Citrus Sinensis ID: 013033

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
Protein Sequence
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Secondary Structure (PSIPRED)
ccccHHcccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHEEccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MPDNRQVKSNAVANQSADNIEEAIWRLKihdnqegggvaqaspyparpgepdclfyrrtglcgygsncrfnhpayaaQGAQYreelperngqpdcgyylktgtckygstckyhhpkdrngagpvsfnilglpmrqdekscpyymrtgsckfgvackfhhpqpsslgtalpltgnaslgsmgssvlpssglqyagslptwslqrapylssrlqgtqsymplivspsqgivpapgwntymgnigplsptsiagsnliyssrnqgdlgaGAQMHILSassqnlperpdqpdcryymntgtckygadckfhhpkeriaqsaasnigplglpsrpgqaicsnysmygickfgptcrfdhpyagypinyglslpplsildsslmnhqaisathsietspdasskipnwvqnsdavsvqhqnpdmknsttknsddsskvdhpphsvpncsepphdqsn
Flexible Loop (DISEMBL)
mpdnrqvksnavanqsadNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHpphsvpncsepphdqsn
Low Complexity Region (SEG)
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGlslpplsildsslMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Disordered region (IsUnstruct)
*********************EAIWRLKIH********************PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYR********QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHH*******************************QYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIY********************************CRYYMNTGTCKYGADCKFHHPKE*I**********L*****PGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSL**************************************************************************
Disordered Region (DISOPRED)
***************************************************DCLFYRRTGLCGYGSNCRFNH*****************NGQPDCGYYLKTGTCKYGSTCKYHHPKDR****PV***ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTG*****************************************************GIVPAPGWNTYMGNIG***************************************ERPDQPDCRYYMNTGTCKY******************************GQAICSNYSMYGICKFGPTCRFD**************************************************************************************************
Disordered Region (DISEMBL)
*************NQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISAT***********KIPNWVQNSDA*******************************************
Disordered Region (DISPRO)
**********************************************RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAA******EELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP*************************************TWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP***************************************RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG*********************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	451	2.2.26 [Sep-21-2011]
Q94AD9	404	Zinc finger CCCH domain-c	yes	no	0.851	0.950	0.482	1e-105
O48772	453	Zinc finger CCCH domain-c	no	no	0.884	0.880	0.429	6e-90
Q2R4J4	444	Zinc finger CCCH domain-c	yes	no	0.829	0.842	0.451	5e-87
Q9SWF9	417	Zinc finger CCCH domain-c	N/A	no	0.733	0.793	0.459	9e-86
Q2QT65	454	Zinc finger CCCH domain-c	no	no	0.760	0.755	0.439	2e-82
Q5JLB5	439	Zinc finger CCCH domain-c	no	no	0.720	0.740	0.440	1e-81
Q8GXX7	397	Zinc finger CCCH domain-c	no	no	0.771	0.876	0.394	3e-76
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.707	0.681	0.404	7e-71
Q8L7N8	375	Zinc finger CCCH domain-c	no	no	0.760	0.914	0.380	7e-67
Q6NPN3	465	Zinc finger CCCH domain-c	no	no	0.736	0.713	0.406	1e-66

>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis thaliana GN=At1g04990 PE=2 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/437 (48%), Positives = 268/437 (61%), Gaps = 53/437 (12%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct: 5   MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
           LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct: 61  LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query: 120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGS 179
           GA PV FN++GLPMR  EK CPYY+RTG+C+FGVACKFHHPQP           N    +
Sbjct: 121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPD----------NGHSTA 170

Query: 180 MGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
            G S  P++ L+YA  L   S         R Q  QSY+P++VSPSQG +P  GW  YM 
Sbjct: 171 YGMSSFPAADLRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM- 226

Query: 240 NIGPLSPTSIAGSNLIYSSRNQGDL-GAGAQMHILSASSQNLPERPDQPDCRYYMNTGTC 298
                     A SN +Y+ +NQ    G+ A M +  A ++ L E  DQP+CR++MNTGTC
Sbjct: 227 ----------AASNSMYNVKNQPYYSGSSASMAMAVALNRGLSESSDQPECRFFMNTGTC 276

Query: 299 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 358
           KYG DCK+ HP  RI+Q   S I P  LP+RPGQ  C N+  YG CKFGP C+FDHP   
Sbjct: 277 KYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHPMLP 336

Query: 359 YP-INYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPD 417
           YP +    SLP  +   S +  HQ IS T             PN    SD+ S+ +  PD
Sbjct: 337 YPGLTMATSLP--TPFASPVTTHQRISPT-------------PN---RSDSKSLSNGKPD 378

Query: 418 MKNSTTKNSDDSSKVDH 434
           +K    K S ++ K D+
Sbjct: 379 VK----KESSETEKPDN 391

Possesses RNA-binding and ribonuclease activities in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis thaliana GN=ZFN2 PE=2 SV=1

 Score =  331 bits (849), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 200/466 (42%), Positives = 270/466 (57%), Gaps = 67/466 (14%)

Query: 5   RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
           +QV+++  + +S D IE+   R+K++++     + Q+SPYP RPGE DC F+ RTG CGY
Sbjct: 6   QQVQNSTGSIRSPDKIEDTFRRMKVNED----NMEQSSPYPDRPGERDCQFFLRTGQCGY 61

Query: 65  GSNCRFNHP-AYAAQGA-QYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG 122
           G++CR+NHP     QG   YR++LPER GQPDC    +TG CKYG TCKYHHPKDRNGAG
Sbjct: 62  GNSCRYNHPLTNLPQGIIYYRDQLPERVGQPDC----ETGACKYGPTCKYHHPKDRNGAG 117

Query: 123 PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGS 182
           PV FN+LGLPMRQ EK CPYYM+TG C+FGVACKFHHP P S     P  G+++      
Sbjct: 118 PVLFNVLGLPMRQGEKPCPYYMQTGLCRFGVACKFHHPHPHS----QPSNGHSAY---AM 170

Query: 183 SVLPSSGLQYAGSLPTWSLQRAPYLS---SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
           S  PS G  YA  +   SL  A Y +    ++  +Q+YMP +V+PSQG++P  GW TYM 
Sbjct: 171 SSFPSVGFPYASGMTMVSLPPATYGAIPRPQVPQSQAYMPYMVAPSQGLLPPQGWATYM- 229

Query: 240 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 299
                       SN IY+ + Q D  + A + +   S  +     ++ +CR++MNTGTCK
Sbjct: 230 ----------TASNPIYNMKTQLDSSSSASVAVTVTSHHH--SFSERAECRFFMNTGTCK 277

Query: 300 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH----- 354
           YG DCK+ HPKER+ QS  + + P+ LP+RPGQ  C N+  YG CKFG  C+FDH     
Sbjct: 278 YGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDHSMLLN 337

Query: 355 --------------PYAGYP---INYGLSLPPLSILDSSLMNHQ-AISATHSIETSP-DA 395
                         PY   P    N  +S PP     ++L N + A +   S+ET   D 
Sbjct: 338 PYNNTGLAMSSLPTPYPYAPPVSTNLRISSPPSPSDMTTLSNGKPAAAEAQSLETEKQDD 397

Query: 396 SSKIPNWVQ--------NSDAVSVQHQNPDMKNSTTKNSDDSSKVD 433
           S   P   +         SD+ S+ +  PD +  T K  DDS+++D
Sbjct: 398 SPTEPEKSEVEDSLPPNGSDSTSLPNDKPDAE--TEKQDDDSAELD 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2

 Score =  322 bits (824), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 187/414 (45%), Positives = 242/414 (58%), Gaps = 40/414 (9%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
           EEA+W++ + +  E G      PYP R GEPDC +Y RTGLC +G  C+FNHPA    A 
Sbjct: 36  EEAMWQMNLGEAMEAG------PYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAV 89

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ + E P+R GQP+C YYLKTGTCK+G+TCK+HHP+++   A  V  N LG P+R +
Sbjct: 90  AAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPN 149

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           EK C YY+RTG CKFG  CKFHHPQPS+   A+      S+ S G SV   S   Y G++
Sbjct: 150 EKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAV----RGSVYSPGQSVTSPSQHTYPGAV 205

Query: 197 PTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP----TSIA 250
             W L R A +++S R  G  SY  +IV P  G+V  PGWN Y   IG  S      +  
Sbjct: 206 TNWPLSRSASFIASPRWPGHSSYAQVIVPP--GLVQVPGWNPYAAQIGSSSSDDQQRTAG 263

Query: 251 GSNLIYSSR-----NQGDLG------AGAQ-MHILSASSQNL-PERPDQPDCRYYMNTGT 297
           G+     SR     N GD G      AG+  + + +   +++ PERPDQP+C++YM TG 
Sbjct: 264 GAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGD 323

Query: 298 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357
           CK+GA CKFHHPKERI  +    +  LGLP RPG+ IC+ YS YGICKFGP C+FDHP  
Sbjct: 324 CKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMG 383

Query: 358 GYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV 411
              + YGL+  P    D S     A    HS E SPD  S     + +SD+  +
Sbjct: 384 T--VMYGLATSPTG--DVSARRMLAPVPAHS-EVSPDNVSGRSRRITHSDSQQI 432

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1

 Score =  317 bits (813), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 166/361 (45%), Positives = 225/361 (62%), Gaps = 30/361 (8%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           +EA+W++ +  ++      ++ PYP  PGEPDC +Y RTGLC +G+ CRFNHP     A 
Sbjct: 8   QEAMWQMNLRSSE----TMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAI 63

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ + E PER GQP+C YYLKTGTCK+G+TC++HHPKD+ G AG V+ NILG P+R +
Sbjct: 64  ATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPN 123

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           E    YY+RTG CKFG  CKFHHPQPS++   L + G+    ++ S   P     YA  +
Sbjct: 124 ESERAYYLRTGQCKFGNTCKFHHPQPSNM--VLSMRGSTVYPTVQSPTTPGQ-QSYAAGI 180

Query: 197 PTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLI 255
             WS   + Y+ S R QG  SY PLI+   QG+V  PGW+TY G +G  SP     ++  
Sbjct: 181 TNWS--SSSYVPSPRWQGPSSYAPLILP--QGVVSVPGWSTYGGQMGSESPQQTMRNDQT 236

Query: 256 YSSRNQGDL-GAGAQ------------MHILSASSQNL-PERPDQPDCRYYMNTGTCKYG 301
           Y + +QG+L  AG Q            +   +    N+ PERPDQP+C++YM TG CK+G
Sbjct: 237 YGTSHQGELENAGLQGAYSQYRSGSVPVGFYALQRDNIFPERPDQPECQFYMKTGDCKFG 296

Query: 302 ADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPI 361
           A C+FHHP+ER   +    + P+GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  
Sbjct: 297 AVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTY 356

Query: 362 N 362
           N
Sbjct: 357 N 357

Pisum sativum (taxid: 3888)

>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1

 Score =  306 bits (784), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/387 (43%), Positives = 225/387 (58%), Gaps = 44/387 (11%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           EEA+W++ +     GG   +++PYP R GEPDC +Y RTGLC +G  C+FNHP     A 
Sbjct: 44  EEAMWQMTL----GGGESMESTPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAV 99

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+   E P R GQP+C YYLKTGTCK+G+TCK+HHP+++   A  V  N+LG PMR +
Sbjct: 100 AAARMNGEYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPN 159

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           EK C YY+RTG CKF   CKFHHPQPS+   A+      S+ S G S        Y G++
Sbjct: 160 EKECAYYLRTGQCKFASTCKFHHPQPSNTMVAV----RNSMYSPGQSATSPGQHTYPGAV 215

Query: 197 PTWSLQR-APYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSP-------- 246
             W+L R A +++S R  G   Y  +IV   QG+V  PGWN Y   +G  SP        
Sbjct: 216 TNWTLSRSASFIASPRWPGHSGYAQVIVP--QGLVQVPGWNPYAAQMGSSSPDDQQRTPV 273

Query: 247 -----------TSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNL-PERPDQPDCRYYMN 294
                      T   G + +Y S   G +  G    + +   +N+ PERPDQP+C++YM 
Sbjct: 274 TTQYYGSRQSETGGMGDHGMYQSYQGGSVPVG----VYTVQGENIFPERPDQPECQFYMK 329

Query: 295 TGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
           TG CK+GA CKFHHPKER+  +    +  LGLP RPG+ +C+ YS YGICKFGP C+FDH
Sbjct: 330 TGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDH 389

Query: 355 PYAGYPINYGLSLPPLSILDSSLMNHQ 381
           P     + YG +  P    D S M++Q
Sbjct: 390 PMG--TLMYGSATSPRG--DVSSMHYQ 412

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2

 Score =  304 bits (778), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 162/368 (44%), Positives = 210/368 (57%), Gaps = 43/368 (11%)

Query: 22  EAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAAQ 78
           E +W+        G G  Q  PYP R GEPDC +Y RTGLC +G +CRFNHP     A  
Sbjct: 58  EGMWQ---QMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIA 114

Query: 79  GAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQDE 137
            A+ + E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG V  N LG P+R  E
Sbjct: 115 SARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSE 174

Query: 138 KSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPS------SGLQ 191
           K C YY++TG CK+G  CKFHHP+            NA   S GS + PS      +G  
Sbjct: 175 KECAYYLKTGQCKYGNTCKFHHPE----------LFNAMASSRGSPIYPSVHSSATAGPP 224

Query: 192 YAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA 250
           Y G++ +W+  R  ++ S R Q   +Y P+IV   QG+V  P WN+Y G + P+S +   
Sbjct: 225 YTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVP--QGLVQVPSWNSYTGQMMPVSSSESR 282

Query: 251 ----GSNLIYSSRNQGDLGAGAQMHILSASSQN-------------LPERPDQPDCRYYM 293
               G+   Y +  Q D  AG Q  +    S +              PERPDQP+C+YYM
Sbjct: 283 LQSPGAQQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYM 342

Query: 294 NTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFD 353
            TG CK+GA CKFHHP+ R   +    + P+GLP RPG+ +C  YS YGICKFG  C+FD
Sbjct: 343 KTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFD 402

Query: 354 HPYAGYPI 361
           HP    P+
Sbjct: 403 HPTMAPPM 410

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1

 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/401 (39%), Positives = 222/401 (55%), Gaps = 53/401 (13%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           ++A+W++ +  ++      +   YP RPGEPDC +Y RTGLC +GS CRFNHP       
Sbjct: 18  QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
             A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct: 74  ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           E  C Y++RTG CKFG  CKF+HPQP      +P +G  S                    
Sbjct: 134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSY------------------- 174

Query: 197 PTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLI 255
             WS  RA +++S R Q   SY  LI+   QG+VP  GWN Y G +G +SP+   G++  
Sbjct: 175 -PWS--RASFIASPRWQDPSSYASLIMP--QGVVPVQGWNPYSGQLGSVSPSG-TGNDQN 228

Query: 256 YSSRNQGDLGAGAQMHILSASSQN------------------LPERPDQPDCRYYMNTGT 297
           Y +  Q +          S S  N                   PERP QP+C++YM TG 
Sbjct: 229 YRNLQQNETIESGSQSQGSFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGD 288

Query: 298 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357
           CK+G  CKFHHP++R A      +  +GLP RPG+ +C  Y+ YGICKFGP+C+FDHP  
Sbjct: 289 CKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMR 348

Query: 358 GYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSK 398
            +  +   S     ++++S    + +S + + + +  +S K
Sbjct: 349 VFTYDNTASETD-EVVETSTGKSRRLSVSETRQAATTSSGK 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score =  268 bits (684), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 142/351 (40%), Positives = 200/351 (56%), Gaps = 32/351 (9%)

Query: 20  IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYA 76
           ++E++WRL +  +           YP RPG PDC +Y RTG+CGYG+ CR+NHP   A  
Sbjct: 28  LQESMWRLGLGSDS----------YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRASV 77

Query: 77  AQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQ 135
               +   + PER G+P C +YLKTGTCK+G++CK+HHPK+  G+   V  NI G P+R+
Sbjct: 78  EATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVRE 137

Query: 136 DEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGS 195
            +  C YY++TG CKFG+ CKFHHPQP+      P            S++P    QY G 
Sbjct: 138 GDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPD---QYGGP 194

Query: 196 LPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP-------- 246
             +  + R     S +QG  +Y P++++P  G+VP PGW+ Y   + P LSP        
Sbjct: 195 SSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGAQHAVGA 250

Query: 247 TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADC 304
           TS+ G   + S+     G   + +    +    Q  PERP +P+C+YY+ TG CK+G  C
Sbjct: 251 TSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSC 310

Query: 305 KFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
           KFHHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct: 311 KFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis thaliana GN=ZFN3 PE=2 SV=2

 Score =  254 bits (650), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 155/407 (38%), Positives = 213/407 (52%), Gaps = 64/407 (15%)

Query: 21  EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
           + A+W++ +  +   G       YP R GEPDC +Y RTGLC +GS CRFNHP       
Sbjct: 19  QNAMWQMNLGSDDTMG---VDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75

Query: 78  QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
             A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G  G VS N+L  P+R +
Sbjct: 76  ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135

Query: 137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
           E  C Y++R G CKFG  CKF+HPQ  S         N  +   GS V   S LQ     
Sbjct: 136 EDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQSLTGQ 185

Query: 197 PTWSLQRAPYLSS--RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL 254
           P++S  R  ++++  RLQ    +     S SQG + + G+++  GN  PL   ++   N+
Sbjct: 186 PSYSWSRTSFVANPPRLQDPSGF----ASGSQGGLFSSGFHS--GNSVPLGFYALPRENV 239

Query: 255 IYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIA 314
                                     PERP QP+C++YM TG CK+G  CKFHHP++R  
Sbjct: 240 -------------------------FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQT 274

Query: 315 QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINYGLSLPPLSILD 374
                 +  +GLP RPG+ +C  YS YGICKFGP+C+FDHP   +  N   + P  S   
Sbjct: 275 PPPDCVLSSVGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPS--- 331

Query: 375 SSLMNHQAIS-------ATHSIETSPDASSKIPNWVQNSDA-VSVQH 413
           SSL    AI+        + S+E  P   + +P      D  V  QH
Sbjct: 332 SSLHQETAITTELRNLLVSSSVEAKP---TSLPETTSAKDTIVDAQH 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1

 Score =  254 bits (649), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/359 (40%), Positives = 201/359 (55%), Gaps = 27/359 (7%)

