Citrus Sinensis ID: 013051

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
MESSILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQSLSGASDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEELPALVYEARPTVSENERNRRSGLRFLLGGVSDSGSVELQVVSRDNADGRENHGNPEYSAVNVGTFGNEMHERSSDEVERLPLVGHLRDGFSSSGSSSDRSTSVNRENEIVMEEEMSPLVDMSLLGNNRQRASDSLENSLITDRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF
cccHHHcHHHHHHHEEEHHHHHHHHHHHHHHHHccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHccccccccccccccHHHcccccccEEEcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccHHHHHHHHHHHHHHHcHHEEEEEEEHHEHHHcccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccEEEEEcccEccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHEEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MESSILDSIGSEIIGVMTPVSLCMLLVVLLVYSlspseqslsgasdpfrtAANLVylerpddsstqkLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQqfsipvdaFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWALLLALALYDLFavlapggpLKLLVELASsrdeelpalvyearptvsenernRRSGLRFLlggvsdsgsVELQVvsrdnadgrenhgnpeysavnvgtfgnemherssdeverlplvghlrdgfsssgsssdrstsvnreneivmeeemsplvdmsllgnnrqrasdSLENSLITDRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRralpalpisitLGVLFYFLTRLLmepfvvgtttnllmf
messildsIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQSLSGASDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEELPAlvyearptvsenernrRSGLRFllggvsdsgsvELQVVSrdnadgrenhgnpeysavnvGTFGNEMHERSSDEVERLPLVGHLrdgfsssgsssdrstsvnrenEIVMEEEMSPLVDMSLLGNNRQRASDSLENSLITDRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF
MESSILDSIGSEIIGVMTPvslcmllvvllvyslspsEQSLSGASDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGsiflsiiqqfsiPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWalllalalydlfavlaPGGPLKLLVELASSRDEELPALVYEARPTVSENERNRRSGLRFLLGGVSDSGSVELQVVSRDNADGRENHGNPEYSAVNVGTFGNEMHERSSDEVERLPLVGHLRDGFsssgsssdrstsVNRENEIVMEEEMSPLVDMSLLGNNRQRASDSLENSLITDRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF
*******SIGSEIIGVMTPVSLCMLLVVLLVYSL*****************ANLVYL**********LEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWALLLALALYDLFAVLAPGGPLKLLVELA*********LVY******************FLL***************************************************************************************************************LITDRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLL**
****ILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQSLSGASDPFRTAANLVYLERPD*SSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEELPALVYEA***************************************************************************************************************************************GIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF
MESSILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSP********SDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEELPALVYEARPTVSENERNRRSGLRFLLGGVSDSGSVELQVVSRDNADGRENHGNPEYSAVNVGTFGNEMHERSSDEVERLPLVGHLRD*****************ENEIVMEEEMSPLVDMSLLGNNRQRASDSLENSLITDRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF
**SSILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQSLSGAS**FRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEELPALVYEARPTVSENE*****G***********************************************************************************************************************DRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooo
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
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MESSILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQSLSGASDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTNLPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEELPALVYEARPTVSENERNRRSGLRFLLGGVSDSGSVELQVVSRDNADGRENHGNPEYSAVNVGTFGNEMHERSSDEVERLPLVGHLRDGFSSSGSSSDRSTSVNRENEIVMEEEMSPLVDMSLLGNNRQRASDSLENSLITDRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query450 2.2.26 [Sep-21-2011]
O64668453 Presenilin-like protein A yes no 0.966 0.960 0.683 1e-161
Q9SIK7397 Presenilin-like protein A no no 0.862 0.977 0.470 1e-88
P52166444 Presenilin sel-12 OS=Caen yes no 0.884 0.896 0.326 3e-50
O02194541 Presenilin homolog OS=Dro yes no 0.904 0.752 0.327 1e-46
P79802467 Presenilin-1 OS=Microcebu N/A no 0.822 0.792 0.334 6e-46
Q5R780467 Presenilin-1 OS=Pongo abe yes no 0.82 0.790 0.324 8e-46
P49768467 Presenilin-1 OS=Homo sapi yes no 0.822 0.792 0.322 2e-45
Q9XT97478 Presenilin-1 OS=Bos tauru yes no 0.848 0.799 0.324 4e-45
P97887468 Presenilin-1 OS=Rattus no yes no 0.806 0.775 0.334 1e-44
Q8HXW5467 Presenilin-1 OS=Macaca fa N/A no 0.822 0.792 0.320 2e-44
>sp|O64668|PSNA_ARATH Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=2 SV=1 Back     alignment and function desciption
 Score =  568 bits (1464), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 320/468 (68%), Positives = 367/468 (78%), Gaps = 33/468 (7%)

