Citrus Sinensis ID: 013039

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
ccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHcHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccHHHHHHHHHcccccccEEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccEEccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHEEcEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
ccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHEEEHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHcHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mgtqgpattdqnynhaTSEEQAAKQKAiddwlpitssrnaKWWYSAFHNVTAMVGAGVLSLPYAmaqlgwgpGVAILILSWIITLYTLWQMVEMhemvpgkrfdryhELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCkepckeikLSYFIMIFASVHFVLshlpnfnaiAGVSLAAAVMSLSYSTIAWSasvrkgvqpdvaygykaktaagTVFNFFSALGDVAFAYAGHNVVLEIQatipstpekpskgpmwrGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIllslekptwlIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKklnfsptrLLRFVVRNLYVASTMFIgitfpffggllgffggfafapttyflPCIIWLAiykprkyslsWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
mgtqgpattdqnynhATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIpstpekpskgpMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMfigitfpffggllgffggfafaptTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
***************************IDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI**********PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKF**
****************************************KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTP**PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
*************************KAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
****************************DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
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MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILSPIGGLRQIILQAKDYKFYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query451 2.2.26 [Sep-21-2011]
Q9FKS8446 Lysine histidine transpor yes no 0.968 0.979 0.842 0.0
Q9C733453 Lysine histidine transpor no no 0.982 0.977 0.764 0.0
Q9LRB5441 Lysine histidine transpor no no 0.973 0.995 0.759 0.0
Q9SR44441 Lysine histidine transpor no no 0.975 0.997 0.757 0.0
O22719451 Lysine histidine transpor no no 0.971 0.971 0.647 1e-175
Q9SS86455 Lysine histidine transpor no no 0.940 0.931 0.654 1e-169
Q9C6M2440 Lysine histidine transpor no no 0.953 0.977 0.600 1e-146
Q9C9J0448 Lysine histidine transpor no no 0.980 0.986 0.574 1e-136
Q9SX98519 Lysine histidine transpor no no 0.944 0.820 0.370 2e-77
Q84WE9478 Lysine histidine transpor no no 0.937 0.884 0.304 2e-58
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/439 (84%), Positives = 404/439 (92%), Gaps = 2/439 (0%)

Query: 14  NHATSEE-QAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP 72
           +H   E+  AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGP
Sbjct: 9   DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query: 73  GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132
           G+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+
Sbjct: 69  GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query: 133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192
           GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLA
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLA 187

Query: 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 252
           AAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLE
Sbjct: 188 AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLE 247

Query: 253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW 312
           IQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP W
Sbjct: 248 IQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAW 307

Query: 313 LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIG 372
           LI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF+G
Sbjct: 308 LIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVG 367

Query: 373 ITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILS 432
           +TFPFFGGLL FFGGFAFAPTTYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+LS
Sbjct: 368 MTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLS 427

Query: 433 PIGGLRQIILQAKDYKFYS 451
           PIGGLR I++QAK YKFYS
Sbjct: 428 PIGGLRTIVIQAKGYKFYS 446
Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
356574036450 PREDICTED: lysine histidine transporter 0.997 1.0 0.818 0.0
297805586445 hypothetical protein ARALYDRAFT_916150 [ 0.968 0.982 0.844 0.0
30693666445 Lysine histidine transporter 1 [Arabidop 0.968 0.982 0.842 0.0
30693663446 Lysine histidine transporter 1 [Arabidop 0.968 0.979 0.842 0.0
356558767465 PREDICTED: lysine histidine transporter 1.0 0.969 0.789 0.0
225452181442 PREDICTED: lysine histidine transporter 0.980 1.0 0.824 0.0
356558769450 PREDICTED: lysine histidine transporter 0.997 1.0 0.835 0.0
255537003440 amino acid transporter, putative [Ricinu 0.966 0.990 0.862 0.0
356571417451 PREDICTED: lysine histidine transporter 0.988 0.988 0.804 0.0
357454949487 Lysine/histidine transporter [Medicago t 1.0 0.926 0.763 0.0
>gi|356574036|ref|XP_003555159.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/451 (81%), Positives = 409/451 (90%), Gaps = 1/451 (0%)

Query: 1   MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLS 60
           MGTQ     D NY    +EE+  +QKAI+DWLPITSSRN KWWYSA HNVT+MVGAGVLS
Sbjct: 1   MGTQSQTPVDNNYLKIATEEELLRQKAINDWLPITSSRNGKWWYSAVHNVTSMVGAGVLS 60