Query: 13  ANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNH 72
           A  +   IE ++WRL +              +P RP EPDC++Y RTG+CGYGS CRFNH
Sbjct: 22  AQGTETGIEASMWRLGLRGGG-----GGGETFPERPDEPDCIYYLRTGVCGYGSRCRFNH 76

Query: 73  PAYAA--QGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG---AGPVS 125
           P   A   G    E  E PER GQP C ++++TGTCK+G++CKYHHP+   G     PVS
Sbjct: 77  PRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVS 136

Query: 126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVL 185
            N +G P+R  EK C Y+MRTG CKFG  C++HHP P   G   P        S G ++ 
Sbjct: 137 LNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQQQQLSAGPTMY 194

Query: 186 PSSGLQYAGSLPTWSLQRA-PYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIG 242
           PS   Q   S   + +  A P L   S +Q    Y  +++ P  G+VP  GWN Y  ++ 
Sbjct: 195 PSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPP--GMVPYSGWNPYQASVS 252

Query: 243 PL-SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNT 295
            + SP +    G++ +Y     S +     +G     +S   Q  P+RP+QP+C+Y+M T
Sbjct: 253 AMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRPEQPECQYFMRT 312

Query: 296 GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
           G CK+G  C+FHHP E  A   AS +  +GLP RPG   C++++ +GICKFGP C+FDH
Sbjct: 313 GDCKFGTSCRFHHPME-AASPEASTLSHIGLPLRPGAVPCTHFAQHGICKFGPACKFDH 370

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
255576147	456	zinc finger protein, putative [Ricinus c	0.977	0.967	0.716	0.0
224129058	446	predicted protein [Populus trichocarpa]	0.975	0.986	0.696	0.0
225447159	450	PREDICTED: zinc finger CCCH domain-conta	0.991	0.993	0.680	1e-177
224068913	450	predicted protein [Populus trichocarpa]	0.982	0.984	0.683	1e-177
147819907	460	hypothetical protein VITISV_020358 [Viti	0.920	0.902	0.626	1e-156
449450892	430	PREDICTED: zinc finger CCCH domain-conta	0.949	0.995	0.574	1e-140
356554539	417	PREDICTED: zinc finger CCCH domain-conta	0.922	0.997	0.567	1e-134
356501261	415	PREDICTED: zinc finger CCCH domain-conta	0.915	0.995	0.566	1e-134
357493165	422	Zinc finger CCCH domain-containing prote	0.869	0.928	0.598	1e-134
359488091	324	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.645	0.898	0.641	1e-110

>gi|255576147|ref|XP_002528968.1| zinc finger protein, putative [Ricinus communis] gi|223531614|gb|EEF33442.1| zinc finger protein, putative [Ricinus communis]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/448 (71%), Positives = 369/448 (82%), Gaps = 7/448 (1%)

Query: 5   RQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGY 64
           RQVKSNAV+NQS DNIEEAIWRLKIHDNQE GG+A +SPYP RPGEPDC++Y RTGLCGY
Sbjct: 12  RQVKSNAVSNQSPDNIEEAIWRLKIHDNQEQGGMAPSSPYPDRPGEPDCVYYLRTGLCGY 71

Query: 65  GSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPV 124
           G+NCRFNHP YAAQG Q++EELPER GQPDCGYYLKTGTCKYGSTCKYHHP+DRNGAGPV
Sbjct: 72  GNNCRFNHPPYAAQGNQFKEELPERVGQPDCGYYLKTGTCKYGSTCKYHHPRDRNGAGPV 131

Query: 125 SFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSV 184
           SFNI+GLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP+ LGT LP TG A+ G M SS 
Sbjct: 132 SFNIVGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPAPLGTGLPFTGPAASGPMASSN 191

Query: 185 LPSSGLQYAGSLPTWSLQRAPYLSS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP 243
           LPSSGL Y G LPTWSL RAPY+S  RLQG Q+YMP ++SPSQG+V A GWNTY+GN+ P
Sbjct: 192 LPSSGLPYVGGLPTWSLPRAPYVSGPRLQGPQTYMPAVLSPSQGVVAAQGWNTYVGNLSP 251

Query: 244 LSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD 303
           +S  S+ GS+++Y+SRNQ + G+  Q+H+LS +S NLPERPDQP+CRY+MNTGTCKYG+D
Sbjct: 252 MSSGSVLGSSIVYNSRNQSESGSSGQVHMLSTTSSNLPERPDQPECRYFMNTGTCKYGSD 311

Query: 304 CKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYPINY 363
           CK+HHPKERIAQ A ++IGP+GLPSRPGQ ICSNYSMYG+CKFGPTCRFDHP+ GYP  Y
Sbjct: 312 CKYHHPKERIAQLATNSIGPVGLPSRPGQPICSNYSMYGLCKFGPTCRFDHPFTGYPYGY 371

Query: 364 GLSLPPLSILDSSLMNHQAIS-ATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMKNST 422
            LSL PLSI+DSSL+++  +S    S E+    SSK P+WVQN D  S +HQN D     
Sbjct: 372 SLSLQPLSIIDSSLLSYPRMSPPALSSESPISLSSKFPDWVQNPDGASSKHQNSDR---N 428

Query: 423 TKNSDDSSKV--DHPPHSVPNCSEPPHD 448
           TK SDD  +     PPHS    SEP HD
Sbjct: 429 TKISDDQPEQAGSPPPHSSQASSEPSHD 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129058|ref|XP_002320490.1| predicted protein [Populus trichocarpa] gi|222861263|gb|EEE98805.1| predicted protein [Populus trichocarpa]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/454 (69%), Positives = 367/454 (80%), Gaps = 14/454 (3%)

Query: 1   MPD--NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRR 58
           MPD  NRQVKSNAV+NQSA+NIEEAIWRLKIHD+QE GG+AQ+SPYP RPG PDC +Y R
Sbjct: 1   MPDHNNRQVKSNAVSNQSAENIEEAIWRLKIHDHQEQGGMAQSSPYPDRPGAPDCGYYLR 60

Query: 59  TGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
           TGLCGYGSNCRFNHP YAA GAQ REELPER GQPDCGYYLKTGTCKYGSTCKYHHP+DR
Sbjct: 61  TGLCGYGSNCRFNHPVYAALGAQLREELPERVGQPDCGYYLKTGTCKYGSTCKYHHPRDR 120

Query: 119 NGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
           NGAGPVSFN LGLPMRQDEKSCPYYMRT SCKFGVACKFHHPQP+SLGT+  LTG A+ G
Sbjct: 121 NGAGPVSFNALGLPMRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSFSLTGAAAFG 180

Query: 179 SMGSSVLPSSGLQYAGSLPTWSLQRAPYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNTY 237
           S GS ++PSSGL Y G LPTWSL RAP +S + LQG Q+YMP++VSPS GI+P PGWNTY
Sbjct: 181 STGSPIVPSSGLPYVGGLPTWSLPRAPLMSGTNLQGPQAYMPVVVSPSPGIIPVPGWNTY 240

Query: 238 MGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGT 297
           +GN+ P+S +SI GSN  Y SRNQGD G+G Q+H+LS  S  LPERP QP+CR++M+TGT
Sbjct: 241 VGNLNPMSSSSILGSNRAYDSRNQGDSGSGGQVHLLSTVSPILPERPGQPECRHFMSTGT 300

Query: 298 CKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA 357
           CKYG+DCK+HHPKERIAQ A + +G LGLPSRPGQA+C +YSMYGICKFGPTCR+DHP  
Sbjct: 301 CKYGSDCKYHHPKERIAQLATNTMGLLGLPSRPGQAVCPDYSMYGICKFGPTCRYDHPIH 360

Query: 358 GYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV-QHQNP 416
            YP NY LSLP LSI+DSSL+ +  ++     + +P   SK+P+ + N D  S  +HQNP
Sbjct: 361 TYPYNYSLSLPSLSIMDSSLITYPRMA-----QAAPVTLSKLPDLIHNPDGASYNKHQNP 415

Query: 417 DMKNSTTKNSDDSSKV--DHPPHSVPNCSEPPHD 448
           D   ++TK SDD ++     PPHS    SEP HD
Sbjct: 416 D---TSTKISDDPTEQAGSPPPHSSQASSEPSHD 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447159|ref|XP_002275775.1| PREDICTED: zinc finger CCCH domain-containing protein 12 [Vitis vinifera] gi|297739220|emb|CBI28871.3| unnamed protein product [Vitis vinifera]

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/454 (68%), Positives = 367/454 (80%), Gaps = 7/454 (1%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           M DNRQV+SN V+N S++N+EEAI RLKIHDNQE G V  +SPYP RPGEPDC++Y RTG
Sbjct: 1   MLDNRQVQSNGVSNPSSENVEEAILRLKIHDNQEEGSVGHSSPYPDRPGEPDCIYYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           LCGYGSNCRFNHPAY+ QGAQYR ELPER GQPDCGY+LKTGTCKYGSTCKYHHP+DR+G
Sbjct: 61  LCGYGSNCRFNHPAYSEQGAQYRGELPERVGQPDCGYFLKTGTCKYGSTCKYHHPRDRHG 120

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM 180
           AGPVS NI+GLPMRQ+EK C YYMRTG CKFG ACKFHHPQP+S GT LP TG A+ GS 
Sbjct: 121 AGPVSLNIVGLPMRQEEKPCSYYMRTGLCKFGAACKFHHPQPASAGTVLPATGPAAFGST 180

Query: 181 GSSVLPSSGLQYAGSLPTWSLQRAPYL-SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
           GSS+LPSSGL Y G LP WSL RAPY+   R+QG Q+YMP+++SPSQGIVPA GWNTYMG
Sbjct: 181 GSSILPSSGLPYVGGLPAWSLPRAPYIPGPRMQGPQTYMPIVLSPSQGIVPAQGWNTYMG 240

Query: 240 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 299
           N+ P+S T I GSNL+Y+SRNQ + G+  Q+H+LS+   +LPERPDQP+CRY+M+TG+CK
Sbjct: 241 NMSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCK 300

Query: 300 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 359
           YG+DCK+HHPKERIAQ A + +GPLGLP RPGQA+CS+Y++YG+CK+GPTC+FDHP  GY
Sbjct: 301 YGSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGY 360

Query: 360 -PINYGLSLPPLSILDSSLMNHQAISAT-HSIETSPDASSKIPNWVQNSDAVSVQHQNPD 417
              NY LSLPPLSILD SL+ +Q  S+T HS ETSP  SSK P+WVQ +++ S + QNPD
Sbjct: 361 SSYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPD 420

Query: 418 MKNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN 451
            K          S +    HS PN SEPP DQS+
Sbjct: 421 TKAPEGPPEQAGSLL----HSSPNSSEPPQDQSD 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068913|ref|XP_002302855.1| predicted protein [Populus trichocarpa] gi|222844581|gb|EEE82128.1| predicted protein [Populus trichocarpa]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 311/455 (68%), Positives = 362/455 (79%), Gaps = 12/455 (2%)

Query: 1   MPD--NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRR 58
           MPD  NRQVKSNAV+N SADNIEEA WRLKIHD QE GG+AQ+SPYP RPG PDC +Y R
Sbjct: 1   MPDQNNRQVKSNAVSNHSADNIEEAFWRLKIHDPQEQGGMAQSSPYPDRPGVPDCGYYLR 60

Query: 59  TGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR 118
           TGLCGYGSNCR+NHP YAAQG Q REELPER GQPDCGYY+KTGTCKYGSTCKYHHP+DR
Sbjct: 61  TGLCGYGSNCRYNHPIYAAQGTQLREELPERIGQPDCGYYIKTGTCKYGSTCKYHHPRDR 120

Query: 119 NGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLG 178
           NGAGPVSFN LGLPMRQDEKSCPYYMRT SCKFGVACKFHHPQP+SLGT+LPLTG A+ G
Sbjct: 121 NGAGPVSFNALGLPMRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSLPLTGAAAFG 180

Query: 179 SMGSSVLPSSGLQYAGSLPTWSLQRA-PYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNT 236
           S GS ++PSSGL Y G LPTWSL RA PY+S + LQG Q+YMP++VSPSQGIVP PGWNT
Sbjct: 181 STGSPIVPSSGLPYVGGLPTWSLPRAPPYMSGTHLQGPQAYMPVVVSPSQGIVPVPGWNT 240

Query: 237 YMGNIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTG 296
           Y+GN  P+S +SI GSN  Y SRN GD  +G+  H+LS +   LPERPDQP+CR++M++G
Sbjct: 241 YVGNSNPMSSSSILGSNRAYDSRNHGD--SGSSGHLLSTAIPALPERPDQPECRHFMSSG 298

Query: 297 TCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPY 356
           TCKYG+DCK+HHPKERIAQ A + +GP GLP RPGQA+C +YSMYGICKFGPTCR+DHP 
Sbjct: 299 TCKYGSDCKYHHPKERIAQLATNTMGPFGLPLRPGQAVCPDYSMYGICKFGPTCRYDHPL 358

Query: 357 AGYPINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSV-QHQN 415
             YP NY LSLP LS++DSSL+ +  ++       +P + SK+P+ ++N D  S  +HQN
Sbjct: 359 PTYPYNYSLSLPSLSMMDSSLVTYPRMAQAALSSATPVSLSKLPDLIRNPDGASYNKHQN 418

Query: 416 PDMKNSTTKNSDDSSKV--DHPPHSVPNCSEPPHD 448
            D   S TK  DD ++     PPHS    SEP HD
Sbjct: 419 SD---SNTKTLDDPTEHAGSPPPHSSQASSEPSHD 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819907|emb|CAN76191.1| hypothetical protein VITISV_020358 [Vitis vinifera]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/453 (62%), Positives = 338/453 (74%), Gaps = 38/453 (8%)

Query: 33  QEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQ 92
           +E G V  +SPYP RPGEPDC++Y RTGLCGYGSNCRFNHPAY+ QGAQYR ELPER GQ
Sbjct: 12  KEEGSVGHSSPYPDRPGEPDCIYYLRTGLCGYGSNCRFNHPAYSEQGAQYRGELPERVGQ 71

Query: 93  PDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFG 152
           PDCGY+LKTGTCKYGSTCKYHHP+DR+GAGPV  NI+GLPMRQ+EK C YYMRTG CKFG
Sbjct: 72  PDCGYFLKTGTCKYGSTCKYHHPRDRHGAGPVXLNIVGLPMRQEEKPCSYYMRTGLCKFG 131

Query: 153 VACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSS-RL 211
            ACKFHHPQP+S GT LP TG A+ GS GSS+LPSSGL Y G LP WSL RAPY+   R+
Sbjct: 132 AACKFHHPQPASAGTVLPATGPAAFGSTGSSILPSSGLPYVGGLPAWSLPRAPYIPGPRM 191

Query: 212 QGTQSYMPLIVSPSQGIVPAPGWNTYM-------------------------------GN 240
           QG Q+YMP+++SPSQGIVPA GWNTYM                               GN
Sbjct: 192 QGPQTYMPIVLSPSQGIVPAQGWNTYMPHFLVLMKSFHVVNLVYSIDPNEFVICEIPRGN 251

Query: 241 IGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 300
           + P+S T I GSNL+Y+SRNQ + G+  Q+H+LS+   +LPERPDQP+CRY+M+TG+CKY
Sbjct: 252 MSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCKY 311

Query: 301 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY- 359
           G+DCK+HHPKERIAQ A + +GPLGLP RPGQA+CS+Y++YG+CK+GPTC+FDHP  GY 
Sbjct: 312 GSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGYS 371

Query: 360 PINYGLSLPPLSILDSSLMNHQAISAT-HSIETSPDASSKIPNWVQNSDAVSVQHQNPDM 418
             NY LSLPPLSILD SL+ +Q  S+T HS ETSP  SSK P+WVQ +++ S + QNPD 
Sbjct: 372 SYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPDT 431

Query: 419 KNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQSN 451
           K          S +    HS PN SEPP DQS+
Sbjct: 432 KAPEGPPEQAGSLL----HSSPNSSEPPQDQSD 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450892|ref|XP_004143196.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus] gi|449515163|ref|XP_004164619.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Cucumis sativus]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/451 (57%), Positives = 321/451 (71%), Gaps = 23/451 (5%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MPDN QV+ N V NQS D I EA+WRL+I DNQ+GG  A++SPYP RPGEPDCL+Y RTG
Sbjct: 1   MPDNLQVQRNDVPNQSPD-ISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTG 59

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
            C YGSNCRFNHP Y  QGA Y  ELPER GQPDC Y+LKTGTCKYG +CKYHHP+DR G
Sbjct: 60  SCSYGSNCRFNHPVYVGQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRG 119

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM 180
           AGPV+FNILGLPMRQ+EKSCPYY+RTGSCKFGV+CKF+HPQPS +G  LP     +LGS 
Sbjct: 120 AGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNMLPQARPGALGSG 179

Query: 181 GSSVLPSSGLQYAGSLPTWSLQRAPYLSSR-LQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
           G+  +PSSG+ Y    P WS+ R  Y+    +QG QSY+P++VSPSQG + A  WNTY+ 
Sbjct: 180 GTPFMPSSGVPY----PAWSMPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVS 235

Query: 240 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 299
           N+ P+ P      NL Y++ N  D  +  Q+  LS S+  LP+RPDQP+CRY+MN GTCK
Sbjct: 236 NVNPILP------NLGYNNINLEDSYSNGQL-ALSTSTPTLPDRPDQPECRYFMNNGTCK 288

Query: 300 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 359
           YG+DCKFHHPK+RIAQSA +    LGLPSRPGQAICS Y+MYG+CK+GP+C+FDHP   Y
Sbjct: 289 YGSDCKFHHPKQRIAQSATNA---LGLPSRPGQAICSYYNMYGLCKYGPSCKFDHPSPTY 345

Query: 360 PINYGLSLPPLSILDSSLMNHQAISATHSI-ETSPDASSKIPNWVQNSDAVSVQHQNPDM 418
           P NYG +LP   +LDSS++ + + + T S  ET P   SK   WVQ +D  + + +  D 
Sbjct: 346 PYNYGFTLP---LLDSSIIKYPSNNFTMSSHETLPGTVSKSSEWVQKADPSNNKRRTTDS 402

Query: 419 KNSTTKNSDDSSKVDHPPHSVPNCSEPPHDQ 449
           K       ++++ V     S+P  SE   DQ
Sbjct: 403 KVIIDSTGEEATSVS---CSLPGGSESLQDQ 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554539|ref|XP_003545603.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like [Glycine max]

