  789999999999875432  11111  246799999999998776 


Q ss_pred             ceeEEEEeCHH-HHHHH
Q 013019          365 VLAGSISGSGK-LVTQI  380 (451)
Q Consensus       365 v~gG~Iv~~~e-li~~l  380 (451)
                      .+.|+++++++ +++++
T Consensus       322 lRiG~~~~~~~~l~~~l  338 (546)
T 2zy4_A          322 WRLGVVAAHQQNVFDLA  338 (546)
T ss_dssp             GCEEEEEEESSCHHHHH
T ss_pred             cceEEEEECCHHHHHHH
Confidence            56889888764 77766

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.73  E-value=6.9e-18  Score=167.97  Aligned_cols=204  Identities=10%  Similarity=0.081  Sum_probs=140.7

Q ss_pred             hHHHHHHHHHhhhCCC--cEE-EeCCH-HHHHHHHHHHHccC---CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          211 TTVVVEEKMSALEGAE--STV-IMASG-MSASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae--~~v-v~sSG-~aAi~~al~all~~---GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ..+++++++++++|.+  +.+ +++++ ++|+.+++.+++.+   ||+|+++.+.|..    . ..+...| ++.+++. 
T Consensus        49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~----~-~~~~~~g-~~~~v~~~  122 (360)
T 1w23_A           49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKA----L-KEAKLLG-ETHIAAST  122 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHH----H-HHHHTTS-EEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHH----H-HHHHHhC-CeEEeecc
Confidence            4678999999999975  344 45555 79999999998865   5667766544432    1 2245568 7776642 


Q ss_pred             -----CCHHHHHH-hhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEA-ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~-ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~S  356 (451)
                           .|+++|++ ++++ ++++|++++|+||||.+.+  +   +++++|+++|+|++++.+.....+.. .|+++.|+|
T Consensus       123 ~~~~~~d~~~l~~~~i~~-~~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~~~~~~~-~di~~~s~s  195 (360)
T 1w23_A          123 KANSYQSIPDFSEFQLNE-NDAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSRPLKVNQ-FGMIYAGAQ  195 (360)
T ss_dssp             GGGTSCSCCCGGGCCCCT-TEEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSSCCCGGG-CSEEEEETT
T ss_pred             cccCcCCccchHhhccCC-CCCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCCCcCccc-CCEEEEEcc
Confidence                 36778888 8876 4999999999999999977  3   33389999999999876532212221 389999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHHHHHhH------------hhCCCccHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQIRNLHH------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~lr~~~~------------~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA~  418 (451)
                      |.+++.|   .|+++++++++++++....            ....+.+....+.+..+++.      +..+.++..++++
T Consensus       196 K~~~~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  272 (360)
T 1w23_A          196 KNLGPSG---VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAK  272 (360)
T ss_dssp             TTTSCTT---CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             cccCCCC---cEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9998665   6888888887765543210            11123344444444444433      4455777788899


Q ss_pred             HHHHHHHcCCCe
Q 013019          419 RMAEILEAHPKV  430 (451)
Q Consensus       419 ~Lae~L~~~p~V  430 (451)
                      .+.+.|++.+++
T Consensus       273 ~l~~~L~~~~~~  284 (360)
T 1w23_A          273 IIYDTIDESNGF  284 (360)
T ss_dssp             HHHHHHHTTTTS
T ss_pred             HHHHHHHHccCc
Confidence            999999988754

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.73  E-value=1.3e-16  Score=164.89  Aligned_cols=214  Identities=15%  Similarity=0.178  Sum_probs=145.8

Q ss_pred             hhHHHHHHHHHhhhCCCcE--EEeCCHHHHHHHHHHH-HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC---
Q 013019          210 PTTVVVEEKMSALEGAEST--VIMASGMSASTVMLLA-LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~--vv~sSG~aAi~~al~a-ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~---  283 (451)
                      +...++++++++++|.+..  +++++|+++..+++.+ .+++||+|+++++.|..+...+...++..|+++.+++..   
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~  187 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR  187 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCc
Confidence            3467899999999998643  4555555444444433 357899999999999988777766667789999888742   


Q ss_pred             -CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecC-CCCCCccccccCCCcEEEECCcc----
Q 013019          284 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATK----  357 (451)
Q Consensus       284 -D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~t-fa~~~~~~pl~~GaDiVv~S~SK----  357 (451)
                       |+++    +++ +|++|++++| ||+|.+.|+++|.++|+++|+++++|.. .+.+....+..+|+|+++.|..|    
T Consensus       188 ~d~~~----i~~-~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~  261 (438)
T 1wyu_A          188 TPLPE----VGE-EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLP  261 (438)
T ss_dssp             CCCCC----CCT-TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCC
T ss_pred             cCHHH----hCC-CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCC
Confidence             2333    665 4999999999 9999999999999999999999997743 22222233456789999999444    


Q ss_pred             -cCCccccceeEEEEeCHHHHHHHHHH-------------------------hHhhC-CCc---cHHH---HH--HHHHh
Q 013019          358 -FIGGHNDVLAGSISGSGKLVTQIRNL-------------------------HHVLG-GAL---NPNA---AY--LIIRG  402 (451)
Q Consensus       358 -~l~G~gdv~gG~Iv~~~eli~~lr~~-------------------------~~~~G-~~l---s~~~---a~--l~lrg  402 (451)
                       +++|++   +|++++++++++++...                         +...+ ...   ....   ++  +...+
T Consensus       262 ~~~~Gp~---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~  338 (438)
T 1wyu_A          262 MGFGGPH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG  338 (438)
T ss_dssp             CGGGCSC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCC---eeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhC
Confidence             344553   79999998876654210                         11111 111   2222   22  21122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          403 MKTLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       403 L~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      -+.+....++..++++.+.+.|++.|+++.
T Consensus       339 ~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~  368 (438)
T 1wyu_A          339 PEGLREVALKSVEMAHKLHALLLEVPGVRP  368 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            233555567777889999999999888754

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.72  E-value=6.3e-16  Score=160.85  Aligned_cols=229  Identities=10%  Similarity=0.065  Sum_probs=151.1

Q ss_pred             cccCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcchHHHHHHh---
Q 013019          203 EYGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV---  269 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t~~~l~~~---  269 (451)
                      .+.++.++...+|+++|+++.+  .+.+++++||++|+..++.+++.        .+++||+.++.|.+........   
T Consensus        88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~  167 (460)
T 3gju_A           88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL  167 (460)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred             cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence            3446678889999999999874  36788888999999999988874        4689999999997743222111   


Q ss_pred             ------hhcCCcEEEEeCC------CC------------HHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHH
Q 013019          270 ------LPKMGITATVIDP------AD------------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV  318 (451)
Q Consensus       270 ------l~~~Gi~v~~vd~------~D------------~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~I  318 (451)
                            +......+..++.      .|            +++|++++++   +++++|++|.++|++|.+.+    +++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l  247 (460)
T 3gju_A          168 DLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKI  247 (460)
T ss_dssp             GGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred             cccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence                  1111122333331      12            6889988862   34899999988888887665    9999


Q ss_pred             HHHHHhcCCEEEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH-------hH
Q 013019          319 SDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------HH  385 (451)
Q Consensus       319 aelA~~~g~~lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-------~~  385 (451)
                      .++|++||++||+||+|... ..     ........|++  +++|.+++. ..+.|++++++++++.+...       ..
T Consensus       248 ~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~--t~sK~l~gG-~~~lg~v~~~~~i~~~~~~~~~~~~~~~~  324 (460)
T 3gju_A          248 QAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLI--TIAKGLTSA-YAPLSGVIVADRVWQVLVQGSDKLGSLGH  324 (460)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEE--EECGGGTTT-SSCCEEEEEEHHHHHHHHHHHHHHCSCSC
T ss_pred             HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCee--eeehhhcCC-CCCeEEEEECHHHHHHHhccccccccccc
Confidence            99999999999999997632 11     11112234665  477999873 13578899999999888642       11


Q ss_pred             hhCCCccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHH----HHHHcCCCeEEEe
Q 013019          386 VLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMA----EILEAHPKVLLLF  434 (451)
Q Consensus       386 ~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~La----e~L~~~p~V~~V~  434 (451)
                      ......++..+..++..|+.+..  .+++..++.+.+.    +.|.++|.+..+.
T Consensus       325 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  379 (460)
T 3gju_A          325 GWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVR  379 (460)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence            11234567766666666654322  2444444444444    4455677766553

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.72  E-value=1.5e-16  Score=166.19  Aligned_cols=229  Identities=12%  Similarity=0.124  Sum_probs=155.9

Q ss_pred             ccCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc-------CCC-eEEEcCCCCcchHHHHHHh----
Q 013019          204 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP-------AGG-HIVTTTDCYRKTRIFIETV----  269 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~-------~GD-~VIv~~~~Y~~t~~~l~~~----  269 (451)
                      ++++.++...+|+++|+++.+  .+.+++++||++|+..++..++.       +|+ +||+.++.|.+........    
T Consensus       112 ~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~  191 (457)
T 3tfu_A          112 FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPH  191 (457)
T ss_dssp             SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCc
Confidence            467788999999999999995  46788889999999999988765       554 8898888887632211111    


Q ss_pred             ------hhcCCcEEEEeCC-------CCHHHHHHhhcC--CCeEEEEEeC-CCCCcccccc----HHHHHHHHHhcCCEE
Q 013019          270 ------LPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIV  329 (451)
Q Consensus       270 ------l~~~Gi~v~~vd~-------~D~d~Le~ai~~--~~tklV~les-PsNPtG~v~D----L~~IaelA~~~g~~l  329 (451)
                            .......+.+++.       .|+++|++++++  +++++|++|. ++|++|.+.+    +++|.++|++||++|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill  271 (457)
T 3tfu_A          192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL  271 (457)
T ss_dssp             ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred             ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence                  1111112233332       368899999872  2489999999 8999998875    999999999999999


Q ss_pred             EEecCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH-----hHhhCCCccHHHHHH
Q 013019          330 CIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGGALNPNAAYL  398 (451)
Q Consensus       330 VVD~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-----~~~~G~~ls~~~a~l  398 (451)
                      |+||++...      ..........|++  +++|.++|. ..++|++++++++++.+...     ........++..+..
T Consensus       272 I~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG-~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aa  348 (457)
T 3tfu_A          272 IFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGG-YLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAV  348 (457)
T ss_dssp             EEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTT-SSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHH
T ss_pred             EEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCC-CcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHH
Confidence            999997532      1112222345766  788998873 23588999999998888632     111123456777666


Q ss_pred             HHHhhHHHHH--HHHHHHHHHHHHHHHHHc---CCCeEEEec
Q 013019          399 IIRGMKTLHL--RVQQQNSTALRMAEILEA---HPKVLLLFI  435 (451)
Q Consensus       399 ~lrgL~tl~~--Rl~~~~~nA~~Lae~L~~---~p~V~~V~y  435 (451)
                      ++..|+.+..  ..++..++.+.+.+.|++   +|.|..+..
T Consensus       349 a~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~  390 (457)
T 3tfu_A          349 SVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRV  390 (457)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEE
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeec
Confidence            6666665432  345566667777777764   466665543

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.72  E-value=3.2e-16  Score=160.86  Aligned_cols=218  Identities=13%  Similarity=0.043  Sum_probs=145.7

Q ss_pred             cCCCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHcc-CCCeEEEcCCCCcchHHHHHHh----------h
Q 013019          205 GRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETV----------L  270 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~-~GD~VIv~~~~Y~~t~~~l~~~----------l  270 (451)
                      .+|.++...+|+++|++++|.   ++.+++++|++|+..++.++.. +||+||+.++.|.+........          .
T Consensus        81 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~  160 (419)
T 2eo5_A           81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIV  160 (419)
T ss_dssp             SCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence            467788899999999999985   3566677788999999887654 4999999999997643322111          0


Q ss_pred             hcCCcEEEEeCCC---------------------CHHHHH-HhhcC----CCeEEEEEeCCCCCcccccc----HHHHHH
Q 013019          271 PKMGITATVIDPA---------------------DMEGLE-AALNN----NNVSLFFTESPTNPFLRCVD----VKLVSD  320 (451)
Q Consensus       271 ~~~Gi~v~~vd~~---------------------D~d~Le-~ai~~----~~tklV~lesPsNPtG~v~D----L~~Iae  320 (451)
                      ......+..++..                     |+++|+ +++++    +++++|+++..+||+|.+.+    +++|.+
T Consensus       161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~  240 (419)
T 2eo5_A          161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK  240 (419)
T ss_dssp             CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence            0111234444322                     367898 88863    24777777654567897665    999999


Q ss_pred             HHHhcCCEEEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHH
Q 013019          321 LCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  394 (451)
Q Consensus       321 lA~~~g~~lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~  394 (451)
                      +|++||++||+||+|... ..     ........|++  |++|.+++ |-.+.|+++++++++ .+ ..........++.
T Consensus       241 l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~  315 (419)
T 2eo5_A          241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHSNTFGGNAL  315 (419)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC-------CCCCCHH
T ss_pred             HHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-CccceEEEEEchHhh-cC-CcccCCCCCCCHH
Confidence            999999999999998632 11     11122345665  68999986 314678888888877 65 2122222344676


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       395 ~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .+..+...++.+....++..++.+.+.+.|++.
T Consensus       316 ~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~  348 (419)
T 2eo5_A          316 ACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL  348 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666655445566777888888888775

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.72  E-value=5.3e-16  Score=159.23  Aligned_cols=225  Identities=12%  Similarity=0.108  Sum_probs=144.4

Q ss_pred             CCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcchHHHHHHhhhc---
Q 013019          206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVLPK---  272 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t~~~l~~~l~~---  272 (451)
                      ++.++...+|+++|+++++.  ++.+++++|++|+..++.+++.        .||+||+.++.|.+........-..   
T Consensus        68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  147 (430)
T 3i4j_A           68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR  147 (430)
T ss_dssp             TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccc
Confidence            57788899999999999964  6777888899999999988763        4789999999998743221111000   


Q ss_pred             ------CCc--EEEEeCCC--------CHHHHHHhhcC---CCeEEEEEeCCCC-Ccccccc----HHHHHHHHHhcCCE
Q 013019          273 ------MGI--TATVIDPA--------DMEGLEAALNN---NNVSLFFTESPTN-PFLRCVD----VKLVSDLCHKKGAI  328 (451)
Q Consensus       273 ------~Gi--~v~~vd~~--------D~d~Le~ai~~---~~tklV~lesPsN-PtG~v~D----L~~IaelA~~~g~~  328 (451)
                            ...  .+..++..        |+++|++++++   +++++|++|.++| ++|...+    +++|.++|++||++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~  227 (430)
T 3i4j_A          148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGII  227 (430)
T ss_dssp             --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCE
T ss_pred             ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence                  000  22233332        44888888862   3478888888788 8888776    99999999999999


Q ss_pred             EEEecCCCCC-Cc-----cccc-cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH----hHhhCCCccHHHHH
Q 013019          329 VCIDGTFATP-LN-----QKAL-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVLGGALNPNAAY  397 (451)
Q Consensus       329 lVVD~tfa~~-~~-----~~pl-~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~----~~~~G~~ls~~~a~  397 (451)
                      ||+||+|... ..     .... ....|++  +++|.+++ |-.+.|++++++++++.++..    ........++..+.
T Consensus       228 li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~a  304 (430)
T 3i4j_A          228 FIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVA  304 (430)
T ss_dssp             EEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHH
T ss_pred             EEEechhhCCCcccchhhhhhhcCCCCcEE--EEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHH
Confidence            9999997642 11     1111 2224665  47899986 324678999999999988763    22222345677666


Q ss_pred             HHHHhhHHHH--HHHHHHHHHHHHHHHHH----HcCCCeEEE
Q 013019          398 LIIRGMKTLH--LRVQQQNSTALRMAEIL----EAHPKVLLL  433 (451)
Q Consensus       398 l~lrgL~tl~--~Rl~~~~~nA~~Lae~L----~~~p~V~~V  433 (451)
                      .++..|+.+.  ..+++..++.+.+.+.|    .++|.+..+
T Consensus       305 aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  346 (430)
T 3i4j_A          305 AGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV  346 (430)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            6555555432  22444445555554444    356766554

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.72  E-value=1.7e-16  Score=166.92  Aligned_cols=226  Identities=12%  Similarity=0.166  Sum_probs=152.2

Q ss_pred             ccccCCCchhHHHHHH----HHHhhhCC---CcEEEeCCHHHHHHHHHHHH----c---------cC------CC-eEEE
Q 013019          202 FEYGRYGNPTTVVVEE----KMSALEGA---ESTVIMASGMSASTVMLLAL----V---------PA------GG-HIVT  254 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee----~LA~l~ga---e~~vv~sSG~aAi~~al~al----l---------~~------GD-~VIv  254 (451)
                      +.|+.  .|....+|+    +|++++|.   +..+++++|++|+..++.++    +         .+      || +|++
T Consensus       130 ~~~~~--~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~  207 (497)
T 2qma_A          130 DSWDQ--ASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVC  207 (497)
T ss_dssp             TCGGG--CHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEE
T ss_pred             cchhh--ChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEE
Confidence            44543  355555554    49999986   45777788889999888773    3         13      46 7999


Q ss_pred             cCCCCcchHHHHHHhhhcCCc-EEEEeCCC-----CHHHHHHhhcCC---Ce--EEEEEeCCCCCccccccHHHHHHHHH
Q 013019          255 TTDCYRKTRIFIETVLPKMGI-TATVIDPA-----DMEGLEAALNNN---NV--SLFFTESPTNPFLRCVDVKLVSDLCH  323 (451)
Q Consensus       255 ~~~~Y~~t~~~l~~~l~~~Gi-~v~~vd~~-----D~d~Le~ai~~~---~t--klV~lesPsNPtG~v~DL~~IaelA~  323 (451)
                      +...|.+....+.. +. .|. ++..++.+     |+++|+++|+++   .+  .+|+++.++|++|.+.|+++|.++|+
T Consensus       208 s~~~h~s~~~~~~~-~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~  285 (497)
T 2qma_A          208 SKKSHFTVQKSASW-MG-LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAV  285 (497)
T ss_dssp             ETTSCTHHHHHHHH-TT-SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             CCCchHHHHHHHHH-cC-CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence            98899876644322 11 133 56666643     789999988642   13  48888999999999999999999999


Q ss_pred             hcCCEEEEecCCCCCCcccc----c-cC-CCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhC--------
Q 013019          324 KKGAIVCIDGTFATPLNQKA----L-SL-GADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG--------  388 (451)
Q Consensus       324 ~~g~~lVVD~tfa~~~~~~p----l-~~-GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G--------  388 (451)
                      ++|+++++|++|+.+....+    + .. ++|+++.|+||+++++.  ..|+++.+ +.+++.+.....++.        
T Consensus       286 ~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~--~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~  363 (497)
T 2qma_A          286 KHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTI--SCGALLVNDKSNFKFLLHHADYLNREHDELPN  363 (497)
T ss_dssp             HHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCS--SCEEEEESCGGGGGGGCC--------------
T ss_pred             HcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCc--ceEEEEEeCHHHHHHhcCCchhcCCccccCCC
Confidence            99999999999876532211    1 12 67999999999998874  35666654 443333221010110        


Q ss_pred             ---C------CccHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          389 ---G------ALNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       389 ---~------~ls~~~a~l~lrg--L~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                         .      .......|.+++.  .+.+..++++..++++.+.+.|++.|+++.+
T Consensus       364 ~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~  419 (497)
T 2qma_A          364 LVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELL  419 (497)
T ss_dssp             ------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEC
T ss_pred             ccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence               0      0123334555543  3556677888889999999999998887543

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.72  E-value=2.4e-16  Score=165.55  Aligned_cols=226  Identities=15%  Similarity=0.185  Sum_probs=159.9

Q ss_pred             CccccCCCchhHHHHHHHH----HhhhCCC------------cEEEeCCHHHHHHHHHHHHcc-----------------
Q 013019          201 SFEYGRYGNPTTVVVEEKM----SALEGAE------------STVIMASGMSASTVMLLALVP-----------------  247 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~L----A~l~gae------------~~vv~sSG~aAi~~al~all~-----------------  247 (451)
                      .+.|.  ..|...+||+.+    ++++|.+            ..+++++|++|+..++.+...                 
T Consensus       107 ~~~~~--~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~  184 (481)
T 4e1o_A          107 GFTWA--SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESS  184 (481)
T ss_dssp             CSSTT--TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred             cCCcC--CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCccccccc
Confidence            34454  457777777655    6667753            468888999999888876542                 


Q ss_pred             --CCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----CCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccH
Q 013019          248 --AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDV  315 (451)
Q Consensus       248 --~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL  315 (451)
                        +++.|+++...|.+.....    ...|++++.++.     .|+++|+++|+++     .+.+|++..++|++|.+.|+
T Consensus       185 ~~~~~~v~~s~~~H~s~~~~~----~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l  260 (481)
T 4e1o_A          185 LNARLVAYASDQAHSSVEKAG----LISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCL  260 (481)
T ss_dssp             HHTTEEEEEETTSCHHHHHHH----HHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred             ccCCeEEEEcCcchHHHHHHH----HhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCH
Confidence              5678999999998866543    335788888874     3899999999753     16788889999999999999


Q ss_pred             HHHHHHHHhcCCEEEEecCCCCCCc----cccccCC---CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-Hhh
Q 013019          316 KLVSDLCHKKGAIVCIDGTFATPLN----QKALSLG---ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVL  387 (451)
Q Consensus       316 ~~IaelA~~~g~~lVVD~tfa~~~~----~~pl~~G---aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-~~~  387 (451)
                      ++|+++|++||+++++|++|+....    .+.+..|   +|.++.++||+++++.+ .+++++.+++++.+..... .++
T Consensus       261 ~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~~~~yl  339 (481)
T 4e1o_A          261 SELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD-CTGFWVKDKYKLQQTFSVNPIYL  339 (481)
T ss_dssp             HHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESBHHHHHTTTCCCCGGG
T ss_pred             HHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc-eEEEEEeCHHHHHHHhcCCchhc
Confidence            9999999999999999999876422    1222224   59999999999998753 2344444455443211100 011


Q ss_pred             ------------------CCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          388 ------------------GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       388 ------------------G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                                        +........|.+++  +.+.+..++++..++++.+++.|++.|+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~  405 (481)
T 4e1o_A          340 RHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIP  405 (481)
T ss_dssp             CCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECC
T ss_pred             cCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence                              11123455565554  55677888899999999999999999887643

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.71  E-value=2e-16  Score=163.88  Aligned_cols=226  Identities=15%  Similarity=0.115  Sum_probs=144.2

Q ss_pred             cCCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc----CC----CeEEEcCCCCcchHHHHHHh-----
Q 013019          205 GRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP----AG----GHIVTTTDCYRKTRIFIETV-----  269 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~----~G----D~VIv~~~~Y~~t~~~l~~~-----  269 (451)
                      .++.++...+|+++|+++.+  .+.+++++||++|+..++..++.    +|    |+||+.++.|.+........     
T Consensus        82 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~  161 (448)
T 3dod_A           82 LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIEL  161 (448)
T ss_dssp             SSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC------------------
T ss_pred             cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcc
Confidence            45677889999999999985  46788889999999999988776    45    99999999997643211100     


Q ss_pred             ----hhcCCcEEEEeCCC----------------CHHHHHHhhc--CCCeEEEEEeCCC-CCcccccc----HHHHHHHH
Q 013019          270 ----LPKMGITATVIDPA----------------DMEGLEAALN--NNNVSLFFTESPT-NPFLRCVD----VKLVSDLC  322 (451)
Q Consensus       270 ----l~~~Gi~v~~vd~~----------------D~d~Le~ai~--~~~tklV~lesPs-NPtG~v~D----L~~IaelA  322 (451)
                          +......+..++..                |+++|+++++  ++++++|++|.++ |++|.+.+    +++|.++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~  241 (448)
T 3dod_A          162 FHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC  241 (448)
T ss_dssp             -----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred             ccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence                00001122333332                3788999886  2348899999888 88887765    99999999


Q ss_pred             HhcCCEEEEecCCCCC-C-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHH-------HhHhhCC
Q 013019          323 HKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-------LHHVLGG  389 (451)
Q Consensus       323 ~~~g~~lVVD~tfa~~-~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~-------~~~~~G~  389 (451)
                      ++||++||+||++... .     .........|++  +++|.+++ |.+..|++++++++++.++.       .......
T Consensus       242 ~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t~sK~l~~-G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~  318 (448)
T 3dod_A          242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--AAGKGITG-GYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSY  318 (448)
T ss_dssp             HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTT
T ss_pred             HHhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--EecccccC-CcCceEEEEECHHHHHHhhhccccCCcccccCCC
Confidence            9999999999997632 1     112122234665  57899976 42467899999998887764       2221223


Q ss_pred             CccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHH---cCCCeEEE
Q 013019          390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILE---AHPKVLLL  433 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~---~~p~V~~V  433 (451)
                      ..++..+..++..|+.+..  .+++..++.+.+.+.|+   ++|.+..+
T Consensus       319 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  367 (448)
T 3dod_A          319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI  367 (448)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred             CcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            4567776666666664432  24555555555555554   56666544

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.71  E-value=2.6e-16  Score=162.96  Aligned_cols=215  Identities=19%  Similarity=0.212  Sum_probs=141.1

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHH---HccCCCeEEEcCCCCcchHHHHHHhh------h-cCCc
Q 013019          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRKTRIFIETVL------P-KMGI  275 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~-gae~~vv~sSG~aAi~~al~a---ll~~GD~VIv~~~~Y~~t~~~l~~~l------~-~~Gi  275 (451)
                      +.++...+|.++++++. +.+.+++++||++|+..++.+   +.+ +++||+.++.|.+.........      . ..|+
T Consensus        94 ~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~  172 (453)
T 2cy8_A           94 ASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV  172 (453)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC-------------------------
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC
Confidence            56778888888988887 567788889999999999887   544 5788888898876433211100      0 1233


Q ss_pred             ------EEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCcc--
Q 013019          276 ------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ--  341 (451)
Q Consensus       276 ------~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~~--  341 (451)
                            .+..++..|+++|++++++  .++++|++|..+|++|.+.+    +++|.++|++||++||+||++......  
T Consensus       173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~  252 (453)
T 2cy8_A          173 LPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNH  252 (453)
T ss_dssp             ---CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTT
T ss_pred             CccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCch
Confidence                  2444555789999999873  24888888766678998887    999999999999999999998732111  


Q ss_pred             ---ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHH---H--hHhhCCCccHHHHHHHHHhhHH-H-HHHHH
Q 013019          342 ---KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---L--HHVLGGALNPNAAYLIIRGMKT-L-HLRVQ  411 (451)
Q Consensus       342 ---~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~---~--~~~~G~~ls~~~a~l~lrgL~t-l-~~Rl~  411 (451)
                         .......|++  |++|.+++ | ..+|++++++++++.++.   .  ........++..+..++..|+. + ....+
T Consensus       253 ~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~  328 (453)
T 2cy8_A          253 GMQALLDVQPDLT--CLAKASAG-G-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCA  328 (453)
T ss_dssp             HHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             hhhHHhCCCCcEE--EEChhhhC-C-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHH
Confidence               1122345765  78899986 3 468999999988877654   1  1111224567777666666665 4 33455


Q ss_pred             HHHHHHHHHHHHHHc
Q 013019          412 QQNSTALRMAEILEA  426 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~  426 (451)
                      +..++.+.+.+.|++
T Consensus       329 ~~~~~~~~l~~~L~~  343 (453)
T 2cy8_A          329 KINDLGQFAREAMNH  343 (453)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666677777776654

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.71  E-value=2.1e-16  Score=162.35  Aligned_cols=217  Identities=18%  Similarity=0.217  Sum_probs=147.6

Q ss_pred             CCCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhhh----------c
Q 013019          206 RYGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLP----------K  272 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g-ae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l~----------~  272 (451)
                      .|.++...+|+++|+++++ .+..++++||++|+..++..+..  ++++||+.++.|.+..........          .
T Consensus        91 ~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~  170 (434)
T 3l44_A           91 GTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDS  170 (434)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSS
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCc
Confidence            3578888999999999984 57788888999999999987654  678999999998763311100000          0


Q ss_pred             CCc------EEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCc
Q 013019          273 MGI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN  340 (451)
Q Consensus       273 ~Gi------~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~  340 (451)
                      .++      .+..++..|+++|++++++  .++++|++|.++|++|.+.+    +++|.++|++||++||+||++.....
T Consensus       171 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~  250 (434)
T 3l44_A          171 AGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRF  250 (434)
T ss_dssp             TTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTS
T ss_pred             CCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceec
Confidence            011      3445566689999998872  24888998877777888877    99999999999999999999864211


Q ss_pred             -----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh---HhhCCCccHHHHHHHHHhhHHH--HHHH
Q 013019          341 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTL--HLRV  410 (451)
Q Consensus       341 -----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~---~~~G~~ls~~~a~l~lrgL~tl--~~Rl  410 (451)
                           ........|++  +++|.+++ | .+.|++++++++++.+....   .......++..+..++..++.+  ...+
T Consensus       251 g~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~  326 (434)
T 3l44_A          251 MYGGAQDLLGVTPDLT--ALGKVIGG-G-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLY  326 (434)
T ss_dssp             SSSCHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHH
T ss_pred             cccHHHHHcCCCCCee--ehhhhhcC-C-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHH
Confidence                 11122334654  67899974 4 57888899999888766421   1112345666666555555543  2234


Q ss_pred             HHHHHHHHHHHHHHHc
Q 013019          411 QQQNSTALRMAEILEA  426 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~  426 (451)
                      ++..++.+.+.+.|++
T Consensus       327 ~~~~~~~~~l~~~L~~  342 (434)
T 3l44_A          327 EKLDELGATLEKGILE  342 (434)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555666666666654

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.71  E-value=1e-16  Score=164.89  Aligned_cols=217  Identities=15%  Similarity=0.180  Sum_probs=150.7

Q ss_pred             CCCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHH--ccCCCeEEEcCCCCcchHHHHHHhh----------hc
Q 013019          206 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL----------PK  272 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~-gae~~vv~sSG~aAi~~al~al--l~~GD~VIv~~~~Y~~t~~~l~~~l----------~~  272 (451)
                      .+.++...+|+++|+++. +.+..++++||++|+..++...  +..+++||+.++.|.+.........          ..
T Consensus        92 ~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~  171 (434)
T 2epj_A           92 GAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTS  171 (434)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESS
T ss_pred             CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCC
Confidence            357788899999999999 6788888999999999998862  3456788888888876322110000          01


Q ss_pred             CCc------EEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCc
Q 013019          273 MGI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN  340 (451)
Q Consensus       273 ~Gi------~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~  340 (451)
                      .|+      .+..++..|+++|++++++  .++++|++|..+|++|.+.+    +++|.++|++||++||+||++.....
T Consensus       172 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~  251 (434)
T 2epj_A          172 AGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL  251 (434)
T ss_dssp             TTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTS
T ss_pred             CCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeC
Confidence            233      2444555689999999873  24889988876778999888    99999999999999999999873211


Q ss_pred             c-----ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-hhC--CCccHHHHHHHHHhhHHHH--HHH
Q 013019          341 Q-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTLH--LRV  410 (451)
Q Consensus       341 ~-----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-~~G--~~ls~~~a~l~lrgL~tl~--~Rl  410 (451)
                      .     .......|++  |++|.+++ | ..+|++++++++++.++.... ..+  ...++..+..++..|+.+.  ...
T Consensus       252 g~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~  327 (434)
T 2epj_A          252 GLEGAQGYFNIEGDII--VLGKIIGG-G-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVY  327 (434)
T ss_dssp             STTHHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHH
T ss_pred             CcchhhHHhCCCCCee--eecchhcC-C-cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHH
Confidence            1     1112346765  78899987 4 568999999988877654211 112  2356776666666665543  235


Q ss_pred             HHHHHHHHHHHHHHHc
Q 013019          411 QQQNSTALRMAEILEA  426 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~  426 (451)
                      ++..++.+.+.+.|++
T Consensus       328 ~~~~~~~~~l~~~L~~  343 (434)
T 2epj_A          328 SVSREAAKALEEAASE  343 (434)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5666677777777765

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.70  E-value=8.9e-16  Score=158.92  Aligned_cols=226  Identities=14%  Similarity=0.164  Sum_probs=150.3

Q ss_pred             cCCCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHc-----c---CCCeEEEcCCCCcchHHHHHHhh-----
Q 013019          205 GRYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV-----P---AGGHIVTTTDCYRKTRIFIETVL-----  270 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~aAi~~al~all-----~---~GD~VIv~~~~Y~~t~~~l~~~l-----  270 (451)
                      .++.++...+|+++|+++.+. .++++++||++|+..++..++     .   ++|+|++.++.|.+........-     
T Consensus        86 ~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~  165 (452)
T 3n5m_A           86 MSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQR  165 (452)
T ss_dssp             TTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGG
T ss_pred             cccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhh
Confidence            456778899999999999875 237777889999999998877     4   78999999999977432221110     


Q ss_pred             ----hcCCcEEEEeCC--------CC---------HHHHHHhhc---CCCeEEEEEeCC-CCCcccccc----HHHHHHH
Q 013019          271 ----PKMGITATVIDP--------AD---------MEGLEAALN---NNNVSLFFTESP-TNPFLRCVD----VKLVSDL  321 (451)
Q Consensus       271 ----~~~Gi~v~~vd~--------~D---------~d~Le~ai~---~~~tklV~lesP-sNPtG~v~D----L~~Iael  321 (451)
                          ......+.+++.        .|         +++|+++++   +.++++|++|.+ +| +|.+.+    +++|.++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l  244 (452)
T 3n5m_A          166 RYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHET  244 (452)
T ss_dssp             TTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHH
T ss_pred             ccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHH
Confidence                001112333332        23         899999987   235899999998 89 998876    9999999


Q ss_pred             HHhcCCEEEEecCCCCC-C-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHH---Hh---HhhCC
Q 013019          322 CHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LH---HVLGG  389 (451)
Q Consensus       322 A~~~g~~lVVD~tfa~~-~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~---~~---~~~G~  389 (451)
                      |++||++||+||++... .     .........|++  +++|.+++ |-.+.|++++++++++.++.   ..   .....
T Consensus       245 ~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~  321 (452)
T 3n5m_A          245 CQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTF  321 (452)
T ss_dssp             HHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSS
T ss_pred             HHHcCCEEEEecchhCCCcccccchhhhcCCCCCEE--eecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCC
Confidence            99999999999997532 1     112122234665  47899976 42467889999988887743   11   11123


Q ss_pred             CccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCeEEEe
Q 013019          390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEIL----EAHPKVLLLF  434 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L----~~~p~V~~V~  434 (451)
                      ..++..+..++..|+.+..  .+++..++.+.+.+.|    .++|.+..+.
T Consensus       322 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  372 (452)
T 3n5m_A          322 GGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIR  372 (452)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            4567776666666654422  2455555555555555    4567665543

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.70  E-value=1.7e-15  Score=155.44  Aligned_cols=224  Identities=11%  Similarity=0.111  Sum_probs=147.1

Q ss_pred             cCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhh----------
Q 013019          205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVL----------  270 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l----------  270 (451)
                      .+|.++...+|+++|+++++.  ++.+++++|++|+..++..+.  ..+|+|++.++.|.+.........          
T Consensus        80 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~  159 (433)
T 1zod_A           80 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP  159 (433)
T ss_dssp             TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred             cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence            356678889999999999973  667777889999999987653  345799999999976432211110          


Q ss_pred             hcCCcEEEEeCC------C---------CHHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCE
Q 013019          271 PKMGITATVIDP------A---------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI  328 (451)
Q Consensus       271 ~~~Gi~v~~vd~------~---------D~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~  328 (451)
                      ...|+....++.      .         |+++|++++++   +++++|++|..+||+|...+    +++|.++|++||++
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~  239 (433)
T 1zod_A          160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGML  239 (433)
T ss_dssp             CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCE
T ss_pred             CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCE
Confidence            011333222211      1         48899998873   34888888655688997665    99999999999999


Q ss_pred             EEEecCCCCC-Ccc-----ccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHHH
Q 013019          329 VCIDGTFATP-LNQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLII  400 (451)
Q Consensus       329 lVVD~tfa~~-~~~-----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~l  400 (451)
                      ||+||++... ...     .......|++  |++|.+++ | .+.|++++++++++.++.....  .....++..+..++
T Consensus       240 li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G-~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~  315 (433)
T 1zod_A          240 LILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-G-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGL  315 (433)
T ss_dssp             EEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-T-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHH
T ss_pred             EEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccC-C-CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHH
Confidence            9999998732 111     1112334654  78899987 4 5789999999998888763211  11234666655555


Q ss_pred             HhhHHHH--HHHHHHHHHHHHHHHHHHc----CCCeEE
Q 013019          401 RGMKTLH--LRVQQQNSTALRMAEILEA----HPKVLL  432 (451)
Q Consensus       401 rgL~tl~--~Rl~~~~~nA~~Lae~L~~----~p~V~~  432 (451)
                      ..++.+.  ...++..++.+.+.+.|++    +|.+..
T Consensus       316 aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~  353 (433)
T 1zod_A          316 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD  353 (433)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            5554432  2345555666666666654    465433

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.70  E-value=1.8e-16  Score=161.10  Aligned_cols=211  Identities=11%  Similarity=0.032  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHhhhCCC---cEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcC--CcEEEEeCCCC
Q 013019          211 TTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM--GITATVIDPAD  284 (451)
Q Consensus       211 t~~~Lee~LA~l~gae---~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~--Gi~v~~vd~~D  284 (451)
                      ..+++++++++++|.+   +.++ +++|++|+.+++.+++++| .+++....|+...  . ......  |.++.+++..+
T Consensus        79 ~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~--~-~~~~~~~~g~~~~~v~~~~  154 (398)
T 2fyf_A           79 LVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKF--A-SAVSKNPFVGEPIIITSDP  154 (398)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHH--H-HHHHHCTTSCCCEEEECCT
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHH--H-HHHHHhCCCCceEEEecCC
Confidence            4678999999999974   3455 5778899999999999887 2333333343211  1 112222  55555554321


Q ss_pred             HHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCcccc
Q 013019          285 MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHND  364 (451)
Q Consensus       285 ~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gd  364 (451)
                      -......+++ ++++|++++|+||||.+.|+++|.++   +|+++|+|++++.+...-.+. ++|+++.|+||++++++ 
T Consensus       155 g~~~~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~g-  228 (398)
T 2fyf_A          155 GSAPEPQTDP-SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDG-  228 (398)
T ss_dssp             TCCCCCCCCT-TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCS-
T ss_pred             CCCCCccccC-CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCC-
Confidence            0000112555 48999999999999999999988887   899999999987543221222 47999999999999885 


Q ss_pred             ceeEEEEeCHHHHHHHHHHhH---------------------hhCCCccHHHHHHHHHhhHH------HHHHHHHHHHHH
Q 013019          365 VLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTA  417 (451)
Q Consensus       365 v~gG~Iv~~~eli~~lr~~~~---------------------~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA  417 (451)
                       ..|+++++++++++++....                     ....+.+....+.+...++.      +..+.++..+++
T Consensus       229 -g~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~  307 (398)
T 2fyf_A          229 -GLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSS  307 (398)
T ss_dssp             -SEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred             -ceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence             36889999998887754310                     00122333333333333332      455567778889


Q ss_pred             HHHHHHHHcCCCeEE
Q 013019          418 LRMAEILEAHPKVLL  432 (451)
Q Consensus       418 ~~Lae~L~~~p~V~~  432 (451)
                      +.+.+.|++.|+++.
T Consensus       308 ~~l~~~L~~~~g~~~  322 (398)
T 2fyf_A          308 QRLYSWAQERPYTTP  322 (398)
T ss_dssp             HHHHHHHHHSTTEEE
T ss_pred             HHHHHHHHHcCCcee
Confidence            999999999887643

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.69  E-value=8.1e-16  Score=161.49  Aligned_cols=220  Identities=13%  Similarity=0.087  Sum_probs=155.0

Q ss_pred             CchhHHHHHHH----HHhhhCCC-----------cEEEeCCHHHHHHHHHHHHcc-------------------CCCeEE
Q 013019          208 GNPTTVVVEEK----MSALEGAE-----------STVIMASGMSASTVMLLALVP-------------------AGGHIV  253 (451)
Q Consensus       208 ~npt~~~Lee~----LA~l~gae-----------~~vv~sSG~aAi~~al~all~-------------------~GD~VI  253 (451)
                      ..|...+||+.    +++++|.+           ..+++++|++|+..++.+...                   +++.|+
T Consensus       107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi  186 (475)
T 3k40_A          107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY  186 (475)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence            46777777765    46777764           478889999998888776531                   346899


Q ss_pred             EcCCCCcchHHHHHHhhhcCCcEEEEeCC----CCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHHh
Q 013019          254 TTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHK  324 (451)
Q Consensus       254 v~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~~  324 (451)
                      ++...|.+.....    ...|+++..++.    .|+++|+++|+++     .+.+|++..++|++|.+.|+++|+++|++
T Consensus       187 ~s~~~H~s~~~~~----~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~  262 (475)
T 3k40_A          187 CSDQAHSSVERAG----LLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK  262 (475)
T ss_dssp             EETTSCHHHHHHH----HHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred             ECCCchHHHHHHH----HHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHH
Confidence            9999998866443    345888888876    4899999999753     16788888999999999999999999999