Query: 61  LPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120
           LPYAM++LGWGPGV +L+LSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ+AFGEKLGL
Sbjct: 61  LPYAMSELGWGPGVTVLVLSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQYAFGEKLGL 120

Query: 121 YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180
           YIVVPQQL+VE+GV IVYMVTGGKSL K H+ +C + CK+IKL++FIMIFASVHFVLSHL
Sbjct: 121 YIVVPQQLVVEIGVNIVYMVTGGKSLQKFHDTVC-DSCKKIKLTFFIMIFASVHFVLSHL 179

Query: 181 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDV 240
           P+FN+I+G+SLAAAVMSLSYSTIAW+AS  KGVQ +V YGYKAK+ +GTVFNFFSALGDV
Sbjct: 180 PSFNSISGLSLAAAVMSLSYSTIAWAASAHKGVQENVQYGYKAKSTSGTVFNFFSALGDV 239

Query: 241 AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE 300
           AFAYAGHNVV+EIQATIPSTPEKPSKGPMWRGVVVAYIVV LCYFPVALIGYWMFGN VE
Sbjct: 240 AFAYAGHNVVMEIQATIPSTPEKPSKGPMWRGVVVAYIVVGLCYFPVALIGYWMFGNSVE 299

Query: 301 DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVV 360
           DNIL+SLEKP WLI MAN FVV+HVIGSYQIYAMPVFDMIET++VKKLNF P+  LRF+V
Sbjct: 300 DNILISLEKPKWLIAMANMFVVIHVIGSYQIYAMPVFDMIETVMVKKLNFKPSSTLRFIV 359

Query: 361 RNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRKYSLSWCINWI 420
           RN+YVA TMF+GITFPFF GLLGFFGGFAFAPTTYFLPCI+WLAIYKPR++SLSW  NWI
Sbjct: 360 RNVYVAFTMFVGITFPFFSGLLGFFGGFAFAPTTYFLPCIMWLAIYKPRRFSLSWWANWI 419

Query: 421 CIVLGLCLMILSPIGGLRQIILQAKDYKFYS 451
           CIV G+ LMILSPIGGLR II+ AKDYKFYS
Sbjct: 420 CIVFGILLMILSPIGGLRSIIISAKDYKFYS 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297805586|ref|XP_002870677.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] gi|297316513|gb|EFH46936.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30693666|ref|NP_198894.2| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|332007211|gb|AED94594.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30693663|ref|NP_851109.1| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|75262627|sp|Q9FKS8.1|LHT1_ARATH RecName: Full=Lysine histidine transporter 1 gi|14194151|gb|AAK56270.1|AF367281_1 AT5g40780/K1B16_3 [Arabidopsis thaliana] gi|10177957|dbj|BAB11340.1| amino acid permease [Arabidopsis thaliana] gi|22137070|gb|AAM91380.1| At5g40780/K1B16_3 [Arabidopsis thaliana] gi|332007210|gb|AED94593.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356558767|ref|XP_003547674.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225452181|ref|XP_002265308.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|296090261|emb|CBI40080.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558769|ref|XP_003547675.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255537003|ref|XP_002509568.1| amino acid transporter, putative [Ricinus communis] gi|223549467|gb|EEF50955.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356571417|ref|XP_003553873.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357454949|ref|XP_003597755.1| Lysine/histidine transporter [Medicago truncatula] gi|355486803|gb|AES68006.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.968 0.979 0.794 1.1e-192
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.955 0.977 0.766 1.3e-180
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.982 0.977 0.717 4e-177
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.973 0.995 0.715 1.1e-174
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.960 0.981 0.723 3.7e-174
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.960 0.960 0.620 1.2e-152
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.960 0.984 0.552 2.7e-132
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.980 0.986 0.545 1.4e-128
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.933 0.811 0.354 2.5e-72
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.931 0.878 0.289 4.8e-55
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1867 (662.3 bits), Expect = 1.1e-192, P = 1.1e-192
 Identities = 349/439 (79%), Positives = 381/439 (86%)

Query:    14 NHATSEE-QAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP 72
             +H   E+  AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGP
Sbjct:     9 DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query:    73 GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132
             G+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+
Sbjct:    69 GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query:   133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192
             GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLA
Sbjct:   129 GVCIVYMVTGGKSLKKFHELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLA 187

Query:   193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 252
             AAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLE
Sbjct:   188 AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLE 247

Query:   253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW 312
             IQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP W
Sbjct:   248 IQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAW 307

Query:   313 LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMXXX 372
             LI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TM   
Sbjct:   308 LIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVG 367