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/449 (56%), Positives = 307/449 (68%), Gaps = 33/449 (7%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA    S+DNIEEAI RLKI+DN +    AQ++ YP RPGEP+CL+Y RTG
Sbjct: 1   MPENRQVLRNA---DSSDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTG 57

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
            CGYGSNCR++HPA+ + G  Y EELP+R GQPDC Y+LKTG CKYGSTCKYHHPKDR G
Sbjct: 58  ACGYGSNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGMCKYGSTCKYHHPKDRRG 117

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM 180
           A PVSFN LG PMRQ+EKSCPYYMRTGSCKFGVACKFHHPQ +SLG A PL G     + 
Sbjct: 118 AAPVSFNTLGFPMRQEEKSCPYYMRTGSCKFGVACKFHHPQYASLG-AYPLAGGPPTPT- 175

Query: 181 GSSVLPSSGLQYAGSLPTWS-LQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
            S+++P+SGL YAG  P WS + R  YLS   QG QSY+P  +  SQG++P   WN YMG
Sbjct: 176 -STIIPTSGLSYAGGFPAWSAVPRMSYLSG--QGLQSYVPPFLPSSQGVIPVQSWNNYMG 232

Query: 240 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 299
           N+ P  P    GSNL+Y   N G+   G Q     A +  LP RPDQP+CRY+M+TGTCK
Sbjct: 233 NMNPAMPNGFLGSNLVYDYMNLGEPLFGGQ-----AINSALPNRPDQPECRYFMSTGTCK 287

Query: 300 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 359
           YG+DCKFHHPKERI+QS    I PLGLP RPGQA+CS Y +YG+CKFGPTC+FDHP    
Sbjct: 288 YGSDCKFHHPKERISQSL---INPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTI 344

Query: 360 PINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMK 419
           P NYGL+ P +++LD+ L   + +S     ETSP   S   N +Q+SDA +         
Sbjct: 345 PQNYGLTSPAMNVLDTPLT--RGLSNVQPPETSPSKLSS-DNKLQHSDAKAA-------- 393

Query: 420 NSTTKNSDDSSKVDHPPHSVPNCSEPPHD 448
                  D S + D   +S P  +EP HD
Sbjct: 394 -----TEDSSKQDDTTSNSFPASAEPLHD 417

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501261|ref|XP_003519444.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform 1 [Glycine max] gi|356501263|ref|XP_003519445.1| PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform 2 [Glycine max]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/450 (56%), Positives = 312/450 (69%), Gaps = 37/450 (8%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA    S DNIEEAI  LKI+DN +    AQ++ YP RPGEP+CL+Y RTG
Sbjct: 1   MPENRQVLRNA---DSGDNIEEAIRHLKINDNWDRDAAAQSTQYPDRPGEPECLYYLRTG 57

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           +CGYG+NCR++HPA+ + G  Y EELP+R GQPDC Y+LKTGTCKYGSTCKYHHPKDR G
Sbjct: 58  MCGYGTNCRYHHPAHISIGTHYGEELPQRAGQPDCEYFLKTGTCKYGSTCKYHHPKDRRG 117

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSM 180
           A PVSFN LGLPMRQ+EKSCPYYMRTGSCKFGVACKFHHPQ +SLG A PL G+    + 
Sbjct: 118 AAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLG-AYPLAGSP---TP 173

Query: 181 GSSVLPSSGLQYAGSLPTWS-LQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
            S+++P+SGL YAG  P WS + R  YLS   QG QSY+P  +S SQG++P   WN YMG
Sbjct: 174 TSTIIPTSGLPYAGGFPAWSAVPRMSYLSG--QGLQSYVPPFLSSSQGVIPVQSWNNYMG 231

Query: 240 NIGPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCK 299
           N+ P  P    GSNL+Y   N G+   G Q     A +  LP RPDQP+CRY+M+TGTCK
Sbjct: 232 NMNPAMPNGFLGSNLVYDYMNLGESLFGGQ-----AINSALPNRPDQPECRYFMSTGTCK 286

Query: 300 YGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY 359
           YG+DCKFHHPKER++QS    I PLGLP RPGQA+CS Y +YG+CKFGPTC+FDHP    
Sbjct: 287 YGSDCKFHHPKERMSQSL---INPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTI 343

Query: 360 PINYGLSLPPLSILDSSLMNHQAISATHSIETSPDASSKIPNWVQNSDAVSVQHQNPDMK 419
           P NYGL+ P +++LD+ L   + +S     ETSP   S     +Q+SDA +         
Sbjct: 344 PQNYGLTSPAMNVLDTPLT--RGLSNVQPPETSPSKLSD--KKLQHSDAKAA-------- 391

Query: 420 NSTTKNSDDSSKVDHPP-HSVPNCSEPPHD 448
                 ++DSSK D    +S P  +EP H+
Sbjct: 392 ------TEDSSKQDDTTLNSFPASAEPLHN 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493165|ref|XP_003616871.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355518206|gb|AES99829.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/411 (59%), Positives = 292/411 (71%), Gaps = 19/411 (4%)

Query: 1   MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
           MP+NRQV  NA +N S DNIEEAI RLKI+  ++   V Q+ PYP RPGEPDC++Y RTG
Sbjct: 1   MPENRQVFKNAGSNPSGDNIEEAIRRLKINSTRDRDAVPQSMPYPDRPGEPDCVYYLRTG 60

Query: 61  LCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG 120
           +CGYGSNCR+NHPA  +   QY EELPER GQPDC Y+LKTGTCKYGSTCKYHHPKDR G
Sbjct: 61  MCGYGSNCRYNHPANISPVTQYGEELPERVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRG 120

Query: 121 AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP-QPSSLGTALPLTGNASLGS 179
           A PV FN LGLPMRQ+EKSCPYYMRTGSCKFGVACKFHHP Q +S G A P+       S
Sbjct: 121 AAPVVFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQAASFGGAYPVA-----AS 175

Query: 180 MGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMG 239
             S+ + SSG  YAG  P WS+ R  YLS   Q  QSY+P  +  SQGI+PA  W+ YMG
Sbjct: 176 PPSTTVTSSGFPYAGGFPAWSMPRMSYLSG--QAIQSYVPPFLPSSQGIMPALSWSNYMG 233

Query: 240 NIGPLSPTSIAGSNLIYSSRN-QGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTC 298
           +I P  PT   GSNL+Y   N  G+  +G Q     A + +LP+RP+QPDC+Y+M+TGTC
Sbjct: 234 SINPAMPTGFIGSNLVYDYMNPAGETLSGGQ-----AMNSSLPDRPEQPDCKYFMSTGTC 288

Query: 299 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 358
           KYG+DCKFHHPKERIAQ+ +  I PLGLP RPG AICS Y +YG+CKFGPTC+FDHP   
Sbjct: 289 KYGSDCKFHHPKERIAQTLS--INPLGLPMRPGNAICSYYRIYGVCKFGPTCKFDHPVVA 346

Query: 359 YPINYGLSLPPLSILDSSLM-NHQAISATHSIETSPDASSKIPNWVQNSDA 408
              NYGL  P LS+ D+SL+ N + +S     ETSP   S   + +Q SD 
Sbjct: 347 ISQNYGLPSPTLSVFDASLLTNPRRLSTVQPAETSPSKQST--DKLQQSDT 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488091|ref|XP_003633700.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 3-like [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/293 (64%), Positives = 235/293 (80%), Gaps = 2/293 (0%)

Query: 88  ERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTG 147
           +R GQPDCGYYLKT TCKYGS CKYHH +DR  AGPVS NI+GL MRQ+EK C YYMRTG
Sbjct: 26  KRIGQPDCGYYLKTRTCKYGSICKYHHSRDRLDAGPVSLNIVGLSMRQEEKPCSYYMRTG 85

Query: 148 SCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYL 207
            CKFGVACKFHH QP+S+GT LP+TG+ + GS G S+ PSSGL Y G +P W L RAPY+
Sbjct: 86  LCKFGVACKFHHLQPASIGTVLPVTGSVAFGSTGISITPSSGLSYVGGIPAWLLPRAPYM 145

Query: 208 SS-RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNLIYSSRNQGDLGA 266
              R+QG Q+YMP+++SPSQGI+PA GWNTYMGN+ P+S TSI GSNL+Y+++N  +  +
Sbjct: 146 PGPRMQGPQTYMPIVLSPSQGIIPAQGWNTYMGNMSPISSTSILGSNLVYNTKNPSESSS 205

Query: 267 GAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGL 326
             Q+H+LS S  +LPER DQP+C Y+M+TG+CKY +DCK+HHPKERIA  A + +GPL L
Sbjct: 206 NGQVHLLSLSIPHLPERRDQPECXYFMSTGSCKYDSDCKYHHPKERIAXLATNTLGPLDL 265

Query: 327 PSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY-PINYGLSLPPLSILDSSLM 378
           PSRPGQA+C +Y++YG+ ++GPTC+FDHP  GY   NY LSLPPLSIL+ SL+
Sbjct: 266 PSRPGQAVCFHYNLYGLYRYGPTCKFDHPLTGYSSYNYCLSLPPLSILEPSLL 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
TAIR|locus:2182988	465	AT5G18550 [Arabidopsis thalian	0.778	0.754	0.401	5.1e-74
TAIR|locus:2043368	468	AT2G47850 [Arabidopsis thalian	0.709	0.683	0.436	8.4e-74
TAIR|locus:2075477	397	ZFN1 "zinc finger protein 1" [	0.716	0.813	0.425	1.6e-70
TAIR|locus:2010562	404	AT1G04990 [Arabidopsis thalian	0.490	0.547	0.548	2.7e-68
TAIR|locus:2101170	448	AT3G48440 [Arabidopsis thalian	0.742	0.747	0.397	1.2e-65
TAIR|locus:2081066	462	AT3G06410 [Arabidopsis thalian	0.733	0.716	0.364	9.9e-55
TAIR|locus:2087775	524	HUA1 "ENHANCER OF AG-4 1" [Ara	0.665	0.572	0.357	6.7e-49
TAIR|locus:2171407	375	ZFN3 "zinc finger nuclease 3"	0.598	0.72	0.379	4.2e-47
TAIR|locus:1006230718	82	AT1G48195 [Arabidopsis thalian	0.175	0.963	0.506	5.4e-21
TAIR|locus:2013763	321	AT1G29570 [Arabidopsis thalian	0.113	0.158	0.509	1.3e-07

TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 152/379 (40%), Positives = 213/379 (56%)

Query:     3 DNRQVKSNAVANQSADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGL 61
             ++R   S+  + Q  +  IE ++WRL +     GGG      +P RP EPDC++Y RTG+
Sbjct:    11 ESRSDPSHEWSAQGTETGIEASMWRLGLRGG--GGG---GETFPERPDEPDCIYYLRTGV 65

Query:    62 CGYGSNCRFNHPAYAAQ--GAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD 117
             CGYGS CRFNHP   A   G    E  E PER GQP C ++++TGTCK+G++CKYHHP+ 
Sbjct:    66 CGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQ 125

Query:   118 RNGAG---PVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGN 174
               G     PVS N +G P+R  EK C Y+MRTG CKFG  C++HHP P   G   P    
Sbjct:   126 GGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPP--GVQAPSQQQ 183

Query:   175 ASLGSMGSSVLPSSGLQYAGSLPTWSLQRA-PYL--SSRLQGTQSYMPLIVSPSQGIVPA 231
                 S G ++ PS   Q   S   + +  A P L   S +Q    Y  +++ P  G+VP 
Sbjct:   184 QQQLSAGPTMYPSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVLPP--GMVPY 241

Query:   232 PGWNTYMGNIGPL-SPTS--IAGSNLIYS----SRNQGDLGAGAQMHILSASSQNLPERP 284
              GWN Y  ++  + SP +    G++ +Y     S +     +G     +S   Q  P+RP
Sbjct:   242 SGWNPYQASVSAMPSPGTQPSMGTSSVYGITPLSPSAPAYQSGPSSTGVSNKEQTFPQRP 301

Query:   285 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGIC 344
             +QP+C+Y+M TG CK+G  C+FHHP E  A   AS +  +GLP RPG   C++++ +GIC
Sbjct:   302 EQPECQYFMRTGDCKFGTSCRFHHPMEA-ASPEASTLSHIGLPLRPGAVPCTHFAQHGIC 360

Query:   345 KFGPTCRFDHPYAGYPINY 363
             KFGP C+FDH      ++Y
Sbjct:   361 KFGPACKFDHSLGSSSLSY 379

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 156/357 (43%), Positives = 212/357 (59%)

Query:    17 ADN-IEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA- 74
             AD  ++E++WRL         G+   S YP RPG PDC +Y RTG+CGYG+ CR+NHP  
Sbjct:    24 ADTGLQESMWRL---------GLGSDS-YPERPGAPDCAYYMRTGVCGYGNRCRYNHPRD 73

Query:    75 YAAQGAQYRE--ELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGL 131
              A+  A  R   + PER G+P C +YLKTGTCK+G++CK+HHPK+  G+   V  NI G 
Sbjct:    74 RASVEATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGY 133

Query:   132 PMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQ 191
             P+R+ +  C YY++TG CKFG+ CKFHHPQP+  GT +P    AS      SV      Q
Sbjct:   134 PVREGDNECSYYLKTGQCKFGITCKFHHPQPA--GTTVP-PPPASAPQFYPSVQSLMPDQ 190

Query:   192 YAGSLPTWSLQRAPYL--SSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGP-LSP-- 246
             Y G  P+ SL+ A  L   S +QG  +Y P++++P  G+VP PGW+ Y   + P LSP  
Sbjct:   191 YGG--PSSSLRVARTLLPGSYMQG--AYGPMLLTP--GVVPIPGWSPYSAPVSPALSPGA 244

Query:   247 ------TSIAGSNLIYSSRNQ--GDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTC 298
                   TS+ G   + S+     G   + +    +    Q  PERP +P+C+YY+ TG C
Sbjct:   245 QHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDC 304

Query:   299 KYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
             K+G  CKFHHP++R+   A   + P+GLP RPG   C+ Y   G CKFG TC+FDHP
Sbjct:   305 KFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGSTCKFDHP 361

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 145/341 (42%), Positives = 195/341 (57%)

Query:    21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA---YAA 77
             ++A+W++ +  ++      +   YP RPGEPDC +Y RTGLC +GS CRFNHP       
Sbjct:    18 QDAMWQMNLSSDE----TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVI 73

Query:    78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNG-AGPVSFNILGLPMRQD 136
               A+ R E PER GQP+C YYLKTGTCK+G TCK+HHP+++ G AG VS N+LG P+R +
Sbjct:    74 ATARMRGEYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN 133

Query:   137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
             E  C Y++RTG CKFG  CKF+HPQP      +P +G  S     +S + S   Q   S 
Sbjct:   134 EVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRASFIASPRWQDPSSY 193

Query:   197 PTWSLQRAPYLSSRLQGTQSYMPLI--VSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL 254
              +  +   P     +QG   Y   +  VSPS G      +     N    S +   GS  
Sbjct:   194 ASLIM---PQGVVPVQGWNPYSGQLGSVSPS-GTGNDQNYRNLQQNETIESGSQSQGS-- 247

Query:   255 IYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIA 314
              +S  N G        + L   +   PERP QP+C++YM TG CK+G  CKFHHP++R A
Sbjct:   248 -FSGYNPGSSVPLGGYYALPRENV-FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQA 305

Query:   315 QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP 355
                   +  +GLP RPG+ +C  Y+ YGICKFGP+C+FDHP
Sbjct:   306 PPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHP 346

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010313 "phytochrome binding" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0048027 "mRNA 5'-UTR binding" evidence=IPI

TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 131/239 (54%), Positives = 167/239 (69%)

Query:     1 MPDNRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTG 60
             M D + V+S+ V+ +S+D IE+A  ++K+++     GV + +PYP RPGE DC FY RTG
Sbjct:     5 MSDTQHVQSSLVSIRSSDKIEDAFRKMKVNET----GVEELNPYPDRPGERDCQFYLRTG 60

Query:    61 LCGYGSNCRFNHPAYAAQG-AQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRN 119
             LCGYGS+CR+NHP +  Q  A Y+EELPER GQPDC Y+LKTG CKYG TCKYHHPKDRN
Sbjct:    61 LCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN 120

Query:   120 GAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGS 179
             GA PV FN++GLPMR  EK CPYY+RTG+C+FGVACKFHHPQP +        G+++  +
Sbjct:   121 GAQPVMFNVIGLPMRLGEKPCPYYLRTGTCRFGVACKFHHPQPDN--------GHST--A 170

Query:   180 MGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYM 238
              G S  P++ L+YA  L   S         R Q  QSY+P++VSPSQG +P  GW  YM
Sbjct:   171 YGMSSFPAADLRYASGLTMMSTYGT---LPRPQVPQSYVPILVSPSQGFLPPQGWAPYM 226

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 146/367 (39%), Positives = 206/367 (56%)

Query:     4 NRQVKSNAVANQSADNIEEAIWRLKIHDNQEGGGVAQA-SPYPARPGEPDCLFYRRTGLC 62
             N  + SNAV   + +  EE   R   +   +G    ++ + YP RPG  DC FY RTG C
Sbjct:    67 NGGLDSNAVVTINQEEEEEEEDR-DGYGYGDGWSENESENVYPVRPGAEDCSFYMRTGSC 125

Query:    63 GYGSNCRFNHPA----YAAQGAQYREELPE--RNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
              +GS+C+FNHP       A+  + RE+  +  + G  DC YY +TG CKYG TC+++H  
Sbjct:   126 KFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGCKYGETCRFNHTI 185

Query:   117 DRNG-AGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLG-TALP-LTG 173
              ++G A     N LGLP+R  E  CPYYMR GSCK+G  CKF+HP P+++G T  P   G
Sbjct:   186 PKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECKFNHPDPTTIGGTDSPSFRG 245

Query:   174 NASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPA-P 232
             N  + S+G+   P +  Q   S  +WS  R       + GT  ++P+++S + G+    P
Sbjct:   246 NNGV-SIGT-FSPKATFQ--ASSTSWSSPR------HVNGTSPFIPVMLSQTHGVTSQNP 295

Query:   233 GWNTYMGNI-----GPLSPTSIAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQP 287
              WN Y  ++     G  SP++   + L+ +S  +  +      H + A  +  PERPDQP
Sbjct:   296 EWNGYQASVYSSERGVFSPST---TYLMNNSSAETSMLLSQYRHQMPA--EEFPERPDQP 350

