Citrus Sinensis ID: 013046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccEEEEEcccEEcccccccccccEEEcccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccccccHHHHHHcccccccccHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHccccccEEEEccccccccccccccccccccccEEccEEEEEEccccccccccccEEEEEEEccccccccccEEEEEEEEcccccccEEEcccccccccccHHHHHHcccHHHcccccccEEEEEEccccccccccccEEEEEEEEEccccccccEEEEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEccccccccccccccHHHHHHHcccccEEcccccccccccccccccccccccccccccEEEEEcEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccEEEEEEcccEEccccccccccEEEEcccccccccccccccccccEEEEEEEEccccEEEEEEEEccccccccccccccHHHcccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHcccccccccEEEEccccccEEEccccccHcccccccccccEEEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEEEEcccccEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccEEccccccccHHHHEEEEccccccccEEEEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEEEHcccccccccccccccHHHHHHcccccEEEEEEccccccccEcccccccccccccccEEEEEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFRevkfqdhedigvnrgictcgqqsgivltvgylpglkvdaipllrrkeivqvpvddtyvdvylappvpmidQFVMDIQNyttsvsgcaspvgiimfgkedmdqkpiIEKLDYAMSMNTVFvgdersrfayrsgddlrnvcgnpafISDAVALVFasdkdkphgtgeIQFHLAMSegvsaigprhkaVSVRAnhaegstwltakreghhvilDGEQILRHIDQLENRFPQVELYVGVTkrrkcsigsekSRLITTLAFhgirggdqeylyvdgvgiktgdyfqfyqpDHNAALAACRNASENirnlklnssgkgflgrrdvansidrkeVLGGFIFsccgrgnsffgglnvdsfpffenfpsaplagifcggeigrgklsmtgqesqeespaerrYLHVYSTAYLVISYSAAPSE
Flexible Loop (DISEMBL)
MRRTLDFLVKHlglrtpiilsvvHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLenrfpqvelyvgvtkrrkcsigseksrlITTLafhgirggdQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRnlklnssgkgflgrrDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Low Complexity Region (SEG)
MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Disordered region (IsUnstruct)
****LDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDK****GTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGR******************RYLHVYSTAYLVISY******
Disordered Region (DISOPRED)
****LDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERS************VCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILR********FPQVELYVGVTKR**********RLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSG***************KEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTG******SPAERRYLHVYSTAYLVI*YS*****
Disordered Region (DISEMBL)
MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKL*************ERRYLHVYSTAYLVISYSAAPSE
Disordered Region (DISPRO)
MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q9FMV0	529	F-box/LRR-repeat protein	yes	no	0.902	0.767	0.411	1e-84

>sp|Q9FMV0|FBL91_ARATH F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1

 Score =  313 bits (803), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/454 (41%), Positives = 258/454 (56%), Gaps = 48/454 (10%)

Query: 1   MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQ---DHEDIGVNRGICTCG 57
           M  TL  + + +G R PII+SVV G++G++A  D+  EV+     D E   V        
Sbjct: 116 MEETLTLITERVGSRVPIIVSVVTGILGKEACNDKAGEVRLHSTSDDELFDV-------- 167

Query: 58  QQSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYT 117
               I+LT+GYLPG+KVD IP+++ K                     M D+FVMDI+NY 
Sbjct: 168 ANFAILLTIGYLPGMKVDIIPVIQAKG---------------ESGAEMEDKFVMDIRNYM 212

Query: 118 TSVSG-CASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVC 176
           + VSG  A+P  +I+F ++    +P++ KLDYAM   TV VG +   F ++ G++ RNV 
Sbjct: 213 SMVSGHAAAPACLILFAEDTHATEPVLHKLDYAMPAETVIVGGQIGEFLHKRGNEPRNVQ 272

Query: 177 GNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--ST 234
                I     L+FA D+ +P     IQF  A+S G+S++  R+KA +V  +      ST
Sbjct: 273 LQKDDIRVLAGLIFARDRHRPAQAERIQFDTAISNGMSSVDLRYKAANVNVSLGPSCPST 332

Query: 235 WLTAKREGHHVILDGEQILRHIDQ-LENRFPQVELYVGVTKRRKCSIG-SEKSRLITTLA 292
            LTAKR G   +LDG+QIL  ID  LEN   + + Y+GV KRRK SIG  EK +++++L 
Sbjct: 333 LLTAKRRGEAEVLDGDQILDDIDNILENYIWENDSYLGVIKRRKYSIGLEEKPKIMSSLV 392

Query: 293 FHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLG 352
           FH + G D + L VDG GIKTGD FQ Y PD   A AA  + S  +RNLK          
Sbjct: 393 FHQVNGSDDQDLLVDGAGIKTGDQFQVYLPDLKVAEAALNDVSAQLRNLK---------- 442

Query: 353 RRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG 412
                +  ++ EV+GGF F    RG+SFFG  N DS PF ENFP  P  GIFC GEIGR 
Sbjct: 443 -----SKPNKPEVVGGFAFVGSCRGDSFFGCPNADSSPFLENFPELPFGGIFCDGEIGRS 497

Query: 413 KLSMTGQESQEESPAERRYLHVYSTAYLVISYSA 446
            +   G+E +E S   +R+LHVYS+ YL++SY++
Sbjct: 498 LILEEGEEKKEVSI--QRFLHVYSSVYLIVSYTS 529

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
224136205	533	f-box family protein [Populus trichocarp	0.944	0.797	0.54	1e-132
359491092	527	PREDICTED: F-box/LRR-repeat protein At5g	0.955	0.815	0.535	1e-130
147863571	527	hypothetical protein VITISV_019403 [Viti	0.955	0.815	0.533	1e-129
255540189	523	conserved hypothetical protein [Ricinus	0.904	0.778	0.532	1e-125
224122060	551	predicted protein [Populus trichocarpa]	0.942	0.769	0.515	1e-123
118488987	533	unknown [Populus trichocarpa x Populus d	0.933	0.787	0.516	1e-117
224118086	530	predicted protein [Populus trichocarpa]	0.933	0.792	0.519	1e-117
224115878	558	predicted protein [Populus trichocarpa]	0.928	0.749	0.486	1e-110
118484799	342	unknown [Populus trichocarpa]	0.751	0.988	0.577	1e-105
224115874	637	predicted protein [Populus trichocarpa]	0.853	0.602	0.504	1e-104

