Citrus Sinensis ID: 013023

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
MESRVLSRATTTTTTISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccEEEEcEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccHHHcccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHEEHHHHEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcc
mesrvlsrattttttisslrrsplenhqnvsfislkpigavgeggnviwgrqlrpalllessnapaglfagkkEILRPilatasspaegsdsageaapvrffdrypalvTGFFFFMWYFLNVIFNILNkriynyfpyPYFVSVIHLLVGVVYCLVSWAvglpkrapidskLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIwhyadqgenHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYskkamtdmdstNIYAYISIIALFvcippaiivegpqlIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFgnkistqtgIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
mesrvlsrattttttisslrrsplenhqnvsFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATasspaegsdsaGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
MESRVLSRAttttttISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQtgigtviaiagvaaYSYIKAQMEEEKRQMKAA
*****************************VSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPIL*****************PVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK*************
**********************************************************************************************************ALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKA*TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS****************
****************SSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILAT*************AAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM**********
***************************************************************************************************RFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MESRVLSRATTTTTTISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query451 2.2.26 [Sep-21-2011]
Q9ZSR7410 Triose phosphate/phosphat yes no 0.898 0.987 0.721 1e-179
P21727402 Triose phosphate/phosphat N/A no 0.882 0.990 0.720 1e-179
P49131408 Triose phosphate/phosphat N/A no 0.900 0.995 0.699 1e-175
P11869404 Triose phosphate/phosphat N/A no 0.884 0.987 0.698 1e-174
P49132407 Triose phosphate/phosphat N/A no 0.898 0.995 0.688 1e-173
P52177407 Triose phosphate/phosphat N/A no 0.886 0.982 0.707 1e-171
Q9FTT3417 Triose phosphate/phosphat yes no 0.798 0.863 0.703 1e-163
P29463414 Triose phosphate/phosphat N/A no 0.891 0.971 0.665 1e-163
P49133409 Triose phosphate/phosphat N/A no 0.820 0.904 0.695 1e-154
Q9M5A9388 Glucose-6-phosphate/phosp no no 0.638 0.742 0.386 4e-56
>sp|Q9ZSR7|TPT_ARATH Triose phosphate/phosphate translocator TPT, chloroplastic OS=Arabidopsis thaliana GN=TPT PE=2 SV=1 Back     alignment and function desciption
 Score =  629 bits (1622), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 329/456 (72%), Positives = 358/456 (78%), Gaps = 51/456 (11%)

Query: 1   MESRVLSRATTTTTTISSLRRSPLENHQNVSFIS-----LKPIGAVGEGGNVIWGRQLRP 55
           MESRVL RAT     I  LRR     H+  S  S     +KPIG +GEG N+I GRQLRP
Sbjct: 1   MESRVLLRATANVVGIPKLRRPIGAIHRQFSTASSSSFSVKPIGGIGEGANLISGRQLRP 60

Query: 56  ALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFF 115
            LLL+SS    G    K+EIL+P+ A A   AEG D+AG+A  V F  +YP LVTGFFFF
Sbjct: 61  ILLLDSSAINGG---EKREILKPVKAAA---AEGGDTAGDAK-VGFLAKYPWLVTGFFFF 113

Query: 116 MWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLL 175
           MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL+SW+VGLPKRAPIDS LLK+L
Sbjct: 114 MWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPIDSNLLKVL 173

Query: 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLF 235
           IPVAVCHALGHVTSNVSFAAVAVSFTHTIK                              
Sbjct: 174 IPVAVCHALGHVTSNVSFAAVAVSFTHTIK------------------------------ 203

Query: 236 FIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFIS 295
                    ALEPFFNAAASQFI+GQ +P+TLWLSLAPVV+GV+MASLTELSFNW GFIS
Sbjct: 204 ---------ALEPFFNAAASQFIMGQSIPITLWLSLAPVVLGVAMASLTELSFNWLGFIS 254

Query: 296 AMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAI 355
           AMISNISFTYRSI+SKKAMTDMDSTN+YAYISIIALFVCIPPAIIVEGP+L+ HG +DAI
Sbjct: 255 AMISNISFTYRSIFSKKAMTDMDSTNVYAYISIIALFVCIPPAIIVEGPKLLNHGFADAI 314