Q ss_pred             cCCEEEEecCCCCCCcc----ccccC---CCcEEEECCcccCCccccceeEEEEe-CHHHHH-HHHHHhHhh--------
Q 013019          325 KGAIVCIDGTFATPLNQ----KALSL---GADLVLHSATKFIGGHNDVLAGSISG-SGKLVT-QIRNLHHVL--------  387 (451)
Q Consensus       325 ~g~~lVVD~tfa~~~~~----~pl~~---GaDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~-~lr~~~~~~--------  387 (451)
                      +|+++++|++++.+...    +....   ++|.++.++||+++++.  .+|+++. +++++. .+.....++        
T Consensus       263 ~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~--g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~  340 (475)
T 3k40_A          263 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF--DCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSA  340 (475)
T ss_dssp             TTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESSGGGC-------------------
T ss_pred             hCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC--ceEEEEEeCHHHHHHHhcCCccccCCCcCCCC
Confidence            99999999998764221    11112   36999999999998775  2455554 444432 221110000        


Q ss_pred             ----------CCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          388 ----------GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       388 ----------G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                                +........|.+++  +.+.+..++++..++++.+++.|++.|+++.+
T Consensus       341 ~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~  398 (475)
T 3k40_A          341 PDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA  398 (475)
T ss_dssp             --------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES
T ss_pred             CCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence                      00112344455444  45667788899999999999999999988654

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.68  E-value=3.6e-16  Score=160.75  Aligned_cols=216  Identities=16%  Similarity=0.167  Sum_probs=146.8

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHh---------hh-cC
Q 013019          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV---------LP-KM  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~-gae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~---------l~-~~  273 (451)
                      +.++...+|+++|++++ +.+..++++||++|+..++..+..  .+++|++.++.|.+........         .. ..
T Consensus        90 ~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~  169 (429)
T 3k28_A           90 APTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSP  169 (429)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCT
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcC
Confidence            67888999999999998 457788888999999999987654  5688999888887532110000         00 00


Q ss_pred             Cc------EEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCc-
Q 013019          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-  340 (451)
Q Consensus       274 Gi------~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~-  340 (451)
                      ++      .+..++..|+++|++++++  +++++|++|.++|++|.+.+    +++|.++|++||++||+||+|..... 
T Consensus       170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g  249 (429)
T 3k28_A          170 GVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVA  249 (429)
T ss_dssp             TCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSS
T ss_pred             CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence            11      2334455689999998862  24888999887778888887    99999999999999999999863211 


Q ss_pred             ----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh-h--CCCccHHHHHHHHHhhHHH-HHHHHH
Q 013019          341 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-L--GGALNPNAAYLIIRGMKTL-HLRVQQ  412 (451)
Q Consensus       341 ----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~-~--G~~ls~~~a~l~lrgL~tl-~~Rl~~  412 (451)
                          ........|++  +++|.+++ | .++|++++++++++.++..... .  ....++..+..++..++.+ ...+++
T Consensus       250 ~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~  325 (429)
T 3k28_A          250 YNCGQGYYGVTPDLT--CLGKVIGG-G-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYVE  325 (429)
T ss_dssp             TTHHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHHH
T ss_pred             cchHHHHhCCCCcee--hhhhhhcC-C-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence                11122234655  57899975 4 5789999999988876542211 1  1245666666555555432 344556


Q ss_pred             HHHHHHHHHHHHHc
Q 013019          413 QNSTALRMAEILEA  426 (451)
Q Consensus       413 ~~~nA~~Lae~L~~  426 (451)
                      ..++.+.+.+.|++
T Consensus       326 ~~~~~~~l~~~L~~  339 (429)
T 3k28_A          326 FERKAEMLEAGLRK  339 (429)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66667777666654

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.68  E-value=6.9e-16  Score=158.49  Aligned_cols=216  Identities=15%  Similarity=0.143  Sum_probs=143.6

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHH----------HhhhcC
Q 013019          207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKM  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g-ae~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~----------~~l~~~  273 (451)
                      |.++...+|+++|+++.+ .+.+++++||++|+..++....  ..+++||+.++.|.+.....-          ......
T Consensus        90 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  169 (429)
T 4e77_A           90 APTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP  169 (429)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCT
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC
Confidence            578889999999999984 5778888999999999987543  356789998888877442110          000011


Q ss_pred             C------cEEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC---
Q 013019          274 G------ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  338 (451)
Q Consensus       274 G------i~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~---  338 (451)
                      +      ..+..++..|+++|++++++  .++++|++|..++.+|.+.+    +++|.++|++||++||+||++...   
T Consensus       170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g  249 (429)
T 4e77_A          170 GVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVA  249 (429)
T ss_dssp             TSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTB
T ss_pred             CCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccC
Confidence            1      13445566689999999873  24778887655555566666    999999999999999999998732   


Q ss_pred             --CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh---HhhCCCccHHHHHHHHHhhHHH--HHHHH
Q 013019          339 --LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTL--HLRVQ  411 (451)
Q Consensus       339 --~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~---~~~G~~ls~~~a~l~lrgL~tl--~~Rl~  411 (451)
                        ..........|++  |++|.+++ | .++|++++++++++.++...   .......++..+..++..|+.+  ...++
T Consensus       250 ~~~~~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  325 (429)
T 4e77_A          250 LAGAQDYYHVIPDLT--CLGKIIGG-G-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYE  325 (429)
T ss_dssp             TTCHHHHTTCCCSEE--EEEGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cchHHHhcCCCCCee--eecccccC-C-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence              1112122234664  78899985 4 57899999999888766421   1111246777777666666644  23355


Q ss_pred             HHHHHHHHHHHHHHc
Q 013019          412 QQNSTALRMAEILEA  426 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~  426 (451)
                      +..++.+.+.+.|++
T Consensus       326 ~~~~~~~~l~~~L~~  340 (429)
T 4e77_A          326 TLTELTDSLATGLRH  340 (429)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555666666666544

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.68  E-value=2.8e-15  Score=155.86  Aligned_cols=229  Identities=13%  Similarity=0.073  Sum_probs=146.7

Q ss_pred             ccccCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHh-------
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV-------  269 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~-------  269 (451)
                      +.+.++.++...+|+++|+++.+   .+.+++++||++|+..++..++.  .+++|++.++.|.+........       
T Consensus        96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~  175 (451)
T 3oks_A           96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY  175 (451)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence            44556788889999999999986   35788889999999999977654  4478999999998743222111       


Q ss_pred             ---hhcCCcEEEEeCCC------------------CHHHHHHhh----cCCCeEEEEEeCCCCCcccccc----HHHHHH
Q 013019          270 ---LPKMGITATVIDPA------------------DMEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSD  320 (451)
Q Consensus       270 ---l~~~Gi~v~~vd~~------------------D~d~Le~ai----~~~~tklV~lesPsNPtG~v~D----L~~Iae  320 (451)
                         .......+..++..                  +++.+++++    .++++++|++|..++..|.+.+    +++|.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~  255 (451)
T 3oks_A          176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD  255 (451)
T ss_dssp             TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence               01111134444432                  233333443    3334777777655555556555    999999


Q ss_pred             HHHhcCCEEEEecCCCCC-C-----ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHH
Q 013019          321 LCHKKGAIVCIDGTFATP-L-----NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN  394 (451)
Q Consensus       321 lA~~~g~~lVVD~tfa~~-~-----~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~  394 (451)
                      +|++||++||+||+|... .     .........|++  +++|.+++ | .+.|++++++++++.++..........++.
T Consensus       256 l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G-~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~  331 (451)
T 3oks_A          256 WCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-G-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPI  331 (451)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTCSCTTSBCCSSSSCHH
T ss_pred             HHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-C-cceEEEEECHHHHhhhcCCCcCCCCCCCHH
Confidence            999999999999997632 1     112222335666  67899987 4 568889999988887764443333445777


Q ss_pred             HHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCeEEEe
Q 013019          395 AAYLIIRGMKTLHL--RVQQQNSTALRMAEIL----EAHPKVLLLF  434 (451)
Q Consensus       395 ~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L----~~~p~V~~V~  434 (451)
                      .+..++..|+.+..  .+++..++.+.+.+.|    .++|.+..+.
T Consensus       332 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~  377 (451)
T 3oks_A          332 ACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVR  377 (451)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            77666666654432  2444445555555544    4567665543

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.67  E-value=5.3e-15  Score=155.14  Aligned_cols=229  Identities=14%  Similarity=0.145  Sum_probs=153.6

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcchHHHHHHh--
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV--  269 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t~~~l~~~--  269 (451)
                      +.+.++.++...+|+++|+++.+.  +.+++++||++|+..++..+..        .+++||+.++.|.+........  
T Consensus        91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~  170 (472)
T 3hmu_A           91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGG  170 (472)
T ss_dssp             CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccC
Confidence            334567788999999999999853  6788888999999999988775        4678999999997733211111  


Q ss_pred             -------hhcCCcEEEEeCCC---------C--------HHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHH
Q 013019          270 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV  318 (451)
Q Consensus       270 -------l~~~Gi~v~~vd~~---------D--------~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~I  318 (451)
                             +. ....+..++..         |        +++|++++++   +++++|++|.++|++|.+.+    +++|
T Consensus       171 ~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l  249 (472)
T 3hmu_A          171 MAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEI  249 (472)
T ss_dssp             CHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHH
T ss_pred             ChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHH
Confidence                   11 11123333321         2        7888888862   34899999988888888876    9999


Q ss_pred             HHHHHhcCCEEEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhh--CCC
Q 013019          319 SDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL--GGA  390 (451)
Q Consensus       319 aelA~~~g~~lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~--G~~  390 (451)
                      .++|+++|++||+||++... ..     ........|+++  ++|.++|.+ ...|++++++++++.+.......  ...
T Consensus       250 ~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~-~plG~v~~~~~i~~~~~~~~~~~~~t~~  326 (472)
T 3hmu_A          250 QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGY-APIGGSIVCDEVAHVIGKDEFNHGYTYS  326 (472)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS-SCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred             HHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCC-cceEEEEECHHHHHhcccCCccccCCCC
Confidence            99999999999999997632 11     111223357775  679998743 35788899999988873211111  233


Q ss_pred             ccHHHHHHHHHhhHHHH--HHHHHHH-HHHHHHHHHHHc---CCCeEEEe
Q 013019          391 LNPNAAYLIIRGMKTLH--LRVQQQN-STALRMAEILEA---HPKVLLLF  434 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~--~Rl~~~~-~nA~~Lae~L~~---~p~V~~V~  434 (451)
                      .++..+..++..|+.+.  ..+++.. ++...+.+.|++   +|.|..|.
T Consensus       327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr  376 (472)
T 3hmu_A          327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAK  376 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            56777666666666543  2345555 566666666654   56665543

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.67  E-value=8e-16  Score=157.73  Aligned_cols=216  Identities=17%  Similarity=0.195  Sum_probs=146.0

Q ss_pred             CCchhHHHHHHHHHhhhC-CCcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHH----------HhhhcC
Q 013019          207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKM  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g-ae~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~----------~~l~~~  273 (451)
                      +.++...+|+++|+++++ .+..+++++|++|+..++....  ..+++||+.++.|.+......          ......
T Consensus        89 ~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  168 (427)
T 3fq8_A           89 APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP  168 (427)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCS
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCC
Confidence            378889999999999985 5778888899999999884332  345789998888866321100          000011


Q ss_pred             Cc------EEEEeCCCCHHHHHHhhcCC--CeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCc-
Q 013019          274 GI------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN-  340 (451)
Q Consensus       274 Gi------~v~~vd~~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~-  340 (451)
                      |+      .+..++..|+++|++++++.  ++++|++|.++|++|.+.+    +++|.++|++||++||+||+|..... 
T Consensus       169 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g  248 (427)
T 3fq8_A          169 GVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA  248 (427)
T ss_dssp             SSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTB
T ss_pred             CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence            11      24444556899999998752  5899999998899999988    99999999999999999999873311 


Q ss_pred             ----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-hhCC--CccHHHHHHHHHhhHHH--HHHHH
Q 013019          341 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTL--HLRVQ  411 (451)
Q Consensus       341 ----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-~~G~--~ls~~~a~l~lrgL~tl--~~Rl~  411 (451)
                          ........|++  |++|.+++ | .++|++++++++++.++.... ..+.  ..++..+..++..++.+  ...++
T Consensus       249 ~~~~~~~~~~~~di~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~  324 (427)
T 3fq8_A          249 YGGVQEKFGVTPDLT--TLGKIIGG-G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYE  324 (427)
T ss_dssp             TTHHHHHTTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             cchhhHhcCCCCChh--hhhhhhhC-C-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence                11122234654  67799985 4 578999999998887764321 1222  34677666666555543  22345


Q ss_pred             HHHHHHHHHHHHHHc
Q 013019          412 QQNSTALRMAEILEA  426 (451)
Q Consensus       412 ~~~~nA~~Lae~L~~  426 (451)
                      +..++.+.+.+.|++
T Consensus       325 ~~~~~~~~~~~~l~~  339 (427)
T 3fq8_A          325 YLDQITKRLSDGLLA  339 (427)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555666666665543

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.67  E-value=2e-15  Score=154.81  Aligned_cols=215  Identities=18%  Similarity=0.158  Sum_probs=146.2

Q ss_pred             CCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHH--HccCCCeEEEcCCCCcchHHHHHHhh----------hcC
Q 013019          207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETVL----------PKM  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~-gae~~vv~sSG~aAi~~al~a--ll~~GD~VIv~~~~Y~~t~~~l~~~l----------~~~  273 (451)
                      +.++...+|+++|++++ +.+.+++++||++|+..++..  .+..+|+||+.++.|.+.........          ...
T Consensus        89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~  168 (424)
T 2e7u_A           89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSA  168 (424)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESST
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCC
Confidence            56788899999999998 567888889999999998875  23446889999999977332110000          012


Q ss_pred             Cc------EEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCcc
Q 013019          274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ  341 (451)
Q Consensus       274 Gi------~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~~  341 (451)
                      |+      .+..++..|+++|++++++  +++++|++|..++++|.+.+    +++|.++ ++||++||+||++......
T Consensus       169 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g  247 (424)
T 2e7u_A          169 GVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA  247 (424)
T ss_dssp             TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS
T ss_pred             CCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc
Confidence            32      3444566789999998863  24777777543344898887    9999999 9999999999998733111


Q ss_pred             c-----cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-hhC--CCccHHHHHHHHHhhHHHH---HHH
Q 013019          342 K-----ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTLH---LRV  410 (451)
Q Consensus       342 ~-----pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-~~G--~~ls~~~a~l~lrgL~tl~---~Rl  410 (451)
                      .     ......|++  |++|.+++ | ..+|++++++++++.++.... ..+  ...++..+..++..++.+.   ...
T Consensus       248 ~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~  323 (424)
T 2e7u_A          248 FGGATELLGLKPDLV--TLGKILGG-G-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYY  323 (424)
T ss_dssp             TTHHHHHHTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHH
T ss_pred             hhHHHHHhCCCcchh--hhhhhhhC-C-cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence            1     112235765  78999996 4 568999999988877654211 111  2456666666555555443   245


Q ss_pred             HHHHHHHHHHHHHHHc
Q 013019          411 QQQNSTALRMAEILEA  426 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~  426 (451)
                      ++..++.+.+.+.|++
T Consensus       324 ~~~~~~~~~l~~~L~~  339 (424)
T 2e7u_A          324 AYLEDLGARLEAGLKE  339 (424)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666777777777765

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.66  E-value=6.4e-15  Score=154.59  Aligned_cols=226  Identities=13%  Similarity=0.125  Sum_probs=153.7

Q ss_pred             CCCchhHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHcc--------CCCeEEEcCCCCcchHHHHHHh------
Q 013019          206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV------  269 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all~--------~GD~VIv~~~~Y~~t~~~l~~~------  269 (451)
                      .+.++...+|+++|+++.+  .+.+++++||++|+..++..++.        .+++||+.++.|.+........      
T Consensus        93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~  172 (476)
T 3i5t_A           93 YMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGN  172 (476)
T ss_dssp             TCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGG
T ss_pred             ccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhh
Confidence            5778899999999999985  47788889999999999988764        3578999999998743221111      


Q ss_pred             ---hhcCCcEEEEeCCC--------C--------HHHHHHhhcC---CCeEEEEEeCCCCCcccccc----HHHHHHHHH
Q 013019          270 ---LPKMGITATVIDPA--------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCH  323 (451)
Q Consensus       270 ---l~~~Gi~v~~vd~~--------D--------~d~Le~ai~~---~~tklV~lesPsNPtG~v~D----L~~IaelA~  323 (451)
                         .......+.+++..        |        +++|++++++   +++++|++|.++|++|.+..    +++|.++|+
T Consensus       173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~  252 (476)
T 3i5t_A          173 WPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICE  252 (476)
T ss_dssp             CTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred             ccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH
Confidence               00011123333311        1        7888888862   34899999999999887554    999999999


Q ss_pred             hcCCEEEEecCCCCC-Cc-----cc-cccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHh-------HhhCC
Q 013019          324 KKGAIVCIDGTFATP-LN-----QK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGG  389 (451)
Q Consensus       324 ~~g~~lVVD~tfa~~-~~-----~~-pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~-------~~~G~  389 (451)
                      +||++||+||++... ..     .. ......|+++  ++|.+++ |-...|++++++++++.+....       .....
T Consensus       253 ~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~  329 (476)
T 3i5t_A          253 KHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTS-GYVPLGGLAISEAVLARISGENAKGSWFTNGYTY  329 (476)
T ss_dssp             HTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTT
T ss_pred             HcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcC-CCcCeEEEEECHHHHHHHhcCCcccccccccCCC
Confidence            999999999997632 11     11 1222357775  6799986 2145788999999988876531       11123


Q ss_pred             CccHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc---CCCeEEEe
Q 013019          390 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEA---HPKVLLLF  434 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~--~Rl~~~~~nA~~Lae~L~~---~p~V~~V~  434 (451)
                      ..++..+..++..|+.+.  ..+++..++.+.+.+.|++   +|.+..+.
T Consensus       330 ~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~  379 (476)
T 3i5t_A          330 SNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRDLPGVAETR  379 (476)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEE
T ss_pred             CcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            456777766666666543  2356666777777777764   45565543

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.65  E-value=4.6e-15  Score=154.39  Aligned_cols=228  Identities=13%  Similarity=0.098  Sum_probs=144.9

Q ss_pred             ccccCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHhh------
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVL------  270 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~l------  270 (451)
                      +.+.++.++...+|+++|+++.+   .+.+++++||++|+..++..+..  .+++||+.++.|.+........-      
T Consensus        99 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~  178 (453)
T 4ffc_A           99 TCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPY  178 (453)
T ss_dssp             CTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred             cccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCccc
Confidence            44556788999999999999986   35688889999999999976543  45889999999987433221110      


Q ss_pred             ----hcCCcEEEEeCCC----C-------------HHHHHHhhcCCCeEEEEEeCCCCCc-ccccc----HHHHHHHHHh
Q 013019          271 ----PKMGITATVIDPA----D-------------MEGLEAALNNNNVSLFFTESPTNPF-LRCVD----VKLVSDLCHK  324 (451)
Q Consensus       271 ----~~~Gi~v~~vd~~----D-------------~d~Le~ai~~~~tklV~lesPsNPt-G~v~D----L~~IaelA~~  324 (451)
                          ......+..++..    |             ++.|++++.++++.+|++| |.|++ |.+.+    +++|.++|++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~e-p~~~~gG~~~~~~~~l~~l~~l~~~  257 (453)
T 4ffc_A          179 KSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIE-PIQGEGGFIVPAPGFLATLTAWASE  257 (453)
T ss_dssp             TTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEEC-SSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             ccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEc-CCCCCCCcccCCHHHHHHHHHHHHH
Confidence                0111133444322    2             3667777755446666665 55555 45544    9999999999


Q ss_pred             cCCEEEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHH
Q 013019          325 KGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL  398 (451)
Q Consensus       325 ~g~~lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l  398 (451)
                      ||++||+||+|... ..     ........|++  +++|.+++ | .+.|++++++++++.++..........++..+..
T Consensus       258 ~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aa  333 (453)
T 4ffc_A          258 NGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG-G-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAA  333 (453)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHH
T ss_pred             cCCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC-C-cCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHH
Confidence            99999999997532 11     11112234555  57899987 5 5788999999888877644332233456776666


Q ss_pred             HHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCCCeEEEe
Q 013019          399 IIRGMKTLHL--RVQQQNSTALRMAEIL----EAHPKVLLLF  434 (451)
Q Consensus       399 ~lrgL~tl~~--Rl~~~~~nA~~Lae~L----~~~p~V~~V~  434 (451)
                      ++..|+.+..  .+++..++.+.+.+.|    .++|.+..+.
T Consensus       334 a~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  375 (453)
T 4ffc_A          334 AVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVR  375 (453)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence            5555554322  2344444444444444    4567665543

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.63  E-value=6.8e-15  Score=152.85  Aligned_cols=221  Identities=13%  Similarity=0.096  Sum_probs=144.1

Q ss_pred             cCCCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHc---c-C----------CCeEEEcCCCCcchHHHH-
Q 013019          205 GRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV---P-A----------GGHIVTTTDCYRKTRIFI-  266 (451)
Q Consensus       205 ~R~~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all---~-~----------GD~VIv~~~~Y~~t~~~l-  266 (451)
                      .+|.++...+|+++|+++++   .++.++++||++|+..++..+.   + +          ||+||+.++.|.+..... 
T Consensus        96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~  175 (449)
T 2cjg_A           96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL  175 (449)
T ss_dssp             TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred             cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence            35778888999999999985   3677888899999999887543   2 2          899999999997632210 


Q ss_pred             ---------HHhhhcCCcEEEEeCCCC---------------HHHHHHhhc--CCCeEEEEEeCCCCCcccccc----HH
Q 013019          267 ---------ETVLPKMGITATVIDPAD---------------MEGLEAALN--NNNVSLFFTESPTNPFLRCVD----VK  316 (451)
Q Consensus       267 ---------~~~l~~~Gi~v~~vd~~D---------------~d~Le~ai~--~~~tklV~lesPsNPtG~v~D----L~  316 (451)
                               ......+...+.+++..|               +++|+++++  ..++++|++|.++||+|...+    ++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~  255 (449)
T 2cjg_A          176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA  255 (449)
T ss_dssp             GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred             hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence                     011111112455555444               234888885  135899999877799997666    99


Q ss_pred             HHHHHHHhcCCEEEEecCCCCC-Cc-----cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHH-----HhH
Q 013019          317 LVSDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-----LHH  385 (451)
Q Consensus       317 ~IaelA~~~g~~lVVD~tfa~~-~~-----~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~-----~~~  385 (451)
                      +|.++|++||++||+||+|... ..     ........|++  +++|.+  +    .|++++++++++.+..     ...
T Consensus       256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~----iG~~~~~~~~~~~l~~~~~~~~~~  327 (449)
T 2cjg_A          256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q----VCGVMAGRRVDEVADNVFAVPSRL  327 (449)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S----SEEEEECGGGGGSTTCTTTSTTSS
T ss_pred             HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc--c----EEEEEECHHHhhhhhhcccCCccc
Confidence            9999999999999999998632 11     12223345766  578988  2    5777888887765321     111


Q ss_pred             hhCCCccHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHc----CCC-eEEE
Q 013019          386 VLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEA----HPK-VLLL  433 (451)
Q Consensus       386 ~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~nA~~Lae~L~~----~p~-V~~V  433 (451)
                      ......++..+..++..|+.+.  ...++..++...+.+.|++    +|. +..+
T Consensus       328 ~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~  382 (449)
T 2cjg_A          328 NSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP  382 (449)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE
Confidence            1112345666665555555432  2345566677777777764    465 5443

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.61  E-value=7.4e-14  Score=144.89  Aligned_cols=219  Identities=16%  Similarity=0.091  Sum_probs=135.5

Q ss_pred             ccccCCCchhHHHHHHHHHhhh-CC------CcEEEeCCHHHHHHHHHHH----HccCCCeEEEcCCCCcchHHHHHHhh
Q 013019          202 FEYGRYGNPTTVVVEEKMSALE-GA------ESTVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVL  270 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~-ga------e~~vv~sSG~aAi~~al~a----ll~~GD~VIv~~~~Y~~t~~~l~~~l  270 (451)
                      +.|.  +.....+|++.++++. |.      ...+.+.+|+.|+..++..    ++.+||+|++++|.|+.....+    
T Consensus        81 ~~Y~--p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~----  154 (420)
T 4h51_A           81 YEYL--PISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVV----  154 (420)
T ss_dssp             CCCC--CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHH----
T ss_pred             CCCC--CcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHH----
Confidence            4565  3444556777777764 32      1233456777776655543    4579999999999999866544    


Q ss_pred             hcCCcE-EEE---eCC----CCHHHHHHhhc--CCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCC
Q 013019          271 PKMGIT-ATV---IDP----ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT  337 (451)
Q Consensus       271 ~~~Gi~-v~~---vd~----~D~d~Le~ai~--~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~  337 (451)
                      +..|.+ +..   .+.    .|.+.+.+.+.  ..+++++++.+|+||||.+.+   +++|+++|+++++++++|++|..
T Consensus       155 ~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~  234 (420)
T 4h51_A          155 KAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQG  234 (420)
T ss_dssp             HHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred             HHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhh
Confidence            334543 322   221    26666666553  224789999999999999985   77899999999999999999865


Q ss_pred             CCccc----c------ccCC-CcEEEECCcccCCccccceeEEEEeCHHHHH-------HHHHHhHhhCCCccHHHHHHH
Q 013019          338 PLNQK----A------LSLG-ADLVLHSATKFIGGHNDVLAGSISGSGKLVT-------QIRNLHHVLGGALNPNAAYLI  399 (451)
Q Consensus       338 ~~~~~----p------l~~G-aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-------~lr~~~~~~G~~ls~~~a~l~  399 (451)
                      .....    +      .+.+ .-+++.|+||.++..|. +.|++++..+..+       ++.........+.+...+..+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~  313 (420)
T 4h51_A          235 YASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSE-RAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLA  313 (420)
T ss_dssp             TTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             hccCCcccchHHHHhHHhhCceEEEEeccccccccccC-ceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHH
Confidence            43211    1      1111 24889999999998874 5677665433222       222233333344455554443


Q ss_pred             HHhh----------HHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          400 IRGM----------KTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       400 lrgL----------~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ...+          +.+....+++.+.++.|.+.|++.
T Consensus       314 ~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~  351 (420)
T 4h51_A          314 HLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL  351 (420)
T ss_dssp             HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3322          123333455666777788888765

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=150.84  Aligned_cols=203  Identities=10%  Similarity=0.117  Sum_probs=139.8

Q ss_pred             HHHHHhhhCCC---cEEEeCCHHHHHHHHHHHHccC----CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC------
Q 013019          216 EEKMSALEGAE---STVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------  282 (451)
Q Consensus       216 ee~LA~l~gae---~~vv~sSG~aAi~~al~all~~----GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~------  282 (451)
                      .++|..+ |.+   ..++++.++.++.+++++.+++    ||.||+++.+|.+.+..    +...|++..++++      
T Consensus       123 ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kA----liL~Gl~Pv~V~p~~d~~~  197 (501)
T 3hl2_A          123 LDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS----MITAGFEPVVIENVLEGDE  197 (501)
T ss_dssp             HHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH----HHHTTCEEEEECEEEETTE
T ss_pred             HHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHH----HHHcCCeEEEEeeeecccc
Confidence            4444444 643   3556666666777777777774    49999999999887644    3445777777654      


Q ss_pred             --CCHHHHHHhhcCC---CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc------cccccCC-CcE
Q 013019          283 --ADMEGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------QKALSLG-ADL  350 (451)
Q Consensus       283 --~D~d~Le~ai~~~---~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~------~~pl~~G-aDi  350 (451)
                        .|+++|+++|+++   .+.+|+..+++|..+.+.||++|+++||+||++++|||+|+.-+.      ...+.+| +|+
T Consensus       198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~  277 (501)
T 3hl2_A          198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA  277 (501)
T ss_dssp             EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence              2789999999652   234555544455445668999999999999999999999887531      2345668 999


Q ss_pred             EEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCC--CccHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG--ALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~--~ls~~~a~l~l--rgL~tl~~Rl~~~~~nA~~Lae~L~  425 (451)
                      ++.|++|.+-.+-  .||++.. ++++++++....  .|.  .....+.|+.+  .|.+.+...+++..++++.+.+.|+
T Consensus       278 vVqS~HK~llvpI--GG~ii~~~d~e~l~~~~~~y--PGr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~  353 (501)
T 3hl2_A          278 FVQSLDKNFMVPV--GGAIIAGFNDSFIQEISKMY--PGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIK  353 (501)
T ss_dssp             EEEEHHHHHCCCS--SCEEEEESCHHHHHHHHHTS--CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccceeec--CceEEEeCCHHHHHHHHHhC--CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987662  2444434 567777764432  232  22334456544  3556677778888899999999988


Q ss_pred             cC
Q 013019          426 AH  427 (451)
Q Consensus       426 ~~  427 (451)
                      +.
T Consensus       354 ~l  355 (501)
T 3hl2_A          354 KL  355 (501)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.58  E-value=4e-14  Score=147.77  Aligned_cols=210  Identities=10%  Similarity=0.102  Sum_probs=141.0

Q ss_pred             HHHHHHHHhhhCCCc---EEEeCCHHHHHHHHHHHHccC----CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          213 VVVEEKMSALEGAES---TVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       213 ~~Lee~LA~l~gae~---~vv~sSG~aAi~~al~all~~----GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      +.++.++.++.|.+.   .+++++++.++.+++++.+++    |+.||+++.+|.+...    .+...|+...++++   
T Consensus       101 ~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~k----Al~l~Gl~p~~v~~~~~  176 (450)
T 3bc8_A          101 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFK----SMVTAGFEPVVIENVLE  176 (450)
T ss_dssp             HHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHH----HHHHTTCEEEEECCEEE
T ss_pred             HHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHH----HHHHcCCeeEEEEeeec
Confidence            345666677778642   366666664444455555554    8999999999988764    34456777776654   


Q ss_pred             -----CCHHHHHHhhcCCC--eEEEEEeCCCC-CccccccHHHHHHHHHhcCCEEEEecCCCCCCcc------ccccC-C
Q 013019          283 -----ADMEGLEAALNNNN--VSLFFTESPTN-PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSL-G  347 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~--tklV~lesPsN-PtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~------~pl~~-G  347 (451)
                           .|+++|+++|++++  .+++++.+|++ .+|.+.||++|+++||+||++++||++|+.....      ..++. +
T Consensus       177 ~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~  256 (450)
T 3bc8_A          177 GDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGR  256 (450)
T ss_dssp             TTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSC
T ss_pred             CccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhcccC
Confidence                 37999999996521  34444545654 3568899999999999999999999999864221      22333 7


Q ss_pred             CcEEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      +|+++.|+||++..+-  .++++.. ++++++++.......+...+.++.|..++  |.+.+...+++..++++.+.+.|
T Consensus       257 AD~~v~S~HK~l~a~~--~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l  334 (450)
T 3bc8_A          257 IDAFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQL  334 (450)
T ss_dssp             CCEEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCccCCCchh--ccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998774  3666664 56666665443211122223345554433  44556666777788899999988


Q ss_pred             HcCC
Q 013019          425 EAHP  428 (451)
Q Consensus       425 ~~~p  428 (451)
                      ++.+
T Consensus       335 ~~~~  338 (450)
T 3bc8_A          335 KKLA  338 (450)
T ss_dssp             HHHH
T ss_pred             HhhH
Confidence            7766

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.56  E-value=7.8e-14  Score=144.58  Aligned_cols=215  Identities=17%  Similarity=0.128  Sum_probs=141.9

Q ss_pred             CchhHHHHH----HHHHhhhCCCcE-----EEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHH--HH--hhhcCC
Q 013019          208 GNPTTVVVE----EKMSALEGAEST-----VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI--ET--VLPKMG  274 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~~-----vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l--~~--~l~~~G  274 (451)
                      |+...+.+|    ++..+++|++.+     |=.-||+.|+.+++++|++|||+|+..+..+|+....-  ..  .....|
T Consensus        94 Gce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg  173 (490)
T 3ou5_A           94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  173 (490)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------
T ss_pred             CChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCccccccc
Confidence            555566554    456678898653     55679999999999999999999999999988843211  00  000111


Q ss_pred             cEEEEe----C----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCC-----CCCCcc
Q 013019          275 ITATVI----D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQ  341 (451)
Q Consensus       275 i~v~~v----d----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tf-----a~~~~~  341 (451)
                      .-+..+    |    ..|.|++++...+.++|+|++-.  +-..+..|.+++.+||++.|++|++|-++     +.+..+
T Consensus       174 ~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~--SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p  251 (490)
T 3ou5_A          174 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT--SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP  251 (490)
T ss_dssp             ------CBCEETTTTEECHHHHHHHHHHHCCSEEEECC--SSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC
T ss_pred             ccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECC--ccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccC
Confidence            111111    1    13889998888766789999843  34568889999999999999999999995     456778


Q ss_pred             ccccCCCcEEEECCcccCCccccceeEEEEeCH---------------HHHHHHHHHhH--hhCCCccHHHHHHH---HH
Q 013019          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLHH--VLGGALNPNAAYLI---IR  401 (451)
Q Consensus       342 ~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~---------------eli~~lr~~~~--~~G~~ls~~~a~l~---lr  401 (451)
                      +|+++ +|+|..|+||+|.|+.   ||+|..++               ++.+++...-.  ..|+...-..+..+   ..
T Consensus       252 sP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~E  327 (490)
T 3ou5_A          252 SPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ  327 (490)
T ss_dssp             CGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH
T ss_pred             Ccccc-ceEEeccccccccCCC---ceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHH
Confidence            99987 9999999999999995   99999775               45666765432  22332222222221   22


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          402 GM-KTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       402 gL-~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      .+ ..+....++..+||+.|++.|.++.
T Consensus       328 a~~p~fk~Ya~qVv~NAkaLA~~L~~~G  355 (490)
T 3ou5_A          328 ACTPMFREYSLQVLKNARAMADALLERG  355 (490)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            22 2455667888999999999999874

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.32  E-value=3.6e-16  Score=164.30  Aligned_cols=215  Identities=15%  Similarity=0.128  Sum_probs=145.3

Q ss_pred             CCCchhHHHHHHHHHhhh-CCCcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcch-HHHHHHhhhcCCc--EEEE
Q 013019          206 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKT-RIFIETVLPKMGI--TATV  279 (451)
Q Consensus       206 R~~npt~~~Lee~LA~l~-gae~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t-~~~l~~~l~~~Gi--~v~~  279 (451)
                      +|.++...+|+++|++++ +.+.+++++||++|+..++..+.  ..+|+||+.+..|.+. ...+.. ....|+  .+..
T Consensus       136 ~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg-~~~~g~~~~~~~  214 (465)
T 2yky_A          136 STQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASG-HAPTNAPYHVVL  214 (465)
Confidence            457888899999999999 67888889999999999987642  3458999999999663 322200 012234  3334


Q ss_pred             eCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCCCccccc---cCC--C
Q 013019          280 IDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQKAL---SLG--A  348 (451)
Q Consensus       280 vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~~~~~pl---~~G--a  348 (451)
                      ++..|+++|++++++  .++++|++|...|++|.+.+    +++|.++|+++|++||+||++. .......   .+|  .
T Consensus       215 ~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~p  293 (465)
T 2yky_A          215 GVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISA  293 (465)
Confidence            455688999999973  25899999887777997776    9999999999999999999988 4211111   113  3


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHH-----hHhhCCCccHHHHHHHHHhhHHHH--HHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMA  421 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~-----~~~~G~~ls~~~a~l~lrgL~tl~--~Rl~~~~~nA~~La  421 (451)
                      |+  .+++|++++ | ...|++++++++++.+...     ........++..+..++..|+.+.  ...++..+..+.+.
T Consensus       294 Di--~t~sK~lg~-G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~  369 (465)
T 2yky_A          294 DL--TTLGKYIGG-G-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFR  369 (465)
Confidence            54  479999997 4 5689999999998887651     111112345555554444444332  22344445555555


Q ss_pred             HHHHc
Q 013019          422 EILEA  426 (451)
Q Consensus       422 e~L~~  426 (451)
                      +.|++
T Consensus       370 ~~L~~  374 (465)
T 2yky_A          370 ANLNR  374 (465)
Confidence            55543

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=133.54  Aligned_cols=208  Identities=13%  Similarity=0.045  Sum_probs=140.0

Q ss_pred             hHHHHHHHHHhhhCCC--cEEEe--CCHHHHHHHHHHHHccC--CCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          211 TTVVVEEKMSALEGAE--STVIM--ASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae--~~vv~--sSG~aAi~~al~all~~--GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      ..++.++.|++++|++  ..++|  ++|++++.+++..++.+  ||+|++....+.+. .++ ..+++.|..+.+++.  
T Consensus        59 ~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~-~~~-~~a~~~G~~~~~~~~~~  136 (377)
T 3e77_A           59 IINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSA-KAA-EEAKKFGTINIVHPKLG  136 (377)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHH-HHH-HHHTTTSEEEECSCCCS
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHH-HHH-HHHHHhCCceEEeccCC
Confidence            3566789999999974  34444  46779999999999876  99988766655543 233 456788887776543  


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCccc
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKF  358 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~  358 (451)
                         .++++++.++++ +|++|.+.+-.|.+|.+.|+     +|+++|+++++|.+.+.+. ..+.-++|  +++.|.+|+
T Consensus       137 ~~~~~~~~~~~~i~~-~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~  208 (377)
T 3e77_A          137 SYTKIPDPSTWNLNP-DASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKN  208 (377)
T ss_dssp             SSCSCCCGGGCCCCT-TCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGT
T ss_pred             CcCCCCChHHhccCC-CccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccc
Confidence               245666667776 49999988777788999998     4778999999999976542 22322444  688999999


Q ss_pred             CCccccceeEEEEeCHHHHHHHH----------HHh--HhhCCCccHHHHHHHHHhhHH------HHHHHHHHHHHHHHH
Q 013019          359 IGGHNDVLAGSISGSGKLVTQIR----------NLH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALRM  420 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~~eli~~lr----------~~~--~~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA~~L  420 (451)
                      +|++|   .|+++.++++++++.          ...  .....+++....+.+..+++.      +..+.++..+.++.+
T Consensus       209 ~gp~G---~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l  285 (377)
T 3e77_A          209 VGSAG---VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTI  285 (377)
T ss_dssp             TSCTT---CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCc---cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            97666   677777665543221          110  011223444444444444443      344456667788888


Q ss_pred             HHHHHcCCCeE
Q 013019          421 AEILEAHPKVL  431 (451)
Q Consensus       421 ae~L~~~p~V~  431 (451)
                      .+.|++.|++.
T Consensus       286 ~~~L~~~~g~~  296 (377)
T 3e77_A          286 YEIIDNSQGFY  296 (377)
T ss_dssp             HHHHHTSTTSE
T ss_pred             HHHHHhcCCce
Confidence            89999888764

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.38  E-value=4.3e-12  Score=132.89  Aligned_cols=205  Identities=13%  Similarity=0.172  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHHc-------c------------------CC---CeEEEcCCCCc
Q 013019          211 TTVVVEEKMSALE--GAESTVIMASGMSASTVMLLALV-------P------------------AG---GHIVTTTDCYR  260 (451)
Q Consensus       211 t~~~Lee~LA~l~--gae~~vv~sSG~aAi~~al~all-------~------------------~G---D~VIv~~~~Y~  260 (451)
                      ..+.|+++|+++.  +.+.+++++||++|+..++..+.       +                  +|   ++||+.++.|.
T Consensus       111 l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yH  190 (472)
T 1ohv_A          111 FVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFH  190 (472)
T ss_dssp             HHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred             HHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcc
Confidence            3444455455555  45788899999999999997763       1                  46   89999999987


Q ss_pred             chHH-HHHHh----hhcCCcEE-----EEeC----C-------------CCHHHHHHhhcCC-----CeEEEEEeCCCCC
Q 013019          261 KTRI-FIETV----LPKMGITA-----TVID----P-------------ADMEGLEAALNNN-----NVSLFFTESPTNP  308 (451)
Q Consensus       261 ~t~~-~l~~~----l~~~Gi~v-----~~vd----~-------------~D~d~Le~ai~~~-----~tklV~lesPsNP  308 (451)
                      +... .+...    ....+...     ..++    .             .|+++|++++++.     ++++|++|..+|+
T Consensus       191 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~  270 (472)
T 1ohv_A          191 GRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSE  270 (472)
T ss_dssp             CSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCT
T ss_pred             cccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCC
Confidence            7332 22110    00112110     0111    0             1578899888751     4899999988889


Q ss_pred             cccccc----HHHHHHHHHhcCCEEEEecCCCC-CCcc---ccccCC----CcEEEECCccc-CCccccceeEEEEeCHH
Q 013019          309 FLRCVD----VKLVSDLCHKKGAIVCIDGTFAT-PLNQ---KALSLG----ADLVLHSATKF-IGGHNDVLAGSISGSGK  375 (451)
Q Consensus       309 tG~v~D----L~~IaelA~~~g~~lVVD~tfa~-~~~~---~pl~~G----aDiVv~S~SK~-l~G~gdv~gG~Iv~~~e  375 (451)
                      +|.+.+    +++|.++|++||++||+|+++.. +...   ....+|    .|++  +++|. ++      ||+++ +++
T Consensus       271 ~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~~~  341 (472)
T 1ohv_A          271 GGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-KEE  341 (472)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-CGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-chh
Confidence            998877    99999999999999999999752 1111   111234    5765  67798 44      36666 555