>gi|224136205|ref|XP_002322271.1| f-box family protein [Populus trichocarpa] gi|222869267|gb|EEF06398.1| f-box family protein [Populus trichocarpa]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/450 (54%), Positives = 318/450 (70%), Gaps = 25/450 (5%)

Query: 1   MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQS 60
           +   L+FL   LG +TPII+S   G+MGRDA+TDE REV  +++   G +         +
Sbjct: 104 LSERLNFLATKLGFQTPIIVSCTSGIMGRDAVTDEHREVMLEEYWVDGESNPC------N 157

Query: 61  GIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSV 120
           GI+LTVG+LPGLKVDAIPL + ++  +                 M+D FVMDI++Y TS+
Sbjct: 158 GIILTVGFLPGLKVDAIPLFQPRKGCRAT---------------MVDNFVMDIKDYATSI 202

Query: 121 SGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA 180
           SGCASPVGIIMFG ED DQKP++EKLD+AMS +T+ +GDER++F YR+G + RN   +  
Sbjct: 203 SGCASPVGIIMFGDEDADQKPVMEKLDHAMSSDTIIIGDERAQFLYRNGVESRNDYESSE 262

Query: 181 FISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVR--ANHAEGSTWLTA 238
           + S AVALVFA D+DKP GTGEIQFH A+S GVSA+GPR+KAVSV+   +    +TWLTA
Sbjct: 263 YFSAAVALVFARDRDKPCGTGEIQFHAALSSGVSAVGPRYKAVSVKKIVSGTGHTTWLTA 322

Query: 239 KREGHHVILDGEQILRHID-QLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIR 297
           +REG H I DG++IL  I+ +L N+    +LY+GVT++R+C IGS+KSR++T L FHG+ 
Sbjct: 323 RREGEHEIQDGQRILDDINNELVNQVGHPDLYIGVTEQRRCFIGSQKSRVMTFLVFHGVM 382

Query: 298 GGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA 357
           GGDQEYL+ DGVGI+TGDYFQFY PD +AAL++C N S+N RNL L+ S +  L  R V 
Sbjct: 383 GGDQEYLFADGVGIRTGDYFQFYHPDPSAALSSCSNVSKNFRNLNLDWSSRNCLHARGVY 442

Query: 358 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMT 417
           +++  KE++GGF+FSCCGRG SFF   NVDS PF +NFP  P+AGIFC GEIGRG     
Sbjct: 443 DNVCNKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGFPMAGIFCRGEIGRGFSVFN 502

Query: 418 GQESQEESPAERRYLHVYSTAYLVISYSAA 447
             E QEE  +    LHVYS  YL++SY+ A
Sbjct: 503 ADEGQEERTS-HCCLHVYSAVYLLVSYTPA 531

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491092|ref|XP_002283895.2| PREDICTED: F-box/LRR-repeat protein At5g63520-like [Vitis vinifera] gi|297734433|emb|CBI15680.3| unnamed protein product [Vitis vinifera]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/454 (53%), Positives = 306/454 (67%), Gaps = 24/454 (5%)

Query: 1   MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQ-DHEDIGVNRGICTCGQQ 59
           + RT   + K LG  TP+I SV  G++G DA+T+EF+EVK+  D ED  +        + 
Sbjct: 93  LERTHKLITKKLGSATPVITSVARGIIGSDAITEEFKEVKWGVDVEDFNL-----PANKD 147

Query: 60  SGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTS 119
            GIVL VG++PGLKVDAIPLLR  E                P + +ID+FVMDI+N++ +
Sbjct: 148 RGIVLIVGFMPGLKVDAIPLLRELE---------------EPGISLIDKFVMDIRNFSAA 192

Query: 120 VSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNP 179
           VSGC SP GI+MFG +  D KP++EK+DYAMSM TV +G+E   F YRSGDD RN+ G+ 
Sbjct: 193 VSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGHFMYRSGDDSRNISGSL 252

Query: 180 AFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVR--ANHAEGSTWLT 237
               D VALVFA D DKP G GE QFH+A+S GV  +GP HKA SV+   + +E STWLT
Sbjct: 253 KNSCDGVALVFARDNDKPQGVGETQFHVALSTGVVPVGPTHKAASVKVKGDGSERSTWLT 312

Query: 238 AKREGHHVILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGI 296
           A++EG    LDGE++L  I D++EN     +LY+GVTKRRKCSIGSEK R +TTL FH +
Sbjct: 313 ARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSIGSEKVRWVTTLEFHDV 372

Query: 297 RGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDV 356
            GGD+EYL+VDGVGIKTGD F+FY+ D + AL++CR+ SE  RNLK   + K     R V
Sbjct: 373 LGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRNLKQAWTHKNSYHFRGV 432

Query: 357 ANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSM 416
           A+  D+ EV GG IFSC GRG+SFFG  NVDS PF ENFP  PLAGI CGGEIGR  LS 
Sbjct: 433 ADGGDKTEVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPGFPLAGIMCGGEIGRVHLSS 492

Query: 417 TGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 450
              +  +E  + R YLH YST YLVIS++ +  E
Sbjct: 493 ADHQGGQEESSPRSYLHYYSTVYLVISHTPSSLE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863571|emb|CAN79767.1| hypothetical protein VITISV_019403 [Vitis vinifera]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/454 (53%), Positives = 305/454 (67%), Gaps = 24/454 (5%)

Query: 1   MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQ-DHEDIGVNRGICTCGQQ 59
           + RT   + K LG  TP+I SV  G++G DA+T+EF+EVK+  D ED  +        + 
Sbjct: 93  LERTHKLITKKLGSATPVITSVARGIIGSDAITEEFKEVKWGVDVEDFNL-----PANKD 147

Query: 60  SGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTS 119
            GIVL VG++PGLKVDAIPLLR  E                P + +ID+FVMDI+N++ +
Sbjct: 148 RGIVLIVGFMPGLKVDAIPLLRELE---------------EPGISLIDKFVMDIRNFSAA 192

Query: 120 VSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNP 179
           VSGC SP GI+MFG +  D KP++EK+DYAMSM TV +G+E   F YRSGDD RN+ G+ 
Sbjct: 193 VSGCTSPTGIVMFGDKHADMKPVLEKMDYAMSMETVILGEESGHFMYRSGDDSRNISGSL 252

