Citrus Sinensis ID: 013038

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
cccccEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHccccHHHHHHHcccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccHHHHHHHHHHHcccEEEEEEEcccccccccHHHccccccHHHHcccccccHHccccccccEEEEEEccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccEEEEEEcccccccccccccccccHHHHHHHHHHHHccHHccEEEEccccccHHHHHHHccHHHHHHHHHccHccHHHHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHHcccccEEEEccccccccEccEcEccEcccHHHHHHHHHHHHcccEEEEEccccccHHHHHHccccccEEEEEEEEccccEEEEEccccEEEEEEEEccccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccEEccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccc
mrskdkisyfydgdvgsvyfgpnhpmkphrlcmtHHLVLSYdlhkkmeiyrphkaypvelaqfhsaDYVEFlhritpdtqHLFRQELtkynlgedcpvFENLFEFCQIYAGGTIDAARRLNNQLCDIAInwagglhhakkceasgfcyinDLVLGILELLKYHARVLYIDidvhhgdgveeAFYFTDRLLQTCRYNLTKYLILVtypdvkvmtvsfhkfgdlffpgtgdvkeigeregkfyainvplkdgiddtsFTRLFKTIISKVVETYAPGAIVLQCgadslagdrlgcfnlsidgHAECVRFVKKfnlpllvtggggytkenvARCWTVETGilldtelpneipeneyikyfapecslripnghienlnskSYLSTIKMQVLENLRsiqhapsvqmqevppdfyipefdedeqnpdermdqhtqdkqiqrddefyegdndndhmdvg
mrskdkisyfydgdvgSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAInvplkdgiddtsFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLvtggggytkenvARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQhtqdkqiqrddefyegdndndhmdvg
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
******ISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI***********************************************************
****DKI*YFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIP*G****LNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPD*********************************************
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDE***************IQRDDEFYEGDNDNDHMDVG
***KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQE*P***********************************************
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MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query451 2.2.26 [Sep-21-2011]
Q8H0W2426 Histone deacetylase 9 OS= yes no 0.940 0.995 0.834 0.0
P56517480 Histone deacetylase 1 OS= yes no 0.933 0.877 0.566 1e-151
Q4QQW4482 Histone deacetylase 1 OS= yes no 0.844 0.790 0.589 1e-148
O42227480 Probable histone deacetyl N/A no 0.933 0.877 0.548 1e-148
O09106482 Histone deacetylase 1 OS= yes no 0.844 0.790 0.589 1e-148
Q32PJ8482 Histone deacetylase 1 OS= yes no 0.844 0.790 0.589 1e-148
Q5RAG0482 Histone deacetylase 1 OS= yes no 0.844 0.790 0.586 1e-148
Q13547482 Histone deacetylase 1 OS= yes no 0.844 0.790 0.586 1e-148
Q55FN5495 Type-1 histone deacetylas yes no 0.931 0.848 0.557 1e-147
P56518 576 Histone deacetylase 1 OS= no no 0.933 0.730 0.567 1e-146
>sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1 Back     alignment and function desciption
 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/446 (83%), Positives = 403/446 (90%), Gaps = 22/446 (4%)

Query: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60
           MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHL+L+Y LH KME+YRPHKAYP+E+
Sbjct: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHS DYVEFL RI P+ Q+LF  E+ +YNLGEDCPVFE+LFEFCQ+YAGGTIDAARRL
Sbjct: 61  AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NN+LCDIAINWAGGLHHAKKC+ASGFCYINDLVLGILELLK+H RVLYIDIDVHHGDGVE
Sbjct: 121 NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE 180

Query: 181 EAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKF 240
           EAFYFTDR                      VMTVSFHKFGD FFPGTGDVKEIGEREGKF
Sbjct: 181 EAFYFTDR----------------------VMTVSFHKFGDKFFPGTGDVKEIGEREGKF 218

Query: 241 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGH 300
           YAINVPLKDGIDD+SF RLF+TIISKVVE Y PGAIVLQCGADSLA DRLGCFNLSIDGH
Sbjct: 219 YAINVPLKDGIDDSSFNRLFRTIISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGH 278

Query: 301 AECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPEC 360
           AECV+FVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPEN+YIKYFAP+ 
Sbjct: 279 AECVKFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDF 338