Q ss_pred             HHHHHHHHhHhhCC-CccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHc
Q 013019          376 LVTQIRNLHHVLGG-ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEA  426 (451)
Q Consensus       376 li~~lr~~~~~~G~-~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L~~  426 (451)
                      +. .+.... ..+. ..++..+..++..|+.+..  ..++..+..+.+.+.|++
T Consensus       342 ~~-~~~~~~-~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~  393 (472)
T 1ohv_A          342 FR-PNAPYR-IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLD  393 (472)
T ss_dssp             GS-CSSSSS-SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hc-cccccc-ccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            42 111111 1121 3466666555555554322  244555566666666654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.30  E-value=6.6e-12  Score=128.84  Aligned_cols=155  Identities=14%  Similarity=0.025  Sum_probs=111.1

Q ss_pred             chhHHHHHHHHHhhhCCC--cEEEe--CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC-
Q 013019          209 NPTTVVVEEKMSALEGAE--STVIM--ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae--~~vv~--sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~-  283 (451)
                      ....++.++.|++++|++  ..++|  ++|++++.+++..++++||+|++....+.+.. +. ..+++.| ++++++.+ 
T Consensus        71 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~-~~-~~a~~~G-~v~~v~~~~  147 (386)
T 3qm2_A           71 IQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAAS-AI-KEAKKYC-APQIIDAKI  147 (386)
T ss_dssp             --CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHH-HH-HHHTTTS-EEEEEECEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHH-HH-HHHHHhC-CeEEEecCc
Confidence            345677899999999984  33444  58889999999999999999875544444432 22 3456778 77766432 


Q ss_pred             -------CHHHHHHhhcCCCeEEEEEeCCCCCcccc-ccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEEC
Q 013019          284 -------DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS  354 (451)
Q Consensus       284 -------D~d~Le~ai~~~~tklV~lesPsNPtG~v-~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S  354 (451)
                             ++++++.+++++ |++|.+.+-.|.+|.+ .|+++|.     +|+++++|.+.+.+. ..+.-++  |+++.|
T Consensus       148 ~~~G~~~~~~~~~~~l~~~-t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~--~~~~~s  219 (386)
T 3qm2_A          148 TVDGKRAVKPMREWQLSDN-AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY--GVIYAG  219 (386)
T ss_dssp             EETTEEEECCGGGCCCCTT-CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC--SEEEEE
T ss_pred             ccCCCCCCchHHHhhcCCC-CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc--CEEEEe
Confidence                   456777788774 9999887767778996 8888885     799999999976542 2222244  467899


Q ss_pred             CcccCCccccceeEEEEeCHHHH
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLV  377 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli  377 (451)
                      .+|++|..|   .|+++.+++++
T Consensus       220 ~hK~lGP~G---~g~l~v~~~~~  239 (386)
T 3qm2_A          220 AQKNIGPAG---LTLVIVREDLL  239 (386)
T ss_dssp             TTTTTCCTT---EEEEEEEGGGC
T ss_pred             cccccCCCc---cEEEEECHHHH
Confidence            999997655   78888777654

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.30  E-value=1.8e-11  Score=124.54  Aligned_cols=203  Identities=12%  Similarity=0.072  Sum_probs=131.4

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEe--CCHHHHHHHHHHHHccCCCeEE-EcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          210 PTTVVVEEKMSALEGAE--STVIM--ASGMSASTVMLLALVPAGGHIV-TTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~--sSG~aAi~~al~all~~GD~VI-v~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      ...++.++.|++++|++  ..++|  ++|++++.+++..++ +||+++ +....| +. .+. ..+++.|+++++++.  
T Consensus        50 ~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~-~~-~~~-~~a~~~G~~v~~~~~~~  125 (361)
T 3m5u_A           50 EVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVW-TK-KAI-KEAQILGVNVKTVASSE  125 (361)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHH-HH-HHH-HHHHHTTCCEEEEEECT
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHH-HH-HHH-HHHHHcCCceEEEeccc
Confidence            34566789999999983  34444  566699999999998 888652 222233 22 222 345667888877642  


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATK  357 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK  357 (451)
                           .+++.  + |++ +|++|.+.+..|.+|.+.|.     +++ +|+++++|.+.+.+...-.++ ..|+++.|.+|
T Consensus       126 ~g~~~~~~~~--~-l~~-~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~-~~d~~~~s~~K  194 (361)
T 3m5u_A          126 ESNFDHIPRV--E-FSD-NADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS-NIALFYGGVQK  194 (361)
T ss_dssp             TTTSCSCCCC--C-CCT-TSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT-TEEEEEEETTT
T ss_pred             CcCCCcCChh--h-cCC-CCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc-cCCEEEEechh
Confidence                 23444  3 776 49999998777788998662     344 499999999976542211112 36899999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHH--------HhH-----hhCCCccHHHHHHHHHhhHH------HHHHHHHHHHHHH
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRN--------LHH-----VLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL  418 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~--------~~~-----~~G~~ls~~~a~l~lrgL~t------l~~Rl~~~~~nA~  418 (451)
                      ++|.+|   .|+++.++++++++..        +..     ....+.+....+.+..+++.      +..+.++..+.++
T Consensus       195 ~~gp~G---~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~  271 (361)
T 3m5u_A          195 NAGISG---LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAT  271 (361)
T ss_dssp             TSSCTT---CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             ccCCCc---cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            997665   7888889888877653        000     01123343344444444443      3344556667788


Q ss_pred             HHHHHHHcCCCe
Q 013019          419 RMAEILEAHPKV  430 (451)
Q Consensus       419 ~Lae~L~~~p~V  430 (451)
                      .+.+.|++.+++
T Consensus       272 ~l~~~L~~~~g~  283 (361)
T 3m5u_A          272 MLYECIDLSNGF  283 (361)
T ss_dssp             HHHHHHHTSTTS
T ss_pred             HHHHHHHHCCCe
Confidence            888899988866

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.29  E-value=3.3e-11  Score=126.14  Aligned_cols=224  Identities=14%  Similarity=0.116  Sum_probs=146.2

Q ss_pred             CchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHcc--CCCeEEEcCCCCcchHHHHHHh--hhcCCcEEEEeCC
Q 013019          208 GNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV--LPKMGITATVIDP  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~ga-e~~vv~sSG~aAi~~al~all~--~GD~VIv~~~~Y~~t~~~l~~~--l~~~Gi~v~~vd~  282 (451)
                      .++...+|+++|+++... +.+.+++||++|+..++.....  ..++||..+.+|.+........  .......+..++.
T Consensus       125 ~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~  204 (454)
T 4ao9_A          125 HNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY  204 (454)
T ss_dssp             EESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT
T ss_pred             CcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC
Confidence            356677899999998854 6777789999999999876532  3467888888887632110000  0112334556677


Q ss_pred             CCHHHHHHhhcCC--CeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCC----CCccccccCCCcEEE
Q 013019          283 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLNQKALSLGADLVL  352 (451)
Q Consensus       283 ~D~d~Le~ai~~~--~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~----~~~~~pl~~GaDiVv  352 (451)
                      .|++.+++.++++  ++.+|++|...+..|.+.+    |++|.++|++||++||+||++..    ...+.-...-.|+++
T Consensus       205 nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t  284 (454)
T 4ao9_A          205 NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT  284 (454)
T ss_dssp             TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE
T ss_pred             chHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE
Confidence            8999999988642  4899999988777787765    99999999999999999998742    111222223358876


Q ss_pred             ECCcccCCccccceeEEEEeCHHHHHHHHHHh--HhhCC--CccHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHH-
Q 013019          353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGG--ALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAEILE-  425 (451)
Q Consensus       353 ~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~--~~~G~--~ls~~~a~l~lrgL~tl--~~Rl~~~~~nA~~Lae~L~-  425 (451)
                        +.|.++|.  ...|++.+++++++.+....  ...+.  ..+|..+...+..|+.+  +...++..++.++|.+.|+ 
T Consensus       285 --~gK~lggG--~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~  360 (454)
T 4ao9_A          285 --LGKYIGGG--MSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA  360 (454)
T ss_dssp             --EEGGGGTT--SSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --eccccCCC--CcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence              78999865  35788899998887664311  11222  23577666555555544  2234555555666665554 


Q ss_pred             ---cCCCeEEEec
Q 013019          426 ---AHPKVLLLFI  435 (451)
Q Consensus       426 ---~~p~V~~V~y  435 (451)
                         +++.+..|+.
T Consensus       361 l~~~~~~~~~vrg  373 (454)
T 4ao9_A          361 LCANEGVAMQFTG  373 (454)
T ss_dssp             HHHHHTBSCEEEE
T ss_pred             HHhhCCCCEEEee
Confidence               4555544443

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.11  E-value=6.4e-09  Score=108.83  Aligned_cols=227  Identities=15%  Similarity=0.098  Sum_probs=134.8

Q ss_pred             CchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcc-hHHHHHHhh---------hc
Q 013019          208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRK-TRIFIETVL---------PK  272 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~-t~~~l~~~l---------~~  272 (451)
                      .++...+|.++|.++...   +.+++++||++|+..++....  ....+|+..+..|.+ +...+....         ..
T Consensus       105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p  184 (456)
T 4atq_A          105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGP  184 (456)
T ss_dssp             CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred             CcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCC
Confidence            455666788999998753   457778999999999886432  234678888888876 332222110         01


Q ss_pred             CCcEEEEeCC-----------CCHHH-------HHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEE
Q 013019          273 MGITATVIDP-----------ADMEG-------LEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVC  330 (451)
Q Consensus       273 ~Gi~v~~vd~-----------~D~d~-------Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lV  330 (451)
                      +...+..++.           .+.+.       +++.+..+++.+|++|....-.|.+.+    +++|.++|++||+++|
T Consensus       185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI  264 (456)
T 4atq_A          185 FAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFI  264 (456)
T ss_dssp             CCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEE
T ss_pred             ccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceE
Confidence            1122333332           12222       333333345899999987766666543    8999999999999999


Q ss_pred             EecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH
Q 013019          331 IDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK  404 (451)
Q Consensus       331 VD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~  404 (451)
                      +||++..    +  +.++....-.||++  +.|.++|.  ...|.+++++++.+.+..........-+|..+..++..|+
T Consensus       265 ~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lggg--~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~  340 (456)
T 4atq_A          265 ADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAGG--LPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAID  340 (456)
T ss_dssp             EECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTT--SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred             ecccccccCCccccccccccCCCCchhh--hhhcccCc--CCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHH
Confidence            9998543    1  22332333469887  56888754  3577888888887765433221112346777776666666


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHH----c-----CCCeEEEecCCC
Q 013019          405 TLHLR--VQQQNSTALRMAEILE----A-----HPKVLLLFITLL  438 (451)
Q Consensus       405 tl~~R--l~~~~~nA~~Lae~L~----~-----~p~V~~V~yPgL  438 (451)
                      .+...  +++..+..+.+.+.|+    +     +|.|..|+.-||
T Consensus       341 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl  385 (456)
T 4atq_A          341 TMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGA  385 (456)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETT
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecce
Confidence            55421  2333333333333333    2     466777765443

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.07  E-value=2.4e-08  Score=105.04  Aligned_cols=228  Identities=14%  Similarity=0.123  Sum_probs=141.0

Q ss_pred             CchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc-------cCC-CeEEEcCCCCcc-hHHHHHHh----hhc
Q 013019          208 GNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRK-TRIFIETV----LPK  272 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all-------~~G-D~VIv~~~~Y~~-t~~~l~~~----l~~  272 (451)
                      .++...+|.++|.++.+.  +.+.+++||++|+..++....       +++ .+||.....|.+ |...+...    ...
T Consensus       109 ~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~  188 (473)
T 4e3q_A          109 MSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSV  188 (473)
T ss_dssp             EEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGG
T ss_pred             cCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccc
Confidence            356667788999998853  578888999999999987543       122 468888878766 33222111    011


Q ss_pred             CC---cEEEEeCCC----------C--------HHHHHHhhc---CCCeEEEEEeCCCCCcccccc----HHHHHHHHHh
Q 013019          273 MG---ITATVIDPA----------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK  324 (451)
Q Consensus       273 ~G---i~v~~vd~~----------D--------~d~Le~ai~---~~~tklV~lesPsNPtG~v~D----L~~IaelA~~  324 (451)
                      ++   .....++..          .        .+++++.+.   .+++.+|++|....-.|.+.+    +++|.++|++
T Consensus       189 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~  268 (473)
T 4e3q_A          189 FGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK  268 (473)
T ss_dssp             GTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH
T ss_pred             cCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcc
Confidence            11   112222211          0        234444443   224889999987766665543    8999999999


Q ss_pred             cCCEEEEecCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh-----hCC--Cc
Q 013019          325 KGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV-----LGG--AL  391 (451)
Q Consensus       325 ~g~~lVVD~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~-----~G~--~l  391 (451)
                      +|++||+||++...      +.+.-...-.||++  +.|.++|.. ...|.+++++++.+.+......     .|.  .-
T Consensus       269 ~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~-~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~G  345 (473)
T 4e3q_A          269 YDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGF-FPMGAVILGPELSKRLETAIEAIEEFPHGFTASG  345 (473)
T ss_dssp             TTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTT
T ss_pred             cceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCC-CCcccccccHHHHHHhccccccccccccCCCCCC
Confidence            99999999995431      22222233468887  689997653 3578888999998887653221     122  23


Q ss_pred             cHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHH---HcCCCeEEEecCCC
Q 013019          392 NPNAAYLIIRGMKTLHLR--VQQQNSTALRMAEIL---EAHPKVLLLFITLL  438 (451)
Q Consensus       392 s~~~a~l~lrgL~tl~~R--l~~~~~nA~~Lae~L---~~~p~V~~V~yPgL  438 (451)
                      +|..+..++..|+.+...  +++..+...+|.+.|   .++|.|..|+.-||
T Consensus       346 npla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl  397 (473)
T 4e3q_A          346 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGF  397 (473)
T ss_dssp             CHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETT
T ss_pred             CcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecce
Confidence            677777766666655432  334444444454444   46788888775554

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.87  E-value=1.1e-08  Score=114.58  Aligned_cols=227  Identities=12%  Similarity=0.089  Sum_probs=139.6

Q ss_pred             CCchhHHHHHHHHHhhhC---CCcEEEeCCHHHHHHHHHHHHc-----cCC------------CeEEEcCCCCcc-hHHH
Q 013019          207 YGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV-----PAG------------GHIVTTTDCYRK-TRIF  265 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~g---ae~~vv~sSG~aAi~~al~all-----~~G------------D~VIv~~~~Y~~-t~~~  265 (451)
                      +.++...+|.++|+++.+   .+.+++++||++|+..++...+     +.|            .+||..+..|.+ |...
T Consensus       421 ~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~ga  500 (831)
T 4a0g_A          421 NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGA  500 (831)
T ss_dssp             EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceee
Confidence            346777899999999987   3578888999999998887542     122            268887777755 4443


Q ss_pred             HHHhh----hc------C-CcEE-------------EEeCC--------------CC------------------HHHHH
Q 013019          266 IETVL----PK------M-GITA-------------TVIDP--------------AD------------------MEGLE  289 (451)
Q Consensus       266 l~~~l----~~------~-Gi~v-------------~~vd~--------------~D------------------~d~Le  289 (451)
                      +...-    ..      . +...             ..++.              .+                  .+.|+
T Consensus       501 ls~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  580 (831)
T 4a0g_A          501 MEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLS  580 (831)
T ss_dssp             HHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHH
T ss_pred             eeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHH
Confidence            32110    00      0 1000             01100              11                  25677


Q ss_pred             Hhhc-------CCCeEEEEEeCC-CCCcccccc----HHHHHHHHHhcCCEEEEecCCCC----C--CccccccCCCcEE
Q 013019          290 AALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----P--LNQKALSLGADLV  351 (451)
Q Consensus       290 ~ai~-------~~~tklV~lesP-sNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~----~--~~~~pl~~GaDiV  351 (451)
                      +.|+       ..++.+|++|.. .+..|.+..    +++|.++|++||++||+||++..    +  +.......-.|++
T Consensus       581 ~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii  660 (831)
T 4a0g_A          581 KHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA  660 (831)
T ss_dssp             HHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE
T ss_pred             HHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEE
Confidence            7775       235889999976 677776654    89999999999999999998642    1  1111122235777


Q ss_pred             EECCcccCCccccceeEEEEeCHHHHHHHHHHh------HhhCCCccHHHHHHHHHhhHHHHHH--HHHHHHH-------
Q 013019          352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH------HVLGGALNPNAAYLIIRGMKTLHLR--VQQQNST-------  416 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~------~~~G~~ls~~~a~l~lrgL~tl~~R--l~~~~~n-------  416 (451)
                      +  ++|.++| |-+..|++++++++++.+....      .......+|..+..++..|+.+...  .++..++       
T Consensus       661 t--lsK~L~g-G~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~  737 (831)
T 4a0g_A          661 C--FAKLLTG-GMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLREL  737 (831)
T ss_dssp             E--ECGGGGT-TSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCC
T ss_pred             E--Eeccccc-CccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5  8899987 3245789999999888765321      1112335778777777666655321  1111111       


Q ss_pred             -HHHHHHHHHcCCCeEEEecC
Q 013019          417 -ALRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       417 -A~~Lae~L~~~p~V~~V~yP  436 (451)
                       .+.+.+.|.++|.|..|+.-
T Consensus       738 l~~~l~~~l~~~~~v~~vrg~  758 (831)
T 4a0g_A          738 WDEELVQQISSHSAVQRVVVI  758 (831)
T ss_dssp             SCHHHHHHHHHSTTEEEEEEE
T ss_pred             HHHHHHHHHhhCCCceeEeec
Confidence             12355667788988887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	451
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	5e-71
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	3e-64
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	7e-60
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	6e-51
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	7e-50
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	6e-48
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	2e-45
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	6e-44
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	6e-40
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	3e-38
d2aeua1	366	c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar	2e-17
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	7e-11
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	2e-07
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	1e-06
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	2e-06
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	6e-06
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	1e-04
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	0.001

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  228 bits (581), Expect = 5e-71
 Identities = 253/284 (89%), Positives = 272/284 (95%)

Query: 147 ASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGR 206
           ASFL+SDGS+AIHAGERLGRGIVTDAITTPVVNTSAYFF KT+ELIDFKEKRRASFEYGR
Sbjct: 4   ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGR 63

Query: 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI 266
           YGNPTTVV+EEK+SALEGAEST++MASGM ASTVMLLALVPAGGHIVTTTDCYRKTRIFI
Sbjct: 64  YGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFI 123

Query: 267 ETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG 326
           ET+LPKMGITATVIDPAD+  LE ALN   V+LFFTESPTNPFLRCVD++LVS LCH+KG
Sbjct: 124 ETILPKMGITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKG 183

Query: 327 AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV 386
           A+VCIDGTFATPLNQKAL+LGADLVLHSATKF+GGHNDVLAG ISG  KLV++IRNLHH+
Sbjct: 184 ALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI 243

Query: 387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV
Sbjct: 244 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 287

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  210 bits (535), Expect = 3e-64
 Identities = 101/277 (36%), Positives = 158/277 (57%), Gaps = 5/277 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
             +HAG++      T A++TP+  TS + F    +         + + Y R GNPTT  +
Sbjct: 11  QIVHAGQQ--PDPSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDAL 68

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E+K++ LE  E+ +  ASG+SA T  LL L   G HIV+ +  Y  T  F+   +PK GI
Sbjct: 69  EKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI 128

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D    E + AA+      + + E+P NP L  VD++ V+ + H++GA++ +D TF
Sbjct: 129 NVRFVDAGKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTF 187

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGGALNP 393
            +P  Q+ L LGAD+V+HS TK+I GH DV+ G I G  + + Q R   L  + GG ++P
Sbjct: 188 MSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSP 247

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
             A+L +RG+KTL +R+++    AL++A  LE HP +
Sbjct: 248 FNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSI 284

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  198 bits (505), Expect = 7e-60
 Identities = 97/275 (35%), Positives = 147/275 (53%), Gaps = 5/275 (1%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
            AIH G          A+  PV  T+ + F             +A   Y R  NPT  ++
Sbjct: 7   RAIHHGYD--PQDHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 64

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           E +M++LEG E+ + +ASGM A T  L  L+  G  ++     Y  T  F+   + + G+
Sbjct: 65  EARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV 124

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D AD++ LEAA+      + + ESP NP +   D+  V+ +  K GA V +D T+
Sbjct: 125 KLRHVDMADLQALEAAM-TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY 183

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGALNP 393
            TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS  LV +I  + L  + G  L+P
Sbjct: 184 CTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSP 243

Query: 394 NAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHP 428
           + A L++RG+KTL+LR+ +  + A  +AE L   P
Sbjct: 244 HDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQP 278

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  175 bits (445), Expect = 6e-51
 Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 35/309 (11%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVV 214
           +L +HAG        T +   P+  T++Y FK      +    +     Y R  NPT  V
Sbjct: 5   TLQLHAGYE--PEPTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDV 62

Query: 215 VEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274
           +E++++ALEG ++ +  ASG +A  + L  L  AG +IV+T + Y  T    +  L ++G
Sbjct: 63  LEKRLAALEGGKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLG 122

Query: 275 ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334
           I        +      AL +     ++ ES  NP L   D++ ++    +KG  + +D T
Sbjct: 123 IEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNT 182

Query: 335 FAT-PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------LVTQIRNLH 384
           F       + L+ GA LV HS TK++GGH  V+AG+I   G          L+T+ +  +
Sbjct: 183 FGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGY 242

Query: 385 HVL-----------------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421
           H L                       G AL P  A++++ GM+TL LR ++     L +A
Sbjct: 243 HGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLA 302

Query: 422 EILEAHPKV 430
             L   P+V
Sbjct: 303 HWLLEQPQV 311

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  172 bits (436), Expect = 7e-50
 Identities = 84/281 (29%), Positives = 143/281 (50%), Gaps = 5/281 (1%)

Query: 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPT 211
           +  +  IHA  +  +     A   P+  TS + F    +  +    + + + Y R GNPT
Sbjct: 4   TPATACIHANPQKDQ---FGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPT 60

Query: 212 TVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP 271
              +E K++ LE  E+ V  +SGM A    +L ++ AG H+++    Y  T    E  L 
Sbjct: 61  VSNLEGKIAFLEKTEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALT 120

Query: 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331
           K GI    I+ A    ++  +  N   ++F              ++  D   ++G +V  
Sbjct: 121 KFGIQVDFINTAIPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIA 180

Query: 332 DGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGG 389
           D TF +P+    +  G D+V+HSATK+I GH DV+AG I G   L+ QIR   +  + G 
Sbjct: 181 DNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGS 240

Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            ++P+ A+LI RG+ TL++R++ ++  A+++AE L++HP V
Sbjct: 241 VISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAV 281

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  166 bits (422), Expect = 6e-48
 Identities = 83/281 (29%), Positives = 147/281 (52%), Gaps = 14/281 (4%)

Query: 151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNP 210
           +S  +L ++   +       DA++TP+  T+ +      E           ++Y R GNP
Sbjct: 1   ASVSTLLVNLDNKFDP---FDAMSTPLYQTATFKQPSAIE--------NGPYDYTRSGNP 49

Query: 211 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL 270
           T   +E  ++ L+ A+      SGM+A +  +  L+  G  IV   D Y  +   +  V+
Sbjct: 50  TRDALESLLAKLDKADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVV 108

Query: 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330
           P+ G+    ++   ++ + AA+      L + ESPTNP  +  D++ +S++ H +GA+V 
Sbjct: 109 PRSGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVL 167

Query: 331 IDGTFATPLNQKALSLGADLVLHSATKFIGGHND-VLAGSISGSGKLVTQIRNLHHVLGG 389
           +D +  +P+  + L LGAD+V+HSATKFI GH+D +         KL  ++  L +  G 
Sbjct: 168 VDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGS 227

Query: 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            L P   +L +RG+KT+ LR+++Q   A ++A  L +HP+V
Sbjct: 228 GLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRV 268

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  160 bits (406), Expect = 2e-45
 Identities = 85/280 (30%), Positives = 138/280 (49%), Gaps = 18/280 (6%)

Query: 154 GSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTV 213
            + AIHAGE +       ++  P+  ++ +     A  I        ++EY R  NP   
Sbjct: 9   ATKAIHAGEHVDV---HGSVIEPISLSTTFKQSSPANPIG-------TYEYSRSQNPNRE 58

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E  ++ALE A+  +  +SG +  T  +L  +P G H V+  D Y  T  +   V    
Sbjct: 59  NLERAVAALENAQYGLAFSSGSAT-TATILQSLPQGSHAVSIGDVYGGTHRYFTKVA-NA 116

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV----KLVSDLCHKKGAIV 329
               T      +  L   +  N   L + E+PTNP L+  D+     L+      +  I+
Sbjct: 117 HGVETSFTNDLLNDLPQLIKENT-KLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175

Query: 330 CIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG 388
            +D TF +P     L+ GAD+V+HSATK+I GH+DV+ G ++ +   L  +++ L + +G
Sbjct: 176 VVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIG 235

Query: 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHP 428
              +P  A+L  RG+KTLHLRV+Q   +A ++AE L A  
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADK 275

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  156 bits (394), Expect = 6e-44
 Identities = 83/276 (30%), Positives = 135/276 (48%), Gaps = 12/276 (4%)

Query: 156 LAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVV 215
           +A+ +G           +  P+  +S Y F    E          + +Y R GNPT  VV
Sbjct: 6   IAVRSGLN--DDEQYGCVVPPIHLSSTYNFTGFNEP--------RAHDYSRRGNPTRDVV 55

Query: 216 EEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275
           +  ++ LEG    V+  +GMSA  ++    +  G  +V   DCY  +    +++  +   
Sbjct: 56  QRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 115

Query: 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335
               +D  D + L AA       L   ESP+NP LR VD+  +  L  + GA+  +D TF
Sbjct: 116 RVLFVDQGDEQALRAA-LAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTF 174

Query: 336 ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPN 394
            +P  Q  L+LGADLVLHS TK++ GH+DV+AG +      +VT++    + +G      
Sbjct: 175 LSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAF 234

Query: 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
            +YL++RG++TL  R++     A  + + L+  P V
Sbjct: 235 DSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLV 270

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  144 bits (363), Expect = 6e-40
 Identities = 69/219 (31%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +E K++ LE AE+    ASGM A    +   + AG H+++    Y  T    E  L K 
Sbjct: 2   ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKF 61

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDG 333
           G+    ID A    +E  L  N   ++F                V     +K  +V +D 
Sbjct: 62  GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDN 121

Query: 334 TFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQI--RNLHHVLGGAL 391
           TFA+P+    L LG D+V+HSATK+I GH DV+AG +     ++ ++  + +  + G  +
Sbjct: 122 TFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAII 181

Query: 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430
           +P+ A+LI RG  TL +RV++    A ++AE L  H  V
Sbjct: 182 SPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAV 220

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  140 bits (354), Expect = 3e-38
 Identities = 69/276 (25%), Positives = 131/276 (47%), Gaps = 4/276 (1%)

Query: 155 SLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELID-FKEKRRASFEYGRYGNPTTV 213
           +  ++AG    +     A+ + +   S+  F          + +      YGR G  T  
Sbjct: 4   TQLVNAGRS--KKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHF 61

Query: 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273
            +++ M  LEG    V+   G +A    +LA +  G H++ T   Y  ++ F   +L K+
Sbjct: 62  SLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL 121

Query: 274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVKLVSDLCHKKGAIVCID 332
           G+T +  DP     +   L  N   +F     +    +  V   + +       AI+ ID
Sbjct: 122 GVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID 181

Query: 333 GTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN 392
            T+A  +  KAL  G D+ + +ATK++ GH+D + G+   + +   Q+R   +++G  ++
Sbjct: 182 NTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVD 241

Query: 393 PNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHP 428
            + AY+  RG++TL +R++Q + ++L++AE L  HP
Sbjct: 242 ADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHP 277

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 81.1 bits (199), Expect = 2e-17
 Identities = 43/245 (17%), Positives = 76/245 (31%), Gaps = 19/245 (7%)

Query: 206 RYGNPTTVVVEEKMSAL-----EGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYR 260
            Y   +    +     L     +  +  V      SA    +LAL P             
Sbjct: 44  TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH 103

Query: 261 KTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320
            +            + A   +   +  +   ++ + + +    +     +   + K V +
Sbjct: 104 PSIERS-----CKIVNAKYFESDKVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVIN 158

Query: 321 LCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 375
               K AIV +D      +        AL LGADLV+ S  K + G    L   ++G  +
Sbjct: 159 TAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGL---LAGKKE 215

Query: 376 LVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRMAEILEAHPKVLLLF 434
           LV +I       G    P     I R +K  +L R+++    A              L  
Sbjct: 216 LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA 275

Query: 435 ITLLL 439
           I   +
Sbjct: 276 IDDNI 280

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 61.5 bits (148), Expect = 7e-11
 Identities = 46/309 (14%), Positives = 97/309 (31%), Gaps = 21/309 (6%)

Query: 138 EALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEK 197
           +    LK  +   +     ++  GER  R   +            +   ++  L+D + K
Sbjct: 47  KIKLFLKFLSMMDTDKDPKSVRIGEREAR-TYSKIHEELSSGF-CHGIGRSGNLVDPQPK 104

Query: 198 RRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVML-LALVPAGGHIVTTT 256
              +       N   +    K   L        +++GMS S  +           ++   
Sbjct: 105 ASGASIMYALTNKI-LESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPY 163

Query: 257 DCYRKTRIFIETVLPKMGITATVIDPA----DMEGLEAALNNN----NVSLFFTESPTNP 308
             ++     +  V   M +  TV+D       +E +E A+       N     +     P
Sbjct: 164 ASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFP 223

Query: 309 FLRCVDVKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGH 362
                D+  ++ +C        I+G +A          +KA     D V+ S+ K +   
Sbjct: 224 PRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP 283

Query: 363 NDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNSTALRM 420
                   S   + + +I   +     A       + +  M + +    V+ Q ++   +
Sbjct: 284 IGG-GLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLL 342

Query: 421 AEILEAHPK 429
            E+L    K
Sbjct: 343 DELLNDLSK 351

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 22/187 (11%), Positives = 53/187 (28%), Gaps = 24/187 (12%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTR 263
           Y   G+     +E+ +  L G +  V    G  A  ++    +  G ++         TR
Sbjct: 71  YA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TR 127

Query: 264 IFIET-------VLPKMGITATVIDPA----DMEGLEAALNNNN-------VSLFFTESP 305
              E        ++      A++  P     D+  L   +                    
Sbjct: 128 FHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLA 187

Query: 306 TNPFLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLHSATKFIGGH 362
               +   +++ V ++    G  +  D T         ++  +   ++ +      +  +
Sbjct: 188 GGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSY 247

Query: 363 NDVLAGS 369
            D    S
Sbjct: 248 ADGCTMS 254

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 25/201 (12%), Positives = 57/201 (28%), Gaps = 32/201 (15%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG--------GHIVTT 255
           +   G+ +   + E +  + G + T+    G  A  + +  L+             +V  
Sbjct: 70  FS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAF 127

Query: 256 TDCYRKTRIFIETV---------------LPKMGITATVIDPADMEGLEAALNNNNVSLF 300
           ++ +  T      +                          D   +E     +  NNV   
Sbjct: 128 SNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI 187

Query: 301 FTESPTN----PFLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLH 353
                +N      +   ++K +  +  K    V +D           ++  +   D  + 
Sbjct: 188 VATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIE 247

Query: 354 SATKFIGGHNDVLAGSISGSG 374
             T+    + D+LA S     
Sbjct: 248 QITRETYKYADMLAMSAKKDA 268

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 48/332 (14%), Positives = 96/332 (28%), Gaps = 42/332 (12%)

Query: 131 GLKNVQLEALADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKT-- 188
           G     LE    L   A   S++       GER GR      + + +V    Y F     
Sbjct: 23  GWDESTLELF--LHELAVMDSNNFLGNCGVGEREGR------VASALVARRHYRFIHGIG 74

Query: 189 --AELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL- 245
              ++   + K   S    +  N   + V +       A   V+  +   + T+  L L 
Sbjct: 75  RSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR 134

Query: 246 --VPAGGHIVTTTDCYR----------KTRIFIETVLPKMGITATVIDPADMEGLEAALN 293
              P   +I+      +             + IE VL          D   +E     L 
Sbjct: 135 HKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD---ELRTDLKAVEAKIQELG 191

Query: 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT------FATPLNQKALSLG 347
             ++    + +          ++ ++ +C        ++            L Q+   +G
Sbjct: 192 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 251

Query: 348 -ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL 406
             D  + S  K         A     +   +  I  ++     A       + +  +   
Sbjct: 252 RIDAFVQSLDKNFMVPVGG-AIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCS 310

Query: 407 HLRVQQQNSTAL------RMAEILEAHPKVLL 432
             R   +    +      ++ ++ EAH + LL
Sbjct: 311 GYRKLLKERKEMFVYLSTQLKKLAEAHNERLL 342

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 28/244 (11%), Positives = 73/244 (29%), Gaps = 18/244 (7%)

Query: 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE 267
             P    +  ++    G +   +      A   ++ +L      +V   +C+  + +  E
Sbjct: 45  TPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE 104

Query: 268 TVLPKMGITATVIDPADMEGLEA-------ALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320
                + +      P      E              V L     P   +    DVK ++ 
Sbjct: 105 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAK 164

Query: 321 LCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ 379
           +C +    + ++G +A   +      +GAD ++ S  K +     +  G +    +    
Sbjct: 165 VCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPI--GVMGMKEEWAEI 222

Query: 380 IRN--------LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVL 431
           +             +LG          ++     +  R+++ +    +         K+ 
Sbjct: 223 VLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLG 282

Query: 432 LLFI 435
           +  +
Sbjct: 283 IKQL 286

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 198 RRASFEYGRYGN-PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT 256
            +A      YG  PT   +E   +   G E+ + + SG   + V ++A    G  ++   
Sbjct: 21  AQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEA 80

Query: 257 DCY 259
           D +
Sbjct: 81  DSH 83

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 20/199 (10%), Positives = 47/199 (23%), Gaps = 30/199 (15%)

Query: 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAG-------------- 249
           Y   G+     +++K   L   +  +    G  A  ++   L+                 
Sbjct: 71  YA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN 128

Query: 250 -------GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFT 302
                   H+                            D   ++   A    +N+    +
Sbjct: 129 FHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVS 188

Query: 303 ESPTNP----FLRCVDVKLVSDLCHKKGAIVCIDGT---FATPLNQKALSLGADLVLHSA 355
               N      +   ++K V ++  + G  V +D           +       +  +   
Sbjct: 189 TVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEV 248

Query: 356 TKFIGGHNDVLAGSISGSG 374
              +  + D L  S     
Sbjct: 249 IFDMYKYADALTMSAKKDP 267

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	451
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.91
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.91
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.89
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.86
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.86
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.86
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.84
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.84
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.84
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.83
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.83
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.82
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.82
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.82
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.8
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.8
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.8
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.79
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.79
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.79
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.79
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.78
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.77
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.77
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.77
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.76
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.76
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.76
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.76
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.75
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.75
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.75
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.75
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.74
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.74
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.72
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.71
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.67
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.67
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.66
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.66
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.64
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.63
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.62
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.62
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.61
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.6
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.58
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.58
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.57
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.56
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.54
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.52
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.5
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.49
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.43
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.42
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.41
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.38
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.36
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.34
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.33
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.31
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.26
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.25
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.13
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.02
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.96
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.94
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.91
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.91
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	98.71
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	98.58
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.5
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	98.45
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.16

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.8e-65  Score=525.40  Aligned_cols=302  Identities=83%  Similarity=1.219  Sum_probs=287.4

Q ss_pred             hhcccCCCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhC
Q 013019          145 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG  224 (451)
Q Consensus       145 ~~~~~~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~g  224 (451)
                      +|.+|+++..|++||+|++.+++..+++++||||+|+||.|++.+++.+.+.++..+|.|+|.+|||++.||++|++++|
T Consensus         2 ~~~~~~~~~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~LE~~la~LEg   81 (398)
T d1qgna_           2 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG   81 (398)
T ss_dssp             CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred             CccccCCCCccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCCcCCceecCCCChHHHHHHHHHHHHhC
Confidence            57899999999999999876655568999999999999999999999998888888999999999999999999999999


Q ss_pred             CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHh-hcCCCeEEEEEe
Q 013019          225 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA-LNNNNVSLFFTE  303 (451)
Q Consensus       225 ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~a-i~~~~tklV~le  303 (451)
                      ++.+++++|||+||.+++++++++||+|++.+..|++++.++...++++|+++++++..+.++.++. +++ +|++||+|
T Consensus        82 g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~-~t~~v~~E  160 (398)
T d1qgna_          82 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFTE  160 (398)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEEE
T ss_pred             CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhhhccc-cceEEEcc
Confidence            9999999999999999999999999999999999999999999999999999999998777665554 455 59999999


Q ss_pred             CCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHH
Q 013019          304 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL  383 (451)
Q Consensus       304 sPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~  383 (451)
                      +|+||++++.||++|+++||++|+++||||||++|++++|+++|+|||++|+|||++||+|+++|+++++++++++++..
T Consensus       161 spsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~  240 (398)
T d1qgna_         161 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL  240 (398)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred             CccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          384 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       384 ~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +..+|..++|+++|+++|||+||..||+++++||.+|++||++||.|++|+||||++||++++.
T Consensus       241 ~~~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~  304 (398)
T d1qgna_         241 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIA  304 (398)
T ss_dssp             HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHH
T ss_pred             cccCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhh
Confidence            9999999999999999999999999999999999999999999999999999999999998764

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=7.9e-65  Score=520.21  Aligned_cols=293  Identities=35%  Similarity=0.606  Sum_probs=279.3

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +|+|++||+|+.++  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|++||++..||++|++++|++.++++
T Consensus         7 ~f~T~~ih~G~~~~--~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~   84 (397)
T d1y4ia1           7 GFNTQIVHAGQQPD--PSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT   84 (397)
T ss_dssp             CHHHHHHHTTCCCC--TTTCCSSCCCCCCSCCCCSSHHHHHHHHHSCSSSSCCCTTSCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEeCCCCCC--CCCCCccCCccCCCCeeeCCHHHHHHhhcCCcCCceeeCCCCHHHHHHHHHHHHHhCCccceee
Confidence            48999999998753  4578999999999999999999999888888889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+||.+++++++++||+||+++..|++++.++...++++|++++++|..|+++++++++++ ||+||+|+|+||+++
T Consensus        85 sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~~-Tklv~~Esp~NP~l~  163 (397)
T d1y4ia1          85 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAGKPEEIRAAMRPE-TKVVYIETPANPTLS  163 (397)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTT-EEEEEEESSCTTTCC
T ss_pred             hHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCCCCHHHHHHhcCCC-CcEEEecCCccccee
Confidence            9999999999999999999999999999999999999999999999999999999999999875 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHH--HHhHhhCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVLGG  389 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr--~~~~~~G~  389 (451)
                      +.||++|+++||++|++++|||||++|+.++|+++|+|||++|+|||++||+|+++|+++++++.+.+++  ..+..+|.
T Consensus       164 v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~  243 (397)
T d1y4ia1         164 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG  243 (397)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred             ecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999887654  45667899


Q ss_pred             CccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       390 ~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      .++|+++|+++|||+||..||++|++||++|++||++||.|++|+||+|++||++++.
T Consensus       244 ~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~  301 (397)
T d1y4ia1         244 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELG  301 (397)
T ss_dssp             CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHH
T ss_pred             cCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCcccccc
Confidence            9999999999999999999999999999999999999999999999999999987653

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=5.4e-65  Score=520.97  Aligned_cols=296  Identities=35%  Similarity=0.535  Sum_probs=252.3

Q ss_pred             CCCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEE
Q 013019          150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV  229 (451)
Q Consensus       150 ~~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~v  229 (451)
                      |..|+|++||+|+.++  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|++|||+..||++|++++|++.++
T Consensus         1 ~~g~~T~~vH~G~~~~--~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~   78 (392)
T d1gc0a_           1 LPGFATRAIHHGYDPQ--DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGL   78 (392)
T ss_dssp             CCCHHHHHHHTTCCGG--GGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CcCcchhceeCCCCCC--CCCCCeeCCccCCCCEeeCCHHHHHHhhcCCcCCceecCCCChHHHHHHHHHHHHhCCccee
Confidence            4579999999997643  45789999999999999999999888888888889999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCc
Q 013019          230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF  309 (451)
Q Consensus       230 v~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPt  309 (451)
                      +++|||+|+.+++.+++++||+|++++..|++++.+++..++++|++++++|..|+++++++++++ |++||+|+|+||+
T Consensus        79 ~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~~-t~lv~~Esp~NP~  157 (392)
T d1gc0a_          79 ALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPA-TRVIYFESPANPN  157 (392)
T ss_dssp             EESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTT-EEEEEEESSCTTT
T ss_pred             ehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCccCHHHHHHhCCCC-CeEEEecccccce
Confidence            999999999999999999999999999999999999999999999999999999999999999985 9999999999999


Q ss_pred             cccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHH--HHhHhh
Q 013019          310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR--NLHHVL  387 (451)
Q Consensus       310 G~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr--~~~~~~  387 (451)
                      +++.||++|+++||++|++++|||||++|+.++|+++|+|||++|+|||++||+|+++|+++++++++.+++  ..+..+
T Consensus       158 l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~  237 (392)
T d1gc0a_         158 MHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMT  237 (392)
T ss_dssp             CCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHT
T ss_pred             eeecchHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999887765  556778