Query: 180 AFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVR--ANHAEGSTWLT 237
               D VALVFA D DKP G GE QFH+A+S GV  +GP  KA SV+   + +E STWLT
Sbjct: 253 KNSCDGVALVFARDNDKPQGVGESQFHVALSTGVVPVGPTLKAASVKVKGDGSERSTWLT 312

Query: 238 AKREGHHVILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGI 296
           A++EG    LDGE++L  I D++EN     +LY+GVTKRRKCSIGSEK R +TTL FH +
Sbjct: 313 ARKEGLKEALDGERLLHDIYDEMENENASHDLYIGVTKRRKCSIGSEKVRWVTTLEFHDV 372

Query: 297 RGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDV 356
            GGD+EYL+VDGVGIKTGD F+FY+ D + AL++CR+ SE  RNLK   + K     R V
Sbjct: 373 LGGDEEYLFVDGVGIKTGDPFRFYRSDSDTALSSCRHVSEEFRNLKQAWTHKNSYHFRGV 432

Query: 357 ANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSM 416
           A+  D+ EV GG IFSC GRG+SFFG  NVDS PF ENFP  PLAGI CGGEIGR  LS 
Sbjct: 433 ADGGDKTEVCGGIIFSCYGRGDSFFGQANVDSSPFLENFPGFPLAGIMCGGEIGRVHLSS 492

Query: 417 TGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 450
              +  +E  + R YLH YST YLVIS++ +  E
Sbjct: 493 ADHQGGQEESSPRSYLHYYSTVYLVISHTPSSLE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540189|ref|XP_002511159.1| conserved hypothetical protein [Ricinus communis] gi|223550274|gb|EEF51761.1| conserved hypothetical protein [Ricinus communis]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/447 (53%), Positives = 306/447 (68%), Gaps = 40/447 (8%)

Query: 10  KHLGLRTPIILSVVHGVMGRDALTDE-----FREVKFQDHEDIGVNRGICTCGQQSGIVL 64
           +  G RTP+I++  +G+MGRDA+T+E     +      D E + +N         SG +L
Sbjct: 106 RKFGSRTPLIVTWANGIMGRDAVTNEDDSSNYDGDGDGDDEHMEIN---------SGFLL 156

Query: 65  TVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCA 124
           TVG++PGLKVD IP LR+                   P+ MID FVMDI+NYTTS SGC 
Sbjct: 157 TVGFVPGLKVDVIPYLRKIR---------------PAPMEMIDIFVMDIRNYTTSASGCT 201

Query: 125 SPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPAFISD 184
           SPVGIIMF  ED D KPI+EKLDYAMS  T+ VGDER++F YRS  D      NP   + 
Sbjct: 202 SPVGIIMFASEDFDLKPIMEKLDYAMSKETIIVGDERTKFLYRSRID----STNP--FAK 255

Query: 185 AVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHH 244
           A+ALVFA D++KPHG GEIQFH A+S GVSAIGPR+K  S R    + +TWLTA++EG  
Sbjct: 256 AIALVFAKDREKPHGLGEIQFHAALSNGVSAIGPRYKTASAREAFHDRNTWLTARQEGQP 315

Query: 245 VILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGGDQEY 303
            ILDG++IL  I D+LENR    +LY+GVT+ RK  I  EK RL+++L+F+G+ GGD+EY
Sbjct: 316 EILDGQRILNDINDELENRIGDTDLYIGVTELRKRRIRKEKPRLMSSLSFYGVMGGDEEY 375

Query: 304 LYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRK 363
           L+V G+GI+T DYFQFY  D +AAL++CRN S N+RNL+L+ S K +L   D AN   +K
Sbjct: 376 LFVHGIGIRTADYFQFYHSDPSAALSSCRNVSANLRNLRLDWSCKKYLYPTDGANEF-KK 434

Query: 364 EVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-KLSMTGQESQ 422
           E +GGFIFSCCGRG +FFG  NVDS PF ENFP  PLAGIFCGGEIGR   +S T  + +
Sbjct: 435 ECIGGFIFSCCGRGEAFFGSPNVDSSPFLENFPGVPLAGIFCGGEIGRSFSISNTLDDRE 494

Query: 423 EESPAERRYLHVYSTAYLVISYSAAPS 449
           E +P+  R LHV+S+ YLV+SY+ +P+
Sbjct: 495 ESTPS--RCLHVFSSVYLVLSYTPSPA 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122060|ref|XP_002318743.1| predicted protein [Populus trichocarpa] gi|222859416|gb|EEE96963.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/477 (51%), Positives = 319/477 (66%), Gaps = 53/477 (11%)

Query: 1   MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQS 60
           +R  LDFL   LG +TPII+S   G+MGRDA+T E REV  +++   G +    +C    
Sbjct: 100 LREKLDFLATKLGSQTPIIVSCASGIMGRDAVTGEHREVMLEEYWADGES---ISC---F 153

Query: 61  GIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSV 120
           GI+LTVG+LPGLKVD IPLL+ ++ V  P               ++D FVM+I++Y  SV
Sbjct: 154 GIILTVGFLPGLKVDVIPLLQPRK-VHRPA--------------LVDYFVMNIRDYAASV 198

Query: 121 SGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA 180
           SG ASP GII+FG E  DQKP++EKLD+AMS +TV VGDER++F YRSG + RN  G+  
Sbjct: 199 SGWASPAGIILFGDEGADQKPVMEKLDHAMSRDTVIVGDERAQFLYRSGVESRNDYGSSE 258

Query: 181 FISDAVALVFASDKDKPHG---------------------TGEIQFHLAMSEGVSAIGPR 219
           +   AVALVFA D+DKP G                     TGEIQFH A+S GVSAIGPR
Sbjct: 259 YFPAAVALVFARDRDKPCGIGLLISVFAISSFATKMDWQCTGEIQFHAALSSGVSAIGPR 318

Query: 220 HKAVSVRANHAEG--STWLTAKREGHHVILDGEQILRHID-QLENRFPQVELYVGVTKRR 276
           +KAVSVR   +E   +T LTA+REG   I DG++IL  I+ +L N+  + +LY+GVT++R
Sbjct: 319 YKAVSVRKIGSETGCTTLLTARREGEQEIQDGQRILDDINNELVNQIGRPDLYIGVTEQR 378