Query: 1   MESSILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQSLSGASDP-FRTAANLVYLER 59
           MESSILDS+G EIIGVM PVS+CM LVVLL YSLS +       SDP  R+AANL+Y+E 
Sbjct: 1   MESSILDSLGVEIIGVMAPVSICMFLVVLLTYSLSVT-------SDPQIRSAANLIYIEN 53

Query: 60  PDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGS 119
           P DS+T KLEG++ NA+VFV+LIA VTF+LVLL+YYNFTNFLK+Y+RFSAFFVLGTMGG+
Sbjct: 54  PSDSTTVKLEGSLANAIVFVVLIAAVTFILVLLFYYNFTNFLKHYMRFSAFFVLGTMGGA 113

Query: 120 IFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTN 179
           IFLSIIQ FSIPVD+ TCF+LLFNFTI+G LS+F+GGIPI+LRQ YMV MGI++AAWFT 
Sbjct: 114 IFLSIIQHFSIPVDSITCFILLFNFTILGTLSVFAGGIPIVLRQCYMVVMGIVVAAWFTK 173

Query: 180 LPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEELPALVYEARPTVS--ENER 237
           LPEWTTW +L+ALALYDL AVLAPGGPLKLLVELASSRDEELPA+VYEARPTVS     R
Sbjct: 174 LPEWTTWFILVALALYDLVAVLAPGGPLKLLVELASSRDEELPAMVYEARPTVSSGNQRR 233

Query: 238 NRRSGLRFL--LGGVSDSGSVELQVVSRDNAD--GRENHGNPEYSAVNVGTFGN---EMH 290
           NR S LR L   GGVSDSGSVELQ V   + +  GREN  N +Y+A+ V    N    + 
Sbjct: 234 NRGSSLRALVGGGGVSDSGSVELQAVRNHDVNQLGRENSHNMDYNAIAVRDIDNVDDGIG 293

Query: 291 ERSSDEVERLPLVGHLRDGFSSSGSSSDRSTSVN-----RENEIVMEEEMSPLVDMSLLG 345
             S   +ER PLVG        S S+S+ STSV       + E VM+EEMSPLV++   G
Sbjct: 294 NGSRGGLERSPLVG--------SPSASEHSTSVGTRGNMEDRESVMDEEMSPLVELMGWG 345

Query: 346 NNRQRASDSLENSLITD---RGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLG 402
           +NR+ A    E+  + D   RGI+LGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLG
Sbjct: 346 DNREEARGLEESDNVVDISNRGIKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLG 405

Query: 403 CTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF 450
           CTLILLSV  RALPALPISI LGV+FYFLTRLLMEPFVVG TTNL+MF
Sbjct: 406 CTLILLSVYNRALPALPISIMLGVVFYFLTRLLMEPFVVGVTTNLMMF 453
Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIK7|PSNB_ARATH Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1 Back     alignment and function description
>sp|P52166|PSN_CAEEL Presenilin sel-12 OS=Caenorhabditis elegans GN=sel-12 PE=1 SV=2 Back     alignment and function description
>sp|O02194|PSN_DROME Presenilin homolog OS=Drosophila melanogaster GN=Psn PE=1 SV=2 Back     alignment and function description
>sp|P79802|PSN1_MICMU Presenilin-1 OS=Microcebus murinus GN=PSEN1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R780|PSN1_PONAB Presenilin-1 OS=Pongo abelii GN=PSEN1 PE=2 SV=1 Back     alignment and function description
>sp|P49768|PSN1_HUMAN Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XT97|PSN1_BOVIN Presenilin-1 OS=Bos taurus GN=PSEN1 PE=2 SV=1 Back     alignment and function description
>sp|P97887|PSN1_RAT Presenilin-1 OS=Rattus norvegicus GN=Psen1 PE=1 SV=1 Back     alignment and function description
>sp|Q8HXW5|PSN1_MACFA Presenilin-1 OS=Macaca fascicularis GN=PSEN1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
255580244455 conserved hypothetical protein [Ricinus 1.0 0.989 0.714 1e-176
225439149448 PREDICTED: presenilin-like protein At1g0 0.96 0.964 0.697 1e-160
15223879453 Presenilin-1 [Arabidopsis thaliana] gi|6 0.966 0.960 0.683 1e-159
21593783453 putative presenilin [Arabidopsis thalian 0.966 0.960 0.681 1e-159
449453121456 PREDICTED: presenilin-like protein At1g0 0.986 0.973 0.701 1e-158
297849178452 presenilin family protein [Arabidopsis l 0.966 0.962 0.674 1e-155
388490792423 unknown [Medicago truncatula] 0.922 0.981 0.639 1e-146
357508951 600 Presenilin [Medicago truncatula] gi|3575 0.92 0.69 0.636 1e-145
356571810417 PREDICTED: presenilin-like protein At1g0 0.92 0.992 0.633 1e-142
356504264385 PREDICTED: presenilin-like protein At1g0 0.842 0.984 0.625 1e-137
>gi|255580244|ref|XP_002530952.1| conserved hypothetical protein [Ricinus communis] gi|223529467|gb|EEF31424.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 325/455 (71%), Positives = 380/455 (83%), Gaps = 5/455 (1%)