Query:   288 DCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFG 347
             +C YYM TG CK+  +CK+HHPK R+ +     +   GLP RP Q IC+ YS YGICKFG
Sbjct:   351 ECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNICTYYSRYGICKFG 410

Query:   348 PTCRFDH 354
             P CRFDH
Sbjct:   411 PACRFDH 417

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 129/354 (36%), Positives = 186/354 (52%)

Query:    20 IEEAIWRLKIHDNQEGGGVAQASPY-PARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQ 78
             +E  +WRL +     GGG  ++ P  P  P     L     G  G            A  
Sbjct:    29 VEAPMWRLGLSGGGGGGGGGESYPERPDEPDCIYYLRTGVCGY-GSRCRFNHPRDRGAVI 87

Query:    79 GAQYREE--LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG---PVSFNILGLPM 133
             G    E   LPER G P C ++++TGTCK+G++CKYHHP+   G G   PVS + LG P+
Sbjct:    88 GGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPL 147

Query:   134 RQDEKSCPYYMRTGSCKFGVACKFHHPQPSSL-GTAL-PLTGNASLGSMGSSVLPSSGLQ 191
             R  EK C YY+RTG CKFG+ C+F+HP P ++ G    P            ++ P+   Q
Sbjct:   148 RPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQPQLQTIYPTLQSQ 207

Query:   192 YAGSLPTWSL--QRAPYLS-SRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPL-SPT 247
                S   + L   R  +L+ S LQ    Y P +V P  G+VP  GWN Y  ++  + SP 
Sbjct:   208 SIPSSQQYGLVLTRPSFLTGSYLQSP--YGPPMVLPP-GMVPYSGWNPYQASLSAMPSPG 264

Query:   248 S--IAGSNLIY-----SSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKY 300
             +    GS+ IY     S       G    +   +++S+  P+RPDQP+C+Y+M TG CK+
Sbjct:   265 TQPSIGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKF 324

Query:   301 GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDH 354
             G+ C++HHP + +       +  +GLP RPG A C++++ +GICKFGP C+FDH
Sbjct:   325 GSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACKFDH 378

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 124/347 (35%), Positives = 173/347 (49%)

Query:    44 YPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGA--QYRE-------ELPERNGQPD 94
             YP R GE DC  Y +T  C +G +CRF+HP +  +G    ++E       E PER G+PD
Sbjct:   171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230

Query:    95 CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
             C YY+KT  CKYGS CK++HP++       + +   LP R  E  C +YM+TG CKFG++
Sbjct:   231 CPYYIKTQRCKYGSKCKFNHPREEAAVSVETQD--SLPERPSEPMCTFYMKTGKCKFGLS 288

Query:   155 CKFHHPQ----PSS---LGTALPLTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQ-RAP- 205
             CKFHHP+    PSS   +G+++ LT      +        +    +  LP  S +   P 
Sbjct:   289 CKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGLPVRSGEVDCPF 348

Query:   206 YL---SSRLQGTQSYMPLIVSPSQ-GIVP-APGWNTYM--GNIGPLSPTSIAGSNLIYSS 258
             YL   S +   T  Y      P +   +P A G N  +   N   L+   +  +   Y +
Sbjct:   349 YLKTGSCKYGATCRYN----HPERTAFIPQAAGVNYSLVSSNTANLNLGLVTPATSFYQT 404

Query:   259 RNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIA---- 314
               Q  LG      ++SA+    P+RP Q +C YYM TG CK+G  CKFHHP +R++    
Sbjct:   405 LTQPTLG------VISAT---YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTK 455

Query:   315 ---QSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG 358
                Q     +   G P R G   C  Y   G CK+G TC+FDHP  G
Sbjct:   456 QAPQQPNVKLSLAGYPRREGALNCPYYMKTGTCKYGATCKFDHPPPG 502

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 120/316 (37%), Positives = 163/316 (51%)

Query:    21 EEAIWRLKIHDNQEGGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP---AYAA 77
             + A+W++ +  +   G     S YP R GEPDC +Y RTGLC +GS CRFNHP       
Sbjct:    19 QNAMWQMNLGSDDTMG--VDGS-YPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVI 75

Query:    78 QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGA-GPVSFNILGLPMRQD 136
               A+ + E PER GQP+C +YLKTGTCK+G TCK+HHP+++ G  G VS N+L  P+R +
Sbjct:    76 ATARIKGEYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPN 135

Query:   137 EKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPLTGNASLGSMGSSVLPSSGLQYAGSL 196
             E  C Y++R G CKFG  CKF+HPQ  S         N  +   GS V   S LQ     
Sbjct:   136 EDDCSYFLRIGQCKFGGTCKFNHPQTQST--------NLMVSVRGSPVY--SALQSLTGQ 185

Query:   197 PTWSLQRAPYLSS--RLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIAGSNL 254
             P++S  R  ++++  RLQ    +     S SQG + + G+++  GN  PL   ++   N+
Sbjct:   186 PSYSWSRTSFVANPPRLQDPSGF----ASGSQGGLFSSGFHS--GNSVPLGFYALPRENV 239

Query:   255 IYSSRNQ---------GD--LGAGAQMHI----------LSASSQNLPERPDQPDCRYYM 293
                   Q         GD   G   + H              SS  LP RP +P C +Y 
Sbjct:   240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299

Query:   294 NTGTCKYGADCKFHHP 309
               G CK+G  CKF HP
Sbjct:   300 RYGICKFGPSCKFDHP 315

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 5.4e-21, P = 5.4e-21
 Identities = 40/79 (50%), Positives = 51/79 (64%)

Query:   276 SSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAIC 335
             S +  PERP +P+C YY+ TG C    +CK+HHPK          +   GLP RPGQAIC
Sbjct:     2 SEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAIC 61

Query:   336 SNYSMYGICKFGPTCRFDH 354
              +YS +GIC+ GPTC+FDH
Sbjct:    62 PHYSRFGICRSGPTCKFDH 80

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2013763 AT1G29570 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 27/53 (50%), Positives = 34/53 (64%)

Query:    40 QASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYR--EELPERN 90
             Q+SPYP RPG+ DC FY + GLC Y S+CRFNHP    Q    R  + + +RN
Sbjct:    48 QSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRN 100

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AD9	C3H3_ARATH	3, ., 1, ., -, ., -	0.4828	0.8514	0.9504	yes	no
Q2R4J4	C3H63_ORYSJ	No assigned EC number	0.4516	0.8292	0.8423	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIV3517 hypothetical protein (446 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	451
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-08
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	4e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	4e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	6e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	1e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	3e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.002
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.003
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.004

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 284 PDQPDCRYYMNTGTCKYGADCKFHHPK 310
                CR++  TGTCKYG  CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 140 CPYYMRTGSCKFGVACKFHHPQ 161
           C ++ RTG+CK+G  CKF H Q
Sbjct: 6   CRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 91  GQPDCGYYLKTGTCKYGSTCKYHHPK 116
               C ++ +TGTCKYG  CK+ H +
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 330 PGQAICSNYSMYGICKFGPTCRFDHP 355
               +C  +S  G CK+G  C+F H 
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73
               C F+ RTG C YG  C+F H 
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 286 QPDCRYYMNTGTCKYGADCKFHHPK 310
              C+++   G C  G  CKF HP 
Sbjct: 4   TELCKFFK-RGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 89  RNGQPDCGYYLKTGTCKYGSTCKYHHPK 116
           +     C ++ K G C  G  CK+ HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 1/28 (3%)

Query: 329 RPGQAICSNYSMYGICKFGPTCRFDHPY 356
           +    +C  +   G C  G  C+F HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 47 RPGEPDCLFYRRTGLCGYGSNCRFNHP 73
          +     C F++R G C  G  C+F HP
Sbjct: 1  KYKTELCKFFKR-GYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 140 CPYYMRTGSCKFGVACKFHHP 160
           C ++ + G C  G  CKF HP
Sbjct: 7   CKFF-KRGYCPRGDRCKFAHP 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	451
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.9
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.67
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.39
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.33
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	99.27
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.15
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.14
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	99.11
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.6
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.59
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.52
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.51
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	98.47
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.38
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.15
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.13
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.1
smart00356	27	ZnF_C3H1 zinc finger.	97.79
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.75
smart00356	27	ZnF_C3H1 zinc finger.	97.74
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.66
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.59
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.42
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.14
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.72
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.35
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	96.15
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.12
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.01
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.86
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.64
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	94.64
COG5152	259	Uncharacterized conserved protein, contains RING a	94.46
COG5152	259	Uncharacterized conserved protein, contains RING a	94.42
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	90.61
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	89.32
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	88.72
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	88.72
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	88.56
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	87.62
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	85.66
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	80.5

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.90  E-value=4.1e-23  Score=209.24  Aligned_cols=122  Identities=44%  Similarity=0.906  Sum_probs=104.1

Q ss_pred             CCCCCCCCCCcCCccccccCCCCCCCCCCCCCch-hhhc-cc--cccccCCCCccccccccccccccCCC-CCCCCCCCC
Q 013033           41 ASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPA-YAAQ-GA--QYREELPERNGQPDCGYYLKTGTCKY-GSTCKYHHP  115 (451)
Q Consensus        41 ~~~~p~rpg~~~C~~f~rtG~C~~G~~C~F~H~~-~~~~-~~--~~~~~~Per~~~p~C~~FlktG~Ck~-G~~CrF~H~  115 (451)
                      ...|+++..+.+|.+|.+++.|.++..|+|+|+. .... ..  ......+++.++++|++|.++|.|+| |++|+|+|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~  156 (332)
T KOG1677|consen   77 SSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHG  156 (332)
T ss_pred             cCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCC
Confidence            4569999998999999999999999999999996 3222 21  35577899999999999999999999 999999999


Q ss_pred             CCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033          116 KDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus       116 ~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                      ........ .++..+.+.+.++++|.+|.++|.|+||.+|+|.|+...
T Consensus       157 ~~e~r~~~-~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~  203 (332)
T KOG1677|consen  157 LEELRLPS-SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPE  203 (332)
T ss_pred             cccccccc-cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcc
Confidence            88654221 345677888999999999999999999999999999875

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.67  E-value=7.1e-17  Score=163.77  Aligned_cols=79  Identities=34%  Similarity=0.777  Sum_probs=69.6

Q ss_pred             CCCCCCCCccccchhccccccC-CCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCC
Q 013033          279 NLPERPDQPDCRYYMNTGTCKY-GADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  357 (451)
Q Consensus       279 ~~p~r~~~~lC~~f~~tG~C~~-G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~  357 (451)
                      ..++++++++|++|+++|.|+| |++|||+|+.++++...  .+...+++.++||++|.+|.++|.|+||.+|+|+|+..
T Consensus       125 ~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~  202 (332)
T KOG1677|consen  125 RKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEP  202 (332)
T ss_pred             cCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCc
Confidence            4567789999999999999999 99999999999998532  23456688999999999999999999999999999987


Q ss_pred             CC
Q 013033          358 GY  359 (451)
Q Consensus       358 ~~  359 (451)
                      ..
T Consensus       203 ~~  204 (332)
T KOG1677|consen  203 ED  204 (332)
T ss_pred             cc
Confidence            44

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.39  E-value=4.7e-13  Score=135.54  Aligned_cols=85  Identities=31%  Similarity=0.706  Sum_probs=69.3

Q ss_pred             CCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCcee
Q 013033           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF  126 (451)
Q Consensus        47 rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~  126 (451)
                      -.++++|+||++ |.|+.||.|.|+|..+..             +.+.|.||..+|.|..+++|.|.|.....       
T Consensus        74 ~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~-------------k~rec~ff~~~g~c~~~~~c~y~h~dpqt-------  132 (325)
T KOG1040|consen   74 SRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT-------------KMRECKFFSLFGECTNGKDCPYLHGDPQT-------  132 (325)
T ss_pred             cCCceeehhhhh-hhhhccCcCcchhhhhhc-------------ccccccccccccccccccCCcccCCChhh-------
Confidence            567889999997 999999999999987543             44679999889999988999999987421       


Q ss_pred             cccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 013033          127 NILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (451)
Q Consensus       127 ~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~  162 (451)
                               ..++|..|.. |+|+.|..|++.|...
T Consensus       133 ---------~~k~c~~~~~-g~c~~g~~c~~~h~~~  158 (325)
T KOG1040|consen  133 ---------AIKKCKWYKE-GFCRGGPSCKKRHERK  158 (325)
T ss_pred             ---------hhhccchhhh-ccCCCcchhhhhhhcc
Confidence                     2366998886 9999999999998853

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.33  E-value=6.3e-13  Score=126.79  Aligned_cols=82  Identities=29%  Similarity=0.786  Sum_probs=69.4

Q ss_pred             CCCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCce
Q 013033           46 ARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVS  125 (451)
Q Consensus        46 ~rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~  125 (451)
                      ..|..+.|+||..+|.|.+|..|+|.|...+.               .+|..|+ +|.|...+.|..+|..+..      
T Consensus       202 nspsavycryynangicgkgaacrfvheptrk---------------ticpkfl-ngrcnkaedcnlsheldpr------  259 (377)
T KOG1492|consen  202 NSPSAVYCRYYNANGICGKGAACRFVHEPTRK---------------TICPKFL-NGRCNKAEDCNLSHELDPR------  259 (377)
T ss_pred             CCCceeEEEEecCCCcccCCceeeeecccccc---------------ccChHHh-cCccCchhcCCcccccCcc------
Confidence            34567889999999999999999999987643               4699999 5999999999999988742      


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q 013033          126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQ  161 (451)
Q Consensus       126 ~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~  161 (451)
                                ..+.|+||+- |.|. ..+|||.|..
T Consensus       260 ----------ripacryfll-gkcn-npncryvhih  283 (377)
T KOG1492|consen  260 ----------RIPACRYFLL-GKCN-NPNCRYVHIH  283 (377)
T ss_pred             ----------ccchhhhhhh-ccCC-CCCceEEEEe
Confidence                      2356999995 9997 7999999984

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=99.27  E-value=5.4e-12  Score=126.05  Aligned_cols=214  Identities=23%  Similarity=0.462  Sum_probs=131.1

Q ss_pred             cccccccccccCCCCCC-CCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCC
Q 013033           93 PDCGYYLKTGTCKYGST-CKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALPL  171 (451)
Q Consensus        93 p~C~~FlktG~Ck~G~~-CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~~~g~~~p~  171 (451)
                      .+||.|+| |.|++|++ |||.|+.......           ..+...|.+|++ |.|. .++|||.|+..... .++.+
T Consensus        38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V~-----------~g~v~aC~Ds~k-grCs-R~nCkylHpp~hlk-dql~i  102 (331)
T KOG2494|consen   38 EVCREFLR-NTCSRGDRECKFAHPPKNCQVS-----------NGRVIACFDSQK-GRCS-RENCKYLHPPQHLK-DQLKI  102 (331)
T ss_pred             HHHHHHHh-ccccCCCccccccCCCCCCCcc-----------CCeEEEEecccc-CccC-cccceecCCChhhh-hhhhh
Confidence            57999998 99999998 9999998753322           123357999997 9998 58899999988743 36666


Q ss_pred             CCCCCCCCCCC-CcCCCCCCCCCCCCCcccccCCCCcCcCcCCCccccccc-cCCCCCccCCCCCCCCCCCCC-CCCCCC
Q 013033          172 TGNASLGSMGS-SVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLI-VSPSQGIVPAPGWNTYMGNIG-PLSPTS  248 (451)
Q Consensus       172 ~~~~~~~~~~~-~~~p~s~~~~~~~~~~~~~~r~~~i~~~~q~p~~y~p~~-~~p~~g~vp~~~w~~y~~~~~-p~~~~~  248 (451)
                      ++......... ..+....++. .+.+.-.                 +|++ +.|..+-++...+++|+..+. +..++.
T Consensus       103 ngrn~l~lq~~~aA~~~q~~~~-~g~Pi~~-----------------v~~f~~~~~~~g~~~~s~~~y~~~~Pg~~vp~~  164 (331)
T KOG2494|consen  103 NGRNNLILQKTAAAMLAQQMQG-PGTPICS-----------------VPMFATGPCLGGNTACSYWPYLPPVPGGLVPAD  164 (331)
T ss_pred             cccccHHHHHHHHhhhcccccC-CCccccc-----------------cccccccccccCCCccccccccCCCCCCCCCCc
Confidence            66533110000 0011111110 0111111                 1111 234456666666777777542 344555


Q ss_pred             CCCCCcccccCCCCCCccccchhhhccccCCCCCCCCCccccchhccccccCCCC-CccCCcchhhhccccccCCCCCCC
Q 013033          249 IAGSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGAD-CKFHHPKERIAQSAASNIGPLGLP  327 (451)
Q Consensus       249 ~~~~~~~y~~~~~~~~~~~~~~~~~s~~~~~~p~r~~~~lC~~f~~tG~C~~G~~-Ckf~H~~~~l~~~~~~~l~p~~~p  327 (451)
                      ++...++|..........+      ....+......+.++|+.  ..|.|..++. |+|.|+.+.+......        
T Consensus       165 ~~p~~~~~~~g~p~v~~~~------~~~~~k~~r~~~~e~~~~--~~gn~~r~e~d~~f~~~~k~~~~~s~~--------  228 (331)
T KOG2494|consen  165 GLPTTPVFVPGGPGVPGPG------LVGGQKLLRSDRLEVCRE--QRGNCRRGEQDAQFAHPAKSIMIDSND--------  228 (331)
T ss_pred             CCCCCccccCCCCcccccc------cccccccccCCCCCCCcc--cccccccchhHHHHhhhhhhhhcccCC--------
Confidence            5666666654433111111      012345556677889998  4688999884 9999998887665431        


Q ss_pred             CCCCCcCCccccccccCCCCCCCccCCCCCCC
Q 013033          328 SRPGQAICSNYSMYGICKFGPTCRFDHPYAGY  359 (451)
Q Consensus       328 ~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~~  359 (451)
                        .-..+|.-|.+ |.|- -++|++.|+....
T Consensus       229 --~t~~~~~~~t~-~~~~-~en~~~~~~~~h~  256 (331)
T KOG2494|consen  229 --NTVEVCLRYTK-GRCE-TENCKYFHAPAHD  256 (331)
T ss_pred             --Ccchhcccccc-ceec-hhcccccCchHHH
Confidence              12458888887 9997 7789999997643