Query: 277 KCSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASE 336
           KC IGSEKSR++T L FHG+ GGDQEYL+ DGVGI+TGDYFQFY  D   AL++C   S+
Sbjct: 379 KCFIGSEKSRVMTFLVFHGVMGGDQEYLFADGVGIRTGDYFQFYHSDPTTALSSCNEVSK 438

Query: 337 NIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFP 396
           N R LKL+ S +  L +  V++++  KE++GGF+FSCCGRG SFF   NVDS PF +NFP
Sbjct: 439 NFRKLKLDWSSRNCL-QAGVSDNVCSKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFP 497

Query: 397 SAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRY---LHVYSTAYLVISYSAAPSE 450
             P+AG+FC GEIGRG   +      +E P ER     LHVYSTAYL++SY+ AP+E
Sbjct: 498 GVPMAGVFCRGEIGRGFSVLNA----DEGPEERTLHCCLHVYSTAYLLVSYTPAPAE 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488987|gb|ABK96301.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/451 (51%), Positives = 298/451 (66%), Gaps = 31/451 (6%)

Query: 5   LDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVL 64
           LDFL   LG +TPII+S   G+MGRDA+TDE++EV  +D    G +          GI+L
Sbjct: 108 LDFLAAKLGSKTPIIVSCAGGIMGRDAVTDEYKEVMIEDFWVDGASN------SSFGIML 161

Query: 65  TVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCA 124
           +VG+LPGLKVDAIPLLR ++               A  V M+D+FVMDI+NY   VS   
Sbjct: 162 SVGFLPGLKVDAIPLLRPRK---------------ARGVAMVDKFVMDIRNYAALVSDST 206

Query: 125 SPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA--FI 182
           SP  IIMFG E  DQKP++EKLD+AMS  T+ VGDER++F YRSG + RNV       + 
Sbjct: 207 SPSLIIMFGSEKTDQKPVMEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDHYF 266

Query: 183 SDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKR 240
           SDAVALVFA D+++P GTGEI FH A+S GVSAIGPR KAVS     +E   STWLT +R
Sbjct: 267 SDAVALVFARDQNRPSGTGEIHFHSALSSGVSAIGPRFKAVSANEIESETGLSTWLTVRR 326

Query: 241 EGHHVILDGEQILRHIDQLENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGG 299
           E    IL G++I   ID + N    Q +L++GV+++RKC +G EK R + +LAFH + GG
Sbjct: 327 EAEQEILGGQRI---IDDINNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGG 383

Query: 300 DQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANS 359
           D+E+L+VDGVGIKTGDYF  Y PD +AAL++C N S+N RNLKL+ S +    +   A  
Sbjct: 384 DEEHLFVDGVGIKTGDYFHLYHPDPSAALSSCSNISKNFRNLKLDWSFRS--CQLHAARG 441

Query: 360 IDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQ 419
           +  KEV+GGF+F+C GRG SFFG  NVDS PF +NFP   +AGIF  GEIGRG   +   
Sbjct: 442 VGEKEVIGGFVFACWGRGESFFGHNNVDSSPFLDNFPGVLMAGIFTYGEIGRGFSILNTD 501

Query: 420 ESQEESPAERRYLHVYSTAYLVISYSAAPSE 450
           ES +E       +HVYST YL++SY+ AP E
Sbjct: 502 ESGQEVKTLCFCVHVYSTVYLLVSYTPAPIE 532

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118086|ref|XP_002331554.1| predicted protein [Populus trichocarpa] gi|222873778|gb|EEF10909.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/452 (51%), Positives = 299/452 (66%), Gaps = 32/452 (7%)

Query: 5   LDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQSGIVL 64
           LDFL   LG +TPII+S   G+MGRDA+TDE++EV  +D    G +          GI+L
Sbjct: 104 LDFLAAKLGSKTPIIVSCAGGIMGRDAVTDEYKEVMIEDFWVDGASN------SSFGIML 157

Query: 65  TVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSVSGCA 124
            VG+LPGLKVDAIPLLR ++               A  V M+D+FVMDI+NY   VS   
Sbjct: 158 AVGFLPGLKVDAIPLLRPRK---------------AQGVAMVDKFVMDIRNYAALVSDST 202

Query: 125 SPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA--FI 182
           SP  IIMFG E  DQKP++EKLD+AMS  T+ VGDER++F YRSG + RNV       + 
Sbjct: 203 SPSLIIMFGSEKTDQKPVMEKLDHAMSRETIVVGDERAQFLYRSGIESRNVYYGSVDQYF 262

Query: 183 SDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLTAKR 240
           SDAVALVFA D+++P GTGEI FH A+S GVSAIGPR KAVS     +E   STWL+ +R
Sbjct: 263 SDAVALVFARDQNRPSGTGEIHFHSALSSGVSAIGPRFKAVSANEIESETGLSTWLSVRR 322

Query: 241 EGHHVILDGEQILRHIDQLENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFHGIRGG 299
           EG   IL G++I   ID + N    Q +L++GV+++RKC +G EK R + +LAFH + GG
Sbjct: 323 EGGQEILGGQRI---IDDINNELGNQTKLFIGVSEQRKCFVGPEKPRQMRSLAFHEVMGG 379

Query: 300 DQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANS 359
           D E+L+VDGVGIKTGDYF  Y PD +AAL++C N S+N RNLKL+ S +    +   A  
Sbjct: 380 DVEHLFVDGVGIKTGDYFHLYHPDPSAALSSCSNISKNFRNLKLDWSFRS--CQLHAARG 437

Query: 360 IDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-KLSMTG 418
           +  KEV+GGF+F+C GRG SFFG  NVDS PF +NFP  P+AGIF  GEIGRG  +  T 
Sbjct: 438 VGEKEVIGGFVFACWGRGESFFGHSNVDSSPFLDNFPGVPMAGIFTYGEIGRGFSILNTD 497

Query: 419 QESQEESPAERRYLHVYSTAYLVISYSAAPSE 450
            ES +E       +HVYST YL++SY+ AP E
Sbjct: 498 FESGQEDKTLCFCVHVYSTVYLLVSYTPAPIE 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115878|ref|XP_002317147.1| predicted protein [Populus trichocarpa] gi|222860212|gb|EEE97759.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/456 (48%), Positives = 296/456 (64%), Gaps = 38/456 (8%)