Query: 1   MESSILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQ-SLSGASDPFRTAANLVYLER 59
           MESSIL+SIG EIIGVM+PVS+CMLLVVL+VYSLSPS   S + ++ P RTAANLVYLE 
Sbjct: 1   MESSILESIGVEIIGVMSPVSICMLLVVLIVYSLSPSNPFSTAASAPPIRTAANLVYLEN 60

Query: 60  PDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGS 119
           P DS+ QKLEG++LNALVFVILIA+VTFLLVLLYYYN T FLKNY+RFSAFFVLG+MGGS
Sbjct: 61  PSDSTAQKLEGSLLNALVFVILIAVVTFLLVLLYYYNCTRFLKNYMRFSAFFVLGSMGGS 120

Query: 120 IFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTN 179
           IFLS+IQ FSIP+D+ TCF++LFNFTIVGVLS+F GGIPI  RQ YMV +GI +AAWFT 
Sbjct: 121 IFLSLIQHFSIPIDSVTCFIMLFNFTIVGVLSVFGGGIPIFFRQGYMVALGIFVAAWFTK 180

Query: 180 LPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEELPALVYEARPTVSENERNR 239
           LPEWTTW +L+ALA+YDL AVLAPGGPLKLLVELA SRDEELPALVYEARPTVS+N  N+
Sbjct: 181 LPEWTTWTVLVALAVYDLVAVLAPGGPLKLLVELAQSRDEELPALVYEARPTVSQNGNNQ 240

Query: 240 RSGLRFLLGGVSDSGSVELQVVSRDNADGR--ENHGNPEYSAVNVGTFGNEMHERSSDEV 297
              L  L+GGVSDSGSVE+Q+VS  N +    EN  N EY+++ V   GN     + D+ 
Sbjct: 241 GRSLDLLVGGVSDSGSVEMQMVSNANRNRNESENRVNSEYTSIPVRNVGNVEGIGNGDDS 300

Query: 298 ERLPLVGHLRDGFSSSGSSSDRSTSV-NRENEIVMEEEMSPLVDMSLLGNNRQRA-SDSL 355
           ER PLVG  R+  SSS  SS+ ST V NRE+++ ++EE SPLVDM  LG+ R++   D+ 
Sbjct: 301 ERFPLVGFSRERCSSSRESSEFSTMVGNRESDVAVDEETSPLVDMLRLGSEREQVRRDAP 360

Query: 356 ENSLITDRGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRAL 415
           E+S++  RGI+LGLGDF+FYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRAL
Sbjct: 361 EDSMLASRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRRAL 420

Query: 416 PALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF 450
           PALPISITLG++FYFLTRLLMEPF+VGT TNL+MF
Sbjct: 421 PALPISITLGIIFYFLTRLLMEPFIVGTATNLMMF 455