Query: 356 SKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNK 415
           +KVGM KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNK
Sbjct: 315 AKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNK 374

Query: 416 ISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA 451
           ISTQTGIGT IAIAGVA YS IKA++EEEKRQ K A
Sbjct: 375 ISTQTGIGTGIAIAGVAMYSIIKAKIEEEKRQGKKA 410
Triose phosphate/phosphate translocator that transports inorganic phosphate, 3-phosphoglycerate (3-PGA) and triose phosphate. Functions in the export of photoassimilates from chloroplasts during the day. In the light, triose phosphates are exported from the chloroplast stroma in counter exchange with inorganic phosphate (Pi), generated during sucrose biosynthesis in the cytosol. Involved in photosynthetic acclimation, a light response resulting in increased tolerance to high-intensity light.
Arabidopsis thaliana (taxid: 3702)
>sp|P21727|TPT_PEA Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P49131|TPT_FLAPR Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P11869|TPT_SPIOL Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1 Back     alignment and function description
>sp|P49132|TPT_FLATR Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P52177|TPT1_BRAOB Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|Q9FTT3|TPT_ORYSJ Triose phosphate/phosphate translocator TPT, chloroplastic OS=Oryza sativa subsp. japonica GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P29463|TPT_SOLTU Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1 Back     alignment and function description
>sp|P49133|TPT_MAIZE Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1 Back     alignment and function description
>sp|Q9M5A9|GPT1_ARATH Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
255536723406 Triose phosphate/phosphate translocator, 0.898 0.997 0.772 0.0
224077056408 predicted protein [Populus trichocarpa] 0.895 0.990 0.764 0.0
224125582408 predicted protein [Populus trichocarpa] 0.900 0.995 0.766 0.0
225443598406 PREDICTED: triose phosphate/phosphate tr 0.898 0.997 0.765 0.0
147834373443 hypothetical protein VITISV_028555 [Viti 0.886 0.902 0.767 0.0
356521410429 PREDICTED: LOW QUALITY PROTEIN: triose p 0.895 0.941 0.737 0.0
356548666406 PREDICTED: triose phosphate/phosphate tr 0.891 0.990 0.745 0.0
449433798411 PREDICTED: triose phosphate/phosphate tr 0.898 0.985 0.728 0.0
9295273404 triose phosphate/phosphate translocator 0.880 0.982 0.718 1e-178
21593093410 phosphate/triose-phosphate translocator 0.898 0.987 0.723 1e-178
>gi|255536723|ref|XP_002509428.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis] gi|223549327|gb|EEF50815.1| Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/452 (77%), Positives = 376/452 (83%), Gaps = 47/452 (10%)

Query: 1   MESRVLSRATTTTTTISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLE 60
           MESRVLSRATTT +++  LRR P+      SF+S+KPIG VGEGGN+IWGRQLRP+LLLE
Sbjct: 1   MESRVLSRATTTLSSLPHLRR-PMRESNTTSFVSMKPIGTVGEGGNLIWGRQLRPSLLLE 59

Query: 61  SSNAPAGLFAGKKEILRPILATASSPAEGSDSAGE-AAPVRFFDRYPALVTGFFFFMWYF 119
           SS A       K+E LRP +A ASSPAEGSDS+G+  APV FF++YPALVTGFFFFMWYF
Sbjct: 60  SSPA------TKRENLRPTMAAASSPAEGSDSSGDKVAPVGFFEKYPALVTGFFFFMWYF 113

Query: 120 LNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVA 179
           LNVIFNILNK+IYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDS LLKLLIPVA
Sbjct: 114 LNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSNLLKLLIPVA 173

Query: 180 VCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYW 239
           VCHALGHVTSNVSFAAVAVSFTHTIK                                  
Sbjct: 174 VCHALGHVTSNVSFAAVAVSFTHTIK---------------------------------- 199

Query: 240 FYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMIS 299
                ALEPFFNAAASQFILGQ +P+TLWLSLAPVVIGVSMASLTELSFNW GFISAMIS
Sbjct: 200 -----ALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWIGFISAMIS 254

Query: 300 NISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVG 359
           NISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAII EGPQL+K+G +DAI+KVG
Sbjct: 255 NISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIFEGPQLMKYGFNDAIAKVG 314