Query: 361 SLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPD 420
           SL+IP GHIENLN+KSY+S+IK+Q+LENLR IQHAPSVQMQEVPPDFYIP+FDEDEQNPD
Sbjct: 339 SLKIPGGHIENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPD 398

Query: 421 ERMDQHTQDKQIQRDDEFYEGDNDND 446
            R DQ ++DKQIQRDDE+++GDNDND
Sbjct: 399 VRADQRSRDKQIQRDDEYFDGDNDND 424
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1 Back     alignment and function description
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1 SV=1 Back     alignment and function description
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1 Back     alignment and function description
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1 Back     alignment and function description
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1 Back     alignment and function description
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
356539296429 PREDICTED: histone deacetylase 9-like [G 0.951 1.0 0.891 0.0
356542722429 PREDICTED: histone deacetylase 9-like [G 0.951 1.0 0.882 0.0
224061587429 histone deacetylase [Populus trichocarpa 0.946 0.995 0.888 0.0
255639849429 unknown [Glycine max] 0.951 1.0 0.880 0.0
225453264430 PREDICTED: histone deacetylase 9 [Vitis 0.929 0.974 0.893 0.0
359479384458 PREDICTED: histone deacetylase 9-like [V 0.929 0.914 0.893 0.0
147787408430 hypothetical protein VITISV_020659 [Viti 0.929 0.974 0.891 0.0
297734830430 unnamed protein product [Vitis vinifera] 0.929 0.974 0.893 0.0
357471905430 Histone deacetylase [Medicago truncatula 0.949 0.995 0.875 0.0
255576367429 histone deacetylase 1, 2 ,3, putative [R 0.949 0.997 0.873 0.0
>gi|356539296|ref|XP_003538135.1| PREDICTED: histone deacetylase 9-like [Glycine max] Back     alignment and taxonomy information
 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/451 (89%), Positives = 416/451 (92%), Gaps = 22/451 (4%)

Query: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60
           M SKDKI+YFYDGDVGSVYFG  HPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
Sbjct: 1   MPSKDKIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHSADYVEFL+RITPDTQHLF +ELTKYNLGEDCPVF+NLFEFCQIYAGGTIDAARRL
Sbjct: 61  AQFHSADYVEFLNRITPDTQHLFLKELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
Sbjct: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180

Query: 181 EAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKF 240
           EAFYFTDR                      VMTVSFHK+GDLFFPGTGD KEIGEREGKF
Sbjct: 181 EAFYFTDR----------------------VMTVSFHKYGDLFFPGTGDAKEIGEREGKF 218

Query: 241 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGH 300
           YAINVPLKDGIDD+SFTRLFKTIISKV+ETY PGAIVLQCGADSLAGDRLGCFNLSIDGH
Sbjct: 219 YAINVPLKDGIDDSSFTRLFKTIISKVLETYQPGAIVLQCGADSLAGDRLGCFNLSIDGH 278

Query: 301 AECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPEC 360
           AECV FVK+FNLPLLVTGGGGYTKENVARCWTVETG+LLDTELPNEIPEN+YIKYFAPE 
Sbjct: 279 AECVSFVKRFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENDYIKYFAPEF 338

Query: 361 SLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPD 420
           SL+IPNG IENLNSKSYLSTIKMQVLENLR IQHAPSVQMQEVPPDFYIPEFDEDEQNPD
Sbjct: 339 SLKIPNGQIENLNSKSYLSTIKMQVLENLRCIQHAPSVQMQEVPPDFYIPEFDEDEQNPD 398