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225439149|ref|XP_002267364.1| PREDICTED: presenilin-like protein At1g08700-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|15223879|ref|NP_172346.1| Presenilin-1 [Arabidopsis thaliana] gi|6093852|sp|O64668.1|PSNA_ARATH RecName: Full=Presenilin-like protein At1g08700 gi|9802574|gb|AAF99776.1|AC003981_26 F22O13.18 [Arabidopsis thaliana] gi|16604521|gb|AAL24266.1| At1g08700/F22O13_18 [Arabidopsis thaliana] gi|111074460|gb|ABH04603.1| At1g08700 [Arabidopsis thaliana] gi|332190215|gb|AEE28336.1| Presenilin-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593783|gb|AAM65750.1| putative presenilin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449453121|ref|XP_004144307.1| PREDICTED: presenilin-like protein At1g08700-like [Cucumis sativus] gi|449488277|ref|XP_004157988.1| PREDICTED: presenilin-like protein At1g08700-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297849178|ref|XP_002892470.1| presenilin family protein [Arabidopsis lyrata subsp. lyrata] gi|297338312|gb|EFH68729.1| presenilin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388490792|gb|AFK33462.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357508951|ref|XP_003624764.1| Presenilin [Medicago truncatula] gi|357508963|ref|XP_003624770.1| Presenilin [Medicago truncatula] gi|355499779|gb|AES80982.1| Presenilin [Medicago truncatula] gi|355499785|gb|AES80988.1| Presenilin [Medicago truncatula] Back     alignment and taxonomy information
>gi|356571810|ref|XP_003554065.1| PREDICTED: presenilin-like protein At1g08700-like [Glycine max] Back     alignment and taxonomy information
>gi|356504264|ref|XP_003520917.1| PREDICTED: presenilin-like protein At1g08700-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
TAIR|locus:2025640453 PS1 "AT1G08700" [Arabidopsis t 0.975 0.969 0.616 9.1e-132
TAIR|locus:2052080397 PS2 "AT2G29900" [Arabidopsis t 0.64 0.725 0.383 1.3e-82
DICTYBASE|DDB_G0291352622 psenA "presenilin family prote 0.444 0.321 0.273 9.6e-42
FB|FBgn0019947541 Psn "Presenilin" [Drosophila m 0.813 0.676 0.312 7.5e-41
ZFIN|ZDB-GENE-000330-9441 psen2 "presenilin 2" [Danio re 0.202 0.206 0.569 3e-40
UNIPROTKB|O12976433 psen1 "Presenilin-1" [Xenopus 0.397 0.413 0.315 3.8e-40
UNIPROTKB|E7ES96375 PSEN1 "Presenilin-1" [Homo sap 0.175 0.210 0.585 5.2e-40
UNIPROTKB|P79802467 PSEN1 "Presenilin-1" [Microceb 0.26 0.250 0.454 2.5e-39
UNIPROTKB|Q5R780467 PSEN1 "Presenilin-1" [Pongo ab 0.175 0.169 0.585 4.2e-39
UNIPROTKB|P49768467 PSEN1 "Presenilin-1" [Homo sap 0.175 0.169 0.585 4.2e-39
TAIR|locus:2025640 PS1 "AT1G08700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 286/464 (61%), Positives = 327/464 (70%)

Query:     1 MESSILDSIGSEIIGVMTPXXXXXXXXXXXXXXXXXXEQSLSGASDP-FRTAANLVYLER 59
             MESSILDS+G EIIGVM P                    SLS  SDP  R+AANL+Y+E 
Sbjct:     1 MESSILDSLGVEIIGVMAPVSICMFLVVLLTY-------SLSVTSDPQIRSAANLIYIEN 53

Query:    60 PDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGX 119
             P DS+T KLEG++ NA+VFV+LIA VTF+LVLL+YYNFTNFLK+Y+RFSAFFVLGTMGG 
Sbjct:    54 PSDSTTVKLEGSLANAIVFVVLIAAVTFILVLLFYYNFTNFLKHYMRFSAFFVLGTMGGA 113

Query:   120 XXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTN 179
                        PVD+ TCF+LLFNFTI+G LS+F+GGIPI+LRQ YMV MGI++AAWFT 
Sbjct:   114 IFLSIIQHFSIPVDSITCFILLFNFTILGTLSVFAGGIPIVLRQCYMVVMGIVVAAWFTK 173

Query:   180 LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASSRDEELPALVYEARPTVSE-NER- 237
             LPEWTTW                PGGPLKLLVELASSRDEELPA+VYEARPTVS  N+R 
Sbjct:   174 LPEWTTWFILVALALYDLVAVLAPGGPLKLLVELASSRDEELPAMVYEARPTVSSGNQRR 233

Query:   238 NRRSGLRFLLGG--VSDSGSVELQVV-SRD-NADGRENHGNPEYSAVNVGTFGNE---MH 290
             NR S LR L+GG  VSDSGSVELQ V + D N  GREN  N +Y+A+ V    N    + 
Sbjct:   234 NRGSSLRALVGGGGVSDSGSVELQAVRNHDVNQLGRENSHNMDYNAIAVRDIDNVDDGIG 293

Query:   291 ERSSDEVERLPLVGHLRDGFXXXXXXXXXXXXVNREN-EIVMEEEMSPLVDMSLLGNNRQ 349
               S   +ER PLVG                   N E+ E VM+EEMSPLV++   G+NR+
Sbjct:   294 NGSRGGLERSPLVGSP----SASEHSTSVGTRGNMEDRESVMDEEMSPLVELMGWGDNRE 349