Query: 1   MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDH--EDIGVNRGICTCGQ 58
           +  TL+FL   LG +TPII+S  +G++GRDA+TDE +EV  +D   +    N G      
Sbjct: 130 LSETLNFLAAKLGSKTPIIVSCANGIIGRDAVTDEHQEVMLEDFWADAASKNSGF----- 184

Query: 59  QSGIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTT 118
             G++LTVG+LPGL+V+AIPLLR ++               A  + ++D+FVMDI+NY  
Sbjct: 185 --GVLLTVGFLPGLQVEAIPLLRPRKA--------------ASRMALVDKFVMDIRNYAA 228

Query: 119 SVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGN 178
           +VSG  SP  +IMFG E  +QKP++EKLD+AMS  T   GDER++F Y+SG + RNV G+
Sbjct: 229 NVSGSTSPALVIMFGGEKAEQKPVMEKLDHAMSRETFIAGDERAQFLYKSGIESRNVHGS 288

Query: 179 -PAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STW 235
              +ISDAV LVFA D+ +    GEIQFH A+S GVS IGPR+K VSV+    E   +T 
Sbjct: 289 GNEYISDAVVLVFARDRHRASDVGEIQFHSALSSGVSTIGPRYKVVSVKEIQPETDLTTC 348

Query: 236 LTAKREGHHVILDGEQILRHIDQLENRF-PQVELYVGVTKRRKCSIGSEKSRLITTLAFH 294
           L A+REG   IL G++I   ID + N    + EL++GV+K+R+C IGSE  +L+ +LAFH
Sbjct: 349 LKARREGEQEILGGQRI---IDDINNELVNKTELFIGVSKQRQCVIGSENPKLLRSLAFH 405

Query: 295 GIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRR 354
            ++GGD E+L+V G GI +GDYF FY  D  AAL+A  N S+N RNLKL+ S        
Sbjct: 406 EVKGGDGEHLFVSGDGIGSGDYFHFYHSDSKAALSATSNVSKNFRNLKLDWSSSQLH--- 462

Query: 355 DVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG-- 412
             A  +  KEV+GG +FSC GRG SFFG  NVDS PF +NFP  P+AGIFC GE+GRG  
Sbjct: 463 --AGGVGSKEVVGGLVFSCWGRGESFFGHSNVDSSPFLDNFPGIPMAGIFCYGEVGRGFT 520

Query: 413 KLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAP 448
            L+    E QEE  +    LHVYST Y+++SY+ AP
Sbjct: 521 MLNADDHEDQEEKTS-CCCLHVYSTIYVLVSYTPAP 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484799|gb|ABK94267.1| unknown [Populus trichocarpa]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/343 (57%), Positives = 253/343 (73%), Gaps = 5/343 (1%)

Query: 111 MDIQNYTTSVSGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGD 170
           M+I++Y  SVSG ASP GII+FG E  DQKP++EKLD+AMS +TV VGDER++F YRSG 
Sbjct: 1   MNIRDYAASVSGWASPAGIILFGDEGADQKPVMEKLDHAMSRDTVIVGDERAQFLYRSGV 60

Query: 171 DLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHA 230
           + RN  G+  +   AVALVFA D+DKP GTGEIQFH A+S GVSAIGPR+KAVSVR   +
Sbjct: 61  ESRNDYGSSEYFPAAVALVFARDRDKPCGTGEIQFHAALSSGVSAIGPRYKAVSVRKIGS 120

Query: 231 EG--STWLTAKREGHHVILDGEQILRHI-DQLENRFPQVELYVGVTKRRKCSIGSEKSRL 287
           E   +T LTA+REG   I DG++IL  I ++L N+  + +LY+GVT++RKC IGSEKSR+
Sbjct: 121 ETGCTTLLTARREGEQEIQDGQRILDDINNELVNQIGRPDLYIGVTEQRKCFIGSEKSRV 180

Query: 288 ITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSG 347
           +T L FHG+ GGDQEYL+ DGVGI+TGDYFQFY  D   AL++C   S+N R LKL+ S 
Sbjct: 181 MTFLVFHGVMGGDQEYLFADGVGIRTGDYFQFYHSDPTTALSSCNEVSKNFRKLKLDWSS 240

Query: 348 KGFLGRRDVANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGG 407
           +  L +  V++++  KE++GGF+FSCCGRG SFF   NVDS PF +NFP  P+AG+FC G
Sbjct: 241 RNCL-QAGVSDNVCSKELVGGFVFSCCGRGESFFERCNVDSSPFLDNFPGVPMAGVFCRG 299

Query: 408 EIGRGKLSMTGQESQEESPAERRYLHVYSTAYLVISYSAAPSE 450
           EIGRG   +   E  EE       LHVYSTAYL++SY+ AP+E
Sbjct: 300 EIGRGFSVLNADEGPEERTLH-CCLHVYSTAYLLVSYTPAPAE 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115874|ref|XP_002317146.1| predicted protein [Populus trichocarpa] gi|222860211|gb|EEE97758.1| predicted protein [Populus trichocarpa]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/416 (50%), Positives = 276/416 (66%), Gaps = 32/416 (7%)

Query: 1   MRRTLDFLVKHLGLRTPIILSVVHGVMGRDALTDEFREVKFQDHEDIGVNRGICTCGQQS 60
           +  TL  L   LG +TPII+S  +G++GRDA+T E +EV     ED  V+      G   
Sbjct: 101 LSETLYLLAAKLGSKTPIIVSCTNGIIGRDAVTSEHKEVML---EDFWVDAASKNSG--F 155

Query: 61  GIVLTVGYLPGLKVDAIPLLRRKEIVQVPVDDTYVDVYLAPPVPMIDQFVMDIQNYTTSV 120
           G++LTVGYLPGLKV+A+PLLR ++               A PV MID FVMDI+NY+ SV
Sbjct: 156 GMLLTVGYLPGLKVEALPLLRPRK---------------AGPVAMIDNFVMDIKNYSASV 200

Query: 121 SGCASPVGIIMFGKEDMDQKPIIEKLDYAMSMNTVFVGDERSRFAYRSGDDLRNVCGNPA 180
           SG  SP  IIMFG E+ D KP++EKLD+AMS  T+  G  RS+F YR G + RN+ G+  
Sbjct: 201 SGSTSPALIIMFGGEEADLKPVMEKLDHAMSRETIIAGGMRSQFLYRRGIESRNIYGSST 260