Query:   373 XXXXXXXXXXXXXXXXXXXXXTYFLPCIIWLAIYKPRKYSLSWCINWICIVLGLCLMILS 432
                                  TYFLPC+IWLAIYKP+KYSLSW  NW+CIV GL LM+LS
Sbjct:   368 MTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLS 427

Query:   433 PIGGLRQIILQAKDYKFYS 451
             PIGGLR I++QAK YKFYS
Sbjct:   428 PIGGLRTIVIQAKGYKFYS 446
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS;RCA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP
GO:0016020 "membrane" evidence=ISS
GO:0043090 "amino acid import" evidence=RCA;IMP
GO:0080167 "response to karrikin" evidence=IEP
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKS8LHT1_ARATHNo assigned EC number0.84280.96890.9798yesno
Q9LRB5LHT2_ARATHNo assigned EC number0.75900.97330.9954nono
Q9C733LHTL1_ARATHNo assigned EC number0.76450.98220.9779nono
Q9SR44LHTL2_ARATHNo assigned EC number0.75730.97560.9977nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_703892.1
annotation not avaliable (445 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-119
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 3e-16
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 8e-11
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 1e-04
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 2e-04
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  353 bits (907), Expect = e-119
 Identities = 151/413 (36%), Positives = 222/413 (53%), Gaps = 19/413 (4%)

Query: 38  RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM 97
                W + F+ + A++GAGVLSLPYA  QLGW PG+ +L++  +I+LYTL  +V+  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 98  VP---GKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC 154
           V    GKR   Y +LG   FG K G  +++   L+   GVCI Y++  G +L  + +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 155 KEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQ 214
                 I L YFI+IF  +   LS +PN +A++ +SL AAV SL Y  I   +    GV 
Sbjct: 120 DT--CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVL 176

Query: 215 PDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274
                G         +   F A+G + FA+ GH V+L IQ T+ S P K     M + ++
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSK--FKAMTKVLL 233

Query: 275 VAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAM 334
            A I+V + Y  V L+GY  FGN V+ NILL+L K  WLI +AN  +V+H++ SY + A 
Sbjct: 234 TAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAF 293

Query: 335 PVFDMIETLLVKK----LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAF 390
           P+  ++E LL +K     +   ++LLR V+R+  V  T  I I+ PF G  L   G  + 
Sbjct: 294 PIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSG 353

Query: 391 APTTYFLPCIIWLAIYKPRKYSLSW-----CINWICIVLGLCLMILSPIGGLR 438
           AP T+ LP +  L + K +K SL        ++ ICIV+GL LM     G + 
Sbjct: 354 APLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 451
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK10483414 tryptophan permease; Provisional 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.93
TIGR00814397 stp serine transporter. The HAAAP family includes 99.91
PRK10655438 potE putrescine transporter; Provisional 99.84
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.82
PRK10644445 arginine:agmatin antiporter; Provisional 99.82
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.8
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.8
PRK15049499 L-asparagine permease; Provisional 99.8
PRK10249458 phenylalanine transporter; Provisional 99.79
PRK11387471 S-methylmethionine transporter; Provisional 99.79
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.79
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.79
TIGR00909429 2A0306 amino acid transporter. 99.79
PRK11021410 putative transporter; Provisional 99.78
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.78
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.77
PRK10746461 putative transport protein YifK; Provisional 99.77
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.77
TIGR00911501 2A0308 L-type amino acid transporter. 99.76
PRK10238456 aromatic amino acid transporter; Provisional 99.76
PRK10836489 lysine transporter; Provisional 99.76
TIGR00930 953 2a30 K-Cl cotransporter. 99.75
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.74
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.74
PRK10580457 proY putative proline-specific permease; Provision 99.74
TIGR00913478 2A0310 amino acid permease (yeast). 99.72
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.69
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.69
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.67
COG0531466 PotE Amino acid transporters [Amino acid transport 99.66
COG0833541 LysP Amino acid transporters [Amino acid transport 99.65
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.56
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.54
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.53
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.5
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.48
PRK15238496 inner membrane transporter YjeM; Provisional 99.47
PF03845320 Spore_permease: Spore germination protein; InterPr 99.42
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.32
KOG1289550 consensus Amino acid transporters [Amino acid tran 99.2
KOG3832319 consensus Predicted amino acid transporter [Genera 99.08
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.95
COG3949349 Uncharacterized membrane protein [Function unknown 98.87
PRK11375484 allantoin permease; Provisional 98.7
COG1457442 CodB Purine-cytosine permease and related proteins 98.61
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.52
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.5
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.38
TIGR00813407 sss transporter, SSS family. have different number 98.36
KOG1288 945 consensus Amino acid transporters [Amino acid tran 98.35
PRK12488549 acetate permease; Provisional 98.3
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.23
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.17
PRK11017404 codB cytosine permease; Provisional 98.16
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.16
PRK09395551 actP acetate permease; Provisional 98.15
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.11
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.07
PRK10484523 putative transporter; Provisional 98.04
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.01
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.99
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.92
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.87
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.82
PRK15419502 proline:sodium symporter PutP; Provisional 97.81
PRK00701439 manganese transport protein MntH; Reviewed 97.67
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.59
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.57
PRK15015 701 carbon starvation protein A; Provisional 97.25
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.21
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 97.19
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.18
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.17
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.07
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.89
COG4147529 DhlC Predicted symporter [General function predict 96.27
PRK15433439 branched-chain amino acid transport system 2 carri 96.1
PHA02764399 hypothetical protein; Provisional 95.7
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.78
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.47
KOG2466572 consensus Uridine permease/thiamine transporter/al 94.16
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 93.34
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 93.08
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.83
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 91.02
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 90.99
PRK15433439 branched-chain amino acid transport system 2 carri 87.28
COG1292537 BetT Choline-glycine betaine transporter [Cell env 83.84
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 82.19
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-55  Score=417.40  Aligned_cols=389  Identities=21%  Similarity=0.314  Sum_probs=344.9