Query:   350 RASDSLENSLITD---RGIRLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLI 406
              A    E+  + D   RGI+LGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLI
Sbjct:   350 EARGLEESDNVVDISNRGIKLGLGDFIFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLI 409

Query:   407 LLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF 450
             LLSV  RALPALPISI LGV+FYFLTRLLMEPFVVG TTNL+MF
Sbjct:   410 LLSVYNRALPALPISIMLGVVFYFLTRLLMEPFVVGVTTNLMMF 453
GO:0004175 "endopeptidase activity" evidence=IBA
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005887 "integral to plasma membrane" evidence=IBA
GO:0008152 "metabolic process" evidence=IBA
GO:0016020 "membrane" evidence=ISS
GO:0035556 "intracellular signal transduction" evidence=ISS
GO:0019722 "calcium-mediated signaling" evidence=RCA
TAIR|locus:2052080 PS2 "AT2G29900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291352 psenA "presenilin family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0019947 Psn "Presenilin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000330-9 psen2 "presenilin 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O12976 psen1 "Presenilin-1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E7ES96 PSEN1 "Presenilin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P79802 PSEN1 "Presenilin-1" [Microcebus murinus (taxid:30608)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R780 PSEN1 "Presenilin-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|P49768 PSEN1 "Presenilin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P52166PSN_CAEELNo assigned EC number0.32670.88440.8963yesno
Q9W6T7PSN1_DANRE3, ., 4, ., 2, 3, ., -0.31500.82880.8179yesno
O64668PSNA_ARATHNo assigned EC number0.68370.96660.9602yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G08700
presenilin family protein; Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation. ; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors (By similarity) (453 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G08620
transcription factor; transcription factor; FUNCTIONS IN- transcription factor activity; INVOLV [...] (1209 aa)
      • 0.877
AT4G01260
transcription regulator; transcription regulator; FUNCTIONS IN- transcription regulator activit [...] (325 aa)
      • 0.867
AT2G47630
esterase/lipase/thioesterase family protein; esterase/lipase/thioesterase family protein; FUNCT [...] (351 aa)
      • 0.867
AT2G19240
RabGAP/TBC domain-containing protein; RabGAP/TBC domain-containing protein; FUNCTIONS IN- RAB G [...] (840 aa)
      • 0.867
FAC1
FAC1 (EMBRYONIC FACTOR1); AMP deaminase; Encodes a protein with in vitro AMP deaminase activity [...] (839 aa)
      • 0.790
AT2G32750
exostosin family protein; exostosin family protein; FUNCTIONS IN- catalytic activity; INVOLVED [...] (509 aa)
      • 0.784
AT2G40970
myb family transcription factor; myb family transcription factor; FUNCTIONS IN- transcription f [...] (248 aa)
      • 0.679
AT3G22790
kinase interacting family protein; kinase interacting family protein; FUNCTIONS IN- molecular_f [...] (1694 aa)
      • 0.409
SETH1
SETH1; phosphatidylinositol N-acetylglucosaminyltransferase/ transferase; Encodes a putative ph [...] (303 aa)
      • 0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
pfam01080403 pfam01080, Presenilin, Presenilin 3e-75
smart00730249 smart00730, PSN, Presenilin, signal peptide peptid 3e-30
smart00730249 smart00730, PSN, Presenilin, signal peptide peptid 1e-20
>gnl|CDD|216289 pfam01080, Presenilin, Presenilin Back     alignment and domain information 
 Score =  240 bits (614), Expect = 3e-75
 Identities = 145/445 (32%), Positives = 227/445 (51%), Gaps = 48/445 (10%)

Query: 1   MESSILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQSLSGASDPFRTAANLVYLERP 60
            E S L      +I +  PVSLCMLLVV  + S+S  EQ             +L+Y    
Sbjct: 1   EEESSLKYGAKHVIWLFVPVSLCMLLVVATIKSVSFYEQ----------NNGSLLYTPFH 50

Query: 61  DDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGG 118
             + T   KL  +++N L+ + ++ ++TFLLV+ Y Y F   +  ++  S+  +L     
Sbjct: 51  SFTPTTGNKLLDSLINTLIMISVLVVMTFLLVVFYKYRFYKIIHGWLILSSLLLLFLFSY 110

Query: 119 SIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFT 178
                + + +++P+D  T F+L++NF +VG++ +   G P+ L+Q Y++    +MA  F 
Sbjct: 111 IYLQEVFKAYNVPMDYPTVFLLIWNFGVVGMMCIHWKG-PLRLQQFYLITNSALMALVFI 169