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.15  E-value=4.8e-11  Score=121.07  Aligned_cols=88  Identities=27%  Similarity=0.687  Sum_probs=69.3

Q ss_pred             CCCCcCCcccccc-CCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCce
Q 013033           47 RPGEPDCLFYRRT-GLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVS  125 (451)
Q Consensus        47 rpg~~~C~~f~rt-G~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~  125 (451)
                      |-+...|.++.+. -.|.+|..|.+.|....           +..+..+|+||++ |.|+.|+.|-|+|..+..      
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~vcK~~l~-glC~kgD~C~Flhe~~~~------  103 (325)
T KOG1040|consen   42 ESGRATCEFNESREKPCERGPICPKSHNDVS-----------DSRGKVVCKHWLR-GLCKKGDQCEFLHEYDLT------  103 (325)
T ss_pred             ccccchhcccccCCCCccCCCCCccccCCcc-----------ccCCceeehhhhh-hhhhccCcCcchhhhhhc------
Confidence            3345678887732 35889999999998742           1125678999997 999999999999987432      


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 013033          126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (451)
Q Consensus       126 ~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~  162 (451)
                                +.++|.||..+|.|..|..|.|.|.++
T Consensus       104 ----------k~rec~ff~~~g~c~~~~~c~y~h~dp  130 (325)
T KOG1040|consen  104 ----------KMRECKFFSLFGECTNGKDCPYLHGDP  130 (325)
T ss_pred             ----------ccccccccccccccccccCCcccCCCh
Confidence                      235699999999999999999999965

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.14  E-value=1.7e-10  Score=114.08  Aligned_cols=194  Identities=15%  Similarity=0.255  Sum_probs=132.2

Q ss_pred             CCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCC------
Q 013033           49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG------  122 (451)
Q Consensus        49 g~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~------  122 (451)
                      +++.|+.-...+.|++++.|.|+|...+..-    ...+.+.++.-|..|+.-|.|.++.+|-|.|-.-.....      
T Consensus       114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl----~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~l~~r  189 (351)
T COG5063         114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSL----AQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQPLSQR  189 (351)
T ss_pred             cchhhhccccccccccCCCCcCCCccccccc----cccCccccccceeEEecCCccccccccccccccccccCcchhhcc
Confidence            3456665433489999999999999764321    223445566779999988999999999998854322110      


Q ss_pred             -C-ce---------ecccCCC--------------CCC-CCCCCCCCCCCCcCCC---CCCCCCC---CCCCCCCCCCcC
Q 013033          123 -P-VS---------FNILGLP--------------MRQ-DEKSCPYYMRTGSCKF---GVACKFH---HPQPSSLGTALP  170 (451)
Q Consensus       123 -~-~~---------~~~~g~P--------------~r~-~~~~C~~y~k~G~C~~---G~~CrF~---H~~~~~~g~~~p  170 (451)
                       + ..         .+....|              ++. ...+|.-|-..|.|++   |+.|.|+   |......     
T Consensus       190 kpks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~-----  264 (351)
T COG5063         190 KPKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELK-----  264 (351)
T ss_pred             CcccCcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccc-----
Confidence             0 00         1111111              110 1256888888899999   8889888   6621100     


Q ss_pred             CCCCCCCCCCCCCcCCCCCCCCCCCCCcccccCCCCcCcCcCCCccccccccCCCCCccCCCCCCCCCCCCCCCCCCCCC
Q 013033          171 LTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA  250 (451)
Q Consensus       171 ~~~~~~~~~~~~~~~p~s~~~~~~~~~~~~~~r~~~i~~~~q~p~~y~p~~~~p~~g~vp~~~w~~y~~~~~p~~~~~~~  250 (451)
                                                                                                      
T Consensus       265 --------------------------------------------------------------------------------  264 (351)
T COG5063         265 --------------------------------------------------------------------------------  264 (351)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccCCCCCCccccchhhhccccCCCCCCCCCccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCCCC
Q 013033          251 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRP  330 (451)
Q Consensus       251 ~~~~~y~~~~~~~~~~~~~~~~~s~~~~~~p~r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~  330 (451)
                                                ...-..-++|+.|..|.+.|+|+||.+|.|.||.+++......      --+.|
T Consensus       265 --------------------------~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~------~~~~y  312 (351)
T COG5063         265 --------------------------SKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEE------ASLGY  312 (351)
T ss_pred             --------------------------ccccccccccCCccchhhcccCccccccccccCChhhcccccc------ccccc
Confidence                                      0000111488999999999999999999999999987654321      12356


Q ss_pred             CCcCCccccccccCCCCCCCccCCCCCCCCCcc
Q 013033          331 GQAICSNYSMYGICKFGPTCRFDHPYAGYPINY  363 (451)
Q Consensus       331 ~t~~C~~y~~~G~CkfG~~C~F~H~~~~~~~~~  363 (451)
                      ...+|+.++++|.|++|-+|.|.|....+...+
T Consensus       313 ~~~~crt~~~~g~~p~g~~~c~~~dkkn~~~s~  345 (351)
T COG5063         313 LDGPCRTRAKGGAFPSGGAVCKSFDKKNLDFSV  345 (351)
T ss_pred             cccccccccccCccCCCCchhhccccchhhhhh
Confidence            677999999999999999999999988765433

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=99.11  E-value=1.4e-10  Score=114.73  Aligned_cols=179  Identities=18%  Similarity=0.337  Sum_probs=111.6

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcC
Q 013033           91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTALP  170 (451)
Q Consensus        91 ~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~~~g~~~p  170 (451)
                      +++.|+.-..-+.|++++.|.|+|......-..       .+.+.+++-|..|...|.|+++.+|-|.|....... -.+
T Consensus       114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl~~-------~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~-~q~  185 (351)
T COG5063         114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQ-------THPKYKTESLEVFINPGYVPYSKRCCFISLPLTDIN-LQP  185 (351)
T ss_pred             cchhhhccccccccccCCCCcCCCccccccccc-------cCccccccceeEEecCCccccccccccccccccccC-cch
Confidence            445666543338899999999999987543221       234566778999998999999999999988554210 111


Q ss_pred             CCCCCCCCCCCCCcCCCCCCCCCCCCCcccccCCCCcCcCcCCCccccccccCCCCCccCCCCCCCCCCCCCCCCCCCCC
Q 013033          171 LTGNASLGSMGSSVLPSSGLQYAGSLPTWSLQRAPYLSSRLQGTQSYMPLIVSPSQGIVPAPGWNTYMGNIGPLSPTSIA  250 (451)
Q Consensus       171 ~~~~~~~~~~~~~~~p~s~~~~~~~~~~~~~~r~~~i~~~~q~p~~y~p~~~~p~~g~vp~~~w~~y~~~~~p~~~~~~~  250 (451)
                      +.+.          -+    .....-.+..+.|.....|.+          ..+            |             
T Consensus       186 l~~r----------kp----ks~~~~~s~t~~kes~a~P~~----------~~~------------~-------------  216 (351)
T COG5063         186 LSQR----------KP----KSGKNCTSYTLGKESDAHPHD----------ELI------------Y-------------  216 (351)
T ss_pred             hhcc----------Cc----ccCcCccccccccccccCchh----------hhh------------h-------------
Confidence            1100          00    000000111111111111100          000            0             


Q ss_pred             CCCcccccCCCCCCccccchhhhccccCCCCCCCCC--ccccchhccccccC---CCCCccC---CcchhhhccccccCC
Q 013033          251 GSNLIYSSRNQGDLGAGAQMHILSASSQNLPERPDQ--PDCRYYMNTGTCKY---GADCKFH---HPKERIAQSAASNIG  322 (451)
Q Consensus       251 ~~~~~y~~~~~~~~~~~~~~~~~s~~~~~~p~r~~~--~lC~~f~~tG~C~~---G~~Ckf~---H~~~~l~~~~~~~l~  322 (451)
                                          +.   .++.- .-+++  .+|.-|-+.|.|+|   |++|+|+   ||..++....     
T Consensus       217 --------------------~~---~e~n~-~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~-----  267 (351)
T COG5063         217 --------------------QK---QEQNK-PLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK-----  267 (351)
T ss_pred             --------------------hh---hhccc-hhhcCCHHHhhccCcCCCCccccccccccccccccccccccccc-----
Confidence                                00   01111 11355  89999999999999   9999999   9977665432     


Q ss_pred             CCCCCCCCCCcCCccccccccCCCCCCCccCCCCCC
Q 013033          323 PLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  358 (451)
Q Consensus       323 p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~  358 (451)
                         .-..++|++|.+|..-|+|+||.||.|.|..+.
T Consensus       268 ---k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~  300 (351)
T COG5063         268 ---KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS  300 (351)
T ss_pred             ---cccccccCCccchhhcccCccccccccccCChh
Confidence               335789999999999999999999999999763

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.60  E-value=5.4e-08  Score=97.74  Aligned_cols=101  Identities=26%  Similarity=0.496  Sum_probs=69.5

Q ss_pred             cCCccccccCCCCCCCC-CCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCC-----c
Q 013033           51 PDCLFYRRTGLCGYGSN-CRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGP-----V  124 (451)
Q Consensus        51 ~~C~~f~rtG~C~~G~~-C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~-----~  124 (451)
                      ++|+.|+| |.|++|++ |||+|+......        +.-+...|..|+| |.|. .++|||+|+....+..-     .
T Consensus        38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V--------~~g~v~aC~Ds~k-grCs-R~nCkylHpp~hlkdql~ingrn  106 (331)
T KOG2494|consen   38 EVCREFLR-NTCSRGDRECKFAHPPKNCQV--------SNGRVIACFDSQK-GRCS-RENCKYLHPPQHLKDQLKINGRN  106 (331)
T ss_pred             HHHHHHHh-ccccCCCccccccCCCCCCCc--------cCCeEEEEecccc-CccC-cccceecCCChhhhhhhhhcccc
Confidence            67999999 99999999 999999763211        1113356999996 9998 58899999887543211     0


Q ss_pred             --eec------ccCCCCCCCCCCCC--CCCCCCcCCCC-CCCCCCCCCCC
Q 013033          125 --SFN------ILGLPMRQDEKSCP--YYMRTGSCKFG-VACKFHHPQPS  163 (451)
Q Consensus       125 --~~~------~~g~P~r~~~~~C~--~y~k~G~C~~G-~~CrF~H~~~~  163 (451)
                        .+.      ..+.+...+.++|.  .|. ++-|.-| ..|+|.|..+.
T Consensus       107 ~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~~  155 (331)
T KOG2494|consen  107 NLILQKTAAAMLAQQMQGPGTPICSVPMFA-TGPCLGGNTACSYWPYLPP  155 (331)
T ss_pred             cHHHHHHHHhhhcccccCCCcccccccccc-ccccccCCCccccccccCC
Confidence              000      01112224677888  666 5888877 46999999774

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.59  E-value=4e-07  Score=90.94  Aligned_cols=88  Identities=24%  Similarity=0.533  Sum_probs=68.7

Q ss_pred             CCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecc
Q 013033           49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNI  128 (451)
Q Consensus        49 g~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~  128 (451)
                      .+..|.+|+..+.+...-+|.+.|.....            ..-.+|++|++ |.|+-+..|.|+|..+....       
T Consensus        73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~~------------~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s-------  132 (285)
T COG5084          73 NTVACISRNFNSIRGSRLSTPNNHVNPVL------------SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSS-------  132 (285)
T ss_pred             cccccccccccCCccccccCCccccCccc------------cCCcccchhcc-ccCcCCCccccccCCCcccc-------
Confidence            45669999976667777789999976421            12357999996 99999999999999875331       


Q ss_pred             cCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033          129 LGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus       129 ~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                             ....|++|...|.|..|..|.+.|.++.
T Consensus       133 -------~~~~c~~Fs~~G~cs~g~~c~~~h~dp~  160 (285)
T COG5084         133 -------QGPPCRSFSLKGSCSSGPSCGYSHIDPD  160 (285)
T ss_pred             -------cCCCcccccccceeccCCCCCccccCcc
Confidence                   1345999966799999999999999753

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.52  E-value=2.7e-08  Score=65.37  Aligned_cols=27  Identities=41%  Similarity=1.038  Sum_probs=22.1

Q ss_pred             CCCccccchhccccccCCCCCccCCcc
Q 013033          284 PDQPDCRYYMNTGTCKYGADCKFHHPK  310 (451)
Q Consensus       284 ~~~~lC~~f~~tG~C~~G~~Ckf~H~~  310 (451)
                      +++++|++|+++|.|+||++|+|+|++
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            478999999999999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.51  E-value=1.2e-07  Score=94.69  Aligned_cols=88  Identities=31%  Similarity=0.680  Sum_probs=71.5

Q ss_pred             CCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceec
Q 013033           48 PGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFN  127 (451)
Q Consensus        48 pg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~  127 (451)
                      ...++|++|++ |.|+.|..|.|+|..+.+..           ..+.|++|...|.|..|..|.|.|.....        
T Consensus       102 ~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s-----------~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~--------  161 (285)
T COG5084         102 SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSS-----------QGPPCRSFSLKGSCSSGPSCGYSHIDPDS--------  161 (285)
T ss_pred             cCCcccchhcc-ccCcCCCccccccCCCcccc-----------cCCCcccccccceeccCCCCCccccCccc--------
Confidence            44689999998 99999999999999886421           24679999556999999999999987432        


Q ss_pred             ccCCCCCCCCCCCCCCCC--CCcCCCCCCCCCCCCCCC
Q 013033          128 ILGLPMRQDEKSCPYYMR--TGSCKFGVACKFHHPQPS  163 (451)
Q Consensus       128 ~~g~P~r~~~~~C~~y~k--~G~C~~G~~CrF~H~~~~  163 (451)
                              ....|.+|..  +++|+.|..|+|.|....
T Consensus       162 --------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~  191 (285)
T COG5084         162 --------FAGNCDQYSGATYGFCPLGASCKFSHTLKR  191 (285)
T ss_pred             --------ccccccccCcccccccCCCCcccccccccc
Confidence                    2345887774  699999999999999753

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=98.47  E-value=6.8e-08  Score=92.65  Aligned_cols=83  Identities=25%  Similarity=0.652  Sum_probs=69.2

Q ss_pred             CCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecc
Q 013033           49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNI  128 (451)
Q Consensus        49 g~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~  128 (451)
                      .+..|..|+ +|.|.+.+.|...|..+.+             +.+.|+||+ .|.|. ..+|||.|..-..         
T Consensus       232 rkticpkfl-ngrcnkaedcnlsheldpr-------------ripacryfl-lgkcn-npncryvhihyse---------  286 (377)
T KOG1492|consen  232 RKTICPKFL-NGRCNKAEDCNLSHELDPR-------------RIPACRYFL-LGKCN-NPNCRYVHIHYSE---------  286 (377)
T ss_pred             ccccChHHh-cCccCchhcCCcccccCcc-------------ccchhhhhh-hccCC-CCCceEEEEeecC---------
Confidence            367899999 5999999999999998753             347899999 59997 7999999975421         


Q ss_pred             cCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033          129 LGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus       129 ~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                             ..++|.-|.+.|+|..|..|+-.|...-
T Consensus       287 -------napicfefakygfcelgtscknqhilqc  314 (377)
T KOG1492|consen  287 -------NAPICFEFAKYGFCELGTSCKNQHILQC  314 (377)
T ss_pred             -------CCceeeeehhcceeccccccccceeeee
Confidence                   2357999999999999999999998653

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.38  E-value=5.3e-08  Score=63.99  Aligned_cols=27  Identities=33%  Similarity=0.753  Sum_probs=22.0

Q ss_pred             CCCcCCccccccccCCCCCCCccCCCC
Q 013033          330 PGQAICSNYSMYGICKFGPTCRFDHPY  356 (451)
Q Consensus       330 ~~t~~C~~y~~~G~CkfG~~C~F~H~~  356 (451)
                      ||+.+|++|+++|.|+||++|+|.|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            578899999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.15  E-value=2.4e-05  Score=83.32  Aligned_cols=58  Identities=24%  Similarity=0.556  Sum_probs=47.8

Q ss_pred             ccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCCCC
Q 013033          287 PDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY  359 (451)
Q Consensus       287 ~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~~  359 (451)
                      ..|-.|.+ |.|+.||.|.|+|+.-|--      |+    |.+|||..|+.-   |+|+- .-|.|.|-...+
T Consensus       237 tpCPefrk-G~C~rGD~CEyaHgvfEcw------LH----Pa~YRT~~CkDg---~~C~R-rvCfFAH~~eqL  294 (528)
T KOG1595|consen  237 TPCPEFRK-GSCERGDSCEYAHGVFECW------LH----PARYRTRKCKDG---GYCPR-RVCFFAHSPEQL  294 (528)
T ss_pred             ccCccccc-CCCCCCCccccccceehhh------cC----HHHhccccccCC---CCCcc-ceEeeecChHHh
Confidence            44999988 9999999999999776633      33    469999999765   89996 779999998755

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=2.1e-06  Score=89.76  Aligned_cols=83  Identities=25%  Similarity=0.668  Sum_probs=63.4

Q ss_pred             cCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecccC
Q 013033           51 PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILG  130 (451)
Q Consensus        51 ~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~g  130 (451)
                      ++|.||+. -.|++++.|.|.|......            ...+|++|+..-.|+  +.|+|.|..-...          
T Consensus         4 ~dcyff~y-s~cKk~d~c~~rh~E~al~------------n~t~C~~w~~~~~C~--k~C~YRHSe~~~k----------   58 (667)
T KOG4791|consen    4 EDCYFFFY-STCKKGDSCPFRHCEAALG------------NETVCTLWQEGRCCR--KVCRYRHSEIDKK----------   58 (667)
T ss_pred             ccchhhhh-hhhhccCcCcchhhHHHhc------------CcchhhhhhhcCccc--ccccchhhHHhhh----------
Confidence            57999984 8999999999999876431            234799999744576  4999999765322          


Q ss_pred             CCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033          131 LPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus       131 ~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                          ..+.+|.++++...|. .++|-|.|..|.
T Consensus        59 ----r~e~~CYwe~~p~gC~-k~~CgfRH~~pP   86 (667)
T KOG4791|consen   59 ----RSEIPCYWENQPTGCQ-KLNCGFRHNRPP   86 (667)
T ss_pred             ----cCcccceeecCCCccC-CCccccccCCCc
Confidence                1356799999844498 699999997654

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.10  E-value=1.5e-05  Score=84.84  Aligned_cols=86  Identities=24%  Similarity=0.457  Sum_probs=63.2