Query: 181 -FISDAVALVFASDKDKPHGTGEIQFHLAMSEGVSAIGPRHKAVSVRANHAEG--STWLT 237
            + +DAVALVFA D+DKP G G+IQFH A+S GVSAIGPR+KAVSV+   +E   +TWLT
Sbjct: 261 KYFTDAVALVFARDEDKPSGEGKIQFHSAISSGVSAIGPRYKAVSVKETQSETGLTTWLT 320

Query: 238 AKREGHHVILDGEQILRHID-QLENRFPQVELYVGVTKRRKCSIGSEKSRLITTLAFHGI 296
           ++REG   IL G+ I+  I+ +L N+    EL++GV+K+R+  IGSE  +L+ +LA H +
Sbjct: 321 SRREGEQEILGGQMIIDSIESELVNK---TELFIGVSKQRQSVIGSENPKLLRSLALHQV 377

Query: 297 RGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDV 356
           +GGD E+L+V G GI +GDYF FY  D  AAL+A  N S+  RNLKL+     +   +  
Sbjct: 378 KGGDGEHLFVSGDGIGSGDYFHFYHSDPKAALSATSNVSKYFRNLKLD-----WRSCQLH 432

Query: 357 ANSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG 412
           A  +  KEV+GG +FSC GRG SFFG  NVDS PF +NFP  P+AGIF  GE+GRG
Sbjct: 433 AGDVGSKEVVGGLVFSCWGRGASFFGHSNVDSSPFLDNFPGIPMAGIFGCGEVGRG 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
UNIPROTKB|H3BTR7	78	FBXO22 "F-box only protein 22"	0.111	0.641	0.442	6.5e-05

UNIPROTKB|H3BTR7 FBXO22 "F-box only protein 22" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query:   368 GFIFSCCGRGNSFFGGL-NVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTG 418
             GF+F+C GRG  ++    NV++  F + FPS PL G F  GEIG  ++ +TG
Sbjct:    18 GFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRI-VTG 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      450       450   0.00092  118 3  11 22  0.38    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  259 KB (2138 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.02u 0.14s 34.16t   Elapsed:  00:00:02
  Total cpu time:  34.02u 0.14s 34.16t   Elapsed:  00:00:02
  Start:  Mon May 20 19:48:03 2013   End:  Mon May 20 19:48:05 2013

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010830 "regulation of myotube differentiation" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017954001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (526 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
pfam10442	137	pfam10442, FIST_C, FIST C domain	7e-11
COG4398	389	COG4398, COG4398, Uncharacterized protein conserve	9e-08

>gnl|CDD|220757 pfam10442, FIST_C, FIST C domain

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 311 IKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLGGFI 370
           +  G+  Q    D    +   R A E  R                       +   G  +
Sbjct: 56  VPEGEELQLMLRDAEDLIEDLRRALEAARE--------------------GGRPPAGALL 95

Query: 371 FSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRG 412
           FSC GRG   FG  + +     E    AP+ G F  GEIG G
Sbjct: 96  FSCIGRGLLLFGEPDEELEAVREVLGDAPVIGFFTYGEIGPG 137

The FIST C domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids. Length = 137

>gnl|CDD|226833 COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 53.7 bits (129), Expect = 9e-08
 Identities = 19/45 (42%), Positives = 24/45 (53%)

Query: 366 LGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIG 410
           +G  +F+C GRG   FG  + D+    E     PLAG F  GEIG
Sbjct: 323 VGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIG 367

Length = 389

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
COG4398	389	Uncharacterized protein conserved in bacteria [Fun	100.0
COG3287	379	Uncharacterized conserved protein [Function unknow	99.89
PF10442	136	FIST_C: FIST C domain; InterPro: IPR019494 This en	99.76
PF08495	198	FIST: FIST N domain; InterPro: IPR013702 The FIST	99.56

>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1e-50  Score=396.19  Aligned_cols=254  Identities=24%  Similarity=0.318  Sum_probs=220.2

Q ss_pred             cEEEEecCC-CCChhHHHHHhhhhcCCCceeeccc-ccccccccCCCCcceeCCCceecCeEEEEEecCCCCCCCCCCeE
Q 013046          127 VGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDE-RSRFAYRSGDDLRNVCGNPAFISDAVALVFASDKDKPHGTGEIQ  204 (450)
Q Consensus       127 ~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~-agd~~f~~g~~sr~~~~~~~~~~gaVal~f~~d~~~~~~~G~i~  204 (450)
                      ...|++.|+ ++....++++|+.++|..+ ++||. +|.   +.+.+.|.++..+.+.++.|||.+         .| ++
T Consensus       126 ~~~ilL~dp~t~~~n~li~~l~~~~Pgtt-vvGG~~Sgg---~~~G~~~Lf~~~~~~~~G~vGv~L---------~G-i~  191 (389)
T COG4398         126 DLHLLLPDPYTFPSNLLIEHLNTDLPGTT-VVGGVVSGG---RRRGDTRLFRDHDVLTSGVVGVRL---------PG-IR  191 (389)
T ss_pred             CceEEccCCcccchHHHhhccCcCCCCce-EEccEeecC---ccCCceEEeecCCcccCceeEEee---------cc-ce
Confidence            355688999 9999999999999999764 55664 443   223344444444588888999999         67 99


Q ss_pred             EEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccCchHhhhhh-------HhhccCCCcceeEEEEeccc
Q 013046          205 FHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHID-------QLENRFPQVELYVGVTKRRK  277 (450)
Q Consensus       205 ~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~-------e~~~~l~~~~L~iGva~~~~  277 (450)
                      ..+.|+|||||||.+|.||     ++++|+|         .||+|+|-|..|.       +.+++|.+++|++|++++|.
T Consensus       192 l~~vVsQGCRPIGeP~iVt-----~a~~niI---------tEl~gr~PL~~Lr~ii~~lsp~er~L~~~~L~iGi~~DE~  257 (389)
T COG4398         192 LVPVVSQGCRPIGEPYIVT-----GADGNII---------TELGGRPPLQRLREIVEGLSPDERALVSHGLQIGIVVDEH  257 (389)
T ss_pred             ecchhccCcccCCCceEee-----ccCceeE---------eecCCCChHHHHHHHhhccChhhHHHHhcCceEEEEehhh
Confidence            9999999999999999996     9999999         8999999887555       44788999999999999998