Query: 179 N-LPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEE-LPALVYEARPTVSENE 236
             LPEWT W +L A++ +DL AVL P GPL++LVE A  R+E   PAL+Y +        
Sbjct: 170 KYLPEWTAWFVLAAISFWDLVAVLTPKGPLRMLVETAQERNEPIFPALIYSS-------- 221

Query: 237 RNRRSGLRFLLGGVSDSGSVELQVVSRDNADGRENHGNPEYSAVNVGTFGNEMHERSSDE 296
               + +   +G   +  +       R  +    +  NP+ +  +  T   E+ E+SS  
Sbjct: 222 ----TVVVLTVGSNQEETNEGTPSTIRRTSKSTRSAANPDSAPTSHSTL--ELPEKSSTP 275

Query: 297 VERLPLVGHLRDGFSSSGSSSDRSTSVNRENEIVMEEEMSPLVDMSLLGNNRQRASDSLE 356
                      D   SS + S    S     E     E   +   SL  N ++   +   
Sbjct: 276 ELS-------DDESDSSETESQSD-SSLAPEED--AAEQPEVQSNSLPSNEKREEEE--- 322

Query: 357 NSLITDRGIRLGLGDFIFYSVLVGRAAMY-DLMTVYACYLAIISGLGCTLILLSVCRRAL 415
                +RG++LGLGDFIFYSVLVG+A+   D  T  AC++AI+ GL  TL+LL+V ++AL
Sbjct: 323 -----ERGVKLGLGDFIFYSVLVGKASATGDWNTTIACFVAILIGLCLTLLLLAVFKKAL 377

Query: 416 PALPISITLGVLFYFLTRLLMEPFV 440
           PALPISIT G++FYF T   + PF+
Sbjct: 378 PALPISITFGLIFYFSTMFFVTPFM 402

Mutations in presenilin-1 are a major cause of early onset Alzheimer's disease. It has been found that presenilin-1 binds to beta-catenin in-vivo. This family also contains SPE proteins from C.elegans. Length = 403
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family Back     alignment and domain information
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 450
KOG2736406 consensus Presenilin [Signal transduction mechanis 100.0
PF01080403 Presenilin: Presenilin Alzheimer disease; InterPro 100.0
smart00730249 PSN Presenilin, signal peptide peptidase, family. 100.0
PF06550283 DUF1119: Protein of unknown function (DUF1119); In 98.51
PF04258298 Peptidase_A22B: Signal peptide peptidase; InterPro 94.17
KOG2442541 consensus Uncharacterized conserved protein, conta 80.22
>KOG2736 consensus Presenilin [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-134  Score=1009.48  Aligned_cols=396  Identities=42%  Similarity=0.707  Sum_probs=311.9

Q ss_pred             CchhhHHHhhhhhhhhhhhhHHHHHHHHHHHhhccCccccCCCCCCccccceeEeecc--CCCCchhhHHHHHHHHHHHH
Q 013051            1 MESSILDSIGSEIIGVMTPVSLCMLLVVLLVYSLSPSEQSLSGASDPFRTAANLVYLE--RPDDSSTQKLEGAVLNALVF   78 (450)
Q Consensus         1 ~~~~~l~~~g~~vi~l~~PVslcM~~Vv~~v~~l~~~~~~~~~~~~~~~~~~~lvY~~--~~~ds~g~k~~~sl~Nali~   78 (450)
                      ||++.|+..|+|+|++|+||++||++||++++++++|++      .+.+   +++|++  +++|++|+|+++|++|++++
T Consensus         6 ~e~s~L~y~~~~vi~lf~PVslCM~~Vv~~i~~~~~~s~------~~~~---~~~y~pf~e~t~s~~~k~l~sl~N~li~   76 (406)
T KOG2736|consen    6 MEESELKYGAKHVIGLFVPVSLCMLVVVATIKSVSFYSS------EQGR---QLIYTPFTEDTDSTGQKLLDSLLNALIM   76 (406)
T ss_pred             chhhhhhccceEEEEEehhHHHHHHHHHHhheecceeec------ccch---heeecccccCCccHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999863      2222   566773  57899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhchHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCcchhhHHHHhhhhhhheeeeeeecCcc
Q 013051           79 VILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGSIFLSIIQQFSIPVDAFTCFVLLFNFTIVGVLSLFSGGIP  158 (450)
Q Consensus        79 v~vI~vmTf~lVlLYkyrc~k~i~gwL~~Ss~~lL~~~g~~~~~~vl~~~nip~D~iT~~~~l~NfgvvG~i~If~~k~P  158 (450)
                      |++|++|||+||+||||||||+||+||++||+++||+||++|+++++++||+|+||+|+++++||||++||+|||| |+|
T Consensus        77 i~viv~~Tfllv~ly~~rfyk~ik~wl~~Ss~llLf~~s~~~l~~v~~~~~ip~dy~T~~lll~nfgvvGm~~ihw-kgp  155 (406)
T KOG2736|consen   77 ISVIVVMTFLLVVLYKYRFYKFIKAWLILSSLLLLFLFSGIYLGEVFKTYNVPVDYITFLLLLWNFGVVGMYSIHW-KGP  155 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeeeeeccccceEEEEEe-CCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998 899