Q ss_pred             CCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCcccc
Q 013019          388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLVG  448 (451)
Q Consensus       388 G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv~  448 (451)
                      |..++|+++|+++|||+||..||+++++||++|++||++||.|++|+||+|++||++++..
T Consensus       238 G~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~  298 (392)
T d1gc0a_         238 GAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLAR  298 (392)
T ss_dssp             CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC------------
T ss_pred             CCcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCccccccc
Confidence            9999999999999999999999999999999999999999999999999999999998753

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.5e-63  Score=508.19  Aligned_cols=294  Identities=29%  Similarity=0.416  Sum_probs=270.4

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      |+++|++||+|..++  ..+++++||||+|+||.|++.+++.+.+.++..+|.|+|.+|||++.||++|++++|++.+++
T Consensus         1 mk~~T~~vh~g~~~~--~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~LE~~la~LE~~~~a~~   78 (421)
T d2ctza1           1 MRFETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALA   78 (421)
T ss_dssp             CCHHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CChhHhheeCCCCCC--CCCCCccCCccCCCCeecCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            579999999998754  457899999999999999999999998888888999999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCC-HHHHHHhhcCCCeEEEEEeCCCCCc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD-MEGLEAALNNNNVSLFFTESPTNPF  309 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D-~d~Le~ai~~~~tklV~lesPsNPt  309 (451)
                      |+|||+||.+++++++++|||||+.+..|++++.+++..++++|++++++|..+ .+.+++.+++ +|++||+|+|+||+
T Consensus        79 ~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~~~~~~-~t~li~~EtpsNP~  157 (421)
T d2ctza1          79 TASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPA  157 (421)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred             ecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccccCcchhccccCC-CceEEEEcCCCcce
Confidence            999999999999999999999999999999999999999999999999998765 4566666776 49999999999999


Q ss_pred             cccccHHHHHHHHHhcCCEEEEecCCC-CCCccccccCCCcEEEECCcccCCccccceeEEEEeCHH-------------
Q 013019          310 LRCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK-------------  375 (451)
Q Consensus       310 G~v~DL~~IaelA~~~g~~lVVD~tfa-~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e-------------  375 (451)
                      +++.||++|+++||++|+++||||||+ +|+.++|+++|+|||++|+|||++||+|+++|+++.+++             
T Consensus       158 l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~  237 (421)
T d2ctza1         158 LNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTE  237 (421)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHS
T ss_pred             eEecchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccC
Confidence            999999999999999999999999998 799999999999999999999999999999999997542             


Q ss_pred             ------------------HHHHHH-HHhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Q 013019          376 ------------------LVTQIR-NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       376 ------------------li~~lr-~~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yP  436 (451)
                                        ++.+++ ...+.+|..++|+++|+++|||+||..||++|++||..+++||++||.|++|+||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yP  317 (421)
T d2ctza1         238 PQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYP  317 (421)
T ss_dssp             CBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECT
T ss_pred             CchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCeeEEecC
Confidence                              222222 2344689999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccc
Q 013019          437 LLLCFYNGTLV  447 (451)
Q Consensus       437 gL~~~p~~~lv  447 (451)
                      ||++||++++.
T Consensus       318 gL~s~p~~~~a  328 (421)
T d2ctza1         318 GLPHHPHHDRA  328 (421)
T ss_dssp             TSTTCTTHHHH
T ss_pred             CcCCCccHHHH
Confidence            99999998763

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.3e-62  Score=498.47  Aligned_cols=285  Identities=30%  Similarity=0.496  Sum_probs=269.9

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|...+  ..+++++||||+|+||.|++.+        +..+|.|+|++|||...||++|++++|++.+++|
T Consensus         2 k~~T~~vh~G~~~~--~~~gav~pPI~~sst~~~~~~~--------~~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~~   71 (384)
T d1cs1a_           2 KQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFN--------EPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLT   71 (384)
T ss_dssp             CHHHHHHHTTTTCC--TTTCBSSCCBCCCSBBCCSBTT--------BCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             ChhhheeeCCCCCC--CCCCCccCCccCCCCeecCCCC--------cccCCcccCCCCHHHHHHHHHHHHHhCCCceEEe
Confidence            68899999998754  4689999999999999999764        2357999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+||..++.+++++||+|++.+..|++++.++...++++|+++.++|..|.++++++++++ |++||+|+|+||+++
T Consensus        72 sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~d~~~~~~~~~~~-t~~v~~EspsNP~l~  150 (384)
T d1cs1a_          72 NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK-PKLVLVESPSNPLLR  150 (384)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTC-CSEEEEECSCTTTCC
T ss_pred             cChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccCCCHHHHHhhcccc-ccEEEEeccccccce
Confidence            9999999999999999999999999999999999999999999999999999999999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~  390 (451)
                      +.||++|+++||++|+++||||||++|+.++|+++|+|||++|+|||++||+|+++|+++++ +++.++++..+..+|..
T Consensus       151 v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~  230 (384)
T d1cs1a_         151 VVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT  230 (384)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCB
T ss_pred             eccHHHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999998885 56678888888999999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++|+++|+++|||+||..||+++++||++|++||++||.|++|+||||++||++++.
T Consensus       231 ~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~  287 (384)
T d1cs1a_         231 GGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIA  287 (384)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHH
T ss_pred             cccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHH
Confidence            999999999999999999999999999999999999999999999999999998753

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=9.8e-62  Score=497.85  Aligned_cols=293  Identities=31%  Similarity=0.528  Sum_probs=276.2

Q ss_pred             CCccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          151 SSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       151 ~~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      ++++|++||+|...+   .+++++||||+|+||.|++.+++.+.+.++..+|.|+|++|||++.||++|++++|++.+++
T Consensus         3 ~~~~T~~vh~g~~~d---~~gav~~PI~~sst~~~~~~~~~~~~~~~~~~~~~YsR~~nPT~~~le~~la~LEg~~~a~~   79 (394)
T d1e5ea_           3 MTPATACIHANPQKD---QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVA   79 (394)
T ss_dssp             CCHHHHHHHSSCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHheeCCCCCC---CCCCeeCCccCCCCeeeCCHHHHHHhhcCCcCCceecCCCCHHHHHHHHHHHHHhCCcceee
Confidence            468999999997643   47899999999999999999999998888888999999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++|||+|+.+++++++++||+|++.+..|++++.++...+.++|++++++|..|+++++++++++ +++||+|+|+||++
T Consensus        80 ~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~d~~~~~~~i~~~-t~lv~~Etp~NP~l  158 (394)
T d1e5ea_          80 TSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPN-TKIVYFETPANPTL  158 (394)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTT-EEEEEEESSCTTTC
T ss_pred             eccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCCCHHHHHHhhccc-ccEEEEeccCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999885 99999999999999


Q ss_pred             ccccHHHHHHHHHh-cCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHH--HhHhh
Q 013019          311 RCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN--LHHVL  387 (451)
Q Consensus       311 ~v~DL~~IaelA~~-~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~--~~~~~  387 (451)
                      .+.|++++++++++ +|+++||||||++|++++|+++|+|||++|+|||++||+|+++|+++++++.+..++.  ++..+
T Consensus       159 ~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~  238 (394)
T d1e5ea_         159 KIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDIT  238 (394)
T ss_dssp             CCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCC
T ss_pred             eeehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhh
Confidence            99999999887764 7899999999999999999999999999999999999999999999999988876654  34568


Q ss_pred             CCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          388 GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       388 G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      |..++|+++|+++|||+||..||+++++||.+|++||++||+|++|+||||++||++++.
T Consensus       239 G~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~  298 (394)
T d1e5ea_         239 GSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIA  298 (394)
T ss_dssp             CCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHH
T ss_pred             CCCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhh
Confidence            999999999999999999999999999999999999999999999999999999997653

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-62  Score=498.97  Aligned_cols=293  Identities=26%  Similarity=0.422  Sum_probs=277.4

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccC-CccccCCCchhHHHHHHHHHhhhCCCcEEE
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRA-SFEYGRYGNPTTVVVEEKMSALEGAESTVI  230 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~-~~~Y~R~~npt~~~Lee~LA~l~gae~~vv  230 (451)
                      |++|+++|+|+..+  ..+++++||||+|+||.|++.++..+.+.++.. .|.|+|++|||++.||++|++++|++.+++
T Consensus         1 k~~T~~vh~g~~~~--~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~   78 (391)
T d1cl1a_           1 KLDTQLVNAGRSKK--YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL   78 (391)
T ss_dssp             CHHHHHHHTTCCHH--HHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcccceecCCCCCC--CCCCCccCCeeCCCceeeCCHHHHHHHhcCCccCceEeECCCChhHHHHHHHHHHHhCCccEEE
Confidence            57899999997643  357899999999999999999988776665544 589999999999999999999999999999


Q ss_pred             eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcc
Q 013019          231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL  310 (451)
Q Consensus       231 ~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG  310 (451)
                      ++|||+||.+++++++++||+||+.+..|++|+.+++..+.++|+++.++|..|.++++++++++ +++||+|+|+||++
T Consensus        79 ~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~d~~~~~~~i~~~-t~~i~~EtpsNP~l  157 (391)
T d1cl1a_          79 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN-TKIVFLESPGSITM  157 (391)
T ss_dssp             ESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGTCCTT-EEEEEEESSCTTTC
T ss_pred             eccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCccccccccccccc-cceeeecccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999885 99999999999999


Q ss_pred             ccccHHHHHHHHHh--cCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhC
Q 013019          311 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG  388 (451)
Q Consensus       311 ~v~DL~~IaelA~~--~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G  388 (451)
                      .+.||++|+++|++  +|+++||||||++|++++|+++|+|||++|+|||++||+|+++|++++++++.++++..+..+|
T Consensus       158 ~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G  237 (391)
T d1cl1a_         158 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG  237 (391)
T ss_dssp             CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccccccccchhhhhccc
Confidence            99999999999976  4999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       389 ~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ..++|+++|+++|||+||..||+++++||.+|++||++||.|++|+||+|++||++++.
T Consensus       238 ~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~  296 (391)
T d1cl1a_         238 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFW  296 (391)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHH
T ss_pred             ccCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999998764

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.5e-61  Score=491.40  Aligned_cols=283  Identities=31%  Similarity=0.546  Sum_probs=267.1

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +++|+++|+|+..|   ++++++||||+|+||.|++..        +..+|.|+|++|||.+.||++|++++|++.+++|
T Consensus         2 ~~~t~~~h~~~~~d---p~ga~~~PI~~sstf~~~~~~--------~~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~f   70 (380)
T d1ibja_           2 SVSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCF   70 (380)
T ss_dssp             CHHHHHTCCCCSSC---TTCCSSCCCCCCSBCCCSSSS--------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CHhHhhhcCCCCCC---CCCCccCCccCCcceecCCCC--------ccCCceeeCCCChHHHHHHHHHHHHcCCceEEeh
Confidence            47899999998764   378999999999999999753        3467999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+||. ++++++++||+|++.++.|++++.+++..++++|+++.+++..|+++++++++++ |++||+|+|+||+++
T Consensus        71 sSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~~~~~~ai~~~-t~li~~EtpsNP~l~  148 (380)
T d1ibja_          71 TSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ-TKLVWLESPTNPRQQ  148 (380)
T ss_dssp             SSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCSS-EEEEEECSSCTTTCC
T ss_pred             hhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCcchHHHHHHHhccC-ccEEEeccccccccc
Confidence            99999996 5678999999999999999999999999999999999999999999999999885 999999999999999


Q ss_pred             cccHHHHHHHHHhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCC
Q 013019          312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA  390 (451)
Q Consensus       312 v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~  390 (451)
                      +.||++|+++||++|+++||||||++|+.++|+++|+|+|++|+|||++||+|+++|+++.+ +++.++++..+..+|..
T Consensus       149 v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~  228 (380)
T d1ibja_         149 ISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSG  228 (380)
T ss_dssp             CCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCB
T ss_pred             cccHHHHHHHHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCc
Confidence            99999999999999999999999999999999999999999999999999999999998876 56778899999999999


Q ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       391 ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      ++|+++|+++|||+|+..||+++++||+++++||++||.|++|+||||++||++.+.
T Consensus       229 l~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a  285 (380)
T d1ibja_         229 LAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLH  285 (380)
T ss_dssp             CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHH
T ss_pred             CCHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCcccccc
Confidence            999999999999999999999999999999999999999999999999999988664

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-59  Score=477.55  Aligned_cols=283  Identities=32%  Similarity=0.519  Sum_probs=262.4

Q ss_pred             CccccccccCCcCCCCCCCCCccCCccccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEe
Q 013019          152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM  231 (451)
Q Consensus       152 ~~~t~~v~~g~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~  231 (451)
                      +|+|++||+|+..+   .+++++||||+|+||.|++.+       .....|.|+|.+|||++.||++|++|+|++.+++|
T Consensus         7 ~f~T~~vHag~~~d---~~gav~pPI~~ssTf~~~~~~-------~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~a~~~   76 (393)
T d1n8pa_           7 KFATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLAF   76 (393)
T ss_dssp             CHHHHHHHTTCCCC---SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CcchheEECCCCCC---CCCCccCCcCCCCceecCCcc-------cccCCeeeeCCCChHHHHHHHHHHHHhCCceEEEe
Confidence            58999999998643   478999999999999999764       23457999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccc
Q 013019          232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR  311 (451)
Q Consensus       232 sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~  311 (451)
                      +|||+|+.++ +.++++||+|++.+..|++++.++...++++|+++.+++. +.++++++++++ |++||+|+|+||+++
T Consensus        77 sSGmaAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~-~~~~~~~~i~~~-t~lv~~EspsNP~l~  153 (393)
T d1n8pa_          77 SSGSATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKEN-TKLVWIETPTNPTLK  153 (393)
T ss_dssp             SCHHHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSS-EEEEEECSSCTTTCC
T ss_pred             cCchhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEeec-chHHHHHHhhhh-cceeEecCcchhhhh
Confidence            9999999755 5788999999999999999999999999999999999984 568999999885 999999999999999


Q ss_pred             cccHHHHHHHHH----hcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHh
Q 013019          312 CVDVKLVSDLCH----KKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV  386 (451)
Q Consensus       312 v~DL~~IaelA~----~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~  386 (451)
                      +.||++|+++||    ++|+++||||||++|++++|+++|+|||++|+|||++||+|+++|+++.+ +++.++++..+..
T Consensus       154 v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~  233 (393)
T d1n8pa_         154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA  233 (393)
T ss_dssp             CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhh
Confidence            999999999999    67899999999999999999999999999999999999999999998865 5678899999999


Q ss_pred             hCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEecCCCCCCCCCccc
Q 013019          387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAH-PKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       387 ~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~-p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +|..++|+++|+++|||+||.+||+++++||++|++||++| |.|++|+||+|++||++++.
T Consensus       234 ~G~~~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a  295 (393)
T d1n8pa_         234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV  295 (393)
T ss_dssp             HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHH
T ss_pred             cCCCCChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhh
Confidence            99999999999999999999999999999999999999887 88999999999999998764

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=2.2e-49  Score=397.72  Aligned_cols=233  Identities=32%  Similarity=0.540  Sum_probs=221.1

Q ss_pred             HHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHHHHhhc
Q 013019          214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN  293 (451)
Q Consensus       214 ~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~Le~ai~  293 (451)
                      +||++||+++|++.+++|+|||+||..++++++++||||+++++.|++|+.+++..++++|++++++|..|++.++++++
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~d~~~~~~~i~   81 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK   81 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEecccchhhHhhhcc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEEEeCCCCCccccccHHHHHHHH-HhcCCEEEEecCCCCCCccccccCCCcEEEECCcccCCccccceeEEEEe
Q 013019          294 NNNVSLFFTESPTNPFLRCVDVKLVSDLC-HKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG  372 (451)
Q Consensus       294 ~~~tklV~lesPsNPtG~v~DL~~IaelA-~~~g~~lVVD~tfa~~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~  372 (451)
                      ++ |++||+|+|+||+..+.|++++.+++ +++|+++||||||++|+.++|+++|+|||++|+|||++||+|+++|++++
T Consensus        82 ~~-t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~  160 (331)
T d1pffa_          82 PN-TRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS  160 (331)
T ss_dssp             TT-EEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred             cc-cceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCccccccccc
Confidence            85 99999999999999999999999985 67899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHH--HhHhhCCCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCCCCccc
Q 013019          373 SGKLVTQIRN--LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLLLCFYNGTLV  447 (451)
Q Consensus       373 ~~eli~~lr~--~~~~~G~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL~~~p~~~lv  447 (451)
                      +++.+.+.+.  .+..+|..++|+++|+++||++|+..||+++++||+.+++||++||.|++|+||+|++||++++.
T Consensus       161 ~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~  237 (331)
T d1pffa_         161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIA  237 (331)
T ss_dssp             CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHH
T ss_pred             cccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHH
Confidence            9877766554  34567999999999999999999999999999999999999999999999999999999998754

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.91  E-value=1.3e-24  Score=218.55  Aligned_cols=204  Identities=21%  Similarity=0.194  Sum_probs=163.2

Q ss_pred             HHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHccCCCeEEEc-CCCCcchHHHHHHhhhcCCcEEEEeCCCCHHH
Q 013019          212 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTT-TDCYRKTRIFIETVLPKMGITATVIDPADMEG  287 (451)
Q Consensus       212 ~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all~~GD~VIv~-~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~  287 (451)
                      .+.+++..++.++.   ++++++++|++|+..++.++.+.||.|+++ .+.|......+    +..|++  +++..|+++
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~----~l~g~~--~v~~~d~e~  125 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSC----KIVNAK--YFESDKVGE  125 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHH----HHTTCE--EEEESCHHH
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHH----HhcCCe--EECCCCHHH
Confidence            35676766666653   567888999999999999876544444444 47888766433    445665  356679999


Q ss_pred             HHHhhcCCCeEEEEEeCCCCC-ccccccHHHHHHHHHhcCCEEEEecCCCCCCc-----cccccCCCcEEEECCcccCCc
Q 013019          288 LEAALNNNNVSLFFTESPTNP-FLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGG  361 (451)
Q Consensus       288 Le~ai~~~~tklV~lesPsNP-tG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-----~~pl~~GaDiVv~S~SK~l~G  361 (451)
                      |+++|+++ |++|++++|+|| ++...|+++|+++|++||+++++|++|+.++.     ..++..|+|++++|+||+++|
T Consensus       126 l~~~i~~~-tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~sK~~~g  204 (366)
T d2aeua1         126 ILNKIDKD-TLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG  204 (366)
T ss_dssp             HHTTCCTT-EEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred             HHHhcCCC-ceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEecccccccc
Confidence            99999985 999999999987 45678999999999999999999999875421     234567999999999999998


Q ss_pred             cccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHH
Q 013019          362 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH-LRVQQQNSTALRMAEILE  425 (451)
Q Consensus       362 ~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~-~Rl~~~~~nA~~Lae~L~  425 (451)
                      ++   +|+++++++++++++..+..+|.+++++.+++++++|+++. .|++++.++++.+++++.
T Consensus       205 ~~---~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~  266 (366)
T d2aeua1         205 PR---GGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKI  266 (366)
T ss_dssp             CS---CEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHH
T ss_pred             cc---eeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            85   89999999999999999888899999999999999999874 478888888877554443

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=1.4e-23  Score=207.41  Aligned_cols=213  Identities=14%  Similarity=0.252  Sum_probs=164.1

Q ss_pred             hhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-------
Q 013019          210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-------  282 (451)
                      |..+.+|+.+|+++|.++++++++|++|+.+++.+++++||+||+++++|.+.+..    +...|.++.+++.       
T Consensus        47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~----~~~~g~~v~~v~~~~~~~~~  122 (364)
T d2e7ja1          47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALVPKTDYPDYA  122 (364)
T ss_dssp             CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEECCCCTTTCC
T ss_pred             HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchH----HHhccceEEEeeeccccccc
Confidence            45788999999999999999999999999999999999999999999999886643    4466888888753       


Q ss_pred             CCHHHHHHhhcC----CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcc
Q 013019          283 ADMEGLEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK  357 (451)
Q Consensus       283 ~D~d~Le~ai~~----~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK  357 (451)
                      .|++++++++++    .++++|++++|+||+|.+.|+++|+++|++||+++++|++++.+.. .+..++|+|+++.|+||
T Consensus       123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K  202 (364)
T d2e7ja1         123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHK  202 (364)
T ss_dssp             CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHH
T ss_pred             cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeeecccc
Confidence            368899988853    2367999999999999999999999999999999999999976532 34456799999999999


Q ss_pred             cCCccccceeEEEEeCHHHHHHHHHHh--------HhhCCCccHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHc
Q 013019          358 FIGGHNDVLAGSISGSGKLVTQIRNLH--------HVLGGALNPNAAYLIIRGMKTLHL---RVQQQNSTALRMAEILEA  426 (451)
Q Consensus       358 ~l~G~gdv~gG~Iv~~~eli~~lr~~~--------~~~G~~ls~~~a~l~lrgL~tl~~---Rl~~~~~nA~~Lae~L~~  426 (451)
                      ++++++  .+|++++++++++.+....        ...+........+.+..+++.+..   ++.+..++++.+.+.|++
T Consensus       203 ~~~~~g--~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  280 (364)
T d2e7ja1         203 SMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEK  280 (364)
T ss_dssp             HSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCC--CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999886  5799999988776543221        112222222333444445544433   244455677788888877


Q ss_pred             CC
Q 013019          427 HP  428 (451)
Q Consensus       427 ~p  428 (451)
                      .+
T Consensus       281 ~g  282 (364)
T d2e7ja1         281 LG  282 (364)
T ss_dssp             TT
T ss_pred             cC
Confidence            64

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.89  E-value=2.7e-21  Score=195.17  Aligned_cols=213  Identities=15%  Similarity=0.203  Sum_probs=155.3

Q ss_pred             HHHHHHHHhh----hCC---CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          213 VVVEEKMSAL----EGA---ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       213 ~~Lee~LA~l----~ga---e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      .+|++.++++    .|.   ++.+++++| ++++..++.+++++||+|++++|+|......+    ...|..+..+..  
T Consensus        70 ~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~----~~~~~~~v~~~~~~  145 (388)
T d1j32a_          70 PRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMV----KLAEGTPVILPTTV  145 (388)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHH----HHTTCEEEEECCCG
T ss_pred             HHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHH----HHhcCeEEEEeccc
Confidence            4455555544    443   234555555 59999999999999999999999999866444    334444444432  


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----ccc-----
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----ALS-----  345 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----pl~-----  345 (451)
                           .|+++|+++++++ ++++++++|+||||.+++   +++|+++|+++|++||+|++|.......    ++.     
T Consensus       146 ~~~~~~d~~~l~~~~~~~-~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~  224 (388)
T d1j32a_         146 ETQFKVSPEQIRQAITPK-TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE  224 (388)
T ss_dssp             GGTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH
T ss_pred             ccccCCCHHHHHHhCCCC-CeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcc
Confidence                 4799999999874 999999999999999986   6788888999999999999986432211    111     


Q ss_pred             -CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHh----hHHHHHHHHHHHHHHHHH
Q 013019          346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----MKTLHLRVQQQNSTALRM  420 (451)
Q Consensus       346 -~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrg----L~tl~~Rl~~~~~nA~~L  420 (451)
                       ....+++.|+||.++.+| ++.||+++++++++.+...........+....+.+...    .+.+....+...++...+
T Consensus       225 ~~~~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (388)
T d1j32a_         225 AYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYM  303 (388)
T ss_dssp             HHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred             cccceeEecCChhhhhcch-hHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence             123589999999998776 67899999999999888776655555555554433332    244555667777888899


Q ss_pred             HHHHHcCCCeE
Q 013019          421 AEILEAHPKVL  431 (451)
Q Consensus       421 ae~L~~~p~V~  431 (451)
                      .+.|++++++.
T Consensus       304 ~~~l~~~~g~~  314 (388)
T d1j32a_         304 LDALNAMPGLE  314 (388)
T ss_dssp             HHHHHTCTTCB
T ss_pred             HHHHHhCCCCE
Confidence            99999887753

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=3.6e-20  Score=185.98  Aligned_cols=210  Identities=13%  Similarity=0.177  Sum_probs=147.7

Q ss_pred             HHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--
Q 013019          212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--  281 (451)
                      ...|++.+++++    |.    ++.++++++++|+..++.+++++||.|++++|+|......    +...|..+..++  
T Consensus        70 ~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~----~~~~g~~~~~v~~~  145 (382)
T d1b5pa_          70 IPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEM----VRFAGGVVVEVETL  145 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEECC
T ss_pred             CHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHH----HHHhcCeEEEEecc
Confidence            345666666654    32    4555554445999999999999999999999999986543    344566665553  


Q ss_pred             -----CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----ccccC--C
Q 013019          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSL--G  347 (451)
Q Consensus       282 -----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~pl~~--G  347 (451)
                           ..|+++++++++++ ++++++++|+||||.+++   +++|+++|+++|++||+|++|......    .+...  .
T Consensus       146 ~~~~~~~d~~~l~~~~~~~-~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  224 (382)
T d1b5pa_         146 PEEGFVPDPERVRRAITPR-TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE  224 (382)
T ss_dssp             GGGTTCCCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred             cccccCCCHHHHHHhCCCC-CeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCC
Confidence                 24899999999874 999999999999999985   778999999999999999998753221    12211  2


Q ss_pred             CcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh------HH-HHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KT-LHLRVQQQNSTALRM  420 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL------~t-l~~Rl~~~~~nA~~L  420 (451)
                      -.+++.|+||.++.+| ++.||+++++++++.+...+.......+......+...+      +. +....+...++.+.+
T Consensus       225 ~~i~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (382)
T d1b5pa_         225 HTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLL  303 (382)
T ss_dssp             TEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecchhhccCcH-hheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHH
Confidence            3588999999998776 578999999999998887766655554444333222211      11 222233444555666


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|.+.
T Consensus       304 ~~~l~~~  310 (382)
T d1b5pa_         304 LEGLTAL  310 (382)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            6666654

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=4.3e-20  Score=185.03  Aligned_cols=210  Identities=11%  Similarity=0.146  Sum_probs=151.5

Q ss_pred             HHHHHHHHHhhh----CC-----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          212 TVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----ga-----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      ..+|++.|++.+    +.     ++.++++++++++..++.+++++||+|++++|+|......+    ...|.++..++ 
T Consensus        64 ~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~----~~~g~~~~~~~~  139 (388)
T d1gdea_          64 LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVPT  139 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHH----HHcCCEEEEeec
Confidence            456777777654    21     34555555559999999999999999999999999866443    44566666553 


Q ss_pred             ------CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----c-cc--
Q 013019          282 ------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A-LS--  345 (451)
Q Consensus       282 ------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----p-l~--  345 (451)
                            ..|+++|+++++++ ++++++++|+||||.+++   +++|+++|+++|++||+||+|.......    + ..  
T Consensus       140 ~~~~~~~~d~~~l~~~~~~~-~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~  218 (388)
T d1gdea_         140 YEEDEFRLNVDELKKYVTDK-TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD  218 (388)
T ss_dssp             CGGGTTCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred             ccccCCCCCHHHHHHhCccC-CeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhcc
Confidence                  24899999999875 999999999999999985   7789999999999999999987542211    1 11  


Q ss_pred             --CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh------HHHHHHHHHHHHHH
Q 013019          346 --LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRVQQQNSTA  417 (451)
Q Consensus       346 --~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL------~tl~~Rl~~~~~nA  417 (451)
                        ....+++.|+||.++.+| .+.||+++++++++++...........+......+...+      +.+....+...++.
T Consensus       219 ~~~~~~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  297 (388)
T d1gdea_         219 GMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRR  297 (388)
T ss_dssp             TCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCChhhccCcc-ccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhh
Confidence              123589999999998666 578999999999998888776666555555444333322      22333344455666


Q ss_pred             HHHHHHHHcC
Q 013019          418 LRMAEILEAH  427 (451)
Q Consensus       418 ~~Lae~L~~~  427 (451)
                      ..+.+.|.+.
T Consensus       298 ~~~~~~l~~~  307 (388)
T d1gdea_         298 KLVWKRLNEM  307 (388)
T ss_dssp             HHHHHHHHHT
T ss_pred             hhhhhhhhhc
Confidence            6677777765

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=3e-20  Score=184.78  Aligned_cols=224  Identities=17%  Similarity=0.221  Sum_probs=160.9

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCC-eEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGG-HIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD-~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ..||+++...+|+++||+.+|. .+.|++++|+ ++|..++++++.+|| .|+++.|.|.....    .....|.++..+
T Consensus        50 l~rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~----~~~~~g~~v~~~  125 (354)
T d1fg7a_          50 LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSV----SAETIGVECRTV  125 (354)
T ss_dssp             TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHH----HHHHHTCEEEEC
T ss_pred             HhcCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchh----hhhccCceeecc
Confidence            5688999889999999999996 3455556666 999999999999999 58888999987553    334457777766


Q ss_pred             CC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHH--HhcCCEEEEecCCCCCCcccc-----ccCCC
Q 013019          281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLC--HKKGAIVCIDGTFATPLNQKA-----LSLGA  348 (451)
Q Consensus       281 d~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA--~~~g~~lVVD~tfa~~~~~~p-----l~~Ga  348 (451)
                      +.     .|+++++.++.  ++++|++++|+||||.+.+.+++..++  .+++.++++|++|........     .....
T Consensus       126 ~~~~~~~~d~~~l~~~~~--~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~  203 (354)
T d1fg7a_         126 PTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPH  203 (354)
T ss_dssp             CCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred             ccccccccchhhhhhccc--ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhccccc
Confidence            42     37889988774  489999999999999998755443332  346788999998754322111     12234


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI---IRGMKTLHLRVQQQNSTALRMAEILE  425 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~---lrgL~tl~~Rl~~~~~nA~~Lae~L~  425 (451)
                      .+++.|+||.++.+| .+.||+++++++++++.+.+..+............   ......+..++++..+..+.+.+.|.
T Consensus       204 ~iv~~S~SK~~~laG-lRiGy~i~~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~  282 (354)
T d1fg7a_         204 LAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALK  282 (354)
T ss_dssp             EEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEeCCccccCCCc-cccccccccchhhhhhhhhcCccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHH
Confidence            588999999998776 67899999999999988776554433211111111   12334455566667777888889999


Q ss_pred             cCCCeEEEe
Q 013019          426 AHPKVLLLF  434 (451)
Q Consensus       426 ~~p~V~~V~  434 (451)
                      +.+.+..+.
T Consensus       283 ~~~~~~~~~  291 (354)
T d1fg7a_         283 EIPCVEQVF  291 (354)
T ss_dssp             HSTTEEEEC
T ss_pred             hCCCcceeC
Confidence            999886653

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.84  E-value=6.3e-20  Score=185.36  Aligned_cols=219  Identities=16%  Similarity=0.178  Sum_probs=177.2

Q ss_pred             CCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .+.|..+.||+++|+++|.+.++.++||++|+.++++++ +++||+|+++..+|..+...+    ...|.++.++|.   
T Consensus        31 ~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai----~~~g~~p~~~d~~~~  106 (384)
T d1b9ha_          31 MGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAA----QRLGAVTVPVDVDAA  106 (384)
T ss_dssp             TTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTT
T ss_pred             cCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccccc----ccccccccccccccc
Confidence            357899999999999999999999999999999999997 799999999999999887543    456888888773   


Q ss_pred             ---CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc--cccccCCCcEEEECC--
Q 013019          283 ---ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSA--  355 (451)
Q Consensus       283 ---~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~--~~pl~~GaDiVv~S~--  355 (451)
                         .|++.+++.+.++ |++|+   +.+..|...|+++|.++|+++|+++|.|++++.+..  .++.....|+.+.|+  
T Consensus       107 ~~~~d~~~~~~~i~~~-tk~i~---~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~  182 (384)
T d1b9ha_         107 TYNLDPEAVAAAVTPR-TKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQN  182 (384)
T ss_dssp             TCCBCHHHHHHHCCTT-EEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCT
T ss_pred             ccccchhhhccccccc-ccccc---cccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceecccc
Confidence               3799999999885 99986   578889999999999999999999999999765532  222222247777665  


Q ss_pred             cccCCccccceeEEEEeC-HHHHHHHHHHhHh---------------hC--CCccHHHHHHHHHhhHHHHHHHHHHHHHH
Q 013019          356 TKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV---------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTA  417 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~---------------~G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA  417 (451)
                      +|.++...   ||+++++ +++.++++.++..               .|  ..++.+.|.+++..|+.+..++++..+++
T Consensus       183 ~K~i~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~~~~  259 (384)
T d1b9ha_         183 GKLMTAGE---GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERW  259 (384)
T ss_dssp             TSSSCSSS---CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cccccccc---cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhhhhh
Confidence            89987654   7887775 5676777665432               12  34788999999999999999999999999


Q ss_pred             HHHHHHHHcCCCeEEEecC
Q 013019          418 LRMAEILEAHPKVLLLFIT  436 (451)
Q Consensus       418 ~~Lae~L~~~p~V~~V~yP  436 (451)
                      ..+.+.|++.+++.....+
T Consensus       260 ~~y~~~L~~~~~i~~~~~~  278 (384)
T d1b9ha_         260 TLLSRLLGAIDGVVPQGGD  278 (384)
T ss_dssp             HHHHHHHHTSTTCEECCCC
T ss_pred             hhhhhhhhccccccccccc
Confidence            9999999999887654333

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=1.5e-19  Score=180.05  Aligned_cols=216  Identities=16%  Similarity=0.167  Sum_probs=163.0

Q ss_pred             CCCchh-HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          206 RYGNPT-TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       206 R~~npt-~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      +|+.+. ..+|+++||+.++.  ++.+++++|++++..++.+++++||.|++++|+|......+.    ..|..+..+. 
T Consensus        56 ~Y~~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~----~~g~~~~~~~~  131 (368)
T d1v2da_          56 QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF----LAGAKARLVRL  131 (368)
T ss_dssp             SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH----HTTCEEEEEEC
T ss_pred             CCCCCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHH----hcCCccceecc
Confidence            455544 67899999999986  556777777799999999999999999999999998765443    3344443321 


Q ss_pred             -------CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcccc------cc
Q 013019          282 -------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA------LS  345 (451)
Q Consensus       282 -------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~p------l~  345 (451)
                             ..|++.++++++++ +++|++++|+||||.+.+   +++|+++|++||+++|+|+.|........      ..
T Consensus       132 ~~~~~~~~~d~~~l~~~~~~~-~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~  210 (368)
T d1v2da_         132 DLTPEGFRLDLSALEKALTPR-TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA  210 (368)
T ss_dssp             EEETTEEECCHHHHHTTCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC
T ss_pred             ccccccccCCHHHHHHhhccC-ceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccccccccc
Confidence                   24899999999875 999999999999999986   77899999999999999999765322211      11


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh------HHHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRVQQQNSTALR  419 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL------~tl~~Rl~~~~~nA~~  419 (451)
                      ....+++.|++|.++.+| .+.|++++++++++.+...+...+...+......+...+      +.+....+...++...
T Consensus       211 ~~~~~~~~~~sk~~~~~G-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  289 (368)
T d1v2da_         211 PERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL  289 (368)
T ss_dssp             TTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccceeecccccccccc-cccccccccccccchhhhhhhccccccccccccccccccccccchhhHHHHHHHHHHhhhh
Confidence            234578899999888776 678999999999999988887777666665433333222      2334444556777888


Q ss_pred             HHHHHHcC
Q 013019          420 MAEILEAH  427 (451)
Q Consensus       420 Lae~L~~~  427 (451)
                      +.+.|+++
T Consensus       290 l~~~l~~~  297 (368)
T d1v2da_         290 LAGGLRAM  297 (368)
T ss_dssp             HHHHHHHT
T ss_pred             hhhhHHhc
Confidence            89999887

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.84  E-value=7.8e-20  Score=182.52  Aligned_cols=220  Identities=14%  Similarity=0.103  Sum_probs=165.4

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC---
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA---  283 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~---  283 (451)
                      ...+++++.||+++|+  ++.+++++|++++..++.++ .++||+|++++..|++++..+....++.|+++.+++..   
T Consensus        50 ~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~  129 (381)
T d1elua_          50 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL  129 (381)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecccccccccccccccccccccc
Confidence            4466789999999996  45777778889999999887 68999999999999998877777777789999988742   


Q ss_pred             ---C-HHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc----CCEEEEecCCCCCCc-cccccCCCcEEEEC
Q 013019          284 ---D-MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK----GAIVCIDGTFATPLN-QKALSLGADLVLHS  354 (451)
Q Consensus       284 ---D-~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~----g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S  354 (451)
                         + .+.+++++++ +|++|++++++|+||.+.|+++|.++|+++    |+++++|++++.+.. ...-++++|+++.|
T Consensus       130 ~~~~~~~~l~~~i~~-~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s  208 (381)
T d1elua_         130 NQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFT  208 (381)
T ss_dssp             SSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEE
T ss_pred             ccchHHHHHHhhhcc-cccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence               2 5667778877 499999999999999999999999999985    699999999876532 23335689999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhH----------------------hhCCCccHHHHHHHHHhhHH------H
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----------------------VLGGALNPNAAYLIIRGMKT------L  406 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~----------------------~~G~~ls~~~a~l~lrgL~t------l  406 (451)
                      ++|+++++.  ..|++..++++.+++.....                      ...++.+....+.+..+++.      .
T Consensus       209 ~~K~~~~p~--G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~  286 (381)
T d1elua_         209 GHKWFAGPA--GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTA  286 (381)
T ss_dssp             SSSTTCCCT--TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCH
T ss_pred             ccccccccc--hhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhccc
Confidence            999999875  35788888776655431110                      11122333333333333322      2


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          407 HLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      ..+.++..++++.+.+.|++.|+++.
T Consensus       287 ~~~~~~~~~~~~~l~~~L~~~~~~~~  312 (381)
T d1elua_         287 EERYQAICQRSEFLWRGLNQLPHVHC  312 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred             ccchhhhhhHHHHHHHHHhcCCCeEe
Confidence            34567777888999999999998855

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=2.3e-19  Score=178.48  Aligned_cols=212  Identities=19%  Similarity=0.234  Sum_probs=169.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      .|..++||+++++++|.+.+++++||++|+.+++.++ +++||+|+++...|.++...+    ...|....++|.     
T Consensus        30 G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai----~~~g~~pv~~d~~~~~~  105 (376)
T d1mdoa_          30 GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMI----VLLGANPVMVDVDRDTL  105 (376)
T ss_dssp             SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEECBCTTTC
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccch----hccccceeeeccccccc
Confidence            5899999999999999999999999999999999998 899999999999999877543    455778778763     


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccccccCC-CcEEEEC--Cccc
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHS--ATKF  358 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~pl~~G-aDiVv~S--~SK~  358 (451)
                       .|+++|+++++++ |++|++   .|..|...|+++|.++|+++|++||+|++++.+........| .|..+.|  .+|.
T Consensus       106 ~~d~~~l~~~i~~~-tkaIi~---~h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~  181 (376)
T d1mdoa_         106 MVTPEHIEAAITPQ-TKAIIP---VHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKN  181 (376)
T ss_dssp             CBCHHHHHHHCCTT-EEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSS
T ss_pred             CCCHHHHHHhcCCC-CeEEEE---eCCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCC
Confidence             3899999999985 999986   568899999999999999999999999997665332221111 2345555  5799


Q ss_pred             CCccccceeEEEEeCH-HHHHHHHHHhHh------------------------hCCCccHHHHHHHHHhhHHHHHHHHHH
Q 013019          359 IGGHNDVLAGSISGSG-KLVTQIRNLHHV------------------------LGGALNPNAAYLIIRGMKTLHLRVQQQ  413 (451)
Q Consensus       359 l~G~gdv~gG~Iv~~~-eli~~lr~~~~~------------------------~G~~ls~~~a~l~lrgL~tl~~Rl~~~  413 (451)
                      ++...   ||++++++ ++.++++.++..                        ....++...+.+....|+.+...+++.
T Consensus       182 l~~g~---GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~~~~r  258 (376)
T d1mdoa_         182 ITCAE---GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARR  258 (376)
T ss_dssp             SCSSS---CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCCCC---CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHHHHHH
Confidence            97654   78888765 566666655421                        113456777888888899999999999


Q ss_pred             HHHHHHHHHHHHcCCCeE
Q 013019          414 NSTALRMAEILEAHPKVL  431 (451)
Q Consensus       414 ~~nA~~Lae~L~~~p~V~  431 (451)
                      .+++..+.+.|.+.+.+.
T Consensus       259 ~~~~~~~~~~L~~~~~~~  276 (376)
T d1mdoa_         259 AAIAAQYHQAMADLPFQP  276 (376)
T ss_dssp             HHHHHHHHHHHHTSSCEE
T ss_pred             hhhhhhhhhhcccccccc
Confidence            999999999999887653

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.83  E-value=7.9e-19  Score=177.31  Aligned_cols=213  Identities=12%  Similarity=0.107  Sum_probs=144.2

Q ss_pred             HHHHHHHHhh----hCC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC---
Q 013019          213 VVVEEKMSAL----EGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID---  281 (451)
Q Consensus       213 ~~Lee~LA~l----~ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd---  281 (451)
                      .+|++.|++.    .|.    ++.++++++++++.+++.+++.+||+|++++|+|......    +...|.++..++   
T Consensus        73 ~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~----~~~~g~~~v~v~~~~  148 (395)
T d1xi9a_          73 PELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGL----VKFYGGKPVEYRTIE  148 (395)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEEEEG
T ss_pred             HHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhh----hhhcCCEEEEEeccc
Confidence            4455555544    453    4455565566999999999999999999999999875543    344566654442   