Query: 421 ERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG 451
           ER+DQHTQDK IQRDDE+Y+GDNDND MDV 
Sbjct: 399 ERLDQHTQDKHIQRDDEYYDGDNDNDQMDVS 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356542722|ref|XP_003539814.1| PREDICTED: histone deacetylase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|224061587|ref|XP_002300554.1| histone deacetylase [Populus trichocarpa] gi|222847812|gb|EEE85359.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255639849|gb|ACU20217.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225453264|ref|XP_002266492.1| PREDICTED: histone deacetylase 9 [Vitis vinifera] gi|297734674|emb|CBI16725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479384|ref|XP_002270071.2| PREDICTED: histone deacetylase 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787408|emb|CAN77816.1| hypothetical protein VITISV_020659 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734830|emb|CBI17064.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357471905|ref|XP_003606237.1| Histone deacetylase [Medicago truncatula] gi|355507292|gb|AES88434.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255576367|ref|XP_002529076.1| histone deacetylase 1, 2 ,3, putative [Ricinus communis] gi|223531488|gb|EEF33320.1| histone deacetylase 1, 2 ,3, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
TAIR|locus:2098115426 HDA9 "histone deacetylase 9" [ 0.525 0.556 0.877 3.1e-212
UNIPROTKB|P56517480 HDAC1 "Histone deacetylase 1" 0.532 0.5 0.545 7.5e-148
UNIPROTKB|Q32PJ8482 HDAC1 "Histone deacetylase 1" 0.529 0.495 0.555 1.2e-147
MGI|MGI:108086482 Hdac1 "histone deacetylase 1" 0.529 0.495 0.555 1.2e-147
RGD|619975482 Hdac1l "histone deacetylase 1- 0.529 0.495 0.555 1.2e-147
UNIPROTKB|Q13547482 HDAC1 "Histone deacetylase 1" 0.529 0.495 0.551 1.1e-146
UNIPROTKB|E2R692487 HDAC1 "Uncharacterized protein 0.529 0.490 0.553 1.4e-146
UNIPROTKB|F6X8F5483 HDAC1 "Histone deacetylase" [C 0.529 0.494 0.553 1.4e-146
UNIPROTKB|J9NUI0489 HDAC1 "Histone deacetylase" [C 0.529 0.488 0.553 1.4e-146
DICTYBASE|DDB_G0268024495 hdaA "type-1 histone deacetyla 0.529 0.482 0.533 9.8e-146
TAIR|locus:2098115 HDA9 "histone deacetylase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1133 (403.9 bits), Expect = 3.1e-212, Sum P(2) = 3.1e-212
 Identities = 208/237 (87%), Positives = 226/237 (95%)

Query:   210 KVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVE 269
             +VMTVSFHKFGD FFPGTGDVKEIGEREGKFYAINVPLKDGIDD+SF RLF+TIISKVVE
Sbjct:   188 RVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRTIISKVVE 247

Query:   270 TYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVAR 329
              Y PGAIVLQCGADSLA DRLGCFNLSIDGHAECV+FVKKFNLPLLVTGGGGYTKENVAR
Sbjct:   248 IYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGYTKENVAR 307

Query:   330 CWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENL 389
             CWTVETGILLDTELPNEIPEN+YIKYFAP+ SL+IP GHIENLN+KSY+S+IK+Q+LENL
Sbjct:   308 CWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIKVQILENL 367