Query: 360 MVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQ 419
             KFI+DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ
Sbjct: 315 TTKFITDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQ 374

Query: 420 TGIGTVIAIAGVAAYSYIKAQMEEEKRQMKAA 451
           TGIGT IAIAGVA YS++KA++EEEKRQ K A
Sbjct: 375 TGIGTCIAIAGVAMYSFLKAKIEEEKRQGKTA 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077056|ref|XP_002305112.1| predicted protein [Populus trichocarpa] gi|222848076|gb|EEE85623.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125582|ref|XP_002329840.1| predicted protein [Populus trichocarpa] gi|222870902|gb|EEF08033.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225443598|ref|XP_002278829.1| PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic [Vitis vinifera] gi|297740430|emb|CBI30612.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147834373|emb|CAN65381.1| hypothetical protein VITISV_028555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356521410|ref|XP_003529349.1| PREDICTED: LOW QUALITY PROTEIN: triose phosphate/phosphate translocator, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356548666|ref|XP_003542721.1| PREDICTED: triose phosphate/phosphate translocator, chloroplastic [Glycine max] Back     alignment and taxonomy information
>gi|449433798|ref|XP_004134684.1| PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|9295273|gb|AAF86906.1|AF223358_1 triose phosphate/phosphate translocator precursor [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|21593093|gb|AAM65042.1| phosphate/triose-phosphate translocator precursor [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
TAIR|locus:2161423415 APE2 "ACCLIMATION OF PHOTOSYNT 0.447 0.486 0.826 3.3e-158
TAIR|locus:2160175388 GPT1 "glucose 6-phosphate/phos 0.416 0.484 0.395 3.3e-59
TAIR|locus:2036778388 GPT2 "glucose-6-phosphate/phos 0.416 0.484 0.395 1.4e-58
TAIR|locus:2151381417 AT5G17630 "AT5G17630" [Arabido 0.441 0.477 0.382 6.9e-57
UNIPROTKB|Q84QU8407 PPT2 "Phosphoenolpyruvate/phos 0.461 0.511 0.374 1.3e-51
UNIPROTKB|Q69VR7408 PPT1 "Phosphoenolpyruvate/phos 0.465 0.514 0.336 1.3e-49
TAIR|locus:2084203383 PPT2 "phosphoenolpyruvate (pep 0.472 0.556 0.368 1.6e-47
TAIR|locus:2145944408 CUE1 "CAB UNDEREXPRESSED 1" [A 0.461 0.509 0.315 2.2e-42
UNIPROTKB|Q5VQL3393 PPT3 "Phosphoenolpyruvate/phos 0.465 0.534 0.327 7.1e-41
GENEDB_PFALCIPARUM|PFE0410w342 PFE0410w "triose or hexose pho 0.436 0.576 0.318 4.4e-38
TAIR|locus:2161423 APE2 "ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 864 (309.2 bits), Expect = 3.3e-158, Sum P(2) = 3.3e-158
 Identities = 167/202 (82%), Positives = 181/202 (89%)

Query:   245 ALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFT 304
             ALEPFFNAAASQFI+GQ +P+TLWLSLAPVV+GV+MASLTELSFNW GFISAMISNISFT
Sbjct:   204 ALEPFFNAAASQFIMGQSIPITLWLSLAPVVLGVAMASLTELSFNWLGFISAMISNISFT 263

Query:   305 YRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFI 364
             YRSI+SKKAMTDMDSTN+YAYISIIALFVCIPPAIIVEGP+L+ HG +DAI+KVGM KFI
Sbjct:   264 YRSIFSKKAMTDMDSTNVYAYISIIALFVCIPPAIIVEGPKLLNHGFADAIAKVGMTKFI 323

Query:   365 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXX 424
             SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ     
Sbjct:   324 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGT 383