Q ss_pred             ----CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----cc---cCC
Q 013019          282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----AL---SLG  347 (451)
Q Consensus       282 ----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----pl---~~G  347 (451)
                          ..|++++++++.++ +++|++++|+||||.+.+   +++|+++|+++|+++|.|++|.......    +.   ...
T Consensus       149 ~~~~~~d~~~~~~~~~~~-~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  227 (395)
T d1xi9a_         149 EEDWQPDIDDIRKKITDR-TKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDV  227 (395)
T ss_dssp             GGTSEECHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSS
T ss_pred             cccccchHHHHHHhhccc-ccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCC
Confidence                13789999999874 999999999999999986   6788899999999999999986532211    11   122


Q ss_pred             CcEEEECCcccCCccccceeEEEEe--CHHHHHHHHHHh---HhhCCCccHHHHHH---HHH-hhHHHHHHHHHHHHHHH
Q 013019          348 ADLVLHSATKFIGGHNDVLAGSISG--SGKLVTQIRNLH---HVLGGALNPNAAYL---IIR-GMKTLHLRVQQQNSTAL  418 (451)
Q Consensus       348 aDiVv~S~SK~l~G~gdv~gG~Iv~--~~eli~~lr~~~---~~~G~~ls~~~a~l---~lr-gL~tl~~Rl~~~~~nA~  418 (451)
                      ..|++.|+||.++.+| .+.|+++.  +++.+..++...   .......+...+.+   .+. ..+.+....+...++.+
T Consensus       228 ~vi~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~  306 (395)
T d1xi9a_         228 PVIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRD  306 (395)
T ss_dssp             CEEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcchhcccch-hhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            3488999999999877 45676543  333333333322   22222222222222   222 33456666677778889


Q ss_pred             HHHHHHHcCCCeE
Q 013019          419 RMAEILEAHPKVL  431 (451)
Q Consensus       419 ~Lae~L~~~p~V~  431 (451)
                      .+.+.|++.+.+.
T Consensus       307 ~l~~~L~~~~~~~  319 (395)
T d1xi9a_         307 YIYKRLNEIPGIS  319 (395)
T ss_dssp             HHHHHHHTSTTEE
T ss_pred             HHHHHHHhCCCce
Confidence            9999999887653

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.82  E-value=5.9e-19  Score=179.27  Aligned_cols=210  Identities=17%  Similarity=0.203  Sum_probs=147.1

Q ss_pred             HHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          212 TVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       212 ~~~Lee~LA~l~ga----e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ++++.+++.+..|.    .+.|++++|. +|+..++++++++||.|++++|.|......+    ...|.++..++.    
T Consensus        72 ReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~----~~~g~~~~~v~~~~~~  147 (418)
T d2r5ea1          72 VQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPLKPNK  147 (418)
T ss_dssp             HHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECEESC
T ss_pred             HHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHH----HHcCCeEEEEEecccc
Confidence            33344444444442    2345555555 9999999999999999999999999866444    334555544421    


Q ss_pred             -----------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc-----c
Q 013019          283 -----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----A  343 (451)
Q Consensus       283 -----------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~-----p  343 (451)
                                 .+.+++.++..+ +++++++++|+||||.+++   +++|+++|+++|+++|.|++|.......     .
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~  226 (418)
T d2r5ea1         148 TGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRI  226 (418)
T ss_dssp             CSSCEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred             cccchhhhhhhhhHHHHhhhhhc-cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccc
Confidence                       357788887766 4999999999999999986   5678889999999999999986532211     1


Q ss_pred             cc----CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH-----------HHHH
Q 013019          344 LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----------TLHL  408 (451)
Q Consensus       344 l~----~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~-----------tl~~  408 (451)
                      ..    ....+++.|+||.++.+| .+.||+++++++++.+...+.......+...+..+...+.           .+..
T Consensus       227 ~~~~~~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  305 (418)
T d2r5ea1         227 CTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNS  305 (418)
T ss_dssp             GGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHH
T ss_pred             cccccccceeeeeecCCccccCCC-cccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHH
Confidence            11    123488999999998776 6789999999999998887765555444443333322221           2333


Q ss_pred             HHHHHHHHHHHHHHHHHcC
Q 013019          409 RVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ..+...++.+.+.+.|++.
T Consensus       306 ~~~~~~~~r~~l~~~L~~~  324 (418)
T d2r5ea1         306 ISGELMAKRDYMASFLAEV  324 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhHHhhHhhc
Confidence            3455566778888999886

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.82  E-value=9.6e-19  Score=176.32  Aligned_cols=218  Identities=11%  Similarity=0.085  Sum_probs=142.9

Q ss_pred             CccccCCCchhHHHHHHHHHhhh----CC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhc
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK  272 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~----ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~  272 (451)
                      .+.|.. +.+   +|++.|++++    |.    ++.++++++++++..++++++++||+|++++|.|.+.+..+    ..
T Consensus        61 ~~~Y~~-g~~---~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~----~~  132 (394)
T d1c7na_          61 VLGYTG-PTE---EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAI----KN  132 (394)
T ss_dssp             CCSSBC-CCH---HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHH----HT
T ss_pred             CcCCCC-CCH---HHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHH----hh
Confidence            355654 232   4566666554    42    45666666669999999999999999999999998876544    33


Q ss_pred             CCcEEEEeCC--------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc
Q 013019          273 MGITATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ  341 (451)
Q Consensus       273 ~Gi~v~~vd~--------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~  341 (451)
                      .|.....++.        .|.+.++.++..+++++|++++|+||||.+.+   +++|+++|++++++||+|++|......
T Consensus       133 ~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~  212 (394)
T d1c7na_         133 QERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP  212 (394)
T ss_dssp             TTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT
T ss_pred             hhhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccC
Confidence            4444333321        36777887776556999999999999999986   677889999999999999998753211


Q ss_pred             ----cccc------CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCcc-HHHHH---HHHHh-hHHH
Q 013019          342 ----KALS------LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALN-PNAAY---LIIRG-MKTL  406 (451)
Q Consensus       342 ----~pl~------~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls-~~~a~---l~lrg-L~tl  406 (451)
                          .+..      ....+++.|+||.++.+|..+|++++.++++.+.++........... ...+.   ..... .+.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  292 (394)
T d1c7na_         213 GYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWL  292 (394)
T ss_dssp             TCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHH
T ss_pred             CccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhhhccccccccccchhhhhhhcchhhhh
Confidence                1111      12458899999999877754455555566777777776655443322 22211   11222 2333


Q ss_pred             HHHHHHHHHHHHHHHHHHHc
Q 013019          407 HLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       407 ~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      ....+...++.+.+.+.|+.
T Consensus       293 ~~~~~~~~~~~~~~~~~l~~  312 (394)
T d1c7na_         293 DGCIKVIDKNQRIVKDFFEV  312 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhhhhc
Confidence            33344444555566666664

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.4e-19  Score=179.98  Aligned_cols=162  Identities=20%  Similarity=0.280  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH----ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          212 TVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       212 ~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~al----l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      .+++++++|+++|+  ++.++++++++++..++.++    +++||+|++.++.|++....+. .++..|++++.++.   
T Consensus        50 ~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~~  128 (391)
T d1p3wa_          50 VDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCR-QLEREGFEVTYLAPQRN  128 (391)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHH-HHHHTTCEEEEECCCTT
T ss_pred             HHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHH-HHHHcCCEEEEeCCCCC
Confidence            45678899999997  35666677778888777654    5899999999999998776553 45667999998864   


Q ss_pred             --CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc-cccccCCCcEEEECCcccC
Q 013019          283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 --~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~-~~pl~~GaDiVv~S~SK~l  359 (451)
                        .|+++++++++++ |++|++++|+||||.+.|+++|+++||++|+++++|.+++.+.. .+....++|+++.|.+|++
T Consensus       129 ~~~d~~~~~~~i~~~-T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~  207 (391)
T d1p3wa_         129 GIIDLKELEAAMRDD-TILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIY  207 (391)
T ss_dssp             SCCCHHHHHHHCCTT-EEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTT
T ss_pred             CeEcHHHHHHhCCCC-cEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhcccccccccccccc
Confidence              3689999999885 99999999999999999999999999999999999999876532 3334568999999999999


Q ss_pred             CccccceeEEEEeCHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVT  378 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~  378 (451)
                      ++++   .|+++.+++.+.
T Consensus       208 g~~g---~g~~~~~~~~~~  223 (391)
T d1p3wa_         208 GPKG---IGALYVRRKPRV  223 (391)
T ss_dssp             SCSS---CEEEEECBTTBC
T ss_pred             CCCc---eEEEEEecchhc
Confidence            8776   677777765443

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.80  E-value=5.4e-18  Score=171.46  Aligned_cols=201  Identities=13%  Similarity=0.145  Sum_probs=139.6

Q ss_pred             CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-------CCHHHHHHhhcCCCeE
Q 013019          226 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNNNNVS  298 (451)
Q Consensus       226 e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-------~D~d~Le~ai~~~~tk  298 (451)
                      ++.++++++++|+..++.+++++||+|++++|+|.....    .+...|+++..++.       .+++++++++.+. ++
T Consensus       102 ~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~----~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~~~-~~  176 (412)
T d1bw0a_         102 DNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET----VCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK-TK  176 (412)
T ss_dssp             GGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT-EE
T ss_pred             CeEEEecccccchhhhhhhhhccccceeeeeccchhhhh----hhhccCccccccccccccccchhhHHHHhhhhcc-cc
Confidence            345555555599999999999999999999999987653    34556777766542       3688999988774 99


Q ss_pred             EEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc--c---c------c-CCCcEEEECCcccCCccc
Q 013019          299 LFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK--A---L------S-LGADLVLHSATKFIGGHN  363 (451)
Q Consensus       299 lV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~--p---l------~-~GaDiVv~S~SK~l~G~g  363 (451)
                      ++++++|+||||.+.+   +++|.++|++++++||+|++|.......  +   .      + ...-+++.|+||.++.+|
T Consensus       177 ~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G  256 (412)
T d1bw0a_         177 LLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPG  256 (412)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGG
T ss_pred             ccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCC
Confidence            9999999999999975   6788888999999999999986532211  0   0      0 012377889999999887


Q ss_pred             cceeEEEEeCH------HHHHHHHHHhHhhCCCccHHHHHHHHH---h-hHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          364 DVLAGSISGSG------KLVTQIRNLHHVLGGALNPNAAYLIIR---G-MKTLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       364 dv~gG~Iv~~~------eli~~lr~~~~~~G~~ls~~~a~l~lr---g-L~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                       .+.|++++++      +++..................+.+...   . -+.+....++..++.+.+.+.|.+++++..
T Consensus       257 -~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~  334 (412)
T d1bw0a_         257 -WRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAP  334 (412)
T ss_dssp             -GCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred             -CCcccccccchhhcchhhhhhhccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHhcCcee
Confidence             5678877643      344444444333333333332222221   1 234455566677788889999988887754

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=8.1e-18  Score=167.69  Aligned_cols=210  Identities=15%  Similarity=0.172  Sum_probs=149.2

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--
Q 013019          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--  281 (451)
                      ...|++.+++++    |    .++.+++++|++|+..++.+++++||.|++++|.|......+    ...+.....++  
T Consensus        67 ~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~----~~~~~~~~~~~~~  142 (375)
T d1o4sa_          67 IYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQI----ILAGGTVNVVETF  142 (375)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECC
T ss_pred             CHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhh----hcccccccccccc
Confidence            445666666554    3    245666666679999999999999999999999998865443    23444444432  


Q ss_pred             -----CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc----c----ccc
Q 013019          282 -----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----K----ALS  345 (451)
Q Consensus       282 -----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~----~----pl~  345 (451)
                           ..|.+.++....+ +++++++++|+||||.+..   +++|+++|++|+++||+|++|......    .    +..
T Consensus       143 ~~~~~~~~~~~~~~~~~~-~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  221 (375)
T d1o4sa_         143 MSKNFQPSLEEVEGLLVG-KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG  221 (375)
T ss_dssp             GGGTTCCCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS
T ss_pred             ccccccchhHHHHHhhcc-CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCC
Confidence                 2367888887776 4999999999999999985   778889999999999999997653221    1    112


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-LHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t-l~~Rl~~~~~nA~~Lae~L  424 (451)
                      .+..+++.|+||.++.+| .+.|++++++++++.+...+..................++. .....+...++.+.+.+.|
T Consensus       222 ~~~~i~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l  300 (375)
T d1o4sa_         222 FDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERL  300 (375)
T ss_dssp             STTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeechhhccCCc-cccccccccccchhhhhhhhccccccccccchhhhhhhcccchhhhHHHHHHHHHHHHHHH
Confidence            345699999999998666 67999999999998888777666655555444433333322 2223344556667777788


Q ss_pred             HcC
Q 013019          425 EAH  427 (451)
Q Consensus       425 ~~~  427 (451)
                      +++
T Consensus       301 ~~~  303 (375)
T d1o4sa_         301 KKM  303 (375)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            775

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.3e-17  Score=166.68  Aligned_cols=212  Identities=11%  Similarity=0.124  Sum_probs=164.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+...+||++||+++|.+.+++++||+.|+..++.++..++|.|++....|.+....    .+..+.++..+...|.+++
T Consensus        82 ~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g----~~~~~~~~~~~~hnd~~~l  157 (383)
T d1bs0a_          82 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHNDVTHL  157 (383)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTTCHHHH
T ss_pred             chHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhc----cccCCCcceEecchHHHHH
Confidence            477899999999999999999999999999999999999999999999988876543    3445677788888999999


Q ss_pred             HHhhcCC--CeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc-------ccCCCcEEEECCcccC
Q 013019          289 EAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA-------LSLGADLVLHSATKFI  359 (451)
Q Consensus       289 e~ai~~~--~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p-------l~~GaDiVv~S~SK~l  359 (451)
                      ++.+...  +.++|++|.+.|++|.+.|+++|.++|++||+++++|++++.+.....       .....|+++.+++|.+
T Consensus       158 e~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~  237 (383)
T d1bs0a_         158 ARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF  237 (383)
T ss_dssp             HHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred             HHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccc
Confidence            8888542  368999999999999999999999999999999999999877644321       1234578999999999


Q ss_pred             CccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHcCC
Q 013019          360 GGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~t-----l~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      +..    ||++.++.++++.++....  .++..++|..+..++..++-     ...+.++..++...+.+.|.+.+
T Consensus       238 g~~----Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g  309 (383)
T d1bs0a_         238 GVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP  309 (383)
T ss_dssp             SSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             ccc----ccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            876    6899999999998886543  23445566554444444332     23344555566666666665543

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=8.4e-18  Score=166.74  Aligned_cols=221  Identities=18%  Similarity=0.138  Sum_probs=141.1

Q ss_pred             CccccCCCc-hhHHHHHHHHHhhhCC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCc
Q 013019          201 SFEYGRYGN-PTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI  275 (451)
Q Consensus       201 ~~~Y~R~~n-pt~~~Lee~LA~l~ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi  275 (451)
                      .+.|+..+. +.++++.+.+++.+|.    ++.++++++++++..++.+++++||+|++++|.|......+    ...|.
T Consensus        29 ~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~g~  104 (361)
T d1d2fa_          29 VFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EGNQR  104 (361)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHH----HHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccccccccccccccccchhHHH----Hhhcc
Confidence            345665443 2333444444444453    55667777779999999999999999999999998866444    33455


Q ss_pred             EEEEeC----C----CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc---
Q 013019          276 TATVID----P----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---  341 (451)
Q Consensus       276 ~v~~vd----~----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~---  341 (451)
                      .+..+.    .    .|++.+++.+.+.++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|......   
T Consensus       105 ~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~  184 (361)
T d1d2fa_         105 TVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQP  184 (361)
T ss_dssp             EEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSC
T ss_pred             eEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhhhhheeeeeccccccccccccc
Confidence            443332    1    48899999997667999999999999998875   789999999999999999998753211   


Q ss_pred             ----ccccCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHH-HHHhHhhCC-CccHHHHHHHHHhh----HHHHHHH
Q 013019          342 ----KALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQI-RNLHHVLGG-ALNPNAAYLIIRGM----KTLHLRV  410 (451)
Q Consensus       342 ----~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~l-r~~~~~~G~-~ls~~~a~l~lrgL----~tl~~Rl  410 (451)
                          ........+++.|+||.++.+| .++|+++.. +...+++ .......+. ..........+..+    +......
T Consensus       185 ~~~~~~~~~~~~v~~~s~SK~~~~~g-~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  263 (361)
T d1d2fa_         185 HIPWSNVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALR  263 (361)
T ss_dssp             CCCGGGTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccc-ccceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhhccchhhhccc
Confidence                1112223588899999887665 467887654 4343333 333333322 22222222222222    2233334


Q ss_pred             HHHHHHHHHHHHHHHc
Q 013019          411 QQQNSTALRMAEILEA  426 (451)
Q Consensus       411 ~~~~~nA~~Lae~L~~  426 (451)
                      +...++.+.+.+.+.+
T Consensus       264 ~~~~~r~~~~~~~~~~  279 (361)
T d1d2fa_         264 IYLKDNLTYIADKMNA  279 (361)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHhhh
Confidence            4455566666666544

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=7.2e-18  Score=168.89  Aligned_cols=212  Identities=13%  Similarity=0.146  Sum_probs=141.0

Q ss_pred             HHHHHHHHHhh----hCC----CcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          212 TVVVEEKMSAL----EGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       212 ~~~Lee~LA~l----~ga----e~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ..+|++.++++    .|.    ++.++++++++++..++.+++.+||.|++++|.|......+    ...|..+..++. 
T Consensus        66 ~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~----~~~g~~~~~~~~~  141 (389)
T d2gb3a1          66 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFA----KIAGVKLIPVTRR  141 (389)
T ss_dssp             CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHH----HHHTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccc----cccCccccccccc
Confidence            34555555554    342    44444444448999999999999999999999998766443    344555444432 


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----c--ccCCC
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A--LSLGA  348 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----p--l~~Ga  348 (451)
                           .+.+.+...+.+ +++++++++|+||||.+.+   +++|.++|+++|++||+|++|.......    .  .....
T Consensus       142 ~~~~~~~~~~~~~~~~~-~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~  220 (389)
T d2gb3a1         142 MEEGFAIPQNLESFINE-RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDK  220 (389)
T ss_dssp             GGGTSCCCTTGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTT
T ss_pred             cccccchhhhhhhhccc-CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccccccc
Confidence                 123445555655 4999999999999999985   7889999999999999999986532211    1  11234


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHH-HHHHHhHhhCCCccHHHHHHH---HHhh-HHHHHHHHHHHHHHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGALNPNAAYLI---IRGM-KTLHLRVQQQNSTALRMAEI  423 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~-~lr~~~~~~G~~ls~~~a~l~---lrgL-~tl~~Rl~~~~~nA~~Lae~  423 (451)
                      .+++.|+||.++.+| .+.|+++++++.+. .+.... ............++   +... +.+....+...++.+.+.+.
T Consensus       221 ~~v~~s~sK~~~~~G-lRiG~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  298 (389)
T d2gb3a1         221 VVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKLA-QGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKK  298 (389)
T ss_dssp             EEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHHH-HHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCcc-cceeeeeccchhHHHHHhhhh-hccccccccccccccccccccchhcccccccccccchhhhhh
Confidence            588999999999887 57888888665444 343333 33333333333222   2222 23444455666788889999


Q ss_pred             HHcCCCe
Q 013019          424 LEAHPKV  430 (451)
Q Consensus       424 L~~~p~V  430 (451)
                      |++++.+
T Consensus       299 L~~~~~~  305 (389)
T d2gb3a1         299 LEEHGLK  305 (389)
T ss_dssp             HHHTTCC
T ss_pred             hhhhccc
Confidence            9988654

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.3e-18  Score=171.74  Aligned_cols=212  Identities=15%  Similarity=0.126  Sum_probs=150.5

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC----CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA----ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga----e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      ..+|+++...+|+++||++++.    .+.|++++|+ +++.++    +++||+|++.+|+|......    +...|+++.
T Consensus        50 ~~~yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l----~~~~d~v~i~~P~y~~~~~~----~~~~g~~~v  121 (334)
T d2f8ja1          50 LRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM----MLMFDRSVFFPPTYSCYRIF----AKAVGAKFL  121 (334)
T ss_dssp             GGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHH----HHHSSEEEECSSCCHHHHHH----HHHHTCCEE
T ss_pred             hcCCCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHH----hhhccccccccccccccccc----hhccCCccc
Confidence            3445666667899999998763    3446677777 666554    45689999999999886543    445688888


Q ss_pred             EeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc----cccccCCCcEEEEC
Q 013019          279 VIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALSLGADLVLHS  354 (451)
Q Consensus       279 ~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~----~~pl~~GaDiVv~S  354 (451)
                      .++..+-....++..+ +++++++++|+||||.+.+.+.|.++ .++++++|+|+.|.....    .........+++.|
T Consensus       122 ~v~~~~~~~~~~~~~~-~~~~l~l~nP~NPtG~~~s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S  199 (334)
T d2f8ja1         122 EVPLTKDLRIPEVNVG-EGDVVFIPNPNNPTGHVFEREEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRT  199 (334)
T ss_dssp             ECCCCTTSCCCCCCCC-TTEEEEEESSCTTTCCCCCHHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEE
T ss_pred             cccccccccccccccc-cceEEEecccccccceeecHHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEEec
Confidence            8775421111122333 48999999999999999999888776 457999999998643211    11122234589999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA---AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~---a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      +||.++.+| .+.|+++++++++++++..+..++  ++...   +...+...+.+..++++..++.+.+.+.|++++
T Consensus       200 ~SK~~~~~G-~R~G~~~~~~~~i~~l~~~~~~~~--~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  273 (334)
T d2f8ja1         200 FSKAFSLAA-QRVGYVVASEKFIDAYNRVRLPFN--VSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG  273 (334)
T ss_dssp             STTTSSCTT-TCEEEEEECHHHHHHHHHHSCTTC--SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Cccccchhh-hhhhhcccchHHHHHHHHhhcccc--cchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC
Confidence            999998776 678999999999999988775544  33333   333344556666677788888889999999874

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.79  E-value=6.3e-18  Score=172.51  Aligned_cols=216  Identities=15%  Similarity=0.193  Sum_probs=142.2

Q ss_pred             HHHHHHHHHhhh----C----C-CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC
Q 013019          212 TVVVEEKMSALE----G----A-ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID  281 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----a-e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd  281 (451)
                      ..+|++.||+++    |    . ++.|++++| ++|+..++.+++++||+|++++|.|+.....+.   ...|+++..++
T Consensus        86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~---~~~g~~~v~v~  162 (431)
T d1m7ya_          86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPIH  162 (431)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT---TTTCCEEEEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH---HhcCceecccc
Confidence            345666666654    3    1 234455555 599999999999999999999999987664331   23467665553


Q ss_pred             C-------CCHHHHHHhhcC-----CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----
Q 013019          282 P-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----  341 (451)
Q Consensus       282 ~-------~D~d~Le~ai~~-----~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----  341 (451)
                      .       .|++++++++++     .++++|++++|+||||.+.+   +++|.++|+++|++||+|++|+.....     
T Consensus       163 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~  242 (431)
T d1m7ya_         163 CTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFI  242 (431)
T ss_dssp             CCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCC
T ss_pred             ccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCC
Confidence            2       367777766642     25899999999999999986   778899999999999999998643211     


Q ss_pred             cccc-------------CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHH--HHhh---
Q 013019          342 KALS-------------LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLI--IRGM---  403 (451)
Q Consensus       342 ~pl~-------------~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~--lrgL---  403 (451)
                      ..+.             ....+++.|+||.++.+| .++|+++++++++..............++..+.+.  +...   
T Consensus       243 s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~  321 (431)
T d1m7ya_         243 SVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLT  321 (431)
T ss_dssp             CHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHHH
T ss_pred             CHHHHhhhcccccccccCceEEEEecCcccccCCC-CccceeccchhhhHHHHHHHhccccccccccchhhhhhccchhh
Confidence            1111             012388999999998776 57899999888776555444444433333322211  1111   


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          404 K-TLHLRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       404 ~-tl~~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      + .+....++..++.+.+.+.|++ +++..
T Consensus       322 ~~~~~~~~~~~~~~~~~l~~~L~~-~gi~~  350 (431)
T d1m7ya_         322 KNYIAENHKRLKQRQKKLVSGLQK-SGISC  350 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-TTCEE
T ss_pred             hhhhhhhhhhhhhhhhhhhhhhhc-CCcEE
Confidence            1 2333344455667778888876 45543

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.3e-18  Score=171.22  Aligned_cols=213  Identities=15%  Similarity=0.207  Sum_probs=149.1

Q ss_pred             HHHHHHHHHhh----hCCC----cEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          212 TVVVEEKMSAL----EGAE----STVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       212 ~~~Lee~LA~l----~gae----~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      ...|++.|+++    +|.+    +.|++++|+ +|+..++.+++.+||.|++++|.|+.....+    ...|.+...+. 
T Consensus        66 ~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~----~~~g~~~v~~~~  141 (418)
T d1w7la_          66 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMT----MMAGGRPVFVSL  141 (418)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHH----HHcCCEeecccc
Confidence            44566555555    4532    335555555 9999999999999999999999999866444    33444433221 


Q ss_pred             ----------------CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-
Q 013019          282 ----------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-  341 (451)
Q Consensus       282 ----------------~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-  341 (451)
                                      ..|.+++....++ ++++|++++|+||||.+.+   +++|.++|+++++++|+|++|...... 
T Consensus       142 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~  220 (418)
T d1w7la_         142 KPGPIQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG  220 (418)
T ss_dssp             EECC---CCSEEGGGEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             ccccccccccccccCcccchhhhhccccc-cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCC
Confidence                            1256677777766 4999999999999999985   778999999999999999998653211 


Q ss_pred             ----ccccC----CCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhH---------
Q 013019          342 ----KALSL----GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---------  404 (451)
Q Consensus       342 ----~pl~~----GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~---------  404 (451)
                          ....+    .-.+++.|+||.++.+| .+.||++++++++++++..+.......+......+...+.         
T Consensus       221 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG-~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~  299 (418)
T d1w7la_         221 HQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP  299 (418)
T ss_dssp             CCCCCGGGSTTTGGGEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTST
T ss_pred             CCCCCHHHccccccccceecccCccccCCC-CcccccccchhhhhhhccccccccccccchhhHHHHHHhhhcccccccc
Confidence                11111    13588999999998776 6789999999999999888776655555554333333322         


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 013019          405 --TLHLRVQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       405 --tl~~Rl~~~~~nA~~Lae~L~~~p~V~  431 (451)
                        .+....++..++++.+.+.|++. ++.
T Consensus       300 ~~~~~~~~~~~~~~r~~l~~~L~~~-g~~  327 (418)
T d1w7la_         300 SSYFVQFPQAMQRCRDHMIRSLQSV-GLK  327 (418)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHTT-TCE
T ss_pred             ccccccchhhhhhhhhhhhhhhhhc-CCc
Confidence              23334455667777888889876 443

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.6e-18  Score=173.10  Aligned_cols=167  Identities=19%  Similarity=0.208  Sum_probs=139.7

Q ss_pred             hhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHH----HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          210 PTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~a----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...++.++.+++++|+   ++.+++.++++++..++.+    ..++||+|++.+..|++....+....++.|+++++++.
T Consensus        66 ~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~  145 (405)
T d1jf9a_          66 EKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL  145 (405)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB
T ss_pred             HHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECC
Confidence            3456678999999984   3556666777888877765    35889999999999999887777777888999999863


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCc
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT  356 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~S  356 (451)
                           .|++.++++++++ |++|.+...+|.+|.+.|+++|.++||++|+++++|.+++.+. ..+..++|+|+++.|++
T Consensus       146 ~~~g~~~~~~~~~~i~~~-t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~h  224 (405)
T d1jf9a_         146 NPDGTLQLETLPTLFDEK-TRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGH  224 (405)
T ss_dssp             CTTSCBCGGGHHHHCCTT-EEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGG
T ss_pred             CCCCcCCHHHHHHhccCC-cEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeecccc
Confidence                 3688899999885 9999999999999999999999999999999999999988774 34555789999999999


Q ss_pred             ccCCccccceeEEEEeCHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGSGKLVTQI  380 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~~eli~~l  380 (451)
                      ||+|++|   .|+++.++++++++
T Consensus       225 K~~Gp~G---~g~l~v~~~~~~~~  245 (405)
T d1jf9a_         225 KLYGPTG---IGILYVKEALLQEM  245 (405)
T ss_dssp             GTTSCSS---CEEEEECHHHHTTC
T ss_pred             ccccCCC---ceeeeechhhhccc
Confidence            9987766   78888898876543

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.77  E-value=2.1e-17  Score=168.51  Aligned_cols=210  Identities=15%  Similarity=0.199  Sum_probs=135.8

Q ss_pred             HHHHHHHHhhh----C------CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          213 VVVEEKMSALE----G------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       213 ~~Lee~LA~l~----g------ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      .+|++.||+++    |      .++.++++++++++..++.+++.+||+|++++|+|......+   ....|+++..++.
T Consensus        86 ~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~---~~~~g~~~v~v~~  162 (428)
T d1iaya_          86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPIHC  162 (428)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHT---TTTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHH---HHhcCCeEEEeec
Confidence            45666666653    3      234444444459999999999999999999999999865432   2234788777653


Q ss_pred             -------CCHHHHHHhhc-----CCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----c
Q 013019          283 -------ADMEGLEAALN-----NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A  343 (451)
Q Consensus       283 -------~D~d~Le~ai~-----~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----p  343 (451)
                             .|+++++.+++     ..++++|++++|+||||.+.+   +++|.++|++||++||+|++|+......    +
T Consensus       163 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s  242 (428)
T d1iaya_         163 ESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVS  242 (428)
T ss_dssp             CTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCC
T ss_pred             ccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccc
Confidence                   25666654432     225899999999999999986   6889999999999999999986432110    0


Q ss_pred             c------------cCCCcEEEECCcccCCccccceeEEEEeC-HHHHHHHHHHhHhhCCCccHHHHHH-H-H---HhhH-
Q 013019          344 L------------SLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGALNPNAAYL-I-I---RGMK-  404 (451)
Q Consensus       344 l------------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~~G~~ls~~~a~l-~-l---rgL~-  404 (451)
                      +            .....+++.|+||.++.+| .+.|++++. +++.+.++..... +....+....+ + +   ..++ 
T Consensus       243 ~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-lRiG~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~a~l~~~~~~~~  320 (428)
T d1iaya_         243 IAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSF-GLVSTQTQYFLAAMLSDEKFVDN  320 (428)
T ss_dssp             HHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTT-SCCCHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccchhhccccccceEEEEecCCCcccCCC-cccccccccccchhhhhhhhhcc-cccccccccchhhhhhhhccccc
Confidence            0            0112488999999998766 568888875 5566666554433 32222222111 1 1   1112 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Q 013019          405 TLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       405 tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      .+....++..++.+.+.+.|+..
T Consensus       321 ~~~~~~~~l~~r~~~~~~~L~~~  343 (428)
T d1iaya_         321 FLRESAMRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccchhHHHHHHHHHhC
Confidence            22333444556667778888753

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.77  E-value=2.5e-17  Score=165.65  Aligned_cols=209  Identities=11%  Similarity=0.088  Sum_probs=138.0

Q ss_pred             HHHHHHHHHhhh----C----CCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC
Q 013019          212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA  283 (451)
Q Consensus       212 ~~~Lee~LA~l~----g----ae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~  283 (451)
                      ..+|++.||+++    |    .++.++++++++++..++.+++++||+|++++|+|......+    ...|.++..++..
T Consensus        73 ~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~----~~~g~~~~~v~~~  148 (403)
T d1wsta1          73 FTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAF----KYYDPEFISIPLD  148 (403)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HTTCCEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHH----hhccccceeEeec
Confidence            455666666653    3    244555555559999999999999999999999999866443    4556665554321


Q ss_pred             ----CHHH-------HHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCc----ccc--
Q 013019          284 ----DMEG-------LEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKA--  343 (451)
Q Consensus       284 ----D~d~-------Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~----~~p--  343 (451)
                          +...       .....++ .+.++++.+|+||||.+.+   +++|+++|++||++||+|++|.....    ..+  
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~  227 (403)
T d1wsta1         149 DKGMRVDLLEEKLEELRKQGKR-VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIK  227 (403)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCC-CCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGG
T ss_pred             ccCCccccccccchhhhhcccc-ccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCccc
Confidence                2221       1222222 3678888999999999986   56888899999999999999864311    111  


Q ss_pred             --ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHH--h---h-HHHHHHHHHHHH
Q 013019          344 --LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR--G---M-KTLHLRVQQQNS  415 (451)
Q Consensus       344 --l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lr--g---L-~tl~~Rl~~~~~  415 (451)
                        ...+..+++.|+||.++ +| .+.||+++++++++.+...........+.........  .   . +.+....+...+
T Consensus       228 ~~~~~~~~i~~~S~SK~~~-~G-~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (403)
T d1wsta1         228 HFDDYGRVIYLGTFSKILA-PG-FRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKP  305 (403)
T ss_dssp             GGCSSSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEccccceec-Cc-ccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHH
Confidence              12356799999999985 55 6899999999999988776655444444433222111  1   1 112333444556


Q ss_pred             HHHHHHHHHHcC
Q 013019          416 TALRMAEILEAH  427 (451)
Q Consensus       416 nA~~Lae~L~~~  427 (451)
                      +.+.+.+.|.++
T Consensus       306 ~~~~~~~~L~~~  317 (403)
T d1wsta1         306 RRDAMLEALEEY  317 (403)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            666777777664

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.76  E-value=2.8e-17  Score=164.01  Aligned_cols=208  Identities=14%  Similarity=0.110  Sum_probs=165.8

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC----
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~----  283 (451)
                      .|..+.||+.+++++|.+.+++++||++|+.++++++ +++||+|+++..+|..+...    +...|..+.++|.+    
T Consensus        20 G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~----~~~~g~~pv~~Di~~~~~   95 (374)
T d1o69a_          20 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAP----ICYLKAKPVFIDCDETYN   95 (374)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHH----HHHTTCEEEEECBCTTSS
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHH----HhhccceeEecccccccc
Confidence            5889999999999999999999999999999999998 88999999999999988743    34568898898854    


Q ss_pred             --CHH--HHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCc--cccccCCCcEEEECC--
Q 013019          284 --DME--GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN--QKALSLGADLVLHSA--  355 (451)
Q Consensus       284 --D~d--~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~--~~pl~~GaDiVv~S~--  355 (451)
                        +.+  .++..+.+ ++++|++   .+..|...|+++|.++|+++|++||.|++.+.+..  .....--.|+.+.||  
T Consensus        96 ~~~~~~~~~~~~~~~-~~~aii~---~~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~fSf~~  171 (374)
T d1o69a_          96 IDVDLLKLAIKECEK-KPKALIL---THLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNG  171 (374)
T ss_dssp             BCHHHHHHHHHHCSS-CCCEEEE---ECGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred             cccccccccchhccc-ccccccc---cccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEEeccC
Confidence              122  33345555 4888886   66789999999999999999999999999765532  232222259999997  


Q ss_pred             cccCCccccceeEEEEeC-HHHHHHHHHHhHh------------hC--CCccHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 013019          356 TKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRM  420 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~------------~G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~L  420 (451)
                      +|.++..+   ||+++++ +++.++++.++..            +|  ..++.+.|.+.+..|+.+...+++..+++..+
T Consensus       172 ~K~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i~~~y  248 (374)
T d1o69a_         172 NKIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWY  248 (374)
T ss_dssp             TSSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cccccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHHHHHH
Confidence            58887665   6776664 6777887766532            12  34788999999999999999999999999999


Q ss_pred             HHHHHcC
Q 013019          421 AEILEAH  427 (451)
Q Consensus       421 ae~L~~~  427 (451)
                      .+.|.+.
T Consensus       249 ~~~L~~~  255 (374)
T d1o69a_         249 KEFLGEY  255 (374)
T ss_dssp             HHHHTTT
T ss_pred             Hhhcccc
Confidence            9999764

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2.2e-17  Score=167.29  Aligned_cols=215  Identities=15%  Similarity=0.157  Sum_probs=139.9

Q ss_pred             HHHHHHHHHhh----hCC----CcEEEeCCH-HHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC
Q 013019          212 TVVVEEKMSAL----EGA----ESTVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP  282 (451)
Q Consensus       212 ~~~Lee~LA~l----~ga----e~~vv~sSG-~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~  282 (451)
                      ...|+++||++    .|.    ++.|++++| ++|+..++.+++.+||+|++++|.|......    ++..|.++..++.
T Consensus        82 ~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~----~~~~g~~~~~~~~  157 (420)
T d1vp4a_          82 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINA----FRQYLANFVVVPL  157 (420)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHH----HHHHhhhcccccc
Confidence            34455555554    342    334555555 4999999999999999999999999976533    4455776665542


Q ss_pred             ----CCHHHHHHhhc--------CCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----c
Q 013019          283 ----ADMEGLEAALN--------NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A  343 (451)
Q Consensus       283 ----~D~d~Le~ai~--------~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----p  343 (451)
                          .|++.++..+.        .+.+.++++++|+||||.+.+   +++|+++|+++++++|+|++|.......    +
T Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~  237 (420)
T d1vp4a_         158 EDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDP  237 (420)
T ss_dssp             ETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCC
T ss_pred             cccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccc
Confidence                25555443321        122556778899999999975   6889999999999999999987532211    1


Q ss_pred             ----ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh------HHHHHHHHHH
Q 013019          344 ----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM------KTLHLRVQQQ  413 (451)
Q Consensus       344 ----l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL------~tl~~Rl~~~  413 (451)
                          ...+..+++.|++|++. +| .+.||+++++++++++.+....+....+.....++...+      +.+....+..
T Consensus       238 ~~~~~~~~~~i~~~s~sk~~~-~G-~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~  315 (420)
T d1vp4a_         238 IFKIGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELY  315 (420)
T ss_dssp             HHHHHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHH
T ss_pred             ccccccccceeEEeccccccc-cc-cccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccccccchhHHHHh
Confidence                12234577788889875 55 689999999999999988777666555555443333222      2222233444


Q ss_pred             HHHHHHHHHHHH----cCCCeEE
Q 013019          414 NSTALRMAEILE----AHPKVLL  432 (451)
Q Consensus       414 ~~nA~~Lae~L~----~~p~V~~  432 (451)
                      .++...+.+.|+    +.|+++.
T Consensus       316 ~~~~~~~~~~L~~~~~~~~g~~~  338 (420)
T d1vp4a_         316 RRKRTVMLNALEEYFSDIPGVKW  338 (420)
T ss_dssp             HHHHHHHHHHHHHHSTTSTTCEE
T ss_pred             hhhcccchhhhhhhhccCCCcEE
Confidence            444445555554    4456543

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.76  E-value=3.8e-17  Score=163.30  Aligned_cols=214  Identities=20%  Similarity=0.223  Sum_probs=172.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH-ccCCC--eEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC--
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--  283 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al-l~~GD--~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~--  283 (451)
                      .|..+.||+++++++|.+.+++++||++|+.+++.++ +++||  +|+++..+|.++...    +...|.++.++|.+  
T Consensus        30 G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~a----i~~~G~~pv~vDi~~~  105 (371)
T d2fnua1          30 GKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANM----LLESGYTPVFAGIKND  105 (371)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHH----HHHTTCEEEECCBCTT
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhcccCCCCCeeeccccccccccee----eeccCccccccccccc
Confidence            4889999999999999999999999999999999987 44454  899999999887643    34568999998853  


Q ss_pred             ---CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--ccccCCCcEEEECC--c
Q 013019          284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSA--T  356 (451)
Q Consensus       284 ---D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--~pl~~GaDiVv~S~--S  356 (451)
                         +.+++++.++++ |++|++   .+..|...|+++|.++|+++|+++|.|++++.+...  +......|+.+.|+  +
T Consensus       106 ~~~~~~~~~~~~~~~-t~avi~---vh~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~  181 (371)
T d2fnua1         106 GNIDELALEKLINER-TKAIVS---VDYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAI  181 (371)
T ss_dssp             SSBCGGGSGGGCCTT-EEEEEE---ECGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred             ccccchhhhhhccch-hhcccc---ccccccccccccccccccccchhhccchhhccCceeccccCCccccccccccccc
Confidence               456778888774 999986   567899999999999999999999999997665332  22222347888886  8


Q ss_pred             ccCCccccceeEEEEeC-HHHHHHHHHHhHh--------------hC--CCccHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 013019          357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHV--------------LG--GALNPNAAYLIIRGMKTLHLRVQQQNSTALR  419 (451)
Q Consensus       357 K~l~G~gdv~gG~Iv~~-~eli~~lr~~~~~--------------~G--~~ls~~~a~l~lrgL~tl~~Rl~~~~~nA~~  419 (451)
                      |.+...+   ||+++++ +++.++++..+..              +|  ..++.+.|.+++..|+.+...+++..+++..
T Consensus       182 K~l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~~~~~  258 (371)
T d2fnua1         182 KPITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALT  258 (371)
T ss_dssp             SSSCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhhhhhh
Confidence            9988765   7888876 4777888766531              12  3578888999999999999999999999999


Q ss_pred             HHHHHHcCCCeEEE
Q 013019          420 MAEILEAHPKVLLL  433 (451)
Q Consensus       420 Lae~L~~~p~V~~V  433 (451)
                      +.+.|.+.+.+...
T Consensus       259 y~~~l~~~~~~~~~  272 (371)
T d2fnua1         259 YDRIFKDNPYFTPL  272 (371)
T ss_dssp             HHHHHTTCSSEEES
T ss_pred             hccccccccccccc
Confidence            99999998887643