Q ss_pred             CCCCCCCCCCCCCchhhh-ccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCC
Q 013033           60 GLCGYGSNCRFNHPAYAA-QGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEK  138 (451)
Q Consensus        60 G~C~~G~~C~F~H~~~~~-~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~  138 (451)
                      +.|.-+..|.|.|+.... .-.-.+-.|    .-..|.-|.| |.|+.||.|.|.|..-+..-.         |.++++.
T Consensus       207 ~~shDwteCPf~HpgEkARRRDPRkyhY----s~tpCPefrk-G~C~rGD~CEyaHgvfEcwLH---------Pa~YRT~  272 (528)
T KOG1595|consen  207 PRSHDWTECPFAHPGEKARRRDPRKYHY----SSTPCPEFRK-GSCERGDSCEYAHGVFECWLH---------PARYRTR  272 (528)
T ss_pred             ccCCCcccCCccCCCcccccCCcccccc----cCccCccccc-CCCCCCCccccccceehhhcC---------HHHhccc
Confidence            578888999999975422 110011122    3357999996 999999999999997654322         5578888


Q ss_pred             CCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033          139 SCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus       139 ~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                      .|++-   |.|+. .-|-|+|....
T Consensus       273 ~CkDg---~~C~R-rvCfFAH~~eq  293 (528)
T KOG1595|consen  273 KCKDG---GYCPR-RVCFFAHSPEQ  293 (528)
T ss_pred             cccCC---CCCcc-ceEeeecChHH
Confidence            99984   88997 99999999765

>smart00356 ZnF_C3H1 zinc finger

Probab=97.79  E-value=1.5e-05  Score=51.46  Aligned_cols=26  Identities=31%  Similarity=0.911  Sum_probs=22.9

Q ss_pred             CCCcCCccccccccCCCCCCCccCCCC
Q 013033          330 PGQAICSNYSMYGICKFGPTCRFDHPY  356 (451)
Q Consensus       330 ~~t~~C~~y~~~G~CkfG~~C~F~H~~  356 (451)
                      +++.+|++| ++|.|++|++|+|.|..
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            567799999 66999999999999973

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.75  E-value=1.4e-05  Score=84.19  Aligned_cols=61  Identities=30%  Similarity=0.750  Sum_probs=53.3

Q ss_pred             CCccccchhcc--ccccCCCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCC
Q 013033          285 DQPDCRYYMNT--GTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP  355 (451)
Q Consensus       285 ~~~lC~~f~~t--G~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~  355 (451)
                      ...||.-....  -.|.||++|||.|+.+........+|.+          -|.+|...|.|.||-+|||.-.
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~----------~Cp~f~s~G~Cp~G~~CRFl~a  137 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGP----------SCPVFESLGFCPYGFKCRFLGA  137 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcccCC----------ccceeeccccCCccceeehhhc
Confidence            46789999886  5799999999999999988777666665          8999999999999999999744

>smart00356 ZnF_C3H1 zinc finger

Probab=97.74  E-value=1.8e-05  Score=51.12  Aligned_cols=25  Identities=40%  Similarity=1.089  Sum_probs=22.4

Q ss_pred             CCCccccchhccccccCCCCCccCCc
Q 013033          284 PDQPDCRYYMNTGTCKYGADCKFHHP  309 (451)
Q Consensus       284 ~~~~lC~~f~~tG~C~~G~~Ckf~H~  309 (451)
                      .++.+|++| ++|.|++|++|+|.|.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCc
Confidence            467899999 6699999999999995

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=2.1e-05  Score=82.43  Aligned_cols=53  Identities=26%  Similarity=0.783  Sum_probs=41.8

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 013033           92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (451)
Q Consensus        92 ~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~  162 (451)
                      .+.|.||+ ...||+++.|.|.|......               ....|.+|+..--|+  +.|+|.|.+-
T Consensus         3 ~~dcyff~-ys~cKk~d~c~~rh~E~al~---------------n~t~C~~w~~~~~C~--k~C~YRHSe~   55 (667)
T KOG4791|consen    3 GEDCYFFF-YSTCKKGDSCPFRHCEAALG---------------NETVCTLWQEGRCCR--KVCRYRHSEI   55 (667)
T ss_pred             cccchhhh-hhhhhccCcCcchhhHHHhc---------------CcchhhhhhhcCccc--ccccchhhHH
Confidence            35799999 59999999999999876433               235699999854455  5999999864

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.59  E-value=1.4e-05  Score=79.55  Aligned_cols=76  Identities=25%  Similarity=0.647  Sum_probs=52.3

Q ss_pred             CCCCCCCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCc-----------------------cccccccc
Q 013033           42 SPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERN-----------------------GQPDCGYY   98 (451)
Q Consensus        42 ~~~p~rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~-----------------------~~p~C~~F   98 (451)
                      ..--+-|+..+|.||.. |.|..|+.|+|+|+............|+...                       ...+|+||
T Consensus        84 v~~gvDPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfF  162 (343)
T KOG1763|consen   84 VPKGVDPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFF  162 (343)
T ss_pred             cccCCCchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHH
Confidence            33456778899999995 9999999999999987532221111222111                       12389999


Q ss_pred             cc------cc---cCCCCC-CCCCCCCCCC
Q 013033           99 LK------TG---TCKYGS-TCKYHHPKDR  118 (451)
Q Consensus        99 lk------tG---~Ck~G~-~CrF~H~~~~  118 (451)
                      +.      .|   .|.+|. .|-|.|....
T Consensus       163 LeAvE~~kYGWfW~CPnGg~~C~YrHaLP~  192 (343)
T KOG1763|consen  163 LEAVENGKYGWFWECPNGGDKCIYRHALPE  192 (343)
T ss_pred             HHHHhcCCccceeECCCCCCeeeeeecCCc
Confidence            84      22   599875 8999998764

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.42  E-value=4.9e-05  Score=80.30  Aligned_cols=63  Identities=22%  Similarity=0.581  Sum_probs=49.0

Q ss_pred             cccccccccc--ccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033           92 QPDCGYYLKT--GTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus        92 ~p~C~~Flkt--G~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                      ..+|.-....  ..|.||++|||.|+.....+...         ......|++|...|+|++|-.|||+-....
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~---------~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld  140 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKA---------PDIGPSCPVFESLGFCPYGFKCRFLGAHLD  140 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHHHHHhccC---------cccCCccceeeccccCCccceeehhhcccC
Confidence            4589999875  37999999999999986544321         122367999999999999999999755444

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.14  E-value=0.00011  Score=73.18  Aligned_cols=74  Identities=26%  Similarity=0.614  Sum_probs=52.8

Q ss_pred             CCCCccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCC------------------CC-CCcCCcccc----
Q 013033          283 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPS------------------RP-GQAICSNYS----  339 (451)
Q Consensus       283 r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~------------------r~-~t~~C~~y~----  339 (451)
                      -|+..+|-+|.. |.|..|+.|+|+|+....+...-..|-+.....                  ++ ...+|+||.    
T Consensus        89 DPKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE  167 (343)
T KOG1763|consen   89 DPKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVE  167 (343)
T ss_pred             CchHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHh
Confidence            378899999988 999999999999988876655432222211111                  11 234999997    


Q ss_pred             --ccc---cCCCCC-CCccCCCCC
Q 013033          340 --MYG---ICKFGP-TCRFDHPYA  357 (451)
Q Consensus       340 --~~G---~CkfG~-~C~F~H~~~  357 (451)
                        +||   .|++|- .|.|.|-+.
T Consensus       168 ~~kYGWfW~CPnGg~~C~YrHaLP  191 (343)
T KOG1763|consen  168 NGKYGWFWECPNGGDKCIYRHALP  191 (343)
T ss_pred             cCCccceeECCCCCCeeeeeecCC
Confidence              455   499876 699999865

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.72  E-value=0.00042  Score=67.25  Aligned_cols=74  Identities=31%  Similarity=0.683  Sum_probs=53.0

Q ss_pred             CCCCccccchhccccccCCCCCccCCcchhhhccccccC----------CCCC-CCCCCCCcCCcccc------ccc---
Q 013033          283 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNI----------GPLG-LPSRPGQAICSNYS------MYG---  342 (451)
Q Consensus       283 r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l----------~p~~-~p~r~~t~~C~~y~------~~G---  342 (451)
                      -+++.+|-.|.. +.|..|+.|+|+|+.++.+...-.+|          -|++ .|.--...+|+||.      +||   
T Consensus        82 dpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W  160 (299)
T COG5252          82 DPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGW  160 (299)
T ss_pred             CchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCcccee
Confidence            478899999988 99999999999999888776543211          1222 22222345999997      334   


Q ss_pred             cCCCC-CCCccCCCCC
Q 013033          343 ICKFG-PTCRFDHPYA  357 (451)
Q Consensus       343 ~CkfG-~~C~F~H~~~  357 (451)
                      .|++| .+|-|.|-+.
T Consensus       161 ~CPng~~~C~y~H~Lp  176 (299)
T COG5252         161 TCPNGNMRCSYIHKLP  176 (299)
T ss_pred             eCCCCCceeeeeeccC
Confidence            49988 5699999865

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.35  E-value=0.0018  Score=67.22  Aligned_cols=32  Identities=28%  Similarity=0.923  Sum_probs=26.7

Q ss_pred             CCCCccccccccccccccCCCCCCCCCCCCCCC
Q 013033           86 LPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (451)
Q Consensus        86 ~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~  118 (451)
                      +|.-..+..|.||+. |.|+|+++|||+|....
T Consensus       134 ~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  134 TPTHESMKPCKFFLE-GRCRFGENCRFSHGLDV  165 (486)
T ss_pred             cCcchhhccchHhhc-cccccCcccccccCccc
Confidence            455556678999995 99999999999998764

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=96.15  E-value=0.012  Score=64.49  Aligned_cols=103  Identities=28%  Similarity=0.618  Sum_probs=57.2

Q ss_pred             cCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCC-----CCCCCCCCCCCCCCCCce
Q 013033           51 PDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYG-----STCKYHHPKDRNGAGPVS  125 (451)
Q Consensus        51 ~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G-----~~CrF~H~~~~~~~~~~~  125 (451)
                      .+|+||..   |. +..|.|.|+......    ..+|+..-...|.+-.  -.|+||     ..|.|.|........+-.
T Consensus       545 ~~Cky~~~---Ct-~a~Ce~~HPtaa~~~----~s~p~k~fa~~~~ks~--p~Ck~~~kCtasDC~~sH~~~~~pvq~t~  614 (681)
T KOG3702|consen  545 TRCKYGPA---CT-SAECEFAHPTAAENA----KSLPNKKFASKCLKSH--PGCKFGKKCTASDCNYSHAGRRIPVQPTR  614 (681)
T ss_pred             ccccCCCc---CC-chhhhhcCCcchhhh----hccccccccccceecc--cccccccccccccCcccccCCCCCCcccc
Confidence            56999986   99 889999999764211    1112111112233332  234444     568899987654211100


Q ss_pred             ecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 013033          126 FNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPSSLGTA  168 (451)
Q Consensus       126 ~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~~~g~~  168 (451)
                      +... .+.-....+|+|+-.   |+ ...|+|.|++.-.+++.
T Consensus       615 ip~~-~~~~ti~~~CrY~pn---Cr-nm~C~F~HPk~cRf~~~  652 (681)
T KOG3702|consen  615 IPPP-FPGGTIRGLCRYRPN---CR-NMQCKFYHPKTCRFNTN  652 (681)
T ss_pred             CCCC-CCCCCccccceeccC---cC-CccccccCCcccccccc
Confidence            0000 011123467988654   88 58999999987655433

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.12  E-value=0.0019  Score=62.78  Aligned_cols=75  Identities=25%  Similarity=0.571  Sum_probs=51.2

Q ss_pred             CCCCCCCCcCCccccccCCCCCCCCCCCCCchhhhcccc----------cccc--CCCCcc---ccccccccc---cc--
Q 013033           43 PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQ----------YREE--LPERNG---QPDCGYYLK---TG--  102 (451)
Q Consensus        43 ~~p~rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~----------~~~~--~Per~~---~p~C~~Flk---tG--  102 (451)
                      .--+-|++.+|..|. .+.|..|+.|+|+|+.+......          ..+.  +-+|+.   -.+|+||+.   +|  
T Consensus        78 ragvdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkY  156 (299)
T COG5252          78 RAGVDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKY  156 (299)
T ss_pred             ccccCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCc
Confidence            445667889999999 59999999999999976432111          0111  112332   248999974   12  


Q ss_pred             ----cCCCC-CCCCCCCCCCC
Q 013033          103 ----TCKYG-STCKYHHPKDR  118 (451)
Q Consensus       103 ----~Ck~G-~~CrF~H~~~~  118 (451)
                          .|.+| .+|-|.|....
T Consensus       157 gw~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         157 GWGWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             cceeeCCCCCceeeeeeccCc
Confidence                58887 58999998764

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.01  E-value=0.0043  Score=64.50  Aligned_cols=56  Identities=29%  Similarity=0.729  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCCCCCC---CCCc-eec-------ccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 013033          106 YGSTCKYHHPKDRNG---AGPV-SFN-------ILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (451)
Q Consensus       106 ~G~~CrF~H~~~~~~---~~~~-~~~-------~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~  162 (451)
                      -|++|.+-|......   .+.+ .+.       ..-+|.....++|.||+. |.|+||.+|||.|...
T Consensus        98 ~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVlfl~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen   98 DGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVLFLTPTHESMKPCKFFLE-GRCRFGENCRFSHGLD  164 (486)
T ss_pred             cCCcccccccCCccceecceeEEeeccccceEEEeecCcchhhccchHhhc-cccccCcccccccCcc
Confidence            377888887765431   1110 000       011244445688999997 9999999999999864

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.86  E-value=0.0051  Score=37.24  Aligned_cols=19  Identities=32%  Similarity=0.990  Sum_probs=16.7

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q 013033           94 DCGYYLKTGTCKYGSTCKYHHP  115 (451)
Q Consensus        94 ~C~~FlktG~Ck~G~~CrF~H~  115 (451)
                      .|+||..   |+++++|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            3998875   999999999996

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.64  E-value=0.0072  Score=36.56  Aligned_cols=19  Identities=47%  Similarity=1.106  Sum_probs=16.8

Q ss_pred             CCccccccCCCCCCCCCCCCCc
Q 013033           52 DCLFYRRTGLCGYGSNCRFNHP   73 (451)
Q Consensus        52 ~C~~f~rtG~C~~G~~C~F~H~   73 (451)
                      .|+||..   |++|++|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            4998874   999999999996

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=94.64  E-value=0.096  Score=57.70  Aligned_cols=23  Identities=26%  Similarity=0.761  Sum_probs=19.8

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCC
Q 013033           92 QPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (451)
Q Consensus        92 ~p~C~~FlktG~Ck~G~~CrF~H~~~~  118 (451)
                      ..+|.|+..   |. +..|.|.|+...
T Consensus       544 l~~Cky~~~---Ct-~a~Ce~~HPtaa  566 (681)
T KOG3702|consen  544 LTRCKYGPA---CT-SAECEFAHPTAA  566 (681)
T ss_pred             eccccCCCc---CC-chhhhhcCCcch
Confidence            458999997   98 899999999765

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.46  E-value=0.014  Score=55.67  Aligned_cols=26  Identities=42%  Similarity=0.972  Sum_probs=23.9

Q ss_pred             cCCccccccCCCCCCCCCCCCCchhh
Q 013033           51 PDCLFYRRTGLCGYGSNCRFNHPAYA   76 (451)
Q Consensus        51 ~~C~~f~rtG~C~~G~~C~F~H~~~~   76 (451)
                      .+|+.|..||.|.||+.|+|+|....
T Consensus       142 dVCKdyk~TGYCGYGDsCKflH~R~D  167 (259)
T COG5152         142 DVCKDYKETGYCGYGDSCKFLHDRSD  167 (259)
T ss_pred             ccccchhhcccccCCchhhhhhhhhh
Confidence            57999999999999999999999763

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.42  E-value=0.014  Score=55.71  Aligned_cols=27  Identities=30%  Similarity=0.942  Sum_probs=24.4

Q ss_pred             cCCccccccccCCCCCCCccCCCCCCC
Q 013033          333 AICSNYSMYGICKFGPTCRFDHPYAGY  359 (451)
Q Consensus       333 ~~C~~y~~~G~CkfG~~C~F~H~~~~~  359 (451)
                      -+|+.|.++|+|-||+.|+|.|....+
T Consensus       142 dVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         142 DVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             ccccchhhcccccCCchhhhhhhhhhh
Confidence            499999999999999999999997643

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.61  E-value=0.092  Score=54.44  Aligned_cols=25  Identities=40%  Similarity=0.984  Sum_probs=23.1

Q ss_pred             cccccccccccCCCCCCCCCCCCCCC
Q 013033           93 PDCGYYLKTGTCKYGSTCKYHHPKDR  118 (451)
Q Consensus        93 p~C~~FlktG~Ck~G~~CrF~H~~~~  118 (451)
                      .+|+||++ |.|+||+.|||.|++..
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCch
Confidence            68999997 99999999999999883

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=89.32  E-value=0.11  Score=51.37  Aligned_cols=29  Identities=28%  Similarity=0.555  Sum_probs=24.8

Q ss_pred             CCCCCcCCccccccccCCCCCCCccCCCCC
Q 013033          328 SRPGQAICSNYSMYGICKFGPTCRFDHPYA  357 (451)
Q Consensus       328 ~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~  357 (451)
                      .+++...|..|+. +.|.+|..|.|.|...
T Consensus       148 T~~rea~C~~~e~-~~C~rG~~CnFmH~k~  176 (260)
T KOG2202|consen  148 TDFREAICGQFER-TECSRGGACNFMHVKR  176 (260)
T ss_pred             Cchhhhhhccccc-ccCCCCCcCcchhhhh
Confidence            4556679999998 6999999999999963

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.72  E-value=0.14  Score=51.78  Aligned_cols=25  Identities=44%  Similarity=1.003  Sum_probs=23.1

Q ss_pred             cCCccccccCCCCCCCCCCCCCchh
Q 013033           51 PDCLFYRRTGLCGYGSNCRFNHPAY   75 (451)
Q Consensus        51 ~~C~~f~rtG~C~~G~~C~F~H~~~   75 (451)
                      .+|+.|-.||.|.||+.|+|+|...
T Consensus       187 DicKdykeTgycg~gdSckFlh~r~  211 (313)
T KOG1813|consen  187 DICKDYKETGYCGYGDSCKFLHDRS  211 (313)
T ss_pred             hhhhhhHhhCcccccchhhhhhhhh
Confidence            4599999999999999999999865