Query:   425 XXXXXXXXXYSYIKAQMEEEKR 446
                      YS IKA++EEEKR
Sbjct:   384 GIAIAGVAMYSIIKAKIEEEKR 405
GO:0005215 "transporter activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0015297 "antiporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA
GO:0015713 "phosphoglycerate transport" evidence=IDA
GO:0015717 "triose phosphate transport" evidence=IMP
GO:0035436 "triose phosphate transmembrane transport" evidence=IDA
GO:0071917 "triose-phosphate transmembrane transporter activity" evidence=IMP;IDA
GO:0009643 "photosynthetic acclimation" evidence=IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
TAIR|locus:2160175 GPT1 "glucose 6-phosphate/phosphate translocator 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036778 GPT2 "glucose-6-phosphate/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151381 AT5G17630 "AT5G17630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84QU8 PPT2 "Phosphoenolpyruvate/phosphate translocator 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VR7 PPT1 "Phosphoenolpyruvate/phosphate translocator 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2084203 PPT2 "phosphoenolpyruvate (pep)/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145944 CUE1 "CAB UNDEREXPRESSED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VQL3 PPT3 "Phosphoenolpyruvate/phosphate translocator 3, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE0410w PFE0410w "triose or hexose phosphate / phosphate translocator, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P11869TPT_SPIOLNo assigned EC number0.69820.88470.9876N/Ano
Q9ZSR7TPT_ARATHNo assigned EC number0.72140.89800.9878yesno
P29463TPT_SOLTUNo assigned EC number0.66520.89130.9710N/Ano
P52177TPT1_BRAOBNo assigned EC number0.70740.88690.9828N/Ano
P21727TPT_PEANo assigned EC number0.72080.88240.9900N/Ano
P49131TPT_FLAPRNo assigned EC number0.69970.90020.9950N/Ano
P49133TPT_MAIZENo assigned EC number0.69540.82030.9046N/Ano
P49132TPT_FLATRNo assigned EC number0.68870.89800.9950N/Ano
Q9FTT3TPT_ORYSJNo assigned EC number0.70360.79820.8633yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
TIGR00817302 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate 1e-139
PTZ00343350 PTZ00343, PTZ00343, triose or hexose phosphate/pho 4e-62
pfam03151149 pfam03151, TPT, Triose-phosphate Transporter famil 7e-34
>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information 
 Score =  400 bits (1029), Expect = e-139
 Identities = 182/341 (53%), Positives = 219/341 (64%), Gaps = 42/341 (12%)

Query: 108 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPI 167
           L TG  F +WYFLNV FNI NK++ N FPYPYF ++I L VG +YCL+SW+ GLPKR  I
Sbjct: 1   LQTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKI 60

Query: 168 DSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLL 227
            S LLKLL+PVA+ H +GHVTSNVS + VAVSFTHTIK                      
Sbjct: 61  SSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK---------------------- 98

Query: 228 YTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS 287
                            A+EPFF+   S F LGQ+ P TLWLSL P+V GV++AS TELS
Sbjct: 99  -----------------AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELS 141

Query: 288 FNWTGFISAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQ 345
           FNW GF+SAMISNI+F  R+I+SKKAMT   +D TN+YAYISI++LF+  PPA I EGP 
Sbjct: 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPP 201

Query: 346 LIKHGLSDAISKVGMVKFISDLFWVGM-FYHLYNQLATNTLERVAPLTHAVGNVLKRVFV 404
            + HG   AIS V + K  +      M F+H Y Q+A   L RV+PLTH+VGN +KRV V
Sbjct: 202 FLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVV 261

Query: 405 IGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEK 445
           I  SIL FG KIS Q   GT IAIAGV  YS +KAQ  + K
Sbjct: 262 IVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKPK 302