Q ss_pred             cCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCCccCCHHHHHHHH
Q 013039           37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM---VPGKRFDRYHELGQHA  113 (451)
Q Consensus        37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~---~~~~~~~sy~~~~~~~  113 (451)
                      ++..|..++..|+.+.++|+|+|++|+||+++|++.|.+..++++.++.|+++.+++|.+.   +.+....+|.+.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            5568999999999999999999999999999999999999999999999999999998652   2222245777777666


Q ss_pred             h----------cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCc
Q 013039          114 F----------GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF  183 (451)
Q Consensus       114 ~----------G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l  183 (451)
                      +          |+ ++|.+++.++.+.++|.|++|++++++++.++.+...   ...++.+.++.+..+..+|++++|++
T Consensus       124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~---~~~~s~~~~i~~~~~~~lll~~Ir~L  199 (449)
T KOG1304|consen  124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS---PGVLSVRLYILIQLPPLLLLNLIRNL  199 (449)
T ss_pred             HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC---CCCccHHHHHHHHHHHHHHHHHHHhh
Confidence            4          54 5679999999999999999999999999999998332   23567889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCC
Q 013039          184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK  263 (451)
Q Consensus       184 ~~l~~~s~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~  263 (451)
                      |.++.+|.++.++.+..+.++.++.+....      ..+..+...++.+++..+|+.+|||.|+.++.|+.++|    |+
T Consensus       200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~  269 (449)
T KOG1304|consen  200 KILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KK  269 (449)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cC
Confidence            999999999999888777777666555432      22223345668999999999999999999999999999    89


Q ss_pred             CCCCCCc-hHHHHHHHHHHHHHHHHHhhhhhhccCcchhHHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Q 013039          264 PSKGPMW-RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET  342 (451)
Q Consensus       264 p~~~~~~-~~~~~~~~~~~~~Y~~~~~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~  342 (451)
                      |++++-+ +++..+|.+++++|+.+|++||+.|||++++.+++|+|+ +++...+++++++.++.+||++++|..+.+++
T Consensus       270 P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~  348 (449)
T KOG1304|consen  270 PQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP  348 (449)
T ss_pred             hhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence            9875322 777899999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HhhhccCCCchhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCC---cchhHHHHH
Q 013039          343 LLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK---YSLSWCINW  419 (451)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~v~~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~---~~~~~~~~~  419 (451)
                      .+++|.++++.++..+.+|..+++++.++|..+|+++.+++++|+++++.+.+++|++++++.++.+.   .+|+++.+.
T Consensus       349 ~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni  428 (449)
T KOG1304|consen  349 GIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNI  428 (449)
T ss_pred             hHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHH
Confidence            99888776667899999999999999999999999999999999999999999999999999987654   357889999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHH
Q 013039          420 ICIVLGLCLMILSPIGGLRQI  440 (451)
Q Consensus       420 ~~~~~g~~~~v~g~~~si~~l  440 (451)
                      .++++|++.++.|+|.++.++
T Consensus       429 ~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  429 VLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHHHHHhhhhhcC
Confidence            999999999999999999864