Q ss_pred             ccCCCCCceeEEEEEEecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013046          278 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA  357 (450)
Q Consensus       278 ~~~~~~~~~~vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~  357 (450)
                      +....+++|++|.+++.|+.+|+    |.+++-|++||++||++||++++..||+-..+..   ..++            
T Consensus       258 ~~~~~qGDFlIR~lLG~DPs~Ga----IaIgd~Vr~G~~lQF~~RD~~as~~dL~~l~er~---~~e~------------  318 (389)
T COG4398         258 LAAPGQGDFLIRGLLGADPSTGA----IAIGEVVRVGATLQFQVRDAAAADKDLRLLVERA---AAEL------------  318 (389)
T ss_pred             hcCCCCCceEeeeccccCCCCCc----eeecceeccCcEEEEEEcccccchhHHHHHHHHH---HhhC------------
Confidence            77777899999999999999999    9999999999999999999999998777655544   2222            


Q ss_pred             CccCCCceeEEEEEEeCCCCcCCCCCCccchhhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013046          358 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST  437 (450)
Q Consensus       358 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~~~g~~~~~~~~~~~~LH~yT~  437 (450)
                          ...++|||||||+|||..|||.+|+|+++|.+.||++|++||||+|||||     +++         +|+|||||+
T Consensus       319 ----~~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gipl~GFF~~GEIGp-----V~g---------r~~LHG~Ts  380 (389)
T COG4398         319 ----PGRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIPLAGFFAAGEIGP-----VAG---------RNALHGFTA  380 (389)
T ss_pred             ----CCccceeEEEEecCccccccCCCCccHHHHHHHhCCCcccceeecCcccc-----ccc---------hhhhhccce
Confidence                35789999999999999999999999999999999999999999999999     999         999999999


Q ss_pred             eEeeeecC
Q 013046          438 AYLVISYS  445 (450)
Q Consensus       438 v~~l~s~~  445 (450)
                      ++++|.++
T Consensus       381 ~~ai~~~~  388 (389)
T COG4398         381 SMALFVDD  388 (389)
T ss_pred             eeEEEeec
Confidence            99999875

>COG3287 Uncharacterized conserved protein [Function unknown]

Probab=99.89  E-value=1e-22  Score=208.44  Aligned_cols=245  Identities=16%  Similarity=0.190  Sum_probs=186.2

Q ss_pred             CCcEEEEecCC-CCChhHHHHHhhhhcCCCceeecccccc-cccccCCCCcceeCCCceecC-eEEEEEecCCCCCCCCC
Q 013046          125 SPVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHGTG  201 (450)
Q Consensus       125 ~p~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~sr~~~~~~~~~~g-aVal~f~~d~~~~~~~G  201 (450)
                      .+.-.|.|-|+ +.-.+.+++++..+....+||.||.+|| +.|.++    .++.++.+.++ |+-++|         ++
T Consensus       128 r~~~~l~f~dgl~~~ee~l~~~~~~~~~~~iPi~GGsAaD~~~~e~t----~v~~~g~v~~~aavi~l~---------~t  194 (379)
T COG3287         128 RPVLALTFIDGLSTSEEVLLDGAVLAALETIPIFGGSAADDLEFERT----YVFDEGEVHEDAAVILLF---------GT  194 (379)
T ss_pred             CceEEEEEeccCCcchhhhhhhhhcccccceeeeccccCCCCccceE----EEEEccccccCceEEEEe---------cc
Confidence            34777899999 4446667776777778889999999999 799876    66778788888 555556         99


Q ss_pred             CeEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccCchHhhhhhHhh---ccCCC-cceeEEEEeccc
Q 013046          202 EIQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQILRHIDQLE---NRFPQ-VELYVGVTKRRK  277 (450)
Q Consensus       202 ~i~~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~pAL~~L~e~~---~~l~~-~~L~iGva~~~~  277 (450)
                      .+.|+++.++||.|.+.+++||     |+++|+|         +||||+||.+.+.+.-   ++++. ...-.++...+.
T Consensus       195 ~l~f~~~~~~g~~Pt~~~~~VT-----ka~~~vV---------~EiDgePA~e~Y~e~vg~~e~l~~~~~~~~pl~~~~~  260 (379)
T COG3287         195 QLKFGHGFAHGFVPTDKTGVVT-----KADGDVV---------YEIDGEPAAEEYAEVVGAVEELDPEMFIPNPLGVRDL  260 (379)
T ss_pred             eEEeecccccceEEccceEEEE-----eecCcEE---------EEeCCCcHHHHHHHHhCchhhcChhHhcccceEEEeC
Confidence            9999999999999999999996     8899999         9999999999555442   34432 222234433331


Q ss_pred             ccCCCCCceeEEEEEEecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 013046          278 CSIGSEKSRLITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVA  357 (450)
Q Consensus       278 ~~~~~~~~~~vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~  357 (450)
                           ...+++|.+.++|++++.    +.+-..++.|..++++....  ...++++   .++....++            
T Consensus       261 -----~~~y~vr~p~~~~e~~~~----~f~~~~i~~~v~lr~~~~~~--~~~~~e~---~~~~a~~~~------------  314 (379)
T COG3287         261 -----GPLYYVRAPQFVDEEGGL----IFLSAAIPLGVVLRLGETGG--IERVTER---ALRRAFEDL------------  314 (379)
T ss_pred             -----CCcEEEeCcceeccccce----EEeeccCCCccEEEeecCCc--ccHHHHH---HHHHHHhhc------------
Confidence                 467999999999988554    44555999999999987555  3322222   222223222            