Query:   390 RSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDND 446
             R IQHAPSVQMQEVPPDFYIP+FDEDEQNPD R DQ ++DKQIQRDDE+++GDNDND
Sbjct:   368 RYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQRSRDKQIQRDDEYFDGDNDND 424
GO:0004407 "histone deacetylase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0016575 "histone deacetylation" evidence=IEA;ISS
UNIPROTKB|P56517 HDAC1 "Histone deacetylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PJ8 HDAC1 "Histone deacetylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:108086 Hdac1 "histone deacetylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619975 Hdac1l "histone deacetylase 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q13547 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R692 HDAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X8F5 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUI0 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268024 hdaA "type-1 histone deacetylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94517HDAC1_DROME3, ., 5, ., 1, ., 9, 80.54600.93340.8080yesno
Q8H0W2HDA9_ARATH3, ., 5, ., 1, ., 9, 80.83400.94010.9953yesno
O42227HDA1B_XENLA3, ., 5, ., 1, ., 9, 80.54830.93340.8770N/Ano
Q6IRL9HDAC3_XENLA3, ., 5, ., 1, ., 9, 80.54870.92230.9719N/Ano
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.52450.93340.9132yesno
O59702CLR6_SCHPO3, ., 5, ., 1, ., 9, 80.52950.88690.9876yesno
Q91695HDA1A_XENLA3, ., 5, ., 1, ., 9, 80.55050.93340.8770N/Ano
Q4QQW4HDAC1_RAT3, ., 5, ., 1, ., 9, 80.58910.84470.7904yesno
Q13547HDAC1_HUMAN3, ., 5, ., 1, ., 9, 80.58660.84470.7904yesno
O09106HDAC1_MOUSE3, ., 5, ., 1, ., 9, 80.58910.84470.7904yesno
Q5RAG0HDAC1_PONAB3, ., 5, ., 1, ., 9, 80.58660.84470.7904yesno
Q4SFA0HDAC3_TETNG3, ., 5, ., 1, ., 9, 80.55070.92680.9766N/Ano
Q32PJ8HDAC1_BOVIN3, ., 5, ., 1, ., 9, 80.58910.84470.7904yesno
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.50790.91570.9538yesno
P56517HDAC1_CHICK3, ., 5, ., 1, ., 9, 80.56620.93340.8770yesno
Q55FN5HDA11_DICDI3, ., 5, ., 1, ., 9, 80.55750.93120.8484yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.994
3rd Layer3.5.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HDA904
histone deacetylase (429 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 0.0
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 0.0
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 0.0
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 0.0
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-177
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 1e-171
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-166
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-134
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 1e-104
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 1e-104
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-101
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 1e-89
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 3e-89
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 1e-79
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 2e-41
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 1e-37
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 8e-35
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 1e-26
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 1e-24
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 4e-23
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 1e-21
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2e-19
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 3e-19
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 1e-18
cd10006409 cd10006, HDAC4, Histone deacetylase 4 2e-18
cd10007420 cd10007, HDAC5, Histone deacetylase 5 5e-17
cd10009379 cd10009, HDAC9, Histone deacetylase 9 6e-17
cd10008378 cd10008, HDAC7, Histone deacetylase 7 3e-16
cd11683337 cd11683, HDAC10, Histone deacetylase 10 1e-12
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 2e-12
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 1e-05
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information 
 Score =  624 bits (1612), Expect = 0.0
 Identities = 239/403 (59%), Positives = 305/403 (75%), Gaps = 25/403 (6%)

Query: 6   KISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHS 65
           +++YFYD DVG+ ++GP HPMKPHRL +TH LVL Y L+KKM++Y+P++A   ++ +FHS
Sbjct: 2   RVAYFYDPDVGNFHYGPGHPMKPHRLALTHSLVLHYGLYKKMQVYKPYRASAHDMCRFHS 61

Query: 66  ADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLC 125
            DY++FL R+TP     F + L ++N+G+DCPVF  LF+FC +Y G +++ A +LN+++C
Sbjct: 62  EDYIDFLQRVTPQNIQGFTKSLNQFNVGDDCPVFPGLFDFCSMYTGASLEGATKLNHKIC 121

Query: 126 DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYF 185
           DIAINW+GGLHHAKK EASGFCY+ND+V+ ILELLKYH RVLYIDID+HHGDGV+EAFY 
Sbjct: 122 DIAINWSGGLHHAKKFEASGFCYVNDIVIAILELLKYHPRVLYIDIDIHHGDGVQEAFYL 181

Query: 186 TDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINV 245
           TDR                      VMTVSFHK+G+ FFPGTGD+ E+G   G++Y++NV
Sbjct: 182 TDR----------------------VMTVSFHKYGNYFFPGTGDMYEVGAESGRYYSVNV 219

Query: 246 PLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVR 305
           PLKDGIDD S+ +LFK +I +V++ Y P  IVLQCGADSL  DRLGCFNLSI GH ECV 
Sbjct: 220 PLKDGIDDQSYLQLFKPVIQQVIDFYQPTCIVLQCGADSLGCDRLGCFNLSIKGHGECVE 279

Query: 306 FVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIP 365
           FVK FN+PLLV GGGGYT  NVARCWT ET +L+D E+ NE+P NEY +YFAP+ +L  P
Sbjct: 280 FVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDEEISNELPYNEYFEYFAPDFTLH-P 338

Query: 366 N--GHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPD 406
           +    IEN NSK YL  I+  V ENL+ + HAPSVQMQ+VPPD
Sbjct: 339 DVSTRIENQNSKQYLDQIRQTVFENLKMLNHAPSVQMQDVPPD 381