Q ss_pred             hhhHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhhcCCCC-CeeeecccCcccccc
Q 013051          159 ILLRQAYMVCMGIIMAAWFTN-LPEWTTWALLLALALYDLFAVLAPGGPLKLLVELASSRDEEL-PALVYEARPTVSENE  236 (450)
Q Consensus       159 l~lqQ~YLI~iSalmA~~f~~-LPeWTtW~lL~~iaiyDL~AVL~P~GPLr~LVE~AqeRne~I-PALiYss~~~~~~~~  236 (450)
                      ++|||+|||++|+|||++|+| |||||||++|++|++|||+||||||||||+||||||||||++ |||||||++++...+
T Consensus       156 l~L~Q~YlI~~~aLmAl~fik~LPeWTtW~iL~ais~~DLvAVL~P~GPLr~LVEtA~~R~e~~fPAliYss~~v~~~~~  235 (406)
T KOG2736|consen  156 LRLQQAYLIMISALMALFFIKYLPEWTTWFILVAISVYDLVAVLAPKGPLRMLVETAQERNEPIFPALIYSSRMVVLVSE  235 (406)
T ss_pred             eeehhHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCcccchhheeecceEEeccc
Confidence            999999999999999999997 999999999999999999999999999999999999999988 999999999886332


Q ss_pred             ccccccccccccccCCCCcchhhhccccCCCCCCCCCCCCCCcccccccCCcccccCccccccccccccccCCCCCCCCC
Q 013051          237 RNRRSGLRFLLGGVSDSGSVELQVVSRDNADGRENHGNPEYSAVNVGTFGNEMHERSSDEVERLPLVGHLRDGFSSSGSS  316 (450)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  316 (450)
                      ...++..+.-+.+.+...+.+.++..+++...++         +       +.+.......+++|.....+++  +.++.
T Consensus       236 s~~~~~~~~~~~~~~s~~N~~~~~~~~~~s~~~p---------d-------~~~~s~~~~~~~~P~~~~~~~s--~~~~~  297 (406)
T KOG2736|consen  236 SVIRRTVRQTIEPRESQNNAEYNEIRVRDSAAEP---------D-------SVGHSPRVEAERSPLILKPKNS--TRASV  297 (406)
T ss_pred             cccchhhhccCcCccccCchhhhhhhhcccccCC---------c-------cccccccccCCCCCcccCCCCC--ccccc
Confidence            2111111100000000000000000000000000         0       0000011122333332211100  00000


Q ss_pred             CCCccccccchhhhhhhccchhhhccccCCCccccccccccccccCCceeeccchhhHHHHHhhhhhhc-ChhHHHHHHH
Q 013051          317 SDRSTSVNRENEIVMEEEMSPLVDMSLLGNNRQRASDSLENSLITDRGIRLGLGDFIFYSVLVGRAAMY-DLMTVYACYL  395 (450)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~e~~~~~~~~~gIKLGLGDFIFYSVLVGrAA~~-d~~t~~aCfv  395 (450)
                               +.     ++.+++.+.-         ..+   +++|+|||||||||||||||||||||+| |||||+||||
T Consensus       298 ---------~~-----~~~~~~~~~~---------~~~---~~~e~r~ikLGlGDFIFYSvLvGkAa~~~d~~TviAC~v  351 (406)
T KOG2736|consen  298 ---------QG-----LSSSTLEETV---------GTG---EDNEERGIKLGLGDFIFYSVLVGKAAAYGDLNTVIACFV  351 (406)
T ss_pred             ---------cc-----CCccchhhhc---------ccc---ccccccceeeccCceEEEEeeccchhhcCChHHHHHHHH
Confidence                     00     0000000000         000   2368999999999999999999999998 5999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHhhhhHhhhHHhhhhhcccC
Q 013051          396 AIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLMEPFVVGTTTNLLMF  450 (450)
Q Consensus       396 AIL~GL~~TLlLLav~~kALPALPISI~lGliFYF~T~~~v~PF~~~~s~~l~~f  450 (450)
                      |||+|||+||+||++||||||||||||+||++|||+||++++||+++|++|++||
T Consensus       352 aIL~GL~~TL~llsv~~kALPALPisI~~G~iFYF~t~~l~epF~~~~ss~~~~~  406 (406)
T KOG2736|consen  352 AILIGLCLTLLLLSVFKKALPALPISITFGLIFYFSTRLLVEPFVDQLSSNLVMI  406 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcCCchHHHHHHHHHHHHHHHHHHHHHHhhhceeeC
Confidence            9999999999999999999999999999999999999999999999999999997