Q ss_pred             CccCCCceeEEEEEEeCCCCcCCCCCCccchhhHHhhCCCCceeeeecccccCCCCCccCCCCCCCCCCcccccccccce
Q 013046          358 NSIDRKEVLGGFIFSCCGRGNSFFGGLNVDSFPFFENFPSAPLAGIFCGGEIGRGKLSMTGQESQEESPAERRYLHVYST  437 (450)
Q Consensus       358 ~~~~~~~p~gaLlFSC~GRG~~lfg~~~~E~~~v~e~lp~vPlaGFy~~GEIgP~~~~~~~g~~~~~~~~~~~~LH~yT~  437 (450)
                          ++++.+-|.|+|++|  .++-+.+.+.+.+++.+|.=|++|||||||++|.     .+         .+.-||+|.
T Consensus       315 ----~~~~~~vl~f~C~~R--~l~~~~~~~~~~~~e~l~~~~~vGf~tyGE~~~~-----~g---------~~~h~Nqtf  374 (379)
T COG3287         315 ----PKAPALVLVFDCALR--RLFLDTDKERQPLKEQLPEDPCVGFNTYGEQGPI-----TG---------ENVHHNQTF  374 (379)
T ss_pred             ----cCCCceEEEEehhhh--hhhhhhhhhhhHHHHhcccCceeccccccccccc-----cc---------cceeeeeEE
Confidence                234899999999999  6777999999999999996699999999999993     35         588899998


Q ss_pred             eEeee
Q 013046          438 AYLVI  442 (450)
Q Consensus       438 v~~l~  442 (450)
                      +-..|
T Consensus       375 ~~v~f  379 (379)
T COG3287         375 VGVAF  379 (379)
T ss_pred             EEEeC
Confidence            76543

>PF10442 FIST_C: FIST C domain; InterPro: IPR019494 This entry represents a novel sensory domain, designated FIST C (short for F-box and intracellular signal transduction, C-terminal), which is present in signal transduction proteins from bacteria, archaea and eukaryotes

Probab=99.76  E-value=1.8e-18  Score=153.01  Aligned_cols=98  Identities=23%  Similarity=0.308  Sum_probs=85.6

Q ss_pred             EEEEEEecCCCCCceeeEeeccCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCccCCCceeE
Q 013046          288 ITTLAFHGIRGGDQEYLYVDGVGIKTGDYFQFYQPDHNAALAACRNASENIRNLKLNSSGKGFLGRRDVANSIDRKEVLG  367 (450)
Q Consensus       288 vR~ll~~d~~~gs~e~~l~~g~~I~~G~~vqf~~RD~~aA~~dl~~~a~~lr~l~~~~~~k~~l~~~~~~~~~~~~~p~g  367 (450)
                      +|.++.+|+.+|+    |+++..|++|+.||||.+|++.+.++++++++++       .               ..+|.+
T Consensus        37 ir~~~~~~~~~gs----l~~~~~v~eG~~v~l~~~~~~~~~~~~~~~~~~~-------~---------------~~~p~~   90 (136)
T PF10442_consen   37 IRSPLAIDPEDGS----LTFAGDVPEGSEVQLMEGDPEDIIESAEEALEKA-------P---------------GPPPEG   90 (136)
T ss_pred             EeeeeEEcCCCCE----EEEeeecCCCCEEEEEcCCHHHHHHHHHHHHHhh-------c---------------CCCceE
Confidence            9999999998999    9999999999999999999999997665544433       1               357999


Q ss_pred             EEEEEeCCCCcCCCCCCccchhhHHhhCCC-CceeeeecccccCC
Q 013046          368 GFIFSCCGRGNSFFGGLNVDSFPFFENFPS-APLAGIFCGGEIGR  411 (450)
Q Consensus       368 aLlFSC~GRG~~lfg~~~~E~~~v~e~lp~-vPlaGFy~~GEIgP  411 (450)
                      +|+|+|+||...|....+.|++.+++.+|+ +|++||||||||+|
T Consensus        91 ~l~f~C~~R~~~l~~~~~~e~~~~~~~~~~~~p~~Gf~t~GEi~~  135 (136)
T PF10442_consen   91 ALIFSCIGRRLFLGERFDEELEAFQEILGGDAPFIGFYTYGEIGP  135 (136)
T ss_pred             EEEEECCCCHHHhCcchHHHHHHHHHHhCCCCCEEEEcccccccc
Confidence            999999999555544788999999999995 99999999999998

The chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya

Probab=99.56  E-value=3.3e-14  Score=131.76  Aligned_cols=99  Identities=22%  Similarity=0.361  Sum_probs=85.9

Q ss_pred             CcEEEEecCC-CCChhHHHHHhhhhcCCCceeecccccc-cccccCCCCcceeCCCceecC-eEEEEEecCCCCCCCCCC
Q 013046          126 PVGIIMFGKE-DMDQKPIIEKLDYAMSMNTVFVGDERSR-FAYRSGDDLRNVCGNPAFISD-AVALVFASDKDKPHGTGE  202 (450)
Q Consensus       126 p~gii~fgd~-~~d~~~ll~gL~~al~~~~vI~Gg~agd-~~f~~g~~sr~~~~~~~~~~g-aVal~f~~d~~~~~~~G~  202 (450)
                      ...+++|.|+ +.+.++++++|.......++|+||.+|+ ..|.++    .++.++.+.++ +|+++|         .++
T Consensus        97 ~~~~l~~~d~~~~~~~~~l~~l~~~~~~~~~i~GG~a~~~~~~~~~----~v~~~~~~~~~g~v~~~~---------~~~  163 (198)
T PF08495_consen   97 SPFLLLFADGLSSSEEELLEGLYSSVGPDIPIFGGSAGDNLDFERT----YVFANGQVYSDGAVVVAF---------SGS  163 (198)
T ss_pred             CcEEEEEeCCCCcCHHHHHHHHHHhcCCCceEEEEECCCCCcCCce----EEEEeeeeccCcEEEEEE---------cCC
Confidence            4678899998 8889999999988889999999999998 556554    66654455555 999999         679


Q ss_pred             eEEEEEeccCCeeeCCCeEEEEeccccccCceEEcccccCccccccCch
Q 013046          203 IQFHLAMSEGVSAIGPRHKAVSVRANHAEGSTWLTAKREGHHVILDGEQ  251 (450)
Q Consensus       203 i~~~~~vsqGcrPiGp~~~VT~v~~T~segNvll~l~~~g~~~eLDg~p  251 (450)
                      +++.+.+.|||+|+|.+++||     ++++|+|         +|||+||
T Consensus       164 l~~~~~~~~g~~p~g~~~~VT-----~a~~~~I---------~eld~~P  198 (198)
T PF08495_consen  164 LKIDSFVSHGWEPIGKPMTVT-----KAEGNII---------YELDGRP  198 (198)
T ss_pred             ceEEEEEecCeEeCCCCEEEE-----EecCCEE---------EEECCcC
Confidence            999999999999999999996     8899999         9999997

Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00