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302
>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 451
PTZ00343350 triose or hexose phosphate/phosphate translocator; 100.0
TIGR00817302 tpt Tpt phosphate/phosphoenolpyruvate translocator 100.0
KOG1441316 consensus Glucose-6-phosphate/phosphate and phosph 100.0
KOG1443349 consensus Predicted integral membrane protein [Fun 99.96
PF08449303 UAA: UAA transporter family; InterPro: IPR013657 T 99.95
KOG1444314 consensus Nucleotide-sugar transporter VRG4/SQV-7 99.93
PLN00411358 nodulin MtN21 family protein; Provisional 99.93
PRK11689295 aromatic amino acid exporter; Provisional 99.91
PRK11272292 putative DMT superfamily transporter inner membran 99.91
KOG1442347 consensus GDP-fucose transporter [Carbohydrate tra 99.9
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 99.9
PRK10532293 threonine and homoserine efflux system; Provisiona 99.89
PRK11453299 O-acetylserine/cysteine export protein; Provisiona 99.89
KOG1581327 consensus UDP-galactose transporter related protei 99.87
PF06027334 DUF914: Eukaryotic protein of unknown function (DU 99.87
PRK15430296 putative chloramphenical resistance permease RarD; 99.87
KOG1580337 consensus UDP-galactose transporter related protei 99.83
COG5070309 VRG4 Nucleotide-sugar transporter [Carbohydrate tr 99.8
TIGR03340281 phn_DUF6 phosphonate utilization associated putati 99.8
COG0697292 RhaT Permeases of the drug/metabolite transporter 99.77
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 99.73
KOG1582367 consensus UDP-galactose transporter related protei 99.7
TIGR00688256 rarD rarD protein. This uncharacterized protein is 99.69
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 99.65
KOG1583330 consensus UDP-N-acetylglucosamine transporter [Car 99.62
TIGR00776290 RhaT RhaT L-rhamnose-proton symporter family prote 99.61
KOG4510346 consensus Permease of the drug/metabolite transpor 99.61
PF04142244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 99.53
KOG2765416 consensus Predicted membrane protein [Function unk 99.48
KOG2234345 consensus Predicted UDP-galactose transporter [Car 99.42
COG2962293 RarD Predicted permeases [General function predict 99.42
KOG3912372 consensus Predicted integral membrane protein [Gen 99.37
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 99.06
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 99.0
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 98.89
KOG2766336 consensus Predicted membrane protein [Function unk 98.86
PF06800269 Sugar_transport: Sugar transport protein; InterPro 98.84
COG2510140 Predicted membrane protein [Function unknown] 98.76
PRK15430 296 putative chloramphenical resistance permease RarD; 98.66
KOG4314290 consensus Predicted carbohydrate/phosphate translo 98.62
TIGR00688256 rarD rarD protein. This uncharacterized protein is 98.62
PF13536113 EmrE: Multidrug resistance efflux transporter 98.58
COG2510140 Predicted membrane protein [Function unknown] 98.52
TIGR03340 281 phn_DUF6 phosphonate utilization associated putati 98.46
PLN00411 358 nodulin MtN21 family protein; Provisional 98.35
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 98.27
PRK10532293 threonine and homoserine efflux system; Provisiona 97.97
PRK13499345 rhamnose-proton symporter; Provisional 97.96
PRK11689 295 aromatic amino acid exporter; Provisional 97.95
PRK11272 292 putative DMT superfamily transporter inner membran 97.93
PTZ00343 350 triose or hexose phosphate/phosphate translocator; 97.89
PRK11453 299 O-acetylserine/cysteine export protein; Provisiona 97.88
COG2962 293 RarD Predicted permeases [General function predict 97.87
PF05653300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 97.86
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.86
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.78
TIGR00817 302 tpt Tpt phosphate/phosphoenolpyruvate translocator 97.71
PF13536113 EmrE: Multidrug resistance efflux transporter 97.45
TIGR00776 290 RhaT RhaT L-rhamnose-proton symporter family prote 97.37
COG0697292 RhaT Permeases of the drug/metabolite transporter 97.25
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 97.25
PF08449 303 UAA: UAA transporter family; InterPro: IPR013657 T 96.93
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 96.87
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 96.75
KOG2922335 consensus Uncharacterized conserved protein [Funct 96.69
COG4975288 GlcU Putative glucose uptake permease [Carbohydrat 96.68
PF04142 244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 96.61
PRK13499 345 rhamnose-proton symporter; Provisional 96.46
PRK10452120 multidrug efflux system protein MdtJ; Provisional 96.4
PRK11431105 multidrug efflux system protein; Provisional 96.35
PRK10650109 multidrug efflux system protein MdtI; Provisional 96.19
PRK09541110 emrE multidrug efflux protein; Reviewed 96.19
PF06027 334 DUF914: Eukaryotic protein of unknown function (DU 96.13
COG2076106 EmrE Membrane transporters of cations and cationic 96.12
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 96.08
PRK10452120 multidrug efflux system protein MdtJ; Provisional 95.88
PRK10650109 multidrug efflux system protein MdtI; Provisional 95.86
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 95.72
PRK09541110 emrE multidrug efflux protein; Reviewed 95.35
COG2076106 EmrE Membrane transporters of cations and cationic 95.27
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 95.15
PRK11431105 multidrug efflux system protein; Provisional 94.94
KOG2234 345 consensus Predicted UDP-galactose transporter [Car 94.57
PF07857 254 DUF1632: CEO family (DUF1632); InterPro: IPR012435 94.22
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 94.18
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 93.78
PF05653 300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 93.59
PF06800269 Sugar_transport: Sugar transport protein; InterPro 93.11
PF06379 344 RhaT: L-rhamnose-proton symport protein (RhaT); In 91.75
COG3238150 Uncharacterized protein conserved in bacteria [Fun 91.03
KOG1581327 consensus UDP-galactose transporter related protei 90.28
KOG4510 346 consensus Permease of the drug/metabolite transpor 89.99
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 89.67
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 87.99
COG3238150 Uncharacterized protein conserved in bacteria [Fun 87.44
KOG2765 416 consensus Predicted membrane protein [Function unk 86.18
KOG4314 290 consensus Predicted carbohydrate/phosphate translo 83.63
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-39  Score=327.53  Aligned_cols=293  Identities=37%  Similarity=0.632  Sum_probs=255.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHHHHH
Q 013023          106 PALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPID--SKLLKLLIPVAVCHA  183 (451)
Q Consensus       106 ~~l~~~~~~~~w~~~~~~~~i~nK~ll~~f~~P~~lt~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~  183 (451)
                      ..+++..+|+.||++|...+++||++++.+|+|++++++|++++++++.+.|..+.+++++.+  +++++.++|.|+++.
T Consensus        46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         46 FKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999998887777766555444443  457899999999999