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.72  E-value=0.13  Score=51.97  Aligned_cols=26  Identities=38%  Similarity=1.028  Sum_probs=23.8

Q ss_pred             CCccccccccCCCCCCCccCCCCCCC
Q 013033          334 ICSNYSMYGICKFGPTCRFDHPYAGY  359 (451)
Q Consensus       334 ~C~~y~~~G~CkfG~~C~F~H~~~~~  359 (451)
                      +|+.|..||+|-||+.|+|.|...-+
T Consensus       188 icKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  188 ICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             hhhhhHhhCcccccchhhhhhhhhhc
Confidence            89999999999999999999997633

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=88.56  E-value=0.13  Score=50.98  Aligned_cols=29  Identities=31%  Similarity=0.553  Sum_probs=24.7

Q ss_pred             CCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033          134 RQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus       134 r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                      +..+..|..|.+ +.|.+|..|-|.|....
T Consensus       149 ~~rea~C~~~e~-~~C~rG~~CnFmH~k~~  177 (260)
T KOG2202|consen  149 DFREAICGQFER-TECSRGGACNFMHVKRL  177 (260)
T ss_pred             chhhhhhccccc-ccCCCCCcCcchhhhhh
Confidence            445688999997 69999999999999853

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=87.62  E-value=0.31  Score=31.03  Aligned_cols=22  Identities=36%  Similarity=0.942  Sum_probs=18.4

Q ss_pred             cccccccccccCCCCCCCCCCCC
Q 013033           93 PDCGYYLKTGTCKYGSTCKYHHP  115 (451)
Q Consensus        93 p~C~~FlktG~Ck~G~~CrF~H~  115 (451)
                      ++|.|-++.|.|. .+.|.|.|-
T Consensus         1 ~lC~yEl~Gg~Cn-d~~C~~QHf   22 (23)
T PF10650_consen    1 PLCPYELTGGVCN-DPDCEFQHF   22 (23)
T ss_pred             CCCccccCCCeeC-CCCCCcccc
Confidence            4799999755997 789999995

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.66  E-value=0.3  Score=50.71  Aligned_cols=25  Identities=44%  Similarity=1.160  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033          138 KSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus       138 ~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                      .+|+||++ |.|+||+.|||.|..+.
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCch
Confidence            68999997 99999999999999984

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=80.50  E-value=1.3  Score=28.21  Aligned_cols=22  Identities=36%  Similarity=0.939  Sum_probs=18.6

Q ss_pred             CCCCCCCCCCcCCCCCCCCCCCC
Q 013033          138 KSCPYYMRTGSCKFGVACKFHHP  160 (451)
Q Consensus       138 ~~C~~y~k~G~C~~G~~CrF~H~  160 (451)
                      ++|.|-+.+|.|. -..|.|.|.
T Consensus         1 ~lC~yEl~Gg~Cn-d~~C~~QHf   22 (23)
T PF10650_consen    1 PLCPYELTGGVCN-DPDCEFQHF   22 (23)
T ss_pred             CCCccccCCCeeC-CCCCCcccc
Confidence            3699999866997 589999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	451
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	5e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-12
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-05
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	4e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-07
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	4e-07
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	8e-07
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-05
2rhk_C	72	Cleavage and polyadenylation specificity factor su	8e-05
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	2e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	2e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	4e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C  Y ++G C+YG+ C++ H       G           +   + C  +   G C +G  
Sbjct: 15  CRTYSESGRCRYGAKCQFAH-------GLGELRQANRHPKYKTELCHKFKLQGRCPYGSR 67

Query: 155 CKFHHPQ 161
           C F H  
Sbjct: 68  CHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 66.1 bits (161), Expect = 5e-14
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           CR Y  +G C+YGA C+F H            +       +    +C  + + G C +G 
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLG--------ELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 349 TCRFDHP 355
            C F H 
Sbjct: 67  RCHFIHN 73

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  Y  +G C YG+ C+F H      G   +     +     C  +   G C YGS C +
Sbjct: 15  CRTYSESGRCRYGAKCQFAHG----LGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHF 70

Query: 113 HHPKDRN 119
            H    +
Sbjct: 71  IHNPTED 77

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKE 311
           C  +   G C YG+ C F H   
Sbjct: 53  CHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 35 GGGVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHP 73
          G G  + +    +     C  ++  G C YGS C F H 
Sbjct: 35 GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHN 73

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 24/81 (29%)

Query: 274 SASSQNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQA 333
           S+ S     +  +  C++Y+ TG C    +C + H                         
Sbjct: 2   SSGSSGELPKKREL-CKFYI-TGFCARAENCPYMHG----------------------DF 37

Query: 334 ICSNYSMYGICKFGPTCRFDH 354
            C  Y   G C  G  C F H
Sbjct: 38  PCKLYHTTGNCINGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 20/78 (25%)

Query: 37  GVAQASPYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCG 96
           G + +S    +  E  C FY   G C    NC + H  +                   C 
Sbjct: 1   GSSGSSGELPKKREL-CKFYIT-GFCARAENCPYMHGDFP------------------CK 40

Query: 97  YYLKTGTCKYGSTCKYHH 114
            Y  TG C  G  C + H
Sbjct: 41  LYHTTGNCINGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 46.2 bits (109), Expect = 8e-07
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 22/65 (33%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C +Y+ TG C     C Y H                      +  C  Y  TG+C  G  
Sbjct: 16  CKFYI-TGFCARAENCPYMH---------------------GDFPCKLYHTTGNCINGDD 53

Query: 155 CKFHH 159
           C F H
Sbjct: 54  CMFSH 58

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 15/65 (23%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  + R GLC  G  C F H               +     +C +Y K G C     C +
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHE-------------YDMTKMSECYFYSKFGECS-NKECPF 63

Query: 113 HHPKD 117
            H   
Sbjct: 64  LHIDP 68

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 18/70 (25%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C ++L+ G CK G  C++ H  D                      C +Y + G C     
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYD----------------MTKMSECYFYSKFGECS-NKE 60

Query: 155 CKFHHPQPSS 164
           C F H  P S
Sbjct: 61  CPFLHIDPES 70

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 19/67 (28%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           C++++  G CK G  C+F H  +                ++   + C  YS +G C    
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYD---------------MTK--MSECYFYSKFGECS-NK 59

Query: 349 TCRFDHP 355
            C F H 
Sbjct: 60  ECPFLHI 66

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 19/66 (28%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGP 348
           C++++  G CK G  C+F H                          C  YS +G C    
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHE-----------------YDMTKMPECYFYSKFGEC-SNK 53

Query: 349 TCRFDH 354
            C F H
Sbjct: 54  ECPFLH 59

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 15/71 (21%)

Query: 53  CLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKY 112
           C  + R GLC  G  C F H               +    P+C +Y K G C     C +
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHE-------------YDMTKMPECYFYSKFGECS-NKECPF 57

Query: 113 HHPKDRNGAGP 123
            H    +    
Sbjct: 58  LHIDPESKIKD 68

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 18/70 (25%)

Query: 95  CGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVA 154
           C ++L+ G CK G  C++ H  D                      C +Y + G C     
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHEYD----------------MTKMPECYFYSKFGEC-SNKE 54

Query: 155 CKFHHPQPSS 164
           C F H  P S
Sbjct: 55  CPFLHIDPES 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	451
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.58
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.48
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.42
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.41
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.3
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.29
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.07
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.07
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.06
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.06
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.89
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.85
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.84
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.75
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.73
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.67
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	98.24
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.22
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.1
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	97.18
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.98
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	96.54
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.73
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	94.12
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.62
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	90.2

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.58  E-value=5.2e-16  Score=124.49  Aligned_cols=67  Identities=30%  Similarity=0.732  Sum_probs=31.4

Q ss_pred             CCCCccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCC
Q 013033          283 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  357 (451)
Q Consensus       283 r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~  357 (451)
                      ++++++|++|+++|.|+||++|+|+|+.++++...        ...++++.+|++|.++|.|+||.+|+|.|+..
T Consensus         9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A            9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred             CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            46999999999889999999999999999988643        12367789999999889999999999999864

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.8e-14  Score=115.14  Aligned_cols=68  Identities=29%  Similarity=0.660  Sum_probs=57.1

Q ss_pred             CCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCcee
Q 013033           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSF  126 (451)
Q Consensus        47 rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~  126 (451)
                      ..++++|+||++ |.|++|++|+|+|+....             ++++|+||+++|.|. |++|+|.|.....       
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~-------   64 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMPECYFYSKFGECS-NKECPFLHIDPES-------   64 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS-------
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCccccccC-------------cCCCCcccCCCCccC-CCCeeccCCCccc-------
Confidence            346789999997 999999999999987642             356899999779999 9999999997632       


Q ss_pred             cccCCCCCCCCCCCCCCCC
Q 013033          127 NILGLPMRQDEKSCPYYMR  145 (451)
Q Consensus       127 ~~~g~P~r~~~~~C~~y~k  145 (451)
                               +.++|.+|++
T Consensus        65 ---------~~~~C~~f~~   74 (77)
T 2d9n_A           65 ---------KIKDCPWSGP   74 (77)
T ss_dssp             ---------SCSSSSCCTT
T ss_pred             ---------cCCCCccccc
Confidence                     3467999996

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.42  E-value=3.4e-14  Score=119.82  Aligned_cols=87  Identities=24%  Similarity=0.424  Sum_probs=68.3

Q ss_pred             CCCCCCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCC
Q 013033           43 PYPARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAG  122 (451)
Q Consensus        43 ~~p~rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~  122 (451)
                      .+..++++.+|+||+ +|.|++|++|+|+|+                  +.+|++|++.|.|++|++|+|+|+.......
T Consensus         6 ~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~------------------~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~   66 (98)
T 2cqe_A            6 SGELPKKRELCKFYI-TGFCARAENCPYMHG------------------DFPCKLYHTTGNCINGDDCMFSHDPLTEETR   66 (98)
T ss_dssp             CCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS------------------SSBCSHHHHTSCCSSCTTCSSBCCCCCHHHH
T ss_pred             cCCCCCCCccCcccc-cCcCCCCCCCCCCCC------------------CCcCcCcccCCcCCCCCCCcccCCCCcccch
Confidence            345567899999998 599999999999998                  1369999767999999999999996532111


Q ss_pred             C---ceecccCCCCCCCCCCCCCCCCCCc
Q 013033          123 P---VSFNILGLPMRQDEKSCPYYMRTGS  148 (451)
Q Consensus       123 ~---~~~~~~g~P~r~~~~~C~~y~k~G~  148 (451)
                      .   ..++..+.+.+.++++|.++.++|.
T Consensus        67 ~~l~~~l~~~~~~~~~~e~e~~~~~k~~~   95 (98)
T 2cqe_A           67 ELLDKMLADDAEAGAEDEKEVEELKKSGP   95 (98)
T ss_dssp             HHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred             hHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence            1   1234446678889999999999875

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.41  E-value=8e-14  Score=111.66  Aligned_cols=69  Identities=28%  Similarity=0.583  Sum_probs=29.6

Q ss_pred             CCCCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033           45 PARPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (451)
Q Consensus        45 p~rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~  117 (451)
                      ..++++.+|++|+++|.|++|++|+|+|+..+.....    ...+.++.+|++|.++|.|++|++|+|+|...
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~----~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN----RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc----ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            4577899999998889999999999999976432211    11234667899888789999999999999864

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.30  E-value=1.5e-12  Score=109.80  Aligned_cols=58  Identities=26%  Similarity=0.575  Sum_probs=50.2

Q ss_pred             CCCCCCCCCccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCC
Q 013033          278 QNLPERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYA  357 (451)
Q Consensus       278 ~~~p~r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~  357 (451)
                      ..+..+.++.+|+||+ +|.|++|++|+|+|+                      +.+|++|.++|.|++|.+|+|.|+..
T Consensus         5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A            5 SSGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             ccCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            3455667999999997 599999999999996                      45899998779999999999999965


Q ss_pred             C
Q 013033          358 G  358 (451)
Q Consensus       358 ~  358 (451)
                      .
T Consensus        62 ~   62 (98)
T 2cqe_A           62 T   62 (98)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.29  E-value=6.7e-13  Score=105.82  Aligned_cols=57  Identities=28%  Similarity=0.621  Sum_probs=49.3

Q ss_pred             CCCCcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCC
Q 013033           47 RPGEPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (451)
Q Consensus        47 rpg~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~  118 (451)
                      ..++++|+||++ |.|++|++|+|+|+.+..             ++++|+||++.|.|.+ ++|+|.|....
T Consensus        13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-------------KMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CCcCeeCHHHhc-CCCCCCCCCCCccccccc-------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            456789999998 999999999999997532             4578999997799998 99999998764

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=5.4e-11  Score=95.79  Aligned_cols=56  Identities=29%  Similarity=0.630  Sum_probs=48.5

Q ss_pred             CCCccccchhccccccCCCCCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCCC
Q 013033          284 PDQPDCRYYMNTGTCKYGADCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAG  358 (451)
Q Consensus       284 ~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~  358 (451)
                      .++++|+||++ |.|++|++|+|+|+.+..                 ++++|++|.++|.|. |++|+|.|....
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence            47899999999 999999999999965421                 256899999999999 999999999753

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=2.6e-11  Score=102.17  Aligned_cols=60  Identities=37%  Similarity=0.706  Sum_probs=48.2

Q ss_pred             CCcCCccccccCCCCCCC-CCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033           49 GEPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (451)
Q Consensus        49 g~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~  117 (451)
                      +.++|++|++ |.|.+|+ .|+|+|+.+....      .+...++++|++|++ |.|.++ +|+|.|+..
T Consensus        19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           19 KLEVCREFQR-GNCARGETDCRFAHPADSTMI------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             EEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhhhHHHhc-CcCCCCCCCCCCcCCchhccc------cccCCccccchhhcc-CCCCCC-CcCccCChH
Confidence            3579999998 9999999 8999999864210      112235689999997 999988 999999875

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.06  E-value=5e-11  Score=94.34  Aligned_cols=59  Identities=39%  Similarity=0.751  Sum_probs=46.7

Q ss_pred             CcCCccccccCCCCCCC-CCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033           50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (451)
Q Consensus        50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~  117 (451)
                      .++|++|++ |.|.+|+ .|+|+|+.+....      -+...++++|++|++ |.|.+| +|+|.|...
T Consensus         6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A            6 LEVCREYQR-GNCNRGENDCRFAHPADSTMI------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             chhCHHHhc-CCCCCCCCCCCCccCcccccc------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            368999996 9999999 5999998763210      012335689999997 999998 999999865

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.06  E-value=2.2e-11  Score=96.99  Aligned_cols=55  Identities=31%  Similarity=0.739  Sum_probs=47.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033           91 GQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus        91 ~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                      ++.+|+||++ |.|++|++|+|+|+....                ..++|+||++.|.|.+ ++|+|.|..+.
T Consensus        15 k~~vCk~fl~-G~C~~G~~C~fsH~~~~~----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           15 KTVVCKHWLR-GLCKKGDQCEFLHEYDMT----------------KMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             CCSBCHHHHT-TCCCCGGGSSSBCSCCTT----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             cCeeCHHHhc-CCCCCCCCCCCccccccc----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            5678999997 999999999999997532                2457999997799998 99999999875

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=2.3e-10  Score=96.40  Aligned_cols=69  Identities=30%  Similarity=0.660  Sum_probs=55.0

Q ss_pred             cCCCCCCCCCccccchhccccccCCC-CCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCC
Q 013033          277 SQNLPERPDQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHP  355 (451)
Q Consensus       277 ~~~~p~r~~~~lC~~f~~tG~C~~G~-~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~  355 (451)
                      .+++....+.++|++|++ |.|+.|+ .|+|+|+.+.+...          +...+..+|.+|.+ |.|..| .|+|.|+
T Consensus        11 ~~K~~~~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~   77 (98)
T 2e5s_A           11 TQKLLRTDKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHP   77 (98)
T ss_dssp             CCCCCCSSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCC
T ss_pred             cccccChhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCC
Confidence            345555566799999999 9999999 79999987765321          12345779999998 999999 9999999


Q ss_pred             CCC
Q 013033          356 YAG  358 (451)
Q Consensus       356 ~~~  358 (451)
                      ...
T Consensus        78 ~~~   80 (98)
T 2e5s_A           78 PAH   80 (98)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            863

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.85  E-value=1e-09  Score=89.65  Aligned_cols=57  Identities=35%  Similarity=0.683  Sum_probs=46.0

Q ss_pred             CcCCccccccCCCCCCC-CCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033           50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (451)
Q Consensus        50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~  117 (451)
                      .++|++|++ |.|.+|+ .|+|+|+......        +....++|.+|++ |.|..+ .|+|.|+..
T Consensus         9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~--------~~~~~~vC~dflk-G~C~r~-~C~y~H~~~   66 (83)
T 3d2n_A            9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPP   66 (83)
T ss_dssp             EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE--------ETTEEECCHHHHT-TCCCCS-SCSSCCCCH
T ss_pred             chhcHHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeehhHhhh-ccccCC-CcceeCChH
Confidence            468999998 9999997 9999999763210        0124578999997 999987 899999875

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.84  E-value=6.7e-10  Score=87.81  Aligned_cols=62  Identities=31%  Similarity=0.718  Sum_probs=49.8

Q ss_pred             CCccccchhccccccCCC-CCccCCcchhhhccccccCCCCCCCCCCCCcCCccccccccCCCCCCCccCCCCCCC
Q 013033          285 DQPDCRYYMNTGTCKYGA-DCKFHHPKERIAQSAASNIGPLGLPSRPGQAICSNYSMYGICKFGPTCRFDHPYAGY  359 (451)
Q Consensus       285 ~~~lC~~f~~tG~C~~G~-~Ckf~H~~~~l~~~~~~~l~p~~~p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~~  359 (451)
                      +.++|++|++ |.|+.|+ .|+|+|+.+++...          +...++.+|++|.+ |.|..| .|+|.|+...+
T Consensus         5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A            5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred             cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence            4578999977 9999999 59999988765321          12345789999998 999999 99999997543

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.75  E-value=3.4e-09  Score=87.69  Aligned_cols=57  Identities=35%  Similarity=0.701  Sum_probs=46.3