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.76  E-value=2.5e-17  Score=170.20  Aligned_cols=219  Identities=16%  Similarity=0.146  Sum_probs=153.2

Q ss_pred             cCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEE
Q 013019          199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT  278 (451)
Q Consensus       199 ~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~  278 (451)
                      .++..|+  ++|+..+||+++++++|.+++++++||++|+.+++.+++++||+|+.....+ .+...+    ...|....
T Consensus        66 ~GDd~Y~--~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~-~~~~~i----~~~g~~~~  138 (456)
T d1c7ga_          66 IGDEAYA--GSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFT-TTRFHQ----EKNGATFV  138 (456)
T ss_dssp             SCCCCSS--SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCH-HHHHHH----HHTTEEEE
T ss_pred             ccchhcc--CCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHhcCCCCeEecCcchH-HHHHHH----HHcCceee
Confidence            3456787  7999999999999999999999999999999999999999999999866533 332222    11232222


Q ss_pred             Ee---------------CCCCHHHHHHhhcCC---CeEEEEEeCCCCCcc-cc---ccHHHHHHHHHhcCCEEEEecCCC
Q 013019          279 VI---------------DPADMEGLEAALNNN---NVSLFFTESPTNPFL-RC---VDVKLVSDLCHKKGAIVCIDGTFA  336 (451)
Q Consensus       279 ~v---------------d~~D~d~Le~ai~~~---~tklV~lesPsNPtG-~v---~DL~~IaelA~~~g~~lVVD~tfa  336 (451)
                      .+               ...|+++|+++|+++   ++.++++|+|+|+.| .+   .++++|.++|++||+++++|++..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~  218 (456)
T d1c7ga_         139 DIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC  218 (456)
T ss_dssp             ECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             eccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchh
Confidence            11               123799999998642   367999999999976 33   368899999999999999999843


Q ss_pred             C-----------CCccccc-------cCCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHhHhhCC-----Ccc
Q 013019          337 T-----------PLNQKAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGG-----ALN  392 (451)
Q Consensus       337 ~-----------~~~~~pl-------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~~~~G~-----~ls  392 (451)
                      .           .+.....       --.+|++..|++|.++++.   ||++++++ ++.++++......++     .+.
T Consensus       219 ~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~---GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~  295 (456)
T d1c7ga_         219 VENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI---GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLA  295 (456)
T ss_dssp             HHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS---CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCC
T ss_pred             hcchhhhcccccccCCCChhhhccccccccccEEEeccccccccc---eeEEEcCCHHHHHHHHHhccccCCCcccchhh
Confidence            1           1111110       1137999999999998874   88888764 677777765443322     233


Q ss_pred             HHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHcC
Q 013019          393 PNAAYLIIRGMKTL--HLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       393 ~~~a~l~lrgL~tl--~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ...+..+..++...  ...+++..+++++|++.|++.
T Consensus       296 ~~~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~  332 (456)
T d1c7ga_         296 GRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA  332 (456)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            33333333333332  234566677889999999875

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.75  E-value=2.2e-16  Score=160.22  Aligned_cols=185  Identities=18%  Similarity=0.162  Sum_probs=147.2

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHH--ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADME  286 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~al--l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d  286 (451)
                      .+..++||++||+++|.+++++|+||..|+..++.++  ..+||.|+.+...|.+....    ++..+.++..+...|.+
T Consensus        89 ~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g----~~ls~a~~~~f~Hnd~~  164 (396)
T d2bwna1          89 TAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEG----IKRNAGPKRIFRHNDVA  164 (396)
T ss_dssp             BHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHH----HHHSCCCEEEECTTCHH
T ss_pred             chHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchh----hhccccCceEeecchHH
Confidence            3677899999999999999999999999999999887  46889898888888765433    34456777778888888


Q ss_pred             HHHHhhc---CCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc---------ccCCCcEEEEC
Q 013019          287 GLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---------LSLGADLVLHS  354 (451)
Q Consensus       287 ~Le~ai~---~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p---------l~~GaDiVv~S  354 (451)
                      ++++.++   +.+.++|++|...++.|.+.|+++|.++++++|+.+++|++++.++..+-         +....|+++.|
T Consensus       165 ~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gT  244 (396)
T d2bwna1         165 HLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGT  244 (396)
T ss_dssp             HHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEE
T ss_pred             HhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeec
Confidence            8877664   23467999999999999999999999999999999999999876643221         11236999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHH
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIR  401 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lr  401 (451)
                      ++|.+++.    ||++++++++++.++....  .+...++|..+..++.
T Consensus       245 lsKa~g~~----Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~  289 (396)
T d2bwna1         245 LAKAYGVF----GGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQA  289 (396)
T ss_dssp             SSSTTCSC----CEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHH
T ss_pred             cccccccc----ccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHH
Confidence            99999876    6999999999999886543  3455566665544433

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.75  E-value=4.9e-17  Score=160.95  Aligned_cols=219  Identities=15%  Similarity=0.132  Sum_probs=145.6

Q ss_pred             cccCCCchhHHHHHHHHHhhhCC-CcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe
Q 013019          203 EYGRYGNPTTVVVEEKMSALEGA-ESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI  280 (451)
Q Consensus       203 ~Y~R~~npt~~~Lee~LA~l~ga-e~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v  280 (451)
                      ...+|+++...+|++.||+.+|. ++.|++++|+ +++..++..+.  |+.+++..|.|......    ....+..+..+
T Consensus        50 ~~~~Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~--~~~~~v~~p~~~~~~~~----~~~~~~~~~~v  123 (355)
T d1lc5a_          50 CIERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGLK--PRRAMIVTPGFAEYGRA----LAQSGCEIRRW  123 (355)
T ss_dssp             GGGSCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--CSEEEEEESCCTHHHHH----HHHTTCEEEEE
T ss_pred             HhccCCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc--cccccccCCccceeccc----cccccccceee
Confidence            35678888778999999999996 3345556666 66665554443  44455556777653322    22234444443


Q ss_pred             CC------CCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc------ccc
Q 013019          281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK------ALS  345 (451)
Q Consensus       281 d~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~------pl~  345 (451)
                      +.      ...+++++++.++ +++|++++|+||||.+.+   +++|+++|++|++++|+|++|.......      ...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~-~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~  202 (355)
T d1lc5a_         124 SLREADGWQLTDAILEALTPD-LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKD  202 (355)
T ss_dssp             ECCGGGTTCCCTTHHHHCCTT-CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTT
T ss_pred             eeeccCCccceeeeeeccccc-cceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccc
Confidence            32      1234566677664 999999999999999986   6678888899999999999986432111      112


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHH-HHHHHHHHhHhhCCCccHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e-li~~lr~~~~~~G~~ls~~~a~l~lrgL---~tl~~Rl~~~~~nA~~La  421 (451)
                      .+..+++.|+||.++.+| ++.||++++++ +.+.++..+..  ...+......+...+   ..+..++++..++.+++.
T Consensus       203 ~~~~i~~~S~SK~~~l~G-lR~G~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  279 (355)
T d1lc5a_         203 NPHIWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRRQQMP--WSVNALAALAGEVALQDSAWQQATWHWLREEGARFY  279 (355)
T ss_dssp             CTTEEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHHHSCT--TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeccccccccccc-ccccceeccchhhhHHHHhhcCC--ccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence            234689999999998666 57899888765 44555544332  234555555444444   345566777778888899


Q ss_pred             HHHHcCCCeE
Q 013019          422 EILEAHPKVL  431 (451)
Q Consensus       422 e~L~~~p~V~  431 (451)
                      +.|.+.+++.
T Consensus       280 ~~l~~~~~~~  289 (355)
T d1lc5a_         280 QALCQLPLLT  289 (355)
T ss_dssp             HHHHTSTTEE
T ss_pred             HHHhhcCCcE
Confidence            9999988764

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.2e-16  Score=162.36  Aligned_cols=212  Identities=19%  Similarity=0.182  Sum_probs=163.4

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      .+..++||++||+++|.+.+++++||+.|+..++.++.+++|.|++....|.+.+..+    ...+.++..+...|.+++
T Consensus        89 ~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~----~~~~a~~~~~~~~d~~~l  164 (401)
T d1fc4a_          89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGV----RLCKAKRYRYANNDMQEL  164 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHH----HTSCSEEEEECTTCHHHH
T ss_pred             cHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccc----cccCceEEEEcCCChHHH
Confidence            4667889999999999999999999999999999999999999999999998866433    334556666777777777


Q ss_pred             HHhhcC-----CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcccc---------ccCCCcEEEEC
Q 013019          289 EAALNN-----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA---------LSLGADLVLHS  354 (451)
Q Consensus       289 e~ai~~-----~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~p---------l~~GaDiVv~S  354 (451)
                      ++.++.     .+..+|++|...+..|.+.||++|.++|+++|+++++|++++.+.....         +.-.+|+++.|
T Consensus       165 e~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~t  244 (401)
T d1fc4a_         165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT  244 (401)
T ss_dssp             HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred             HHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEee
Confidence            665531     2357999999999999999999999999999999999999765432210         11137899999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhH--hhCCCccHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHcC
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~--~~G~~ls~~~a~l~lrgL~t---l~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      ++|.++|..   ||++.+++++++.++....  .++..++|..+..++..++.   .+.+.++..++...+.+.|.+.
T Consensus       245 l~Ka~gg~~---Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~  319 (401)
T d1fc4a_         245 LGKALGGAS---GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA  319 (401)
T ss_dssp             SSSTTCSSS---CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccCC---cccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhccc
Confidence            999998764   8999999999998875432  35666777665554444443   3455677777777777777654

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.6e-16  Score=159.12  Aligned_cols=208  Identities=16%  Similarity=0.136  Sum_probs=146.4

Q ss_pred             HHHHHHHHh----hhCC----Cc-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--
Q 013019          213 VVVEEKMSA----LEGA----ES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (451)
Q Consensus       213 ~~Lee~LA~----l~ga----e~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--  281 (451)
                      ..|++.||+    .+|.    ++ .++++++++++..++++++++||.|++++|.|......+    ...|..+..+.  
T Consensus        66 ~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~~~~~  141 (382)
T d1u08a_          66 QALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAI----ALSGGIVKRMALQ  141 (382)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhh----hhccccceecccc
Confidence            345555555    4452    33 455555559999999999999999999999999866433    34454444332  


Q ss_pred             ----CCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCcc-----ccc----c
Q 013019          282 ----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL----S  345 (451)
Q Consensus       282 ----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~-----~pl----~  345 (451)
                          ..|++++++++.++ +++|++++|+||||.+.+   +++|.++|.+++++++.|+.|......     .+.    .
T Consensus       142 ~~~~~~d~~~l~~~~~~~-~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~  220 (382)
T d1u08a_         142 PPHFRVDWQEFAALLSER-TRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL  220 (382)
T ss_dssp             TTTCCCCHHHHHHHCCTT-EEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHH
T ss_pred             cccccCCHHHHhhhhccC-ccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccc
Confidence                23789999988875 999999999999999986   567778888899999999987543211     111    1


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM----KTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL----~tl~~Rl~~~~~nA~~La  421 (451)
                      ....+++.|+||.++.+| .+.||+++++++++++.........+.+......+...+    +.+....+...++...+.
T Consensus       221 ~~~~i~~~s~SK~~~~pG-~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~  299 (382)
T d1u08a_         221 RERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILV  299 (382)
T ss_dssp             HTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHH
T ss_pred             cCcEEEEeeccccccCCc-ccchhhhccchhHHHHHhhhcccccccccccccccccccccchHHHHHHHHHHHhhhhhhh
Confidence            123589999999998776 578999999999999888777666666655544433333    334444455556666777


Q ss_pred             HHHHc
Q 013019          422 EILEA  426 (451)
Q Consensus       422 e~L~~  426 (451)
                      +.+..
T Consensus       300 ~~~~~  304 (382)
T d1u08a_         300 NALNE  304 (382)
T ss_dssp             HHTTS
T ss_pred             hhhcc
Confidence            76654

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.74  E-value=1e-16  Score=162.48  Aligned_cols=175  Identities=17%  Similarity=0.213  Sum_probs=139.8

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCC--c-EEEeCCHHHHHHHHHHH----HccCCCeEEEcCCCCcchHHHHHHhhhcCC
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae--~-~vv~sSG~aAi~~al~a----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      +.+++......++.++.+++++|++  + .++++++++++..++..    -+++||+|++.+..|.+....+....++.|
T Consensus        58 ~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g  137 (408)
T d1t3ia_          58 HQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG  137 (408)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccC
Confidence            3344333455667889999999972  4 44455666787776654    367899999999999998777777777889


Q ss_pred             cEEEEeCC-----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCC
Q 013019          275 ITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGA  348 (451)
Q Consensus       275 i~v~~vd~-----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~Ga  348 (451)
                      +++.+++.     .+.+.++++++++ |++|.+...+|.+|.+.|+++|.++|+++|+++++|.+++.+. ..+.-++|+
T Consensus       138 ~~v~~~~~~~~~~~~~~~l~~~~~~~-t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~  216 (408)
T d1t3ia_         138 AVLKFVQLDEQESFDLEHFKTLLSEK-TKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDC  216 (408)
T ss_dssp             CEEEEECBCTTSSBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTC
T ss_pred             ceEeeeeccccccccHHHhhhccCCC-ceEEEEecccccccccCcHHHHhhhhhccCceeeeccceecccccccccccCC
Confidence            99888863     3689999999875 9999999999999999999999999999999999999987653 334446799


Q ss_pred             cEEEECCcccCCccccceeEEEEeCHHHHHHH
Q 013019          349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQI  380 (451)
Q Consensus       349 DiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~l  380 (451)
                      |+++.|.+|+++++|   .|+++.+++...++
T Consensus       217 D~~~~s~hK~~gp~G---~g~l~v~~~~~~~~  245 (408)
T d1t3ia_         217 DWLVASGHKMCAPTG---IGFLYGKEEILEAM  245 (408)
T ss_dssp             SEEEEEGGGTTSCTT---CEEEEECHHHHHHS
T ss_pred             ceEEeccccccCCCC---ccccccchhhhhcC
Confidence            999999999987776   78888898776543

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.74  E-value=7.2e-17  Score=162.80  Aligned_cols=188  Identities=10%  Similarity=0.067  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-------CCHHHHHHhhcC--CCeEEEEEeCCC
Q 013019          236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPT  306 (451)
Q Consensus       236 aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-------~D~d~Le~ai~~--~~tklV~lesPs  306 (451)
                      .++..++.+++.+||+|++++|.|......    +...|.++..++.       .+++.+.+.+..  ++++++++++|+
T Consensus       110 ~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~  185 (401)
T d7aata_         110 RVGANFLQRFFKFSRDVYLPKPSWGNHTPI----FRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAH  185 (401)
T ss_dssp             HHHHHHHHHHCTTCCEEEEEESCCTTHHHH----HHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSC
T ss_pred             HHHHHhhHhhcCCCceEEEecCCCcchhhH----HHHcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCC
Confidence            467777888999999999999999987643    4456777766542       257777666642  358999999999


Q ss_pred             CCcccccc---HHHHHHHHHhcCCEEEEecCCCCCCccc----c------ccC-CCcEEEECCcccCCccccceeEEEEe
Q 013019          307 NPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A------LSL-GADLVLHSATKFIGGHNDVLAGSISG  372 (451)
Q Consensus       307 NPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~~~~----p------l~~-GaDiVv~S~SK~l~G~gdv~gG~Iv~  372 (451)
                      ||||.+++   +++|+++|++|++++|.|++|.......    +      ... .--+++.|++|.++..| .+.|++++
T Consensus       186 NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G-~RiG~~~~  264 (401)
T d7aata_         186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYG-ERAGAFTV  264 (401)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGG-GCEEEEEE
T ss_pred             CCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeec-cccceeec
Confidence            99999985   6789999999999999999987643211    1      011 22478889999998877 46788887


Q ss_pred             CHHHHHHHHHHh-------HhhCCCccHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          373 SGKLVTQIRNLH-------HVLGGALNPNAAYLIIRG----------MKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       373 ~~eli~~lr~~~-------~~~G~~ls~~~a~l~lrg----------L~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      +.++++.+.+..       .....+.+...+..+...          .+.+....++..++.+.+.+.|+++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  337 (401)
T d7aata_         265 ICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG  337 (401)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            765555443322       111222333333322221          12233344556667788888888764

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.72  E-value=7.8e-17  Score=165.10  Aligned_cols=215  Identities=13%  Similarity=0.166  Sum_probs=144.7

Q ss_pred             ccccCCCchhHHHHHHHHHhhh---CC----CcEEEeCCHH-HHHHHHHHHH--------ccCCCeEEEcCCCCcchHHH
Q 013019          202 FEYGRYGNPTTVVVEEKMSALE---GA----ESTVIMASGM-SASTVMLLAL--------VPAGGHIVTTTDCYRKTRIF  265 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~---ga----e~~vv~sSG~-aAi~~al~al--------l~~GD~VIv~~~~Y~~t~~~  265 (451)
                      |.|....+....+|++.|++++   |.    +.-|++++|+ ++|.+++.+|        +.|||+||++.|.|..+...
T Consensus        92 y~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~  171 (425)
T d2hoxa1          92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ  171 (425)
T ss_dssp             SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH
T ss_pred             eecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHH
Confidence            4444444455678999999886   31    3458888887 9999999999        57899999999999875543


Q ss_pred             HHHhhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc-cc
Q 013019          266 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK-AL  344 (451)
Q Consensus       266 l~~~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~-pl  344 (451)
                      . .++..-...+.    .|.+.++++++++ ++++++++||||||.+..       +-.+++.+|.|++|..+.... +.
T Consensus       172 ~-~~~~~~~~~~~----~D~~~~~~~~~~~-~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~  238 (425)
T d2hoxa1         172 T-KYFDKKGYVWA----GNAANYVNVSNPE-QYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKY  238 (425)
T ss_dssp             H-HHSCBTTEEEE----EEGGGGTTCSCGG-GEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCS
T ss_pred             H-HHcCCCCCccC----CCHHHHHhhCCCC-ceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhh
Confidence            3 23222222222    2567777777774 999999999999998742       223689999999986542211 11


Q ss_pred             cCCCcEEEECCcccCCccccceeEEEE-eCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHH---------------HHH
Q 013019          345 SLGADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---------------LHL  408 (451)
Q Consensus       345 ~~GaDiVv~S~SK~l~G~gdv~gG~Iv-~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~t---------------l~~  408 (451)
                      ...-+|++.|+||.++.+| .+.||++ .++++.+++...+.....+++...+..++..|+.               +..
T Consensus       239 ~~~~~Ivl~S~SK~fglaG-lRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~  317 (425)
T d2hoxa1         239 KADEDILLFTMSKFTGHSG-SRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF  317 (425)
T ss_dssp             CBCCSEEEEEHHHHTSCGG-GCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHH
T ss_pred             hcCCeEEEEeCHHhccCcc-hheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            2235799999999999877 5677754 5567778888777665555665555444444432               222


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCe
Q 013019          409 RVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       409 Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      ..++..++...+.+.|.+.+.+
T Consensus       318 ~~~~l~~r~~~l~~~L~~~~~~  339 (425)
T d2hoxa1         318 GFKKLRERWVNITALLDQSDRF  339 (425)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCc
Confidence            2344556677788888876644

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.71  E-value=9.3e-17  Score=164.76  Aligned_cols=219  Identities=11%  Similarity=-0.018  Sum_probs=141.0

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEe--CC--
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI--DP--  282 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~v--d~--  282 (451)
                      +.....++|+.+|+++|+++++++++|+ +++.+++.+++++||+||+++.+|.+.+.... .+...+..+...  +.  
T Consensus        64 ~~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-~l~~~~~~~~~~~~~~~g  142 (462)
T d1c4ka2          64 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-AMAGGRPVYLQTNRNPYG  142 (462)
T ss_dssp             TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-TTTCCEEEEECEEECTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-HHhcCCceeeeccccccc
Confidence            4566888999999999999999999997 56777788999999999999999988764331 222223332222  11  


Q ss_pred             ---------CCHHH---------HHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCccc--
Q 013019          283 ---------ADMEG---------LEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK--  342 (451)
Q Consensus       283 ---------~D~d~---------Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~~--  342 (451)
                               .+.+.         +++++..+ ++++++.+.+|..|.+.|+++|+++||++|++|++|++++......  
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~  221 (462)
T d1c4ka2         143 FIGGIYDSDFDEKKIRELAAKVDPERAKWKR-PFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPM  221 (462)
T ss_dssp             CEEEECGGGSCHHHHHHHTTTSSHHHHTCSC-CBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGG
T ss_pred             ccCCCChHHhhHHHHHhhhhhhcHHhhhccC-CceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCc
Confidence                     12222         33344443 5556666677889999999999999999999999999976542211  


Q ss_pred             -c---c--------cCCCcEEEECCcccCCccccceeEEEEeCHHHH---------HHHHHHhHhhCCC-ccH-HH----
Q 013019          343 -A---L--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLV---------TQIRNLHHVLGGA-LNP-NA----  395 (451)
Q Consensus       343 -p---l--------~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli---------~~lr~~~~~~G~~-ls~-~~----  395 (451)
                       +   .        ..++|++++|+||.+++.+  .++++..+.+.+         +.++.....+... .+. ..    
T Consensus       222 ~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~  299 (462)
T d1c4ka2         222 MRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD  299 (462)
T ss_dssp             GGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             CCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHH
Confidence             1   1        2245999999999999876  344444444332         2333332222211 111 11    


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          396 AYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       396 a~l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                      +.......+.....+++..++++++.+.|.+.+..
T Consensus       300 ~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~  334 (462)
T d1c4ka2         300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSM  334 (462)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            11111111223344567778899999999887654

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.67  E-value=1e-15  Score=155.49  Aligned_cols=206  Identities=15%  Similarity=0.139  Sum_probs=145.8

Q ss_pred             HHHHHhhhCCCc-EEEeC-CHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--------CC
Q 013019          216 EEKMSALEGAES-TVIMA-SGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID--------PA  283 (451)
Q Consensus       216 ee~LA~l~gae~-~vv~s-SG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--------~~  283 (451)
                      ...+.++.|.+. +.++. +|.+++.+++++..  .++++|++++..|.+....+    ...|+....++        ..
T Consensus       119 ~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~----~~~g~~~~~v~~~~~~~~~~~  194 (434)
T d2z67a1         119 LESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAV----SFVGMNMRLVETVLDGDRVYV  194 (434)
T ss_dssp             HHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH----HHTTCEEEEECCEEETTEEEC
T ss_pred             HHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHH----HHhCCcceEEEeecCCCccCC
Confidence            345667777643 44444 44466667776653  37899999999998766443    44566655554        25


Q ss_pred             CHHHHHHhhcC----CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC------ccccccCCCcEEEE
Q 013019          284 DMEGLEAALNN----NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL------NQKALSLGADLVLH  353 (451)
Q Consensus       284 D~d~Le~ai~~----~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~------~~~pl~~GaDiVv~  353 (451)
                      |+++|+++|++    +++.+|++.+|++++|.+.|+++|+++|+++|+++++|++++...      ...+...|+|+++.
T Consensus       195 d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~  274 (434)
T d2z67a1         195 PVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVS  274 (434)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEE
T ss_pred             CHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCcceEEE
Confidence            89999999964    247899999999999999999999999999999999999987643      23456789999999


Q ss_pred             CCcccCCccccceeEEEE-eCHHHHHHHHHHhHhhCCCccHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          354 SATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLII--RGMKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       354 S~SK~l~G~gdv~gG~Iv-~~~eli~~lr~~~~~~G~~ls~~~a~l~l--rgL~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      |++|+++++.  .+|++. .++++++++...............+|..+  .+.+.+....++..++++.+.+.|++.
T Consensus       275 s~hK~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l  349 (434)
T d2z67a1         275 SSDKNLLTPI--GGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDL  349 (434)
T ss_dssp             EHHHHHCCCS--SCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccccccCC--CccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence            9999988764  244444 45667777665443333333334444333  344556666777788888888888763

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=2.3e-15  Score=144.10  Aligned_cols=244  Identities=17%  Similarity=0.188  Sum_probs=154.5

Q ss_pred             ccCCCccCCHHHHHHHHhcccCCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcCCC
Q 013019          179 NTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDC  258 (451)
Q Consensus       179 ~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~~~  258 (451)
                      +|.|.+-|+++.+++..+...+...|+  ++|...+||++||+++|.+++++++||++|+.+++.++.++||.+++..+.
T Consensus         5 ~~~~~t~p~p~v~~A~~~a~~g~~~yg--~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~   82 (343)
T d1m6sa_           5 RSDTVTKPTEEMRKAMAQAEVGDDVYG--EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADS   82 (343)
T ss_dssp             SCGGGCCCCHHHHHHHHTCCCCCGGGT--CCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTC
T ss_pred             ccccCCCCCHHHHHHHHhhhcCCcccC--CCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHHhccCCceeccccc
Confidence            455555677766666555443334454  679999999999999999999999999999999999999999999999988


Q ss_pred             CcchHHHHHHhhhcCCcEEEEeC----CCCHHHHHHhhcCC-----CeEEE-EEeCCCCCcccccc---HHHHHHHHHhc
Q 013019          259 YRKTRIFIETVLPKMGITATVID----PADMEGLEAALNNN-----NVSLF-FTESPTNPFLRCVD---VKLVSDLCHKK  325 (451)
Q Consensus       259 Y~~t~~~l~~~l~~~Gi~v~~vd----~~D~d~Le~ai~~~-----~tklV-~lesPsNPtG~v~D---L~~IaelA~~~  325 (451)
                      |..+..... .....+..+..++    ..|++.+++.+...     ++..+ +...++|+.|.+.+   +++|.++|+++
T Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  161 (343)
T d1m6sa_          83 HIFWYEVGA-MAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEH  161 (343)
T ss_dssp             HHHHSSTTH-HHHHTCCEEEEECEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH
T ss_pred             cceeeeccc-ccccccceeeccccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhc
Confidence            765332111 1112233333332    23788888888642     24444 44556677777654   66788888999


Q ss_pred             CCEEEEecCCCCCCc------cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHH--HH
Q 013019          326 GAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNA--AY  397 (451)
Q Consensus       326 g~~lVVD~tfa~~~~------~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~--a~  397 (451)
                      |+++++|+++.....      ........+.++.+.+|..+|..   +|++.+..+++......+...+.......  +.
T Consensus       162 g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  238 (343)
T d1m6sa_         162 GINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV---GSVVVGDRDFIERARKARKMLGGGMRQAGVLAA  238 (343)
T ss_dssp             TCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHH
T ss_pred             CeEEEeccccccccccccccchhhhccccccccccccccccccc---cccccccHHHHhhhHhhCcccccccchhHHHHH
Confidence            999999999754211      11111234566666666666553   78888888888777766655544332221  22


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          398 LIIRGMKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       398 l~lrgL~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      ...........+.++..++..++.+.+.+.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (343)
T d1m6sa_         239 AGIIALTKMVDRLKEDHENARFLALKLKEIG  269 (343)
T ss_dssp             HHHHHHHHSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhhHHHHhc
Confidence            2122222222334445556666666665543

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.66  E-value=4e-15  Score=150.31  Aligned_cols=220  Identities=14%  Similarity=0.062  Sum_probs=131.9

Q ss_pred             CccccCCCchhHHHHHHHHHhhhC--------CCc-EEEeC-CHHHHHHHHHH-------HHccCCCeEEEcCCCCcchH
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEG--------AES-TVIMA-SGMSASTVMLL-------ALVPAGGHIVTTTDCYRKTR  263 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~g--------ae~-~vv~s-SG~aAi~~al~-------all~~GD~VIv~~~~Y~~t~  263 (451)
                      .+.|+-  .....+|++++++++.        .+. .++.+ +++.++..+..       +++.+||+|++++|.|+...
T Consensus        67 ~~~Y~p--~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~  144 (412)
T d1ajsa_          67 NHEYLP--ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN  144 (412)
T ss_dssp             CCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhH
Confidence            345653  3334567777777652        122 33333 34344433332       23789999999999998866


Q ss_pred             HHHHHhhhcCCcE-EEEe---C----CCCHHHHHHhh---cCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEE
Q 013019          264 IFIETVLPKMGIT-ATVI---D----PADMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIV  329 (451)
Q Consensus       264 ~~l~~~l~~~Gi~-v~~v---d----~~D~d~Le~ai---~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~l  329 (451)
                      ..++    ..|.+ +.+.   +    ..|.+.+++.+   .+ +++++++++|+||||.+++   +++|+++|++||+++
T Consensus       145 ~~~~----~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~i  219 (412)
T d1ajsa_         145 GVFT----TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPE-FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFP  219 (412)
T ss_dssp             HHHH----HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCT-TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred             HHHH----HcCCeEEEeecccccccccccHHHHHHHHHhccC-CcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEE
Confidence            5443    34443 2221   1    12566555543   34 4899999999999999986   788999999999999


Q ss_pred             EEecCCCCCCccc----c-------ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-------hhCCCc
Q 013019          330 CIDGTFATPLNQK----A-------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGAL  391 (451)
Q Consensus       330 VVD~tfa~~~~~~----p-------l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-------~~G~~l  391 (451)
                      |.|++|.......    .       ......+++.|++|.++.+|. +.|++++..+.++.+.....       ......
T Consensus       220 i~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (412)
T d1ajsa_         220 FFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNP  298 (412)
T ss_dssp             EEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             EecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCC-CccccccchhHHHHHHHHHHHHHHHhhcccccc
Confidence            9999987643211    0       011235888899999998874 56777776544443332221       111222


Q ss_pred             cHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          392 NPNAAYLIIR----------GMKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       392 s~~~a~l~lr----------gL~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      +...+..+..          ..+.+....++..++.+.+.+.|+++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~  345 (412)
T d1ajsa_         299 PAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             CSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2232222211          122333445556677778888888764

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.66  E-value=1.9e-15  Score=152.08  Aligned_cols=215  Identities=18%  Similarity=0.231  Sum_probs=156.6

Q ss_pred             CchhHHHHH----HHHHhhhCCCcEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHh-hhcCCcEEEE--
Q 013019          208 GNPTTVVVE----EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATV--  279 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~-l~~~Gi~v~~--  279 (451)
                      |+...+.+|    ++..++++++.+-+ .-||+.|+++++.+|++|||+|+..+...|+....-... ......++..  
T Consensus        63 G~~~id~iE~la~~ra~~lF~a~~anVqp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~  142 (405)
T d1kl1a_          63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYG  142 (405)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEEC
T ss_pred             CchhHHHHHHHHHHHHHHHhCCCcceeeccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEec
Confidence            566777776    55577889987666 469999999999999999999999998888743210000 0001123332  


Q ss_pred             eC----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCC-----CCCCccccccCCCcE
Q 013019          280 ID----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQKALSLGADL  350 (451)
Q Consensus       280 vd----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tf-----a~~~~~~pl~~GaDi  350 (451)
                      +|    ..|.|++++.+++.++++|++..-.  ..+..|++++.++|++.|++|++|.++     +.+..++|++. +|+
T Consensus       143 ~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aDv  219 (405)
T d1kl1a_         143 VDPETHVIDYDDVREKARLHRPKLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AHF  219 (405)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CSE
T ss_pred             cchhcccccHHHHHHHHHhhCcceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hhh
Confidence            22    2489999998887679999985433  667889999999999999999999995     34577889975 899


Q ss_pred             EEECCcccCCccccceeEEEEeCHHHHHHHHHHhHh--hCCCccHHHHHHH---HHhh-HHHHHHHHHHHHHHHHHHHHH
Q 013019          351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLI---IRGM-KTLHLRVQQQNSTALRMAEIL  424 (451)
Q Consensus       351 Vv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--~G~~ls~~~a~l~---lrgL-~tl~~Rl~~~~~nA~~Lae~L  424 (451)
                      |..|++|.|.|+.   ||+|.+++++.+++......  .|+......|.++   ...+ .....-.++..+||+.|++.|
T Consensus       220 vt~tThKtlrGPr---gg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L  296 (405)
T d1kl1a_         220 VTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL  296 (405)
T ss_dssp             EEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccccccCCC---CceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999995   99999999988888764421  2222222222221   2222 344566788899999999999


Q ss_pred             HcCC
Q 013019          425 EAHP  428 (451)
Q Consensus       425 ~~~p  428 (451)
                      .++.
T Consensus       297 ~~~G  300 (405)
T d1kl1a_         297 QNEG  300 (405)
T ss_dssp             HHTT
T ss_pred             hcCC
Confidence            9874

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.64  E-value=2.1e-14  Score=145.29  Aligned_cols=220  Identities=12%  Similarity=0.076  Sum_probs=135.1

Q ss_pred             CccccCCCchhHHHHHHHHHhhhC--------CCcEEE-eC-CHHHHHHH--HHHHHccCCCeEEEcCCCCcchHHHHHH
Q 013019          201 SFEYGRYGNPTTVVVEEKMSALEG--------AESTVI-MA-SGMSASTV--MLLALVPAGGHIVTTTDCYRKTRIFIET  268 (451)
Q Consensus       201 ~~~Y~R~~npt~~~Lee~LA~l~g--------ae~~vv-~s-SG~aAi~~--al~all~~GD~VIv~~~~Y~~t~~~l~~  268 (451)
                      .+.|+  +.....+|++.+++++.        .+..++ .+ +|..++..  .+..++.+||.|++++|.|......   
T Consensus        66 ~~~Y~--p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~---  140 (412)
T d1yaaa_          66 NHEYL--GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAI---  140 (412)
T ss_dssp             CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHH---
T ss_pred             CCCCC--CCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHH---
Confidence            34565  23345567777777542        122222 22 33333333  3445678999999999999986543   


Q ss_pred             hhhcCCcEEEEeCC-------CCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCC
Q 013019          269 VLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA  336 (451)
Q Consensus       269 ~l~~~Gi~v~~vd~-------~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa  336 (451)
                       +...|.++..++.       .+.+.+++.+..  ++++++++++|+||||.+++   +++|+++|+++++++|.|++|.
T Consensus       141 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~  219 (412)
T d1yaaa_         141 -FENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ  219 (412)
T ss_dssp             -HHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             -HHHcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceee
Confidence             3455666555432       256666655532  24789999999999999985   7889999999999999999987


Q ss_pred             CCCccc----c----------ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHH-----------HHhHhhCCCc
Q 013019          337 TPLNQK----A----------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIR-----------NLHHVLGGAL  391 (451)
Q Consensus       337 ~~~~~~----p----------l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr-----------~~~~~~G~~l  391 (451)
                      ......    +          ......+++.|+||.++.+| .+.|+++++++.++.+.           ........+.
T Consensus       220 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (412)
T d1yaaa_         220 GFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNP  298 (412)
T ss_dssp             TTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSC
T ss_pred             ecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCc-CceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence            543221    0          01123488999999999877 46788887654322111           1111222334


Q ss_pred             cHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHcC
Q 013019          392 NPNAAYLIIRG----------MKTLHLRVQQQNSTALRMAEILEAH  427 (451)
Q Consensus       392 s~~~a~l~lrg----------L~tl~~Rl~~~~~nA~~Lae~L~~~  427 (451)
                      +...+..+...          .+.+....++..++...+.+.|+++
T Consensus       299 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  344 (412)
T d1yaaa_         299 PAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL  344 (412)
T ss_dssp             CHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444433322          2233444455666777788888765

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=6.9e-15  Score=147.64  Aligned_cols=219  Identities=13%  Similarity=0.038  Sum_probs=134.6

Q ss_pred             ccccCCCchhHHHHHHHHHhhhC--------CCc-EE-EeCCHHHH--HHHHHHHHccCCCeEEEcCCCCcchHHHHHHh
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEG--------AES-TV-IMASGMSA--STVMLLALVPAGGHIVTTTDCYRKTRIFIETV  269 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~g--------ae~-~v-v~sSG~aA--i~~al~all~~GD~VIv~~~~Y~~t~~~l~~~  269 (451)
                      +.|+  +.....+|++.+++++.        .+. .. .+++|..+  +...++..+.+||+|++++|.|......    
T Consensus        63 ~~Y~--p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~----  136 (396)
T d2q7wa1          63 KNYL--GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSV----  136 (396)
T ss_dssp             CCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHH----
T ss_pred             CCCC--CCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHH----
Confidence            3454  23335567777777542        122 22 33344333  4444555678999999999999986643    


Q ss_pred             hhcCCcEEEEeCCC-------CHHHHHHhh---cCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCC
Q 013019          270 LPKMGITATVIDPA-------DMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA  336 (451)
Q Consensus       270 l~~~Gi~v~~vd~~-------D~d~Le~ai---~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa  336 (451)
                      +...|.++..++..       +.+.+++..   .+ +++++++++|+||||.+.+   +++|+++|++|++++|.|++|.
T Consensus       137 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~  215 (396)
T d2q7wa1         137 FNSAGLEVREYAYYDAENHTLDFDALINSLNEAQA-GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ  215 (396)
T ss_dssp             HHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCT-TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT
T ss_pred             HHHcCCeeEecccccccccccccchHHHHHHHhcc-CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEecccc
Confidence            34567776655421       344444433   33 4889999999999999986   6789999999999999999997


Q ss_pred             CCCccc-----cc-----cCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-------hhCCCccHHHHHHH
Q 013019          337 TPLNQK-----AL-----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLI  399 (451)
Q Consensus       337 ~~~~~~-----pl-----~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-------~~G~~ls~~~a~l~  399 (451)
                      ......     ..     .....+++.|++|.++.+| .+.|++++..+.++.+.....       ....+.+...+.++
T Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~  294 (396)
T d2q7wa1         216 GFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVV  294 (396)
T ss_dssp             TSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             ccccCCccCchHhhhhhhhcccccccccccccccccC-CCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHH
Confidence            643211     00     1123578889999998877 467888776655544433221       12233334433332


Q ss_pred             HHh----------hHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          400 IRG----------MKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       400 lrg----------L~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      ...          .+.+....++..++...+.+.|+++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  333 (396)
T d2q7wa1         295 ATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            211          22333334555667778888888764

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=9.4e-15  Score=147.60  Aligned_cols=215  Identities=18%  Similarity=0.193  Sum_probs=154.4

Q ss_pred             CchhHHHHH----HHHHhhhCCCcEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHh-hhcCCcEEEEe-
Q 013019          208 GNPTTVVVE----EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVI-  280 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~-l~~~Gi~v~~v-  280 (451)
                      |+...+.+|    ++..+++|++.+-+ ..||+.|+.+++.++++|||+|+..+..+|+....-... ......+.... 
T Consensus        66 G~~~iD~iE~la~~ra~~lF~a~~anVqp~SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~  145 (416)
T d1dfoa_          66 GCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYG  145 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEEC
T ss_pred             CChhHHHHHHHHHHHHHHHhCCCcceeecccCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecc
Confidence            566666665    45567889877655 679999999999999999999999999998843211000 00001222222 


Q ss_pred             -C---CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCC-----CCCccccccCCCcEE
Q 013019          281 -D---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-----TPLNQKALSLGADLV  351 (451)
Q Consensus       281 -d---~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa-----~~~~~~pl~~GaDiV  351 (451)
                       |   ..|.|++++.+++.++|+|++..  +-..+..|++++.++|++.|+++++|.++-     .+..++|++. +|+|
T Consensus       146 ~d~~~~IDyd~l~~~a~~~kPklIi~G~--S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvv  222 (416)
T d1dfoa_         146 IDATGHIDYADLEKQAKEHKPKMIIGGF--SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVV  222 (416)
T ss_dssp             BCSSSSBCHHHHHHHHHHHCCSEEEEEC--SSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEE
T ss_pred             cCCccCccHHHHHHHHHHhccceEEecc--cccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccc-ccee
Confidence             2   34899999888766789999864  346788999999999999999999999964     3567889987 7999


Q ss_pred             EECCcccCCccccceeEEEEeC---HHHHHHHHHHhH--hhCCCccHHHHH---HHHHhh-HHHHHHHHHHHHHHHHHHH
Q 013019          352 LHSATKFIGGHNDVLAGSISGS---GKLVTQIRNLHH--VLGGALNPNAAY---LIIRGM-KTLHLRVQQQNSTALRMAE  422 (451)
Q Consensus       352 v~S~SK~l~G~gdv~gG~Iv~~---~eli~~lr~~~~--~~G~~ls~~~a~---l~lrgL-~tl~~Rl~~~~~nA~~Lae  422 (451)
                      ..|+||.|.|+.   ||+|..+   +++.+++.....  ..|+......+.   .+...+ ..+..-.++..+|++.|++
T Consensus       223 t~tThKtlrGPr---ggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~  299 (416)
T d1dfoa_         223 TTTTHKTLAGPR---GGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVE  299 (416)
T ss_dssp             EEESSSTTCCCS---CEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             eeehhhcccCCC---ceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999995   9999986   577777765432  223322222222   122222 2345667888999999999


Q ss_pred             HHHcCC
Q 013019          423 ILEAHP  428 (451)
Q Consensus       423 ~L~~~p  428 (451)
                      .|.++.
T Consensus       300 ~L~~~G  305 (416)
T d1dfoa_         300 VFLERG  305 (416)
T ss_dssp             HHHHTT
T ss_pred             HHHhCC
Confidence            999884

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=3.2e-15  Score=148.44  Aligned_cols=161  Identities=17%  Similarity=0.135  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHH----HccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLA----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~a----ll~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      ...++.++++++++|+  ++.++++++++++..++.+    ..++|+.|++....|+...... ..++..|+++++++. 
T Consensus        44 ~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~~~~~g~~v~~vp~~  122 (376)
T d1eg5a_          44 LHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETM-KYLSMKGFKVKYVPVD  122 (376)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHH-HHHHHTTCEEEECCBC
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHH-HHHHhcCCEEEEEcCC
Confidence            3345668899999997  4667777888888887753    3567788888777776655444 456777999998863 