Q ss_pred             HHHHHHHHhhhchhHhHHHHhhhchhcccccCchhHHHHHhHhhhhhhhhHHHHHHhhhccchhHHHHHHHHHHHhCccc
Q 013023          184 LGHVTSNVSFAAVAVSFTHTIKGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQL  263 (451)
Q Consensus       184 ~~~~~~~~sl~~vsvs~~~~ik~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lf~l~Pvf~~lls~~~l~ek~  263 (451)
                      ..+...+.|++++++++++++|                                       +++|+|++++++++++||+
T Consensus       126 ~~~~~~~~sl~~~svs~~~iik---------------------------------------a~~Pvft~lls~~~l~ek~  166 (350)
T PTZ00343        126 FVHFGAVISMGLGAVSFTHVVK---------------------------------------AAEPVFTALLSILFLKQFL  166 (350)
T ss_pred             HHHHHHHHHHhhccHHHHHHHH---------------------------------------HhhHHHHHHHHHHHhCCCc
Confidence            8888899999999999999999                                       9999999999999999999


Q ss_pred             ChhHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHHHH
Q 013023          264 PLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTD-------MDSTNIYAYISIIALFVCIP  336 (451)
Q Consensus       264 ~~~~~lsl~~~~~Gv~l~~~~~~~~~~~G~~l~l~s~l~~al~~v~~kk~~~~-------~~~~~l~~~~~~~s~l~llp  336 (451)
                      +++++++++++++|+.+++.+|.++++.|++++++|++++++++++.||.+++       +++.+++.++.+++.++++|
T Consensus       167 s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp  246 (350)
T PTZ00343        167 NLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLP  246 (350)
T ss_pred             cHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999898999999999999999999999999998864       56778888889999999999


Q ss_pred             HHHHhhchhhhhcchhh---hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHhC
Q 013023          337 PAIIVEGPQLIKHGLSD---AISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFG  413 (451)
Q Consensus       337 ~al~~e~~~~~~~~~~~---~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~l~~~s~lt~sv~~~lk~v~~i~ls~i~fg  413 (451)
                      +....|++.... .+.+   ..........+..++..+++++++|...|..+++++|+++++.+++||++++++|+++||
T Consensus       247 ~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~g  325 (350)
T PTZ00343        247 LVLFFEGKKWVP-VWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQ  325 (350)
T ss_pred             HHHHHhhHHHHH-HHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhC
Confidence            988777653211 1111   011111223344567789999999999999999999999999999999999999999999