HDAC3 is a Zn-dependent class I histone deacetylase that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. In order to target specific chromatin regions, HDAC3 can interact with DNA-binding proteins (transcriptional factors) either directly or after forming complexes with a number of other proteins, as observed for the SMPT/N-CoR complex which recruits human HDAC3 to specific chromatin loci and activates deacetylation. Human HDAC3 is also involved in deacetylation of non-histone substrates such as RelA, SPY and p53 factors. This protein can also down-regulate p53 function and subsequently modulate cell growth and apoptosis. This gene is therefore regarded as a potential tumor suppressor gene. HDAC3 plays a role in various physiological processes, including subcellular protein localization, cell cycle progression, cell differentiation, apoptosis and survival. HDAC3 has been found to be overexpressed in some tumors including leukemia, lung carcinoma, colon cancer and maxillary carcinoma. Thus, inhibitors precisely targeting HDAC3 (in some cases together with retinoic acid or hyperthermia) could be a therapeutic drug option. Length = 381
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 451
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-141  Score=1057.29  Aligned_cols=422  Identities=64%  Similarity=1.170  Sum_probs=408.3

Q ss_pred             CCCCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCchh
Q 013038            2 RSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQH   81 (451)
Q Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~~   81 (451)
                      .+|+||+|+|++++++|+||++|||+|+|++|+|+||.+|||.++|++++|..|+.+||++|||++||++|++++|+++.
T Consensus         4 ~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~   83 (425)
T KOG1342|consen    4 LIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENME   83 (425)
T ss_pred             cCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHhhhhccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHH
Q 013038           82 LFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK  161 (451)
Q Consensus        82 ~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ai~~~GG~HHA~~~~asGFC~vNdvaiai~~ll~  161 (451)
                      ....++.+||+++|||+|+|+|+||++++||||.||++|++++++|||||+||+|||||++||||||+|||||||++|+|
T Consensus        84 ~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK  163 (425)
T KOG1342|consen   84 TFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLK  163 (425)
T ss_pred             ccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccCCCCCCCCCCCCccCCCCCcce
Q 013038          162 YHARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFY  241 (451)
Q Consensus       162 ~~~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~~~ffPgtG~~~~~G~g~G~~~  241 (451)
                      +++||||||||+|||||||+|||.++|                      |||+|||+|++.||||||++.|+|.++|++|
T Consensus       164 ~h~RVLYIDIDvHHGDGVEeAFy~TDR----------------------VmTvSfHKyg~~fFPGTG~l~d~G~~kGkyy  221 (425)
T KOG1342|consen  164 YHKRVLYIDIDVHHGDGVEEAFYTTDR----------------------VMTVSFHKYGPGFFPGTGDLSDIGAGKGKYY  221 (425)
T ss_pred             hCCceEEEEecccCCccHHHHHhccce----------------------eEEEEEEeccCCCCCCCCcceeccCCCCceE
Confidence            999999999999999999999999999                      9999999999889999999999999999999


Q ss_pred             EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCC
Q 013038          242 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGG  321 (451)
Q Consensus       242 ~vNvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGG  321 (451)
                      +|||||++|++|++|..+|++||.++++.|+|++||+|||+|++.|||||+||||++||++|+++++++++|+++|||||
T Consensus       222 avNVPL~dGidD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGG  301 (425)
T KOG1342|consen  222 AVNVPLKDGIDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGG  301 (425)
T ss_pred             EEccchhccCCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHhhhhcCCCCCCCCCchhhhhhcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCcccc
Q 013038          322 YTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQ  401 (451)
Q Consensus       322 Y~~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~~~~~~~~~~~~~~~~~~v~~~  401 (451)
                      ||++||||||||+|++++|+++|++||+|+||+||+|||+|++.+++++|+|+++||++|++++.+|||++++|||||||
T Consensus       302 YT~rNVARcWtYeT~v~~~~~~~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~  381 (425)
T KOG1342|consen  302 YTLRNVARCWTYETGVLLDQELPNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQ  381 (425)
T ss_pred             cchhhhHHHHHHHhhhhcCccccccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCcccCCCcccccccccccccCCCCCCCCCCCCCC
Q 013038          402 EVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDN  445 (451)
Q Consensus       402 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (451)
                      .+|+.-......+++++++.|.++...|++++..+||+|+++++
T Consensus       382 ~~p~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~d~~~~~  425 (425)
T KOG1342|consen  382 MIPNPDFDEDMVEDEKDPDLRSSQESEDKDVQDDNEFYDGENEG  425 (425)
T ss_pred             ccCCCccchhhhhhhhCcccccchhhhhcccccchhhcccccCC
Confidence            99973222222356788899999999999999999999998763