>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>smart00730 PSN Presenilin, signal peptide peptidase, family Back     alignment and domain information
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function Back     alignment and domain information
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
2kr6_A176 Solution Structure Of Presenilin-1 Ctf Subunit Leng 1e-16
>pdb|2KR6|A Chain A, Solution Structure Of Presenilin-1 Ctf Subunit Length = 176 Back     alignment and structure 
Iteration: 1

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 65/82 (79%), Gaps = 3/82 (3%)
Query: 362 DRGIRLGLGDFIFYSVLVGRA---AMYDLMTVYACYLAIISGLGCTLILLSVCRRALPAL 418
           +RG++LGLGDFIFYSVLVG+A   A  D  T  AC++AI+ GL  TL+LL++ ++ALPAL
Sbjct: 85  ERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL 144
Query: 419 PISITLGVLFYFLTRLLMEPFV 440
           PISIT G++FYF T  L++PF+
Sbjct: 145 PISITFGLVFYFATDYLVQPFM 166
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
2kr6_A176 Presenilin-1; protease, alternative splicing, alzh 1e-35
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 176 Back     alignment and structure
 Score =  129 bits (324), Expect = 1e-35
 Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 4/142 (2%)

Query: 311 SSSGSSSDRSTSVNRENEIVMEEEMSPLVDMSLLGNNRQRASDSLENSLITD-RGIRLGL 369
           S    + +     + E E   +  + P           Q  S S+      + RG++LGL
Sbjct: 33  SQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAVQELSSSILAGEDPEERGVKLGL 92

Query: 370 GDFIFYSVLVGRAA---MYDLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGV 426
           GDFIFYSVLVG+A+     D  T  AC++AI+ GL  TL+LL++ ++ALPALPISIT G+
Sbjct: 93  GDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPALPISITFGL 152

Query: 427 LFYFLTRLLMEPFVVGTTTNLL 448
           +FYF T  L++PF+     +  
Sbjct: 153 VFYFATDYLVQPFMDQLAFHQF 174

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
2kr6_A176 Presenilin-1; protease, alternative splicing, alzh 100.0
4hyg_A301 Putative uncharacterized protein; protease, membra 98.69
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.6e-42  Score=316.95  Aligned_cols=91  Identities=52%  Similarity=0.922  Sum_probs=87.6

Q ss_pred             ccCCceeeccchhhHHHHHhhhhh--hc-ChhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHhhhhH
Q 013051          360 ITDRGIRLGLGDFIFYSVLVGRAA--MY-DLMTVYACYLAIISGLGCTLILLSVCRRALPALPISITLGVLFYFLTRLLM  436 (450)
Q Consensus       360 ~~~~gIKLGLGDFIFYSVLVGrAA--~~-d~~t~~aCfvAIL~GL~~TLlLLav~~kALPALPISI~lGliFYF~T~~~v  436 (450)
                      ++++||||||||||||||||||||  +| ||+|+++||+|||+|||+||++|++||||||||||||+||++|||+|++++
T Consensus        83 ~~~~gikLGLGDFIFYSvLVgkAa~~~~~d~~t~~ac~vaIL~GL~~TL~lLa~~~~aLPALPiSI~lG~~fyf~t~~~v  162 (176)
T 2kr6_A           83 PEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPALPISITFGLVFYFATDYLV  162 (176)
T ss_dssp             CCSSCCSSCTTTHHHHHHHHHHHHHHSCCTTTTHHHHHHHHHHHHHHHHHHHHHHTCSCSSSSSCCCCHHHHHHHHTTTT
T ss_pred             cccccccccccCeeehHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999  74 999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhhhhhcccC
Q 013051          437 EPFVVGTTTNLLMF  450 (450)
Q Consensus       437 ~PF~~~~s~~l~~f  450 (450)
                      +||+++++.|.+++
T Consensus       163 ~pf~~~l~~~~~~~  176 (176)
T 2kr6_A          163 QPFMDQLAFHQFYI  176 (176)
T ss_dssp             CCGGGTSSCSCCCC
T ss_pred             HHHHHHHHhceeeC
Confidence            99999999998763
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00