Q ss_pred             CcCchhhHHHHHHHHHHHHHHHhhh
Q 013023          414 NKISTQTGIGTVIAIAGVAAYSYIK  438 (451)
Q Consensus       414 e~ls~~~iiG~~lii~Gv~ly~~~~  438 (451)
                      |++|..+++|.++++.|+++|++.|
T Consensus       326 e~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        326 TQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             CCCchHhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999764

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>KOG1443 consensus Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>KOG3912 consensus Predicted integral membrane protein [General function prediction only] Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>KOG2766 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>KOG2922 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 78/491 (15%), Positives = 140/491 (28%), Gaps = 136/491 (27%)

Query: 16  ISSLRRSPLENHQNVSFISLKPIGAVGEG-------------------GNVIW---GRQL 53
              LR++ L   +    + +   G +G G                     + W       
Sbjct: 137 YLKLRQA-LLELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 54  RPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFF 113
            P  +LE              +L+ +L                  +R       L     
Sbjct: 194 SPETVLE--------------MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR--L 237

Query: 114 FFMWYFLN---VIFNILNKRIYNYFPYP-------YFVSVIHLLVGVVYC---LVSWAVG 160
                + N   V+ N+ N + +N F           F  V   L         L   ++ 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 161 LPKRAPIDSK--LLKLL------IPVAVC--HALGHVTSNVS-FAAVAVSFTHTIKGEIW 209
           L      + K  LLK L      +P  V   +        +S  A        T     W
Sbjct: 298 LTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRR-----LSIIAESIRDGLATWDN--W 347

Query: 210 HYADQGENHFILSMSL-LLYTSQLNLFFIYWFYFFSALEPFFNAAASQFILGQQLPLTLW 268
            + +  +   I+  SL +L  ++    F     F     P      S  I    L L +W
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-----P-----PSAHIPTILLSL-IW 396

Query: 269 LSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYR--SIYSKKAMTDMDSTNIYAYI 326
             +    + V +  L + S                T    SIY +  +   +   ++   
Sbjct: 397 FDVIKSDVMVVVNKLHKYSL-------VEKQPKESTISIPSIYLELKVKLENEYALHR-- 447

Query: 327 SIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFW-VGMFYHLYNQLATNTL 385
                        IV+   + K   SD +    + ++    +  +G  +HL N       
Sbjct: 448 ------------SIVDHYNIPKTFDSDDLIPPYLDQYF---YSHIG--HHLKN---IEHP 487

Query: 386 ERVAPLTHAVGNVLKRVFVIGFSILAFGNKI----STQTGIGTVIA-IAGVAAY-SYIKA 439
           ER+         + + VF+  F  L    KI    +     G+++  +  +  Y  YI  
Sbjct: 488 ERM--------TLFRMVFL-DFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 440 QMEEEKRQMKA 450
              + +R + A
Sbjct: 537 NDPKYERLVNA 547

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 97.85
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 97.75
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 97.67
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 97.24
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure
Probab=97.85  E-value=0.00012  Score=61.62  Aligned_cols=71  Identities=15%  Similarity=0.211  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhchhHhHHHHh-hhchhcccccCchhHHHHHhHhhhhhhhhHHHHHHhhhccchhHHHHHHH
Q 013023          176 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KGEIWHYADQGENHFILSMSLLLYTSQLNLFFIYWFYFFSALEPFFNAAA  254 (451)
Q Consensus       176 ~~~~l~~~~~~~~~~~sl~~vsvs~~~~i-k~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lf~l~Pvf~~ll  254 (451)
                      +...+++.....+...++++.+++.+..+ .                                       .+.|++++++
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~---------------------------------------g~~~v~~~l~   74 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWS---------------------------------------GVGIVLISLL   74 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHh---------------------------------------hHHHHHHHHH
Confidence            34445667788889999999999998877 6                                       8999999999


Q ss_pred             HHHHhCcccChhHHHHHHHHHHHhhhhcccc
Q 013023          255 SQFILGQQLPLTLWLSLAPVVIGVSMASLTE  285 (451)
Q Consensus       255 s~~~l~ek~~~~~~lsl~~~~~Gv~l~~~~~  285 (451)
                      ++++++|++++.++++++++++|+.++...+
T Consensus        75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           75 SWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999886644
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00