>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-137
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 1e-135
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 2e-82
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 2e-82
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 2e-82
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 3e-82
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 5e-82
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 6e-82
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 7e-82
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 7e-82
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 1e-81
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 2e-81
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 3e-81
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 3e-81
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 7e-37
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 5e-36
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 5e-18
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 6e-18
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 6e-18
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 7e-18
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 4e-15
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 8e-15
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 5e-13
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 5e-13
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 3e-07
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 2e-06
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  485 bits (1248), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 225/394 (57%), Positives = 289/394 (73%), Gaps = 23/394 (5%)
Query: 7   ISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSA 66
           ++YFYD DVG+ ++G  HPMKPHRL +TH LVL Y L+KKM +++P++A   ++ +FHS 
Sbjct: 5   VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 67  DYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCD 126
           DY++FL R++P     F + L  +N+G+DCPVF  LFEFC  Y G ++  A +LNN++CD
Sbjct: 65  DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 127 IAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFT 186
           IAINWAGGLHHAKK EASGFCY+ND+V+GILELLKYH RVLYIDID+HHGDGV+EAFY T
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLT 184
Query: 187 DRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVP 246
           DR                      VMTVSFHK+G+ FFPGTGD+ E+G   G++Y +NVP
Sbjct: 185 DR----------------------VMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVP 222
Query: 247 LKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRF 306
           L+DGIDD S+  LF+ +I++VV+ Y P  IVLQCGADSL  DRLGCFNLSI GH ECV +
Sbjct: 223 LRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEY 282
Query: 307 VKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIP- 365
           VK FN+PLLV GGGGYT  NVARCWT ET +L++  +  E+P +EY +YFAP+ +L    
Sbjct: 283 VKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDV 342
Query: 366 NGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ 399
           +  IEN NS+ YL  I+  + ENL+ + HAPSVQ
Sbjct: 343 STRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 0.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 0.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 0.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 0.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 9e-43
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 2e-41
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 3e-38
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 6e-36
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
 Score =  583 bits (1505), Expect = 0.0
 Identities = 148/394 (37%), Positives = 226/394 (57%), Gaps = 25/394 (6%)

Query: 8   SYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSAD 67
            Y Y  +  S     +    P R  M H L+ +Y LHK+M I +P  A   E+A FH+  
Sbjct: 17  VYIYSPEYVS--MCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDA 74

Query: 68  YVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDI 127
           Y++ L +++ +        + +Y LG  CP  E +F++     G TI AA+ L + +C +
Sbjct: 75  YLQHLQKVSQEGDDDHPDSI-EYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKV 133

Query: 128 AINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTD 187
           AINW+GG HHAKK EASGFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT 
Sbjct: 134 AINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTS 193

Query: 188 RLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPL 247
           +                      VMTVS HKF   FFPGTGDV ++G  +G++Y++NVP+
Sbjct: 194 K----------------------VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPI 231

Query: 248 KDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFV 307
           +DGI D  + ++ ++++ +V + + P A+VLQ GAD++AGD +  FN++  G  +C++++
Sbjct: 232 QDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYI 291

Query: 308 KKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNG 367
            ++ L  L+ GGGGY   N ARCWT  TG++L   L +EIP++E+   + P+  L I   
Sbjct: 292 LQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPS 351

Query: 368 HIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQ 401
              + N    +  I   +  NL+ +         
Sbjct: 352 CRPDRNEPHRIQQILNYIKGNLKHVVIEGRSHHH 385
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.8e-114  Score=883.02  Aligned_cols=374  Identities=60%  Similarity=1.151  Sum_probs=358.6