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.86
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.77
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.68
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.85
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.31
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.01
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 93.48
4ain_A539 Glycine betaine transporter BETP; membrane protein 88.19
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.86  E-value=6.5e-20  Score=183.52  Aligned_cols=357  Identities=15%  Similarity=0.096  Sum_probs=228.3

Q ss_pred             cccCCChHHHHHHHHHhhhhccccccHHHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccCCHHHHHHHHh
Q 013039           35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF  114 (451)
Q Consensus        35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~~l~~~~~~~~~~~~~sy~~~~~~~~  114 (451)
                      +++|+.+.++..+..+++++|+|++.+|....+.|.. +++..++.+++.......+.|...+.|..+  +..++.++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence            3568899999999999999999999999888888864 777788889999999999999999888866  8899999999


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcCCCCCcchhhHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 013039          115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA  194 (451)
Q Consensus       115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~  194 (451)
                      ||++| ++..+..++........+....++++..+++...    ..+....+.+++ ++..-....++.+...+++.+..
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~in~~g~~~~~~~~~~~~  155 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVV-LWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHH
Confidence            99888 8888888887777777777777777665443211    001111111122 22222233457788877777666


Q ss_pred             HHHHHHHHHHhhheeeeccCCCccccccccCcccchhhHHHHhhhHhhhcccceeecccccccccCCCCCCCCCCchHHH
Q 013039          195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV  274 (451)
Q Consensus       195 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~h~~~~~i~~~m~~~~~~p~~~~~~~~~~  274 (451)
                      ...+..++++++..+.....++....+.+. ...++.++..++...+|+|.|++.+....+|+    |||+|+ .+|++.
T Consensus       156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r~-ip~a~~  229 (445)
T 3l1l_A          156 VLALIPIVGIAVFGWFWFRGETYMAAWNVS-GLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKRN-VPIATI  229 (445)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhcccccCcc-CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCcccc-ccHHHH
Confidence            655544443333333222222221122111 11235688999999999999999999999999    899776 899999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCcch----h---HHhhCCCChhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHhhhc
Q 013039          275 VAYIVVALCYFPVALIGYWMFGNKVE----D---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK  347 (451)
Q Consensus       275 ~~~~~~~~~Y~~~~~~gy~~fg~~~~----~---~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~  347 (451)
                      .+...+.++|++.........+.+..    +   .+..... .++...+..+...++.+.+.....+...+.+....+++
T Consensus       230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg  308 (445)
T 3l1l_A          230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG  308 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999998877666653221    1   1111111 13455566677777777776666666666665554432


Q ss_pred             c--------CCCchhHHHHHHHHHHHHHHHHHHHhcc----chhhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCC
Q 013039          348 L--------NFSPTRLLRFVVRNLYVASTMFIGITFP----FFGGLLGFFGGFAFAPTTYFLPCIIWLAIYKPRK  410 (451)
Q Consensus       348 ~--------~~~~~~~~~~~~~~~~~~~~~~la~~v~----~~~~i~~~~G~~~~~~~~~i~P~l~~l~~~~~~~  410 (451)
                      .        + +++.+.+.......+.....+....|    .++.+.++.+  ....+.|.++.+.+++.+++++
T Consensus       309 ~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          309 LFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             SSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             CCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            1        2 22333333333322222222211122    3555555544  3456889999999998887654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 95.09
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.09  E-value=1.4  Score=41.44  Aligned_cols=109  Identities=17%  Similarity=0.126  Sum_probs=61.2

Q ss_pred             ChHHHHHHHHHhhhhccc-cccHHHHHHhhChhHHHHHHHHHHHHHHHHHH----HHHHhhhhcCCCccCCHHHHHHHHh
Q 013039           40 AKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLW----QMVEMHEMVPGKRFDRYHELGQHAF  114 (451)
Q Consensus        40 ~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~~gii~~i~~~~~~~~s~~----~l~~~~~~~~~~~~~sy~~~~~~~~  114 (451)
                      .+..+.++..++..+|-| +.-.||...+-|-..-.+..+++.++...-..    .+.+..++-   ....+..+.....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g---~i~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ---GHGTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---TCCSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---cccHHHHHHHHhc
Confidence            355788999999999998 66699987666543334443333333333222    222222221   1347777777665


Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 013039          115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL  152 (451)
Q Consensus       115 G~~~g~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~  152 (451)
                      +.+.. .-+........+..++-|....+..+......
T Consensus        82 ~~~~~-~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s  118 (509)
T d2a65a1          82 RNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKF  118 (509)
T ss_dssp             CSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcch-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53333 22344444555556666777766666555443