Q ss_pred             ----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCCC-ccccccCCCcEEEECC
Q 013019          283 ----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPL-NQKALSLGADLVLHSA  355 (451)
Q Consensus       283 ----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~  355 (451)
                          .|+++++++++++ |++|++..++|+||...|++++.++++.+  |+++++|.++..+. ..+.-++++|+++.|+
T Consensus       123 ~~~~id~~~l~~~i~~~-t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~  201 (376)
T d1eg5a_         123 SRGVVKLEELEKLVDED-TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSA  201 (376)
T ss_dssp             TTSCBCHHHHHHHCCTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEG
T ss_pred             CCCeECHHHHHHhcCCC-ceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeeccccccccccccCccceeccc
Confidence                3799999999885 99999999999999999999999998654  99999999976653 3344467899999999


Q ss_pred             cccCCccccceeEEEEeCHH
Q 013019          356 TKFIGGHNDVLAGSISGSGK  375 (451)
Q Consensus       356 SK~l~G~gdv~gG~Iv~~~e  375 (451)
                      +||++++|   .|++..+++
T Consensus       202 ~K~~gp~G---~~~l~~~~~  218 (376)
T d1eg5a_         202 HKFHGPKG---VGITYIRKG  218 (376)
T ss_dssp             GGGTSCTT---CEEEEECTT
T ss_pred             ceeecCCC---ceeEEeccC
Confidence            99988776   566666553

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=9.5e-15  Score=146.21  Aligned_cols=170  Identities=15%  Similarity=0.151  Sum_probs=111.9

Q ss_pred             ccccCCCchhHHHHHHHHHhhh----CC---CcEEEeCCHHH--HHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhc
Q 013019          202 FEYGRYGNPTTVVVEEKMSALE----GA---ESTVIMASGMS--ASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK  272 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~----ga---e~~vv~sSG~a--Ai~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~  272 (451)
                      +.|+-.  ....+|++++++++    +.   ...+++++|+.  ++.+.+..+..+||.|++++|.|+.....+    +.
T Consensus        63 ~~Y~p~--~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~----~~  136 (394)
T d2ay1a_          63 KTYAGL--SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM----NF  136 (394)
T ss_dssp             CCCCCS--SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HH
T ss_pred             CCCCCC--CCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHH----HH
Confidence            456643  23345666666653    32   34555666654  455666677899999999999998765433    34


Q ss_pred             CCcEEEEeCC-------CCHHHHHHhh---cCCCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCCCCCC
Q 013019          273 MGITATVIDP-------ADMEGLEAAL---NNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPL  339 (451)
Q Consensus       273 ~Gi~v~~vd~-------~D~d~Le~ai---~~~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tfa~~~  339 (451)
                      .|.++..++.       .+.+++++..   .+ +++++++++|+||||.+++   +++|+++|+++++++|.|++|....
T Consensus       137 ~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~  215 (394)
T d2ay1a_         137 MGLPVQTYRYFDAETRGVDFEGMKADLAAAKK-GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFG  215 (394)
T ss_dssp             HTCCEEEEECEETTTTEECHHHHHHHHHTCCT-TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSS
T ss_pred             cCCEEEEecccchhcccccchhHHHHHhhccc-CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhc
Confidence            4555544432       1344444333   33 4789999999999999986   7789999999999999999987653


Q ss_pred             ccc----c-----c-cCCCcEEEECCcccCCccccceeEEEEeCHHHHHH
Q 013019          340 NQK----A-----L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ  379 (451)
Q Consensus       340 ~~~----p-----l-~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~  379 (451)
                      ...    +     . .....+++.|++|.++..| .+.|++++....++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G-~R~G~~~~~~~~~~~  264 (394)
T d2ay1a_         216 DGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAAT  264 (394)
T ss_dssp             SCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHH
T ss_pred             ccccccchhhhhhhhhcccccccccccccccCCc-ccccchhhchhHHHH
Confidence            221    0     0 1123467789999998776 457777766544443

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.2e-14  Score=147.68  Aligned_cols=206  Identities=12%  Similarity=0.137  Sum_probs=142.0

Q ss_pred             HHHHHHhhhCC---CcEEEeCCHH-HHHHHHHHHH---ccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          215 VEEKMSALEGA---ESTVIMASGM-SASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       215 Lee~LA~l~ga---e~~vv~sSG~-aAi~~al~al---l~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      +.+++++++|.   ..++++++|+ +++.+++.++   ..++++||++...|.+....    +...|++..+++.     
T Consensus        99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a----~~~~g~~~~~v~~~~~~~  174 (445)
T d3bc8a1          99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS----MVTAGFEPVVIENVLEGD  174 (445)
T ss_dssp             HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH----HHHTTCEEEEECCEEETT
T ss_pred             HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHH----HHHcCCeeEEEEeeccCc
Confidence            34567777775   3566667666 4555555544   45678999999999876643    4456777666642     


Q ss_pred             ---CCHHHHHHhhcC---CCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCCcc--c----cccC-CCc
Q 013019          283 ---ADMEGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--K----ALSL-GAD  349 (451)
Q Consensus       283 ---~D~d~Le~ai~~---~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~~~--~----pl~~-GaD  349 (451)
                         .|+++|+++|++   .++.+|++..|+|++|.+.|+++|+++|+++|+++++|++++.....  .    .... ++|
T Consensus       175 ~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~vd  254 (445)
T d3bc8a1         175 ELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID  254 (445)
T ss_dssp             EEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCC
T ss_pred             ccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCcCCcc
Confidence               489999998853   24889999999999999999999999999999999999998765321  1    1223 489


Q ss_pred             EEEECCcccCCccccceeEEEEe-CHHHHHHHHHHhHhhCCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHc
Q 013019          350 LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEA  426 (451)
Q Consensus       350 iVv~S~SK~l~G~gdv~gG~Iv~-~~eli~~lr~~~~~~G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~  426 (451)
                      +++.|+||+++++.  .+|+++. +.++++++.......+........|..+.  +.+.+...+++..+++..+.+.|++
T Consensus       255 ~~~~s~hK~~~~p~--g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~  332 (445)
T d3bc8a1         255 AFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK  332 (445)
T ss_dssp             EEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEecCccccccCC--CCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999887664  2556655 45666666655444444444455555443  3344455566666777777766654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.1e-14  Score=142.72  Aligned_cols=167  Identities=14%  Similarity=0.170  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHhhhCCC--cEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-----C
Q 013019          211 TTVVVEEKMSALEGAE--STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----P  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae--~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-----~  282 (451)
                      ..+++++.|++++|.+  ..+++ +||++++..++..++.+||++++....+.+.....  .....+..+..+.     .
T Consensus        53 i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  130 (388)
T d1h0ca_          53 IMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVD--IGERIGARVHPMTKDPGGH  130 (388)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHH--HHHHHC--CBCCBCCTTCC
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeecc--ccccccccccccccCCccc
Confidence            3567799999999984  24555 57889999999999999999999887776643221  2222333322222     2


Q ss_pred             CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCcccCCc
Q 013019          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGG  361 (451)
Q Consensus       283 ~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~SK~l~G  361 (451)
                      .|.+++++.+...++++|++...+|.+|.+.|+++|.++|+++|+++++|.+.+.+ ...+..++|+|+++.|.+|+++|
T Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~g  210 (388)
T d1h0ca_         131 YTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNA  210 (388)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCC
T ss_pred             cchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceeccccccccccccccccccceecccccccccC
Confidence            36777777665545899999999999999999999999999999999999998765 33444567999999999999998


Q ss_pred             cccceeEEEEeCHHHHHHHH
Q 013019          362 HNDVLAGSISGSGKLVTQIR  381 (451)
Q Consensus       362 ~gdv~gG~Iv~~~eli~~lr  381 (451)
                      ++  .+|+++.+++.++.+.
T Consensus       211 p~--g~~~~~~~~~~~~~~~  228 (388)
T d1h0ca_         211 PP--GTSLISFSDKAKKKMY  228 (388)
T ss_dssp             CT--TCEEEEECHHHHHHHT
T ss_pred             CC--ceEEEeecHHHHHhhh
Confidence            87  4678888887776653

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.2e-14  Score=144.04  Aligned_cols=171  Identities=12%  Similarity=0.050  Sum_probs=116.4

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCC--------CcEEEeCCHH----HHHHHHHHHHccCCCeEEEcCCCCcchHHHHH
Q 013019          200 ASFEYGRYGNPTTVVVEEKMSALEGA--------ESTVIMASGM----SASTVMLLALVPAGGHIVTTTDCYRKTRIFIE  267 (451)
Q Consensus       200 ~~~~Y~R~~npt~~~Lee~LA~l~ga--------e~~vv~sSG~----aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~  267 (451)
                      ..+.|+  +.....+|++.+++++..        +..+++.++.    .++.+++..++.+||+|++++|.|......  
T Consensus        62 ~~~~Y~--p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~--  137 (397)
T d3tata_          62 GASLYL--PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAI--  137 (397)
T ss_dssp             SSBCCC--CTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHH--
T ss_pred             cCCCCC--CcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHH--
Confidence            344565  334455788888887632        2333332222    256666777889999999999999987644  


Q ss_pred             HhhhcCCcEEEEeCC-------CCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc---HHHHHHHHHhcCCEEEEecCC
Q 013019          268 TVLPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF  335 (451)
Q Consensus       268 ~~l~~~Gi~v~~vd~-------~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D---L~~IaelA~~~g~~lVVD~tf  335 (451)
                        ++..|.++..++.       .|.+++.+.+..  .+++++++++|+||||.+.+   +++|.++|+++++++|.|++|
T Consensus       138 --~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y  215 (397)
T d3tata_         138 --FAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAY  215 (397)
T ss_dssp             --HHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSC
T ss_pred             --HHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhh
Confidence              3455777666653       246665555432  24789999999999999986   678999999999999999998


Q ss_pred             CCCCcc-c----cc----cCC-CcEEEECCcccCCccccceeEEEEeCHHHH
Q 013019          336 ATPLNQ-K----AL----SLG-ADLVLHSATKFIGGHNDVLAGSISGSGKLV  377 (451)
Q Consensus       336 a~~~~~-~----pl----~~G-aDiVv~S~SK~l~G~gdv~gG~Iv~~~eli  377 (451)
                      ...... .    ..    ..+ --+++.|+||.++.+|. +.|++++...++
T Consensus       216 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~~~~~~~~~  266 (397)
T d3tata_         216 QGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE-RVGGLSVMCEDA  266 (397)
T ss_dssp             TTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTT-CCBCCEEECSST
T ss_pred             hhhccCCcccchhhhhhhhcCCceEEEecCcccccccCc-cccccccchhHH
Confidence            764321 1    10    111 23888999999988774 567777655443

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.1e-14  Score=149.45  Aligned_cols=221  Identities=17%  Similarity=0.114  Sum_probs=146.7

Q ss_pred             CCccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCeEEEcC--------CCCcchHHHHHHhhh
Q 013019          200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTT--------DCYRKTRIFIETVLP  271 (451)
Q Consensus       200 ~~~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~VIv~~--------~~Y~~t~~~l~~~l~  271 (451)
                      +...|+  ++|+..+||+++++++|.+.+++++||++|+..++.+++++||+++...        ..|..+..   ....
T Consensus        66 gd~~Y~--~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~---~~~~  140 (467)
T d2v1pa1          66 GDEAFS--GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ---GHSQ  140 (467)
T ss_dssp             CCCCSS--SCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHH---HHHH
T ss_pred             cchhhc--CCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccH---HHHH
Confidence            445677  6899999999999999999999999999999999999988876543332        33333221   1223


Q ss_pred             cCCcEEEEeC---------------CCCHHHHHHhhcC---CCeEEEEEeCCCCCcc-ccc---cHHHHHHHHHhcCCEE
Q 013019          272 KMGITATVID---------------PADMEGLEAALNN---NNVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIV  329 (451)
Q Consensus       272 ~~Gi~v~~vd---------------~~D~d~Le~ai~~---~~tklV~lesPsNPtG-~v~---DL~~IaelA~~~g~~l  329 (451)
                      ..|..+..++               ..|+++|++++++   ..+++|++|..+|..| .+.   ++++|.++|++||++|
T Consensus       141 ~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l  220 (467)
T d2v1pa1         141 INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPV  220 (467)
T ss_dssp             HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCE
T ss_pred             HcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEE
Confidence            3466665543               1368899988863   2378899998887654 333   6889999999999999


Q ss_pred             EEecCCCCC-----------Ccc-cc------ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHH-HHHHhH---h-
Q 013019          330 CIDGTFATP-----------LNQ-KA------LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHH---V-  386 (451)
Q Consensus       330 VVD~tfa~~-----------~~~-~p------l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~-lr~~~~---~-  386 (451)
                      ++|++...+           +.. ..      +-..+|++..|.+|.++++.   ||+++.+++.+.. .+..+.   . 
T Consensus       221 ~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~~~~  297 (467)
T d2v1pa1         221 VMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLCVVQ  297 (467)
T ss_dssp             EEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             EEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhccccccc
Confidence            999995321           100 00      11137999999999998875   8898887654332 222211   1 


Q ss_pred             hC----CCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          387 LG----GALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       387 ~G----~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      .+    .......+.....  .+......+++..++++.+.+.|++..
T Consensus       298 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (467)
T d2v1pa1         298 EGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIG  345 (467)
T ss_dssp             TSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            11    1222322222222  222224556777789999999998864

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=3e-13  Score=132.59  Aligned_cols=167  Identities=14%  Similarity=0.085  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHhhhCCCc---EEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC---
Q 013019          210 PTTVVVEEKMSALEGAES---TVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---  282 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae~---~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~---  282 (451)
                      ...++.++.|++++|++.   .++ .+||+.++.+++..+..++|.+++....+.....................+.   
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR  112 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccccCC
Confidence            346788999999999832   244 4678899999999999888887777655544332221112222222222221   


Q ss_pred             C--CHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccC
Q 013019          283 A--DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (451)
Q Consensus       283 ~--D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l  359 (451)
                      .  +.+.......+ ++++|.+...+|-||...|+++|.++||++|+++++|.+++.+. ..+.-++|+|+++.|.+|++
T Consensus       113 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l  191 (361)
T d1m32a_         113 PDVQAIDAILNADP-TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCI  191 (361)
T ss_dssp             CCHHHHHHHHHHCT-TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTT
T ss_pred             ccchhhHHHHHhcc-CccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccceEEeeecccc
Confidence            1  12333444455 49999999999999999999999999999999999999987653 23444679999999999999


Q ss_pred             CccccceeEEEEeCHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQ  379 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~  379 (451)
                      +|+.  ..|+++.+++.+++
T Consensus       192 ~gp~--G~g~l~~~~~~~~~  209 (361)
T d1m32a_         192 QGVP--GFAFVIAREQKLAA  209 (361)
T ss_dssp             CCCS--SEEEEEEEHHHHTT
T ss_pred             cCCC--CceEEEechhhhhh
Confidence            8774  37888888766543

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=7.4e-13  Score=131.20  Aligned_cols=214  Identities=14%  Similarity=0.113  Sum_probs=145.5

Q ss_pred             HHHHHHHHhhhCC-----Cc-EEEeCCHHHHHHHHHHHHc---cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-
Q 013019          213 VVVEEKMSALEGA-----ES-TVIMASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-  282 (451)
Q Consensus       213 ~~Lee~LA~l~ga-----e~-~vv~sSG~aAi~~al~all---~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-  282 (451)
                      +++++.+.++++.     .+ .++++||++++.+++..++   ++||+|++....+.+..  +...+...+..+..+.. 
T Consensus        39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~--~~~~~~~~~~~~~~~~~~  116 (382)
T d2bkwa1          39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDR--FADCLRSYGAQVDVVRPL  116 (382)
T ss_dssp             HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHH--HHHHHHHTTCEEEEECCS
T ss_pred             HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhh--hhhhcccccccccccccc
Confidence            3445555666542     23 4455788899999999986   57999999876665533  22345556666655432 


Q ss_pred             -----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhc--CCEEEEecCCCCC-CccccccCCCcEEEEC
Q 013019          283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATP-LNQKALSLGADLVLHS  354 (451)
Q Consensus       283 -----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~--g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S  354 (451)
                           .+.+.+++++.+++++++++...+|.||...+++++.++|+++  ++++++|.+.+.+ ...+.-++|+|+++.|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s  196 (382)
T d2bkwa1         117 KIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTA  196 (382)
T ss_dssp             STTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred             CCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccCeeEEeec
Confidence                 3577777777655689999988999999999999999998876  5999999997654 3344456799999999


Q ss_pred             CcccCCccccceeEEEEeCHHHHHHHHHHhHh--------------------------hCCCccHHHHHHHHHhhHHH--
Q 013019          355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------------LGGALNPNAAYLIIRGMKTL--  406 (451)
Q Consensus       355 ~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~--------------------------~G~~ls~~~a~l~lrgL~tl--  406 (451)
                      .+|+++|+.  ..|+++.++++++++......                          ...+.+....+.+..+|+.+  
T Consensus       197 ~~K~l~gP~--G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~  274 (382)
T d2bkwa1         197 SQKAIGAPA--GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILE  274 (382)
T ss_dssp             SSSTTCCCS--CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccCcCCC--chhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHH
Confidence            999997664  378999999887665322110                          01123333334444455543  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHcCCCe
Q 013019          407 ---HLRVQQQNSTALRMAEILEAHPKV  430 (451)
Q Consensus       407 ---~~Rl~~~~~nA~~Lae~L~~~p~V  430 (451)
                         ..+.+++.+.+..+.+.+.+.+.+
T Consensus       275 ~g~~~~~~~~~~l~~~l~~~l~~~~~~  301 (382)
T d2bkwa1         275 EGLHKRWDLHREMSDWFKDSLVNGLQL  301 (382)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhhhHHHHHHHHHHHHHHhhhcccc
Confidence               334556666677777777776554

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.52  E-value=3.4e-14  Score=141.79  Aligned_cols=168  Identities=15%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHH------ccCCCeEEEcCCCCcchHHHHHHh-hhcCCcEEEEe
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLAL------VPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVI  280 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~al------l~~GD~VIv~~~~Y~~t~~~l~~~-l~~~Gi~v~~v  280 (451)
                      ...+++++++|++.|+  ++.++++++++++..++...      ..+|+.|++.+..|.+........ .+...+.+...
T Consensus        70 ~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (404)
T d1qz9a_          70 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR  149 (404)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc
Confidence            4466899999999997  57778888888877665432      357888888888877654433332 22222333333


Q ss_pred             CCCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccC
Q 013019          281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFI  359 (451)
Q Consensus       281 d~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l  359 (451)
                      ...+++.++++++++ |++|.+...+|.||.+.|+++|+++|+++|+.+++|.+++.+. ..+..++++|+++.|.+|++
T Consensus       150 ~~~~~~~~~~~i~~~-T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~  228 (404)
T d1qz9a_         150 LVDSPEELPQAIDQD-TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYL  228 (404)
T ss_dssp             EESSGGGHHHHCSTT-EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTT
T ss_pred             ccccchhHHHhcCCC-ceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhc
Confidence            334678889999885 9999999999999999999999999999999999999987653 23334568999999999998


Q ss_pred             CccccceeEEEEeCHHHHHH
Q 013019          360 GGHNDVLAGSISGSGKLVTQ  379 (451)
Q Consensus       360 ~G~gdv~gG~Iv~~~eli~~  379 (451)
                      .++.. .+|+++.++++.+.
T Consensus       229 ~~~~g-~~g~~~~~~~~~~~  247 (404)
T d1qz9a_         229 NGGPG-SQAFVWVSPQLCDL  247 (404)
T ss_dssp             CCCTT-CCCEEEECTTTTTT
T ss_pred             ccCCc-eEEEEEechhhhhh
Confidence            65431 36788877765544

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.50  E-value=1.8e-13  Score=140.03  Aligned_cols=214  Identities=16%  Similarity=0.128  Sum_probs=150.6

Q ss_pred             CchhHHHHHHHH----HhhhCCC----cEEE-eCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhh--hcC---
Q 013019          208 GNPTTVVVEEKM----SALEGAE----STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVL--PKM---  273 (451)
Q Consensus       208 ~npt~~~Lee~L----A~l~gae----~~vv-~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l--~~~---  273 (451)
                      |+...+++|...    .++++.+    .+-+ .-||+.|+.+++.++++|||+|+..+...|+....- ...  ...   
T Consensus        71 G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~  149 (470)
T d1rv3a_          71 GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISAT  149 (470)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHH
T ss_pred             CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccc
Confidence            667777776544    7788875    3333 469999999999999999999999988877743210 000  000   


Q ss_pred             --CcEEEEe--C----CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCC-----CCCCc
Q 013019          274 --GITATVI--D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLN  340 (451)
Q Consensus       274 --Gi~v~~v--d----~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tf-----a~~~~  340 (451)
                        ..+....  +    ..|.+++++..++.++++|++..-.  +.+..|++++.++|++.|++|++|-++     +.+..
T Consensus       150 ~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~  227 (470)
T d1rv3a_         150 SIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC--YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVV  227 (470)
T ss_dssp             HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSS
T ss_pred             cceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhh--ccccCCHHHHHHHHhccCCeEEecchhhhhhcccccc
Confidence              1222222  2    2488999988876678999985443  567889999999999999999999996     34577


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCHH---------------HHHHHHHHhH--hhCCC-ccHHHHHH--HH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHH--VLGGA-LNPNAAYL--II  400 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e---------------li~~lr~~~~--~~G~~-ls~~~a~l--~l  400 (451)
                      ++|++. +|+|..|+||.|.|+.   ||+|..+++               +.+++.....  ..|+. ++...+..  +.
T Consensus       228 ~sPl~~-aDvvt~tTHKtlrGPr---gGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~  303 (470)
T d1rv3a_         228 PSPFEH-CHVVTTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK  303 (470)
T ss_dssp             CCGGGT-CSEEEEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH
T ss_pred             CChhhe-eeeeeeehhhhccCCc---ceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHH
Confidence            899986 7999999999999995   999998653               5566665432  12222 22222221  12


Q ss_pred             Hhh-HHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          401 RGM-KTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       401 rgL-~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      ..+ .....-.++..+||+.|++.|.++.
T Consensus       304 ea~~~~fk~Ya~qvv~NAk~La~~L~~~G  332 (470)
T d1rv3a_         304 QAMTPEFKEYQRQVVANCRALSAALVELG  332 (470)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            222 2455667888999999999999874

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.49  E-value=2.5e-13  Score=138.59  Aligned_cols=215  Identities=18%  Similarity=0.148  Sum_probs=140.6

Q ss_pred             CchhHHHHH----HHHHhhhCCCc-----EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHH--HHh--hhcCC
Q 013019          208 GNPTTVVVE----EKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI--ETV--LPKMG  274 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae~-----~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l--~~~--l~~~G  274 (451)
                      |+...+++|    ++..++++++.     .+=.-||+.|+.+++.+|++|||+|+..+...|+....-  ...  ....|
T Consensus        67 G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g  146 (463)
T d2a7va1          67 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS  146 (463)
T ss_dssp             ----CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC------------------------
T ss_pred             CchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcCCCceEEeeccCcCccccccccccccccccee
Confidence            344444444    55777889865     355679999999999999999999999998888753211  000  11112


Q ss_pred             cEEEE--e--CC----CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCC-----CCCCcc
Q 013019          275 ITATV--I--DP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF-----ATPLNQ  341 (451)
Q Consensus       275 i~v~~--v--d~----~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tf-----a~~~~~  341 (451)
                      +.+..  +  +.    .|.+++++.+++.++++|++..-  -+.+..|++++.++|++.|++|++|.++     +.+..+
T Consensus       147 ~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S--~y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~  224 (463)
T d2a7va1         147 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS--AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP  224 (463)
T ss_dssp             -------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCS--SCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred             eEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEeccc--ccccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhc
Confidence            21111  1  21    48999999887767899998543  3567889999999999999999999995     456778


Q ss_pred             ccccCCCcEEEECCcccCCccccceeEEEEeCH---------------HHHHHHHHHhH--hhCCCc-cHHHHHH--HHH
Q 013019          342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLHH--VLGGAL-NPNAAYL--IIR  401 (451)
Q Consensus       342 ~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~---------------eli~~lr~~~~--~~G~~l-s~~~a~l--~lr  401 (451)
                      +|++. +|+|..|+||.|.|+.   ||+|.+++               ++.+++...-.  ..|+.. +...+..  +..
T Consensus       225 sP~~~-aDvvt~tTHKTlrGPr---gGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~e  300 (463)
T d2a7va1         225 SPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ  300 (463)
T ss_dssp             CGGGT-CSEEEEESSGGGCSCS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH
T ss_pred             Chhhh-hhhhhchhhhhhcCCC---ceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHH
Confidence            99987 7999999999999995   99999875               56667765432  223222 2222221  122


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHHHcCC
Q 013019          402 GM-KTLHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       402 gL-~tl~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                      .+ .....-.++..+||+.|++.|.++.
T Consensus       301 a~~~~fk~Ya~qVv~NAk~La~~L~~~G  328 (463)
T d2a7va1         301 ACTPMFREYSLQVLKNARAMADALLERG  328 (463)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            22 2355668889999999999999874

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=2.7e-12  Score=132.72  Aligned_cols=225  Identities=16%  Similarity=0.170  Sum_probs=152.7

Q ss_pred             CchhHHHHH----HHHHhhhCCC-----------cEEEeCCHHHHHHHHHHHHcc----------CC---------CeEE
Q 013019          208 GNPTTVVVE----EKMSALEGAE-----------STVIMASGMSASTVMLLALVP----------AG---------GHIV  253 (451)
Q Consensus       208 ~npt~~~Le----e~LA~l~gae-----------~~vv~sSG~aAi~~al~all~----------~G---------D~VI  253 (451)
                      ..|....+|    ++|++++|-+           ..+++++|++|+..++.+...          .|         -.|+
T Consensus       107 ~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~  186 (476)
T d1js3a_         107 ASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY  186 (476)
T ss_dssp             GCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEE
Confidence            346555554    5567777753           357888889888888765321          01         1477


Q ss_pred             EcCCCCcchHHHHHHhhhcCCcEEEEeCC-----CCHHHHHHhhcCC-----CeEEEEEeCCCCCccccccHHHHHHHHH
Q 013019          254 TTTDCYRKTRIFIETVLPKMGITATVIDP-----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCH  323 (451)
Q Consensus       254 v~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----~D~d~Le~ai~~~-----~tklV~lesPsNPtG~v~DL~~IaelA~  323 (451)
                      +++..|.+..    +.+..+|+.+..++.     .|+++|+++|++.     .+-+|+....++.+|.+.|+++|+++|+
T Consensus       187 ~s~~~H~Si~----ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~  262 (476)
T d1js3a_         187 ASDQAHSSVE----RAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH  262 (476)
T ss_dssp             EETTCCHHHH----HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred             ecccccHHHH----HHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHH
Confidence            8888887654    344455777666653     4799999999642     2467888889999999999999999999


Q ss_pred             hcCCEEEEecCCCCCCc----ccccc---CCCcEEEECCcccCCccccceeEEEEeCH-HHHHH--------HHHHhHh-
Q 013019          324 KKGAIVCIDGTFATPLN----QKALS---LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQ--------IRNLHHV-  386 (451)
Q Consensus       324 ~~g~~lVVD~tfa~~~~----~~pl~---~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~--------lr~~~~~-  386 (451)
                      +||+|++||.+|+....    .+.+-   .++|.+..++||+++.+.  .+|++..++ .....        +...... 
T Consensus       263 ~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~--~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~  340 (476)
T d1js3a_         263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS  340 (476)
T ss_dssp             HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC------------C
T ss_pred             hcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCC--cceeecccchHHHHHHHhcChhhhccccccc
Confidence            99999999999876421    11111   148999999999999886  466666554 32221        1100000 


Q ss_pred             ------------hCCCccHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC
Q 013019          387 ------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       387 ------------~G~~ls~~~a~l~lr--gL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                                  .+........|+.++  |.+.+..++++..+.++++++.|+++|.++-+..|.+
T Consensus       341 ~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l  406 (476)
T d1js3a_         341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTL  406 (476)
T ss_dssp             CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCS
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCce
Confidence                        011233455666654  5667888899999999999999999999877654443

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=5.4e-12  Score=129.45  Aligned_cols=217  Identities=12%  Similarity=-0.041  Sum_probs=149.4

Q ss_pred             hhHHHHH----HHHHhhhCCC-------cEEEeCCHHHHHHHHHHHHcc-----------CC-CeEEEcCCCCcchHHHH
Q 013019          210 PTTVVVE----EKMSALEGAE-------STVIMASGMSASTVMLLALVP-----------AG-GHIVTTTDCYRKTRIFI  266 (451)
Q Consensus       210 pt~~~Le----e~LA~l~gae-------~~vv~sSG~aAi~~al~all~-----------~G-D~VIv~~~~Y~~t~~~l  266 (451)
                      |...++|    ++|++++|.+       ..+++++|++|+.+++.+...           .+ ..++++...|.+.    
T Consensus        89 P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~----  164 (450)
T d1pmma_          89 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW----  164 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHH----
T ss_pred             ccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHH----
Confidence            5555554    5788888852       268888999999988876432           12 2467766666543    


Q ss_pred             HHhhhcCCcEEEEeCC------CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHH------HhcCCEEEEecC
Q 013019          267 ETVLPKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLC------HKKGAIVCIDGT  334 (451)
Q Consensus       267 ~~~l~~~Gi~v~~vd~------~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA------~~~g~~lVVD~t  334 (451)
                      .+.++.+|++++.++.      .|+++|+++++++ |.+|+...+++.||.+.|+++|.++|      +++|++++||.+
T Consensus       165 ~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~~-t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA  243 (450)
T d1pmma_         165 HKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAA  243 (450)
T ss_dssp             HHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCTT-EEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECT
T ss_pred             HHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhhC-ceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehh
Confidence            3566778999888753      3799999999985 99999999999999999988887774      568999999999


Q ss_pred             CCCCCc---cc--cc---cCCCcEEEECCcccCCccccceeEEEEeCH-HHHHHHHHHh-HhhC----------CCc--c
Q 013019          335 FATPLN---QK--AL---SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLH-HVLG----------GAL--N  392 (451)
Q Consensus       335 fa~~~~---~~--pl---~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~-eli~~lr~~~-~~~G----------~~l--s  392 (451)
                      ++.+..   ..  .+   -.++|.+..|.||++.++-  .+|++..++ ++........ .++|          ...  .
T Consensus       244 ~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~--g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~  321 (450)
T d1pmma_         244 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL--GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQ  321 (450)
T ss_dssp             TGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS--SCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHH
T ss_pred             hccceeeeechhhhhhhcccceeEeecChhhccCCCC--CeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHH
Confidence            865421   11  11   1268999999999988774  367777654 3221111000 0111          111  1


Q ss_pred             HHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013019          393 PNAAYLII--RGMKTLHLRVQQQNSTALRMAEILEAHPKVLLL  433 (451)
Q Consensus       393 ~~~a~l~l--rgL~tl~~Rl~~~~~nA~~Lae~L~~~p~V~~V  433 (451)
                      ....|..+  .|.+.+...+++..++++.+++.|+++|.++-+
T Consensus       322 ~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~  364 (450)
T d1pmma_         322 VIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI  364 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            22345433  456677888889999999999999999987654

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.41  E-value=7.2e-12  Score=123.07  Aligned_cols=168  Identities=15%  Similarity=0.192  Sum_probs=125.1

Q ss_pred             hhHHHHHHHHHhhhCC--CcEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-----
Q 013019          210 PTTVVVEEKMSALEGA--ESTVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~ga--e~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-----  281 (451)
                      ...++.++.|++++|.  +..+++ ++|+.++..++..++.+|+++++....+.+..  ........+.....+.     
T Consensus        51 ~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  128 (377)
T d1vjoa_          51 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNR--LVDMAGRYGADVRTISKPWGE  128 (377)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhh--hhhhhhhhcccccccccCCCC
Confidence            4466788999999996  346666 56789999999999999999999887776532  2233444444444332     


Q ss_pred             CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCcccCC
Q 013019          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       282 ~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~SK~l~  360 (451)
                      ..+.+..+....+.++++|.+..-+|.+|.+.|+++|.++||++|+++++|.+.+.+ ...+.-.+++|+++.|.+|+++
T Consensus       129 ~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~  208 (377)
T d1vjoa_         129 VFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLG  208 (377)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTC
T ss_pred             cccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeeccccccc
Confidence            224444444443335889999888899999999999999999999999999998765 3344456799999999999988


Q ss_pred             ccccceeEEEEeCHHHHHHHH
Q 013019          361 GHNDVLAGSISGSGKLVTQIR  381 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr  381 (451)
                      |+.  .+|+++.+++.++...
T Consensus       209 gp~--g~~~~~~~~~~~~~~~  227 (377)
T d1vjoa_         209 CSP--GASPFTMSSRAIEKLQ  227 (377)
T ss_dssp             SCS--SCEEEEECHHHHHHHH
T ss_pred             CCC--EEEEecchhhHHhhhh
Confidence            776  4778888887776544

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.38  E-value=4.6e-12  Score=129.34  Aligned_cols=218  Identities=16%  Similarity=0.149  Sum_probs=135.8

Q ss_pred             ccccCCCchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHccCCCe-------EEEcCCCCcchHHHHHHhhhcCC
Q 013019          202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH-------IVTTTDCYRKTRIFIETVLPKMG  274 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~~GD~-------VIv~~~~Y~~t~~~l~~~l~~~G  274 (451)
                      ..|+  ++|+..+||+++++++|.+.+++++||++|+..++.+++++|++       ++... .|+.+....   ....|
T Consensus        69 ~~y~--~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~-~h~~t~~~~---~~~~g  142 (465)
T d1ax4a_          69 EAYA--GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISN-FHFDTTAAH---VELNG  142 (465)
T ss_dssp             CCSS--SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEES-SCCHHHHHH---HHHTT
T ss_pred             hhhc--cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEecc-chhhhhHHH---HHHcC
Confidence            4566  68999999999999999999999999999999999999877654       33333 344333221   11223


Q ss_pred             cEEEEeC---------------CCCHHHHHHhhcC---CCeEEEEEeCCCCCcc-ccc---cHHHHHHHHHhcCCEEEEe
Q 013019          275 ITATVID---------------PADMEGLEAALNN---NNVSLFFTESPTNPFL-RCV---DVKLVSDLCHKKGAIVCID  332 (451)
Q Consensus       275 i~v~~vd---------------~~D~d~Le~ai~~---~~tklV~lesPsNPtG-~v~---DL~~IaelA~~~g~~lVVD  332 (451)
                      .......               ..|+++|+++|++   ..+.+++++.++|..| .+.   ++++|.++|++||++|++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D  222 (465)
T d1ax4a_         143 CKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD  222 (465)
T ss_dssp             CEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEE
Confidence            3332221               1378999998863   2367777777766554 333   5889999999999999999


Q ss_pred             cCCCCC-----------Ccc-c------cccCCCcEEEECCcccCCccccceeEEEEeCHH--HHHHHHHHhH-hhC---
Q 013019          333 GTFATP-----------LNQ-K------ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIRNLHH-VLG---  388 (451)
Q Consensus       333 ~tfa~~-----------~~~-~------pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~e--li~~lr~~~~-~~G---  388 (451)
                      +++..+           ... .      .....+|++..|.+|.+++++   +|+++++++  +.+..+.... ..+   
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~  299 (465)
T d1ax4a_         223 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGFVT  299 (465)
T ss_dssp             CTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCSTT
T ss_pred             CcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchHHHHHhhhccccccccCCC
Confidence            996321           000 0      001126899999999988875   788887653  3333332211 111   


Q ss_pred             -CCccHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHcCC
Q 013019          389 -GALNPNAAYLIIRGMKT--LHLRVQQQNSTALRMAEILEAHP  428 (451)
Q Consensus       389 -~~ls~~~a~l~lrgL~t--l~~Rl~~~~~nA~~Lae~L~~~p  428 (451)
                       ..+.......+...+..  ....+++..+++..|.+.|++..
T Consensus       300 ~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g  342 (465)
T d1ax4a_         300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG  342 (465)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence             11222222111112211  12345666678889999998753

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.36  E-value=2.1e-11  Score=120.49  Aligned_cols=168  Identities=19%  Similarity=0.220  Sum_probs=126.3

Q ss_pred             hhHHHHHHHHHhhhCCC--cEEEeC-CHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-----
Q 013019          210 PTTVVVEEKMSALEGAE--STVIMA-SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  281 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae--~~vv~s-SG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-----  281 (451)
                      ...+++++.|++++|.+  +.++++ ||+.++..++..++.+|+++++....+.+...  .....+.+.....+.     
T Consensus        50 ~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~  127 (388)
T d2ch1a1          50 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERA--VEMSERYGADVRTIEGPPDR  127 (388)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHH--HHHHHHTTCEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccc--hhhhhhhccccccccccccc
Confidence            44567899999999973  566664 78899999999999999999887666554322  223444555544332     


Q ss_pred             CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCcccCC
Q 013019          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       282 ~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~SK~l~  360 (451)
                      ..+.+.++.++...+++++++..-+|.+|...|+++|.++||++|+++++|.+.+.+ ...+.-++++|+++.|.+|+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~  207 (388)
T d2ch1a1         128 PFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLG  207 (388)
T ss_dssp             CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCC
T ss_pred             ccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccC
Confidence            235666666655445899999888999999999999999999999999999997654 2334446899999999999998


Q ss_pred             ccccceeEEEEeCHHHHHHHH
Q 013019          361 GHNDVLAGSISGSGKLVTQIR  381 (451)
Q Consensus       361 G~gdv~gG~Iv~~~eli~~lr  381 (451)
                      |+.  .+|+++.+++.++++.
T Consensus       208 gp~--G~g~~~~~~~~~~~~~  226 (388)
T d2ch1a1         208 APP--GITPISISPKALDVIR  226 (388)
T ss_dssp             CCS--SCEEEEECHHHHHHHH
T ss_pred             CCC--eEEEEeccHHHHHhhh
Confidence            886  4788888887776554

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.34  E-value=2.1e-10  Score=108.40  Aligned_cols=225  Identities=15%  Similarity=0.065  Sum_probs=135.7

Q ss_pred             ccCCCchhHHHHHHHHHhhhCCCcEEEe-CCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-
Q 013019          204 YGRYGNPTTVVVEEKMSALEGAESTVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-  281 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~gae~~vv~-sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-  281 (451)
                      .+.+.+|..+++|+++++++|.+..++| +||++|+..++..++..++.+++....+....... ......+..+..+. 
T Consensus        32 ~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  110 (345)
T d1v72a1          32 GPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVD  110 (345)
T ss_dssp             CSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECC
T ss_pred             cccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeechh-hHHHhcCcccccccc
Confidence            3345789999999999999999876655 89999999999999999999888776655432211 11222344444443 


Q ss_pred             ----CCCHHHHHHhhcCC-----Ce-EEEEEeCCCCCcccc---ccHHHHHHHHHhcCCEEEEecCCCCC--------Cc
Q 013019          282 ----PADMEGLEAALNNN-----NV-SLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATP--------LN  340 (451)
Q Consensus       282 ----~~D~d~Le~ai~~~-----~t-klV~lesPsNPtG~v---~DL~~IaelA~~~g~~lVVD~tfa~~--------~~  340 (451)
                          ..+++.+++.+.+.     .+ ..++...+.|+.+..   .+++++.++|++||+++++|+++...        ..
T Consensus       111 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~  190 (345)
T d1v72a1         111 GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPA  190 (345)
T ss_dssp             CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTT
T ss_pred             cccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHH
Confidence                24788999888653     12 234444555666554   45788888999999999999996421        11


Q ss_pred             cccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCC--CccHHHHHHHH--HhhHHHHHHHHHHHHH
Q 013019          341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG--ALNPNAAYLII--RGMKTLHLRVQQQNST  416 (451)
Q Consensus       341 ~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~--~ls~~~a~l~l--rgL~tl~~Rl~~~~~n  416 (451)
                      ........+.++.+..|...+..   ++.+.................+.  ......+....  ...........+..+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~  267 (345)
T d1v72a1         191 EMTWKAGVDALSFGATKNGVLAA---EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAA  267 (345)
T ss_dssp             TTTGGGTCCEEEECCGGGTCSSC---EEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHH
T ss_pred             HhhccccccccccCccccccccc---cccccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhhhhhhccchhhH
Confidence            11112234455555555443332   33334444333332222222222  22222222222  2223344455666677


Q ss_pred             HHHHHHHHHcCCCeEE
Q 013019          417 ALRMAEILEAHPKVLL  432 (451)
Q Consensus       417 A~~Lae~L~~~p~V~~  432 (451)
                      .+.+.+.|.++|++..
T Consensus       268 ~~~~~~~l~~~~g~~~  283 (345)
T d1v72a1         268 AQRLAQGLEGLGGVEV  283 (345)
T ss_dssp             HHHHHHHHTTCTTEEE
T ss_pred             HHHHHHHHHhcCCcEe
Confidence            8889999999999854

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.7e-11  Score=119.44  Aligned_cols=227  Identities=18%  Similarity=0.122  Sum_probs=149.8

Q ss_pred             CchhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc----------CCCeEEEcCCCCcc-hHHHHH--------H
Q 013019          208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRK-TRIFIE--------T  268 (451)
Q Consensus       208 ~npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~----------~GD~VIv~~~~Y~~-t~~~l~--------~  268 (451)
                      .++....+++.++++.+.+...+++||++|+..++.....          ...+++.....|.+ +...+.        .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~  160 (404)
T d2byla1          81 YNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYD  160 (404)
T ss_dssp             EESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHT
T ss_pred             ccchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCccccc
Confidence            4566778899999999999999999999999999875431          12356666666654 322221        1


Q ss_pred             hhhcCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCC------C
Q 013019          269 VLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT------P  338 (451)
Q Consensus       269 ~l~~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~------~  338 (451)
                      .+....-.+..++..|++++++++.++++.+|++|......|....    +++|.++|++||+++|+||++..      .
T Consensus       161 ~~~p~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~  240 (404)
T d2byla1         161 GFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW  240 (404)
T ss_dssp             TSCSCCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CCCCCCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccccc
Confidence            1111222455678889999999998767899999977666665544    89999999999999999998632      1


Q ss_pred             CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHHH--HHHHHHH
Q 013019          339 LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNST  416 (451)
Q Consensus       339 ~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~R--l~~~~~n  416 (451)
                      +.+.-...-.||++  ++|.++|.. ..+|++++++++.+.+...........+|..+..++..|+.+...  +++..+.
T Consensus       241 ~a~~~~gv~PDi~~--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~  317 (404)
T d2byla1         241 LAVDYENVRPDIVL--LGKALSGGL-YPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKL  317 (404)
T ss_dssp             SGGGGGTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             chhhhcCCCCCEEE--ECchhhCCC-ccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHh
Confidence            22222223358885  789998643 357888889888766544322111234677777666666665432  3444444


Q ss_pred             HHHHHHHHHc--CCCeEEEecCC
Q 013019          417 ALRMAEILEA--HPKVLLLFITL  437 (451)
Q Consensus       417 A~~Lae~L~~--~p~V~~V~yPg  437 (451)
                      ...+.+.|++  ++.|..|+.-|
T Consensus       318 g~~l~~~l~~l~~~~i~~vRg~G  340 (404)
T d2byla1         318 GIILRNELMKLPSDVVTAVRGKG  340 (404)
T ss_dssp             HHHHHHHHHTSCTTTEEEEEEET
T ss_pred             hHHHHHHHHhhccccceeeeecc
Confidence            5556666654  34566665444

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=4.8e-11  Score=118.15  Aligned_cols=166  Identities=12%  Similarity=0.094  Sum_probs=120.5

Q ss_pred             hhHHHHHHHHHhhhCCC-c-EEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCC--CH
Q 013019          210 PTTVVVEEKMSALEGAE-S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--DM  285 (451)
Q Consensus       210 pt~~~Lee~LA~l~gae-~-~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~--D~  285 (451)
                      ...+..++.|+++++.+ + .++.+||+.++..++..++++||+|++....+.+.+  +...+++.+.++..++..  +.
T Consensus        33 ~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~--~~~~a~~~~~~~~~~~~~~g~~  110 (348)
T d1iuga_          33 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT  110 (348)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHH--HHHHHHhcCcccccccccCCCc
Confidence            34566788888998874 3 344678889999999999999999888776654432  335667778777665432  11


Q ss_pred             HHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcC--CEEEEecCCCCCC-ccccccCCCcEEEECCcccCCcc
Q 013019          286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPL-NQKALSLGADLVLHSATKFIGGH  362 (451)
Q Consensus       286 d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g--~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l~G~  362 (451)
                      ..++...++ ++++|++....+.+|.+.|+++|.++|++++  +++++|.+.+.+. ..+.-.+++|+++.|.+|+++|+
T Consensus       111 ~~~~~~~~~-~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gp  189 (348)
T d1iuga_         111 PRPEDVAKE-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCP  189 (348)
T ss_dssp             CCTTTSCCS-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCC
T ss_pred             ccccccccc-CCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecC
Confidence            112222233 4788888877788999999999999999875  7899999865432 23333568999999999999666


Q ss_pred             ccceeEEEEeCHHHHHHH
Q 013019          363 NDVLAGSISGSGKLVTQI  380 (451)
Q Consensus       363 gdv~gG~Iv~~~eli~~l  380 (451)
                      .  ..|+++.++++++++
T Consensus       190 p--G~~~v~~s~~~le~~  205 (348)
T d1iuga_         190 P--GLGFVALSPRALERL  205 (348)
T ss_dssp             S--CEEEEEECHHHHHTC
T ss_pred             C--ceeeeeechHHHhhh
Confidence            5  378899998877653

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=2.9e-10  Score=114.10  Aligned_cols=227  Identities=15%  Similarity=0.104  Sum_probs=148.8

Q ss_pred             CCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcc-hHHHHH--------HhhhcC
Q 013019          207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRK-TRIFIE--------TVLPKM  273 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~-t~~~l~--------~~l~~~  273 (451)
                      +.++....|.+.+.+....  +.+.+++||++|+..++....  .....|+.....|.+ +...+.        ......
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~  155 (387)
T d1vefa1          76 LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL  155 (387)
T ss_dssp             SCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC
T ss_pred             cCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCC
Confidence            4567777777777776654  356778899999999887542  234578888877765 322211        111112


Q ss_pred             CcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC------Ccccc
Q 013019          274 GITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKA  343 (451)
Q Consensus       274 Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~------~~~~p  343 (451)
                      .-.+.+++..|.+.|++.++++ +.+|++|......|....    +++|.++|+++|+++|+||++...      ..+.-
T Consensus       156 ~~~~~~~p~~d~~~l~~~~~~~-iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~  234 (387)
T d1vefa1         156 VEPVEFIPYNDVEALKRAVDEE-TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEH  234 (387)
T ss_dssp             SSCEEEECTTCHHHHHHHCCTT-EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHH
T ss_pred             CCCceEeCCCCHHHHHHhcCCC-eEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCccccc
Confidence            2356677888999999999875 999999876655565544    899999999999999999996431      22222


Q ss_pred             ccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHHH--HHHHHHHHHHHH
Q 013019          344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLR--VQQQNSTALRMA  421 (451)
Q Consensus       344 l~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~R--l~~~~~nA~~La  421 (451)
                      ...-.|+++  ++|.++|.-  ..+.+++.++.++.+...........+|..+..++..|+.+...  .++..+....+.
T Consensus       235 ~~v~PDi~~--~gK~l~gG~--~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~  310 (387)
T d1vefa1         235 FGIVPDILT--LAKALGGGV--PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFM  310 (387)
T ss_dssp             HTCCCSEEE--ECGGGGTTS--SCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCcCCceee--ecccCCCCc--cccccccceeeeeccccCCccccCCCCcchhhhcccchhhcccccccchHhhhhHHHH
Confidence            333468888  689888642  45666677766655433221111233688777777677666432  455556667777


Q ss_pred             HHHHc--CCCeEEEecCCC
Q 013019          422 EILEA--HPKVLLLFITLL  438 (451)
Q Consensus       422 e~L~~--~p~V~~V~yPgL  438 (451)
                      +.|++  ++.|..|+.-|+
T Consensus       311 ~~L~~l~~~~v~~vrg~Gl  329 (387)
T d1vefa1         311 EKLRAIPSPKIREVRGMGL  329 (387)
T ss_dssp             HHHHTSCCTTEEEEEEETT
T ss_pred             HHHHhcCCCceEEEeecce
Confidence            77775  467777765553

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.25  E-value=4.1e-10  Score=113.42  Aligned_cols=227  Identities=17%  Similarity=0.156  Sum_probs=143.5

Q ss_pred             chhHHHHHHHHHhhhCCCcEEEeCCHHHHHHHHHHHHcc----------CCCeEEEcCCCCcchHHHHHHhhh-------
Q 013019          209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----------AGGHIVTTTDCYRKTRIFIETVLP-------  271 (451)
Q Consensus       209 npt~~~Lee~LA~l~gae~~vv~sSG~aAi~~al~all~----------~GD~VIv~~~~Y~~t~~~l~~~l~-------  271 (451)
                      +.....+++.+.++.+.+.+.++.||++|+..++.....          ....++.....|.+..........       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~  159 (404)
T d1z7da1          80 SVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSN  159 (404)
T ss_dssp             EHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred             hHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccC
Confidence            455677888899999999999999999998888764321          123577776666653221111100       


Q ss_pred             --cCCcEEEEeCCCCHHHHHHhhcCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC------C
Q 013019          272 --KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------L  339 (451)
Q Consensus       272 --~~Gi~v~~vd~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~------~  339 (451)
                        ..--.+..++..+.+.++.++.+.++.+|++|......|.+.+    +++|.++|+++|+++|+||++...      .
T Consensus       160 ~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~  239 (404)
T d1z7da1         160 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL  239 (404)
T ss_dssp             ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             CCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccc
Confidence              0001233445668889988887767999999987777777665    899999999999999999996321      2


Q ss_pred             ccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH-----HHHHHH
Q 013019          340 NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-----RVQQQN  414 (451)
Q Consensus       340 ~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~-----Rl~~~~  414 (451)
                      .+.-...-.||++  ++|.+++.. ..+|++++++++.+.++..........+|..+..++..|+.+..     ++.+..
T Consensus       240 ~~e~~gv~PDivt--~gK~l~gG~-~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~  316 (404)
T d1z7da1         240 CVHHYNVKPDVIL--LGKALSGGH-YPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEKLG  316 (404)
T ss_dssp             GGGGGTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cccccCCCCCEEE--EcccccCCC-CCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccch
Confidence            2232333468886  789998642 35788899998877665432211123467777766655554332     222222


Q ss_pred             -HHHHHHHHHHHcCCCeEEEecCCC
Q 013019          415 -STALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       415 -~nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                       .-.+.+.+.+++++.|..|+.-|+
T Consensus       317 ~~~~~~l~~~~~~~~~v~~vrg~Gl  341 (404)
T d1z7da1         317 GPFLENLKRELKDSKIVRDVRGKGL  341 (404)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEEEETT
T ss_pred             hHHHHHHHHHHhcCCCeEEEEeeCc
Confidence             223445556778899988876554

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=5.5e-10  Score=113.69  Aligned_cols=215  Identities=16%  Similarity=0.167  Sum_probs=147.4

Q ss_pred             HHHHHHHHHhhhCCCcEEE-eCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCCCCHHHH
Q 013019          212 TVVVEEKMSALEGAESTVI-MASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL  288 (451)
Q Consensus       212 ~~~Lee~LA~l~gae~~vv-~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~~D~d~L  288 (451)
                      ..++++.|+++.|-+.+-+ ...|.+|...+++...  ...+.++++..+|+.++......+...|+++..++..+....
T Consensus       110 l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~  189 (437)
T d1wyua1         110 TFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTP  189 (437)
T ss_dssp             HHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCC
T ss_pred             HHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeecccccch
Confidence            3467999999999765433 3467755554444332  345689999999999888777778888999998876543222


Q ss_pred             HHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCC-CCCccccccCCCcEEEECCcccCC------c
Q 013019          289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA-TPLNQKALSLGADLVLHSATKFIG------G  361 (451)
Q Consensus       289 e~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa-~~~~~~pl~~GaDiVv~S~SK~l~------G  361 (451)
                      ...+.+ ++.+|++++|+ -.|.+.|+++|.+++|+.|+++++|.... -.....|.++|+||++.+ +|.|+      |
T Consensus       190 ~~~~~~-~~Aavmi~~Pn-t~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~p~g~GG  266 (437)
T d1wyua1         190 LPEVGE-EVGAVVVQNPN-FLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGLPMGFGG  266 (437)
T ss_dssp             CCCCCT-TEEEEEEESSC-TTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGC
T ss_pred             hhhhcc-ceeEEEEcccc-ccccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceeccccCCCc
Confidence            223555 49999999996 58999999999999999999888775432 234567889999999988 55444      4


Q ss_pred             cccceeEEEEeCHHHHHHHH----------------------------HHhHhhCCC----ccH--HHHHHHHHhhHHHH
Q 013019          362 HNDVLAGSISGSGKLVTQIR----------------------------NLHHVLGGA----LNP--NAAYLIIRGMKTLH  407 (451)
Q Consensus       362 ~gdv~gG~Iv~~~eli~~lr----------------------------~~~~~~G~~----ls~--~~a~l~lrgL~tl~  407 (451)
                      ++   +|++.+++++...+-                            +.+.....+    +-.  ..+|+...|-+.|.
T Consensus       267 P~---~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~  343 (437)
T d1wyua1         267 PH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLR  343 (437)
T ss_dssp             SC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc---cccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHH
Confidence            43   688888876653321                            110000001    111  12455555655566


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCeEE
Q 013019          408 LRVQQQNSTALRMAEILEAHPKVLL  432 (451)
Q Consensus       408 ~Rl~~~~~nA~~Lae~L~~~p~V~~  432 (451)
                      ..-++...||..+++.|.+.++++.
T Consensus       344 ~ia~~a~~~A~yl~~~L~~~~g~~~  368 (437)
T d1wyua1         344 EVALKSVEMAHKLHALLLEVPGVRP  368 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCEE
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCeec
Confidence            5567778899999999999988864

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.02  E-value=1.2e-08  Score=103.22  Aligned_cols=214  Identities=16%  Similarity=0.174  Sum_probs=134.7

Q ss_pred             CCchhHHHHHHHHHhhhCC-CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHH---------HHHhhhc--
Q 013019          207 YGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIF---------IETVLPK--  272 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga-e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~---------l~~~l~~--  272 (451)
                      ...+....+.+.+.++.+. +.+.+++||++|+..++....  ....+||.....|.+....         ....+..  
T Consensus        89 ~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~  168 (427)
T d2gsaa_          89 APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP  168 (427)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCS
T ss_pred             cchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCC
Confidence            3456667788888887655 566677899999999987543  2346788888877652100         0000000  


Q ss_pred             -----CCcEEEEeCCCCHHHHHHhhcC--CCeEEEEEeCCCCCcccccc----HHHHHHHHHhcCCEEEEecCCCCC---
Q 013019          273 -----MGITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP---  338 (451)
Q Consensus       273 -----~Gi~v~~vd~~D~d~Le~ai~~--~~tklV~lesPsNPtG~v~D----L~~IaelA~~~g~~lVVD~tfa~~---  338 (451)
                           ........+..|++++++.+++  .++.+|++|....-.|.+.+    +++|.++|++||+++|+||++...   
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g  248 (427)
T d2gsaa_         169 GVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIA  248 (427)
T ss_dssp             SSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTB
T ss_pred             CCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceec
Confidence                 0112334566789999999975  35889999976655676665    999999999999999999996431   


Q ss_pred             --CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH-hhC--CCccHHHHHHHHHhhHHHHH--HHH
Q 013019          339 --LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTLHL--RVQ  411 (451)
Q Consensus       339 --~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~-~~G--~~ls~~~a~l~lrgL~tl~~--Rl~  411 (451)
                        ....-...-.||++  +.|.++|.  ...|++++++++++.+..... ..+  ...+|..+..++..|+.+..  -++
T Consensus       249 ~~~~~~~~gi~PDi~~--~gK~lggG--~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~  324 (427)
T d2gsaa_         249 YGGVQEKFGVTPDLTT--LGKIIGGG--LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYE  324 (427)
T ss_dssp             TTCHHHHTTCCCSEEE--ECGGGGTT--SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred             ccchHHhcCCCHHHHh--hhhccCCC--cceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHh
Confidence              11122223468888  67888764  345777889888876653211 111  23467777666666655432  233


Q ss_pred             HHHHHHHHHHHHH
Q 013019          412 QQNSTALRMAEIL  424 (451)
Q Consensus       412 ~~~~nA~~Lae~L  424 (451)
                      +..+...++.+.|
T Consensus       325 ~~~~~g~~l~~~L  337 (427)
T d2gsaa_         325 YLDQITKRLSDGL  337 (427)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH
Confidence            4444444444444

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.96  E-value=2.1e-08  Score=92.85  Aligned_cols=218  Identities=15%  Similarity=0.061  Sum_probs=120.5

Q ss_pred             CCchhHHHHHHHHHhhhCCC--cEEEeCCHHHHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC--
Q 013019          207 YGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--  282 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~gae--~~vv~sSG~aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~--  282 (451)
                      ..++..+++++++++++|.+  +.+++++|++|+..++..+.++++++++....|...+..... .......+.....  
T Consensus        32 ~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  110 (340)
T d1svva_          32 GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAI-EATGHKVVTAPCPDG  110 (340)
T ss_dssp             TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHH-HHTTCCEEEECCTTS
T ss_pred             CCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccc-cccceeeeecccccc
Confidence            36788899999999999974  456667888999999999999999999988776553322111 1122233333221  


Q ss_pred             -CCHHHHHHhhc-C----CCeEEEEEeCCCCCccccc---cHHHHHHHHHhcCCEEEEecCCCCCCc--------ccccc
Q 013019          283 -ADMEGLEAALN-N----NNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN--------QKALS  345 (451)
Q Consensus       283 -~D~d~Le~ai~-~----~~tklV~lesPsNPtG~v~---DL~~IaelA~~~g~~lVVD~tfa~~~~--------~~pl~  345 (451)
                       .+.+....+.. .    .....+++.++.|..|.+.   ++..+.++|+++|.++++|+++.....        .....
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~  190 (340)
T d1svva_         111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA  190 (340)
T ss_dssp             CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH
T ss_pred             cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccccccc
Confidence             12222222221 1    1133344444444455544   467788999999999999999642111        11111


Q ss_pred             CCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCC-CccHHH---HHHHHHhhHHHHHHHHHHHHHHHHHH
Q 013019          346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGG-ALNPNA---AYLIIRGMKTLHLRVQQQNSTALRMA  421 (451)
Q Consensus       346 ~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~-~ls~~~---a~l~lrgL~tl~~Rl~~~~~nA~~La  421 (451)
                      ...++...+..|..++.+   +++..................+. ......   +++............++..+++..+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~  267 (340)
T d1svva_         191 RLTDMFYIGATKAGGMFG---EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILK  267 (340)
T ss_dssp             HHCSEEEEECTTTTCSSC---EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             ccceeeecCCcccccccc---ccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhH
Confidence            123566666666655543   45555555444444333322222 221111   22111112223344556667777888


Q ss_pred             HHHHcCC
Q 013019          422 EILEAHP  428 (451)
Q Consensus       422 e~L~~~p  428 (451)
                      +.|++.+
T Consensus       268 ~~l~~~g  274 (340)
T d1svva_         268 AGLEACG  274 (340)
T ss_dssp             HHHHHTT
T ss_pred             HHHhcCC
Confidence            8887753

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=4.5e-08  Score=99.06  Aligned_cols=232  Identities=16%  Similarity=0.150  Sum_probs=137.3

Q ss_pred             ccCCCchhHHHHHHHHHhhhCC--CcEEEeCCHHHHHHHHHHHHc-------cCCCeEEEcCCCCcc-hHHHHHH-----
Q 013019          204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRK-TRIFIET-----  268 (451)
Q Consensus       204 Y~R~~npt~~~Lee~LA~l~ga--e~~vv~sSG~aAi~~al~all-------~~GD~VIv~~~~Y~~-t~~~l~~-----  268 (451)
                      ++++.++....+.+++.+....  +.+.+.+||++|+..++....       ....+|+.....|.+ +...+..     
T Consensus        80 ~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~  159 (429)
T d1s0aa_          80 FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDN  159 (429)
T ss_dssp             CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred             cCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCcc
Confidence            4556666677777888777643  567778999999988876542       123478888877765 3221110     


Q ss_pred             ----hhhcC-CcEEEE----------eCCCCHHHHHHhhc--CCCeEEEEEeCCC-CCccc-ccc---HHHHHHHHHhcC
Q 013019          269 ----VLPKM-GITATV----------IDPADMEGLEAALN--NNNVSLFFTESPT-NPFLR-CVD---VKLVSDLCHKKG  326 (451)
Q Consensus       269 ----~l~~~-Gi~v~~----------vd~~D~d~Le~ai~--~~~tklV~lesPs-NPtG~-v~D---L~~IaelA~~~g  326 (451)
                          ..... ......          .+..+++++++.+.  .+++.+|++|... +--|. +.+   +++|.++|+++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~g  239 (429)
T d1s0aa_         160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG  239 (429)
T ss_dssp             TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred             ccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcC
Confidence                00000 001111          01123445544443  2358999998543 33333 233   899999999999


Q ss_pred             CEEEEecCCCCC------CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhH---hhC--CCccHHH
Q 013019          327 AIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---VLG--GALNPNA  395 (451)
Q Consensus       327 ~~lVVD~tfa~~------~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~---~~G--~~ls~~~  395 (451)
                      +++|+||++...      ........-.||++  ++|.+++.. ...|++++++++.+.+.....   ..+  ...+|..
T Consensus       240 illI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~l~gG~-~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~  316 (429)
T d1s0aa_         240 ILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGT-MTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA  316 (429)
T ss_dssp             CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSS-SCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred             cceehhhccccccccccccccccceecccccc--ccccccccc-ccccchhhHHHHHhccCCCCCcceeecCCCCCCccc
Confidence            999999996431      22333344468888  689986543 357888899988887653211   011  2235777


Q ss_pred             HHHHHHhhHHHHH--HHHHHHHHHHHHHHHH---HcCCCeEEEecCCC
Q 013019          396 AYLIIRGMKTLHL--RVQQQNSTALRMAEIL---EAHPKVLLLFITLL  438 (451)
Q Consensus       396 a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L---~~~p~V~~V~yPgL  438 (451)
                      +..++..|+.+..  -+++..+....+.+.|   .+++.|..|+.-|+
T Consensus       317 ~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl  364 (429)
T d1s0aa_         317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGA  364 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETT
T ss_pred             chhhhccccccccccccchhhHHHHHHHHHHHHhccCCceEEEeeccc
Confidence            6666666665532  2333334444555555   56778888876665

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.91  E-value=2.5e-08  Score=100.75  Aligned_cols=233  Identities=11%  Similarity=0.127  Sum_probs=136.3

Q ss_pred             ccccCCCchhHHHHHHHHHhhh--CCCcEEEeCCHHHHHHHHHHHH--ccCCCeEEEcCCCCcchHHHHHHhhh-----c
Q 013019          202 FEYGRYGNPTTVVVEEKMSALE--GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLP-----K  272 (451)
Q Consensus       202 ~~Y~R~~npt~~~Lee~LA~l~--gae~~vv~sSG~aAi~~al~al--l~~GD~VIv~~~~Y~~t~~~l~~~l~-----~  272 (451)
                      +....+.++...+|.++|.++.  +.+.+.+++||++|+..++...  ....++|+..+..|.+.....-....     .
T Consensus        75 ~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~  154 (431)
T d1zoda1          75 HLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKG  154 (431)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSS
T ss_pred             ccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccc
Confidence            4455566777788888898877  3477888899999999998754  23346788888777764322111100     0


Q ss_pred             CC---cEEEEeCC--------------CC---HHHHHHhh---cCCCeEEEEEeCCCCCcccccc----HHHHHHHHHhc
Q 013019          273 MG---ITATVIDP--------------AD---MEGLEAAL---NNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKK  325 (451)
Q Consensus       273 ~G---i~v~~vd~--------------~D---~d~Le~ai---~~~~tklV~lesPsNPtG~v~D----L~~IaelA~~~  325 (451)
                      .+   .....+..              .+   ++.++..+   .++++.+|++|....-.|.+..    +++|.++|+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~  234 (431)
T d1zoda1         155 VGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR  234 (431)
T ss_dssp             SCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH
T ss_pred             cCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhc
Confidence            00   11111110              01   22332222   2335899999976554455443    89999999999


Q ss_pred             CCEEEEecCCCC----C--CccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhC--CCccHHHHH
Q 013019          326 GAIVCIDGTFAT----P--LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GALNPNAAY  397 (451)
Q Consensus       326 g~~lVVD~tfa~----~--~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G--~~ls~~~a~  397 (451)
                      |+++|.||++..    +  ..+.-...-.||++  +.|.++|.-  ..+.+++.++..+.........+  ...+|..+.
T Consensus       235 gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~gG~--p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~a  310 (431)
T d1zoda1         235 GMLLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGAGL--PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAA  310 (431)
T ss_dssp             TCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHTTS--SCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHH
T ss_pred             CceEEeccccccccccccccccccCCCCcchhc--ccccccccc--ccceeeeeecchhhhhcccccccCCCCCCcchHH
Confidence            999999999643    1  22222233468888  789888653  34566777777666544322222  234666655


Q ss_pred             HHHHhhHHHH-----HHHHHHHH-HHHHHHHHHHcCCCeEEEecCCC
Q 013019          398 LIIRGMKTLH-----LRVQQQNS-TALRMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       398 l~lrgL~tl~-----~Rl~~~~~-nA~~Lae~L~~~p~V~~V~yPgL  438 (451)
                      .+...|+.+.     .+..+..+ -.+.+.+.+.++|.|..|+.-|+
T Consensus       311 aa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Gl  357 (431)
T d1zoda1         311 VGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGL  357 (431)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEeecce
Confidence            5554444332     22222222 12334455567898888876553

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.1e-08  Score=103.20  Aligned_cols=228  Identities=13%  Similarity=0.098  Sum_probs=134.8

Q ss_pred             CCchhHHHHHHHHHhhhCC---CcEEEeCCHHHHHHHHHHHHc--cCCCeEEEcCCCCcchHHHHHHhhh-----c----
Q 013019          207 YGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP-----K----  272 (451)
Q Consensus       207 ~~npt~~~Lee~LA~l~ga---e~~vv~sSG~aAi~~al~all--~~GD~VIv~~~~Y~~t~~~l~~~l~-----~----  272 (451)
                      ..++...+|.++|.++...   +.+.+++||++|+..++....  ....+|+..+..|.+.......+..     .    
T Consensus        80 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~  159 (425)
T d1sffa_          80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG  159 (425)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSC
T ss_pred             ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcc
Confidence            3467777888889888753   456667899999999887542  2235688888777763322211110     0    


Q ss_pred             -CCcEEEEeCCC-------------CHHHHH-HhhcCCCeEEEEEeCCCCCccccc-c---HHHHHHHHHhcCCEEEEec
Q 013019          273 -MGITATVIDPA-------------DMEGLE-AALNNNNVSLFFTESPTNPFLRCV-D---VKLVSDLCHKKGAIVCIDG  333 (451)
Q Consensus       273 -~Gi~v~~vd~~-------------D~d~Le-~ai~~~~tklV~lesPsNPtG~v~-D---L~~IaelA~~~g~~lVVD~  333 (451)
                       ...........             +.+++. .....+++.+|++|......|... +   ++.|.++|+++|+++|+||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DE  239 (425)
T d1sffa_         160 LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE  239 (425)
T ss_dssp             CCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEecc
Confidence             00111111110             011111 111223588999997665555443 2   8899999999999999999


Q ss_pred             CCCC------CCccccccCCCcEEEECCcccCCccccceeEEEEeCHHHHHHHHHHhHhhCCCccHHHHHHHHHhhHHHH
Q 013019          334 TFAT------PLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH  407 (451)
Q Consensus       334 tfa~------~~~~~pl~~GaDiVv~S~SK~l~G~gdv~gG~Iv~~~eli~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~  407 (451)
                      ++..      ...+.-...-.||++  ++|.++|.  ...|++++++++.+.+...........+|..+..++..|+.+.
T Consensus       240 V~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~gG--~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~  315 (425)
T d1sffa_         240 VQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAGG--FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE  315 (425)
T ss_dssp             TTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGTS--SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcchhhHHHhcCCCcccee--cccccCCC--cceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            9643      122333334468888  78999864  2577788888887765433221112346777777776666654


Q ss_pred             HH--HHHHHHHHH----HHHHHHHcCCCeEEEecCCC
Q 013019          408 LR--VQQQNSTAL----RMAEILEAHPKVLLLFITLL  438 (451)
Q Consensus       408 ~R--l~~~~~nA~----~Lae~L~~~p~V~~V~yPgL  438 (451)
                      ..  .++..+...    .+.+.++++|.|..|+.-|+
T Consensus       316 ~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl  352 (425)
T d1sffa_         316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA  352 (425)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETT
T ss_pred             HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEcccc
Confidence            31  233333333    33445567888888876554

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=98.71  E-value=3.3e-08  Score=96.34  Aligned_cols=144  Identities=10%  Similarity=0.019  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHhhhCCCc--E-EEeCCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC----
Q 013019          211 TTVVVEEKMSALEGAES--T-VIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----  282 (451)
Q Consensus       211 t~~~Lee~LA~l~gae~--~-vv~sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~----  282 (451)
                      ..++.++.|+++++.++  . +++++|+ .++.+++..+..+|+++++..  ++.....+...+...|..+..+..    
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~--~g~~~~~~~~~~~~~g~~~~~~~~~~~~  126 (361)
T d2c0ra1          49 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVM--TGSWASKALKEAKLIGDTHVAASSEASN  126 (361)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEE--CSHHHHHHHHHHHHHSCEEEEEECGGGT
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhccccCCCceEEEe--echhhhhhhhhhhhcCceeeeecccccc
Confidence            35667899999999843  3 4444444 566667777888899887654  333334444566777888776642    


Q ss_pred             -CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCCC-ccccccCCCcEEEECCcccCC
Q 013019          283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       283 -~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~~-~~~pl~~GaDiVv~S~SK~l~  360 (451)
                       .+++.+++.+..+  +.+++   +|.||...++++|.++|+++|+++++|.+.+.+. ..+..+  .|+.+.|.+|.++
T Consensus       127 ~~~~~~~~~~~~~~--~~~~v---~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~--~di~~~s~~k~~~  199 (361)
T d2c0ra1         127 YMTLPKLQEIQLQD--NAAYL---HLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLG  199 (361)
T ss_dssp             TCSCCCGGGCCCCT--TEEEE---EEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTC
T ss_pred             ccchhhhhhhcccC--cceEE---EEecccceecceEEEeeccCCceEEEEeecccccccccccc--ceeEEEecccccc
Confidence             3566677766654  34444   4668888999999999999999999999976542 233333  4677778899998


Q ss_pred             ccc
Q 013019          361 GHN  363 (451)
Q Consensus       361 G~g  363 (451)
                      +++
T Consensus       200 ~~~  202 (361)
T d2c0ra1         200 PSG  202 (361)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            876

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=98.58  E-value=1.1e-07  Score=92.11  Aligned_cols=153  Identities=10%  Similarity=-0.052  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHhhhCC--CcEEEeCCHH-H-HHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeC-----
Q 013019          211 TTVVVEEKMSALEGA--ESTVIMASGM-S-ASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID-----  281 (451)
Q Consensus       211 t~~~Lee~LA~l~ga--e~~vv~sSG~-a-Ai~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd-----  281 (451)
                      ..++.++.|+++++.  +..+++++|+ + ++.++...+.+.++.+++....+.+..  +...+...+.......     
T Consensus        49 ~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~  126 (360)
T d1w23a_          49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEK--ALKEAKLLGETHIAASTKANS  126 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHTTSEEEEEEECGGGT
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhh--hHHHHHHhhhcceeecccccc
Confidence            456689999999997  3466776666 3 334455556777888877654433322  2234555565544432     


Q ss_pred             CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCcccCC
Q 013019          282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIG  360 (451)
Q Consensus       282 ~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~SK~l~  360 (451)
                      ..+++.++.....  ...++++   |-||...|+++|.++||++|+++++|.+.+.+ ...+.-++++|+...+..|+++
T Consensus       127 ~~~~~~~~~~~~~--~~~~~~~---~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~  201 (360)
T d1w23a_         127 YQSIPDFSEFQLN--ENDAYLH---ITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPS  201 (360)
T ss_dssp             SCSCCCGGGCCCC--TTEEEEE---EESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCT
T ss_pred             ccchhhhhhcccc--cccceeE---ecCCccccceeeeeccccceeeEEeeccccccccccccccccceEEeeccccccC
Confidence            1233444444433  3455553   55799999999999999999999999997654 3334446677777666666554


Q ss_pred             ccccceeEEEEeCH
Q 013019          361 GHNDVLAGSISGSG  374 (451)
Q Consensus       361 G~gdv~gG~Iv~~~  374 (451)
                      ++    +|+++..+
T Consensus       202 ~~----~~~~~~~~  211 (360)
T d1w23a_         202 GV----TVVIVKKD  211 (360)
T ss_dssp             TC----EEEEEEHH
T ss_pred             Cc----ceeeEech
Confidence            43    44444433

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.50  E-value=2.4e-06  Score=86.75  Aligned_cols=219  Identities=11%  Similarity=0.077  Sum_probs=117.1

Q ss_pred             hHHHHHHHHHhhhC--CCcEEEeCCHHHHHHHHHHHHc----------------------------cCCCeEEEcCCCCc
Q 013019          211 TTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV----------------------------PAGGHIVTTTDCYR  260 (451)
Q Consensus       211 t~~~Lee~LA~l~g--ae~~vv~sSG~aAi~~al~all----------------------------~~GD~VIv~~~~Y~  260 (451)
                      ..+.|.++|.++.+  .+.+++++||++|+..++....                            .+..+||.....|.
T Consensus       101 ~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syH  180 (461)
T d1ohwa_         101 FVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFH  180 (461)
T ss_dssp             HHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred             HHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcC
Confidence            34556666655543  3678888999999999886542                            12346888887776


Q ss_pred             c-hHHHHH--------Hh-hhcCCcEEEEeCC-----------------CCHHHHHHhhc-----CCCeEEEEEeCCCCC
Q 013019          261 K-TRIFIE--------TV-LPKMGITATVIDP-----------------ADMEGLEAALN-----NNNVSLFFTESPTNP  308 (451)
Q Consensus       261 ~-t~~~l~--------~~-l~~~Gi~v~~vd~-----------------~D~d~Le~ai~-----~~~tklV~lesPsNP  308 (451)
                      + |...+.        .. ....+........                 .+.+++++.+.     .+++.+|++|.....
T Consensus       181 G~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~  260 (461)
T d1ohwa_         181 GRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSE  260 (461)
T ss_dssp             CSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCT
T ss_pred             CCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeecccccc
Confidence            6 322221        00 0111111111100                 01344555442     235889999987766


Q ss_pred             ccccc-c---HHHHHHHHHhcCCEEEEecCCCC----C--CccccccCC--CcEEEECCcccCCccccceeEEEEeCHHH
Q 013019          309 FLRCV-D---VKLVSDLCHKKGAIVCIDGTFAT----P--LNQKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKL  376 (451)
Q Consensus       309 tG~v~-D---L~~IaelA~~~g~~lVVD~tfa~----~--~~~~pl~~G--aDiVv~S~SK~l~G~gdv~gG~Iv~~~el  376 (451)
                      .|... +   +++|.++|++||++||+||++..    +  +...-....  .|+++  ++|.+++      |++.....+
T Consensus       261 ~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~------g~~~~~~~~  332 (461)
T d1ohwa_         261 GGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT------GGFFHKEEF  332 (461)
T ss_dssp             TTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS------EEEEECGGG
T ss_pred             ccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc------ccccccccc
Confidence            66543 2   89999999999999999999532    2  222222222  58886  6788764      333333322


Q ss_pred             HHHHHHHhHhhCCCccHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHH----HcCC-CeEEEecCCC
Q 013019          377 VTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEIL----EAHP-KVLLLFITLL  438 (451)
Q Consensus       377 i~~lr~~~~~~G~~ls~~~a~l~lrgL~tl~~--Rl~~~~~nA~~Lae~L----~~~p-~V~~V~yPgL  438 (451)
                      .. ............+|..+..++..|+.+..  .+++..+..+.|.+.|    .++| .|..|+.-||
T Consensus       333 ~~-~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl  400 (461)
T d1ohwa_         333 RP-NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT  400 (461)
T ss_dssp             SC-SSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT
T ss_pred             cc-ccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeE
Confidence            11 01111111123456666666655655532  1233333344444444    4566 4667765554

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=2.6e-07  Score=88.58  Aligned_cols=153  Identities=10%  Similarity=-0.022  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhhhCCC--cEEEe-CCHH-HHHHHHHHHHccCCCeEEEcCCCCcchHHHHHHhhhcCCcEEEEeCC-----
Q 013019          212 TVVVEEKMSALEGAE--STVIM-ASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-----  282 (451)
Q Consensus       212 ~~~Lee~LA~l~gae--~~vv~-sSG~-aAi~~al~all~~GD~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd~-----  282 (451)
                      .++.++.|+++++++  ..+++ ++++ .++.+++..+..+++.+++....+.+  ..+....+..|+.+.....     
T Consensus        48 ~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  125 (360)
T d1bjna_          48 AEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWA--ASAIKEAKKYCTPNVFDAKVTVDG  125 (360)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHH--HHHHHHHTTTSEEEEEECEEEETT
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcccccccccceecccchh--hhhHHHHhhcCccceeeccccCCC
Confidence            567799999999983  24454 3443 45555566667778887776544443  2333456667766555431     


Q ss_pred             CCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCCC-CccccccCCCcEEEECCcccCCc
Q 013019          283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGG  361 (451)
Q Consensus       283 ~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~~-~~~~pl~~GaDiVv~S~SK~l~G  361 (451)
                      .+.+.++..+.. +++++.+...+|-||...+++.+.  ++.+++.+++|.+.+.+ ...+  ..+.|+++.|.+|.+++
T Consensus       126 ~~~~~~~~~~~~-~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd--~~~~dv~~~ss~k~~~~  200 (360)
T d1bjna_         126 LRAVKPMREWQL-SDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPID--VSRYGVIYAGAQKNIGP  200 (360)
T ss_dssp             EEEECCGGGCCC-CSSCSCEEECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCC--GGGCSEEEEETTTTTSS
T ss_pred             cchhhhhhhhcc-CCceeEEEecccccccCcccccee--cccccceeeeeeeccccceeee--eccceeEEEEccccccc
Confidence            233444555555 377777777788999998887664  56789999999986643 2222  23579999999999998


Q ss_pred             cccceeEEEEeC
Q 013019          362 HNDVLAGSISGS  373 (451)
Q Consensus       362 ~gdv~gG~Iv~~  373 (451)
                      ++  .+|+++..
T Consensus       201 ~~--~~~~~~~~  210 (360)
T d1bjna_         201 AG--LTIVIVRE  210 (360)
T ss_dssp             TT--CEEEEEEG
T ss_pred             CC--CceeEeee
Confidence            86  34444443

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=2.8e-05  Score=79.07  Aligned_cols=214  Identities=18%  Similarity=0.182  Sum_probs=129.9

Q ss_pred             HHHHHHHHhhhCCCcEEE-eCCHHHHHHHHH-HHH---ccCCC----eEEEcCCCCcchHHHHHHhhhcCCcEEEEeC--
Q 013019          213 VVVEEKMSALEGAESTVI-MASGMSASTVML-LAL---VPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVID--  281 (451)
Q Consensus       213 ~~Lee~LA~l~gae~~vv-~sSG~aAi~~al-~al---l~~GD----~VIv~~~~Y~~t~~~l~~~l~~~Gi~v~~vd--  281 (451)
                      -+++..|++|.|-+-+-. .-.|..|...++ ++.   .+.|.    .++...+.+..+.....   ...+..+..++  
T Consensus       109 fEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  185 (471)
T d1wyub1         109 WELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATA---SMAGYQVREIPSG  185 (471)
T ss_dssp             HHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHH---HHTTCEEEEECBC
T ss_pred             HHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeee---ecccceeeccccc
Confidence            457899999999864322 234544333332 222   22332    34555555655443332   22344444433  


Q ss_pred             ---CCCHHHHHHhhcCCCeEEEEEeCCCCCccccccHHHHHHHHHhcCCEEEEecCCCC--CCccccccCCCcEEEECCc
Q 013019          282 ---PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT--PLNQKALSLGADLVLHSAT  356 (451)
Q Consensus       282 ---~~D~d~Le~ai~~~~tklV~lesPsNPtG~v~DL~~IaelA~~~g~~lVVD~tfa~--~~~~~pl~~GaDiVv~S~S  356 (451)
                         ..|.+.++....++ +..+++++|++..+...+++++.+++|++|..+++|.+-..  ....+|-..|+|+++...+
T Consensus       186 ~~~~~~~~~~~~~~~~~-~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~  264 (471)
T d1wyub1         186 PEGEVDLEALKRELGPH-VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLH  264 (471)
T ss_dssp             TTSSBCHHHHHHHCSTT-EEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTT
T ss_pred             ccccccchhhhhhhhcc-ccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCcccccccccccc
Confidence               23678888877764 89999999987555545689999999999999898876322  2245566778999988888


Q ss_pred             ccCCcc---ccceeEEEEeCHHHHHHHHHH-------------------hH---hhCCCccHH--HHHHHHHhhHHHHHH
Q 013019          357 KFIGGH---NDVLAGSISGSGKLVTQIRNL-------------------HH---VLGGALNPN--AAYLIIRGMKTLHLR  409 (451)
Q Consensus       357 K~l~G~---gdv~gG~Iv~~~eli~~lr~~-------------------~~---~~G~~ls~~--~a~l~lrgL~tl~~R  409 (451)
                      +.++.+   |.--.|++..+++++.++-..                   ++   ..+..+...  ..|+.+.|-+.|..-
T Consensus       265 q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~el  344 (471)
T d1wyub1         265 KTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKA  344 (471)
T ss_dssp             TTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHH
Confidence            866522   112368888888776543210                   00   001111121  235555565556555


Q ss_pred             HHHHHHHHHHHHHHHHcCCCeE
Q 013019          410 VQQQNSTALRMAEILEAHPKVL  431 (451)
Q Consensus       410 l~~~~~nA~~Lae~L~~~p~V~  431 (451)
                      -++..++|..+++.|+. ++++
T Consensus       345 A~~~~~~A~Yla~~L~~-~G~~  365 (471)
T d1wyub1         345 AALAVLNARYLKELLKE-KGYR  365 (471)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCB
T ss_pred             HHHHHHHHHHHHHHHhh-cCce
Confidence            56778899999999976 6664