Q ss_pred             CCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhh
Q 013038            4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF   83 (451)
Q Consensus         4 ~~~v~~~~~~~~~~~~~~~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~~~~   83 (451)
                      |+||+|+|||++++|.+|++|||+|.|+++++++|+++||++.+++++|++||.++|++||+++||++|++.++......
T Consensus         2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~   81 (376)
T 4a69_A            2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF   81 (376)
T ss_dssp             CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred             CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999887665544


Q ss_pred             HhhhhccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC
Q 013038           84 RQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH  163 (451)
Q Consensus        84 ~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ai~~~GG~HHA~~~~asGFC~vNdvaiai~~ll~~~  163 (451)
                      .+...+|+++.|||+|+++|++|++++||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++++
T Consensus        82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~  161 (376)
T 4a69_A           82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH  161 (376)
T ss_dssp             HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred             hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence            55566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccCCCCCCCCCCCCccCCCCCcceEE
Q 013038          164 ARVLYIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAI  243 (451)
Q Consensus       164 ~RVl~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~~~ffPgtG~~~~~G~g~G~~~~v  243 (451)
                      +||||||||||||||||+|||++++                      |||+|||+++..||||||..+++|.++|++|++
T Consensus       162 ~RV~ivD~DvHHGnGtq~iF~~d~~----------------------Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~v  219 (376)
T 4a69_A          162 PRVLYIDIDIHHGDGVQEAFYLTDR----------------------VMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCL  219 (376)
T ss_dssp             SCEEEEECSSSCCHHHHHHTTTCSS----------------------EEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEE
T ss_pred             CcEEEEeccCCCCcchhhHhcCCCC----------------------EEEEecccCCCcCCCCCCCccccCCCCCCceeE
Confidence            9999999999999999999999999                      999999999888999999999999999999999


Q ss_pred             eecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 013038          244 NVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT  323 (451)
Q Consensus       244 NvPL~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY~  323 (451)
                      ||||++|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||+|+||.+||++|+++++++++|+++||||||+
T Consensus       220 NvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~  299 (376)
T 4a69_A          220 NVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYT  299 (376)
T ss_dssp             EEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCS
T ss_pred             eeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhhhhcCCCCCCCCCchhhhhhcCCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHhhhcCCCCCCcc
Q 013038          324 KENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIP-NGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ  399 (451)
Q Consensus       324 ~~~var~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~l~~~~~~~~~~~~~~~~~~~v~  399 (451)
                      +++++|||+++|++++|.++|++||+++|++||+|+|+|+++ +++|+|+|+++||++|+++|+||||+|++|||||
T Consensus       300 ~~~var~w~~~~a~l~g~~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~  376 (376)
T 4a69_A          300 VRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ  376 (376)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSBCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred             hhHHHHHHHHHHHHhcCCCccCCCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            999999999999999999999999999999999999999998 8999999999999999999999999999999998
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 451
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 4e-97
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 1e-75
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 1e-49
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  294 bits (753), Expect = 4e-97
 Identities = 144/384 (37%), Positives = 224/384 (58%), Gaps = 25/384 (6%)

Query: 9   YFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADY 68
           Y Y  +  S     +    P R  M H L+ +Y LHK+M I +P  A   E+A FH+  Y
Sbjct: 5   YIYSPEYVS--MCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62

Query: 69  VEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIA 128
           ++ L +++ +       +  +Y LG DCP  E +F++     G TI AA+ L + +C +A
Sbjct: 63  LQHLQKVSQEGDDDHP-DSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121

Query: 129 INWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDR 188
           INW+GG HHAKK EASGFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181

Query: 189 LLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLK 248
           ++                          HKF   FFPGTGDV ++G  +G++Y++NVP++
Sbjct: 182 VMTVS----------------------LHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQ 219

Query: 249 DGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVK 308
           DGI D  + ++ ++++ +V + + P A+VLQ GAD++AGD +  FN++  G  +C++++ 
Sbjct: 220 DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYIL 279

Query: 309 KFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGH 368
           ++ L  L+ GGGGY   N ARCWT  TG++L   L +EIP++E+   + P+  L I    
Sbjct: 280 QWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSC 339

Query: 369 IENLNSKSYLSTIKMQVLENLRSI 392
             + N    +  I   +  NL+ +
Sbjct: 340 RPDRNEPHRIQQILNYIKGNLKHV 363
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-103  Score=804.22  Aligned_cols=360  Identities=41%  Similarity=0.812  Sum_probs=345.1