Q ss_pred             CcCCccccccCCCCCCC-CCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCC
Q 013033           50 EPDCLFYRRTGLCGYGS-NCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKD  117 (451)
Q Consensus        50 ~~~C~~f~rtG~C~~G~-~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~  117 (451)
                      .++|++|+| |.|.+|+ .|+|+|+......        +..+.++|.+|++ |.|..+ .|+|.|+..
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v--------~~~~~~vC~dflk-G~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQV--------ENGRVIACFDSLK-GRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC--------BTTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCccccc--------cCCceeeehhhhh-CcCCCC-CcceecCHH
Confidence            478999998 9999998 9999999764210        1124689999997 999976 899999875

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.73  E-value=2.5e-09  Score=87.37  Aligned_cols=59  Identities=27%  Similarity=0.634  Sum_probs=47.1

Q ss_pred             cccccccccccccCCCCC-CCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033           91 GQPDCGYYLKTGTCKYGS-TCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus        91 ~~p~C~~FlktG~Ck~G~-~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                      +.++|++|++ |.|+.|+ .|+|+|+.......           .....+|.+|++ |.|..+ .|+|.|+...
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~-----------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~   67 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE-----------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH   67 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE-----------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc-----------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence            4578999998 9999997 99999998642111           122467999998 999987 9999999765

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.67  E-value=5.1e-09  Score=86.63  Aligned_cols=59  Identities=25%  Similarity=0.604  Sum_probs=47.2

Q ss_pred             cccccccccccccCCCCC-CCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 013033           91 GQPDCGYYLKTGTCKYGS-TCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQPS  163 (451)
Q Consensus        91 ~~p~C~~FlktG~Ck~G~-~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~~  163 (451)
                      +.++|++|++ |.|+.|+ .|+|+|+.......           .....+|.+|++ |.|..+ .|+|.|+.+.
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~-----------~~~~~vC~dflk-G~C~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE-----------NGRVIACFDSLK-GRCSRE-NCKYLHPPTH   75 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB-----------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCcccccc-----------CCceeeehhhhh-CcCCCC-CcceecCHHH
Confidence            3468999998 9999998 99999998753211           123467999997 999976 9999999765

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=3.3e-07  Score=71.94  Aligned_cols=30  Identities=37%  Similarity=0.750  Sum_probs=27.4

Q ss_pred             CCccccchhccccccCCCCCccCCcchhhhc
Q 013033          285 DQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  315 (451)
Q Consensus       285 ~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~  315 (451)
                      +..||++|+ +|.|+||++|+||||.+||+.
T Consensus        19 k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRYM-NGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHHH-HSCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCcccC-cCCCCCCCccCCcCCHHHHhh
Confidence            569999995 599999999999999999986

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.22  E-value=5.7e-07  Score=85.54  Aligned_cols=78  Identities=28%  Similarity=0.552  Sum_probs=59.1

Q ss_pred             CCccccccCCCC----CCCCCCCCCchhhhcccc----------------------ccccCCCCccccccccccc----c
Q 013033           52 DCLFYRRTGLCG----YGSNCRFNHPAYAAQGAQ----------------------YREELPERNGQPDCGYYLK----T  101 (451)
Q Consensus        52 ~C~~f~rtG~C~----~G~~C~F~H~~~~~~~~~----------------------~~~~~Per~~~p~C~~Flk----t  101 (451)
                      +|++|+- |.|+    .+..|+|+|+.....+..                      ...-+|     .+|.+| +    +
T Consensus        91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP-----eiC~~Y-kG~g~~  163 (229)
T 3u9g_A           91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP-----EICKSY-KGEGRK  163 (229)
T ss_dssp             CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC-----CBCTTC-CCSSSC
T ss_pred             echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc-----hHHHHh-CCCCCC
Confidence            5999994 9993    457899999976321110                      001122     479999 7    3


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 013033          102 GTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (451)
Q Consensus       102 G~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~  162 (451)
                      |.|++++.|...|.                        |.+|++ |.|+| .+|+-.|..-
T Consensus       164 g~C~~~~~C~kLHI------------------------C~~Fl~-G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          164 QTCGQPQPCERLHI------------------------CEHFTR-GNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             CSCSSSSCCCSBCS------------------------CHHHHT-TCCCC-SSCSSCCCTT
T ss_pred             CcCCCCCCCcceec------------------------cchhhc-CCcCC-CCccCccCcc
Confidence            68999999999995                        999996 99999 8999999854

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.10  E-value=1.9e-06  Score=82.04  Aligned_cols=65  Identities=23%  Similarity=0.347  Sum_probs=41.4

Q ss_pred             ccccccccccCC----CCCCCCCCCCCCCCCCCCc-------eecc-----c--CCCCCCCCCCCCCCCCC----CcCCC
Q 013033           94 DCGYYLKTGTCK----YGSTCKYHHPKDRNGAGPV-------SFNI-----L--GLPMRQDEKSCPYYMRT----GSCKF  151 (451)
Q Consensus        94 ~C~~FlktG~Ck----~G~~CrF~H~~~~~~~~~~-------~~~~-----~--g~P~r~~~~~C~~y~k~----G~C~~  151 (451)
                      +|++|+. |.|.    .+..|+|+|+.....+..+       .++.     +  ......-..+|.+| ++    |.|.+
T Consensus        91 LCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~  168 (229)
T 3u9g_A           91 LCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ  168 (229)
T ss_dssp             CCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred             echhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence            6999995 9993    3578999999875322111       0110     0  00011124789999 63    68999


Q ss_pred             CCCCCCCCC
Q 013033          152 GVACKFHHP  160 (451)
Q Consensus       152 G~~CrF~H~  160 (451)
                      ++.|...|+
T Consensus       169 ~~~C~kLHI  177 (229)
T 3u9g_A          169 PQPCERLHI  177 (229)
T ss_dssp             SSCCCSBCS
T ss_pred             CCCCcceec
Confidence            999988777

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=97.18  E-value=1.2e-06  Score=70.99  Aligned_cols=65  Identities=26%  Similarity=0.675  Sum_probs=52.1

Q ss_pred             CcCCccccccCCCCCCCCCCCCCchhhhccccccccCCCCccccccccccccccCCCCCCCCCCCCCCCCCCCCceeccc
Q 013033           50 EPDCLFYRRTGLCGYGSNCRFNHPAYAAQGAQYREELPERNGQPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNIL  129 (451)
Q Consensus        50 ~~~C~~f~rtG~C~~G~~C~F~H~~~~~~~~~~~~~~Per~~~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~  129 (451)
                      .+.|+||..   |.+ ..|.|.|+...                ..|+|+..   |+. .+|.|.|+..            
T Consensus         9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~----------------~~Cr~g~~---C~~-~~C~f~HP~~------------   52 (80)
T 2lhn_A            9 LEQCKFGTH---CTN-KRCKYRHARSH----------------IMCREGAN---CTR-IDCLFGHPIN------------   52 (80)
Confidence            467999986   999 89999997642                35999986   985 8899999732            


Q ss_pred             CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 013033          130 GLPMRQDEKSCPYYMRTGSCKFGVACKFHHPQP  162 (451)
Q Consensus       130 g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~~~  162 (451)
                              +.|+|+..   |.. ..|.|.|+.-
T Consensus        53 --------~~Crf~~~---C~n-~~C~F~Hp~g   73 (80)
T 2lhn_A           53 --------EDCRFGVN---CKN-IYCLFRHPPG   73 (80)
Confidence                    45988875   986 8999999853

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.98  E-value=0.00044  Score=54.23  Aligned_cols=28  Identities=29%  Similarity=0.502  Sum_probs=24.4

Q ss_pred             CCcCCccccccCCCCCCCCCCCCCchhhh
Q 013033           49 GEPDCLFYRRTGLCGYGSNCRFNHPAYAA   77 (451)
Q Consensus        49 g~~~C~~f~rtG~C~~G~~C~F~H~~~~~   77 (451)
                      +..+|+.|+ +|.|.||++|.|+|...+.
T Consensus        19 k~~LC~~~~-~G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           19 YFSICDRYM-NGTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             CCSBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred             CcccCcccC-cCCCCCCCccCCcCCHHHH
Confidence            448999995 6999999999999998754

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=96.54  E-value=0.00061  Score=49.84  Aligned_cols=30  Identities=40%  Similarity=0.913  Sum_probs=26.8

Q ss_pred             CCCcCCccccccccCCCCCCCccCCCCCCC
Q 013033          330 PGQAICSNYSMYGICKFGPTCRFDHPYAGY  359 (451)
Q Consensus       330 ~~t~~C~~y~~~G~CkfG~~C~F~H~~~~~  359 (451)
                      .++.+|..|..+|+|++|..|.|.|..+--
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~   47 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISGP   47 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCCC
Confidence            358899999999999999999999998743

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.73  E-value=0.0025  Score=46.59  Aligned_cols=28  Identities=21%  Similarity=0.461  Sum_probs=25.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCCCC
Q 013033           91 GQPDCGYYLKTGTCKYGSTCKYHHPKDR  118 (451)
Q Consensus        91 ~~p~C~~FlktG~Ck~G~~CrF~H~~~~  118 (451)
                      .+.+|..|...|+|++|.+|.++|+.+.
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCCC
Confidence            5678999999999999999999999874

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=94.12  E-value=0.0036  Score=50.52  Aligned_cols=42  Identities=29%  Similarity=0.736  Sum_probs=34.1

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCCCceecccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 013033           92 QPDCGYYLKTGTCKYGSTCKYHHPKDRNGAGPVSFNILGLPMRQDEKSCPYYMRTGSCKFGVACKFHHP  160 (451)
Q Consensus        92 ~p~C~~FlktG~Ck~G~~CrF~H~~~~~~~~~~~~~~~g~P~r~~~~~C~~y~k~G~C~~G~~CrF~H~  160 (451)
                      ...|+||..   |+. ..|.|.|+...                   ..|+++..   |+. ..|.|.|+
T Consensus         9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~-------------------~~Cr~g~~---C~~-~~C~f~HP   50 (80)
T 2lhn_A            9 LEQCKFGTH---CTN-KRCKYRHARSH-------------------IMCREGAN---CTR-IDCLFGHP   50 (80)
Confidence            357999986   996 99999997641                   35999875   996 88999998

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.62  E-value=0.043  Score=52.75  Aligned_cols=25  Identities=32%  Similarity=0.709  Sum_probs=22.4

Q ss_pred             cccccccccccCCCCCCCCCCCCCCC
Q 013033           93 PDCGYYLKTGTCKYGSTCKYHHPKDR  118 (451)
Q Consensus        93 p~C~~FlktG~Ck~G~~CrF~H~~~~  118 (451)
                      .+|-||.| |.|++|++|.|.|..+.
T Consensus        71 ~~C~ffak-G~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           71 FFCLFFAK-GMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             SBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred             eEcCcccc-CCCCCCCCCCccCCCCC
Confidence            47999998 99999999999998654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=90.20  E-value=0.076  Score=51.01  Aligned_cols=26  Identities=31%  Similarity=0.760  Sum_probs=22.6

Q ss_pred             CCcCCccccccCCCCCCCCCCCCCchh
Q 013033           49 GEPDCLFYRRTGLCGYGSNCRFNHPAY   75 (451)
Q Consensus        49 g~~~C~~f~rtG~C~~G~~C~F~H~~~   75 (451)
                      ....|.||.| |.|++|++|.|.|...
T Consensus        69 ~~~~C~ffak-G~C~~G~~C~y~H~lP   94 (240)
T 3u1l_A           69 QLFFCLFFAK-GMCCLGPKCEYLHHIP   94 (240)
T ss_dssp             CCSBCHHHHT-TCCSCGGGCSSBBSCC
T ss_pred             CCeEcCcccc-CCCCCCCCCCccCCCC
Confidence            3457999998 9999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	451
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.004
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	2e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	3e-04

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKE 311
           CR +  +GTCKYG  C+F H   
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFH 31

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.004
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 53 CLFYRRTGLCGYGSNCRFNH 72
          C  +  +G C YG  C+F H
Sbjct: 9  CRPFEESGTCKYGEKCQFAH 28

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKE 311
           CR +   G C YG  C F H  +
Sbjct: 11  CRTFHTIGFCPYGPRCHFIHNAD 33

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 289 CRYYMNTGTCKYGADCKFHHPKE 311
           CR Y  +G C+YGA C+F H   
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	451
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.94
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.91
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.77
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.43
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.39
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.37
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.41
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.13
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.43
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.36
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	89.42
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	88.32

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.6e-11  Score=79.97  Aligned_cols=33  Identities=36%  Similarity=0.792  Sum_probs=31.2

Q ss_pred             CCCCccccchhccccccCCCCCccCCcchhhhc
Q 013033          283 RPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQ  315 (451)
Q Consensus       283 r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~  315 (451)
                      ++||.+|++|..+|.|+||++|+|||+.+||+.
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~   35 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELRS   35 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHccC
Confidence            579999999999999999999999999999985

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=2.7e-10  Score=78.97  Aligned_cols=35  Identities=37%  Similarity=0.818  Sum_probs=32.3

Q ss_pred             CCCCCccccchhccccccCCCCCccCCcchhhhcc
Q 013033          282 ERPDQPDCRYYMNTGTCKYGADCKFHHPKERIAQS  316 (451)
Q Consensus       282 ~r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~l~~~  316 (451)
                      .++|+.+|++|+++|.|+||++|+|||+++||+..
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            45799999999999999999999999999999864

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=5.4e-10  Score=74.68  Aligned_cols=30  Identities=30%  Similarity=0.755  Sum_probs=28.1

Q ss_pred             CCCCccccchhccccccCCCCCccCCcchh
Q 013033          283 RPDQPDCRYYMNTGTCKYGADCKFHHPKER  312 (451)
Q Consensus       283 r~~~~lC~~f~~tG~C~~G~~Ckf~H~~~~  312 (451)
                      ++|+.+|++|+.+|.|+||++|+|+|+++|
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            579999999999999999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.8e-08  Score=67.19  Aligned_cols=30  Identities=27%  Similarity=0.806  Sum_probs=27.9

Q ss_pred             CCCCCcCCccccccccCCCCCCCccCCCCC
Q 013033          328 SRPGQAICSNYSMYGICKFGPTCRFDHPYA  357 (451)
Q Consensus       328 ~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~  357 (451)
                      .+|||.+|++|.+.|.|+||++|.|.|...
T Consensus         4 pkyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           4 PKYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CCccchhccccCCCCcCCCCCcccCcCCCC
Confidence            389999999999999999999999999864

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=9e-08  Score=66.00  Aligned_cols=34  Identities=32%  Similarity=0.757  Sum_probs=30.8

Q ss_pred             CCCCCCcCCccccccccCCCCCCCccCCCCCCCC
Q 013033          327 PSRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  360 (451)
Q Consensus       327 p~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~~~  360 (451)
                      ..+|||++|++|.+.|.|+||++|.|.|....+.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            4589999999999999999999999999987763

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.1e-08  Score=67.74  Aligned_cols=33  Identities=27%  Similarity=0.760  Sum_probs=30.0

Q ss_pred             CCCCCcCCccccccccCCCCCCCccCCCCCCCC
Q 013033          328 SRPGQAICSNYSMYGICKFGPTCRFDHPYAGYP  360 (451)
Q Consensus       328 ~r~~t~~C~~y~~~G~CkfG~~C~F~H~~~~~~  360 (451)
                      .+|||++|++|.++|.|+||++|.|.|....+.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            489999999999999999999999999987664

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=3.5e-05  Score=48.04  Aligned_cols=24  Identities=33%  Similarity=0.800  Sum_probs=21.6

Q ss_pred             CCcCCccccccCCCCCCCCCCCCCc
Q 013033           49 GEPDCLFYRRTGLCGYGSNCRFNHP   73 (451)
Q Consensus        49 g~~~C~~f~rtG~C~~G~~C~F~H~   73 (451)
                      +.++|+||+. |.|.+|++|.|.|.
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccC
Confidence            4578999995 99999999999996

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00014  Score=45.26  Aligned_cols=25  Identities=24%  Similarity=0.748  Sum_probs=21.9

Q ss_pred             CCCCCCCCCCCCcCCCCCCCCCCCCC
Q 013033          136 DEKSCPYYMRTGSCKFGVACKFHHPQ  161 (451)
Q Consensus       136 ~~~~C~~y~k~G~C~~G~~CrF~H~~  161 (451)
                      +..+|+||.. |+|..|++|.|.|.+
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~e   29 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHGD   29 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccCC
Confidence            3568999996 999999999999963

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0022  Score=46.12  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=21.7

Q ss_pred             CCccccccccCCCCCCCccCCCCC
Q 013033          334 ICSNYSMYGICKFGPTCRFDHPYA  357 (451)
Q Consensus       334 ~C~~y~~~G~CkfG~~C~F~H~~~  357 (451)
                      +|+||...+.|.-|+.|+|.|...
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPL   25 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CcceeecCCcccCCCcccccCCcc
Confidence            799999988999999999999654

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0025  Score=45.86  Aligned_cols=23  Identities=35%  Similarity=0.870  Sum_probs=19.9

Q ss_pred             ccccccccccCCCCCCCCCCCCC
Q 013033           94 DCGYYLKTGTCKYGSTCKYHHPK  116 (451)
Q Consensus        94 ~C~~FlktG~Ck~G~~CrF~H~~  116 (451)
                      .|+||...+.|..|++|+|+|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            39999966689999999999964

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.043  Score=35.65  Aligned_cols=25  Identities=44%  Similarity=1.069  Sum_probs=23.0

Q ss_pred             CcCCccccccccCCCCCCCccCCCC
Q 013033          332 QAICSNYSMYGICKFGPTCRFDHPY  356 (451)
Q Consensus       332 t~~C~~y~~~G~CkfG~~C~F~H~~  356 (451)
                      +.+|..|..+|.|+.|..|-..|..
T Consensus        13 ~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          13 TSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             SCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             cchhhhhhhccccCCCCCCcccCcC
Confidence            7799999999999999999999863

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.071  Score=34.60  Aligned_cols=26  Identities=23%  Similarity=0.502  Sum_probs=23.3

Q ss_pred             cccccccccccccCCCCCCCCCCCCC
Q 013033           91 GQPDCGYYLKTGTCKYGSTCKYHHPK  116 (451)
Q Consensus        91 ~~p~C~~FlktG~Ck~G~~CrF~H~~  116 (451)
                      .+.+|..|...|.|..|.+|.-+|+.
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCcC
Confidence            45689999999999999999999974