Q ss_pred             EEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhhHhhh
Q 013038            8 SYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQEL   87 (451)
Q Consensus         8 ~~~~~~~~~~~~~~~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~eL~~~Hs~~Yi~~l~~~~~~~~~~~~~~~   87 (451)
                      .|||||++.++  +.+|||+|.|++++++||+++||++++++++|++||.++|++|||++||++|++.++...... .+.
T Consensus         4 vyiy~~~~~~~--~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~-~~~   80 (364)
T d1t64a_           4 VYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDH-PDS   80 (364)
T ss_dssp             EEECCHHHHHH--HTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCC-TTT
T ss_pred             eEEeCHHHhcc--CCCCCCCcHHHHHHHHHHHHcCCccCCEEeCCCCCCHHHHHHhCCHHHHHHHHHhhhcccccc-chh
Confidence            68999999875  689999999999999999999999999999999999999999999999999998764332221 123


Q ss_pred             hccccCCCCCCCcchHHHHHHHHhHHHHHHHHHHcCCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhCCcEE
Q 013038           88 TKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVL  167 (451)
Q Consensus        88 ~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ai~~~GG~HHA~~~~asGFC~vNdvaiai~~ll~~~~RVl  167 (451)
                      .+|+++.|||+|+++++++++++||++.|++.+.+|++++|+||+||+|||++++|+||||||||||||+++++.++||+
T Consensus        81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~  160 (364)
T d1t64a_          81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL  160 (364)
T ss_dssp             TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred             eeecCCCCCCCCchHHHHHHHHhhhHHHHHHHHHcCCcccccccCccccccccccccccccccHHHHHHHHHHhhhceEE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             EEEcccccCCCccccccccccchhhhcccccchhhhccCCCceEEEEeeeccCCCCCCCCCCCCccCCCCCcceEEeecC
Q 013038          168 YIDIDVHHGDGVEEAFYFTDRLLQTCRYNLTKYLILVTYPDVKVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPL  247 (451)
Q Consensus       168 ~IDiDvHHGDGtqe~F~~~~r~~~~~~~~~~~~~~~~~~~~~~VltiSiH~~~~~ffPgtG~~~~~G~g~G~~~~vNvPL  247 (451)
                      |||||||||||||+||+++++                      |+|+|||+++.+||||||..+++|.+.|++|++||||
T Consensus       161 iiD~DvHhGnGtq~iF~~d~~----------------------V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL  218 (364)
T d1t64a_         161 YVDLDLHHGDGVEDAFSFTSK----------------------VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPI  218 (364)
T ss_dssp             EEECSSSCCHHHHHHHTTCSS----------------------EEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEE
T ss_pred             EEecccCCCCceeeeeecCCc----------------------ccccccccccCCCCCCCCChhccCCcccccceeeeec
Confidence            999999999999999999999                      9999999999889999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEcCCCCCcchh
Q 013038          248 KDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV  327 (451)
Q Consensus       248 ~~g~~D~~y~~~f~~ii~~~~~~f~Pd~Ivvq~G~D~~~gDplG~~nLs~~g~~~~~~~l~~~~~p~l~lggGGY~~~~v  327 (451)
                      ++|++|++|+.+|+++|.+++++|+||+||+|||||+|.+||||+||||++||++|+++++++++|+++||||||+++++
T Consensus       219 ~~g~~d~~y~~~~~~~i~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~  298 (364)
T d1t64a_         219 QDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANT  298 (364)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHH
T ss_pred             ccccChHHHHHHHHHhhHHHhhcCCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhhhcCCCCCCCCCchhhhhhcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhcC
Q 013038          328 ARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI  392 (451)
Q Consensus       328 ar~w~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~~~~~~~~~~~~~  392 (451)
                      +|||+++|++|+|+++|++||+|+||++|+|+|+|++.+++++|+|+.+||++|++.|.+|||.+
T Consensus       299 ar~w~~~~~~l~g~~~~~~~P~~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~  363 (364)
T d1t64a_         299 ARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV  363 (364)
T ss_dssp             HHHHHHHHHHHHTCCCCSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCCCccCCCchhhhhcCCCcccccCcccccccCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999976
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure