Citrus Sinensis ID: 013068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFDSLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHcccccccEEEEEccccccEEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEcccEEEEEEEccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccEEEEEEEccccHHHHHHHHHHccccEEEEEEccccccEEEEEEEEEEEcccccHHHHHHHHHHcccEEEEEcccEEEEEEccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEcccccccccccHHHHHHccHHHEEcccccccccccEccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEcccHHHHHHHHHHHHHHHcHEEEEcccccccHHHHHEEEEEcccHHHHHHHHHHHHHHHcEEEEccccEEEEEEEccHHHHHHHHHHHcHcccEEEEEccEEEEEEccccccHHHHcccccccccHHHHccHHcccccccccccccccccccccccEEEEcccccccccccccccEEEEccccccccccEEEEEEEccccHHHHHHHHHHHHccccEcEEEEccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHEEEEEccccccHHHHHEEEEEcccHHHHHHHHHHHHHHHcEEEEccccEEEEEEEccHHHHHHHHHHc
Coil and Loop (DISEMBL)
maatmtpyqklnlshcfitkscdfvlfwrppsqgrtsfsssaevssKKLQLVTAsgstsnnalpvsqsvppitaskvkrhtisvfvgdesgiINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKvedisnephVERELMLIKLngdtstwpeIMWLVDIFRAKVvdisehaltievtgdpgkMVAVQRNLSKFGIKELARTGKIALrreklgdtapfwnfsaasypdleekkrtgifipetnqslngnanvdtssrgdvypvepyddfsanqvldahwgilydedpsglrshtlsmlvnntpgvlNIVTGVISrrgyniqslavgpaekeglscittvvpgtdesIGKLVQLLHKLIDlhevqdithlpfAERELILIKIAVNTAARRDVLDIAKIFRAravdvsdhtitlevnpinnicfffdsls
Flexible Loop (DISEMBL)
maatmtpyqklnlshCFITKSCDFVLFWRPPSQGRTsfsssaevsSKKLQLVTASgstsnnalpvsqsvppitaskvKRHTIsvfvgdesgiiNRIAGVFARRGYNIESlavglnvdKALFTIVVSGTERVLRQVVEQLNKLVnvikvedisnephvERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAltievtgdpgkmVAVQRNLSKFGIKELARTGKIAlrreklgdtapfwnfsaasypdleEKKRTGIFipetnqslngnanvdTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLavgpaekegLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAvntaarrdVLDIAKIFRaravdvsdhtitlevnpinnicfffdsls
Low Complexity Region (SEG)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTsfsssaevssKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFDSLS
Disordered region (IsUnstruct)
*******YQKLNLSHCFITKSCDFVLFWR***********************************************VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLE***RTGIFI*******************DVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFD***
Disordered Region (DISOPRED)
********************************************************************************TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALR*********************************************************YDDFSANQVLDAHWGI*Y*****GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFDSLS
Disordered Region (DISEMBL)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQ*****************************LPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFDSLS
Disordered Region (DISPRO)
****MTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSS*KLQLVTA******NALP********TASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKR**********************RGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFDSLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAATMTPYQKLNLSHCFITKSCDFVLFWRPPSQGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFDSLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q9FFF4	477	Acetolactate synthase sma	yes	no	0.893	0.842	0.712	1e-167
Q93YZ7	491	Acetolactate synthase sma	no	no	0.822	0.753	0.697	1e-156
Q9SMC2	449	Acetolactate synthase sma	N/A	no	0.762	0.763	0.765	1e-150
Q55141	172	Acetolactate synthase sma	N/A	no	0.342	0.895	0.589	3e-45
Q9TLY1	172	Acetolactate synthase sma	N/A	no	0.34	0.889	0.567	9e-45
O78451	169	Acetolactate synthase sma	yes	no	0.337	0.899	0.594	6e-44
Q1XDQ7	174	Acetolactate synthase sma	N/A	no	0.373	0.965	0.523	5e-42
Q9MS98	181	Acetolactate synthase sma	N/A	no	0.34	0.845	0.541	5e-41
P51230	174	Acetolactate synthase sma	N/A	no	0.364	0.942	0.505	5e-41
P65161	168	Putative acetolactate syn	yes	no	0.342	0.916	0.467	3e-34

>sp|Q9FFF4|ILVH1_ARATH Acetolactate synthase small subunit 1, chloroplastic OS=Arabidopsis thaliana GN=VAT1 PE=1 SV=1

 Score =  587 bits (1514), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/407 (71%), Positives = 339/407 (83%), Gaps = 5/407 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLEV
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEV 429

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids but not in herbicide tolerance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93YZ7|ILVH2_ARATH Acetolactate synthase small subunit 2, chloroplastic OS=Arabidopsis thaliana GN=At2g31810 PE=1 SV=1

 Score =  552 bits (1422), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/390 (69%), Positives = 320/390 (82%), Gaps = 20/390 (5%)

Query: 56  GSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN 115
           G  S+ +   + S  P   SKV++HTISVFVGDESG+INRIAGVFARRGYNIESLAVGLN
Sbjct: 65  GKISDASFSEASSATP--KSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN 122

Query: 116 VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPE 175
            DKALFTIVV GTERVL+QV+EQL KLVNV+KVEDIS+EP VERELML+K+N    +  E
Sbjct: 123 RDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPESRAE 182

Query: 176 IMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
           IMWLVD FRA+VVDI+EHALTIEVTGDPGKM+AV+RNL KF I+E+ RTGKIALRREK+G
Sbjct: 183 IMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRREKMG 242

Query: 236 DTAPFWNFSAASYPDLEEK--------KRTGIFIPETNQSLNGNANVDTSSRGDVYPVEP 287
            TAPFW FSAASYPDL+E+         + G  +P+           +TS+ GDVYPVEP
Sbjct: 243 ATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQK----------ETSAGGDVYPVEP 292

Query: 288 YDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAV 347
           + D   +++LDAHWG+L DED SGLRSHTLS+LVN+ PGVLNIVTGV +RRGYNIQSLAV
Sbjct: 293 FFDPKVHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAV 352

Query: 348 GPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNT 407
           G AE +G+S ITTV+P TDES+ KLVQ L+KL+D+HEV D+THLPF+EREL+LIKIAVN 
Sbjct: 353 GHAETKGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVNA 412

Query: 408 AARRDVLDIAKIFRARAVDVSDHTITLEVN 437
           AARRDVLDIA IFRA+AVDVSDHTITL++ 
Sbjct: 413 AARRDVLDIASIFRAKAVDVSDHTITLQLT 442

Regulatory subunit of acetohydroxy-acid synthase. Involved in the feed-back inhibition by branched-chain amino acids. Contains 2 repeats, each of them being able to activate partially the catalytic subunit. The enzyme reconstituted with the first repeat is inhibited by leucine, but not by valine or isoleucine and the enzyme reconstituted with the second repeat is not inhibited by any branched-chain amino acid.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMC2|ILVH_NICPL Acetolactate synthase small subunit 1, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1

 Score =  533 bits (1373), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/345 (76%), Positives = 299/345 (86%), Gaps = 2/345 (0%)

Query: 92  IINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI 151
           +INRIAGVFARRGYNIESLAVGLN DKALFTIVVSGTERVL+QV+EQL KLVNVIKVED+
Sbjct: 37  MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVMEQLQKLVNVIKVEDL 96

Query: 152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQR 211
           S EP VERELMLIK++ D     E+MWLVD+FRAK+VDIS+ +LTIEVTGDPGKMVAVQR
Sbjct: 97  SKEPQVERELMLIKISADPKYRAEVMWLVDVFRAKIVDISDQSLTIEVTGDPGKMVAVQR 156

Query: 212 NLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGN 271
           NLSKFGI+E+ARTGKIALRREK+G++APFW FSAASYPDLE     G       ++ NG 
Sbjct: 157 NLSKFGIREIARTGKIALRREKMGESAPFWRFSAASYPDLEGAMSAGTISRTIKRTPNGE 216

Query: 272 ANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIV 331
           +   + + GDVYPVE  D+   +QVLDAHWG+L DED SGLRSHTLSMLVN+TPGVLNIV
Sbjct: 217 SM--SMAEGDVYPVETDDNSGVSQVLDAHWGVLNDEDTSGLRSHTLSMLVNDTPGVLNIV 274

Query: 332 TGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL 391
           TGV +RRGYNIQSLAVG AE EGLS ITTVVPGTDES+ KLVQ L+KL+D+HEV+DITHL
Sbjct: 275 TGVFARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESVSKLVQQLYKLVDIHEVRDITHL 334

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           PFAEREL+LIKIAVN AARR+VLDIA IFRA+AVDVSDHTITLE+
Sbjct: 335 PFAERELMLIKIAVNAAARRNVLDIASIFRAKAVDVSDHTITLEL 379

Regulatory subunit of acetohydroxy-acid synthase. Probably involved in feedback inhibition by branched-chain amino acids. Not involved in herbicide tolerance.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|Q55141|ILVH_SYNY3 Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ilvH PE=3 SV=2

 Score =  183 bits (464), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 120/156 (76%), Gaps = 2/156 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G++ RIAG+FARRG+NIESLAVG     D +  T+VV G E  + Q+ 
Sbjct: 2   KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVNVIKV+DI+  P VERELML+K++ +     E++ L  +FRA++VDISE  +T
Sbjct: 62  KQLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEVIELAQVFRARIVDISEDTVT 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           IEV GDPGKMVA+ + L+KFGIKE+ARTGKIAL RE
Sbjct: 122 IEVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRE 157

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9TLY1|ILVH_CYACA Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1

 Score =  181 bits (460), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 88/155 (56%), Positives = 123/155 (79%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           ++T+SV V DE+G++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+ 
Sbjct: 2   KYTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++KV++I+  P VEREL+L+K+N  TS+ PEI+ ++ +FRAKVVD+SE+ L 
Sbjct: 62  KQLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEILSILQVFRAKVVDLSENLLV 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           +E+TGDPGK+ A+Q+ L KFGI E+ARTGKIAL R
Sbjct: 122 LELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTR 156

Cyanidium caldarium (taxid: 2771)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|O78451|ILVH_GUITH Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1

 Score =  178 bits (452), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 120/158 (75%), Gaps = 6/158 (3%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDKALFTIVVSGTERVLRQ 134
           +HT+SV V DESG++ RIAG+FARRG+NIESLAVG    L + +   T+VV   ER + Q
Sbjct: 2   KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISR--ITMVVPSDERTIEQ 59

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           + +QL KLVN++KVEDI+N P VERELMLIKL   T    E + +++IFRAKVVD+SE  
Sbjct: 60  LTKQLYKLVNILKVEDITNLPTVERELMLIKLRVSTFERTEALDIINIFRAKVVDLSEDF 119

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           L IEVTGDPGK+VA+++ LSKF I E+ RTGKI+L RE
Sbjct: 120 LIIEVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRE 157

Guillardia theta (taxid: 55529)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q1XDQ7|ILVH_PORYE Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1

 Score =  172 bits (436), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 2/170 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ 
Sbjct: 2   KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++ V+D++N P VERELMLIK+  ++ T  E + +V IFRAK+VDI+E  L 
Sbjct: 62  KQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTEALEIVRIFRAKIVDIAEDLLI 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAA 246
           IEVTGDPGK+VA+++ L+KFGI E+ARTGKI L R    +T    N   A
Sbjct: 122 IEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVRTSKINTEYLKNRVVA 171

Porphyra yezoensis (taxid: 2788)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9MS98|ILVH_GALSU Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1

 Score =  169 bits (427), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 120/157 (76%), Gaps = 4/157 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA---LFTIVVSGTERVLRQV 135
           +HT+SV V DESG++ RI+G+FARRG+NI+SLAVG   +KA     T+V+ G  R++ Q+
Sbjct: 2   KHTLSVLVEDESGVLTRISGLFARRGFNIDSLAVG-PAEKAGISRITMVIRGDNRIIEQI 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            + L KLVNV+K++DI+N P VERELMLIK+    +   EI+ + +IFRA+VVD+SE  +
Sbjct: 61  TKHLYKLVNVLKIQDITNIPCVERELMLIKVKTGENKRNEILEIANIFRARVVDLSESFI 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
            +E+TGDPGK+ A+++ L K+GI E+ARTGKIAL RE
Sbjct: 121 ILEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRE 157

Galdieria sulphuraria (taxid: 130081)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P51230|ILVH_PORPU Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1

 Score =  169 bits (427), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 123/172 (71%), Gaps = 8/172 (4%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVV 136
           +HT+SV V DE+G+++RI+G+FARRG+NI SLAVG    +  +  T+VV G  R + Q+ 
Sbjct: 2   KHTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL KLVN++ V+D++N P VERELMLIK+  ++    E + +V IFRA VVDI+E  + 
Sbjct: 62  KQLYKLVNILNVQDVTNIPSVERELMLIKIQVNSQNRIEALEIVKIFRANVVDIAEDLII 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR------EKLGDTAPFWN 242
           +EVTGDPGK+VA+++ L+KFGI E+ARTGKI+L R      E L D    +N
Sbjct: 122 VEVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVRTSKINTEYLKDKVVAYN 173

Porphyra purpurea (taxid: 2787)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

>sp|P65161|ILVH_MYCTU Putative acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=1 SV=1

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 110/156 (70%), Gaps = 2/156 (1%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQV 135
           K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+
Sbjct: 4   KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +++  V++FRA V+D+S  +L
Sbjct: 64  TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESL 123

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           T+E TG+ GK+ A+ R L  FGI+E+A++G ++L R
Sbjct: 124 TVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
359495876	476	PREDICTED: uncharacterized protein LOC10	0.815	0.771	0.831	1e-172
449442655	480	PREDICTED: uncharacterized protein LOC10	0.9	0.843	0.719	1e-169
224098798	414	predicted protein [Populus trichocarpa]	0.802	0.871	0.809	1e-168
224112371	414	predicted protein [Populus trichocarpa]	0.795	0.864	0.801	1e-166
15237321	477	protein valine-tolerant 1 [Arabidopsis t	0.893	0.842	0.712	1e-165
222423112	477	AT5G16290 [Arabidopsis thaliana]	0.893	0.842	0.710	1e-165
297807659	476	hypothetical protein ARALYDRAFT_488480 [	0.893	0.844	0.710	1e-164
225434187	482	PREDICTED: uncharacterized protein LOC10	0.873	0.815	0.728	1e-164
441477737	767	B3-type transcription factor [Ricinus co	0.893	0.524	0.712	1e-163
255577893	493	acetolactate synthase, putative [Ricinus	0.875	0.799	0.728	1e-163

>gi|359495876|ref|XP_002266924.2| PREDICTED: uncharacterized protein LOC100256605 [Vitis vinifera] gi|296083398|emb|CBI23353.3| unnamed protein product [Vitis vinifera]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 307/369 (83%), Positives = 325/369 (88%), Gaps = 2/369 (0%)

Query: 68  SVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG 127
           S PPI  SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVVSG
Sbjct: 62  SAPPIQRSKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVSG 121

Query: 128 TERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKV 187
           TE VLRQVVEQLNKLVNV+KV+D+S EP VERELMLIKLN D S   EIMWLVDIFRAK+
Sbjct: 122 TETVLRQVVEQLNKLVNVLKVKDLSREPQVERELMLIKLNADPSKRAEIMWLVDIFRAKI 181

Query: 188 VDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAAS 247
           VDISEH+LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK+G+TAPFW FSAAS
Sbjct: 182 VDISEHSLTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKMGETAPFWRFSAAS 241

Query: 248 YPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDE 307
           YPDLEE       +    + LNGN +  TS  GDVYPVEP++DFS N VLD HWG L DE
Sbjct: 242 YPDLEETIPVNALVRNVKRPLNGNPS--TSPGGDVYPVEPFNDFSVNPVLDPHWGALNDE 299

Query: 308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE 367
           D SGLRSHTLSMLVN+TPGVLNIVTGVISRR YNIQSLAVGPAE EG S ITTVVPGTDE
Sbjct: 300 DSSGLRSHTLSMLVNDTPGVLNIVTGVISRRSYNIQSLAVGPAEMEGRSHITTVVPGTDE 359

Query: 368 SIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDV 427
           SI KLVQ L KLIDLHEV+DITH+PFAEREL+LIKIAVNTAARRDVLDIA IFRA+AVDV
Sbjct: 360 SISKLVQQLQKLIDLHEVRDITHMPFAERELMLIKIAVNTAARRDVLDIASIFRAKAVDV 419

Query: 428 SDHTITLEV 436
           SDHTITLE+
Sbjct: 420 SDHTITLEL 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442655|ref|XP_004139096.1| PREDICTED: uncharacterized protein LOC101208212 [Cucumis sativus]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 302/420 (71%), Positives = 347/420 (82%), Gaps = 15/420 (3%)

Query: 29  RPPSQG---RTSFSSSAEVSSKKLQ---------LVTASGSTSNNALPVSQSVPPITASK 76
           +PP      R  FS+S  V  +++Q         L  +S + ++NA+ V+ S  P   S 
Sbjct: 16  KPPYSALASRHFFSTSLIVKYQEVQKWNRFEFQRLQVSSAAVNDNAVTVTDSSRPSIRST 75

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVV 136
           V RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV+GTE VLRQVV
Sbjct: 76  VMRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVTGTENVLRQVV 135

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           EQLNKLVNVIKVEDIS +P VEREL+L+KLN D+ST  EIMWLVDIFR K+VDISEH++T
Sbjct: 136 EQLNKLVNVIKVEDISRQPQVERELVLMKLNADSSTRAEIMWLVDIFRGKIVDISEHSVT 195

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKR 256
           IEVTGDPGK+VAV+RN SKFGI+ELARTGKIALRREK G+TAPFW FSAASYPDLE+ + 
Sbjct: 196 IEVTGDPGKLVAVERNFSKFGIRELARTGKIALRREKRGETAPFWRFSAASYPDLEDSRP 255

Query: 257 TGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHT 316
              F+ +  QSL G     ++S GDVYPVEPY+ F ++QVLDAHWG+LYDED SG +SHT
Sbjct: 256 INSFVEDAIQSLKGQV---STSTGDVYPVEPYESFHSDQVLDAHWGVLYDEDSSGHQSHT 312

Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           LSMLVN+ PGVLN+VTG+ISRRGYNIQSLAVG AE+EGLS ITTV+PGTDESIGKLVQ L
Sbjct: 313 LSMLVNDYPGVLNVVTGIISRRGYNIQSLAVGHAEREGLSRITTVIPGTDESIGKLVQQL 372

Query: 377 HKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           HKLIDLHEV+D+THLPFAEREL+LIKIA N  ARRDVLDIA IFRA+AVDVS HTITL++
Sbjct: 373 HKLIDLHEVRDLTHLPFAERELMLIKIAANATARRDVLDIADIFRAKAVDVSGHTITLQL 432

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098798|ref|XP_002311270.1| predicted protein [Populus trichocarpa] gi|222851090|gb|EEE88637.1| predicted protein [Populus trichocarpa]

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/367 (80%), Positives = 327/367 (89%), Gaps = 6/367 (1%)

Query: 76  KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQV 135
           +++RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GTE+VLRQV
Sbjct: 1   RLQRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNKDKALFTIVVCGTEKVLRQV 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
           VEQLNKLVNVIKV+DIS EP VERELMLIK N D ST  E+MWLVDIFRAK+VDISE++L
Sbjct: 61  VEQLNKLVNVIKVDDISREPQVERELMLIKFNADPSTRAEVMWLVDIFRAKIVDISENSL 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKK 255
           TIEVTGDPGKM A+QRNLSKFGIKELARTGKIALRRE++G+TAPFWNFSAASYPDLE   
Sbjct: 121 TIEVTGDPGKMAAIQRNLSKFGIKELARTGKIALRRERMGETAPFWNFSAASYPDLERVP 180

Query: 256 RTGIFIPETNQSLNGNA------NVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDP 309
                   + +++ GNA      +  +SS+GDVYPVEPYDDF  N VLDAHWG+LYDED 
Sbjct: 181 SGVALARNSTKTVAGNANLSLNGSNSSSSKGDVYPVEPYDDFLMNPVLDAHWGVLYDEDS 240

Query: 310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESI 369
           +GLRSHTLSMLVNN PGVLNIVTGVISRRGYNIQSLAVGPAE+EGLS ITTV+PGTDESI
Sbjct: 241 NGLRSHTLSMLVNNCPGVLNIVTGVISRRGYNIQSLAVGPAEEEGLSRITTVIPGTDESI 300

Query: 370 GKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSD 429
           GKLVQ LHKLIDLHEV+DITH PFAEREL+LIKIA N+AARRDVLDIA+IFRA+AVDVSD
Sbjct: 301 GKLVQQLHKLIDLHEVRDITHSPFAERELMLIKIAANSAARRDVLDIARIFRAKAVDVSD 360

Query: 430 HTITLEV 436
           HTITLE+
Sbjct: 361 HTITLEL 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112371|ref|XP_002316167.1| predicted protein [Populus trichocarpa] gi|222865207|gb|EEF02338.1| predicted protein [Populus trichocarpa]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 295/368 (80%), Positives = 322/368 (87%), Gaps = 10/368 (2%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVV 136
           ++RHTISVFVGDE GIINRIAGVFARRGY+IESLAVGLN DKALFTIVV GTE+VLRQVV
Sbjct: 1   MQRHTISVFVGDEIGIINRIAGVFARRGYSIESLAVGLNKDKALFTIVVCGTEKVLRQVV 60

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           EQLNKLVNVIKVEDIS +P VERELMLIKLN + ST  EIMWLVDIFRAK+VDISEH+LT
Sbjct: 61  EQLNKLVNVIKVEDISRDPQVERELMLIKLNANPSTRAEIMWLVDIFRAKIVDISEHSLT 120

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLE---- 252
           IEVTGDPGKM AVQRNLSKFGIKELARTGKIAL+RE +G+TAPFW FSAASYPDL+    
Sbjct: 121 IEVTGDPGKMAAVQRNLSKFGIKELARTGKIALKRETMGETAPFWGFSAASYPDLDRIPS 180

Query: 253 ----EKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDED 308
               ++  T  F    + SLNG+    +SS+GDVY VEPYDDF ANQVLDAHWG+LYDED
Sbjct: 181 GVALDRNSTNTFAGNGDLSLNGSNT--SSSKGDVYAVEPYDDFLANQVLDAHWGVLYDED 238

Query: 309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES 368
            +GLRSHTLSMLVNN PGVLNI+TGVISRRGYNIQSLAVG AEKEGLS ITTV+PGTDES
Sbjct: 239 SNGLRSHTLSMLVNNCPGVLNILTGVISRRGYNIQSLAVGHAEKEGLSRITTVIPGTDES 298

Query: 369 IGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS 428
           IGKLVQ LHK ID HEV+DITH PFAEREL LIKIA N+AARRDVLDIA+IFRA+AVD S
Sbjct: 299 IGKLVQQLHKSIDFHEVRDITHSPFAERELTLIKIAANSAARRDVLDIARIFRAKAVDFS 358

Query: 429 DHTITLEV 436
           DHTITLE+
Sbjct: 359 DHTITLEL 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237321|ref|NP_197133.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|30685790|ref|NP_850829.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|75271992|sp|Q9FFF4.1|ILVH1_ARATH RecName: Full=Acetolactate synthase small subunit 1, chloroplastic; AltName: Full=Acetohydroxy-acid synthase small subunit; Short=AHAS; Short=ALS; AltName: Full=Protein valine-tolerant 1; Flags: Precursor gi|9759111|dbj|BAB09596.1| acetolactate synthase-like protein [Arabidopsis thaliana] gi|63003744|gb|AAY25401.1| At5g16290 [Arabidopsis thaliana] gi|110742103|dbj|BAE98982.1| acetolactate synthase-like protein [Arabidopsis thaliana] gi|332004889|gb|AED92272.1| protein valine-tolerant 1 [Arabidopsis thaliana] gi|332004890|gb|AED92273.1| protein valine-tolerant 1 [Arabidopsis thaliana]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/407 (71%), Positives = 339/407 (83%), Gaps = 5/407 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLEV
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEV 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423112|dbj|BAH19535.1| AT5G16290 [Arabidopsis thaliana]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 289/407 (71%), Positives = 339/407 (83%), Gaps = 5/407 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGI+E+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIQEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLEV
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEV 429

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807659|ref|XP_002871713.1| hypothetical protein ARALYDRAFT_488480 [Arabidopsis lyrata subsp. lyrata] gi|297317550|gb|EFH47972.1| hypothetical protein ARALYDRAFT_488480 [Arabidopsis lyrata subsp. lyrata]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/408 (71%), Positives = 340/408 (83%), Gaps = 6/408 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QS+ P    +V+RHTISVFVGDE
Sbjct: 25  PAKTPNSLQVTPIIDGRKMRNATVLSAASTDKAITTAQSIAPTACDRVRRHTISVFVGDE 84

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 85  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 144

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SEH+LTIEVTGDPGKMVA+
Sbjct: 145 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEHSLTIEVTGDPGKMVAL 204

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPE-TNQSL 268
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L  +  +   + E T  +L
Sbjct: 205 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVNESSSHETVAEKTKLAL 264

Query: 269 NGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVL 328
            GN N   S  GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVL
Sbjct: 265 TGNGNA--SPGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVL 320

Query: 329 NIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI 388
           N++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+I
Sbjct: 321 NLITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNI 380

Query: 389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           TH+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLEV
Sbjct: 381 THMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEV 428

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434187|ref|XP_002279286.1| PREDICTED: uncharacterized protein LOC100261174 [Vitis vinifera] gi|296084341|emb|CBI24729.3| unnamed protein product [Vitis vinifera]

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 293/402 (72%), Positives = 337/402 (83%), Gaps = 9/402 (2%)

Query: 42  AEVSSKKLQLVTASGSTSNNAL-------PVSQSVPPITASKVKRHTISVFVGDESGIIN 94
           +++ + +L  +  S S++ N +        V+   P    SKV+RHTISVFVGDESG+IN
Sbjct: 33  SKLKNPQLGKLVVSASSAENGVGFNDKTAAVANPAPSAARSKVRRHTISVFVGDESGMIN 92

Query: 95  RIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE 154
           RIAGVFARRGYNI+SLAVGLN DKALFTIVVSGTERVL+QVVEQL+KLVNV+KVEDIS E
Sbjct: 93  RIAGVFARRGYNIDSLAVGLNKDKALFTIVVSGTERVLQQVVEQLHKLVNVLKVEDISTE 152

Query: 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214
           PHVERELMLIK+N +     EIMWLV+IFRAK+VDISEH++TIEVTGDPGKMVAVQRNLS
Sbjct: 153 PHVERELMLIKVNANPQYRAEIMWLVNIFRAKIVDISEHSVTIEVTGDPGKMVAVQRNLS 212

Query: 215 KFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANV 274
           KFGI+E+ARTGKIALRREK+G++APFW FSA+SYPDLE +     F+    ++LN  +  
Sbjct: 213 KFGIREIARTGKIALRREKMGESAPFWRFSASSYPDLEGEIPENTFVETRTKTLNSES-- 270

Query: 275 DTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGV 334
           D S  GDVYPVEP D F  N+VLDAHWG+LYDED SGLRSHTLSM+VNN PGVLN+VTGV
Sbjct: 271 DASVGGDVYPVEPSDGFLFNKVLDAHWGVLYDEDTSGLRSHTLSMVVNNAPGVLNLVTGV 330

Query: 335 ISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA 394
            +RRGYNIQSLAVG AE EGLS ITTVVPGTDESI KLVQ L KLIDLH+V+DITHLPFA
Sbjct: 331 FARRGYNIQSLAVGHAEVEGLSRITTVVPGTDESINKLVQQLKKLIDLHDVRDITHLPFA 390

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           EREL+LIKIAVN AARRDVLDIA IFRA+A+DVSDHTITLE+
Sbjct: 391 ERELMLIKIAVNAAARRDVLDIASIFRAKAIDVSDHTITLEL 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|441477737|dbj|BAM75181.1| B3-type transcription factor [Ricinus communis]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/407 (71%), Positives = 339/407 (83%), Gaps = 5/407 (1%)

Query: 31  PSQGRTSFSSSAEVSSKKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDE 89
           P++   S   +  +  +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDE
Sbjct: 27  PAKTPNSLQVNQIIDGRKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDE 86

Query: 90  SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVE 149
           SGIINRIAGVFARRGYNIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVE
Sbjct: 87  SGIINRIAGVFARRGYNIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVE 146

Query: 150 DISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV 209
           D+S EPHVERELMLIKLN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+
Sbjct: 147 DLSKEPHVERELMLIKLNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVAL 206

Query: 210 QRNLSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLN 269
             NL KFGIKE+ARTGKIALRREK+G+TAPFW FSAASYP L ++        +T  +L 
Sbjct: 207 TTNLEKFGIKEIARTGKIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALT 266

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLN 329
           GN N   SS GDVYPVEPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN
Sbjct: 267 GNGNA--SSGGDVYPVEPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLN 322

Query: 330 IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT 389
           ++TG ISRRGYNIQSLAVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+IT
Sbjct: 323 LITGAISRRGYNIQSLAVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNIT 382

Query: 390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           H+PFAEREL+LIK+A +T+ARRDVLDIA++FRA+A+DVSDHTITLEV
Sbjct: 383 HMPFAERELMLIKVAADTSARRDVLDIAQVFRAKAIDVSDHTITLEV 429

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577893|ref|XP_002529819.1| acetolactate synthase, putative [Ricinus communis] gi|223530696|gb|EEF32568.1| acetolactate synthase, putative [Ricinus communis]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 295/405 (72%), Positives = 336/405 (82%), Gaps = 11/405 (2%)

Query: 33  QGRTSFSSSAEVSSKKLQLVTASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGI 92
           Q R  F  SA   S K   V     +SN ++P +      T SKV+RHTISVFVGDESG+
Sbjct: 53  QPRRKFIVSATADSHKDDTVL----SSNGSVPAAA-----TLSKVRRHTISVFVGDESGM 103

Query: 93  INRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS 152
           INRIAGVFARRGYNIESLAVGLN DKALFTIVVSGTERVL+QVVEQL KLVNV+KVED+S
Sbjct: 104 INRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTERVLQQVVEQLQKLVNVMKVEDLS 163

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
           +EP VERELMLIK+N D S   EIMWLV IFRAK+VDISEH+LTIEVTGDPGKMVAVQRN
Sbjct: 164 SEPQVERELMLIKVNADPSYRAEIMWLVGIFRAKIVDISEHSLTIEVTGDPGKMVAVQRN 223

Query: 213 LSKFGIKELARTGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNA 272
           LSKFGI+E+ARTGKIALRREK+G+ APFW FSAASYPDL E +     +   ++++ G+ 
Sbjct: 224 LSKFGIREIARTGKIALRREKMGECAPFWRFSAASYPDLGEIRSEDALLGSKSRAVLGDD 283

Query: 273 NVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVT 332
             +TS+ GDVYPVE  D F   QVLDAHWG+L +ED +GLRSHTLSMLVN++PGVLNIVT
Sbjct: 284 --ETSAGGDVYPVETSDSFMLTQVLDAHWGVLNEEDTTGLRSHTLSMLVNDSPGVLNIVT 341

Query: 333 GVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP 392
           G+ +RRGYN+QSLAVG +E EGLS ITTVVPGTDESI KLVQ L+KLIDLHEV+D+THLP
Sbjct: 342 GIFARRGYNVQSLAVGHSETEGLSRITTVVPGTDESISKLVQQLYKLIDLHEVRDLTHLP 401

Query: 393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVN 437
           FAEREL+LIKIAVN AARRDVLDIA IFRA+AVDVSDHTITLE+ 
Sbjct: 402 FAERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTITLELT 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2171292	477	VAT1 "VALINE-TOLERANT 1" [Arab	0.857	0.809	0.736	2.7e-148
TAIR|locus:2045248	491	AT2G31810 [Arabidopsis thalian	0.844	0.773	0.703	5.6e-139
TIGR_CMR|CHY_0518	170	CHY_0518 "acetolactate synthas	0.34	0.9	0.574	1.2e-40
UNIPROTKB|P65161	168	ilvH "Putative acetolactate sy	0.351	0.940	0.462	9.5e-34
TIGR_CMR|DET_0832	178	DET_0832 "acetolactate synthas	0.34	0.859	0.470	2.9e-32
TIGR_CMR|GSU_1910	163	GSU_1910 "acetolactate synthas	0.348	0.963	0.433	4.7e-32
TIGR_CMR|CHY_1594	164	CHY_1594 "acetolactate synthas	0.34	0.932	0.419	6.4e-28
TIGR_CMR|SPO_2579	186	SPO_2579 "acetolactate synthas	0.38	0.919	0.397	3.3e-25
TIGR_CMR|CPS_3237	165	CPS_3237 "acetolactate synthas	0.348	0.951	0.378	5.7e-25
UNIPROTKB|P00894	163	ilvH "IlvH" [Escherichia coli	0.335	0.926	0.386	4.8e-24

TAIR|locus:2171292 VAT1 "VALINE-TOLERANT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
 Identities = 288/391 (73%), Positives = 333/391 (85%)

Query:    47 KKLQLVTA-SGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGY 105
             +K++  T  S ++++ A+  +QSV P    +V+RHTISVFVGDESGIINRIAGVFARRGY
Sbjct:    43 RKMRNATVLSAASTDKAITTAQSVAPTACDRVRRHTISVFVGDESGIINRIAGVFARRGY 102

Query:   106 NIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK 165
             NIESLAVGLN DKALFTIVV GT++VL+QVVEQLNKLVNVIKVED+S EPHVERELMLIK
Sbjct:   103 NIESLAVGLNEDKALFTIVVLGTDKVLQQVVEQLNKLVNVIKVEDLSKEPHVERELMLIK 162

Query:   166 LNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTG 225
             LN D ST  EIMWLVDIFRAK+VD SE +LTIEVTGDPGKMVA+  NL KFGIKE+ARTG
Sbjct:   163 LNADPSTRSEIMWLVDIFRAKIVDTSEQSLTIEVTGDPGKMVALTTNLEKFGIKEIARTG 222

Query:   226 KIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPV 285
             KIALRREK+G+TAPFW FSAASYP L ++        +T  +L GN N   SS GDVYPV
Sbjct:   223 KIALRREKMGETAPFWRFSAASYPHLVKESSHETVAEKTKLALTGNGNA--SSGGDVYPV 280

Query:   286 EPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSL 345
             EPY+DF    VLDAHWG++YDED SGLRSHTLS+LV N PGVLN++TG ISRRGYNIQSL
Sbjct:   281 EPYNDFKP--VLDAHWGMVYDEDSSGLRSHTLSLLVANVPGVLNLITGAISRRGYNIQSL 338

Query:   346 AVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAV 405
             AVGPAEKEGLS ITTV+PGTDE+I KLV+ L KLIDL E+Q+ITH+PFAEREL+LIK+A 
Sbjct:   339 AVGPAEKEGLSRITTVIPGTDENIDKLVRQLQKLIDLQEIQNITHMPFAERELMLIKVAA 398

Query:   406 NTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
             +T+ARRDVLDIA++FRA+A+DVSDHTITLEV
Sbjct:   399 DTSARRDVLDIAQVFRAKAIDVSDHTITLEV 429

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0006551 "leucine metabolic process" evidence=IMP

GO:0006573 "valine metabolic process" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2045248 AT2G31810 [Arabidopsis thaliana (taxid:3702)]

 Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
 Identities = 270/384 (70%), Positives = 319/384 (83%)

Query:    53 TASGSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAV 112
             +  G  S+ +   + S  P   SKV++HTISVFVGDESG+INRIAGVFARRGYNIESLAV
Sbjct:    62 SVDGKISDASFSEASSATP--KSKVRKHTISVFVGDESGMINRIAGVFARRGYNIESLAV 119

Query:   113 GLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTST 172
             GLN DKALFTIVV GTERVL+QV+EQL KLVNV+KVEDIS+EP VERELML+K+N    +
Sbjct:   120 GLNRDKALFTIVVCGTERVLQQVIEQLQKLVNVLKVEDISSEPQVERELMLVKVNAHPES 179

Query:   173 WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
               EIMWLVD FRA+VVDI+EHALTIEVTGDPGKM+AV+RNL KF I+E+ RTGKIALRRE
Sbjct:   180 RAEIMWLVDTFRARVVDIAEHALTIEVTGDPGKMIAVERNLKKFQIREIVRTGKIALRRE 239

Query:   233 KLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFS 292
             K+G TAPFW FSAASYPDL+E+    +       ++      +TS+ GDVYPVEP+ D  
Sbjct:   240 KMGATAPFWRFSAASYPDLKEQAPVSVLRSSKKGAIVPQK--ETSAGGDVYPVEPFFDPK 297

Query:   293 ANQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK 352
              +++LDAHWG+L DED SGLRSHTLS+LVN+ PGVLNIVTGV +RRGYNIQSLAVG AE 
Sbjct:   298 VHRILDAHWGLLTDEDTSGLRSHTLSLLVNDIPGVLNIVTGVFARRGYNIQSLAVGHAET 357

Query:   353 EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRD 412
             +G+S ITTV+P TDES+ KLVQ L+KL+D+HEV D+THLPF+EREL+LIKIAVN AARRD
Sbjct:   358 KGISRITTVIPATDESVSKLVQQLYKLVDVHEVHDLTHLPFSERELMLIKIAVNAAARRD 417

Query:   413 VLDIAKIFRARAVDVSDHTITLEV 436
             VLDIA IFRA+AVDVSDHTITL++
Sbjct:   418 VLDIASIFRAKAVDVSDHTITLQL 441

GO:0003984 "acetolactate synthase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009082 "branched-chain amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TIGR_CMR|CHY_0518 CHY_0518 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 89/155 (57%), Positives = 119/155 (76%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVV 136
             RHT++V V +  G++ R+AG+F+RRGYNI+SLAVG   N D +  TIVV G +RVL QVV
Sbjct:     2 RHTLAVLVENNPGVLARVAGLFSRRGYNIDSLAVGRTENPDISRMTIVVEGDDRVLEQVV 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL KLV+VIKV+DI++E +V REL+L+K++ D++T  EIM +V+IFRA++VDI    LT
Sbjct:    62 KQLRKLVDVIKVQDITSEQYVSRELLLLKVHADSNTRGEIMQIVEIFRARIVDIGPKTLT 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             IE TGD  K+ A++  L  FGIKEL RTGKIAL R
Sbjct:   122 IEATGDEDKIEAIENALRPFGIKELVRTGKIALLR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|P65161 ilvH "Putative acetolactate synthase small subunit" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 74/160 (46%), Positives = 111/160 (69%)

Query:    78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQV 135
             K HT+SV V D+ G++ R+A +F+RRG+NIESLAVG     D++  TIVVS  +  L Q+
Sbjct:     4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQI 63

Query:   136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
              +QLNKL+NVIK+ +  +E  V REL LIK+  D  +  +++  V++FRA V+D+S  +L
Sbjct:    64 TKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESL 123

Query:   196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
             T+E TG+ GK+ A+ R L  FGI+E+A++G ++L R   G
Sbjct:   124 TVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSRGPRG 163

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|DET_0832 DET_0832 "acetolactate synthase, small subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/155 (47%), Positives = 106/155 (68%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             +HTI   V D  G++NR+A +F RRG+NI+S+AVG +        TIVV G   ++ QV 
Sbjct:     5 KHTIVALVEDRPGVLNRMASLFRRRGFNIDSIAVGRSETPGFSRMTIVVDGANTMVEQVR 64

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL+K+V+V+KV DI+ +  + REL LIK+    +   EIM +VDIFRAK+VD++  +LT
Sbjct:    65 KQLDKVVDVVKVSDITGQDIICRELALIKVKSTPANRSEIMQIVDIFRAKIVDVASDSLT 124

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             +EVTGD  K+ ++   L  FGIKE+ RTG+IA+ R
Sbjct:   125 VEVTGDEEKVNSLYNLLRAFGIKEITRTGRIAMTR 159

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|GSU_1910 GSU_1910 "acetolactate synthase, small subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 69/159 (43%), Positives = 109/159 (68%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             RHTI+V V +E G+++R+AG+F+ RG+NI+SL+V    D+++   TIV  G +++L Q+ 
Sbjct:     2 RHTITVLVENEFGVLSRVAGLFSGRGFNIDSLSVAPTNDESISRMTIVTRGDDQILEQIT 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QLNKL++VIKV D ++   +ERE+ LIK+  +     E++ +VDIFR+K++D++  + T
Sbjct:    62 KQLNKLIDVIKVIDFTDGEVIEREMALIKVTAEDDARAEVLRIVDIFRSKIIDVTPRSFT 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG 235
             IE TG P K+ A+   L   G+KEL RTG  A+ R   G
Sbjct:   122 IEATGTPAKIDAILELLRPLGLKELVRTGPAAIGRGAKG 160

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1594 CHY_1594 "acetolactate synthase, small subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 65/155 (41%), Positives = 104/155 (67%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             +HT+SV V ++ G++ RI+G+ +RR +NIES+  G + +  +   TIVV G + VL QV+
Sbjct:     2 KHTLSVLVLNKPGVLARISGLLSRRMFNIESITAGYSEEPNITRITIVVQGDDLVLEQVI 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
              QL+KL++VIK++++  E  + REL LIK+        +I+ +V+IFRA +VD++   + 
Sbjct:    62 NQLSKLIDVIKIKELPMEETIARELALIKVRALPEKRADIVNIVNIFRANIVDVNRETMV 121

Query:   197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
             IE+TGD  K+ A+   L+  GI E+ RTGK+AL R
Sbjct:   122 IELTGDEDKINALCEVLTDHGIVEIVRTGKVALNR 156

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|SPO_2579 SPO_2579 "acetolactate synthase, small subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 288 (106.4 bits), Expect = 3.3e-25, P = 3.3e-25
 Identities = 72/181 (39%), Positives = 108/181 (59%)

Query:    56 GSTSNNALPVSQSVPPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN 115
             GS+S++A     ++ P  +   +RHTI++ V +E G++ R+ G+F+ RGYNIESL V   
Sbjct:     9 GSSSHSAY----NLRPTFSDVAERHTIALLVENEPGVLARVIGLFSGRGYNIESLTVA-E 63

Query:   116 VDK----ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH-VERELMLIKLNGDT 170
             VD     +  TIV +GT +V+ Q+  QL ++V+V  V D++ E   VEREL ++K+ G  
Sbjct:    64 VDHTGHLSRITIVTTGTPQVIEQIKAQLGRIVSVRDVHDLTVEGRSVERELAMLKVVGSG 123

Query:   171 STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALR 230
                 E + L DIFRA VVD +  +   E+TG P K+ A    +   G+ E+ARTG  AL 
Sbjct:   124 DKRVEALRLADIFRANVVDSTLSSFVFEITGAPEKIDAFADLMRPLGLAEIARTGVAALL 183

Query:   231 R 231
             R
Sbjct:   184 R 184

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

TIGR_CMR|CPS_3237 CPS_3237 "acetolactate synthase III, small subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 286 (105.7 bits), Expect = 5.7e-25, P = 5.7e-25
 Identities = 62/164 (37%), Positives = 104/164 (63%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             R  +++ + +E G ++RI G+F++R +NIESL V    D +L   TI   G ++VL Q+V
Sbjct:     2 RRILAILMENEPGSLSRIVGLFSQRAFNIESLTVAPTDDNSLSRMTIATKGDDKVLEQIV 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNG-DTSTWPEIMWLVDIFRAKVVDISEHAL 195
             +Q+NKL++VIK+ DI++  H+EREL+L+K+   +  +  E+  + DIFR  ++DI +   
Sbjct:    62 KQVNKLIDVIKITDITDRKHIERELLLVKVAAMNDKSRTEVTRITDIFRGNIIDIGKQVY 121

Query:   196 TIEVTGDPGKMVAVQRNL-SKFGIKELARTGKIALRREKLGDTA 238
             T+++TGD  K+ A    L ++  I E AR+G + + R   GD A
Sbjct:   122 TVQLTGDAEKLNAFINALQNETEIIESARSGCVGMAR---GDQA 162

GO:0003984 "acetolactate synthase activity" evidence=ISS

GO:0005948 "acetolactate synthase complex" evidence=ISS

GO:0009097 "isoleucine biosynthetic process" evidence=ISS

GO:0009099 "valine biosynthetic process" evidence=ISS

UNIPROTKB|P00894 ilvH "IlvH" [Escherichia coli K-12 (taxid:83333)]

 Score = 278 (102.9 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 61/158 (38%), Positives = 100/158 (63%)

Query:    79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
             R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct:     2 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 61

Query:   137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
             +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++    T
Sbjct:    62 KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 121

Query:   197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
             +++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct:   122 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 157

GO:0009097 "isoleucine biosynthetic process" evidence=IEA;IDA

GO:0003984 "acetolactate synthase activity" evidence=IEA;IDA

GO:0009099 "valine biosynthetic process" evidence=IEA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SMC2	ILVH_NICPL	No assigned EC number	0.7652	0.7622	0.7639	N/A	no
Q9FFF4	ILVH1_ARATH	No assigned EC number	0.7125	0.8933	0.8427	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.2.1	LOW CONFIDENCE prediction!
4th Layer	2.2.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00012144001	SubName- Full=Chromosome undetermined scaffold_351, whole genome shotgun sequence; (421 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026591001	RecName- Full=3-isopropylmalate dehydrogenase; EC=1.1.1.85;; Catalyzes the oxidation of 3-carbo [...] (405 aa)	•					•	•		0.972
	GSVIVG00000550001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (476 aa)	•					•	•		0.959
	GSVIVG00018719001	SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shot [...] (588 aa)	•					•	•		0.958
	GSVIVG00037861001	RecName- Full=Acetolactate synthase; EC=2.2.1.6; (657 aa)	•		•			•	•		0.935
	GSVIVG00020486001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa)	•						•		0.932
	GSVIVG00029877001	RecName- Full=Acetolactate synthase; EC=2.2.1.6; (616 aa)	•		•			•	•		0.923
	GSVIVG00005682001	SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (447 aa)	•						•		0.912
	GSVIVG00028924001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (398 aa)						•			0.899
	GSVIVG00028312001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (197 aa)						•			0.899
	GSVIVG00026166001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (89 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	2e-71
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	1e-66
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	3e-57
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	2e-56
PRK11895	161	PRK11895, ilvH, acetolactate synthase 3 regulatory	3e-47
CHL00100	174	CHL00100, ilvH, acetohydroxyacid synthase small su	6e-47
COG0440	163	COG0440, IlvH, Acetolactate synthase, small (regul	4e-37
TIGR00119	157	TIGR00119, acolac_sm, acetolactate synthase, small	5e-35
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	2e-28
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	3e-28
cd04878	72	cd04878, ACT_AHAS, N-terminal ACT domain of the Es	1e-25
pfam10369	75	pfam10369, ALS_ss_C, Small subunit of acetolactate	3e-12
pfam13710	63	pfam13710, ACT_5, ACT domain	4e-12
pfam13710	63	pfam13710, ACT_5, ACT domain	4e-10
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	5e-08
pfam01842	66	pfam01842, ACT, ACT domain	4e-07
PRK06737	76	PRK06737, PRK06737, acetolactate synthase 1 regula	5e-07
pfam01842	66	pfam01842, ACT, ACT domain	8e-07
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	1e-04
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	2e-04
cd04883	72	cd04883, ACT_AcuB, C-terminal ACT domain of the Ba	8e-04
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	0.003
PRK08178	96	PRK08178, PRK08178, acetolactate synthase 1 regula	0.003
pfam13291	77	pfam13291, ACT_4, ACT domain	0.003
PRK06349	426	PRK06349, PRK06349, homoserine dehydrogenase; Prov	0.003
cd04879	71	cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include	0.004

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  222 bits (568), Expect = 2e-71
 Identities = 82/155 (52%), Positives = 111/155 (71%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RHT+SV V +E G+++R+AG+F+RRGYNIESL VG   D  L   TIV SG E+V+ Q+ 
Sbjct: 2   RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQIT 61

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL++V+KV D++ E HVEREL L+K+        EI+ L DIFRAK+VD++  +LT
Sbjct: 62  KQLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLT 121

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IEVTGD  K+ A    L  +GIKE+ RTG +A+ R
Sbjct: 122 IEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGR 156

Length = 161

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  210 bits (536), Expect = 1e-66
 Identities = 96/157 (61%), Positives = 125/157 (79%), Gaps = 2/157 (1%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQV 135
            +HT+SV V DESG++ RIAG+FARRG+NIESLAVG    K +   T+VV G +R + Q+
Sbjct: 1   MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQL 60

Query: 136 VEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHAL 195
            +QL KLVN++KV+DI+N P VERELMLIK+N ++ T PEI+ +  IFRAKVVD+SE +L
Sbjct: 61  TKQLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESL 120

Query: 196 TIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
            +EVTGDPGK+VA+++ L KFGI E+ARTGKIAL RE
Sbjct: 121 ILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRE 157

Length = 174

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  185 bits (472), Expect = 3e-57
 Identities = 80/156 (51%), Positives = 107/156 (68%), Gaps = 2/156 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH +SV V +E G+++R+AG+F RRG+NIESL VG   D  L   TIVV G ++VL Q+ 
Sbjct: 1   RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQIT 60

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKLV+VIKV D++    VEREL L+K++       EI+ L +IFR ++VD+S  + T
Sbjct: 61  KQLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYT 120

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           +EVTGD  K+ A    L  FGIKE+ARTGK AL R 
Sbjct: 121 VEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRG 156

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  183 bits (468), Expect = 2e-56
 Identities = 81/158 (51%), Positives = 113/158 (71%), Gaps = 2/158 (1%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
             R  +S+ V +E G+++R+ G+F+RRGYNIESL VG      L   TIVVSG E+VL Q
Sbjct: 2   PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQ 61

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           +++QLNKL++V+KV D+++EPHVEREL LIK++ + S   EI  + +IFRA VVD+S  +
Sbjct: 62  IIKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPES 121

Query: 195 LTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE 232
           LTIE+TGD  K+ A  R L  +GI E+ARTG +A+ R 
Sbjct: 122 LTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRG 159

Length = 163

>gnl|CDD|183365 PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed

 Score =  159 bits (406), Expect = 3e-47
 Identities = 60/122 (49%), Positives = 85/122 (69%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV N PGVL+ V G+ SRRGYNI+SL VGP E  GLS +T V  G ++ I ++ +
Sbjct: 3   HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITK 62

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KLID+ +V D+T     EREL L+K+  +   R ++L +A IFRA+ VDV+  ++T+
Sbjct: 63  QLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTI 122

Query: 435 EV 436
           EV
Sbjct: 123 EV 124

Length = 161

>gnl|CDD|214364 CHL00100, ilvH, acetohydroxyacid synthase small subunit

 Score =  159 bits (404), Expect = 6e-47
 Identities = 67/122 (54%), Positives = 98/122 (80%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV +  GVL  + G+ +RRG+NI+SLAVGPAE++G+S IT VVPG D +I +L +
Sbjct: 3   HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTK 62

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KL+++ +VQDIT++P  EREL+LIKI VN+  R ++L+IA+IFRA+ VD+S+ ++ L
Sbjct: 63  QLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLIL 122

Query: 435 EV 436
           EV
Sbjct: 123 EV 124

Length = 174

>gnl|CDD|223517 COG0440, IlvH, Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

 Score =  133 bits (336), Expect = 4e-37
 Identities = 61/124 (49%), Positives = 86/124 (69%)

Query: 313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKL 372
               LS+LV N PGVL+ VTG+ SRRGYNI+SL VGP E  GLS IT VV G ++ + ++
Sbjct: 3   MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQI 62

Query: 373 VQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTI 432
           ++ L+KLID+ +V D+T  P  EREL LIK++   + R ++  I +IFRA  VDVS  ++
Sbjct: 63  IKQLNKLIDVLKVLDLTSEPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESL 122

Query: 433 TLEV 436
           T+E+
Sbjct: 123 TIEL 126

Length = 163

>gnl|CDD|129225 TIGR00119, acolac_sm, acetolactate synthase, small subunit

 Score =  127 bits (321), Expect = 5e-35
 Identities = 55/122 (45%), Positives = 81/122 (66%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           H LS+LV N PGVL+ V G+ +RRG+NI+SL VGP E   LS +T VV G D+ + ++ +
Sbjct: 2   HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITK 61

Query: 375 LLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
            L+KL+D+ +V D+T     EREL L+K++     R +++ +  IFR R VDVS  + T+
Sbjct: 62  QLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTV 121

Query: 435 EV 436
           EV
Sbjct: 122 EV 123

Acetolactate synthase is a heterodimeric thiamine pyrophosphate enzyme with large and small subunits. One of the three isozymes in E. coli K12 contains a frameshift in the large subunit gene and is not expressed. acetohydroxyacid synthase is a synonym [Amino acid biosynthesis, Pyruvate family]. Length = 157

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score =  106 bits (268), Expect = 2e-28
 Identities = 36/75 (48%), Positives = 49/75 (65%)

Query: 158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG 217
           EREL L+K+     T  EI+ + DIFRAK+VD++  + TIE+TGDP K+ A    L  FG
Sbjct: 1   ERELALVKVRATGETRAEILRIADIFRAKIVDVTPDSYTIELTGDPEKIDAFIDLLRPFG 60

Query: 218 IKELARTGKIALRRE 232
           I E+ RTG +A+ R 
Sbjct: 61  ILEVVRTGVVAIARG 75

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score =  106 bits (266), Expect = 3e-28
 Identities = 40/72 (55%), Positives = 55/72 (76%), Gaps = 2/72 (2%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVGL--NVDKALFTIVVSGTERVLRQVVE 137
           HT+SV V +E G++NRI+G+FARRG+NIESL VG   +   +  TIVV G + V+ Q+V+
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 138 QLNKLVNVIKVE 149
           QLNKLV+V+KV 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153150 cd04878, ACT_AHAS, N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

 Score = 98.7 bits (247), Expect = 1e-25
 Identities = 39/72 (54%), Positives = 55/72 (76%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           HTLS+LV N PGVLN ++G+ +RRG+NI+SL VGP E  G+S IT VV G D+ I ++V+
Sbjct: 1   HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVK 60

Query: 375 LLHKLIDLHEVQ 386
            L+KL+D+ +V 
Sbjct: 61  QLNKLVDVLKVS 72

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|204463 pfam10369, ALS_ss_C, Small subunit of acetolactate synthase

 Score = 61.3 bits (150), Expect = 3e-12
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           EREL L+K+      R ++L IA IFRA+ VDV+  + T+E+
Sbjct: 1   ERELALVKVRATGETRAEILRIADIFRAKIVDVTPDSYTIEL 42

ALS_ss_C is the C-terminal half of a family of proteins which are the small subunits of acetolactate synthase. Acetolactate synthase is a tetrameric enzyme, containing probably two large and two small subunits, which catalyzes the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides. Length = 75

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 61.0 bits (149), Expect = 4e-12
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 88  DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNV 145
           D  G++ RI  V  RRG+NI SL +    D  +   T+ V G ER +  +V QL KL++V
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 146 IKV 148
           ++V
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|222334 pfam13710, ACT_5, ACT domain

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDL 382
           + PGVL  +  V+ RRG+NI SL +   E +G++ +T  V G +  +  LV  L KLID+
Sbjct: 1   DRPGVLERILRVVRRRGFNIASLNMSTTEDDGVARLTLTVEGHERPVDLLVNQLEKLIDV 60

Query: 383 HEV 385
            EV
Sbjct: 61  LEV 63

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 63

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 49.7 bits (118), Expect = 5e-08
 Identities = 26/75 (34%), Positives = 43/75 (57%)

Query: 314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLV 373
           SHT S++++N P VL  ++G+ +RRGY I SL +   +  G+S +      T+     LV
Sbjct: 2   SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLV 61

Query: 374 QLLHKLIDLHEVQDI 388
             L KLI++ +V  +
Sbjct: 62  SQLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTERVLRQVVEQ 138
             + V V D  G++  + G  A RG NIES++   + DKA +  IVV   E  L   +E 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEA 60

Query: 139 LNKLVN 144
           L KL+ 
Sbjct: 61  LKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|180675 PRK06737, PRK06737, acetolactate synthase 1 regulatory subunit; Validated

 Score = 46.6 bits (110), Expect = 5e-07
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 80  HTISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVVE 137
           HT S+ + ++  ++ RI+G+FARRGY I SL +        +   +    TE     +V 
Sbjct: 3   HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVS 62

Query: 138 QLNKLVNVIKVEDI 151
           QL KL+NV++V  +
Sbjct: 63  QLKKLINVLQVNKL 76

Length = 76

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L + V + PG+L  V G ++ RG NI+S++   +  +       VV   +E +   ++
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVD-EEDLEAALE 59

Query: 375 LLHKLID 381
            L KL+ 
Sbjct: 60  ALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKALFTIVVSGTERVLRQVVEQL 139
           ++V   D  G++ ++  V A  G NI S+      +  +A   IVV G    L +++E L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD-LEKLLEAL 59

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           L++   + PG+L  V  V++  G NI S+    +   G + I  VV G  + + KL++ L
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGD-LEKLLEAL 59

Query: 377 H 377
            
Sbjct: 60  E 60

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153155 cd04883, ACT_AcuB, C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG 354
           V + PG L  +  +   RG NI S+ V P+++E 
Sbjct: 8   VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEED 41

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 5/75 (6%)

Query: 86  VGDESGIINRIAGVFARRGYNIES---LAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL 142
           V +  G+++ + G+FARR +N+E    L +  + DK+   ++V+  +R L Q++ Q+ KL
Sbjct: 15  VRNHPGVMSHVCGLFARRAFNVEGILCLPIQ-DGDKSRIWLLVNDDQR-LEQMISQIEKL 72

Query: 143 VNVIKVEDISNEPHV 157
            +V+KV    ++P +
Sbjct: 73  EDVLKVRRNQSDPTM 87

Length = 96

>gnl|CDD|236174 PRK08178, PRK08178, acetolactate synthase 1 regulatory subunit; Reviewed

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL 375
            L + V N PGV++ V G+ +RR +N++ +   P +    S I  +V   D+ + +++  
Sbjct: 10  ILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-NDDQRLEQMISQ 68

Query: 376 LHKLIDLHEVQ 386
           + KL D+ +V+
Sbjct: 69  IEKLEDVLKVR 79

Length = 96

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 81  TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK---ALFTIVVSGTERVLRQVVE 137
            + +   D  G++  I  V +    NI S+      +       T+ V   E  L +++ 
Sbjct: 6   DLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVKDLEH-LARLIR 64

Query: 138 QLNKLVNVIKVE 149
           +L K+  VI VE
Sbjct: 65  KLRKIPGVISVE 76

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|235783 PRK06349, PRK06349, homoserine dehydrogenase; Provisional

 Score = 39.3 bits (93), Expect = 0.003
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV---SGTERVLRQV 135
           ++ + + V D+ G++ +IA +FA  G +IES+ +          IV+     +E  LR  
Sbjct: 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESI-LQKGAGGEGAEIVIVTHETSEAALRAA 406

Query: 136 VEQLNKL------VNVIKVE 149
           +  +  L       +VI+VE
Sbjct: 407 LAAIEALDVVLGIPSVIRVE 426

Length = 426

>gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 88  DESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNV 145
           D  G+I ++  +    G NI ++ VG       A   + V     V  +V+E+L  L  +
Sbjct: 8   DVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGI 65

Query: 146 IKVEDI 151
           I+V  I
Sbjct: 66  IRVRLI 71

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	100.0
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	100.0
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	100.0
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	100.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	100.0
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.98
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.97
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	99.97
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.97
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.96
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	99.95
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	99.95
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	99.94
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	99.92
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.92
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.89
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	99.81
PF10369	75	ALS_ss_C: Small subunit of acetolactate synthase;	99.47
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	99.04
COG3978	86	Acetolactate synthase (isozyme II), small (regulat	99.04
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.86
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.83
COG4747	142	ACT domain-containing protein [General function pr	98.78
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.74
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.69
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.65
PRK06349	426	homoserine dehydrogenase; Provisional	98.62
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.59
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	98.57
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.54
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.52
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	98.45
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	98.38
PRK08577	136	hypothetical protein; Provisional	98.38
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.34
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.33
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.32
PRK06349	426	homoserine dehydrogenase; Provisional	98.28
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.25
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	98.25
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	98.24
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.23
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	98.23
PRK11589	190	gcvR glycine cleavage system transcriptional repre	98.23
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	98.16
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	98.15
PRK08577	136	hypothetical protein; Provisional	98.15
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	98.14
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	98.13
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	98.12
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	98.11
PRK00194	90	hypothetical protein; Validated	98.07
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	98.05
PRK00194	90	hypothetical protein; Validated	98.01
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	98.01
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	98.0
PRK04435	147	hypothetical protein; Provisional	97.97
PRK04435	147	hypothetical protein; Provisional	97.96
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.94
cd02116	60	ACT ACT domains are commonly involved in specifica	97.94
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.91
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.89
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.88
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.86
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.85
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.82
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.82
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	97.81
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.81
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.81
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.74
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.72
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	97.7
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.67
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	97.66
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	97.65
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.64
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.61
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	97.57
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.54
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.52
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.5
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.49
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.48
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	97.45
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.39
cd02116	60	ACT ACT domains are commonly involved in specifica	97.39
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	97.38
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.36
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	97.36
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	97.34
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.33
PRK05092	931	PII uridylyl-transferase; Provisional	97.32
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	97.31
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.3
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.29
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	97.26
COG4492	150	PheB ACT domain-containing protein [General functi	97.24
COG4492	150	PheB ACT domain-containing protein [General functi	97.18
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	97.18
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	97.15
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	97.12
COG4747	142	ACT domain-containing protein [General function pr	97.12
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	97.11
PRK07431	587	aspartate kinase; Provisional	97.07
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	97.0
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.99
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.96
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	96.95
PRK03381	774	PII uridylyl-transferase; Provisional	96.94
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.93
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	96.88
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	96.87
COG1707	218	ACT domain-containing protein [General function pr	96.86
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.85
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	96.76
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	96.72
COG1707	218	ACT domain-containing protein [General function pr	96.67
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	96.67
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.65
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.64
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.62
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.58
PRK00275	895	glnD PII uridylyl-transferase; Provisional	96.56
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.53
PRK03059	856	PII uridylyl-transferase; Provisional	96.52
PRK05007	884	PII uridylyl-transferase; Provisional	96.48
PRK11589	190	gcvR glycine cleavage system transcriptional repre	96.48
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	96.46
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.36
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.35
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.34
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.24
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	96.18
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	96.15
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.04
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	96.01
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	95.99
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.97
PRK07334	403	threonine dehydratase; Provisional	95.97
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.88
PRK07431	587	aspartate kinase; Provisional	95.83
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	95.8
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	95.77
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.72
COG2150	167	Predicted regulator of amino acid metabolism, cont	95.71
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.7
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.7
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.68
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	95.63
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.61
PRK11899	279	prephenate dehydratase; Provisional	95.6
PRK04374	869	PII uridylyl-transferase; Provisional	95.51
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.5
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	95.43
PRK06635	404	aspartate kinase; Reviewed	95.4
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	95.35
PRK06382	406	threonine dehydratase; Provisional	95.25
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.16
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	95.1
PRK08198	404	threonine dehydratase; Provisional	95.08
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	95.0
PRK07334	403	threonine dehydratase; Provisional	94.97
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	94.91
PRK06545	359	prephenate dehydrogenase; Validated	94.89
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	94.83
PRK11899	279	prephenate dehydratase; Provisional	94.76
COG2061	170	ACT-domain-containing protein, predicted allosteri	94.74
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.68
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.6
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	94.48
PRK06382	406	threonine dehydratase; Provisional	94.46
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	94.39
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	94.37
COG2061	170	ACT-domain-containing protein, predicted allosteri	94.32
PRK06545	359	prephenate dehydrogenase; Validated	94.31
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	94.29
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	94.27
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	94.27
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.18
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.02
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	93.86
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.82
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.76
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	93.73
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	93.72
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	93.7
PRK08818	370	prephenate dehydrogenase; Provisional	93.64
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	93.42
PRK08198	404	threonine dehydratase; Provisional	93.33
PRK12483	521	threonine dehydratase; Reviewed	93.32
PRK11898	283	prephenate dehydratase; Provisional	93.23
PRK08818	370	prephenate dehydrogenase; Provisional	93.23
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	93.11
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	93.08
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	92.87
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	92.75
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	92.7
PRK03059	856	PII uridylyl-transferase; Provisional	92.69
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	92.68
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	92.66
PRK11898	283	prephenate dehydratase; Provisional	92.49
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	92.38
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	92.37
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	92.16
PRK05092	931	PII uridylyl-transferase; Provisional	91.9
PRK15385	225	magnesium transport protein MgtC; Provisional	91.7
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	91.68
PRK08210	403	aspartate kinase I; Reviewed	91.59
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	91.58
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	91.52
COG3830	90	ACT domain-containing protein [Signal transduction	91.46
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	91.25
PLN02317	382	arogenate dehydratase	91.2
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	91.15
PRK03381	774	PII uridylyl-transferase; Provisional	91.05
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	91.0
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	90.87
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	90.68
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	90.45
PRK05007	884	PII uridylyl-transferase; Provisional	90.33
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	90.06
COG2150	167	Predicted regulator of amino acid metabolism, cont	90.03
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	89.48
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	89.33
PRK01759	854	glnD PII uridylyl-transferase; Provisional	89.28
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	89.18
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	89.08
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	88.7
PLN02550	591	threonine dehydratase	88.54
PLN02317	382	arogenate dehydratase	88.52
PRK00275	895	glnD PII uridylyl-transferase; Provisional	88.44
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	88.28
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	88.01
COG3830	90	ACT domain-containing protein [Signal transduction	87.98
PRK02047	91	hypothetical protein; Provisional	87.78
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	87.11
PF09383	76	NIL: NIL domain; InterPro: IPR018449 This domain i	86.99
PRK08639	420	threonine dehydratase; Validated	86.59
PRK08526	403	threonine dehydratase; Provisional	86.53
PF04350	144	PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.	86.14
PRK09034	454	aspartate kinase; Reviewed	86.09
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	86.02
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	85.84
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	85.66
PRK01759	854	glnD PII uridylyl-transferase; Provisional	85.58
TIGR02079	409	THD1 threonine dehydratase. This model represents	85.46
PRK04374	869	PII uridylyl-transferase; Provisional	85.42
PRK15385	225	magnesium transport protein MgtC; Provisional	84.9
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	84.74
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	84.58
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	84.48
PRK00907	92	hypothetical protein; Provisional	84.02
PRK09224	504	threonine dehydratase; Reviewed	83.78
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	83.59
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	83.1
PRK09084	448	aspartate kinase III; Validated	82.73
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	82.58
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	82.55
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	82.29
PF04350	144	PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.	82.28
PRK04998	88	hypothetical protein; Provisional	82.02
PRK09977	215	putative Mg(2+) transport ATPase; Provisional	81.92
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	81.9
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	81.88
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	81.86
PRK14434	92	acylphosphatase; Provisional	81.78
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	81.35
PRK06291	465	aspartate kinase; Provisional	81.3
PRK12483	521	threonine dehydratase; Reviewed	80.6
PLN02551	521	aspartokinase	80.38
PRK08210	403	aspartate kinase I; Reviewed	80.27

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=1.2e-50  Score=372.19  Aligned_cols=157  Identities=52%  Similarity=0.827  Sum_probs=153.1

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~  155 (450)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++.  ||+++++|++.++|++|||+||+||++|.++++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            5899999999999999999999999999999999999987774  99999999999999999999999999999999999


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 013068          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (450)
Q Consensus       156 ~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~~  234 (450)
                      +|+|||+||||++++.+|.+|++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.||..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~  159 (161)
T PRK11895         81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK  159 (161)
T ss_pred             hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999963

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=3.6e-50  Score=367.68  Aligned_cols=155  Identities=52%  Similarity=0.801  Sum_probs=151.3

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchh
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~  156 (450)
                      +|+|+++++|+||+|+||+++|+||||||+|++++++++++.  ||++++++++.++||.|||+||+||++|.+++++++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            589999999999999999999999999999999999987774  999999999999999999999999999999999999


Q ss_pred             hhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 013068          157 VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (450)
Q Consensus       157 V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~  233 (450)
                      |+||||||||++++++|.+|++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.||.
T Consensus        81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~  157 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP  157 (157)
T ss_pred             eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999983

acetohydroxyacid synthase is a synonym.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=2.8e-50  Score=373.82  Aligned_cols=164  Identities=59%  Similarity=0.889  Sum_probs=157.0

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~  155 (450)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++.  |||++.++++.++||.+||+||+||++|+++++++
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            5899999999999999999999999999999999999999975  99999999888999999999999999999999999


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCC
Q 013068          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLG  235 (450)
Q Consensus       156 ~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~~~  235 (450)
                      +|+||||||||++++++|.||++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.|++..
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~  160 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV  160 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999766


Q ss_pred             CCcccc
Q 013068          236 DTAPFW  241 (450)
Q Consensus       236 ~~~~~~  241 (450)
                      ...++.
T Consensus       161 ~~~~l~  166 (174)
T CHL00100        161 NTEYLR  166 (174)
T ss_pred             hHHHHH
Confidence            554443

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-49  Score=364.67  Aligned_cols=160  Identities=50%  Similarity=0.768  Sum_probs=155.5

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEEEecCC
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN  153 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~  153 (450)
                      .+|+|+||++++|+||+|+||+|+|+||||||+||+|++|++++  +|||++.||+..++|++|||+||+||++|.++++
T Consensus         1 ~~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~   80 (163)
T COG0440           1 MPMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTS   80 (163)
T ss_pred             CCceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCC
Confidence            36899999999999999999999999999999999999999997  5999999998999999999999999999999999


Q ss_pred             chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 013068          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (450)
Q Consensus       154 ~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~  233 (450)
                      +++++|||+|+||++++..|.|+.+++++|||+|+|++++++++|+||+++|+++|++.|+||||+|++|||.+||.||+
T Consensus        81 ~~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~  160 (163)
T COG0440          81 EPHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGP  160 (163)
T ss_pred             cchhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccC
Confidence            99999999999999998889999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CC
Q 013068          234 LG  235 (450)
Q Consensus       234 ~~  235 (450)
                      ..
T Consensus       161 ~~  162 (163)
T COG0440         161 KK  162 (163)
T ss_pred             CC
Confidence            53

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-51  Score=396.60  Aligned_cols=236  Identities=51%  Similarity=0.739  Sum_probs=219.7

Q ss_pred             cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        74 ~~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      .++.++|+|++||.|+||+|+||+|+|++||||||||.||.||++++  ||||+.|.|+.++|.++||+||++|++|.||
T Consensus        72 ~qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDy  151 (309)
T KOG2663|consen   72 RQRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDY  151 (309)
T ss_pred             cccccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeec
Confidence            46899999999999999999999999999999999999999999985  8999999999999999999999999999999


Q ss_pred             CCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 013068          152 SNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR  231 (450)
Q Consensus       152 t~~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~R  231 (450)
                      +++++|+|||||+||+         ++..+.|+|  ||..++++++|+|||++   ++...|++|+|-|++|||. |+.|
T Consensus       152 t~e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak-allr  216 (309)
T KOG2663|consen  152 TNEPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK-ALLR  216 (309)
T ss_pred             CCChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-HHHH
Confidence            9999999999999998         899999999  99999999999999999   7889999999999999999 8999


Q ss_pred             CcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCC
Q 013068          232 EKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSG  311 (450)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~  311 (450)
                      .+++.++++|+|+++.||++.+..+...+.+..            +.+|||||++++.++-         | +++++.+|
T Consensus       217 lk~~~la~i~rlta~f~grvvdis~~s~i~elt------------a~p~rV~~fl~l~dp~---------g-vle~~rSG  274 (309)
T KOG2663|consen  217 LKMGHLAPIWRLTAAFYGRVVDISETSCIVELT------------AKPGRVYPFLPLVDPK---------G-VLEEDRSG  274 (309)
T ss_pred             HhhhccchHHHHhhhhccchhccccceeeeeec------------cCCCcccccccccCcc---------c-chhhcccc
Confidence            999999999999999999998877777755433            5679999999974432         2 56889999


Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g  364 (450)
                      ++.||++.++.|-|                  ++++|+.|.+++||||.+.+|
T Consensus       275 l~a~trspl~n~v~------------------e~A~~dae~eei~rIttlpPg  309 (309)
T KOG2663|consen  275 LRAHTRSPLVNSVP------------------ELAVGDAEIEEISRITTLPPG  309 (309)
T ss_pred             hhhcccccccccCh------------------hhccCchhhhhheeccccCCC
Confidence            99999999999999                  999999999999999988765

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=100.00  E-value=4.8e-43  Score=321.96  Aligned_cols=137  Identities=46%  Similarity=0.719  Sum_probs=132.7

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCCh
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP  392 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~  392 (450)
                      |+|+|+++++|+||+|+||+++|+||||||+||+++++++++++||||+++||++.++||.|||+||+||++|.++++++
T Consensus         1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~   80 (161)
T PRK11895          1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA   80 (161)
T ss_pred             CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068          393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSL  449 (450)
Q Consensus       393 ~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L  449 (450)
                      +|+|||+||||++++.+|.+|++++++|||||+|++++++++|+||+++|+ +|++.|
T Consensus        81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l  138 (161)
T PRK11895         81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLL  138 (161)
T ss_pred             hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999998 556554

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-43  Score=324.06  Aligned_cols=136  Identities=46%  Similarity=0.686  Sum_probs=132.3

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~  391 (450)
                      +|+|+||++|+|+||||+|++|||+||||||+||+|++||++++|||||++.||+..+|||+|||+||+||++|.+++++
T Consensus         2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~   81 (163)
T COG0440           2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE   81 (163)
T ss_pred             CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence            57999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             hhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhhhhh
Q 013068          392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICFFFD  447 (450)
Q Consensus       392 ~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~~~~  447 (450)
                      ++++|||||+||++++..|.|+.+++++|||+|+|++++++++|+||+++|++.|-
T Consensus        82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi  137 (163)
T COG0440          82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFI  137 (163)
T ss_pred             chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999986553

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=100.00  E-value=1.4e-42  Score=317.80  Aligned_cols=136  Identities=42%  Similarity=0.690  Sum_probs=131.8

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChh
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF  393 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~  393 (450)
                      +|+|+++++|+||+|+||+++|+||||||+||+++++++++++||||+++|+++.++||.|||+||+||++|.+++++++
T Consensus         1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~   80 (157)
T TIGR00119         1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI   80 (157)
T ss_pred             CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068          394 AERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSL  449 (450)
Q Consensus       394 V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L  449 (450)
                      |+||||||||++++++|.+|++++++|||+|||++++++++|+||+++|+ +|++.|
T Consensus        81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l  137 (157)
T TIGR00119        81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELL  137 (157)
T ss_pred             eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988 555554

acetohydroxyacid synthase is a synonym.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=100.00  E-value=3.9e-42  Score=319.45  Aligned_cols=137  Identities=50%  Similarity=0.784  Sum_probs=131.8

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCCh
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLP  392 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~  392 (450)
                      |+|+|+++++|+||+|+||+++|+||||||+||++++++++++|||||+++++++.++||.+||+||+||++|.++++.+
T Consensus         1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~   80 (174)
T CHL00100          1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP   80 (174)
T ss_pred             CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence            48999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             hHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh-hhhhc
Q 013068          393 FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF-FFDSL  449 (450)
Q Consensus       393 ~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~-~~~~L  449 (450)
                      +|+||||||||++++.+|.+|++++++|||||+|++++++++|+||+++|++ |++.|
T Consensus        81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l  138 (174)
T CHL00100         81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLL  138 (174)
T ss_pred             ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999985 44443

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.98  E-value=1.5e-32  Score=233.55  Aligned_cols=90  Identities=23%  Similarity=0.377  Sum_probs=85.7

Q ss_pred             CCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       309 ~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      ++.+.+|+||++|+|+||||+||+|||+||||||+||+||+|+++++|||||++. +++.++||+|||+||+||++|.++
T Consensus         3 ~~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l   81 (96)
T PRK08178          3 NTTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRN   81 (96)
T ss_pred             CCCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEEC
Confidence            4556789999999999999999999999999999999999999999999999999 568999999999999999999999


Q ss_pred             CCChhHHHhhh
Q 013068          389 THLPFAERELI  399 (450)
Q Consensus       389 t~~~~V~REL~  399 (450)
                      ++++++++|+.
T Consensus        82 ~~~~~v~~e~~   92 (96)
T PRK08178         82 QSDPTMFNKIA   92 (96)
T ss_pred             CCchhHHHHHH
Confidence            99999999985

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.97  E-value=5e-32  Score=225.47  Aligned_cols=79  Identities=28%  Similarity=0.402  Sum_probs=76.1

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEE--ecC
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ--DIT  389 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~--dlt  389 (450)
                      |+|+||++|+|+||||+||+|+|+||||||+||+||+||+|++||||||++ ||++.++||+|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            479999999999999999999999999999999999999999999999998 99999999999999999999999  777


Q ss_pred             CC
Q 013068          390 HL  391 (450)
Q Consensus       390 ~~  391 (450)
                      +.
T Consensus        81 ~~   82 (84)
T PRK13562         81 DN   82 (84)
T ss_pred             cc
Confidence            64

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=99.97  E-value=1.8e-32  Score=265.97  Aligned_cols=120  Identities=39%  Similarity=0.621  Sum_probs=117.3

Q ss_pred             CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCC
Q 013068          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITH  390 (450)
Q Consensus       311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~  390 (450)
                      ..++|+|+++|+|+||||+||+|+|+||||||+||.||-+|++.+||||||+.|+|+.++|.++||+||++|++|.|++.
T Consensus        74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~  153 (309)
T KOG2663|consen   74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTN  153 (309)
T ss_pred             cccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCch
Q 013068          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINN  441 (450)
Q Consensus       391 ~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~e  441 (450)
                      +++|+|||||+||+         +-..+.|||  +|..+++.++|+||++.
T Consensus       154 e~~VeRELmlakvs---------llg~d~Fra--vd~~eh~~t~e~tadsg  193 (309)
T KOG2663|consen  154 EPIVERELMLAKVS---------LLGVDYFRA--VDLHEHTLTIEVTADSG  193 (309)
T ss_pred             ChHHHHHHHHHHHH---------hhhHHHHHh--hhhhhhhhhhhhccCch
Confidence            99999999999998         779999999  99999999999999995

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.97  E-value=1.6e-30  Score=213.00  Aligned_cols=76  Identities=34%  Similarity=0.568  Sum_probs=74.3

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      |+|+|+++|+|+||||+||+|+|+||||||+||+||+||++++|||||++.|+++.++||.|||+||+||++|.++
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999985

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.96  E-value=1.2e-28  Score=201.86  Aligned_cols=75  Identities=25%  Similarity=0.375  Sum_probs=72.6

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d  387 (450)
                      ||+|+|+++|+|+||||+||+|||+||||||+||+||+|+++++|||||++. +++.++||.|||+||+||++|+.
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence            6799999999999999999999999999999999999999999999999995 88999999999999999999974

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=99.95  E-value=3.4e-28  Score=207.01  Aligned_cols=86  Identities=23%  Similarity=0.443  Sum_probs=81.3

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEEEecCC
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN  153 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~  153 (450)
                      .+.+|+||++|+|+||||+||+|||+||||||+||+||+|++++  +|||++. ++..++||+|||+||+||++|.++++
T Consensus         5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~   83 (96)
T PRK08178          5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQS   83 (96)
T ss_pred             CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCC
Confidence            36789999999999999999999999999999999999999997  5999998 56899999999999999999999999


Q ss_pred             chhhhhhee
Q 013068          154 EPHVERELM  162 (450)
Q Consensus       154 ~~~V~RELa  162 (450)
                      ++.|++|+.
T Consensus        84 ~~~v~~e~~   92 (96)
T PRK08178         84 DPTMFNKIA   92 (96)
T ss_pred             chhHHHHHH
Confidence            999999974

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=99.95  E-value=6e-28  Score=201.12  Aligned_cols=78  Identities=27%  Similarity=0.485  Sum_probs=74.0

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEEE--ecC
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE--DIS  152 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V~--dlt  152 (450)
                      |+|+||++|+|+||+|+||+|+|+||||||+||+||+|+++++  |||+++ ||++.++|++|||+||+||++|.  |++
T Consensus         1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~   80 (84)
T PRK13562          1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV   80 (84)
T ss_pred             CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence            5899999999999999999999999999999999999999984  999998 99999999999999999999999  777


Q ss_pred             Cch
Q 013068          153 NEP  155 (450)
Q Consensus       153 ~~~  155 (450)
                      +.+
T Consensus        81 ~~~   83 (84)
T PRK13562         81 DNE   83 (84)
T ss_pred             ccC
Confidence            654

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=99.94  E-value=1.1e-26  Score=190.35  Aligned_cols=74  Identities=34%  Similarity=0.579  Sum_probs=71.2

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      |+|+|+++|+|+||+|+||+|+|+||||||+||++|++++++.  |||++.|+++.++||.|||+||+||++|.++
T Consensus         1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~   76 (76)
T PRK06737          1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL   76 (76)
T ss_pred             CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence            5899999999999999999999999999999999999999984  9999999999999999999999999999985

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=99.92  E-value=3.9e-25  Score=181.16  Aligned_cols=73  Identities=27%  Similarity=0.436  Sum_probs=69.2

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~d  150 (450)
                      ||+|+|+++|+|+||+|+||+|+|+||||||+||++++|++++.  ||+++ ++++.++||.|||+||+||++|+.
T Consensus         1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~~~~i~ql~kQL~KL~dV~~V~~   75 (76)
T PRK11152          1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-ASERPIDLLSSQLNKLVDVAHVEI   75 (76)
T ss_pred             CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence            68999999999999999999999999999999999999999974  88888 489999999999999999999985

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.92  E-value=2.6e-25  Score=180.98  Aligned_cols=75  Identities=47%  Similarity=0.753  Sum_probs=70.8

Q ss_pred             hhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 013068          158 ERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (450)
Q Consensus       158 ~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg  232 (450)
                      +||||||||++++++|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||++||.||
T Consensus         1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg   75 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG   75 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred             CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence            599999999998899999999999999999999999999999999999999999999999999999999999997

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.89  E-value=4.4e-23  Score=162.54  Aligned_cols=63  Identities=59%  Similarity=0.920  Sum_probs=59.2

Q ss_pred             ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      |+||+|+||+++|+||||||+||+|+++++++++||||++.|+++.++||.+||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999999999999999999999999999999999987

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=99.81  E-value=5.1e-20  Score=145.16  Aligned_cols=61  Identities=56%  Similarity=0.950  Sum_probs=56.1

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEE
Q 013068           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (450)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V  148 (450)
                      |+||+|+||+++|+||||||+||+++++++++.  |||+++|+++.++||.+||+||+||++|
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V   63 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV   63 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence            899999999999999999999999999999985  9999999999999999999999999987

>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain)

Probab=99.47  E-value=3.5e-14  Score=115.78  Aligned_cols=55  Identities=42%  Similarity=0.623  Sum_probs=48.2

Q ss_pred             HHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068          395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSL  449 (450)
Q Consensus       395 ~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L  449 (450)
                      +||||||||+++..+|.+|++|++.|+|+|+|++++++++|+||+++|+ +|++.|
T Consensus         1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l   56 (75)
T PF10369_consen    1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLL   56 (75)
T ss_dssp             EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHS
T ss_pred             CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHh
Confidence            5999999999999999999999999999999999999999999999988 566555

Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=99.04  E-value=7.1e-10  Score=92.28  Aligned_cols=77  Identities=23%  Similarity=0.309  Sum_probs=72.8

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      ||.|.|.+.+..+||.|.||.++-++|||-+.++++.+.-+.+.-.|.++|+++ +.++-|..||+||.||..|+-.-
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-R~~~lL~~QLeKl~Dv~~V~i~~   77 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-RSVDLLTSQLEKLYDVAHVEITQ   77 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-CChHHHHHHHHHHccceeEEEee
Confidence            789999999999999999999999999999999999999999999999999976 69999999999999999997543

>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]

Probab=99.04  E-value=6.1e-10  Score=92.65  Aligned_cols=75  Identities=20%  Similarity=0.311  Sum_probs=69.1

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      ||+|++.+.+..+||.|.||.++-++|||-+.++++...-|.+.  +.++|++ ++.++.|..||+||.||..|+..-
T Consensus         1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~   77 (86)
T COG3978           1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQ   77 (86)
T ss_pred             CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEee
Confidence            79999999999999999999999999999999999998887776  8888987 569999999999999999998643

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.86  E-value=1.2e-08  Score=77.39  Aligned_cols=66  Identities=24%  Similarity=0.422  Sum_probs=58.4

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccC
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID  381 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLid  381 (450)
                      |+|.+.+.|+||+|.+|+++|+++|+||.++......+. ...+.++...+....+++.+.|+++.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~   66 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG   66 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence            789999999999999999999999999999999999886 555666666778889999999998764

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.83  E-value=3e-08  Score=75.20  Aligned_cols=71  Identities=55%  Similarity=0.918  Sum_probs=63.6

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      |+|.+.+.|+||+|.+|+.+|+..|+||.++...+....+..++.+.+......+++++++|.++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            79999999999999999999999999999999876535788888888875437899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.78  E-value=1.8e-08  Score=89.91  Aligned_cols=123  Identities=20%  Similarity=0.245  Sum_probs=88.6

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHH--HhhcCceeeEEEecCCc
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE--QLNKLVNVIKVEDISNE  154 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~k--QL~KLiDVi~V~dlt~~  154 (450)
                      |+-.+||+|+||+||-|..++..+...|+||..++.+.|.++|+++++|+.++..-.-|..  ..-++.||+.|+.=+  
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD--   78 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMED--   78 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecC--
Confidence            5678999999999999999999999999999999999999999999999987766555544  455666776666321  


Q ss_pred             hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeC--------ChhHHHHHHHHhccCCcEE
Q 013068          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTG--------DPGKMVAVQRNLSKFGIKE  220 (450)
Q Consensus       155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG--------~~~KIdafi~~L~~fGIlE  220 (450)
                                    .|.   -+..|++.++..  |++-+|+.-=++-        ..+.+|..++.|++-||.-
T Consensus        79 --------------~PG---~l~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~~  133 (142)
T COG4747          79 --------------VPG---GLSRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIKL  133 (142)
T ss_pred             --------------CCC---cHHHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCee
Confidence                          122   234445554432  3333333222222        3467899999999999853

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.74  E-value=4.8e-08  Score=74.02  Aligned_cols=64  Identities=28%  Similarity=0.465  Sum_probs=55.6

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHhhcCc
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLV  143 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~gde~~ieqL~kQL~KLi  143 (450)
                      |+|.+.+.|+||+|.+|+++|+++|+||.++......+. ..+.++...+....+++.+.|+++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   65 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALP   65 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHccc
Confidence            789999999999999999999999999999999988874 3455556667888999999998875

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.69  E-value=2.2e-07  Score=74.70  Aligned_cols=74  Identities=26%  Similarity=0.399  Sum_probs=64.2

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ  386 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~  386 (450)
                      -..+|.|.+.|+||+|+.|+.+++.-|.||.++++....+.+..++++.+. .+.+.++++++.|+++-+|.+|+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence            357899999999999999999999999999999999986678888888877 57789999999999999999986

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.65  E-value=1.4e-07  Score=71.19  Aligned_cols=71  Identities=25%  Similarity=0.417  Sum_probs=63.1

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      +|.+.+.|+||+|++|+.+|+.+|+||.++.+.+.+..+...+++.++..  .+++++++|+++.+|.+|..+
T Consensus         1 ~l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            36789999999999999999999999999999887656899999999653  588999999999999999764

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.62  E-value=9.4e-08  Score=99.86  Aligned_cols=73  Identities=19%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      ..+|.|++.++|+||||++|+++|+++|+||+|+...+++. +.++++|+++ .++..++++++||+||.+|.+.
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~-~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGG-EGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCC-CceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            45799999999999999999999999999999999988654 8999999998 7889999999999999998664

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.59  E-value=2e-07  Score=72.77  Aligned_cols=48  Identities=21%  Similarity=0.496  Sum_probs=42.4

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g  127 (450)
                      +.|++.++|+||+|++|+.+|+++|+||+++.+.+.++++.+.+.++.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~   49 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSD   49 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECC
Confidence            578999999999999999999999999999999888776667776743

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=98.57  E-value=5.2e-07  Score=68.41  Aligned_cols=69  Identities=59%  Similarity=0.947  Sum_probs=58.0

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEE
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKV  148 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V  148 (450)
                      |+|.+.+.|+||+|.+|+.+|+..|+||.++........+  .+.+.+......+++++++|.++-+|.+|
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v   71 (72)
T cd04878           1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV   71 (72)
T ss_pred             CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence            7899999999999999999999999999999987642233  35666653337899999999999999987

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.54  E-value=3.3e-07  Score=70.71  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=62.5

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      |.|.+.+.|+||+|++++.+|+..|.||+++...+..+.+..++.+++. .+...+++++++|+++.+|.++
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~   72 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV   72 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence            5789999999999999999999999999999887655558888988876 5777899999999999988765

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.52  E-value=4.7e-07  Score=68.63  Aligned_cols=71  Identities=24%  Similarity=0.336  Sum_probs=62.8

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      ||.+.+.|+||+|.+++.+|+..|.||.++.+.+....+...+.|.+++.  .+++++++|+++-.|.+|..+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            57889999999999999999999999999998775557888888888865  788999999999999998753

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=98.45  E-value=9.7e-07  Score=68.87  Aligned_cols=45  Identities=31%  Similarity=0.555  Sum_probs=39.2

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEE
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCIT  359 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiT  359 (450)
                      +.|++.++|+||+|++|+.+|+++|+||+|+.+.+.+++.+.|+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE
Confidence            468889999999999999999999999999999888776555553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.38  E-value=1.2e-06  Score=66.05  Aligned_cols=68  Identities=26%  Similarity=0.465  Sum_probs=57.8

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te--d~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      |.+.+.|+||+|++|+.+|+.+|+||.++.+...+  +...+++.++..  ..++++++|+++-+|.+|..+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~   71 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI   71 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            67899999999999999999999999999998765  333467777543  588999999999999999764

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK08577 hypothetical protein; Provisional

Probab=98.38  E-value=3.5e-06  Score=75.19  Aligned_cols=76  Identities=24%  Similarity=0.382  Sum_probs=66.6

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEEEEec
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      ..+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+..++.++++-  .+..++++.++|+++-+|..|...
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            3689999999999999999999999999999999887766788888877763  336799999999999999999754

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.34  E-value=4.6e-06  Score=63.53  Aligned_cols=70  Identities=34%  Similarity=0.424  Sum_probs=61.8

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d  387 (450)
                      .|.+.+.|+||+|++++.+|+..|+||.++...+. ..+..++++.+.+. +.++.+.++|++.-+|..|.-
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            47788999999999999999999999999987654 36788899999876 688999999999999999864

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.33  E-value=6e-06  Score=66.36  Aligned_cols=70  Identities=27%  Similarity=0.423  Sum_probs=56.9

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E--EEEEEeCChHHHHHHHHHhhcCceeeEEE
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L--FTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~  149 (450)
                      .-.|.|...|+||+|+.|+.+++..|.||.++++....+.+  .  +++-| .+-+.+++|++.|+++-+|.+|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-~d~~~L~~ii~~L~~i~~V~~V~   79 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-KDLEHLNQIIRKLRQIPGVISVE   79 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-SSHHHHHHHHHHHCTSTTEEEEE
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-CCHHHHHHHHHHHHCCCCeeEEE
Confidence            45899999999999999999999999999999999875333  3  44445 46779999999999999999986

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.32  E-value=5.9e-06  Score=64.80  Aligned_cols=72  Identities=25%  Similarity=0.367  Sum_probs=60.2

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChh-HHHHHHHHHhcccCEEEEEec
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDE-SIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~-~ieQI~kQL~KLidVi~V~dl  388 (450)
                      .|.+...|+||+|++|++.+++.|.||.+++... ...+..++.+++. .+.+ .+++|+++|+++-+|.+|+-+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            5889999999999999999999999999997742 2346777777775 3444 899999999999999999753

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.28  E-value=2.3e-06  Score=89.62  Aligned_cols=75  Identities=25%  Similarity=0.379  Sum_probs=65.0

Q ss_pred             cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEe-CChHHHHHHHHHhhcCceeeEE
Q 013068           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVS-GTERVLRQVVEQLNKLVNVIKV  148 (450)
Q Consensus        74 ~~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted-~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V  148 (450)
                      .+-..+|.|++.++|+||+|++|+++|+++|+||+|+...+.++ ...+.++++ .++..++++++||+||.+|...
T Consensus       343 ~~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~  419 (426)
T PRK06349        343 EEIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI  419 (426)
T ss_pred             HHhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence            34567899999999999999999999999999999999887643 235888877 7889999999999999998654

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.25  E-value=2.1e-06  Score=66.13  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=57.1

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      |-+..+|+||+|++|+.++++.|+||.++....+.  +...+.+.++..  .+++++++|.++.+|.+|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~--~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG--EIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC--CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45678999999999999999999999999876543  666666666654  788999999999999999754

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=98.25  E-value=4e-06  Score=63.54  Aligned_cols=69  Identities=30%  Similarity=0.425  Sum_probs=57.6

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te--d~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      +|.+.+.|+||+|.+++.+|+..|+||.++.+.+..  +.+.+.+.+++.  .+++++++|+++-.|.+|..+
T Consensus         1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~   71 (71)
T cd04903           1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI   71 (71)
T ss_pred             CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence            478899999999999999999999999999987643  233466767654  788999999999999998753

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=98.24  E-value=1.6e-06  Score=66.77  Aligned_cols=68  Identities=18%  Similarity=0.279  Sum_probs=56.8

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      +-+..+|+||+|++|+.++++.|+||.++....+.+.+.+.+.++..  .++.++++|.++-+|..|..+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~   69 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL   69 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence            45688999999999999999999999999876654445566666654  788999999999999999764

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.23  E-value=4e-06  Score=65.00  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=61.0

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      +-+.+.|+||+|++|+.+|+++|.||.++.+.+....+.+.+.+.++++.  ...+.+.|.++.+|++|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~--~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV--PDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC--CHHHHHHHHcCCCccEEEEEe
Confidence            45688999999999999999999999999988876778888888888743  468888999999999988763

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=98.23  E-value=5.3e-06  Score=63.95  Aligned_cols=70  Identities=26%  Similarity=0.366  Sum_probs=57.5

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted--~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~  149 (450)
                      |.|.+.+.|+||.|++++.+|++.|.||+++...+..+  ...+.+++. .+...++.++++|+++-+|..+.
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~   73 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP   73 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence            57899999999999999999999999999998865443  234666554 56788999999999998887653

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=98.23  E-value=4.3e-05  Score=72.78  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=49.9

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHh
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL  139 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL  139 (450)
                      +++...|+++=.||||..++|+++++..|.||...+...-.+.--+.+.++++...+.+|...|
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L   68 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTL   68 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHH
Confidence            4477899999999999999999999999999998887766554335556677665555555544

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=98.16  E-value=1.8e-05  Score=63.21  Aligned_cols=70  Identities=11%  Similarity=0.284  Sum_probs=60.3

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      .|.|...|++|+|+.|+.+++..|+||.++.+...   +.-++++.+. +...+++++++|.++..|.+|+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            58899999999999999999999999999998653   4455666665 5568999999999999999998764

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=98.15  E-value=2.3e-05  Score=61.40  Aligned_cols=69  Identities=22%  Similarity=0.316  Sum_probs=60.6

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      +|.+.+.|+||.|++|+.+++.-|.||.++..... ..+...+.+++. .+.+.++++++.|+++.+|.--
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~   70 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL   70 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence            47899999999999999999999999999998654 468888888887 5778899999999999998753

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=98.15  E-value=1.8e-05  Score=70.61  Aligned_cols=76  Identities=26%  Similarity=0.323  Sum_probs=62.5

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEe--CChHHHHHHHHHhhcCceeeEEEec
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVS--GTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~--gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      .-..+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+  .+++++.  ..+..+++++++|+++-+|..|...
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~  132 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR  132 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence            34578999999999999999999999999999999987655333  3555444  4346899999999999999999854

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=98.14  E-value=6.5e-06  Score=61.87  Aligned_cols=50  Identities=24%  Similarity=0.531  Sum_probs=42.1

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChHH
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERV  131 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~gde~~  131 (450)
                      |++.+.|+||.|.|++.+|+++|+||+++.+.+++ +.+++.+.++..+..
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a   51 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERA   51 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHH
Confidence            46899999999999999999999999999999887 445677777764433

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=98.13  E-value=1.6e-05  Score=62.38  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=57.1

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      .|.+.+.|+||+|++|++.+++.|.||..++..... ....  +++.+.+.+..+++|+++|.++-+|.+|+.+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~   75 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV   75 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence            578999999999999999999999999999874322 1122  4454555445999999999999999999854

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=98.12  E-value=2.9e-05  Score=56.47  Aligned_cols=69  Identities=22%  Similarity=0.385  Sum_probs=59.2

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEE
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQ  386 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~  386 (450)
                      |.+.+.|+||.+++++.+|+..++||.++...... .+...+.+.+. .+...++.+.++|.++..|.+|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            46789999999999999999999999999987654 56777777775 45678999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=98.11  E-value=2.2e-05  Score=59.72  Aligned_cols=69  Identities=28%  Similarity=0.388  Sum_probs=58.0

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d  150 (450)
                      .|.+.+.|+||+|++++.+|++.|+||.++...... +...+++.+++. ..++.+.++|++.-+|..|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~   71 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI   71 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence            477899999999999999999999999999876543 233577778776 688899999999999998864

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.07  E-value=5.7e-06  Score=68.00  Aligned_cols=73  Identities=15%  Similarity=0.218  Sum_probs=56.3

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC--hhHHHHHHHHHhcccCEEEEE
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEVQ  386 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd--~~~ieQI~kQL~KLidVi~V~  386 (450)
                      |++|++++.-.|+||++++|+++|+.+|.||..+......  +.--+.++++.+  +..++.+.+.|+++-+...+.
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMD--GYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhC--CeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            5689999999999999999999999999999999877643  444454454433  234688888888777665554

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=98.05  E-value=2.3e-05  Score=61.01  Aligned_cols=61  Identities=23%  Similarity=0.363  Sum_probs=52.1

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      .+++.+.|+||.|.+++.+|+++|+||+++...+....+...+.|.+++++  .+++.+.|.+
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~   63 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR   63 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence            578899999999999999999999999999988876788999999998654  3466666665

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.01  E-value=8.7e-06  Score=66.94  Aligned_cols=73  Identities=22%  Similarity=0.287  Sum_probs=56.9

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHhhcCceeeEEE
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~~ieqL~kQL~KLiDVi~V~  149 (450)
                      |+++++++.-.|+||++++|+++|+.+|.||..++.....+.-.++++++.+.  ..++.|.+.|+++-+...++
T Consensus         1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~   75 (90)
T PRK00194          1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK   75 (90)
T ss_pred             CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence            56999999999999999999999999999999998775332223566666543  34678888887777766655

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=98.01  E-value=1.8e-05  Score=61.27  Aligned_cols=69  Identities=23%  Similarity=0.437  Sum_probs=55.4

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      +-+...|+||.|++|+.+|+++|.||.++.+.+....+  .+.+.++++  ....+.+.|.++-+|+.|..+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~   72 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE   72 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence            45689999999999999999999999999987764333  466666653  3457888899999999888764

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=98.00  E-value=1.8e-05  Score=59.45  Aligned_cols=47  Identities=26%  Similarity=0.512  Sum_probs=39.9

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g  364 (450)
                      |++.+.|+||+|.|++.+|+++|+||+++.+.+++ .+...+-+.++.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence            46789999999999999999999999999999986 455556666653

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK04435 hypothetical protein; Provisional

Probab=97.97  E-value=8.6e-05  Score=67.75  Aligned_cols=76  Identities=26%  Similarity=0.372  Sum_probs=64.4

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-C-hhHHHHHHHHHhcccCEEEEEecC
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d-~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      +.-+|.+.+.|+||+|+.|+.++++.|.||.+++... ...+...++++++. + +..+++|+.+|+++-.|.+|+-+.
T Consensus        68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~  145 (147)
T PRK04435         68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG  145 (147)
T ss_pred             cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            5689999999999999999999999999999998742 23577778877763 3 348999999999999999998654

>PRK04435 hypothetical protein; Provisional

Probab=97.96  E-value=5.6e-05  Score=68.96  Aligned_cols=74  Identities=31%  Similarity=0.397  Sum_probs=59.7

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEE--EeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIV--V~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      .-+|.+.+.|+||+|++|+.++++.|.||.+++.....+. ..++++  +.+.+..+++|+.+|+++-.|.+|+-+.
T Consensus        69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~  145 (147)
T PRK04435         69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG  145 (147)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3489999999999999999999999999999987533222 234444  4444558999999999999999998764

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.94  E-value=3.4e-05  Score=61.60  Aligned_cols=64  Identities=20%  Similarity=0.299  Sum_probs=50.7

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecC----CCCeeEEEEEEeCChh-HHHHHHHHHhccc
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPGTDE-SIGKLVQLLHKLI  380 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te----~~~iSRiTIVV~gd~~-~ieQI~kQL~KLi  380 (450)
                      +++...|+||++++|+.+|+++|.||.++.....+    ..+.-.|++.++.... .+.++.+.|+++-
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~   70 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC   70 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999996655    3366777777765432 5777777776653

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.94  E-value=5.3e-05  Score=52.20  Aligned_cols=59  Identities=31%  Similarity=0.442  Sum_probs=50.5

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHH
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL  376 (450)
                      |++...|+||++.++++.|+++|+||.++........+..++++.+.... .++.+.++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46788999999999999999999999999998876677888999888664 677777765

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.91  E-value=4.9e-05  Score=57.68  Aligned_cols=63  Identities=22%  Similarity=0.284  Sum_probs=52.5

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecC---CCCeeEEEEEEeCCh-hHHHHHHHHHhcc
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPGTD-ESIGKLVQLLHKL  379 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te---~~~iSRiTIVV~gd~-~~ieQI~kQL~KL  379 (450)
                      |.+.+.|+||.|++|+.+++..|.||.++...+..   ..+...+.+.+...+ +.++++.+.|.+.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            45788999999999999999999999999988754   367888888877544 6788999998764

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.89  E-value=9.3e-05  Score=58.86  Aligned_cols=67  Identities=21%  Similarity=0.296  Sum_probs=56.1

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeC--ChhHHHHHHHHHhcccCEE
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLH  383 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi  383 (450)
                      +.+.++|+||.|++|...|+++|.||.+|.--|... ++-.++.|-+.|  ++..++++.+.|.+...-+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~   71 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDV   71 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCee
Confidence            566778999999999999999999999998888765 666777777788  5778999999999865533

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.88  E-value=6.2e-05  Score=58.46  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=48.2

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      |.+++.+.|+||.|.+++++|+..|+||.++...+.....-..+.+++..+ ...+++.+-|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHH
Confidence            689999999999999999999999999999987776322233455666643 356677776654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.86  E-value=0.0001  Score=58.83  Aligned_cols=70  Identities=9%  Similarity=0.268  Sum_probs=58.2

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      .|.|...|++|+|+.|+.+++..|+||.++.+... ..-.+++.+. +-..+++++++|.++-.|.+|+-+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~   71 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP   71 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence            58899999999999999999999999999998654 2212555554 4568999999999999999998653

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.85  E-value=0.00015  Score=58.56  Aligned_cols=67  Identities=22%  Similarity=0.375  Sum_probs=53.1

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC--hhHHHHHHHHHhcccC
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLID  381 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--~~~ieQI~kQL~KLid  381 (450)
                      .+|.+.+.|+||.|.+|..+|+++|+||.|+..-|..+ .....+-+-++|.  ++.++++.+.|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            46778889999999999999999999999999888754 4444444445564  6678889999988544

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.82  E-value=0.00019  Score=56.22  Aligned_cols=68  Identities=16%  Similarity=0.260  Sum_probs=55.5

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V~  149 (450)
                      +|.+.+.|+||.|++|+.+++..|.||.++...... .+.  +.+.+. .+.+.++++++.|+++-+|.--.
T Consensus         1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~~   71 (74)
T cd04887           1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS   71 (74)
T ss_pred             CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEEE
Confidence            478999999999999999999999999999986653 333  555554 46778999999999999987543

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.82  E-value=8.4e-05  Score=57.73  Aligned_cols=61  Identities=20%  Similarity=0.247  Sum_probs=48.5

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCcEEEEEEeCChHHHHHHHHHhhc
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNK  141 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te--d~~iiTIVV~gde~~ieqL~kQL~K  141 (450)
                      |.+++.+.|+||.|.+++++|++.|+||.++......  ..+.+.++++.++ ..+++.+-|++
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~   64 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE   64 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence            6899999999999999999999999999999887753  2456777776443 56666666643

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=97.81  E-value=0.00016  Score=52.55  Aligned_cols=68  Identities=24%  Similarity=0.299  Sum_probs=55.2

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~  149 (450)
                      |.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.+.++|.++-.|.+|+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~   70 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR   70 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence            46789999999999999999999999999987654 2233555554 45678999999999999998875

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.81  E-value=2.9e-05  Score=63.90  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=55.0

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhcccCEEEE
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~KLidVi~V  385 (450)
                      ++.+++...|+||++++|+++|+.+|.||..+.....  .+.-.|.+++....  ..++++.+.|++|-+-..+
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l   72 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGV   72 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999988764  34555555555443  4588888888887755443

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.81  E-value=0.00012  Score=57.73  Aligned_cols=66  Identities=17%  Similarity=0.278  Sum_probs=49.7

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEe-CChhHHHHHHHHHhcccCE
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDL  382 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidV  382 (450)
                      |++.+.|+||.|..++.++++.|.||.|+...+.. +.+...+.+.+. .++..++.|.+.|.+-..|
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~   69 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV   69 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccE
Confidence            68899999999999999999999999999888752 334444444443 2333588888888776444

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.74  E-value=0.00022  Score=57.59  Aligned_cols=65  Identities=23%  Similarity=0.395  Sum_probs=51.1

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cE--EEEEEeCC--hHHHHHHHHHhhcCce
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-AL--FTIVVSGT--ERVLRQVVEQLNKLVN  144 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~i--iTIVV~gd--e~~ieqL~kQL~KLiD  144 (450)
                      ..|.+.+.|+||.|.+|..+|+++|+||.++..-|..+. ..  +.+-+++.  +..++++.+.|++..+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~   71 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE   71 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            367788899999999999999999999999998887653 33  44445554  6778888888887433

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.72  E-value=0.00012  Score=55.54  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG  364 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g  364 (450)
                      +.+.+.|+||.|++++++|++.|+||.++...+....+..++.+.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            678999999999999999999999999998877655678888888875

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=97.70  E-value=0.00019  Score=56.67  Aligned_cols=64  Identities=11%  Similarity=0.219  Sum_probs=48.2

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CC--cE--EEEEEeCChHHHHHHHHHhhcCceee
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DK--AL--FTIVVSGTERVLRQVVEQLNKLVNVI  146 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~--~i--iTIVV~gde~~ieqL~kQL~KLiDVi  146 (450)
                      +++.+.|+||.|.+++.++++.|.||.|+...+.. +.  ..  +++.+.. +..++.|.+.|++-.+|.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~-~~~~~~i~~~L~~~~~~~   70 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD-RSKENELIEELKAKFTVV   70 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec-chHHHHHHHHHhCcccEE
Confidence            78999999999999999999999999999887652 22  33  4444433 334788888887764443

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.67  E-value=0.00014  Score=57.97  Aligned_cols=61  Identities=25%  Similarity=0.359  Sum_probs=47.4

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC----CcE--EEEEEeCCh-HHHHHHHHHhhcC
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD----KAL--FTIVVSGTE-RVLRQVVEQLNKL  142 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted----~~i--iTIVV~gde-~~ieqL~kQL~KL  142 (450)
                      |++...|+||.+++|+.+|+++|.||..+.....+.    .++  +++.++.++ ..+.++.+.|+++
T Consensus         2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l   69 (81)
T cd04869           2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL   69 (81)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence            789999999999999999999999999999865542    244  566676554 3577777766554

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.66  E-value=0.0003  Score=55.93  Aligned_cols=63  Identities=17%  Similarity=0.349  Sum_probs=51.1

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcE--EEEEEeC--ChHHHHHHHHHhhcCce
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD-KAL--FTIVVSG--TERVLRQVVEQLNKLVN  144 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted-~~i--iTIVV~g--de~~ieqL~kQL~KLiD  144 (450)
                      +.+.++|+||.|.+|...|+++|+||.+|.--|... ++.  +-|-+.+  ++..++++.+.|++..+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~   69 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTE   69 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence            567779999999999999999999999998777665 343  5555666  57789999999988654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=97.65  E-value=0.00019  Score=55.80  Aligned_cols=59  Identities=31%  Similarity=0.454  Sum_probs=45.1

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhc
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNK  141 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~K  141 (450)
                      .+++.+.|+||.|.+++.+|+++|+||.++...+....+  .+.+.+++++  .+++.+.|.+
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~   63 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRR   63 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHH
Confidence            688999999999999999999999999999887764444  3666666433  2355555544

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.64  E-value=7.2e-05  Score=61.59  Aligned_cols=69  Identities=20%  Similarity=0.298  Sum_probs=55.2

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhhcCceeeEEE
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~KLiDVi~V~  149 (450)
                      ++.+++.-.|+||++++|+++|+++|.||..+.....  .+.  ++++++.+.  ..+++|.+.|++|-+-..++
T Consensus         1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~   73 (88)
T cd04872           1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVK   73 (88)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            4789999999999999999999999999999997763  333  666777554  46888998888777655444

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.61  E-value=0.00018  Score=57.18  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhcc
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKL  379 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~KL  379 (450)
                      +|++...|+||++++|++.|+.+|.||..+........+.-.|.+.++.+.  ..++++.+.|++|
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            478899999999999999999999999999877533445555555555443  2578888777765

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=97.57  E-value=0.00045  Score=77.19  Aligned_cols=90  Identities=17%  Similarity=0.230  Sum_probs=74.0

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHH
Q 013068          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (450)
Q Consensus       294 ~~vl~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI  372 (450)
                      ..+++..|+.   +.+. .-.-.|.|.+.|++|+|+.|+.+++.-+.||.+++.. +.+.+...+.+.+. .+-+.+.+|
T Consensus       610 er~i~v~W~~---~~~~-~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~-~~~~~~~~~~~~ieV~~~~~L~~i  684 (702)
T PRK11092        610 EKFMAVEWDK---ETEQ-EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANI  684 (702)
T ss_pred             ceeEEeEECC---CCCc-eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE-EcCCCEEEEEEEEEECCHHHHHHH
Confidence            5789999972   2122 2355899999999999999999999999999999975 44457777777766 577899999


Q ss_pred             HHHHhcccCEEEEEec
Q 013068          373 VQLLHKLIDLHEVQDI  388 (450)
Q Consensus       373 ~kQL~KLidVi~V~dl  388 (450)
                      +.+|.++-+|.+|...
T Consensus       685 ~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        685 MRKIRVMPDVIKVTRN  700 (702)
T ss_pred             HHHHhCCCCcceEEEc
Confidence            9999999999999864

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.54  E-value=0.00034  Score=52.99  Aligned_cols=61  Identities=15%  Similarity=0.259  Sum_probs=46.6

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC---CcE--EEEEEeC-ChHHHHHHHHHhhcC
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KAL--FTIVVSG-TERVLRQVVEQLNKL  142 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted---~~i--iTIVV~g-de~~ieqL~kQL~KL  142 (450)
                      |.+.+.|+||.|.+|+.+++..|.||.++...+..+   .+.  +.+.+.. +...++.+++.|++.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            357889999999999999999999999999876532   332  4444443 346788888888764

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.52  E-value=0.00024  Score=53.77  Aligned_cols=46  Identities=22%  Similarity=0.315  Sum_probs=38.0

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG  127 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~g  127 (450)
                      +.+.+.|+||.|.+++++|++.|+||.++...+....+  .+.+.+++
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~   49 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED   49 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence            68899999999999999999999999999886665333  36666655

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.50  E-value=0.0007  Score=53.98  Aligned_cols=64  Identities=14%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC------ChhHHHHHHHHHhc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHK  378 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------d~~~ieQI~kQL~K  378 (450)
                      ..+.+...|+||+|.+|+++|++.|+||.+-.+..+.+.-+--.-.+.+.      +++..+++.+.|.+
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            36889999999999999999999999999999887755544444444432      24456667766654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.49  E-value=0.00028  Score=56.57  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=50.3

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh-HHHHHHHHHhccc
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE-SIGKLVQLLHKLI  380 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~-~ieQI~kQL~KLi  380 (450)
                      +++.-.|+||++++|+++|+.+|.||..++.....  +.-.|.+.+...+. .++++.+.|+++-
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~   64 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKA   64 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67888999999999999999999999999755543  55667777776554 6888888887765

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.48  E-value=0.00072  Score=51.62  Aligned_cols=49  Identities=24%  Similarity=0.447  Sum_probs=40.3

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde  129 (450)
                      .|.|.+.|+||+|.+++++|+..|+||.++.+....+....++.+.+++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~   50 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD   50 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence            5789999999999999999999999999999887765434566665443

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=97.45  E-value=0.00098  Score=50.88  Aligned_cols=59  Identities=24%  Similarity=0.376  Sum_probs=44.9

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh------hHHHHHHHHH
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD------ESIGKLVQLL  376 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~------~~ieQI~kQL  376 (450)
                      .|.+.+.|+||+|++++++|+..|.||.++.+...++  ....++.+.+.+      +..+++.+-|
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~l   66 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPERIARLEEAL   66 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999877654  555666665433      3444444444

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.39  E-value=0.00047  Score=54.79  Aligned_cols=62  Identities=15%  Similarity=0.193  Sum_probs=47.8

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhhcC
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNKL  142 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~KL  142 (450)
                      +|++.-.|+||.+++|++.|+.+|.||..+........+.  +.+.++.+.  ..++++.+.|+++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l   66 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV   66 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence            3788999999999999999999999999998775334444  555566554  2578888777654

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=97.39  E-value=0.0009  Score=45.95  Aligned_cols=57  Identities=30%  Similarity=0.425  Sum_probs=44.7

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHh
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQL  139 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL  139 (450)
                      |++...|+||.+.++++.|+++|+||.++........+  .+++.+...+ .++.++++|
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l   59 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL   59 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence            46888999999999999999999999999987765343  3667676544 666666655

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=97.38  E-value=0.0011  Score=74.60  Aligned_cols=91  Identities=20%  Similarity=0.356  Sum_probs=75.3

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHH
Q 013068          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (450)
Q Consensus       294 ~~vl~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI  372 (450)
                      +.+++..|+.   ..+. .-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++......++..|++++. .+...+.+|
T Consensus       650 eR~I~V~W~~---~~~~-~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l  725 (743)
T PRK10872        650 ERIVDAVWGE---SYSS-GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRV  725 (743)
T ss_pred             ceEEEeEecC---CCCc-eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHH
Confidence            4689999972   1122 2355899999999999999999999999999999986544468888888876 677899999


Q ss_pred             HHHHhcccCEEEEEec
Q 013068          373 VQLLHKLIDLHEVQDI  388 (450)
Q Consensus       373 ~kQL~KLidVi~V~dl  388 (450)
                      +++|.++.+|.+|...
T Consensus       726 ~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        726 LGKLNQVPDVIDARRL  741 (743)
T ss_pred             HHHHhcCCCcCeEEec
Confidence            9999999999999864

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.36  E-value=0.0011  Score=53.55  Aligned_cols=64  Identities=28%  Similarity=0.393  Sum_probs=52.5

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcC
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KL  142 (450)
                      ...|+++=.|+||++++|++.+++.|.||..+......+.-.+.+.+++++...++|.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence            4679999999999999999999999999999998877654446777888888899999988776

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=97.36  E-value=0.00048  Score=55.19  Aligned_cols=63  Identities=17%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH-HHHHHHHHhhcCce
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-VLRQVVEQLNKLVN  144 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~-~ieqL~kQL~KLiD  144 (450)
                      +++.-.|+||.+++|+++|+.+|.||..++.....+.=.+.+.++.++. .++++.+.|+++-+
T Consensus         2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~   65 (75)
T cd04870           2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAH   65 (75)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            6888999999999999999999999999975544322125556665553 67888887776543

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=97.34  E-value=0.0012  Score=73.59  Aligned_cols=88  Identities=17%  Similarity=0.242  Sum_probs=73.3

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHH
Q 013068          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (450)
Q Consensus       294 ~~vl~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI  372 (450)
                      ..+++..|+.   +.+. .-..+|.|.+.|++|+|+.|+.+++.-+.||.++++... ..+...|.+.+. .+-+.+..|
T Consensus       594 er~I~v~W~~---~~~~-~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i  668 (683)
T TIGR00691       594 EKIIEVEWNA---SKPR-RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKI  668 (683)
T ss_pred             ccEEEEEecC---CCCc-eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHH
Confidence            5789999972   1122 335699999999999999999999999999999999654 467877777775 577899999


Q ss_pred             HHHHhcccCEEEEE
Q 013068          373 VQLLHKLIDLHEVQ  386 (450)
Q Consensus       373 ~kQL~KLidVi~V~  386 (450)
                      +.+|.++-+|.+|.
T Consensus       669 i~~L~~i~~V~~v~  682 (683)
T TIGR00691       669 MLKIKTKNDVIVVK  682 (683)
T ss_pred             HHHHhCCCCceEEe
Confidence            99999999999885

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.33  E-value=0.0017  Score=52.44  Aligned_cols=64  Identities=23%  Similarity=0.408  Sum_probs=53.1

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL  379 (450)
                      ...|++.-.|+||+++++++.+++.|.||..+......  +.-.+.+.+.++++.++++.+.|+++
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~--~~f~~~~~v~~~~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLG--GRFTLIMLVSIPEDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEET--TEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEc--CeEEEEEEEEeCcccHHHHHHHHHHH
Confidence            45889999999999999999999999999999888765  44668888888888999999999886

>PRK05092 PII uridylyl-transferase; Provisional

Probab=97.32  E-value=0.011  Score=67.94  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe------CChhHHHHHHHHHhcccC
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP------GTDESIGKLVQLLHKLID  381 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~------gd~~~ieQI~kQL~KLid  381 (450)
                      ..|.|...|+||+|.+|++.|++.|+||.+..+.. .....--+-.+.+      .+++..++|.+.|.+.++
T Consensus       844 t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        844 TVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             EEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999984 4443333333333      234457788888877664

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.31  E-value=0.0012  Score=53.04  Aligned_cols=62  Identities=16%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEE-e---C----ChhHHHHHHHHHhcc
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVV-P---G----TDESIGKLVQLLHKL  379 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV-~---g----d~~~ieQI~kQL~KL  379 (450)
                      +|.+...|+||+|++|++.|++.|.||.+-.+... + +..--++.| +   |    +++..+++.+.|.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~-~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~   71 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-N-GRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV   71 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-C-CEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999988855 3 444444444 3   2    245577888887764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.30  E-value=0.0017  Score=50.23  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=45.5

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC------ChHHHHHHHHHhhc
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG------TERVLRQVVEQLNK  141 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g------de~~ieqL~kQL~K  141 (450)
                      .|.|...|+||+|++|+++|+..|+||.++.+....+....++.+.+      +++..++|.+.|.+
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~   68 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE   68 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence            57899999999999999999999999999998766543334554432      23455566666644

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.29  E-value=0.0015  Score=52.25  Aligned_cols=45  Identities=18%  Similarity=0.347  Sum_probs=36.7

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEE
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVV  125 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV  125 (450)
                      .+.|.+.|+||+|.+|+++|++.|+||.|..+...++....++.+
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v   47 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV   47 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence            578999999999999999999999999999887553322345544

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.26  E-value=0.0016  Score=52.87  Aligned_cols=64  Identities=14%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHHhcc
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKL  379 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL~KL  379 (450)
                      +|.|...|+||+|+++++.|++.|+||.+-.+..|.+...--.-.|.+++     ++..+++.+.|.+.
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~   70 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAV   70 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999887766555544554532     23455666666543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.24  E-value=0.0016  Score=59.67  Aligned_cols=77  Identities=27%  Similarity=0.362  Sum_probs=64.1

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee-ecCCCcEEEEEE--eCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG-LNVDKALFTIVV--SGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg-~ted~~iiTIVV--~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      +-+.++|++.++++.|.|+++..+.++++.||-++.-. |-+...-+||.+  ++-+..++.|+..|+|+-.|.+|+-+.
T Consensus        69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeivg  148 (150)
T COG4492          69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIVG  148 (150)
T ss_pred             cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEee
Confidence            34678999999999999999999999999999998865 333333466654  477889999999999999999998653

>COG4492 PheB ACT domain-containing protein [General function prediction only]

Probab=97.18  E-value=0.0019  Score=59.15  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=63.9

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--CChhHHHHHHHHHhcccCEEEEEec
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--GTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      +.+||++.++++.|.|+++....++++.||-++.-.-. -.|...+||.++  +-+..++.|+..|.|+..|.+|+-+
T Consensus        71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv  147 (150)
T COG4492          71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV  147 (150)
T ss_pred             eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence            56899999999999999999999999999988776532 346677777776  5667899999999999999999854

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.18  E-value=0.0032  Score=48.59  Aligned_cols=62  Identities=24%  Similarity=0.246  Sum_probs=46.0

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC------ChhHHHHHHHHHhcc
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLHKL  379 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------d~~~ieQI~kQL~KL  379 (450)
                      .|.|...|+||+|++|+++|+..|.||.++.+....+  ..-.++.+.+      +++..++|.+.|.+.
T Consensus         2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~   69 (70)
T cd04899           2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE--RAEDVFYVTDADGQPLDPERQEALRAALGEA   69 (70)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            4788999999999999999999999999999876543  4445555532      234556666666543

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=97.15  E-value=0.0023  Score=50.99  Aligned_cols=61  Identities=26%  Similarity=0.342  Sum_probs=44.8

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe-C------ChHHHHHHHHHhhc
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS-G------TERVLRQVVEQLNK  141 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV~-g------de~~ieqL~kQL~K  141 (450)
                      .+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-. =++.|. .      +++..+++.+.|.+
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999877744422 223332 1      34456666666654

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.12  E-value=0.0024  Score=51.42  Aligned_cols=62  Identities=18%  Similarity=0.249  Sum_probs=46.0

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe----C----ChHHHHHHHHHhhcC
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS----G----TERVLRQVVEQLNKL  142 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~----g----de~~ieqL~kQL~KL  142 (450)
                      .|+|+..|+||.|.+|+++|++.|.||.+-.+....+.-.-++.|.    +    +++..+++.+.|.+.
T Consensus         2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~   71 (74)
T cd04925           2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV   71 (74)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999885522212344332    1    345567777777653

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.12  E-value=0.00099  Score=60.12  Aligned_cols=60  Identities=20%  Similarity=0.402  Sum_probs=49.5

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHH
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ  374 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~k  374 (450)
                      |+-..||+++||+||=|..++..+...|+||..++.+.|.+.|+-||  +|+-. +...+..+
T Consensus         1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRm--vV~~~-d~A~~~Le   60 (142)
T COG4747           1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRM--VVDRP-DEAHSVLE   60 (142)
T ss_pred             CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEE--EcCCh-HHHHHHHH
Confidence            44568999999999999999999999999999999999999999887  45533 33444433

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.11  E-value=0.0031  Score=50.37  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=37.7

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP  363 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~  363 (450)
                      .+.|.+.|+||+|.+|+++|++.|+||.|..+.+. + +..-.++.+.
T Consensus         3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~-~~~~d~f~v~   48 (72)
T cd04926           3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-G-DMAVNVFYVT   48 (72)
T ss_pred             EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-C-CeEEEEEEEE
Confidence            57889999999999999999999999999988755 3 3455555553

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.07  E-value=0.035  Score=60.58  Aligned_cols=273  Identities=14%  Similarity=0.130  Sum_probs=160.4

Q ss_pred             EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhhhheee
Q 013068           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELML  163 (450)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaL  163 (450)
                      -+.++||.++||.+.|.+.|+||+.++.+..+.. .-+.++++.++  ++...+.|+++.+=+..    .+-.+..++++
T Consensus       277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~  350 (587)
T PRK07431        277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAK  350 (587)
T ss_pred             cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEE
Confidence            3567899999999999999999999987765432 23666665432  33344444433210000    12235678999


Q ss_pred             EEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcCCCCc
Q 013068          164 IKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTA  238 (450)
Q Consensus       164 IKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~~~~~~  238 (450)
                      |.|-...     .--..++.....++.+|.-++....-|-+.=+.+..+..++.|.+-=.++.-        +..  ...
T Consensus       351 IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~~--------~~~--~~~  420 (587)
T PRK07431        351 LSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELEDS--------QIE--INP  420 (587)
T ss_pred             EEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhccCCc--------ccc--cCc
Confidence            9887643     2234677777888888887776655666655666677777776542111110        000  000


Q ss_pred             ccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccccccCCCCCceEEEEE
Q 013068          239 PFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLS  318 (450)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~htLS  318 (450)
                      -.|+                                  ..+.-|-.+..                     ...+..-+|.
T Consensus       421 ~~~~----------------------------------~~~~~v~gIa~---------------------~~~~~~i~l~  445 (587)
T PRK07431        421 TASG----------------------------------QDEPEVRGVAL---------------------DRNQAQLAIR  445 (587)
T ss_pred             cccC----------------------------------CCCCcEEEEEc---------------------cCCEEEEEEC
Confidence            0000                                  00001111111                     1112222332


Q ss_pred             EEEeccchHHHHHHHHHhccCceeeeeeeeec-CCCCeeEEEEEEeCCh-hHHHHHHHHHhcccCEEEEEecCCChhHHH
Q 013068          319 MLVNNTPGVLNIVTGVISRRGYNIQSLAVGPA-EKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAER  396 (450)
Q Consensus       319 ilVeN~pGVL~RItgLFsRRGyNIeSLtVg~t-e~~~iSRiTIVV~gd~-~~ieQI~kQL~KLidVi~V~dlt~~~~V~R  396 (450)
                       .+.++||.++++.+++.++|.||+.++.... +..+.-.++++++.++ ....++.++|.+..+...+       .+++
T Consensus       446 -~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i-------~~~~  517 (587)
T PRK07431        446 -NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV-------EDGP  517 (587)
T ss_pred             -CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------EEeC
Confidence             4568899999999999999999999987643 3345677888888432 3455666666654443332       2445


Q ss_pred             hhheeEeecCcc-ch----HHHHHHHHhcCcEEEEecCCEEEEEE
Q 013068          397 ELILIKIAVNTA-AR----RDVLDIAKIFRARAVDVSDHTITLEV  436 (450)
Q Consensus       397 EL~LIKV~~~~~-~R----~eI~~i~~iFrakIVDvs~~si~iE~  436 (450)
                      .+++|-|--..- ++    ..+++.....+.+|.-++...+.|-+
T Consensus       518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~  562 (587)
T PRK07431        518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSC  562 (587)
T ss_pred             CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceEEEE
Confidence            677777754432 22    36777778888888888766444433

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.00  E-value=0.0059  Score=49.21  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=55.7

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChhHHHHHHHHHhcccCEEE
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHE  384 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~  384 (450)
                      +|.+.+.|+||.|.++...|+.+|+|+..|.--|... ++-..+-|-++|+++.++++.++|.+...=++
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~   71 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN   71 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence            3556668999999999999999999999999998764 44555666677888889999999988655433

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.99  E-value=0.0057  Score=54.09  Aligned_cols=73  Identities=15%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      .+.+|.+.+.|+||.|.+|...|+.+|+|+.+|.--|+.. ++-..+-|=+.|+.+.+.+++++|.+...-++|
T Consensus        40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv  113 (115)
T cd04930          40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL  113 (115)
T ss_pred             ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence            3678888889999999999999999999999999999744 444555566778777888999999886654443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.96  E-value=0.0028  Score=63.85  Aligned_cols=79  Identities=15%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             CCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-hhHHHHHHHHHhcccC----EEE
Q 013068          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLID----LHE  384 (450)
Q Consensus       310 ~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-~~~ieQI~kQL~KLid----Vi~  384 (450)
                      ..|.++.+++...|+||+.++||++|+.+|.||..++.......++-.|.+.+... ...++++...|+++-+    .+.
T Consensus         3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~   82 (286)
T PRK13011          3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFGMQWE   82 (286)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCcEEE
Confidence            46788999999999999999999999999999999999855556666676666522 2236666666655533    344


Q ss_pred             EEec
Q 013068          385 VQDI  388 (450)
Q Consensus       385 V~dl  388 (450)
                      ++..
T Consensus        83 i~~~   86 (286)
T PRK13011         83 LHDP   86 (286)
T ss_pred             Eeec
Confidence            5543

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=96.95  E-value=0.0029  Score=51.24  Aligned_cols=63  Identities=27%  Similarity=0.258  Sum_probs=47.1

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL  379 (450)
                      ..|++...|+||+.++|+++++.+|.||..+..-.....-.-||.+.++  ....+++.+.|.++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHHH
Confidence            5789999999999999999999999999999888854444545544444  33456666555543

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PRK03381 PII uridylyl-transferase; Provisional

Probab=96.94  E-value=0.027  Score=63.75  Aligned_cols=49  Identities=16%  Similarity=0.270  Sum_probs=39.7

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP  363 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~  363 (450)
                      ...|.|...|+||+|.+|+++|+..|+||.+..+... ....--.-.|.+
T Consensus       707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~~a~D~F~V~d  755 (774)
T PRK03381        707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GADVVDVFYVTG  755 (774)
T ss_pred             eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CCeEEEEEEEEC
Confidence            3689999999999999999999999999999999887 434333333444

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.93  E-value=0.0057  Score=49.74  Aligned_cols=49  Identities=16%  Similarity=0.235  Sum_probs=39.9

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP  363 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~  363 (450)
                      |.+.|...|+||++++++|.|++.|+||.+-.+-.+.+.-.--.-.|.+
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d   50 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG   50 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec
Confidence            6889999999999999999999999999998888776654444333444

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.88  E-value=0.0059  Score=49.60  Aligned_cols=61  Identities=16%  Similarity=0.304  Sum_probs=44.4

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEE-eC-----ChHHHHHHHHHhhc
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVV-SG-----TERVLRQVVEQLNK  141 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV-~g-----de~~ieqL~kQL~K  141 (450)
                      .|.|+..|+||+|.+|++.|++.|+||.+-.+..+.+.-. =++.| +.     +++..+++.+.|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~   69 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA   69 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999987755532 23333 22     22445556555543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=96.87  E-value=0.0033  Score=50.93  Aligned_cols=63  Identities=22%  Similarity=0.317  Sum_probs=47.4

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcC
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKL  142 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KL  142 (450)
                      ..|++.-.|+||..++|+++++.+|.||..+......+.-.|.+.++.+....++|.+.|+++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence            578899999999999999999999999999998773322236666665544566666655443

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.86  E-value=0.0045  Score=58.97  Aligned_cols=82  Identities=27%  Similarity=0.273  Sum_probs=67.5

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChh
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPF  393 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~  393 (450)
                      ..-||+.++|+||||..++|+.+.+|-||.-...--..+....+|-+-+.|-+ ..+.|...|+.+-.|++|+.+..-+-
T Consensus         2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~   80 (218)
T COG1707           2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEE   80 (218)
T ss_pred             cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHH
Confidence            35799999999999999999999999999875554444445888988888753 58999999999999999998877655


Q ss_pred             HHH
Q 013068          394 AER  396 (450)
Q Consensus       394 V~R  396 (450)
                      ++-
T Consensus        81 iyG   83 (218)
T COG1707          81 IYG   83 (218)
T ss_pred             HhC
Confidence            543

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.85  E-value=0.0084  Score=48.31  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=51.3

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCChHHHHHHHHHhhcCce
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGTERVLRQVVEQLNKLVN  144 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i--iTIVV~gde~~ieqL~kQL~KLiD  144 (450)
                      .|.+.+.|+||.|.+|...|+.+|+|+..|---|..... .  +=|-++|.+..++++.++|.+...
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~   68 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVA   68 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcC
Confidence            355667899999999999999999999999988876543 2  445566777778999999887654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=96.76  E-value=0.0086  Score=67.07  Aligned_cols=89  Identities=18%  Similarity=0.377  Sum_probs=74.1

Q ss_pred             cccccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHH
Q 013068          294 NQVLDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKL  372 (450)
Q Consensus       294 ~~vl~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI  372 (450)
                      ..+++..|+.-.    ++.-...|.|...|++|+|+.|+.++++-+.||.+++.... +.++.-|.+.+. .+-..+.+|
T Consensus       611 er~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i  685 (701)
T COG0317         611 ERVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRV  685 (701)
T ss_pred             ceEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECcHHHHHHH
Confidence            368999998332    33446899999999999999999999999999999999887 666666666554 477789999


Q ss_pred             HHHHhcccCEEEEEe
Q 013068          373 VQLLHKLIDLHEVQD  387 (450)
Q Consensus       373 ~kQL~KLidVi~V~d  387 (450)
                      +.||..+-+|..|..
T Consensus       686 ~~~l~~~~~V~~v~R  700 (701)
T COG0317         686 LARLKQLPDVISVRR  700 (701)
T ss_pred             HHHHhcCCCeEEEEe
Confidence            999999999999864

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=96.72  E-value=0.06  Score=61.35  Aligned_cols=65  Identities=22%  Similarity=0.302  Sum_probs=49.0

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-C---ChhHHHHHHHHHhc
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-G---TDESIGKLVQLLHK  378 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-g---d~~~ieQI~kQL~K  378 (450)
                      ...+.|...|+||+|.+|+.+|+.+|+||.+..+........--+.+... |   +++..+.|.++|.+
T Consensus       779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~  847 (850)
T TIGR01693       779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA  847 (850)
T ss_pred             eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999766444444444321 1   33556777776654

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=96.67  E-value=0.0063  Score=57.97  Aligned_cols=81  Identities=23%  Similarity=0.368  Sum_probs=64.2

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCC--CcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchh
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD--KALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted--~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~  156 (450)
                      ..-||+.++|+||+|..++|+.+.+|-||.-.......+  .+.+-+-+.|-+ ..+.|...|+..-.|+.|+.+..-+.
T Consensus         2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~   80 (218)
T COG1707           2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEE   80 (218)
T ss_pred             cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHH
Confidence            457999999999999999999999999998766544333  345666677644 67889999999999999998887555


Q ss_pred             hhhh
Q 013068          157 VERE  160 (450)
Q Consensus       157 V~RE  160 (450)
                      ++--
T Consensus        81 iyGK   84 (218)
T COG1707          81 IYGK   84 (218)
T ss_pred             HhCc
Confidence            5543

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=96.67  E-value=0.01  Score=48.28  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=39.1

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEe
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVS  126 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV~  126 (450)
                      +.|.|+..|+||++++++|+|++.|+||.+-.+-.+.+.-. =++.|.
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~   49 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT   49 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence            68999999999999999999999999999999887755433 344443

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.65  E-value=0.011  Score=50.13  Aligned_cols=66  Identities=11%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCC-CeeEEEEEEeCC-hhHHHHHHHHHhcc
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVPGT-DESIGKLVQLLHKL  379 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~-~iSRiTIVV~gd-~~~ieQI~kQL~KL  379 (450)
                      +-+|...+.|+||.|.++...|+.+|+|+.+|.--|+... .-..+-|=++|. +..+.++.+.|.+-
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~   81 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRND   81 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHH
Confidence            4677777899999999999999999999999999997543 444555556674 66788888888763

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.64  E-value=0.0051  Score=62.00  Aligned_cols=70  Identities=11%  Similarity=0.148  Sum_probs=52.8

Q ss_pred             ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEE--EEEEeCC-hHHHHHHHHHhhcCce
Q 013068           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALF--TIVVSGT-ERVLRQVVEQLNKLVN  144 (450)
Q Consensus        75 ~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~ii--TIVV~gd-e~~ieqL~kQL~KLiD  144 (450)
                      .+|.++.+++.-.|+||+.++||++|+.+|.||+.++.......+.|  ++.++.+ ....++|...|+++-+
T Consensus         3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~   75 (286)
T PRK13011          3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA   75 (286)
T ss_pred             CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999754455554  4444422 2346677766655543

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.62  E-value=0.013  Score=48.17  Aligned_cols=62  Identities=15%  Similarity=0.117  Sum_probs=46.8

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC------ChhHHHHHHHHHh
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG------TDESIGKLVQLLH  377 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g------d~~~ieQI~kQL~  377 (450)
                      .+|.|...|+||+|.+|+..|++-|.+|.+-.++.-.. ..--.-.|.+.      |++.++.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Ge-rv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGG-WFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCC-eEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            47899999999999999999999999999988876544 44444444442      3456777777764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.58  E-value=0.0037  Score=65.62  Aligned_cols=72  Identities=17%  Similarity=0.298  Sum_probs=59.6

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      -.++|.+.=+|+||++++|+.++++.|+||..+.+....+.+++.|-+++  ..-+.++++|+++-+|++|..+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            45899999999999999999999999999999999766644556666654  3456788999999999988754

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=96.56  E-value=0.08  Score=61.02  Aligned_cols=65  Identities=11%  Similarity=0.233  Sum_probs=50.0

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--C----ChhHHHHHHHHHhccc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKLI  380 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----d~~~ieQI~kQL~KLi  380 (450)
                      ..|.|...|+||+|.+|+++|++.|.||.+-.+..+ +..+--.-.|.+  |    +++..++|.+.|.+.+
T Consensus       815 T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        815 TVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999887 544444444444  2    2345677777777654

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.53  E-value=0.0059  Score=61.40  Aligned_cols=70  Identities=16%  Similarity=0.163  Sum_probs=52.4

Q ss_pred             CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC--ChhHHHHHHHHHhccc
Q 013068          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGKLVQLLHKLI  380 (450)
Q Consensus       311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--d~~~ieQI~kQL~KLi  380 (450)
                      .|+++.+++...|+||+++.|+++++.+|.||..++.......+.-.|.+.++.  ....++++...|++|-
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~   74 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA   74 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            466789999999999999999999999999999999887434455555555554  1233556665555544

>PRK03059 PII uridylyl-transferase; Provisional

Probab=96.52  E-value=0.042  Score=62.93  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC----ChhHHHHHHHHHhcccCE
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG----TDESIGKLVQLLHKLIDL  382 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g----d~~~ieQI~kQL~KLidV  382 (450)
                      ..|.|...|+||+|.+|+++|++.|+||.+-.+... +..+-- ++.|.+    +++..++|.+.|.+.++|
T Consensus       787 T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~v~D-vF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        787 YILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GERVED-TFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             EEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCEEEE-EEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999999999888877 333333 333332    345678888888876665

>PRK05007 PII uridylyl-transferase; Provisional

Probab=96.48  E-value=0.09  Score=60.51  Aligned_cols=66  Identities=15%  Similarity=0.266  Sum_probs=48.8

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-----ChhHHHHHHHHHhccc
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-----TDESIGKLVQLLHKLI  380 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-----d~~~ieQI~kQL~KLi  380 (450)
                      ...|.|...|+||+|.+|+.+|.+-|+||.+--+..- ...+--+-.|.+.     +++..+.|.++|..-+
T Consensus       808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~-gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l  878 (884)
T PRK05007        808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTI-GERVEDLFILATADRRALNEELQQELRQRLTEAL  878 (884)
T ss_pred             eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEecc-CceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999888764 4444444444442     2445667777665544

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=96.48  E-value=0.012  Score=56.27  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=80.9

Q ss_pred             c-eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccC---E-EEEE
Q 013068          312 L-RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID---L-HEVQ  386 (450)
Q Consensus       312 ~-~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLid---V-i~V~  386 (450)
                      | +...|++.-.||||++++|+++++..|.||...+......  .--|.+.+.+....+.++...|.++..   + +.++
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg--~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~   82 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE--EFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMK   82 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC--ceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEE
Confidence            5 4568999999999999999999999999999988776543  455677778887888888888877763   3 2333


Q ss_pred             ecCCChhHHHhhh-eeEeecCccchH----HHHHHHHhcCcEEEEecCCE
Q 013068          387 DITHLPFAERELI-LIKIAVNTAARR----DVLDIAKIFRARAVDVSDHT  431 (450)
Q Consensus       387 dlt~~~~V~REL~-LIKV~~~~~~R~----eI~~i~~iFrakIVDvs~~s  431 (450)
                      ......  ..+.. .+.|.+.+..|+    ++-+....++.+|.+.+.++
T Consensus        83 ~~~~~~--~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~  130 (190)
T PRK11589         83 RTTARP--RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRT  130 (190)
T ss_pred             eccccc--cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEee
Confidence            432211  23333 366766666664    55555556677777775553

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.46  E-value=0.017  Score=47.40  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=45.9

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEE-eC----ChHHHHHHHHHhh
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-SG----TERVLRQVVEQLN  140 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV-~g----de~~ieqL~kQL~  140 (450)
                      ..|.|...|+||+|.+|+.+|++-|++|.+-.++.-.+.-.  |-+.- +|    +++..+.|.++|.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            47899999999999999999999999999988876655433  43332 22    3456677777663

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.36  E-value=0.0082  Score=63.08  Aligned_cols=72  Identities=17%  Similarity=0.275  Sum_probs=60.0

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      -.|+|.+.=+|+||++++|+.++++.|+||.++.+....  +..-|+|-+++  ..-+.++++|+++.+|++|.-|
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~  408 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL  408 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence            358999999999999999999999999999999995554  66666666665  3466899999999999998754

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.35  E-value=0.026  Score=49.97  Aligned_cols=70  Identities=16%  Similarity=0.199  Sum_probs=55.0

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChHHHHHHHHHhhcCceeeE
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNKLVNVIK  147 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~gde~~ieqL~kQL~KLiDVi~  147 (450)
                      .+..|.+.+.|+||.|.+|...|+.+|+|+.+|---|.....  + +=|-+.|....+++++++|.+...-++
T Consensus        40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~k  112 (115)
T cd04930          40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVR  112 (115)
T ss_pred             ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeE
Confidence            467888888999999999999999999999999988875443  2 445566666678888888877655333

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.34  E-value=0.0087  Score=60.24  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=51.1

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeC--ChHHHHHHHHHhhcCce
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLVN  144 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~g--de~~ieqL~kQL~KLiD  144 (450)
                      .|+++.|++.-.|+||..+.|+++|+.+|.||+.++.......+.  |++.++.  ....++.|...|+++-+
T Consensus         3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~   75 (286)
T PRK06027          3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAE   75 (286)
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            466789999999999999999999999999999999887333344  4444544  12346666666655543

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.24  E-value=0.022  Score=48.32  Aligned_cols=65  Identities=12%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hHHHHHHHHHhhc
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNK  141 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~gd-e~~ieqL~kQL~K  141 (450)
                      ..+..|.+.+.|+||.|.++...|+.+|+|+.+|---|.....  + |=|-++|. +..++++.+.|.+
T Consensus        12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~   80 (90)
T cd04931          12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN   80 (90)
T ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence            3346777788999999999999999999999999998876543  2 34445554 6677777777766

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=96.18  E-value=0.013  Score=56.22  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC--ChhHHHH
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG--TDESIGK  371 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g--d~~~ieQ  371 (450)
                      |+|-+.=+|+||++.+|+.++.+.|+||.++.++..+..+-.=|.|-+++  +++.+++
T Consensus       149 ~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       149 PAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             cEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            77888889999999999999999999999999999988888888888885  4555554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.15  E-value=0.023  Score=47.06  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=46.0

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeee--ecCCCCeeEEEEEEeC----ChhHHHHHHHHHhc
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTVVPG----TDESIGKLVQLLHK  378 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg--~te~~~iSRiTIVV~g----d~~~ieQI~kQL~K  378 (450)
                      +|.|...|+||+|.+|+..|.+-|++|.+--++  .-...-+.-+-+..+|    |++..+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            588999999999999999999999999998887  4444344444443334    34556677766654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.04  E-value=0.012  Score=63.57  Aligned_cols=74  Identities=20%  Similarity=0.384  Sum_probs=59.7

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      ..++|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+.-.+++.-|+..-+.+.++|.++.+|.+|..+
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence            44677777799999999999999999999999999987766553344444555567788899999999988765

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=96.01  E-value=0.029  Score=57.64  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=56.0

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeee---ecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcc
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG---PAEKEGLSCITTVVPG-TDESIGKLVQLLHKL  379 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg---~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KL  379 (450)
                      +.++|++.+.|+||.|.+++.+++..|.||.++...   +....+...+++.++. +.+.+++|++-|++.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            457999999999999999999999999999999776   3334577888888875 466788999888764

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=95.99  E-value=0.032  Score=62.73  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=59.0

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE----EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i----iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      .-.|.|.+.|++|+|+.|+.+++..+.||.++++.... .+.    |+|.|. +-..+++|+.+|.++-+|.+|.-.
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~ieV~-~~~~L~~i~~~Lr~i~~V~~V~R~  700 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKD-GRVYSAFIRLTAR-DRVHLANIMRKIRVMPDVIKVTRN  700 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcC-CCEEEEEEEEEEC-CHHHHHHHHHHHhCCCCcceEEEc
Confidence            34899999999999999999999999999999975433 332    444454 567999999999999999999764

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.97  E-value=0.044  Score=44.82  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=49.8

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      |.+.+.|+||.|.++...|..+|+|+..|.--|... +.-..+-|-++|+...+.++.+.|.+
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            445568999999999999999999999999998754 34455556677887778888887765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.97  E-value=0.042  Score=57.30  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC---CCCeeEEEEEEe-CChhHHHHHHHHHhcccC
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKLID  381 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te---~~~iSRiTIVV~-gd~~~ieQI~kQL~KLid  381 (450)
                      ...|.|.+.|+||+|++|+.+++.-+.||.+++.....   ..+..+|.+++. .+.+.+++++++|++.=.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~g~  397 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAAGF  397 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            46999999999999999999999999999999986431   357888887776 577899999999998633

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.88  E-value=0.037  Score=43.54  Aligned_cols=60  Identities=13%  Similarity=0.179  Sum_probs=50.4

Q ss_pred             EEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhc
Q 013068          317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHK  378 (450)
Q Consensus       317 LSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~K  378 (450)
                      +++.+.++||-|.++..+++. |.||..+.-.... .+..++.+.+.. +.+.++++.++|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            467889999999999999999 9999999887655 667778888773 45789999999876

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=95.83  E-value=0.39  Score=52.56  Aligned_cols=51  Identities=25%  Similarity=0.305  Sum_probs=40.1

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLi  380 (450)
                      .++||++.|+...+++.|+|+..++.      .=-+++++|+.  +..++.++.|++-.
T Consensus       530 ~~~~gv~~ri~~aL~~~~I~v~~i~~------S~~~Is~vV~~--~~~~~av~~Lh~~f  580 (587)
T PRK07431        530 PGTPGVAARMFRALADAGINIEMIAT------SEIRTSCVVAE--DDGVKALQAVHQAF  580 (587)
T ss_pred             cCCcCHHHHHHHHHHHCCCcEEEeec------cceEEEEEEeH--HHHHHHHHHHHHHh
Confidence            48999999999999999999988882      22356777764  45788888887765

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.80  E-value=0.037  Score=45.81  Aligned_cols=61  Identities=13%  Similarity=0.187  Sum_probs=44.3

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeee--ecCCCc--EEEEEEeC----ChHHHHHHHHHhhc
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVG--LNVDKA--LFTIVVSG----TERVLRQVVEQLNK  141 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg--~ted~~--iiTIVV~g----de~~ieqL~kQL~K  141 (450)
                      .|.|...|+||.|.+|+..|.+-|++|.+--++  .-.+..  .|-+..+|    +++..+.|...|.+
T Consensus         2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~   70 (75)
T cd04896           2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE   70 (75)
T ss_pred             EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence            588999999999999999999999999998887  333332  25553333    34556666666543

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=95.77  E-value=0.1  Score=52.95  Aligned_cols=53  Identities=17%  Similarity=0.239  Sum_probs=42.6

Q ss_pred             CCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeee--ecCCCCeeEEEEE
Q 013068          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG--PAEKEGLSCITTV  361 (450)
Q Consensus       309 ~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg--~te~~~iSRiTIV  361 (450)
                      .+.|.+++|++.-.|+||+.++||++++..|.||..++.-  .....-+.|+.++
T Consensus         4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~   58 (289)
T PRK13010          4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH   58 (289)
T ss_pred             cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence            4558888999999999999999999999999999999886  2222334455555

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.72  E-value=0.048  Score=61.73  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=59.1

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEEEec
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      -.|.|.+.|++|+|+.|+.+++.-+.||.++++......+.  +++++. .+-..+.+|+.+|.++-+|.+|.-.
T Consensus       667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~  741 (743)
T PRK10872        667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL  741 (743)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence            38899999999999999999999999999999854432332  444443 4677999999999999999999764

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=95.71  E-value=0.031  Score=52.69  Aligned_cols=71  Identities=21%  Similarity=0.337  Sum_probs=60.4

Q ss_pred             EEEEEEEE--eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEE
Q 013068          314 SHTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ  386 (450)
Q Consensus       314 ~htLSilV--eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~  386 (450)
                      .+.|.+..  .+.||+|+.|+++.+.||++|..+-....|-.+-+++||++++-  .-..++.||.|+--|.+|.
T Consensus        93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~--iP~~li~el~~i~gVk~i~  165 (167)
T COG2150          93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERP--IPGDLIDELKKIDGVKKIS  165 (167)
T ss_pred             CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEecc--CCHHHHHHHhcccCceeEE
Confidence            36677776  56899999999999999999999888877777889999999853  4567889999999998886

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.70  E-value=0.025  Score=61.25  Aligned_cols=73  Identities=21%  Similarity=0.345  Sum_probs=61.1

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      .|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+..=|.|-+++  ..-+.+.++|.++.+|.+|..+
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~--~v~~~~l~~i~~~~~i~~~~~i  524 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD--PVPEEVLEELRALPGILSAKAV  524 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC--CCCHHHHHHHhcCCCcceEEEE
Confidence            378877779999999999999999999999999999877776666665654  3457888889999999988765

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.70  E-value=0.06  Score=44.04  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=47.4

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCChHHHHHHHHHhhc
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGTERVLRQVVEQLNK  141 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~gde~~ieqL~kQL~K  141 (450)
                      +.+.+.|+||.|.++...|..+|+|+..|---|.....  + +=|-+.|....++++.+.|.+
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence            45566899999999999999999999999988866543  2 455566777677777777765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.68  E-value=0.047  Score=61.16  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEe-CChHHHHHHHHHhhcCceeeEEE
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVS-GTERVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~-gde~~ieqL~kQL~KLiDVi~V~  149 (450)
                      .-.|.|.+.|++|+|+.|+.+++.-+.||.++++.... .+.  +.+.+. .+-..+..|+.+|.++-+|.+|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~-~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~  682 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG-KREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK  682 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence            34899999999999999999999999999999986543 233  444333 46779999999999999999885

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.63  E-value=0.047  Score=45.21  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEE-EeC----ChHHHHHHHHHhhcC
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIV-VSG----TERVLRQVVEQLNKL  142 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIV-V~g----de~~ieqL~kQL~KL  142 (450)
                      .+.|...|+||.|.+|+..|++.|++|.+-.++...+...  |-|. .+|    ++...+.|.+.|...
T Consensus         3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999887665543  4442 223    566677777777543

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.61  E-value=0.029  Score=53.91  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeC--ChHHHHH
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSG--TERVLRQ  134 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~g--de~~ieq  134 (450)
                      ..|.|-+.=.|+||++.+|+.+|.+.|+||.++.++..+..+  +|.|.+++  +++.+++
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~  207 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA  207 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence            347888888999999999999999999999999999877555  46677764  3444443

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK11899 prephenate dehydratase; Provisional

Probab=95.60  E-value=0.069  Score=53.90  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=56.4

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEE
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPG--TDESIGKLVQLLHKLIDLHE  384 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~  384 (450)
                      +-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+. .++-..+-|-+.|  ++..+.+..++|.++-.-++
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~k  267 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVR  267 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEE
Confidence            55677777999999999999999999999999999985 4566676677777  45568888888877554333

>PRK04374 PII uridylyl-transferase; Provisional

Probab=95.51  E-value=0.33  Score=55.97  Aligned_cols=65  Identities=14%  Similarity=0.210  Sum_probs=47.4

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--C---ChhHHHHHHHHHhccc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G---TDESIGKLVQLLHKLI  380 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g---d~~~ieQI~kQL~KLi  380 (450)
                      .+|.|...|+||+|.+|++.|+..|.||.+--+... +..+--.-.|.+  |   ++...++|.++|.+.+
T Consensus       797 t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l  866 (869)
T PRK04374        797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPLSESARQALRDALCACL  866 (869)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999988888 433333333333  2   1223366777666544

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.50  E-value=0.016  Score=55.05  Aligned_cols=71  Identities=24%  Similarity=0.313  Sum_probs=52.4

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCC----eeEEEEE--EeCChhHHHHHHHHHhcccCEEEE
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG----LSCITTV--VPGTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~----iSRiTIV--V~gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      .|.+.+-++||||+++++|.+|.++|+||++|..-..-.++    +-.+.|.  ++.+ -.+.+|..+++.|-|=+.|
T Consensus        92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~l~~~f~al~~~L~v  168 (176)
T COG2716          92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISALRDAFEALCDELNV  168 (176)
T ss_pred             eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHHHHHHHHHHHHhhcc
Confidence            57899999999999999999999999999999987544443    2233333  3433 3578888888776554444

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=95.43  E-value=0.019  Score=54.54  Aligned_cols=72  Identities=21%  Similarity=0.327  Sum_probs=51.3

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc----EE----EEEEeCChHHHHHHHHHhhcCceeeEE
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA----LF----TIVVSGTERVLRQVVEQLNKLVNVIKV  148 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~----ii----TIVV~gde~~ieqL~kQL~KLiDVi~V  148 (450)
                      -.-+.+.+-+.|+||.+++++.+|.++|+||++|.+-....++    .+    ++-+.. -..+.+|..+++.|-|=+.|
T Consensus        90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~L~v  168 (176)
T COG2716          90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDELNV  168 (176)
T ss_pred             CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHhhcc
Confidence            3457899999999999999999999999999999987544443    23    333322 23566777777666554444


Q ss_pred             E
Q 013068          149 E  149 (450)
Q Consensus       149 ~  149 (450)
                      +
T Consensus       169 ~  169 (176)
T COG2716         169 D  169 (176)
T ss_pred             e
Confidence            3

>PRK06635 aspartate kinase; Reviewed

Probab=95.40  E-value=0.14  Score=53.08  Aligned_cols=120  Identities=20%  Similarity=0.255  Sum_probs=81.8

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCC-CcEEEEEEeCChHHHHHHHHHhhcC---ceeeEEEecCCchhhhhhe
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVD-KALFTIVVSGTERVLRQVVEQLNKL---VNVIKVEDISNEPHVEREL  161 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted-~~iiTIVV~gde~~ieqL~kQL~KL---iDVi~V~dlt~~~~V~REL  161 (450)
                      ..|+||+|.||...|.+.|+||+.++.+.+++ +.-++++++.+  ..+...+.|+++   ..+..+.       +.+.+
T Consensus       270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~--~~~~a~~~L~~~~~~~~~~~i~-------~~~~i  340 (404)
T PRK06635        270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD--DLEKALELLEEVKDEIGAESVT-------YDDDI  340 (404)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH--HHHHHHHHHHHHHHHcCcceEE-------EcCCe
Confidence            67999999999999999999999998876654 34477777643  344455555553   2232232       55678


Q ss_pred             eeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068          162 MLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (450)
Q Consensus       162 aLIKV~~~-----~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~  214 (450)
                      +++.|...     +..-.++++....++..|.-++....-+-++=+.+..+..++.|.
T Consensus       341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh  398 (404)
T PRK06635        341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH  398 (404)
T ss_pred             EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence            88888532     233457888888888889877544444545555566666677664

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.35  E-value=0.076  Score=43.96  Aligned_cols=63  Identities=11%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe--C----ChhHHHHHHHHHhcc
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP--G----TDESIGKLVQLLHKL  379 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~--g----d~~~ieQI~kQL~KL  379 (450)
                      .+.|...|+||+|.+|+..|++-||+|.+-.++...+ ...-.-.+.+  |    ++...+.|.+.|...
T Consensus         3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~ge-ra~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGD-DAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCc-eEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999988887544 3444434433  3    555677777777654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06382 threonine dehydratase; Provisional

Probab=95.25  E-value=0.066  Score=55.99  Aligned_cols=66  Identities=18%  Similarity=0.329  Sum_probs=54.3

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeee----ecCCCCeeEEEEEEeCC-hhHHHHHHHHHhcc
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG----PAEKEGLSCITTVVPGT-DESIGKLVQLLHKL  379 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg----~te~~~iSRiTIVV~gd-~~~ieQI~kQL~KL  379 (450)
                      +...|.+.+.|+||.|.+++.+|...|.||.++...    +. .++...+++.++.. .+..++|.+.|++.
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~-~~~~~~v~i~vet~~~~~~~~v~~~L~~~  399 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKET-PPGFQSVTFTVNVRGQDHLDRILNALREM  399 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccC-CCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            357899999999999999999999999999999876    33 45677899988864 35567899988764

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.16  E-value=0.031  Score=60.48  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=57.4

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      .-|+|-+.-.|+||++.+|+.++++.++||.++.++..+..+.-.+++.-|+..-+.+.++|.++.+|.+|..+
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEE
Confidence            34677777789999999999999999999999999987766543333333444557778888888888888754

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=95.10  E-value=0.056  Score=54.47  Aligned_cols=64  Identities=14%  Similarity=0.142  Sum_probs=48.2

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK  378 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~K  378 (450)
                      ++|++...|+||+.++||++++.+|.||..++.--....+.--|.+.++.+.  ...+++...|+.
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            3789999999999999999999999999999888765556555666666432  245555554444

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK08198 threonine dehydratase; Provisional

Probab=95.08  E-value=0.11  Score=53.94  Aligned_cols=67  Identities=18%  Similarity=0.255  Sum_probs=56.9

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC---CCCeeEEEEEEeC-ChhHHHHHHHHHhcc
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVPG-TDESIGKLVQLLHKL  379 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te---~~~iSRiTIVV~g-d~~~ieQI~kQL~KL  379 (450)
                      +..+|++.+.|+||.|.++..+++..|.||.+++..+..   ..+...++++++. +.+.+++|.+.|++.
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            457999999999999999999999999999999987632   3578889999884 456788999998765

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=95.00  E-value=0.079  Score=43.12  Aligned_cols=56  Identities=13%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHHhcccCE
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHKLIDL  382 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL~KLidV  382 (450)
                      ..+.||++.+|.+.|++.|.|++-++.++      ..++++++.++     +.+++|.+.|+++=+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~------~~isftv~~~~~~~~~~~~~~l~~el~~~~~v   71 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE------TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV   71 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence            45789999999999999999999996522      77999998664     3789999999985444

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=94.97  E-value=0.1  Score=54.50  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=51.3

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC---CCc--EEEEEEe-CChHHHHHHHHHhhcC
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKA--LFTIVVS-GTERVLRQVVEQLNKL  142 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te---d~~--iiTIVV~-gde~~ieqL~kQL~KL  142 (450)
                      ...|.|.+.|+||+|++|+.+++..+.||.+++.....   ..+  .+.+++. .+.+.+++++++|++.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~  395 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            36899999999999999999999999999999986431   223  2444444 4677899999999875

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=94.91  E-value=0.11  Score=53.36  Aligned_cols=65  Identities=14%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee---ecCCCc--EEEEEEeC-ChHHHHHHHHHhhcC
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG---LNVDKA--LFTIVVSG-TERVLRQVVEQLNKL  142 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg---~ted~~--iiTIVV~g-de~~ieqL~kQL~KL  142 (450)
                      +.++|++.+.|+||.|.+++.++++.|.||.++...   .....+  .+++.++. +.+..++|++-|++.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~  374 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM  374 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence            456999999999999999999999999999999765   221223  36666653 456778888888653

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.89  E-value=0.075  Score=54.55  Aligned_cols=66  Identities=21%  Similarity=0.308  Sum_probs=52.4

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHhhcCce
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVN  144 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~iiTIVV~gde~~ieqL~kQL~KLiD  144 (450)
                      .-|.+.|.+.|+||.|.+|++++.+.|+||+.|-+-++.+.  |.++|.+.. ++..++..+.|++-..
T Consensus       289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~  356 (359)
T PRK06545        289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWT  356 (359)
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCc
Confidence            45899999999999999999999999999999999776544  468888874 4455666666655443

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=94.83  E-value=0.071  Score=53.75  Aligned_cols=62  Identities=15%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhhc
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK  141 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~K  141 (450)
                      ++|++.=.|+||..++||++++.+|.||..++.....+.+.  |++.++.++  ...++|...|+.
T Consensus         1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~   66 (280)
T TIGR00655         1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS   66 (280)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            36889999999999999999999999999999887655666  555666443  235566655544

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK11899 prephenate dehydratase; Provisional

Probab=94.76  E-value=0.13  Score=51.99  Aligned_cols=66  Identities=20%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHhhcCce
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVN  144 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTIVV~g--de~~ieqL~kQL~KLiD  144 (450)
                      +-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+... + + |=|-+.|  ++..+++..+.|++.-.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~  264 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSE  264 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            5667777899999999999999999999999999887654 3 2 4454555  45667777777776554

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.74  E-value=0.63  Score=43.96  Aligned_cols=136  Identities=22%  Similarity=0.228  Sum_probs=96.8

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC-hhHHHHHHHHHhcc-cCEEEEEec
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKL-IDLHEVQDI  388 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-~~~ieQI~kQL~KL-idVi~V~dl  388 (450)
                      +|+.+|.|-.+|+||=|-++..=.+.-|-||-|+.=..... .+--+.-|++.+| ++...++.+-+++. +.++++...
T Consensus         3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~   82 (170)
T COG2061           3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA   82 (170)
T ss_pred             ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence            47889999999999999999999999999998877665443 5677788888887 55667777777332 333443222


Q ss_pred             CCChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEec----------CCEEEEEEcCCchhhhhhhhc
Q 013068          389 THLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVS----------DHTITLEVNPINNICFFFDSL  449 (450)
Q Consensus       389 t~~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs----------~~si~iE~TG~~ek~~~~~~L  449 (450)
                        ..-..-...||-=-+...-+.-|-.+-.+-.|.++|++          .--++++..|.....++++.|
T Consensus        83 --~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l  151 (170)
T COG2061          83 --RLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRL  151 (170)
T ss_pred             --CcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHH
Confidence              22233344566544555667778888889999999984          235788888887755555543

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.68  E-value=0.16  Score=40.01  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=45.2

Q ss_pred             EEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEe-CChHHHHHHHHHhhc
Q 013068           82 ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVS-GTERVLRQVVEQLNK  141 (450)
Q Consensus        82 ISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~-gde~~ieqL~kQL~K  141 (450)
                      +++.+.++||.|.+++.+++. |.||-.+.-.... +.+.+.+++. .+.+.++++..+|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence            468889999999999999999 9999999876543 2234555554 234688888888865

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.60  E-value=0.069  Score=57.88  Aligned_cols=72  Identities=22%  Similarity=0.329  Sum_probs=59.9

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      |+|-+.-.|+||++.+|+.+++..++||.++.++..+..+..=|.|-+++  ..-+.+.++|.++.+|.+|..+
T Consensus       452 ~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~--~v~~~~l~~i~~~~~i~~v~~i  523 (525)
T TIGR01327       452 IMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ--PVPDEVLEEIKAIPDILSVFVV  523 (525)
T ss_pred             cEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC--CCCHHHHHHHhcCCCccEEEEE
Confidence            77877778999999999999999999999999999887777666666664  3457788888888888888765

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=94.48  E-value=0.57  Score=47.58  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=36.5

Q ss_pred             ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee
Q 013068           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG  113 (450)
Q Consensus        75 ~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg  113 (450)
                      ++|.+++|++.=.|+||+.++||++++..|.||..++..
T Consensus         5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            467788999999999999999999999999999999986

>PRK06382 threonine dehydratase; Provisional

Probab=94.46  E-value=0.14  Score=53.50  Aligned_cols=64  Identities=23%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeee----ecCC-CcEEEEEEeCC-hHHHHHHHHHhhc
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVD-KALFTIVVSGT-ERVLRQVVEQLNK  141 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg----~ted-~~iiTIVV~gd-e~~ieqL~kQL~K  141 (450)
                      ++..|.|.+.|+||.|.+++.+|...|.||.++...    +.+. ...+++.++.. .+..++|.+.|++
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~  398 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALRE  398 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999875    3322 22467777643 3455688888865

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=94.39  E-value=0.17  Score=41.17  Aligned_cols=57  Identities=16%  Similarity=0.346  Sum_probs=44.4

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHhhcCceee
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNKLVNVI  146 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde-----~~ieqL~kQL~KLiDVi  146 (450)
                      ..+.||++.+|.+.|++.|+|++-++.+.    .-+.+++..++     +.+++|.+.|+++-+|.
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v~   72 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRVK   72 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEEE
Confidence            46789999999999999999999997522    34777776543     37889999999855443

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=94.37  E-value=0.17  Score=40.61  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-----hHHHHHHHHHhc
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-----ESIGKLVQLLHK  378 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-----~~ieQI~kQL~K  378 (450)
                      ..+.||++.|+...+++.|+|++.++.++      .+++++++.++     +.+..|.+-|+|
T Consensus        11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~------~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE------VSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCccHHHHHHHHHHHcCCeEEEEEcCC------cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            46789999999999999999999986422      77999998655     478899999999

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.32  E-value=1.3  Score=41.83  Aligned_cols=137  Identities=22%  Similarity=0.261  Sum_probs=93.2

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCC-hHHHHHHHHHhhc-CceeeEEEe
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLNK-LVNVIKVED  150 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i--iTIVV~gd-e~~ieqL~kQL~K-LiDVi~V~d  150 (450)
                      .+|+.++.|-.+|+||=|-++..=++.-|-||-++.=...+..+ +  +.|++.+| +.....+.+-+++ =+.++++..
T Consensus         2 ~~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg   81 (170)
T COG2061           2 FQMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDG   81 (170)
T ss_pred             cceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecC
Confidence            46899999999999999999999999999999988766554422 3  77788777 5556666666632 244444432


Q ss_pred             cCCchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEec--------CCE--EEEEEeCChhHHHHHHHHhcc
Q 013068          151 ISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS--------EHA--LTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       151 lt~~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs--------~~s--l~iEvTG~~~KIdafi~~L~~  215 (450)
                      ..  ...+-...||-=-+...-+.-|-.+-.+=+|.|||++        +.+  ++|+..| .+|++..++.|+.
T Consensus        82 ~~--~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e  153 (170)
T COG2061          82 AR--LREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE  153 (170)
T ss_pred             cC--cceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence            22  1222334555444455567778888888899999984        233  4555544 5777777777664

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.31  E-value=0.12  Score=53.13  Aligned_cols=65  Identities=25%  Similarity=0.324  Sum_probs=49.2

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC--CCeeEEEEEEeCChhHHHHHHHHHhcccC
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EGLSCITTVVPGTDESIGKLVQLLHKLID  381 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~--~~iSRiTIVV~gd~~~ieQI~kQL~KLid  381 (450)
                      -|.|.+.+.|+||.|.+++.++.+.|+||+.|.+-++..  .++-|+++--.   +..++..+.|.+-..
T Consensus       290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~  356 (359)
T PRK06545        290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKNE---EDRERAKALLEEFWT  356 (359)
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCCH---HHHHHHHHHHHhcCc
Confidence            489999999999999999999999999999999987643  35655555433   445555555555433

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=94.29  E-value=0.11  Score=39.68  Aligned_cols=55  Identities=22%  Similarity=0.391  Sum_probs=39.2

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      +.|+||++.++...+++.|.||+.+..+..+.. -.+++++++.+  ..+++.+.|++
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~~--d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPKS--DLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecHH--HHHHHHHHHHH
Confidence            478999999999999999999998876654332 34577777643  34444444444

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.27  E-value=0.22  Score=41.00  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=57.3

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-C-hhHHHHHHHHHhcccCEEEEEecCCCh
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-T-DESIGKLVQLLHKLIDLHEVQDITHLP  392 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d-~~~ieQI~kQL~KLidVi~V~dlt~~~  392 (450)
                      .++.+.+.++||-|.+++.+++  |-||..+.-..... +..++.+++.. + .+.++++.+.|++.=  .++.++++.+
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~-~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~   76 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADE-KDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDE   76 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCC-CeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCH
Confidence            4688999999999999999999  77888766655443 66778887774 3 478999999998754  2556677665


Q ss_pred             hHH
Q 013068          393 FAE  395 (450)
Q Consensus       393 ~V~  395 (450)
                      ...
T Consensus        77 ~~~   79 (85)
T cd04906          77 LAK   79 (85)
T ss_pred             HHH
Confidence            543

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=94.27  E-value=0.22  Score=56.15  Aligned_cols=73  Identities=27%  Similarity=0.334  Sum_probs=60.9

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeec-CCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLN-VDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~t-ed~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~d  150 (450)
                      .-...|.|...|++|+|+.|+.++++-+.||.+++.... .+...  |+|.|. +-..+..|+.+|..+-+|..|..
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-n~~~L~~i~~~l~~~~~V~~v~R  700 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-NLNHLGRVLARLKQLPDVISVRR  700 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-cHHHHHHHHHHHhcCCCeEEEEe
Confidence            446789999999999999999999999999999998876 22222  555554 67799999999999999999864

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.18  E-value=0.056  Score=44.93  Aligned_cols=64  Identities=23%  Similarity=0.335  Sum_probs=49.2

Q ss_pred             EEEEEec-cchHHHHHHHHHhccCceeeeeeeee-------cCCCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068          317 LSMLVNN-TPGVLNIVTGVISRRGYNIQSLAVGP-------AEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (450)
Q Consensus       317 LSilVeN-~pGVL~RItgLFsRRGyNIeSLtVg~-------te~~~iSRiTIVV~gd~~~ieQI~kQL~KLi  380 (450)
                      ++++-.+ ++|.+++|+.+++.+|.||+.|.-=.       ...+...-|.+.+.+.+...+.+.++|.++-
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la   73 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA   73 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence            6778888 99999999999999999999887621       1122455677778887777888888887653

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.02  E-value=0.05  Score=45.20  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             EEEEEcC-chhHHHHHHHHHhccCceeeeEeeeecCC---------Cc-EEEEEEeCChHHHHHHHHHhhcCce
Q 013068           82 ISVFVGD-ESGIINRIAGVFARRGYNIESLAVGLNVD---------KA-LFTIVVSGTERVLRQVVEQLNKLVN  144 (450)
Q Consensus        82 ISVlVeN-~pGVL~RIagLFsRRGyNIeSLsvg~ted---------~~-iiTIVV~gde~~ieqL~kQL~KLiD  144 (450)
                      ++++-.+ ++|.+++|+.+++.+|+||+.+.-- +..         +- .|.+.+++++...+.|.++|.++-.
T Consensus         2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~   74 (84)
T cd04871           2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELAS   74 (84)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            6788888 9999999999999999999988762 111         22 3677788877778888888766543

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=93.86  E-value=0.14  Score=41.66  Aligned_cols=56  Identities=14%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh----HHH-HHHHHHhcccCE
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE----SIG-KLVQLLHKLIDL  382 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~----~ie-QI~kQL~KLidV  382 (450)
                      +.+.||++.+|...|++.|+||+-++.++      ..++++++.++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~------~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE------ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC------CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            56889999999999999999999997522      669999987653    244 688888885444

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.82  E-value=0.33  Score=49.39  Aligned_cols=75  Identities=23%  Similarity=0.402  Sum_probs=59.1

Q ss_pred             CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEEE
Q 013068          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~V  385 (450)
                      +..+.+|.+.+.|+||.|.++.+.|+.||+|+..|..-|+.. ++-..+-|=+.|  ++..+.+..+-|.++-..+++
T Consensus       191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki  268 (279)
T COG0077         191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI  268 (279)
T ss_pred             CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence            445788999999999999999999999999999999999874 566666666665  444577777777766665554

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.76  E-value=0.27  Score=50.01  Aligned_cols=72  Identities=19%  Similarity=0.384  Sum_probs=55.3

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEE--EEeCChHHHHHHHHHhhcCceeeEE
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTI--VVSGTERVLRQVVEQLNKLVNVIKV  148 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTI--VV~gde~~ieqL~kQL~KLiDVi~V  148 (450)
                      ..+..|.+.+.|+||.|.++.+.|+.||+|...|---|+... + . |-|  .-+.++..+++..+-|.+.-..+++
T Consensus       192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki  268 (279)
T COG0077         192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI  268 (279)
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence            357788899999999999999999999999999998887744 3 2 444  3445566677777777776665544

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=93.73  E-value=0.24  Score=36.01  Aligned_cols=42  Identities=19%  Similarity=0.352  Sum_probs=33.6

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeC
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSG  127 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~g  127 (450)
                      +.|.||++.++.+.|.+.|+||+.++.+...+. ..++++++.
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~   50 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK   50 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence            578999999999999999999999988764432 236777753

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=93.72  E-value=0.62  Score=48.26  Aligned_cols=129  Identities=17%  Similarity=0.225  Sum_probs=88.3

Q ss_pred             EEEEEEE---EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068           79 RHTISVF---VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (450)
Q Consensus        79 ~~tISVl---VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~  155 (450)
                      ...+++.   +.|+||++.|+...|.+.|+||+.++.+.++  .-++++++.  +..+++.+.|++...-....    .=
T Consensus       260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~i  331 (401)
T TIGR00656       260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLD----RV  331 (401)
T ss_pred             EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----eE
Confidence            3467777   8899999999999999999999999876543  337777753  23555555555543111111    11


Q ss_pred             hhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068          156 HVERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       156 ~V~RELaLIKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~  215 (450)
                      .+.+.+++|-|-...     .--..+++.....+.+|.-++.....+-+.=+.+..+..++.|.+
T Consensus       332 ~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh~  396 (401)
T TIGR00656       332 EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHE  396 (401)
T ss_pred             EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHHH
Confidence            266788888886542     223478888888888998887766666666666777777777754

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=93.70  E-value=0.35  Score=52.27  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             CCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCe--eEEEEEEeCChhHHHHHHHHHhcccCEEEE
Q 013068          308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGL--SCITTVVPGTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       308 ~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~i--SRiTIVV~gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      +..+..+-+|.+.+.|+||.|.++..+|..+|+|+..|.--|+....-  ..+-|-+.|+...+.++++.|.+..+.+.|
T Consensus        25 ~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~  104 (464)
T TIGR01270        25 EEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEV  104 (464)
T ss_pred             cCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhccccee
Confidence            445555667777779999999999999999999999999988755432  355566678888899999999998887666


Q ss_pred             E
Q 013068          386 Q  386 (450)
Q Consensus       386 ~  386 (450)
                      .
T Consensus       105 ~  105 (464)
T TIGR01270       105 S  105 (464)
T ss_pred             c
Confidence            4

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.64  E-value=0.12  Score=53.99  Aligned_cols=51  Identities=22%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             EEEEEEEEe-ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC
Q 013068          314 SHTLSMLVN-NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (450)
Q Consensus       314 ~htLSilVe-N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd  365 (450)
                      .|.|.+.+. |+||+|.+|+++|+++|+||.+|....+....+- +-|-+.+.
T Consensus       295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~  346 (370)
T PRK08818        295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPG  346 (370)
T ss_pred             ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEecc
Confidence            488999995 9999999999999999999999999554443333 66666643

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=93.42  E-value=0.29  Score=35.63  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=39.6

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHH
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL  376 (450)
                      +.|.||++.++...+.+.|.||+.++.++... +.-.++++++.  +..++..+.|
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~-~~~~is~~v~~--~~~~~~~~~l   60 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRG-GTTDISFTVPK--SDLEKALAIL   60 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCC-CcEEEEEEEeH--HHHHHHHHHh
Confidence            47899999999999999999999998876543 33557777763  3345544443

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08198 threonine dehydratase; Provisional

Probab=93.33  E-value=0.4  Score=49.85  Aligned_cols=66  Identities=11%  Similarity=0.179  Sum_probs=51.1

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC---CCcE--EEEEEeC-ChHHHHHHHHHhhcC
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV---DKAL--FTIVVSG-TERVLRQVVEQLNKL  142 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te---d~~i--iTIVV~g-de~~ieqL~kQL~KL  142 (450)
                      -...++++.+.|+||.|.++..+++..|.||.+++-.+..   ..+.  ++++++. +.+.+++|.+.|++.
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~  396 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA  396 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            3456999999999999999999999999999999987532   1232  6666553 445788888888664

>PRK12483 threonine dehydratase; Reviewed

Probab=93.32  E-value=2.2  Score=46.86  Aligned_cols=132  Identities=13%  Similarity=0.197  Sum_probs=91.1

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEE--EeCChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIV--V~gde~~ieqL~kQL~KLiDVi~V~dlt~~  154 (450)
                      +++.+++...++||.|.+++.+++.+  ||..+.--..... ..+.+.  +.+.+...++|++.|++.=  .++.++++.
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn  419 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD  419 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence            57899999999999999999999988  9998876542222 234444  4444444489999997643  467788887


Q ss_pred             hhh---------------hhheeeEEEeCCCCCHHHHHHHHHhcCcE--EEEec-----CCE----EEEEEeCChhHHHH
Q 013068          155 PHV---------------ERELMLIKLNGDTSTWPEIMWLVDIFRAK--VVDIS-----EHA----LTIEVTGDPGKMVA  208 (450)
Q Consensus       155 ~~V---------------~RELaLIKV~~~~~~r~eI~~l~~~frAk--IVDvs-----~~s----l~iEvTG~~~KIda  208 (450)
                      +..               .|| +|+.|..+ ++....++.++.++.+  |-..+     .+.    +=|++.  .++.+.
T Consensus       420 e~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~~  495 (521)
T PRK12483        420 ELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERAA  495 (521)
T ss_pred             HHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHHH
Confidence            653               454 46777765 6777888888888862  32211     111    336763  377789


Q ss_pred             HHHHhccCC
Q 013068          209 VQRNLSKFG  217 (450)
Q Consensus       209 fi~~L~~fG  217 (450)
                      |++.|+..|
T Consensus       496 ~~~~l~~~g  504 (521)
T PRK12483        496 LDAALAALG  504 (521)
T ss_pred             HHHHHHHCC
Confidence            999998766

>PRK11898 prephenate dehydratase; Provisional

Probab=93.23  E-value=0.48  Score=47.76  Aligned_cols=66  Identities=17%  Similarity=0.296  Sum_probs=49.1

Q ss_pred             EEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEe--CChHHHHHHHHHhhcCce
Q 013068           79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVS--GTERVLRQVVEQLNKLVN  144 (450)
Q Consensus        79 ~~tISVlVeN~-pGVL~RIagLFsRRGyNIeSLsvg~ted~--~i-iTIVV~--gde~~ieqL~kQL~KLiD  144 (450)
                      +-.|.+.+.|+ ||.|.++.+.|+++|+|+..|---|....  .+ |=+-++  .++..++++.+.|++...
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~  267 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE  267 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence            55666777665 99999999999999999999998886543  22 333334  444478888888887544

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.23  E-value=0.24  Score=51.86  Aligned_cols=52  Identities=25%  Similarity=0.391  Sum_probs=41.2

Q ss_pred             eEEEEEEEEc-CchhHHHHHHHHHhccCceeeeEeeeecCCCcE-EEEEEeCCh
Q 013068           78 KRHTISVFVG-DESGIINRIAGVFARRGYNIESLAVGLNVDKAL-FTIVVSGTE  129 (450)
Q Consensus        78 ~~~tISVlVe-N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i-iTIVV~gde  129 (450)
                      .-+.|.+.+. |+||.|.+|+++|+++|+||.+|....+..... +.|-+.+.+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~~  347 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPGS  347 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEeccc
Confidence            3578999995 999999999999999999999999955544433 666666533

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=93.11  E-value=0.31  Score=37.05  Aligned_cols=54  Identities=22%  Similarity=0.386  Sum_probs=37.5

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEeCChHHHHHHHHHhhc
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVSGTERVLRQVVEQLNK  141 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~gde~~ieqL~kQL~K  141 (450)
                      +.++||++.++...+++.|+||+.+..+..... ..+++++..  ...+.+.+.|.+
T Consensus         9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~   63 (75)
T cd04913           9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK   63 (75)
T ss_pred             CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence            578999999999999999999998876544332 246777753  233444444433

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=93.08  E-value=0.25  Score=40.15  Aligned_cols=55  Identities=11%  Similarity=0.227  Sum_probs=44.2

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--h-HHHHHHHHHhcccCE
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--E-SIGKLVQLLHKLIDL  382 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~-~ieQI~kQL~KLidV  382 (450)
                      ...||++.+|.+.|++.|.|++-++.++      ..++++++.++  + .++.|.+-|+|+-+|
T Consensus        12 ~~~~g~~~~If~~la~~~I~vd~I~~s~------~~isftv~~~~~~~~~l~~l~~el~~~~~v   69 (73)
T cd04934          12 SLSHGFLARIFAILDKYRLSVDLISTSE------VHVSMALHMENAEDTNLDAAVKDLQKLGTV   69 (73)
T ss_pred             ccccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence            4579999999999999999999997522      66899998543  3 788999999984433

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=92.87  E-value=0.5  Score=49.74  Aligned_cols=69  Identities=16%  Similarity=0.116  Sum_probs=55.2

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC--hhHHHHHHHHHhcccCE
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLIDL  382 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--~~~ieQI~kQL~KLidV  382 (450)
                      +-+|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+.. ++-..+-|=+.|.  +..+++..++|++.-.-
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~  368 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRS  368 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCc
Confidence            456777778999999999999999999999999999875 4556666667764  45688888888876553

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=92.75  E-value=0.36  Score=39.35  Aligned_cols=56  Identities=13%  Similarity=0.392  Sum_probs=42.2

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH----HHH-HHHHHhhcCcee
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER----VLR-QVVEQLNKLVNV  145 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~----~ie-qL~kQL~KLiDV  145 (450)
                      +.+.||++.+|...|++.|+||+-++.+.    .-+.+++..++.    .+. .|.+-|+|+-+|
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v   71 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV   71 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence            57889999999999999999999997522    347777775542    344 678888885444

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=92.70  E-value=0.27  Score=37.50  Aligned_cols=51  Identities=22%  Similarity=0.355  Sum_probs=40.3

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      .++||++.++...+++.|.|++.++.+.++    .++.++++.++  .++..+.|+|
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~~--~~~a~~~lh~   62 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEKD--AVKALNIIHT   62 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHHH--HHHHHHHHHH
Confidence            368999999999999999999999876643    78888998643  5555665555

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=92.69  E-value=0.3  Score=56.12  Aligned_cols=68  Identities=21%  Similarity=0.283  Sum_probs=51.2

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC----ChHHHHHHHHHhhcCcee
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG----TERVLRQVVEQLNKLVNV  145 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g----de~~ieqL~kQL~KLiDV  145 (450)
                      ....|.|...|+||+|.+|+++|++.|+||.+-.+....+.-.=++.|.+    +++..+.|.+.|.+.++|
T Consensus       785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~  856 (856)
T PRK03059        785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV  856 (856)
T ss_pred             CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            46799999999999999999999999999999888877222222333332    356677888888776654

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=92.68  E-value=0.3  Score=37.10  Aligned_cols=49  Identities=14%  Similarity=0.327  Sum_probs=39.7

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHH
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLL  376 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL  376 (450)
                      .++||+..+|..+|.+.|.|++-++.++      -.+++++..++  +.++.+.+.|
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~------~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEecCC------CEEEEEEehhhhhHHHHHHHHhh
Confidence            4679999999999999999999996422      56899998765  5677777665

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=92.66  E-value=0.57  Score=37.58  Aligned_cols=53  Identities=15%  Similarity=0.371  Sum_probs=42.8

Q ss_pred             EEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh-----HHHHHHHHHhhc
Q 013068           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE-----RVLRQVVEQLNK  141 (450)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde-----~~ieqL~kQL~K  141 (450)
                      -..+.||++.||...|++.|+|++.++.++    ..+++++..++     ..++.|.+-|+|
T Consensus        10 ~l~~~~g~~~~if~~L~~~~I~v~~i~~s~----~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          10 RMLGAHGFLAKVFEIFAKHGLSVDLISTSE----VSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCCCccHHHHHHHHHHHcCCeEEEEEcCC----cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            356789999999999999999999886422    45777777544     488899999998

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>PRK11898 prephenate dehydratase; Provisional

Probab=92.49  E-value=0.72  Score=46.50  Aligned_cols=68  Identities=21%  Similarity=0.298  Sum_probs=52.6

Q ss_pred             EEEEEEEEec-cchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChh--HHHHHHHHHhcccC
Q 013068          314 SHTLSMLVNN-TPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDE--SIGKLVQLLHKLID  381 (450)
Q Consensus       314 ~htLSilVeN-~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~--~ieQI~kQL~KLid  381 (450)
                      +-.|...+.| +||.|.++.+.|+++|+|+.+|.--|... +.-..+-+=++|+.+  .+.++.+.|++.-.
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~  267 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE  267 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence            5567777766 49999999999999999999999998754 444555555666443  68899998888654

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=92.38  E-value=0.49  Score=49.85  Aligned_cols=66  Identities=12%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeC--ChHHHHHHHHHhhcCce
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSG--TERVLRQVVEQLNKLVN  144 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~g--de~~ieqL~kQL~KLiD  144 (450)
                      +-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+....  + |=|-+.|  ++..+++..++|++...
T Consensus       297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~  367 (386)
T PRK10622        297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR  367 (386)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            66677778999999999999999999999999988877652  2 4444544  44567778787777544

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.37  E-value=0.68  Score=38.16  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             EEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEEEeC-C-hHHHHHHHHHhhcCceeeEEEecCCchh
Q 013068           80 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIVVSG-T-ERVLRQVVEQLNKLVNVIKVEDISNEPH  156 (450)
Q Consensus        80 ~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIVV~g-d-e~~ieqL~kQL~KLiDVi~V~dlt~~~~  156 (450)
                      ..+.+.+.++||-|.+++.+++  |.||..+.-.... +.+.+.+++.. + .+.++++.+.|++.=  .++.++++.+.
T Consensus         2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~   77 (85)
T cd04906           2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL   77 (85)
T ss_pred             eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence            4788999999999999999999  6788866655433 33445555542 3 467888888887633  24555666554


Q ss_pred             h
Q 013068          157 V  157 (450)
Q Consensus       157 V  157 (450)
                      .
T Consensus        78 ~   78 (85)
T cd04906          78 A   78 (85)
T ss_pred             H
Confidence            4

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=92.16  E-value=0.4  Score=35.61  Aligned_cols=51  Identities=24%  Similarity=0.388  Sum_probs=38.7

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL  379 (450)
                      ..+.||++.++.+.+++.|.|++.++..  +    .+++++++.+  ..+++.+-|+|.
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~----~~is~~v~~~--d~~~~~~~l~~~   60 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS--E----IKISCLIDED--DAEKAVRALHEA   60 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc--C----ceEEEEEeHH--HHHHHHHHHHHH
Confidence            4577999999999999999999999842  1    6688888843  355556666554

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>PRK05092 PII uridylyl-transferase; Provisional

Probab=91.90  E-value=0.54  Score=54.42  Aligned_cols=67  Identities=16%  Similarity=0.185  Sum_probs=48.8

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEE-e----CChHHHHHHHHHhhcCce
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVV-S----GTERVLRQVVEQLNKLVN  144 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV-~----gde~~ieqL~kQL~KLiD  144 (450)
                      ....|.|...|+||+|.+|+++|++.|+||.+..+....+...  |.+.- +    .++...+.|.+.|.+.++
T Consensus       842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~  915 (931)
T PRK05092        842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA  915 (931)
T ss_pred             CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999999984322222  33322 1    234456777777766653

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=91.70  E-value=1.6  Score=43.29  Aligned_cols=74  Identities=12%  Similarity=0.198  Sum_probs=60.6

Q ss_pred             eEEEEEEEEeccch--HHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEE--eC-ChhHHHHHHHHHhcccCEEEEE
Q 013068          313 RSHTLSMLVNNTPG--VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVV--PG-TDESIGKLVQLLHKLIDLHEVQ  386 (450)
Q Consensus       313 ~~htLSilVeN~pG--VL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV--~g-d~~~ieQI~kQL~KLidVi~V~  386 (450)
                      ..|.+++.+.+.++  ++.++...+...+|.+.++.+.+.++++-..|+..+  .+ ++..+++++.+|.....|.+|.
T Consensus       141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~  219 (225)
T PRK15385        141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH  219 (225)
T ss_pred             eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence            35788999988664  699999999999999999999887666655555544  43 5778999999999999999886

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=91.68  E-value=0.56  Score=35.63  Aligned_cols=50  Identities=14%  Similarity=0.402  Sum_probs=38.5

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHh
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQL  139 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~~ieqL~kQL  139 (450)
                      ..++||...+|..+|++.|+|++.++.+.    .-+++++..++  +.++.|++.|
T Consensus        10 m~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890          10 MNGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             cCcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence            34679999999999999999999996422    45777777655  5677766655

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>PRK08210 aspartate kinase I; Reviewed

Probab=91.59  E-value=3.3  Score=43.23  Aligned_cols=121  Identities=15%  Similarity=0.132  Sum_probs=78.7

Q ss_pred             EEEEEEEEcCc-hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhh
Q 013068           79 RHTISVFVGDE-SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHV  157 (450)
Q Consensus        79 ~~tISVlVeN~-pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V  157 (450)
                      ...|+++-.|. ||.++||.+.|.+.|+||+.++.+.  +  -+++++..  ...+++.+.|+++-         ..-.+
T Consensus       271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~--~~~~~a~~~l~~~~---------~~v~~  335 (403)
T PRK08210        271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD--EDSEKAKEILENLG---------LKPSV  335 (403)
T ss_pred             cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH--HHHHHHHHHHHHhC---------CcEEE
Confidence            34566666665 9999999999999999999997762  2  34555543  33555555555531         02336


Q ss_pred             hhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068          158 ERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (450)
Q Consensus       158 ~RELaLIKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~  214 (450)
                      .+.+++|.|-...     ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh  397 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH  397 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence            6788988886532     33446777777888888876644444444445555666666654

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=91.58  E-value=0.42  Score=36.11  Aligned_cols=51  Identities=27%  Similarity=0.475  Sum_probs=39.6

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      .+.||++.||...+++.|+|++.++-+..+    -+++++++.++  .++..+.|++
T Consensus        12 ~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~~~--~~~~~~~lh~   62 (66)
T cd04922          12 AGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDEDD--ATKALRAVHE   62 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHHH--HHHHHHHHHH
Confidence            478999999999999999999999776533    77888888543  4555555554

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=91.52  E-value=0.64  Score=37.74  Aligned_cols=55  Identities=16%  Similarity=0.272  Sum_probs=41.7

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--H-HHHHHHHHhhcCcee
Q 013068           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--R-VLRQVVEQLNKLVNV  145 (450)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~-~ieqL~kQL~KLiDV  145 (450)
                      -..||.+.+|.+.|++.|+|++-++.+.    .-+.+++..++  . .++.|.+-|+|+-+|
T Consensus        12 ~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~v   69 (73)
T cd04934          12 SLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGTV   69 (73)
T ss_pred             ccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence            4569999999999999999999997522    34666666432  3 788888888885443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=91.46  E-value=0.3  Score=42.12  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=53.3

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh--HHHH----HHHHHhcccCEEEE
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGK----LVQLLHKLIDLHEV  385 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~--~ieQ----I~kQL~KLidVi~V  385 (450)
                      |++..+++.=+||||+.+.|+++++..|.||.-  ++.|--.++-.|-+.|+-+++  ....    +.+..++|=--+.|
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V~v   78 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVDVRV   78 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcEEEE
Confidence            467899999999999999999999999999975  566767788788888875432  2333    44445555433344


Q ss_pred             E
Q 013068          386 Q  386 (450)
Q Consensus       386 ~  386 (450)
                      +
T Consensus        79 q   79 (90)
T COG3830          79 Q   79 (90)
T ss_pred             e
Confidence            3

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=91.25  E-value=0.55  Score=38.94  Aligned_cols=40  Identities=15%  Similarity=0.222  Sum_probs=33.6

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD  366 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~  366 (450)
                      ..+.||++.+|...|++.|+||+-++.++      ..++++++.++
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~------~sISftV~~sd   50 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE------VSISLTLDPSK   50 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC------CEEEEEEEhhh
Confidence            35789999999999999999999997522      66999998655

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02317 arogenate dehydratase

Probab=91.20  E-value=1.1  Score=47.59  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=52.0

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCC---------------CeeEEEEEEeCC--hhHHHHHHHHH
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE---------------GLSCITTVVPGT--DESIGKLVQLL  376 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~---------------~iSRiTIVV~gd--~~~ieQI~kQL  376 (450)
                      +-.|...++|+||.|.++...|+.||+|+..|.--|.-..               .-..+-|=+.|.  +..+.+..+.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            4566666789999999999999999999999998886554               223434444554  55678888888


Q ss_pred             hcccCEEE
Q 013068          377 HKLIDLHE  384 (450)
Q Consensus       377 ~KLidVi~  384 (450)
                      .+.-.-++
T Consensus       363 ~~~~~~lr  370 (382)
T PLN02317        363 QEFATFLR  370 (382)
T ss_pred             HHhcCeEE
Confidence            77554333

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=91.15  E-value=1.1  Score=48.16  Aligned_cols=65  Identities=15%  Similarity=0.305  Sum_probs=51.3

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--E-EEEEEeCC-hHHHHHHHHHhhcCc
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--L-FTIVVSGT-ERVLRQVVEQLNKLV  143 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--i-iTIVV~gd-e~~ieqL~kQL~KLi  143 (450)
                      +..|.+.+.|+||.|.+|..+|+.+|+|+..|---|+....  . +=|-+.|. +..++++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            56788888999999999999999999999999988765442  2 34445554 467888888888866

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=91.05  E-value=0.62  Score=53.07  Aligned_cols=63  Identities=19%  Similarity=0.329  Sum_probs=45.8

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC---ChhHHHHHHHHHhcc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG---TDESIGKLVQLLHKL  379 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g---d~~~ieQI~kQL~KL  379 (450)
                      -.+.|...|+||++++|+|+|++.|+||.+-.+-.  ..+..=.++.|.+   .....+++.+.|++.
T Consensus       600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~  665 (774)
T PRK03381        600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRA  665 (774)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHH
Confidence            47899999999999999999999999999988874  4444445555543   212245566665544

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=91.00  E-value=0.48  Score=35.81  Aligned_cols=51  Identities=29%  Similarity=0.381  Sum_probs=39.0

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      .+.||++.|+...+++.|.|++.++.+.++    .+++++++.++  .++..+.|+|
T Consensus        12 ~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~----~~isf~v~~~d--~~~~~~~lh~   62 (66)
T cd04916          12 KNTVGVSARATAALAKAGINIRMINQGSSE----ISIMIGVHNED--ADKAVKAIYE   62 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHHH--HHHHHHHHHH
Confidence            468999999999999999999999876643    56888888543  4555555554

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=90.87  E-value=0.74  Score=52.73  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC------hhHHHHHHHHHhccc
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT------DESIGKLVQLLHKLI  380 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd------~~~ieQI~kQL~KLi  380 (450)
                      ...|.|...|+||+|.+|++.|++.|+||.+-.+..|.+.-+--.-.|.+.+      ++..++|.+.|.+.+
T Consensus       668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L  740 (850)
T TIGR01693       668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVL  740 (850)
T ss_pred             eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999999999988776555544444322      223555665555444

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=90.68  E-value=0.5  Score=35.59  Aligned_cols=52  Identities=29%  Similarity=0.385  Sum_probs=39.8

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL  379 (450)
                      .+.||++.++...+++.|+|++-++.+..+    -+++++++.+  ..++..+-|++.
T Consensus        12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~----~~isf~i~~~--~~~~~~~~Lh~~   63 (66)
T cd04924          12 RGTPGVAGRVFGALGKAGINVIMISQGSSE----YNISFVVAED--DGWAAVKAVHDE   63 (66)
T ss_pred             CCCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHHH
Confidence            467999999999999999999999876643    5677888743  355556666554

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=90.45  E-value=1.2  Score=47.89  Aligned_cols=67  Identities=12%  Similarity=0.199  Sum_probs=53.4

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC-hhHHHHHHHHHhccc
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI  380 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-~~~ieQI~kQL~KLi  380 (450)
                      +.+|.+.+.|+||.|.++..+|+.+|+|+..|.--|+.. +.-..+-|-++|. +..+.++++.|.+..
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~   84 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA   84 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence            467777779999999999999999999999999988754 3333445556665 467889999998876

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK05007 PII uridylyl-transferase; Provisional

Probab=90.33  E-value=0.9  Score=52.54  Aligned_cols=66  Identities=9%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHHhccc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKLI  380 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL~KLi  380 (450)
                      ..+.|...|+||+|++|+++|++.|+||.+-.+..+.+.-.--.-.|.+.+     ++.+++|.+.|.+.+
T Consensus       702 t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL  772 (884)
T PRK05007        702 TEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL  772 (884)
T ss_pred             EEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence            488999999999999999999999999999998888664444444444322     245566677666544

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=90.06  E-value=1.3  Score=47.96  Aligned_cols=73  Identities=21%  Similarity=0.231  Sum_probs=57.5

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--c-E-EEEEEeCChHHHHHHHHHhhcCceeeEEE
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--A-L-FTIVVSGTERVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~-i-iTIVV~gde~~ieqL~kQL~KLiDVi~V~  149 (450)
                      ..+-.|.+.+.|+||.|.++..+|+.+|+|+..|---++...  . . +=|-+.+....++++++.|.+..+.+.|.
T Consensus        29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~  105 (464)
T TIGR01270        29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS  105 (464)
T ss_pred             CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence            345567777799999999999999999999999988776533  2 3 44556677778899999998888876664

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=90.03  E-value=0.98  Score=42.84  Aligned_cols=73  Identities=21%  Similarity=0.339  Sum_probs=57.4

Q ss_pred             cceEEEEEEEE--cCchhHHHHHHHHHhccCceeeeEeeeec--CCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068           76 KVKRHTISVFV--GDESGIINRIAGVFARRGYNIESLAVGLN--VDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (450)
Q Consensus        76 ~~~~~tISVlV--eN~pGVL~RIagLFsRRGyNIeSLsvg~t--ed~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d  150 (450)
                      .|-.+.|.++.  .+.||+|+.|+++.+.||++|..+-....  .+...+||++++  .....|+.||.|+--|.+|.-
T Consensus        90 ~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~I  166 (167)
T COG2150          90 LLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKISI  166 (167)
T ss_pred             hcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEEe
Confidence            45667888887  46899999999999999999998877644  344578998864  345568899999998888763

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=89.48  E-value=2  Score=31.75  Aligned_cols=50  Identities=16%  Similarity=0.330  Sum_probs=36.0

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K  141 (450)
                      ..+.||++.|+.+.+++.|+|++.++..    +..+++++...  ..+++.+-|+|
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~~--d~~~~~~~l~~   59 (63)
T cd04936          10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDED--DAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeHH--HHHHHHHHHHH
Confidence            4578999999999999999999999842    24577888643  33444444443

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=89.33  E-value=6.4  Score=42.49  Aligned_cols=127  Identities=20%  Similarity=0.281  Sum_probs=90.0

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh--HHHHHHHHHhhcCceeeEEEecCCch
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE--RVLRQVVEQLNKLVNVIKVEDISNEP  155 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde--~~ieqL~kQL~KLiDVi~V~dlt~~~  155 (450)
                      +-+.-......++|++.||.+.+++.|+|++-+..+.++..  +++++.+++  ...+.|.+....+..  .+       
T Consensus       309 ~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~--~v-------  377 (447)
T COG0527         309 LITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA--EV-------  377 (447)
T ss_pred             EEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc--eE-------
Confidence            33444455556679999999999999999999988776665  788777544  233333333332332  22       


Q ss_pred             hhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068          156 HVERELMLIKLNGDT-----STWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       156 ~V~RELaLIKV~~~~-----~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~  215 (450)
                      .+++.+++|-+--..     .--..+++-...++-+|.-++...+.|-+.=+.+..+..++.|..
T Consensus       378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH~  442 (447)
T COG0527         378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALHE  442 (447)
T ss_pred             EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHHH
Confidence            267788888885443     334578888899999999999777888887788888887777753

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=89.28  E-value=1.1  Score=51.65  Aligned_cols=67  Identities=12%  Similarity=0.088  Sum_probs=50.1

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHHhcccC
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHKLID  381 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL~KLid  381 (450)
                      -.+.|...|+||+|++|+|.|++.|+||.+=.+..+.+.-+--.-.|.+.+     ++.+++|.+.|.+.++
T Consensus       678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~  749 (854)
T PRK01759        678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALN  749 (854)
T ss_pred             EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            488999999999999999999999999999888776665554444444322     3456667777766554

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=89.18  E-value=1.6  Score=45.32  Aligned_cols=106  Identities=13%  Similarity=0.185  Sum_probs=71.9

Q ss_pred             EEEEEE---EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068          315 HTLSML---VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (450)
Q Consensus       315 htLSil---VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~  391 (450)
                      ..+++.   +.|+||++.|+...|.+.|+||+.++.+.++    ..++++++.  +..+++.+.|++...-....    .
T Consensus       261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~----~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~  330 (401)
T TIGR00656       261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE----TSISLTVDE--TDADEAVRALKDQSGAAGLD----R  330 (401)
T ss_pred             EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC----ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----e
Confidence            356666   6899999999999999999999999887654    447888863  34666666676653211111    1


Q ss_pred             hhHHHhhheeEeecCcc-c----hHHHHHHHHhcCcEEEEecCC
Q 013068          392 PFAERELILIKIAVNTA-A----RRDVLDIAKIFRARAVDVSDH  430 (450)
Q Consensus       392 ~~V~REL~LIKV~~~~~-~----R~eI~~i~~iFrakIVDvs~~  430 (450)
                      -.+.+.+++|-|-...- +    -..+++.....+.+|.-++..
T Consensus       331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s  374 (401)
T TIGR00656       331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSS  374 (401)
T ss_pred             EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC
Confidence            12566778887765432 2    246777777778888777644

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=89.08  E-value=0.76  Score=36.26  Aligned_cols=46  Identities=26%  Similarity=0.420  Sum_probs=35.7

Q ss_pred             ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHh
Q 013068          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH  377 (450)
Q Consensus       323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~  377 (450)
                      +.||++++++..++.-|+||.-++       ...++.+.|+.+  .+++..+-|+
T Consensus        19 ~~~Gv~a~i~~~La~~~I~i~~is-------S~~~~~ilV~~~--~~~~A~~~L~   64 (65)
T PF13840_consen   19 DVPGVAAKIFSALAEAGINIFMIS-------SEISISILVKEE--DLEKAVEALH   64 (65)
T ss_dssp             TSHHHHHHHHHHHHHTTS-ECEEE-------ESSEEEEEEEGG--GHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHCCCCEEEEE-------EeeeEEEEEeHH--HHHHHHHHhc
Confidence            599999999999999999998887       335678888744  4677666665

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=88.70  E-value=1.3  Score=36.65  Aligned_cols=40  Identities=10%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde  129 (450)
                      ..+.||++.+|...|++.|+||+-++.+.    .-+.+++..++
T Consensus        11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd   50 (78)
T cd04933          11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSK   50 (78)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhh
Confidence            46789999999999999999999997522    34777776544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02550 threonine dehydratase

Probab=88.54  E-value=12  Score=42.03  Aligned_cols=135  Identities=17%  Similarity=0.289  Sum_probs=91.2

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEEe-CChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE  154 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~dlt~~  154 (450)
                      ..++.+.+.+-++||.|.+++.++..+  ||-.+.--..... ..+.+.+. .+.+.+++|+..|++.=  ..+.|+++.
T Consensus       415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~  490 (591)
T PLN02550        415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN  490 (591)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence            456789999999999999999999987  9998877653222 23444443 24668999999998744  578888886


Q ss_pred             hhhhh-------h------eeeEEEeCCCCCHHHHHHHHHhcCcE--EEEe----c--CC---EEEEEEeCChhHHHHHH
Q 013068          155 PHVER-------E------LMLIKLNGDTSTWPEIMWLVDIFRAK--VVDI----S--EH---ALTIEVTGDPGKMVAVQ  210 (450)
Q Consensus       155 ~~V~R-------E------LaLIKV~~~~~~r~eI~~l~~~frAk--IVDv----s--~~---sl~iEvTG~~~KIdafi  210 (450)
                      +...-       |      =+|+.|..+ +......+.++.++.+  |-..    +  ..   .+-||+.  +++++.|+
T Consensus       491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l~  567 (591)
T PLN02550        491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEFK  567 (591)
T ss_pred             hHHhhhhhheeccccccCceEEEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHHH
Confidence            65421       1      135666555 5666777777777763  2221    0  11   1346775  47888888


Q ss_pred             HHhccCCc
Q 013068          211 RNLSKFGI  218 (450)
Q Consensus       211 ~~L~~fGI  218 (450)
                      +.|+..|.
T Consensus       568 ~~l~~~gy  575 (591)
T PLN02550        568 SRANALGY  575 (591)
T ss_pred             HHHHHcCC
Confidence            88887764

>PLN02317 arogenate dehydratase

Probab=88.52  E-value=2.2  Score=45.21  Aligned_cols=66  Identities=14%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC----------------cE-EEEEEeC--ChHHHHHHHHHh
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK----------------AL-FTIVVSG--TERVLRQVVEQL  139 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~----------------~i-iTIVV~g--de~~ieqL~kQL  139 (450)
                      +-.|.+.++|+||.|.++...|+.||+|+..|---|....                .+ |=|-+.+  .+..+++..+.|
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L  362 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL  362 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence            4566677799999999999999999999999988775443                22 3333344  356677777777


Q ss_pred             hcCce
Q 013068          140 NKLVN  144 (450)
Q Consensus       140 ~KLiD  144 (450)
                      .+...
T Consensus       363 ~~~~~  367 (382)
T PLN02317        363 QEFAT  367 (382)
T ss_pred             HHhcC
Confidence            66544

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=88.44  E-value=1.3  Score=51.25  Aligned_cols=66  Identities=8%  Similarity=0.241  Sum_probs=48.3

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe---C----ChHHHHHHHHHhhcCc
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS---G----TERVLRQVVEQLNKLV  143 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~---g----de~~ieqL~kQL~KLi  143 (450)
                      ....|.|+..|+||+|.+|+++|++.|.||.+-.+..+.+...=++.|.   |    +++..+.|.+.|.+.+
T Consensus       813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L  885 (895)
T PRK00275        813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL  885 (895)
T ss_pred             CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999987733322233332   2    2345666777775544

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=88.28  E-value=1.1  Score=35.53  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd  365 (450)
                      ..|.||++++|.+.++++|.||+-++.. .+     .++++++.+
T Consensus         9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~-----~isFtv~~~   47 (67)
T cd04914           9 KDNENDLQQRVFKALANAGISVDLINVS-PE-----EVIFTVDGE   47 (67)
T ss_pred             CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-----CEEEEEchh
Confidence            3578999999999999999999999554 22     388888854

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>TIGR00657 asp_kinases aspartate kinase

Probab=88.01  E-value=5.4  Score=42.17  Aligned_cols=115  Identities=21%  Similarity=0.260  Sum_probs=75.6

Q ss_pred             hhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc---CceeeEEEecCCchhhhhheeeEEE
Q 013068           90 SGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK---LVNVIKVEDISNEPHVERELMLIKL  166 (450)
Q Consensus        90 pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K---LiDVi~V~dlt~~~~V~RELaLIKV  166 (450)
                      ||++.||.+.|++.|+||+.++.+.++  .-+.++++.++  .+...+.|.+   ...+..+.       +.+.+++|.|
T Consensus       315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I~-------~~~~~a~Vsv  383 (441)
T TIGR00657       315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSVE-------VEKGLAKVSL  383 (441)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceEE-------EcCCeEEEEE
Confidence            899999999999999999999744332  23777776433  3333343433   33333333       5678899998


Q ss_pred             eCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068          167 NGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       167 ~~~-----~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~  215 (450)
                      -..     +.--.++++.....+-.|.-++.....+-++=+.+..+..++.|.+
T Consensus       384 vG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh~  437 (441)
T TIGR00657       384 VGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLHN  437 (441)
T ss_pred             EcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHHH
Confidence            432     3445688888888888888775444445555555666666776653

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=87.98  E-value=0.75  Score=39.71  Aligned_cols=50  Identities=30%  Similarity=0.448  Sum_probs=40.0

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEE--EEeCC
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTI--VVSGT  128 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTI--VV~gd  128 (450)
                      ||+..|+|.=.||||+.+.|+++|++.|.||.-++  .|--.+++|+  .|+.+
T Consensus         1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~~lV~~~   52 (90)
T COG3830           1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMIMLVDIS   52 (90)
T ss_pred             CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH--HHHHhhhceeeeEEcCC
Confidence            57889999999999999999999999999998655  5555566555  45543

>PRK02047 hypothetical protein; Provisional

Probab=87.78  E-value=5.7  Score=33.93  Aligned_cols=73  Identities=12%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCce--eeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYN--IQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyN--IeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      ..+.+.+...|.++..+.|..++.++...  -.+++.-++....+-.+|+.+. .++++++.|=+.|.+.-.|.-|
T Consensus        15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v   90 (91)
T PRK02047         15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV   90 (91)
T ss_pred             CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence            35899999999999999999999998555  6779999999999999999987 5778899999999999888654

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=87.11  E-value=1.7  Score=31.72  Aligned_cols=53  Identities=30%  Similarity=0.428  Sum_probs=39.3

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL  379 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL  379 (450)
                      ..+++|++.++...|++.|.|+..++.+..+    .+++++++.+  ..+.+.+.|+|.
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~----~~i~~~v~~~--~~~~~~~~l~~~   62 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDED--DADKAVKALHEE   62 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc----eeEEEEEeHH--HHHHHHHHHHHH
Confidence            3478999999999999999999998775522    5577777743  355566666553

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins

Probab=86.99  E-value=2.5  Score=33.87  Aligned_cols=59  Identities=24%  Similarity=0.345  Sum_probs=44.5

Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 013068          163 LIKLNG--DTSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI-KEL  221 (450)
Q Consensus       163 LIKV~~--~~~~r~eI~~l~~~frAkI------VDv----s~~sl~iEvTG~~~KIdafi~~L~~fGI-lEi  221 (450)
                      ++|+..  +....+-|.++++.|+..+      ||-    .-+.+++|+.|++++++++++.|+..|+ .|.
T Consensus         4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v~vEv   75 (76)
T PF09383_consen    4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGVEVEV   75 (76)
T ss_dssp             EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCCeEEE
Confidence            456654  4466778999999988665      333    5578999999999999999999999996 443

This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.

>PRK08639 threonine dehydratase; Validated

Probab=86.59  E-value=4.9  Score=42.47  Aligned_cols=81  Identities=12%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             eEEEEEEEEeccchHHHHHHH-HHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEEecCC
Q 013068          313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH  390 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItg-LFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~dlt~  390 (450)
                      +...+++..-++||-|.++.. +++.++ ||..+.--.....+..++.+++.. +.+.++++..+|++.=.  ++.++++
T Consensus       335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~Gy--~~~~~~~  411 (420)
T PRK08639        335 LKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFGP--SYIDINP  411 (420)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCCC--ceEECCC
Confidence            467999999999999999999 555555 999986554445556678888874 44689999999998653  5556777


Q ss_pred             ChhHHH
Q 013068          391 LPFAER  396 (450)
Q Consensus       391 ~~~V~R  396 (450)
                      .+.++.
T Consensus       412 ~~~~~~  417 (420)
T PRK08639        412 NEPLYN  417 (420)
T ss_pred             CHHHHH
Confidence            666543

>PRK08526 threonine dehydratase; Provisional

Probab=86.53  E-value=3.2  Score=43.87  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=55.9

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC---CCCeeEEEEEEe-CChhHHHHHHHHHhcc
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE---KEGLSCITTVVP-GTDESIGKLVQLLHKL  379 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te---~~~iSRiTIVV~-gd~~~ieQI~kQL~KL  379 (450)
                      +.+.+.+.+.++||-|.+++.++++.|-||..+.-....   ..+-.++++++. -+.+.+++|...|++.
T Consensus       325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~  395 (403)
T PRK08526        325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK  395 (403)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence            468999999999999999999999999999998876533   347788888887 3566899999988654

>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B

Probab=86.14  E-value=1.8  Score=37.92  Aligned_cols=65  Identities=18%  Similarity=0.388  Sum_probs=52.1

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCc-E----EEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKA-L----FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i----iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      +-|.+|..|..+-...|..+.+++.++....+ +    ++|.+.|+-..+-..+++|+++-.++.|++++
T Consensus        51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~  120 (144)
T PF04350_consen   51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS  120 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred             hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence            45899999999999999999999998654443 2    78889999999999999999999999998775

>PRK09034 aspartate kinase; Reviewed

Probab=86.09  E-value=12  Score=40.04  Aligned_cols=118  Identities=12%  Similarity=0.204  Sum_probs=74.2

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH--HH-HHHHHHhhcCceeeEEEecCCchhhhhheee
Q 013068           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VL-RQVVEQLNKLVNVIKVEDISNEPHVERELML  163 (450)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~--~i-eqL~kQL~KLiDVi~V~dlt~~~~V~RELaL  163 (450)
                      ..+||++.||.+.|++.|+||+.++    ....-++++++.++.  .. ..+...|++-..+..+.       +.+.+++
T Consensus       319 ~~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~-------~~~~va~  387 (454)
T PRK09034        319 NREVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELE-------IEHDLAI  387 (454)
T ss_pred             CCCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEE-------EeCCEEE
Confidence            3479999999999999999999983    222337788875432  11 45555665544433332       6678999


Q ss_pred             EEEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 013068          164 IKLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       164 IKV~~~-----~~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~~  215 (450)
                      |.+-..     +.--..++.....++.+|.-++  .....|-++=+.+..+..++.|..
T Consensus       388 VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~  446 (454)
T PRK09034        388 IMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYN  446 (454)
T ss_pred             EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHH
Confidence            999432     2344578888888888885443  222334444444555555665543

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=86.02  E-value=2.3  Score=33.51  Aligned_cols=45  Identities=29%  Similarity=0.383  Sum_probs=31.4

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHh
Q 013068           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL  139 (450)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL  139 (450)
                      +.||+++|+++.++..|+||.-++   ++.  -+.+.|..  +.+++.++-|
T Consensus        19 ~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~~--~~~~~A~~~L   63 (65)
T PF13840_consen   19 DVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVKE--EDLEKAVEAL   63 (65)
T ss_dssp             TSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEEG--GGHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEeH--HHHHHHHHHh
Confidence            599999999999999999999888   332  35566653  3344444444

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=85.84  E-value=2.2  Score=32.40  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhh
Q 013068           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLN  140 (450)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~  140 (450)
                      .+.||++.|+...|++.|+|++.++-+..+  ..+.+++..++  .+.+.+.|.
T Consensus        12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh   61 (66)
T cd04919          12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIH   61 (66)
T ss_pred             CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHH
Confidence            468999999999999999999999876532  44777776533  333344443

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=85.66  E-value=1.8  Score=32.09  Aligned_cols=50  Identities=24%  Similarity=0.375  Sum_probs=37.1

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      ..+.||++.++...+++.|.|++.++..     + .+++++++.+  ..+++.+-|++
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~-~~is~~v~~~--~~~~~~~~l~~   59 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMISTS-----E-IKISCLVDED--DAEKAVRALHE   59 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEcc-----C-CeEEEEEeHH--HHHHHHHHHHH
Confidence            3577999999999999999999999742     1 5688888743  34555555554

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=85.58  E-value=2.5  Score=48.75  Aligned_cols=64  Identities=16%  Similarity=0.170  Sum_probs=46.0

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-----hhHHHHHHHHHhc
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-----DESIGKLVQLLHK  378 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-----~~~ieQI~kQL~K  378 (450)
                      ..+|.|...|+||+|.+|+.+|.+-|++|.+--+..- .+.+--+-.|.+.+     +...+.|.++|.+
T Consensus       783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~-gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~  851 (854)
T PRK01759        783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI-GEKAEDFFILTNQQGQALDEEERKALKSRLLS  851 (854)
T ss_pred             eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc-CceEEEEEEEECCCCCcCChHHHHHHHHHHHH
Confidence            4689999999999999999999999999999777654 34444444444422     2233666666543

>TIGR02079 THD1 threonine dehydratase

Probab=85.46  E-value=5.8  Score=41.88  Aligned_cols=81  Identities=12%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             eEEEEEEEEeccchHHHHHHH-HHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccCEEEEEecCC
Q 013068          313 RSHTLSMLVNNTPGVLNIVTG-VISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLIDLHEVQDITH  390 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItg-LFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~dlt~  390 (450)
                      +...+++.+-++||-|.+++. +++.++ ||..+.-......+..++.+.+.. +.+.+++|.+.|++.=  .++.++++
T Consensus       324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~  400 (409)
T TIGR02079       324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE  400 (409)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence            467999999999999999999 555545 999777665556678888888874 4578899999998864  35567777


Q ss_pred             ChhHHH
Q 013068          391 LPFAER  396 (450)
Q Consensus       391 ~~~V~R  396 (450)
                      .+.++.
T Consensus       401 ~~~~~~  406 (409)
T TIGR02079       401 NDILYN  406 (409)
T ss_pred             CHHHHH
Confidence            766554

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=85.42  E-value=2.6  Score=48.85  Aligned_cols=64  Identities=19%  Similarity=0.341  Sum_probs=46.2

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC---hhHHHHHHHHHhc
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHK  378 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd---~~~ieQI~kQL~K  378 (450)
                      ..+.|...|+||++++|+|+|++.|+||.+--+-.+.+.-.--.-.|.+.+   .+..+++.+.|.+
T Consensus       691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~  757 (869)
T PRK04374        691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQ  757 (869)
T ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHH
Confidence            478999999999999999999999999999888777655444433344322   2345555555555

>PRK15385 magnesium transport protein MgtC; Provisional

Probab=84.90  E-value=7.7  Score=38.53  Aligned_cols=73  Identities=10%  Similarity=0.140  Sum_probs=58.2

Q ss_pred             ceEEEEEEEEcCchh--HHHHHHHHHhccCceeeeEeeeecCCCc--EEEE--EEeC-ChHHHHHHHHHhhcCceeeEEE
Q 013068           77 VKRHTISVFVGDESG--IINRIAGVFARRGYNIESLAVGLNVDKA--LFTI--VVSG-TERVLRQVVEQLNKLVNVIKVE  149 (450)
Q Consensus        77 ~~~~tISVlVeN~pG--VL~RIagLFsRRGyNIeSLsvg~ted~~--iiTI--VV~g-de~~ieqL~kQL~KLiDVi~V~  149 (450)
                      ...|.+++...++++  ++.++...+...+|.+.++.+.+.++++  .++.  ...+ ++..+++++.+|...-.|.+|.
T Consensus       140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~  219 (225)
T PRK15385        140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH  219 (225)
T ss_pred             ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence            346788888877664  6999999999999999999998766554  3444  3333 5788999999999999999886

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=84.74  E-value=2.1  Score=33.39  Aligned_cols=50  Identities=26%  Similarity=0.366  Sum_probs=39.7

Q ss_pred             ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      +.||++.|+...|++.|+||.-++-|.++    .+++++++.+  ..++..+.|++
T Consensus        12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~----~sis~~v~~~--~~~~av~~Lh~   61 (65)
T cd04918          12 RSSLILERAFHVLYTKGVNVQMISQGASK----VNISLIVNDS--EAEGCVQALHK   61 (65)
T ss_pred             CCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHH
Confidence            46899999999999999999999988865    3588888854  45666666654

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=84.58  E-value=2.7  Score=31.66  Aligned_cols=40  Identities=18%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g  127 (450)
                      ..+.||++.||...+++.|+|++.++-+..+  ..+++++..
T Consensus        11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~   50 (66)
T cd04922          11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDE   50 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH
Confidence            4578999999999999999999999875532  457777774

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=84.48  E-value=3  Score=30.32  Aligned_cols=52  Identities=23%  Similarity=0.348  Sum_probs=36.2

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K  141 (450)
                      ..+++|.+.++...|++.|+|+..++.+..  ...++++++.  ...+.+.+.|+|
T Consensus        10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~--~~~i~~~v~~--~~~~~~~~~l~~   61 (65)
T cd04892          10 MRGTPGVAARIFSALAEAGINIIMISQGSS--EVNISFVVDE--DDADKAVKALHE   61 (65)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEcCCC--ceeEEEEEeH--HHHHHHHHHHHH
Confidence            457899999999999999999998876542  2336666654  334444444443

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>PRK00907 hypothetical protein; Provisional

Probab=84.02  E-value=7.9  Score=33.42  Aligned_cols=73  Identities=10%  Similarity=0.069  Sum_probs=63.7

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCc--eeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGY--NIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGy--NIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      ..+.|.|.-.+++++...|..++.+.+-  +=.++++-++....+-.+|+.+. .+.++++.|=+.|.+.-.|.-|
T Consensus        16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkmv   91 (92)
T PRK00907         16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKWT   91 (92)
T ss_pred             CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence            3589999999999999999999998865  56788889999999999999987 4677899999999999888543

>PRK09224 threonine dehydratase; Reviewed

Probab=83.78  E-value=33  Score=37.47  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=54.9

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcEEEEE--EeCChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKALFTIV--VSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~iiTIV--V~gde~~ieqL~kQL~KLiDVi~V~dlt~~  154 (450)
                      ++..+++.+-++||.|.+++.+++  +-||.-+.--... +.+.+.+.  +.+.+..+++|.+.|++.=  .++.++++.
T Consensus       327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~n  402 (504)
T PRK09224        327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSDD  402 (504)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCCC
Confidence            578999999999999999999999  6899888765432 22334444  4444445889999997743  467777776


Q ss_pred             hhh
Q 013068          155 PHV  157 (450)
Q Consensus       155 ~~V  157 (450)
                      +..
T Consensus       403 e~~  405 (504)
T PRK09224        403 ELA  405 (504)
T ss_pred             HHH
Confidence            543

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=83.59  E-value=2.8  Score=42.78  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeC--ChHHHHHHHHHhhcCceeeEE---
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSG--TERVLRQVVEQLNKLVNVIKV---  148 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~g--de~~ieqL~kQL~KLiDVi~V---  148 (450)
                      .++.++|.+--.++||..++|++.+.++|.||....--...+.++  |++...+  .....+++...+..+-+=...   
T Consensus         4 ~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~   83 (287)
T COG0788           4 EPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR   83 (287)
T ss_pred             CccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence            346789999999999999999999999999999888763333455  6666553  323466666665554431111   


Q ss_pred             -----------EecCCchhhhhheee--------EEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHH
Q 013068          149 -----------EDISNEPHVERELML--------IKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAV  209 (450)
Q Consensus       149 -----------~dlt~~~~V~RELaL--------IKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdaf  209 (450)
                                 .-.+.+.+=-.+|+.        +.|.+--.+-.+...+++.|+----.+.-+.-.     .++.=+..
T Consensus        84 ~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~-----k~e~E~~~  158 (287)
T COG0788          84 LHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN-----KAEAEARL  158 (287)
T ss_pred             EeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc-----chHHHHHH
Confidence                       111222222222210        111111145567778888887655444322111     46777788


Q ss_pred             HHHhccCCcEEEeeccceeeecCcCCCCc
Q 013068          210 QRNLSKFGIKELARTGKIALRREKLGDTA  238 (450)
Q Consensus       210 i~~L~~fGIlEiaRTG~iAl~Rg~~~~~~  238 (450)
                      +++++.||+      -.+-|+|=-+.++.
T Consensus       159 ~~ll~~~~~------DlvVLARYMqILS~  181 (287)
T COG0788         159 LELLEEYGA------DLVVLARYMQILSP  181 (287)
T ss_pred             HHHHHHhCC------CEEeehhhHhhCCH
Confidence            999999983      23456666554444

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=83.10  E-value=3.5  Score=29.26  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=36.2

Q ss_pred             ccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHH
Q 013068          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (450)
Q Consensus       323 N~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL  376 (450)
                      +.||.+.++...+++.|+||+.++.+..   + .+++++++.+  ..+++.+-|
T Consensus        12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~-~~~s~~v~~~--~~~~~~~~l   59 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES---E-VNISFTVDES--DLEKAVKAL   59 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCcEEEEEcCCC---c-EEEEEEEeHH--HHHHHHHHh
Confidence            4799999999999999999999988764   2 4577777743  355554433

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PRK09084 aspartate kinase III; Validated

Probab=82.73  E-value=23  Score=37.94  Aligned_cols=114  Identities=15%  Similarity=0.287  Sum_probs=75.1

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH-------HHHHHHHHhhcCceeeEEEecCCchhhhhh
Q 013068           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER-------VLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (450)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~-------~ieqL~kQL~KLiDVi~V~dlt~~~~V~RE  160 (450)
                      ++||.++||...|++.|+||+-++.++    .-++++++.++.       ..+.+.+.|+++-.   +       .+.+.
T Consensus       318 ~~~g~~a~if~~l~~~~I~Vd~I~sse----~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~---i-------~~~~~  383 (448)
T PRK09084        318 HARGFLAEVFGILARHKISVDLITTSE----VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR---V-------EVEEG  383 (448)
T ss_pred             ccccHHHHHHHHHHHcCCeEEEEeccC----cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe---E-------EEECC
Confidence            689999999999999999999998432    347777775442       22455555554211   1       25678


Q ss_pred             eeeEEEeCCCC-C----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068          161 LMLIKLNGDTS-T----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       161 LaLIKV~~~~~-~----r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~  215 (450)
                      +++|.|-.... +    -..++......+-.++..+.....|-+.=+.+..+..++.|..
T Consensus       384 va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~  443 (448)
T PRK09084        384 LALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQ  443 (448)
T ss_pred             eEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHH
Confidence            99999965432 2    2345554544567777776776666666666666666666653

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=82.58  E-value=4  Score=32.29  Aligned_cols=38  Identities=18%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g  127 (450)
                      ..|.||.+.+|.+.++++|+||+-++.. .+   -+++++..
T Consensus         9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~   46 (67)
T cd04914           9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG   46 (67)
T ss_pred             CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence            4578999999999999999999999554 22   36666653

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=82.55  E-value=5.3  Score=28.31  Aligned_cols=38  Identities=16%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             CchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068           88 DESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (450)
Q Consensus        88 N~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g  127 (450)
                      +.||.+.|+...+++.|+||+.++.+..  ...+++++..
T Consensus        12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~   49 (60)
T cd04868          12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDE   49 (60)
T ss_pred             CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeH
Confidence            5799999999999999999999988764  2336677764

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=82.29  E-value=3.6  Score=34.33  Aligned_cols=60  Identities=17%  Similarity=0.351  Sum_probs=47.2

Q ss_pred             EEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC---hhHHHHHHHHHhcccCEEEE
Q 013068          320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT---DESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       320 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd---~~~ieQI~kQL~KLidVi~V  385 (450)
                      +.++..|.+.|+..+|.+.|.++|-+.      .|+-.|+|+++.+   ++.+++|++.|++-.+.-.+
T Consensus        10 ~Mn~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i   72 (76)
T cd04911          10 LMNREVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI   72 (76)
T ss_pred             hccchhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence            347889999999999999999999864      3556699999976   55778888888875554433

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B

Probab=82.28  E-value=5  Score=35.19  Aligned_cols=67  Identities=18%  Similarity=0.321  Sum_probs=53.5

Q ss_pred             ccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeE--EEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          323 NTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSC--ITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       323 N~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSR--iTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      +-|.+|..|..+-...|..+.+++.++.. .+.+.+  ++|.+.|+-..+-+..++|+++..++.|.+++
T Consensus        51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~  120 (144)
T PF04350_consen   51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS  120 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred             hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence            46899999999999999999999999644 466666  45556799999999999999999999999886

>PRK04998 hypothetical protein; Provisional

Probab=82.02  E-value=11  Score=31.84  Aligned_cols=73  Identities=19%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      ..|.+.+...+.++.++.|..+|.+..-.-+.++.-++....+-.+|+.+. -++++++.|=+.|.+...|+-|
T Consensus        14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~mv   87 (88)
T PRK04998         14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVRMV   87 (88)
T ss_pred             CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            358999999999999999999997764333457778888899999999987 5778899999999998888643

>PRK09977 putative Mg(2+) transport ATPase; Provisional

Probab=81.92  E-value=10  Score=37.26  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=54.5

Q ss_pred             EEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEE
Q 013068          315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQ  386 (450)
Q Consensus       315 htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~  386 (450)
                      |.+.+.+++.  -+..+...|.+.++.+.++.....+++..-.+++.++ .+...+++..+|.++.+|.+|.
T Consensus       145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~  213 (215)
T PRK09977        145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS  213 (215)
T ss_pred             EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence            5555555444  3688889999999999999988777676666777777 4467899999999999999885

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=81.90  E-value=3.7  Score=30.79  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=36.6

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K  141 (450)
                      ..+.||++.++...+++.|+|++-++.+..+  ..+++++..+  ..+++.+-|.+
T Consensus        11 ~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~--~~~~~~~~Lh~   62 (66)
T cd04924          11 MRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED--DGWAAVKAVHD   62 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH--HHHHHHHHHHH
Confidence            3478999999999999999999999876533  3466777642  23444444433

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=81.88  E-value=9  Score=28.21  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g  127 (450)
                      ..+.||++.|+...+++.|+|++.++..    ...+++++..
T Consensus        10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~   47 (63)
T cd04923          10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDE   47 (63)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeH
Confidence            4578999999999999999999999842    2347777764

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=81.86  E-value=3.8  Score=32.38  Aligned_cols=41  Identities=22%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT  365 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd  365 (450)
                      ..+.||++.++...+++.|.|++.++.+..+    .+++++++.+
T Consensus        11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~----~~isf~v~~~   51 (80)
T cd04921          11 MVGVPGIAARIFSALARAGINVILISQASSE----HSISFVVDES   51 (80)
T ss_pred             CCCCccHHHHHHHHHHHCCCcEEEEEecCCc----ceEEEEEeHH
Confidence            4578999999999999999999999887443    2677888753

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>PRK14434 acylphosphatase; Provisional

Probab=81.78  E-value=3.6  Score=35.10  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=41.4

Q ss_pred             CCHHHHHHHHHhcC---cEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 013068          171 STWPEIMWLVDIFR---AKVVDISEHALTIEVTGDP-GKMVAVQRNLSK  215 (450)
Q Consensus       171 ~~r~eI~~l~~~fr---AkIVDvs~~sl~iEvTG~~-~KIdafi~~L~~  215 (450)
                      .-|.-+.++|+.++   +.|-...+.++.+++.|++ ++++.|++.|+.
T Consensus        16 GFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~   64 (92)
T PRK14434         16 GFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK   64 (92)
T ss_pred             eEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence            46889999999999   9999999999999999998 699999999975

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=81.35  E-value=4.5  Score=30.41  Aligned_cols=41  Identities=22%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd  128 (450)
                      +.+.||++.|+...+++.|+|++.++.+.++  ..+++++..+
T Consensus        11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~   51 (66)
T cd04916          11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNE   51 (66)
T ss_pred             CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHH
Confidence            4578999999999999999999999876532  4477777643

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=81.30  E-value=14  Score=39.73  Aligned_cols=121  Identities=15%  Similarity=0.193  Sum_probs=75.1

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEEE
Q 013068           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL  166 (450)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIKV  166 (450)
                      .+.||++.|+...|++.|+||+-++.+.++  .-++++++.++  .++..+.|.+...=.    .-..=.+..++++|.|
T Consensus       332 ~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~d--~~~av~~L~~~~~~~----~~~~i~~~~~~a~Isv  403 (465)
T PRK06291        332 VGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEAD--LEKALKALRREFGEG----LVRDVTFDKDVCVVAV  403 (465)
T ss_pred             CCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHHH--HHHHHHHHHHHHHHh----cCcceEEeCCEEEEEE
Confidence            378999999999999999999999866433  23677776432  333344343321100    0011135678899988


Q ss_pred             eCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 013068          167 NGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       167 ~~~~-----~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~~  215 (450)
                      -...     .--..++......+.+|.-++  ....-|-+.=+.+..+..++.|..
T Consensus       404 vG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~  459 (465)
T PRK06291        404 VGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHD  459 (465)
T ss_pred             EcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHH
Confidence            6543     233467777777788886554  444455555556667777776653

>PRK12483 threonine dehydratase; Reviewed

Probab=80.60  E-value=9.9  Score=41.82  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=76.6

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHH-HHHHHHHhcccCEEEEEecCC
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESI-GKLVQLLHKLIDLHEVQDITH  390 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~i-eQI~kQL~KLidVi~V~dlt~  390 (450)
                      +.+.+++...++||-|.+++.+++.+  ||..+.--. ...+-..+.+.+.. +.+.+ ++|.+.|++.=  .++.++++
T Consensus       344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsd  418 (521)
T PRK12483        344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY-ADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTD  418 (521)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe-cCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCC
Confidence            46899999999999999999999988  999887765 33344777777763 33455 99999997744  46778888


Q ss_pred             ChhH---------------HHhhheeEeecCccchHHHHHHHHhcCc
Q 013068          391 LPFA---------------ERELILIKIAVNTAARRDVLDIAKIFRA  422 (450)
Q Consensus       391 ~~~V---------------~REL~LIKV~~~~~~R~eI~~i~~iFra  422 (450)
                      .+..               .|| +|+.|..+ +.....++.++.++-
T Consensus       419 ne~~k~h~r~~~g~~~~~~~~E-~~~~v~iP-E~pGa~~~f~~~l~~  463 (521)
T PRK12483        419 DELAKLHIRHMVGGRAPLAHDE-RLFRFEFP-ERPGALMKFLSRLGP  463 (521)
T ss_pred             CHHHHHHHHhccCCCCCCCCce-EEEEEEcC-CCCcHHHHHHHHhCC
Confidence            7663               344 46667664 455678888887775

>PLN02551 aspartokinase

Probab=80.38  E-value=20  Score=39.52  Aligned_cols=115  Identities=17%  Similarity=0.264  Sum_probs=72.4

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH--------HHHHHHHHhhcCceeeEEEecCCchhhh
Q 013068           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--------VLRQVVEQLNKLVNVIKVEDISNEPHVE  158 (450)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~--------~ieqL~kQL~KLiDVi~V~dlt~~~~V~  158 (450)
                      -++||.++||.+.|.+.|+||+-++.+  +  .-++++++.++.        .++++...|+++   ..|       .+.
T Consensus       377 ~~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~  442 (521)
T PLN02551        377 LGQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLL  442 (521)
T ss_pred             CCcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEe
Confidence            368999999999999999999999643  2  337777776542        223333344432   112       256


Q ss_pred             hheeeEEEeCCCCC----HHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhcc
Q 013068          159 RELMLIKLNGDTST----WPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       159 RELaLIKV~~~~~~----r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~~  215 (450)
                      +.+++|-|-.....    -..++......+.+|.-++  ...+-|-+.=+.+..+..++.|..
T Consensus       443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~  505 (521)
T PLN02551        443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS  505 (521)
T ss_pred             CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHH
Confidence            78888888654222    2356666667777884444  444555555555666666666654

>PRK08210 aspartate kinase I; Reviewed

Probab=80.27  E-value=13  Score=38.80  Aligned_cols=96  Identities=10%  Similarity=0.094  Sum_probs=64.1

Q ss_pred             EEEEEEecc-chHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCChhH
Q 013068          316 TLSMLVNNT-PGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFA  394 (450)
Q Consensus       316 tLSilVeN~-pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~V  394 (450)
                      .+++.-.|. ||.++||.+.|.+.|+||+.++....      .++++++.  ...+++.+.|+++-.         .-.+
T Consensus       273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~------~is~~v~~--~~~~~a~~~l~~~~~---------~v~~  335 (403)
T PRK08210        273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT------EVVFTVSD--EDSEKAKEILENLGL---------KPSV  335 (403)
T ss_pred             EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc------eEEEEEcH--HHHHHHHHHHHHhCC---------cEEE
Confidence            445554444 99999999999999999999977731      36677763  336666666666421         2345


Q ss_pred             HHhhheeEeecCcc-----chHHHHHHHHhcCcEEEEec
Q 013068          395 ERELILIKIAVNTA-----ARRDVLDIAKIFRARAVDVS  428 (450)
Q Consensus       395 ~REL~LIKV~~~~~-----~R~eI~~i~~iFrakIVDvs  428 (450)
                      .+.+++|.|-...-     .-..+++.....+-+|+..+
T Consensus       336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~  374 (403)
T PRK08210        336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSA  374 (403)
T ss_pred             eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEe
Confidence            67788888865432     12456766677777777554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	450
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		1e-25
2pc6_A	165	Crystal Structure Of Putative Acetolactate Synthase		6e-17
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		2e-24
2f1f_A	164	Crystal Structure Of The Regulatory Subunit Of Acet		2e-14
2fgc_A	193	Crystal Structure Of Acetolactate Synthase- Small S		7e-21
2fgc_A	193	Crystal Structure Of Acetolactate Synthase- Small S		8e-16

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score =  114 bits (285), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+   +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 4   RHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQIT 63
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL+ V+K+ D+S+E +VEREL L+K+        E   L DIFR  ++D++    T
Sbjct: 64  KQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNELYT 123
Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IE+TG   K+    + +    I E+ARTG   L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small Subunit From Nitrosomonas Europaea Length = 165

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 74/126 (58%)
Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG 370
           G   H +S+L  N  G L+ V G+ S RGYNI+SL+V P E   LS  T V  G DE + 
Sbjct: 1   GHXRHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVE 60
Query: 371 KLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDH 430
           ++ + L+KLI++ ++ D++   + EREL L+K+      R +   +A IFR   +DV++ 
Sbjct: 61  QITKQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNE 120
Query: 431 TITLEV 436
             T+E+
Sbjct: 121 LYTIEL 126

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 100/158 (63%), Gaps = 7/158 (4%)
Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct: 3   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 62
Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++    T
Sbjct: 63  KQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYT 122
Query: 197 IEVTGDPGKM---VAVQRNLSKFGIKELARTGKIALRR 231
           +++ G  GK+   +A  R+++K  I E+AR+G + L R
Sbjct: 123 VQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 158

>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of Acetohydroxyacid Synthase Isozyme Iii From E. Coli Length = 164

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 72/120 (60%)
Query: 317 LSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL 376
           LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + ++ + L
Sbjct: 6   LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 65
Query: 377 HKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           HKL+D+  V ++      ERE++L+KI  +   R +V    +IFR + +DV+    T+++
Sbjct: 66  HKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQL 125

>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit From Thermotoga Maritima Length = 193

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/160 (38%), Positives = 92/160 (57%), Gaps = 5/160 (3%)
Query: 76  KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLR 133
           +++ H +S  V ++ G+  ++A +FARRG+NI S+ VG +    L    I V G ++ + 
Sbjct: 26  QIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIE 85
Query: 134 QVVEQLNKLVNVIKVEDISNEPH--VERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDIS 191
           Q+ +Q  KLV V+KV  I   P   VERE  LIK+  D     EI  LV+IFR K++D+S
Sbjct: 86  QIEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDEDKQ-EIFQLVEIFRGKIIDVS 144
Query: 192 EHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
                IE+TG   K+ A    L +  ++E+ARTG +A  R
Sbjct: 145 REGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184

>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit From Thermotoga Maritima Length = 193

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +R H +S LV+N PGV   V  + +RRG+NI S+ VG +E  GLS +   V G D++I +
Sbjct: 27  IREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIEQ 86
Query: 372 LVQLLHKLIDLHEVQDITHLP--FAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSD 429
           + +  +KL+++ +V  I  LP    ERE  LIK+  +   ++++  + +IFR + +DVS 
Sbjct: 87  IEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFD-EDKQEIFQLVEIFRGKIIDVSR 145
Query: 430 HTITLEV 436
               +E+
Sbjct: 146 EGAIIEI 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	3e-76
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	2e-51
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	2e-75
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	3e-49
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	9e-75
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	1e-49
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	2e-04
2f06_A	144	Conserved hypothetical protein; structural genomic	3e-04

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  234 bits (599), Expect = 3e-76
 Identities = 64/155 (41%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 4   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 63

Query: 137 EQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALT 196
           +QLNKL+ V+K+ D+S+E +VERELML+K+        E+  L DIFR  ++D++    T
Sbjct: 64  KQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYT 123

Query: 197 IEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRR 231
           IE+TG   K+    + +    I E+ARTG   L R
Sbjct: 124 IELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 Length = 165

 Score =  170 bits (433), Expect = 2e-51
 Identities = 47/126 (37%), Positives = 78/126 (61%)

Query: 311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG 370
           G   H +S+L+ N  G L+ V G+ S RGYNI+SL+V P E   LS +T V  G DE + 
Sbjct: 1   GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVE 60

Query: 371 KLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDH 430
           ++ + L+KLI++ ++ D++   + EREL+L+K+      R ++  +A IFR   +DV++ 
Sbjct: 61  QITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNE 120

Query: 431 TITLEV 436
             T+E+
Sbjct: 121 LYTIEL 126

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  233 bits (596), Expect = 2e-75
 Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 5/174 (2%)

Query: 71  PITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT 128
                +++ H +S+ V ++ G++ ++A +FARRG+NI S+ VG +    L    I+V G 
Sbjct: 21  GHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD 80

Query: 129 ERVLRQVVEQLNKLVNVIKVEDISNEP--HVERELMLIKLNGDTSTWPEIMWLVDIFRAK 186
           ++ + Q+ +Q  KLV V+KV  I   P   VERE+ LIK+  D     EI  LV+IFR K
Sbjct: 81  DKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFD-EDKQEIFQLVEIFRGK 139

Query: 187 VVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKLGDTAPF 240
           ++D+S     IE+TG   K+ A    L +  ++E+ARTG +A+ R  + +   F
Sbjct: 140 IIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWNVKEGEGF 193

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Length = 193

 Score =  165 bits (421), Expect = 3e-49
 Identities = 46/133 (34%), Positives = 80/133 (60%), Gaps = 3/133 (2%)

Query: 306 DEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT 365
                 +R H +SMLV+N PGV+  V  + +RRG+NI S+ VG +E  GLS +  +V G 
Sbjct: 21  GHMTDQIREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD 80

Query: 366 DESIGKLVQLLHKLIDLHEVQDITHLP--FAERELILIKIAVNTAARRDVLDIAKIFRAR 423
           D++I ++ +  +KL+++ +V  I  LP    ERE+ LIK+  +   ++++  + +IFR +
Sbjct: 81  DKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRFD-EDKQEIFQLVEIFRGK 139

Query: 424 AVDVSDHTITLEV 436
            +DVS     +E+
Sbjct: 140 IIDVSREGAIIEI 152

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  230 bits (589), Expect = 9e-75
 Identities = 59/158 (37%), Positives = 97/158 (61%), Gaps = 3/158 (1%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
           + R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 135 VVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHA 194
           + +QL+KLV+V++V ++    HVERE+ML+K+        E+    +IFR +++D++   
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 120

Query: 195 LTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRR 231
            T+++ G  GK+ A   ++     I E+AR+G + L R
Sbjct: 121 YTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Length = 164

 Score =  165 bits (421), Expect = 1e-49
 Identities = 42/125 (33%), Positives = 73/125 (58%)

Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +    LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + +
Sbjct: 1   MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQ 60

Query: 372 LVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHT 431
           + + LHKL+D+  V ++      ERE++L+KI  +   R +V    +IFR + +DV+   
Sbjct: 61  IEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSL 120

Query: 432 ITLEV 436
            T+++
Sbjct: 121 YTVQL 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 58/378 (15%), Positives = 109/378 (28%), Gaps = 94/378 (24%)

Query: 133 RQVVEQLNKLVNVIKVEDISNEPHVE---RELMLIKLNGDTSTWPEIM---------WLV 180
           + V +    +++  +++ I            L    L+       + +         +L+
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 181 DIFRAKVVDISEHALTIEVTGDP---GKMVAVQRNLS--------KFGIKELAR------ 223
              + +    S          D       V  + N+S        +  + EL        
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 224 -----TGK-----IALRREKLGDTAP---FW-NFSAASYPDLEEKKRTGIFIPETNQSLN 269
                +GK           K+        FW N    + P+          + E  Q L 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET---------VLEMLQKLL 206

Query: 270 GNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGILYDEDPSGLRSHTLSMLV--N-NTPG 326
              + + +SR          D S+N  L  H            + +   +LV  N     
Sbjct: 207 YQIDPNWTSRS---------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 327 VLNIVTG-----VISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIG----KLVQLLH 377
             N         + +R       L+            TT +     S+     ++  LL 
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAA---------TTTHISLDHHSMTLTPDEVKSLLL 308

Query: 378 KLIDLHEVQDITHLPFAERELILI---KIAVNTAARRDVLDIAKIFRARAVDVSDHTITL 434
           K +D    QD   LP   RE++     ++++   + RD L     ++    D     I  
Sbjct: 309 KYLDC-RPQD---LP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 435 EVNPINNICF--FFDSLS 450
            +N +    +   FD LS
Sbjct: 362 SLNVLEPAEYRKMFDRLS 379

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 81  TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQ 138
            I +   D++G+ N+I GV ++   NI ++ +            I V  T++ L  ++++
Sbjct: 7   GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDK-LTTLMDK 65

Query: 139 LNKLVNVIKVEDISNEPH 156
           L K+  V  VE +SN  H
Sbjct: 66  LRKVQGVFTVERLSNLEH 83

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Length = 144

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQ--L 139
           +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +VS  ++  + + +    
Sbjct: 9   LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFA 68

Query: 140 NKLVNVIKVEDISNEPHVERELM 162
             + +V+ +    N P    +++
Sbjct: 69  VNITDVVGIS-CPNVPGALAKVL 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	100.0
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	100.0
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	100.0
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.18
2f06_A	144	Conserved hypothetical protein; structural genomic	99.06
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.88
2f06_A	144	Conserved hypothetical protein; structural genomic	98.85
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.71
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.63
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.62
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.48
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.21
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.99
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	97.71
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.36
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.18
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.11
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.1
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.02
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	96.92
2nyi_A	195	Unknown protein; protein structure initiative, PSI	96.83
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.76
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.72
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.6
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.49
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.49
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.47
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.43
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.42
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.38
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.36
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.33
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.29
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.29
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.19
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	96.03
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	95.82
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	95.76
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	95.67
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	95.64
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	95.22
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	95.07
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	94.23
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	94.1
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	94.04
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	93.9
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	93.82
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	93.78
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	93.67
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.66
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	93.61
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	93.59
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	92.9
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	92.15
3luy_A	329	Probable chorismate mutase; structural genomics, A	92.07
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	92.05
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	91.62
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	91.51
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	90.7
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	90.59
3luy_A	329	Probable chorismate mutase; structural genomics, A	90.49
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	89.93
1rwu_A	109	Hypothetical UPF0250 protein YBED; mixed alpha-bet	88.58
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	87.4
2lqj_A	94	Mg2+ transport protein; ACT domain, membrane prote	86.71
2h9z_A	86	Hypothetical protein HP0495; feredoxin-like (beta-	85.72
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	84.99
2qrr_A	101	Methionine import ATP-binding protein METN; alpha-	84.44
2nzc_A	86	Hypothetical protein; sturctural genomics, TM1266,	84.3
3dhx_A	106	Methionine import ATP-binding protein METN; methio	84.18
3ced_A	98	Methionine import ATP-binding protein METN 2; ABC	82.66
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	80.28

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.7e-50  Score=379.22  Aligned_cols=158  Identities=39%  Similarity=0.634  Sum_probs=153.1

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCC-
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISN-  153 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~-  153 (450)
                      +|+|+|+++++|+||+|+||+++|++|||||+||++++++++++  |||+|+++++.++||.+||+||+||++|.++++ 
T Consensus        27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~  106 (193)
T 2fgc_A           27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL  106 (193)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred             ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence            57999999999999999999999999999999999999999975  899999999999999999999999999999999 


Q ss_pred             -chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 013068          154 -EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (450)
Q Consensus       154 -~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg  232 (450)
                       .++|+||||||||++++. |.||++++++|||+|||+++++++||+||+++||++|+++|+||||+|++|||.+||.||
T Consensus       107 ~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~RtG~val~Rg  185 (193)
T 2fgc_A          107 PENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW  185 (193)
T ss_dssp             GGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             CCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEccChhheecC
Confidence             999999999999999988 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 013068          233 KLG  235 (450)
Q Consensus       233 ~~~  235 (450)
                      +..
T Consensus       186 ~~~  188 (193)
T 2fgc_A          186 NVK  188 (193)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            754

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=6.3e-50  Score=367.20  Aligned_cols=158  Identities=41%  Similarity=0.633  Sum_probs=153.7

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~  154 (450)
                      .|+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  |||+++++++.++||.+||+||+||++|.++++.
T Consensus         2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~   81 (165)
T 2pc6_A            2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSE   81 (165)
T ss_dssp             CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            46899999999999999999999999999999999999998874  8999999999999999999999999999999999


Q ss_pred             hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCcC
Q 013068          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREKL  234 (450)
Q Consensus       155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~~  234 (450)
                      ++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++||++|+++|+||||+|++|||.+||.||+.
T Consensus        82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~~  161 (165)
T 2pc6_A           82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGER  161 (165)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTTC
T ss_pred             ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999974

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=3.2e-49  Score=361.91  Aligned_cols=158  Identities=37%  Similarity=0.653  Sum_probs=153.4

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNE  154 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~  154 (450)
                      ||+|+|+++++|+||+|+||+++|++|||||+||+++++++++.  ||++++++++.++||.+||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            67999999999999999999999999999999999999998864  8999999999999999999999999999999999


Q ss_pred             hhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecCc
Q 013068          155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRREK  233 (450)
Q Consensus       155 ~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fG-IlEiaRTG~iAl~Rg~  233 (450)
                      ++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++||++|+++|+||| |+|++|||.+||.||+
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~  160 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD  160 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred             ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999997


Q ss_pred             C
Q 013068          234 L  234 (450)
Q Consensus       234 ~  234 (450)
                      .
T Consensus       161 ~  161 (164)
T 2f1f_A          161 K  161 (164)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.5e-44  Score=338.93  Aligned_cols=148  Identities=32%  Similarity=0.552  Sum_probs=131.6

Q ss_pred             ccccccccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHH
Q 013068          297 LDAHWGILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLL  376 (450)
Q Consensus       297 l~~~~~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL  376 (450)
                      .|++||-+.+.    +|+|+|+++|+|+||+|+||+++|+||||||+||++++++++++|||||+|+|+++.++||.|||
T Consensus        16 ~~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL   91 (193)
T 2fgc_A           16 NLYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQA   91 (193)
T ss_dssp             ---------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHH
T ss_pred             chhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence            68999988553    46999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCEEEEEecCC--ChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh-hhhhc
Q 013068          377 HKLIDLHEVQDITH--LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF-FFDSL  449 (450)
Q Consensus       377 ~KLidVi~V~dlt~--~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~-~~~~L  449 (450)
                      +||+||++|.++++  .++|+||||||||++++. |.||++++++|||+|||+++++++||+||+++|++ |++.|
T Consensus        92 ~KLidVikV~dl~~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l  166 (193)
T 2fgc_A           92 YKLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLL  166 (193)
T ss_dssp             TTSTTEEEEEECCSSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHS
T ss_pred             cCcCceEEEEEecCCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHh
Confidence            99999999999999  999999999999999988 99999999999999999999999999999999984 55544

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=3.8e-42  Score=315.64  Aligned_cols=138  Identities=34%  Similarity=0.575  Sum_probs=132.5

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~  391 (450)
                      -|+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++++++.++||.+||+||+||++|.++++.
T Consensus         2 ~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~   81 (165)
T 2pc6_A            2 HMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSE   81 (165)
T ss_dssp             CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             ceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh-hhhhc
Q 013068          392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF-FFDSL  449 (450)
Q Consensus       392 ~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~-~~~~L  449 (450)
                      ++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++|++ |++.|
T Consensus        82 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l  140 (165)
T 2pc6_A           82 GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAV  140 (165)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHS
T ss_pred             ceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999984 44444

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=100.00  E-value=1.4e-41  Score=311.28  Aligned_cols=138  Identities=32%  Similarity=0.531  Sum_probs=132.3

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHL  391 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt~~  391 (450)
                      ||+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++++++.++||.+||+||+||++|.++++.
T Consensus         1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~   80 (164)
T 2f1f_A            1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG   80 (164)
T ss_dssp             -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred             CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhhh-hhhhc
Q 013068          392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNICF-FFDSL  449 (450)
Q Consensus       392 ~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~~-~~~~L  449 (450)
                      ++|+||||||||++++.+|.||++++++|||+|||++++++++|+||+++|++ |++.|
T Consensus        81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l  139 (164)
T 2f1f_A           81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASI  139 (164)
T ss_dssp             CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHH
T ss_pred             ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999985 44443

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.18  E-value=1.5e-09  Score=98.88  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhc
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK  141 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~K  141 (450)
                      +++|+|+..|+||++++|+++|+++|+||..+....+.+.-.+++++.+++...++|.++|.+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~   68 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPL   68 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHH
Confidence            689999999999999999999999999999999887554334778787666677777777744

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=99.06  E-value=3.9e-09  Score=91.84  Aligned_cols=125  Identities=14%  Similarity=0.223  Sum_probs=87.4

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCch
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEP  155 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~  155 (450)
                      .||.|+|+++++|+||+|+||+++|+++|+||++++++++.+++.++++++ +.+...++.++..-.+...         
T Consensus         3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~-d~~~a~~~L~~~G~~v~~~---------   72 (144)
T 2f06_A            3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS-DPDKAYKALKDNHFAVNIT---------   72 (144)
T ss_dssp             SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES-CHHHHHHHHHHTTCCEEEE---------
T ss_pred             ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC-CHHHHHHHHHHcCCeEeee---------
Confidence            588999999999999999999999999999999999998888886666654 4445555555442211111         


Q ss_pred             hhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCCc
Q 013068          156 HVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVD---I-SEH--ALTIEVTGDPGKMVAVQRNLSKFGI  218 (450)
Q Consensus       156 ~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVD---v-s~~--sl~iEvTG~~~KIdafi~~L~~fGI  218 (450)
                          .+.-+.++-.|..-.++.++....+..|..   . ++.  +++++.    +..+..++.|+.-|.
T Consensus        73 ----svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~  133 (144)
T 2f06_A           73 ----DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV  133 (144)
T ss_dssp             ----EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred             ----eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence                334446666667777888888878888833   2 333  344555    356666777776664

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.88  E-value=1.9e-08  Score=79.37  Aligned_cols=76  Identities=18%  Similarity=0.344  Sum_probs=66.6

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEEecCCC
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHL  391 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~dlt~~  391 (450)
                      .+.|.+.+.|+||+|++|+++|++.|+||.++.+....+  ...+++.+. .+...++++.++|+++.+|.+|..+..-
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~   81 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNL   81 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSC
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            578999999999999999999999999999999987543  778888876 4567899999999999999999877654

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.85  E-value=3.9e-08  Score=85.49  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=73.0

Q ss_pred             CCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       310 ~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      ..||.|.|++.++|+||+|++|+++|+++|+||++++++++.++++.|++  + .+.+...++.++..-.+...      
T Consensus         2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-~d~~~a~~~L~~~G~~v~~~------   72 (144)
T 2f06_A            2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-SDPDKAYKALKDNHFAVNIT------   72 (144)
T ss_dssp             CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-SCHHHHHHHHHHTTCCEEEE------
T ss_pred             CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-CCHHHHHHHHHHcCCeEeee------
Confidence            35889999999999999999999999999999999999988887888887  2 45555666555542211111      


Q ss_pred             CChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEE
Q 013068          390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVD  426 (450)
Q Consensus       390 ~~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVD  426 (450)
                             .+.-+.+.-.+..-.++.++....+.+|..
T Consensus        73 -------svv~v~~~d~pGvla~i~~~L~~~~InI~~  102 (144)
T 2f06_A           73 -------DVVGISCPNVPGALAKVLGFLSAEGVFIEY  102 (144)
T ss_dssp             -------EEEEEEEESSTTHHHHHHHHHHHTTCCEEE
T ss_pred             -------eEEEEEeCCCCcHHHHHHHHHHHCCCCEEE
Confidence                   233345555555556777777777777743

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.71  E-value=9.5e-08  Score=75.33  Aligned_cols=77  Identities=22%  Similarity=0.326  Sum_probs=63.9

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHhhcCceeeEEEecCCc
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDISNE  154 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~dlt~~  154 (450)
                      ..+.|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.+. .+...++++.++|+++-+|.+|..+..-
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~   81 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNL   81 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSC
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            3568999999999999999999999999999999987654223555554 4567899999999999999999877653

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.63  E-value=1.6e-07  Score=85.52  Aligned_cols=114  Identities=11%  Similarity=0.169  Sum_probs=84.2

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccC----EEEEEecC
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLID----LHEVQDIT  389 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLid----Vi~V~dlt  389 (450)
                      ++.|++...|+||++++|+++++++|+||.++....+  .+...|++++.+++...++|.++|.++.+    .+.+...+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~   83 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS   83 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            5899999999999999999999999999999888774  46777788887766678999999887653    55566655


Q ss_pred             CChhHHHhhheeEeecCccchH----HHHHHHHhcCcEEEEecCC
Q 013068          390 HLPFAERELILIKIAVNTAARR----DVLDIAKIFRARAVDVSDH  430 (450)
Q Consensus       390 ~~~~V~REL~LIKV~~~~~~R~----eI~~i~~iFrakIVDvs~~  430 (450)
                      ..+ -.++....++.+....|+    +|.++...+++.|.++...
T Consensus        84 ~~~-~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~  127 (192)
T 1u8s_A           84 PHD-HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ  127 (192)
T ss_dssp             CCC-CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCC-CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhh
Confidence            443 255555555655444554    4555566677877776443

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.62  E-value=9.9e-08  Score=76.36  Aligned_cols=68  Identities=15%  Similarity=0.232  Sum_probs=58.6

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC-hhHHHHHHHHHhcccCE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT-DESIGKLVQLLHKLIDL  382 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd-~~~ieQI~kQL~KLidV  382 (450)
                      ++++|++...|+||+|++|+++++.+|+||.++......  +...+++.+... ...+++|.++|+++-+-
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~   72 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT   72 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999998775  778888877643 35799999999987653

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.48  E-value=1.8e-07  Score=74.78  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=56.5

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hHHHHHHHHHhhcCceeeE
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVIK  147 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd-e~~ieqL~kQL~KLiDVi~  147 (450)
                      |.+.|++...|+||+|++|+++++++|+||.++......+...+++.+..+ ...+++|.++|+++-+...
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~   74 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN   74 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            678999999999999999999999999999999998765323356555432 3578999999988765533

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.21  E-value=5.9e-05  Score=69.31  Aligned_cols=78  Identities=18%  Similarity=0.161  Sum_probs=55.6

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC----CCCeeEEEEEEeC-ChhHHHHHHHHHhcc----cCEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE----KEGLSCITTVVPG-TDESIGKLVQLLHKL----IDLH  383 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te----~~~iSRiTIVV~g-d~~~ieQI~kQL~KL----idVi  383 (450)
                      .+|+|.+...|+||++++|+++|+++|.||..+......    ..+.-.|.+.+.. +... ++|.+.|.++    -=-+
T Consensus        92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a~~l~~di  170 (195)
T 2nyi_A           92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVEEEFGVDI  170 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHHHHcCeEE
Confidence            368999999999999999999999999999998877543    3466667766653 2334 7777777643    2234


Q ss_pred             EEEecCCC
Q 013068          384 EVQDITHL  391 (450)
Q Consensus       384 ~V~dlt~~  391 (450)
                      ++.++++.
T Consensus       171 ~~~~~~~~  178 (195)
T 2nyi_A          171 DLEEVVEG  178 (195)
T ss_dssp             EEEECC--
T ss_pred             EEEECccc
Confidence            55565544

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.99  E-value=2.2e-05  Score=75.26  Aligned_cols=81  Identities=20%  Similarity=0.217  Sum_probs=65.1

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC---CCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK---EGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~---~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++.....   .+...|+|-++..  .++.++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            4679999999999999999999999999999999977651   4788899666644  9999999999999999999886


Q ss_pred             CChhHH
Q 013068          390 HLPFAE  395 (450)
Q Consensus       390 ~~~~V~  395 (450)
                      .-.-++
T Consensus        81 ~~~~i~   86 (223)
T 1y7p_A           81 SFERVF   86 (223)
T ss_dssp             CHHHHT
T ss_pred             chhhhc
Confidence            554443

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=97.71  E-value=9.8e-05  Score=70.82  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=61.6

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----CC-cEEEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DK-ALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te----d~-~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      |..+|.+..+|+||+|+.|+.+++..+.||.++++....    +. ..+++-++..  .++.++++|+++-+|.+|+.+.
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~   80 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE   80 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence            567999999999999999999999999999999997764    31 2466556544  9999999999999999999886


Q ss_pred             Cchhhh
Q 013068          153 NEPHVE  158 (450)
Q Consensus       153 ~~~~V~  158 (450)
                      .-..++
T Consensus        81 ~~~~i~   86 (223)
T 1y7p_A           81 SFERVF   86 (223)
T ss_dssp             CHHHHT
T ss_pred             chhhhc
Confidence            654444

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.36  E-value=0.0026  Score=54.83  Aligned_cols=101  Identities=13%  Similarity=0.250  Sum_probs=74.1

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEEEecCCChhH
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEVQDITHLPFA  394 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V~dlt~~~~V  394 (450)
                      .|.|...|++|+|+.|+.+++..+.||.++.+.+.   +.  +.+.++ .+.+.+.++..+++++-++..+....-.+. 
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~~~~~-   75 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPS-   75 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESCCTT-
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEecCCcc-
Confidence            47899999999999999999999999999999665   54  555555 466789999999999999999887654332 


Q ss_pred             HHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEE
Q 013068          395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITL  434 (450)
Q Consensus       395 ~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~i  434 (450)
                                  ...+..+..+.+....-|+-+..+.-++
T Consensus        76 ------------~~~~~~l~~il~~~~~gvi~~D~~g~I~  103 (190)
T 2jhe_A           76 ------------EREHLALSALLEALPEPVLSVDMKSKVD  103 (190)
T ss_dssp             ------------THHHHHHHHHHHHCSSCEEEECTTCBEE
T ss_pred             ------------HHHHHHHHHHHHhCCCcEEEEcCCCCEE
Confidence                        1222345555555555555555544444

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.18  E-value=0.00081  Score=69.93  Aligned_cols=71  Identities=14%  Similarity=0.204  Sum_probs=57.5

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEe-CChhHHHHHHHHHhcccCEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVP-GTDESIGKLVQLLHKLIDLH  383 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi  383 (450)
                      .+|.|.+.|.|+||||.+|+++|+..|++|+|+.-.+.. ..+...+.|+++ ..+..+++.+++|++|-.|.
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            579999999999999999999999999999998876543 233478888887 47778999999999987653

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.11  E-value=0.0046  Score=53.33  Aligned_cols=69  Identities=12%  Similarity=0.304  Sum_probs=58.2

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEe-CChHHHHHHHHHhhcCceeeEEEecC
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVS-GTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~-gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      .|.|...|++|+|+.|+.+++..++||.++.+.+.   +.+.+.+. .+.+.+..|..+++++-++..+....
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~   71 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP   71 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence            47899999999999999999999999999999655   54555554 45678999999999999999887644

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.10  E-value=0.0019  Score=66.11  Aligned_cols=74  Identities=14%  Similarity=0.293  Sum_probs=62.3

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      ..+.|.+.=+|+||++.+|+.+|++.|+||.++.++...+.+++.+-+++....-+.+.++|+++-.|++|..+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            35678899999999999999999999999999999985554567777877644667899999999999998754

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.02  E-value=0.0036  Score=64.06  Aligned_cols=73  Identities=15%  Similarity=0.282  Sum_probs=63.5

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      .+.|.+.=+|+||++.+|+.+|++.|+||.++.++.  ..+..-|.+-+++....-+.+.++|+++..|++|..+
T Consensus       331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l  403 (404)
T 1sc6_A          331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL  403 (404)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence            456888889999999999999999999999999998  6678878888887644667999999999999999754

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=96.92  E-value=0.0048  Score=55.13  Aligned_cols=126  Identities=13%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             EEEEEEE-EcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCCh-HHHHHHHHHhhcCceeeEEEecCCc
Q 013068           79 RHTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNE  154 (450)
Q Consensus        79 ~~tISVl-VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde-~~ieqL~kQL~KLiDVi~V~dlt~~  154 (450)
                      ...|+++ +.|+||.+.+|.+.|++.|+||+.++.+.+.+ |  .++++++.++ +...++.+++.+-.....+      
T Consensus        25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i------   97 (167)
T 2re1_A           25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASI------   97 (167)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEE------
T ss_pred             EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceE------
Confidence            3467777 89999999999999999999999999876654 4  4888887533 2233333333222222111      


Q ss_pred             hhhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068          155 PHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS  214 (450)
Q Consensus       155 ~~V~RELaLIKV~~~~-----~~r~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~  214 (450)
                       .+.+.++++-|-...     .--..+++....++..|  +..++.++.+=+-  .+..+..++.|.
T Consensus        98 -~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv~--~~d~~~av~~Lh  161 (167)
T 2re1_A           98 -DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLID--EKYMELATRVLH  161 (167)
T ss_dssp             -EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEEE--GGGHHHHHHHHH
T ss_pred             -EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEEe--HHHHHHHHHHHH
Confidence             245677888876543     23457888887777777  4445565555553  344445555443

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=96.83  E-value=0.0031  Score=57.77  Aligned_cols=68  Identities=22%  Similarity=0.272  Sum_probs=50.7

Q ss_pred             cccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----CCcE--EEEEEeCC-hHHHHHHHHHhhcC
Q 013068           74 ASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----DKAL--FTIVVSGT-ERVLRQVVEQLNKL  142 (450)
Q Consensus        74 ~~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te----d~~i--iTIVV~gd-e~~ieqL~kQL~KL  142 (450)
                      .....+++|.|.-.|+||++.+|+++|+++|.||..+......    ..++  |++.+..+ ... ++|.+.|.++
T Consensus        88 ~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~  162 (195)
T 2nyi_A           88 SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRV  162 (195)
T ss_dssp             CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHH
T ss_pred             CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHH
Confidence            3345779999999999999999999999999999999887443    3344  55555432 334 6777766543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.76  E-value=0.0036  Score=62.10  Aligned_cols=69  Identities=10%  Similarity=0.174  Sum_probs=54.3

Q ss_pred             CCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhc
Q 013068          310 SGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHK  378 (450)
Q Consensus       310 ~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~K  378 (450)
                      .|+.+++|++...|+||+.++||+.++.+|.||..++.......+.--|.+.++.++  ..+++|...|..
T Consensus        18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~   88 (302)
T 3o1l_A           18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP   88 (302)
T ss_dssp             CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred             cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence            578889999999999999999999999999999999887655566666666666432  346666666643

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.72  E-value=0.097  Score=56.12  Aligned_cols=223  Identities=14%  Similarity=0.196  Sum_probs=124.5

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-EEEEEEeCCh-HHHHHHHHHhhcCc-------eeeEEE
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-LFTIVVSGTE-RVLRQVVEQLNKLV-------NVIKVE  149 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-iiTIVV~gde-~~ieqL~kQL~KLi-------DVi~V~  149 (450)
                      .-+|. .+.++||.+.||-+.|++.|+||+-++.+..+... -+++++..++ ....++.+++.+-+       ...+|.
T Consensus       272 ~i~i~-~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~  350 (600)
T 3l76_A          272 KVALL-RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEII  350 (600)
T ss_dssp             EEEEE-EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEE
T ss_pred             EEEEe-CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeE
Confidence            33444 56789999999999999999999999877655432 3777776543 22233333332211       112222


Q ss_pred             ecCCchhhhhheeeEEEeCC-----CCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhcc-CCcEEEee
Q 013068          150 DISNEPHVERELMLIKLNGD-----TSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSK-FGIKELAR  223 (450)
Q Consensus       150 dlt~~~~V~RELaLIKV~~~-----~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~-fGIlEiaR  223 (450)
                             +.+.+++|-|--.     +.--..+++.....+.+|.-++.....|-+.=+.+..+..++.|.. |..-.   
T Consensus       351 -------~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~---  420 (600)
T 3l76_A          351 -------VEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTL---  420 (600)
T ss_dssp             -------EECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCB---
T ss_pred             -------ecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccC---
Confidence                   4456777776533     2233456666666665654443333333344444455555555543 22110   


Q ss_pred             ccceeeecCcCCCCcccccccccCCchhhhhccccccccccccccCCCCCCCCCCCCceeecCCCCCCCccccccccccc
Q 013068          224 TGKIALRREKLGDTAPFWNFSAASYPDLEEKKRTGIFIPETNQSLNGNANVDTSSRGDVYPVEPYDDFSANQVLDAHWGI  303 (450)
Q Consensus       224 TG~iAl~Rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~vl~~~~~~  303 (450)
                                   +.                              ..        .+ -++.|       .++..   |+
T Consensus       421 -------------t~------------------------------~~--------~~-~~~~~-------~~~v~---Gi  438 (600)
T 3l76_A          421 -------------SP------------------------------PK--------NQ-TDTSH-------LPAVR---GV  438 (600)
T ss_dssp             -------------CC------------------------------CC--------CC-CC----------CCSCC---EE
T ss_pred             -------------CC------------------------------cc--------cc-ccccc-------cCceE---EE
Confidence                         00                              00        00 00000       11111   22


Q ss_pred             cccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC--CC--eeEEEEEEeCCh-hHHHHHHHHHhc
Q 013068          304 LYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK--EG--LSCITTVVPGTD-ESIGKLVQLLHK  378 (450)
Q Consensus       304 ~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~--~~--iSRiTIVV~gd~-~~ieQI~kQL~K  378 (450)
                      -.+.+..   +-++. -+.|+||+..||-+.+++.|+|++-+.....+.  .+  ...|+++++.++ +...++.+++.+
T Consensus       439 a~~~~~a---~i~i~-~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~  514 (600)
T 3l76_A          439 ALDQDQA---QIAIR-HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIK  514 (600)
T ss_dssp             EEECSEE---EEEEE-EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred             EeeCCEE---EEEEe-cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHH
Confidence            2222322   23443 589999999999999999999999999988764  24  678999998432 234444444443

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.60  E-value=0.0049  Score=60.84  Aligned_cols=70  Identities=16%  Similarity=0.225  Sum_probs=50.6

Q ss_pred             CCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCC----hhHHHHHHHHHhc
Q 013068          309 PSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGT----DESIGKLVQLLHK  378 (450)
Q Consensus       309 ~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd----~~~ieQI~kQL~K  378 (450)
                      +..|++++|++...|+||+.++||+.++.+|.||..++.......+.--|.+.++.+    ...++++...|+.
T Consensus         5 ~~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~   78 (292)
T 3lou_A            5 PQRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP   78 (292)
T ss_dssp             ---CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred             cCCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence            344668999999999999999999999999999999988754445555555555443    2346666666543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.49  E-value=0.011  Score=61.19  Aligned_cols=73  Identities=15%  Similarity=0.274  Sum_probs=61.5

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      .|.|.+.=+|.||+|.+|+.+|+..|+||+...-....+-++.-+=+++.....+.+.++|+++-.|++|..+
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            5789999999999999999999999999999997666666665555653355678999999999999998754

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.49  E-value=0.0061  Score=60.51  Aligned_cols=67  Identities=10%  Similarity=0.109  Sum_probs=52.8

Q ss_pred             ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhhc
Q 013068           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLNK  141 (450)
Q Consensus        75 ~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~K  141 (450)
                      +++++++|++.-.|+||..++||+.++.+|.||..++.......++  |++.++.++  ...++|.+.|+.
T Consensus        18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~   88 (302)
T 3o1l_A           18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP   88 (302)
T ss_dssp             CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred             cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence            4678899999999999999999999999999999999876555666  566666433  346666666543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.47  E-value=0.007  Score=59.48  Aligned_cols=66  Identities=12%  Similarity=0.028  Sum_probs=49.8

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-hHHHHHHHHHh
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLH  377 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-~~ieQI~kQL~  377 (450)
                      |.+++|++...|+||+.++||+.++.+|.||..++.......+.--|.+.++.++ ..++++...|.
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~   72 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLA   72 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHH
Confidence            4568999999999999999999999999999999987545556655666665422 24555655553

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.43  E-value=0.0057  Score=64.25  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      .|+|-+...|+||++.+|+.++...|+||.++.++..+..+..=|.|.++..  .-+.+.++|.++.+|.+|..+
T Consensus       454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred             ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence            3899999999999999999999999999999999998887877788888743  335566777777788777654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.42  E-value=0.0042  Score=65.26  Aligned_cols=72  Identities=15%  Similarity=0.274  Sum_probs=57.0

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc--EEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA--LFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      ..|.|-+...|+||++.+|+.++...|+||..+.++.....+  ++.|.++..  .-+.+.++|.++-+|.+|..+
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v  526 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV  526 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence            358999999999999999999999999999999999876543  577777642  335566677777777776644

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.38  E-value=0.0082  Score=59.05  Aligned_cols=109  Identities=11%  Similarity=0.165  Sum_probs=67.2

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh--hHHHHHHHHHhcc---cCE-EEEEe
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD--ESIGKLVQLLHKL---IDL-HEVQD  387 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~--~~ieQI~kQL~KL---idV-i~V~d  387 (450)
                      +++|++...|+||+.++||+.++.+|.||..++.-.+...+.--|.+.++.++  ..++++...|+.+   .++ +++.+
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~   85 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRD   85 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCEEEeec
Confidence            58999999999999999999999999999999987555556555555554322  3466666666433   222 55555


Q ss_pred             cCCChhHHHhhheeEeecCccchHHHHHHHH--hcCcEEEEe
Q 013068          388 ITHLPFAERELILIKIAVNTAARRDVLDIAK--IFRARAVDV  427 (450)
Q Consensus       388 lt~~~~V~REL~LIKV~~~~~~R~eI~~i~~--iFrakIVDv  427 (450)
                      -....   |  ..|=++-.+.+-..+++-++  ...++|+-|
T Consensus        86 ~~~~~---r--i~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V  122 (288)
T 3obi_A           86 RETRR---K--VMLLVSQSDHCLADILYRWRVGDLHMIPTAI  122 (288)
T ss_dssp             TTSCE---E--EEEEECSCCHHHHHHHHHHHTTSSCEEEEEE
T ss_pred             cCCCc---E--EEEEEcCCCCCHHHHHHHHHCCCCCeEEEEE
Confidence            43211   1  12223334444445554443  234555544

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.36  E-value=0.0073  Score=59.37  Aligned_cols=64  Identities=3%  Similarity=-0.074  Sum_probs=49.0

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh-HHHHHHHHHhh
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE-RVLRQVVEQLN  140 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde-~~ieqL~kQL~  140 (450)
                      |++++|++.-.|+||..++||+.|+.+|.||..++.......+.  |++.++.++ ...++|.+.++
T Consensus         6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~   72 (286)
T 3n0v_A            6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLA   72 (286)
T ss_dssp             -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHH
Confidence            55689999999999999999999999999999999875455565  666666432 34566665553

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.33  E-value=0.0073  Score=59.58  Aligned_cols=66  Identities=12%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCC----hHHHHHHHHHhhc
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGT----ERVLRQVVEQLNK  141 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gd----e~~ieqL~kQL~K  141 (450)
                      .+++++|++.-.|+||..++||+.++.+|.||..++.......+.  |++.++.+    ....++|...++.
T Consensus         7 ~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~   78 (292)
T 3lou_A            7 RPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP   78 (292)
T ss_dssp             -CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence            456789999999999999999999999999999999875455565  56666544    2346666665543

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.29  E-value=0.0097  Score=58.51  Aligned_cols=110  Identities=15%  Similarity=0.155  Sum_probs=68.5

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcc---cCE-EEEEec
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKL---IDL-HEVQDI  388 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KL---idV-i~V~dl  388 (450)
                      ++++|++...|+||+.++|++.++.+|.||..++.-.+...+.--|.+.++.+...++++...|+.+   .++ +++.+-
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~~   85 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWWFRPR   85 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcCCeeEeecc
Confidence            4689999999999999999999999999999999876556677667777765433344555555332   222 556554


Q ss_pred             CCChhHHHhhheeEeecCccchHHHHHHHH--hcCcEEEEe
Q 013068          389 THLPFAERELILIKIAVNTAARRDVLDIAK--IFRARAVDV  427 (450)
Q Consensus       389 t~~~~V~REL~LIKV~~~~~~R~eI~~i~~--iFrakIVDv  427 (450)
                      ....   |  ..|=++-.+.+-..+++-++  ...++|+-|
T Consensus        86 ~~~~---r--i~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V  121 (287)
T 3nrb_A           86 TDRK---K--VVIMVSKFDHCLGDLLYRHRLGELDMEVVGI  121 (287)
T ss_dssp             TCCC---E--EEEEECSCCHHHHHHHHHHHHTSSCCEEEEE
T ss_pred             CCCc---E--EEEEEeCCCcCHHHHHHHHHCCCCCeEEEEE
Confidence            3221   1  12223334444445554443  235666654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.29  E-value=0.0069  Score=62.95  Aligned_cols=72  Identities=11%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             ccceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC-C--CcEEEEEEe-CChHHHHHHHHHhhcCceee
Q 013068           75 SKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV-D--KALFTIVVS-GTERVLRQVVEQLNKLVNVI  146 (450)
Q Consensus        75 ~~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d--~~iiTIVV~-gde~~ieqL~kQL~KLiDVi  146 (450)
                      +-..+|.|.+.+.|+||||.+|+++|+..|++|+|+.-.+.. .  ...+.|+++ ..+..+++.+++|++|-.|.
T Consensus       355 ~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~  430 (444)
T 3mtj_A          355 AVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA  430 (444)
T ss_dssp             GCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred             HcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence            345789999999999999999999999999999999876542 1  123555565 56888999999999986654

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.19  E-value=0.01  Score=58.39  Aligned_cols=63  Identities=13%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCCh--HHHHHHHHHhh
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTE--RVLRQVVEQLN  140 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde--~~ieqL~kQL~  140 (450)
                      .+++|++.-.|+||..++||+.++.+|.||..++...+...+.  |++.++.++  ...++|.+.|+
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~   71 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFG   71 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHH
Confidence            3689999999999999999999999999999999875555665  556565433  35666666663

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=96.03  E-value=0.013  Score=57.73  Aligned_cols=62  Identities=15%  Similarity=0.167  Sum_probs=46.8

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHh
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQL  139 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL  139 (450)
                      ++++|++.-.|+||..++||+.++.+|.||..++...+...++  |++.++.+....++|.+.+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f   69 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAF   69 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHH
Confidence            4689999999999999999999999999999999876566676  5666665432333444444

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=95.82  E-value=0.02  Score=51.12  Aligned_cols=113  Identities=10%  Similarity=0.135  Sum_probs=70.4

Q ss_pred             EEEEE-EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh-hHHHHHHHHHhcccCEEEEEecCCChh
Q 013068          316 TLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPF  393 (450)
Q Consensus       316 tLSil-VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~-~~ieQI~kQL~KLidVi~V~dlt~~~~  393 (450)
                      .|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ +...++++++.++ +...++.+++.+-+....       -.
T Consensus        27 ~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~-------i~   98 (167)
T 2re1_A           27 RINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAAS-------ID   98 (167)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSE-------EE
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCce-------EE
Confidence            45665 79999999999999999999999999876654 6677999998543 223333333322222211       12


Q ss_pred             HHHhhheeEeecCc-----cchHHHHHHHHhcCcEEE--EecCCEEEEEE
Q 013068          394 AERELILIKIAVNT-----AARRDVLDIAKIFRARAV--DVSDHTITLEV  436 (450)
Q Consensus       394 V~REL~LIKV~~~~-----~~R~eI~~i~~iFrakIV--Dvs~~si~iE~  436 (450)
                      +.+.+++|-|-...     .--..+++....++-+|.  ..+..++.+=+
T Consensus        99 ~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv  148 (167)
T 2re1_A           99 GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLI  148 (167)
T ss_dssp             EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEE
T ss_pred             ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEE
Confidence            34567777775543     123477777777777774  44555555544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=95.76  E-value=0.079  Score=52.78  Aligned_cols=140  Identities=15%  Similarity=0.186  Sum_probs=86.1

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChH--HHHHHHHHhhcCc---e-eeEE
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTER--VLRQVVEQLNKLV---N-VIKV  148 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~--~ieqL~kQL~KLi---D-Vi~V  148 (450)
                      .+++.|++.-.|+||+.++|++.++++|.||..+....  ..+.  |.+.+..++.  ..++|.+.|..+-   . -+++
T Consensus        10 ~~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~   87 (415)
T 3p96_A           10 KVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVV--IRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSI   87 (415)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEE--ETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEE--ECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEE
Confidence            35689999999999999999999999999999998765  3355  5556665553  3467777665542   2 2344


Q ss_pred             EecCCchhhhh-heeeEEEeCC---CCCHHHHHHHHHhcCcEEEEecCCE------EEEEEeCChh---HHH-HHHHHhc
Q 013068          149 EDISNEPHVER-ELMLIKLNGD---TSTWPEIMWLVDIFRAKVVDISEHA------LTIEVTGDPG---KMV-AVQRNLS  214 (450)
Q Consensus       149 ~dlt~~~~V~R-ELaLIKV~~~---~~~r~eI~~l~~~frAkIVDvs~~s------l~iEvTG~~~---KId-afi~~L~  214 (450)
                      ...+......+ ...++-+-..   +..-.+|..+...++.+|-++..-+      +-+.+.+++.   .+. ++.+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~  167 (415)
T 3p96_A           88 ERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSS  167 (415)
T ss_dssp             EECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             EECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhh
Confidence            44444322222 2333333222   2334466666666779888775544      3355656543   333 3444455


Q ss_pred             cCCc
Q 013068          215 KFGI  218 (450)
Q Consensus       215 ~fGI  218 (450)
                      .+++
T Consensus       168 ~~~v  171 (415)
T 3p96_A          168 EEHV  171 (415)
T ss_dssp             HHTC
T ss_pred             hcCc
Confidence            6675

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=95.67  E-value=0.043  Score=56.70  Aligned_cols=73  Identities=18%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      .|-|.+.=+|.||+|.+|+.+|+..|+||+...-....+  +.-..+=+++-.+.-+.+.++|+++..|++|..+
T Consensus       343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~--~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~  415 (416)
T 3k5p_A          343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGE--VGYLVMEADGVGEASDAVLQEIREIPGTIRARLL  415 (416)
T ss_dssp             SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSS--CEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred             ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCc--eEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence            478999999999999999999999999999988665544  4334444443356778999999999999999754

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=95.64  E-value=0.092  Score=52.32  Aligned_cols=117  Identities=13%  Similarity=0.065  Sum_probs=75.6

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh--HHHHHHHHHhcc---cC-EEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--SIGKLVQLLHKL---ID-LHEVQ  386 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~--~ieQI~kQL~KL---id-Vi~V~  386 (450)
                      .+++|++...|+||+.++|++.++++|.||..+.....  .+.--|.+.+..++.  ..++|.+.|..+   .. -+++.
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence            46799999999999999999999999999999888653  455556666665443  346777776554   22 35666


Q ss_pred             ecCCChhHHH-hhheeEeecCc---cchHHHHHHHHhcCcEEEEecCCE
Q 013068          387 DITHLPFAER-ELILIKIAVNT---AARRDVLDIAKIFRARAVDVSDHT  431 (450)
Q Consensus       387 dlt~~~~V~R-EL~LIKV~~~~---~~R~eI~~i~~iFrakIVDvs~~s  431 (450)
                      +.+..+...+ ...++-+-...   ..-.+|.++...++.+|-++..-+
T Consensus        89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~  137 (415)
T 3p96_A           89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVS  137 (415)
T ss_dssp             ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeecc
Confidence            6555432222 23344443332   222355555555678888776544

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=95.22  E-value=0.2  Score=45.18  Aligned_cols=127  Identities=20%  Similarity=0.265  Sum_probs=76.4

Q ss_pred             EEEEE-EEcCchhHHHHHHHHHhccCceeeeEeeeecC--CCc-EEEEEEeCChHHHHHHHHHhhcC---ceeeEEEecC
Q 013068           80 HTISV-FVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKA-LFTIVVSGTERVLRQVVEQLNKL---VNVIKVEDIS  152 (450)
Q Consensus        80 ~tISV-lVeN~pGVL~RIagLFsRRGyNIeSLsvg~te--d~~-iiTIVV~gde~~ieqL~kQL~KL---iDVi~V~dlt  152 (450)
                      -.|+| .+.|+||.+.+|...|++.|+||+.++.+...  +.+ .+++++..++  .++..+.|+++   .....+    
T Consensus        16 ~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~~v----   89 (178)
T 2dtj_A           16 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWTNV----   89 (178)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCSEE----
T ss_pred             EEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCCeE----
Confidence            35566 57999999999999999999999999876432  222 3677666432  23334444443   222222    


Q ss_pred             CchhhhhheeeEEEeCCCC-CH----HHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc-CC
Q 013068          153 NEPHVERELMLIKLNGDTS-TW----PEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK-FG  217 (450)
Q Consensus       153 ~~~~V~RELaLIKV~~~~~-~r----~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~~-fG  217 (450)
                         .+.+++++|-|-.... ..    ..+++.....+-.|  +.-++.++.+=+  +.+..+..++.|.. |+
T Consensus        90 ---~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh~~F~  157 (178)
T 2dtj_A           90 ---LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ  157 (178)
T ss_dssp             ---EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHHT
T ss_pred             ---EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHc
Confidence               2456788888865432 22    25555555555565  444555544444  55666666666553 44

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=95.07  E-value=0.14  Score=50.27  Aligned_cols=73  Identities=15%  Similarity=0.241  Sum_probs=59.7

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeC--ChhHHHHHHHHHhcccCEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--d~~~ieQI~kQL~KLidVi~V  385 (450)
                      .+-.|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=++|  ++..+.+..+.|++.-.-+++
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki  274 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV  274 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence            3567888889999999999999999999999999999875 466667777776  456788999999887665554

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=94.23  E-value=0.18  Score=49.61  Aligned_cols=71  Identities=20%  Similarity=0.345  Sum_probs=55.4

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHhhcCceeeE
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNVIK  147 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTIVV~g--de~~ieqL~kQL~KLiDVi~  147 (450)
                      -.+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... + + |-|-+.|  ++..+++..+.|++...-++
T Consensus       198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~k  273 (283)
T 2qmx_A          198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVK  273 (283)
T ss_dssp             EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEE
T ss_pred             CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEE
Confidence            356678888899999999999999999999999999887754 3 3 4454554  56678888888887754433

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=94.10  E-value=0.17  Score=50.47  Aligned_cols=72  Identities=21%  Similarity=0.373  Sum_probs=57.6

Q ss_pred             CCceEEEEEEEE-eccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeC--ChhHHHHHHHHHhcccC
Q 013068          310 SGLRSHTLSMLV-NNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPG--TDESIGKLVQLLHKLID  381 (450)
Q Consensus       310 ~~~~~htLSilV-eN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~g--d~~~ieQI~kQL~KLid  381 (450)
                      ++-.|-+|.+.+ +|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+.|  ++..+.+..+.|++.-.
T Consensus       197 ~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~  272 (313)
T 3mwb_A          197 TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP  272 (313)
T ss_dssp             CSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred             CCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence            444567888888 4999999999999999999999999999764 566677777776  45678888888877643

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=94.04  E-value=0.46  Score=42.07  Aligned_cols=120  Identities=16%  Similarity=0.191  Sum_probs=68.1

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCChH-HHHHHHHHhhcCceeeEEEecCCchhhhhhe
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTER-VLRQVVEQLNKLVNVIKVEDISNEPHVEREL  161 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~--iiTIVV~gde~-~ieqL~kQL~KLiDVi~V~dlt~~~~V~REL  161 (450)
                      +.|+||.+.||.+.|++.|+||+.++.+.+. +.|  .+++++..++. ...++.+++.+-... .+.       +.+.+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999987653 344  48888875332 222222222111221 222       34566


Q ss_pred             eeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhcc
Q 013068          162 MLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLSK  215 (450)
Q Consensus       162 aLIKV~~~~-----~~r~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~~  215 (450)
                      +++-|-...     .--..+++.....+-.|  +..++.  .+-+.=+.+..+..++.|..
T Consensus        96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~--~is~vv~~~d~~~Av~~Lh~  154 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEV--RISVIIPAEYAEAALRAVHQ  154 (167)
T ss_dssp             EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSS--EEEEEEEGGGHHHHHHHHHH
T ss_pred             EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCC--EEEEEEeHHHHHHHHHHHHH
Confidence            666664432     11234555555545555  433333  33333344555666665554

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=93.90  E-value=0.19  Score=44.27  Aligned_cols=50  Identities=6%  Similarity=0.059  Sum_probs=42.7

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      .++||++.|+.+.|++.|+||+-++.++.      +++++++..+ .++++.+.|.+
T Consensus        29 ~~~~g~~~~if~~La~~~I~vd~I~~s~~------~Isf~v~~~~-~~~~il~~l~~   78 (157)
T 3mah_A           29 LLSWHFMRKLFEIFEFYQEPVDMVATSEV------GVSLTIDNDK-NLPDIVRALSD   78 (157)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSCEECCSS------EEEEEESCCT-THHHHHHHHTT
T ss_pred             CCchhHHHHHHHHHHHcCCCEEEEEecCC------EEEEEECChH-HHHHHHHHHhc
Confidence            47899999999999999999999986542      8999998654 67888888877

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=93.82  E-value=0.37  Score=43.85  Aligned_cols=123  Identities=12%  Similarity=0.100  Sum_probs=69.4

Q ss_pred             EEcCchhHHHHHHHHHhccCceeeeEeeeecC-CCcE--EEEEEeCCh-HHHHHHHHHhhcCceeeEEEecCCchhhhhh
Q 013068           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNV-DKAL--FTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISNEPHVERE  160 (450)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~i--iTIVV~gde-~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RE  160 (450)
                      -+.|+||.+.||.+.|++.|+||+.++...++ +.+.  ++++++.++ ....++.+++.+-....+|.       +...
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~-------~~~~   95 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL-------YDDH   95 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEE-------EESC
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEE-------EeCC
Confidence            47899999999999999999999999876554 2454  888887544 22333333332212222222       3456


Q ss_pred             eeeEEEeCCC-CC----HHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 013068          161 LMLIKLNGDT-ST----WPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS  214 (450)
Q Consensus       161 LaLIKV~~~~-~~----r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~  214 (450)
                      +++|-|--.. ..    -..+++.....+-+|.-++...+.|-+.=+.+..+..++.|.
T Consensus        96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aLH  154 (181)
T 3s1t_A           96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALH  154 (181)
T ss_dssp             EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHHH
T ss_pred             EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHH
Confidence            7777764322 12    224455555445555444333333334444455555555554

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=93.78  E-value=0.14  Score=46.18  Aligned_cols=112  Identities=14%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             EEEE-EEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCChhHHHHHHHHHhcc---cCEEEEEecCC
Q 013068          316 TLSM-LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGTDESIGKLVQLLHKL---IDLHEVQDITH  390 (450)
Q Consensus       316 tLSi-lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd~~~ieQI~kQL~KL---idVi~V~dlt~  390 (450)
                      .|++ .+.|+||.+.+|...+++.|+||+-++.+.... .+-..|+++++.++  .++..+.|+++   .....+     
T Consensus        17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~~~~~~~~~v-----   89 (178)
T 2dtj_A           17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKLQVQGNWTNV-----   89 (178)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTTTTTTTCSEE-----
T ss_pred             EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHHHHhcCCCeE-----
Confidence            3444 468999999999999999999999998764322 23667888887533  34444555543   222122     


Q ss_pred             ChhHHHhhheeEeecCcc-ch----HHHHHHHHhcCcEE--EEecCCEEEEEE
Q 013068          391 LPFAERELILIKIAVNTA-AR----RDVLDIAKIFRARA--VDVSDHTITLEV  436 (450)
Q Consensus       391 ~~~V~REL~LIKV~~~~~-~R----~eI~~i~~iFrakI--VDvs~~si~iE~  436 (450)
                        .+..++++|-|-...- .+    ..+++.....+-+|  +.-++.++.+=+
T Consensus        90 --~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV  140 (178)
T 2dtj_A           90 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI  140 (178)
T ss_dssp             --EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE
T ss_pred             --EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE
Confidence              2345677777754322 22    24444444444444  334444444433

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=93.67  E-value=0.24  Score=45.08  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             EEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCCh
Q 013068          320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD  366 (450)
Q Consensus       320 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd~  366 (450)
                      -+.|+||++.||.+.|++.|+||+-++...++ +.+...++++++.++
T Consensus        23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~   70 (181)
T 3s1t_A           23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV   70 (181)
T ss_dssp             EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT
T ss_pred             cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH
Confidence            36899999999999999999999999877665 367888999998654

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.66  E-value=0.18  Score=49.24  Aligned_cols=69  Identities=13%  Similarity=0.207  Sum_probs=54.0

Q ss_pred             eEEEEEEEE---cCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E---EEEEEeCChHHHHHHHHHhhcCceeeE
Q 013068           78 KRHTISVFV---GDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L---FTIVVSGTERVLRQVVEQLNKLVNVIK  147 (450)
Q Consensus        78 ~~~tISVlV---eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i---iTIVV~gde~~ieqL~kQL~KLiDVi~  147 (450)
                      .+-.|.+.+   .|+||.|.++.+.|+.||+|+..|---|+... + +   +.+. +-++..+.+..+.|++...-++
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~k  261 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVE  261 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEE
Confidence            455777788   89999999999999999999999999887654 2 3   3444 5566778888888887755444

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=93.61  E-value=0.28  Score=48.97  Aligned_cols=67  Identities=22%  Similarity=0.369  Sum_probs=51.6

Q ss_pred             cceEEEEEEEE-cCchhHHHHHHHHHhccCceeeeEeeeecCCC--cE-EEEEEeC--ChHHHHHHHHHhhcC
Q 013068           76 KVKRHTISVFV-GDESGIINRIAGVFARRGYNIESLAVGLNVDK--AL-FTIVVSG--TERVLRQVVEQLNKL  142 (450)
Q Consensus        76 ~~~~~tISVlV-eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~i-iTIVV~g--de~~ieqL~kQL~KL  142 (450)
                      +..+-.|.+.+ +|+||.|.++.+.|+.||+|...|---|+...  .+ |-|-+.|  ++..+.+..+.|++.
T Consensus       198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~  270 (313)
T 3mwb_A          198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRI  270 (313)
T ss_dssp             SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHh
Confidence            44567777888 49999999999999999999999998887654  23 5555554  566777777777665

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=93.59  E-value=0.099  Score=46.43  Aligned_cols=106  Identities=13%  Similarity=0.147  Sum_probs=62.7

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCCh-hHHHHHHHHHhcccCEEEEEecCCChhHHHhh
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLPFAEREL  398 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd~-~~ieQI~kQL~KLidVi~V~dlt~~~~V~REL  398 (450)
                      +.|+||++.||.+.+++.|+||+-++.+.+. +.+...|+++++.++ +...++.+++.+-... .+.       +++.+
T Consensus        24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~   95 (167)
T 2dt9_A           24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI   95 (167)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred             CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence            4899999999999999999999999987652 345677999998543 2233333332222222 332       34566


Q ss_pred             heeEeecCccc-h----HHHHHHHHhcCcEE--EEecCCEEEE
Q 013068          399 ILIKIAVNTAA-R----RDVLDIAKIFRARA--VDVSDHTITL  434 (450)
Q Consensus       399 ~LIKV~~~~~~-R----~eI~~i~~iFrakI--VDvs~~si~i  434 (450)
                      +++-|-...-. +    ..+++.....+-+|  +.-++.++.+
T Consensus        96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~  138 (167)
T 2dt9_A           96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRISV  138 (167)
T ss_dssp             EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEEEE
T ss_pred             EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEEEE
Confidence            77766543311 2    24444444434444  4444444443

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=92.90  E-value=0.21  Score=52.04  Aligned_cols=73  Identities=11%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-cEEEEEE---eCChHHHHHHHHHhhcC-ceeeEE
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-ALFTIVV---SGTERVLRQVVEQLNKL-VNVIKV  148 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~iiTIVV---~gde~~ieqL~kQL~KL-iDVi~V  148 (450)
                      +..+-.|.+.+.|+||.|.++.+.|+.+|+|+..|---|+... +-..+-|   +.++..+.++.+.|.+. ..-+++
T Consensus        31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vki  108 (429)
T 1phz_A           31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHE  108 (429)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEE
Confidence            4456778888899999999999999999999999998887644 3222222   33455688888888888 544444

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=92.15  E-value=0.8  Score=46.60  Aligned_cols=130  Identities=16%  Similarity=0.244  Sum_probs=79.1

Q ss_pred             EEEEEEE-EcCchhHHHHHHHHHhccCceeeeEeeeecC-CCc--EEEEEEeCCh-HHHHHHHHHhhcCceeeEEEecCC
Q 013068           79 RHTISVF-VGDESGIINRIAGVFARRGYNIESLAVGLNV-DKA--LFTIVVSGTE-RVLRQVVEQLNKLVNVIKVEDISN  153 (450)
Q Consensus        79 ~~tISVl-VeN~pGVL~RIagLFsRRGyNIeSLsvg~te-d~~--iiTIVV~gde-~~ieqL~kQL~KLiDVi~V~dlt~  153 (450)
                      ...|++. +.|+||.+.||.+.|++.|+||+.++...++ ..+  .++++++.++ ....++.+++.+-+..-.|     
T Consensus       264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v-----  338 (421)
T 3ab4_A          264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV-----  338 (421)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE-----
T ss_pred             EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE-----
Confidence            3466777 7999999999999999999999999763332 134  4888888533 2334444444333332222     


Q ss_pred             chhhhhheeeEEEeCCC-----CCHHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 013068          154 EPHVERELMLIKLNGDT-----STWPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFG  217 (450)
Q Consensus       154 ~~~V~RELaLIKV~~~~-----~~r~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~-~fG  217 (450)
                        .+++.++++-|-...     .--..+++.....+-.|  +..++.++.+=+  +.+..+..++.|. .|.
T Consensus       339 --~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV--~~~d~~~Av~~Lh~~f~  406 (421)
T 3ab4_A          339 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALHEQFQ  406 (421)
T ss_dssp             --EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHHHHTT
T ss_pred             --EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHHHHHh
Confidence              245678888875532     22346666665555555  555655555544  3444555555555 354

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=92.07  E-value=0.57  Score=47.03  Aligned_cols=70  Identities=19%  Similarity=0.287  Sum_probs=53.5

Q ss_pred             EEEEEEe--ccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC--hhHHHHHHHHHhcccCEEEE
Q 013068          316 TLSMLVN--NTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT--DESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       316 tLSilVe--N~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd--~~~ieQI~kQL~KLidVi~V  385 (450)
                      ++.+.+.  |+||.|.++.+.|++||+|+..|.--|+.. ++-..+-|-++|.  +..+.+..+.|++.-.-+++
T Consensus       208 s~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki  282 (329)
T 3luy_A          208 SVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT  282 (329)
T ss_dssp             EEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence            4444443  799999999999999999999999999865 4555666667664  56788888888887655444

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=92.05  E-value=0.65  Score=45.30  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             EEEEEEEE---eccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          314 SHTLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       314 ~htLSilV---eN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      +-.|.+.+   .|+||.|.++.+.|+.||+|+..|.--|+.. ++-..+-|=+. -++..+.+..++|++.-.-+++
T Consensus       186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~~~~ki  262 (267)
T 2qmw_A          186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM  262 (267)
T ss_dssp             CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhcCeEEE
Confidence            45777888   8999999999999999999999999999865 45555555454 3556788888888877654444

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=91.62  E-value=0.96  Score=37.50  Aligned_cols=70  Identities=21%  Similarity=0.337  Sum_probs=62.3

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeee-ecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH  383 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg-~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi  383 (450)
                      +-+.++|.|+|+--+-.+|=.++++.|-.|.. -+| |..+.+++=|+++++|+.+.+..+...|.+|..|.
T Consensus         6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            45799999999998888999999999999987 455 66668999999999999999999999999998874

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=91.51  E-value=0.63  Score=40.85  Aligned_cols=112  Identities=15%  Similarity=0.159  Sum_probs=68.9

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEecCCchhhhhheeeEE
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIK  165 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLIK  165 (450)
                      +.++||++.||.+.|++.|+||+.++.++    ..++++++..+ .++++.+.|.+.   -.|.       +.+.+++|-
T Consensus        28 m~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~~---~~v~-------~~~~~a~vs   92 (157)
T 3mah_A           28 KLLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSDI---GDVT-------VDKDMVIIC   92 (157)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTTT---EEEE-------EEEEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhcc---CeEE-------EeCCeEEEE
Confidence            35899999999999999999999998643    25788887554 677777778762   1222       345778888


Q ss_pred             EeCCC-----CCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 013068          166 LNGDT-----STWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (450)
Q Consensus       166 V~~~~-----~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~  214 (450)
                      |-...     ..-..+++...  +-.|.-++  .....+.+.=+.+..+..++.|.
T Consensus        93 vvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh  146 (157)
T 3mah_A           93 IVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALS  146 (157)
T ss_dssp             EEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHH
T ss_pred             EECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHH
Confidence            75432     22234444444  44443333  33333444445555555555554

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=90.70  E-value=0.33  Score=45.36  Aligned_cols=60  Identities=18%  Similarity=0.233  Sum_probs=45.7

Q ss_pred             cccccCCCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCC
Q 013068          302 GILYDEDPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGT  365 (450)
Q Consensus       302 ~~~~~~~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd  365 (450)
                      |+-++.+...   -+|. -+.|+||+++||-+.|++.|+||+-++.+.++ +.+...++++++.+
T Consensus        28 GIa~~~~~a~---Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~   88 (200)
T 4go7_X           28 GVAHDRSEAK---VTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD   88 (200)
T ss_dssp             EEEEECSEEE---EEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred             EEEccCCEEE---EEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence            4444444442   3443 58999999999999999999999999988776 35677888888754

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=90.59  E-value=0.78  Score=47.77  Aligned_cols=76  Identities=13%  Similarity=0.114  Sum_probs=56.3

Q ss_pred             CceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCC-CeeEEEEEEe-CChhHHHHHHHHHhcc-cCEEEEE
Q 013068          311 GLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKE-GLSCITTVVP-GTDESIGKLVQLLHKL-IDLHEVQ  386 (450)
Q Consensus       311 ~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~-~iSRiTIVV~-gd~~~ieQI~kQL~KL-idVi~V~  386 (450)
                      +-.+-.|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... +-..+-|=+. -++..+.++.+.|.+. -.-+++-
T Consensus        31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL  109 (429)
T 1phz_A           31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL  109 (429)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence            3446678888899999999999999999999999999998643 3333333333 2334488899999888 5555554

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=90.49  E-value=0.98  Score=45.31  Aligned_cols=67  Identities=13%  Similarity=0.281  Sum_probs=49.1

Q ss_pred             EEEEEEEEc--CchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeC--ChHHHHHHHHHhhcCcee
Q 013068           79 RHTISVFVG--DESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSG--TERVLRQVVEQLNKLVNV  145 (450)
Q Consensus        79 ~~tISVlVe--N~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTIVV~g--de~~ieqL~kQL~KLiDV  145 (450)
                      +.++.+++.  |+||.|.++.+.|+.||+|...|---|+... + + |=|-+.|  ++..+.+..+.|++...-
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~  279 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDW  279 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCE
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCe
Confidence            344444544  7999999999999999999999998887654 2 2 4455555  456788888888776443

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=89.93  E-value=1.2  Score=45.39  Aligned_cols=115  Identities=13%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             EEEEE-EeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCCh-hHHHHHHHHHhcccCEEEEEecCCCh
Q 013068          316 TLSML-VNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTD-ESIGKLVQLLHKLIDLHEVQDITHLP  392 (450)
Q Consensus       316 tLSil-VeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd~-~~ieQI~kQL~KLidVi~V~dlt~~~  392 (450)
                      .|++. +.|+||.+.+|...|++.|+||+-++...++ ..+...|+++++.++ +...++.+++.+-+..-.|       
T Consensus       266 ~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v-------  338 (421)
T 3ab4_A          266 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV-------  338 (421)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE-------
T ss_pred             EEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE-------
Confidence            45565 7899999999999999999999999763332 136678999998543 3344555555433332111       


Q ss_pred             hHHHhhheeEeecCcc-----chHHHHHHHHhcCcEE--EEecCCEEEEEEc
Q 013068          393 FAERELILIKIAVNTA-----ARRDVLDIAKIFRARA--VDVSDHTITLEVN  437 (450)
Q Consensus       393 ~V~REL~LIKV~~~~~-----~R~eI~~i~~iFrakI--VDvs~~si~iE~T  437 (450)
                      .+++.+++|-|-...-     --..+++.....+-+|  +.-++.++.+=+-
T Consensus       339 ~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~  390 (421)
T 3ab4_A          339 LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIR  390 (421)
T ss_dssp             EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEE
T ss_pred             EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEe
Confidence            2234566666654321     1134555444434444  4555555555443

>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1

Probab=88.58  E-value=2.9  Score=35.76  Aligned_cols=70  Identities=20%  Similarity=0.298  Sum_probs=62.3

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhcc---CceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRR---GYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRR---GyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      ..|.+.+...+.++..+.|..+|.+.   +|.+   ++-++....+..+|+.+. .+.++++.|=+.|.+...|+-|
T Consensus        35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV  108 (109)
T 1rwu_A           35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV  108 (109)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            46999999999999999999999998   8987   558888999999999998 4777899999999998888765

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=87.40  E-value=0.82  Score=42.70  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=69.8

Q ss_pred             EEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c--EEEEEEeCChHHHHHHHHHhhcCc---eeeEEEecCCchhhh
Q 013068           85 FVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTERVLRQVVEQLNKLV---NVIKVEDISNEPHVE  158 (450)
Q Consensus        85 lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~--iiTIVV~gde~~ieqL~kQL~KLi---DVi~V~dlt~~~~V~  158 (450)
                      -+.|+||++.||-+.|++.|+||+-++.+.++.. +  .++.++..+  ..++..+.|+++.   ...++.       +.
T Consensus        42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~--d~~~~~~~l~~~~~~~~~~~v~-------~~  112 (200)
T 4go7_X           42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD--VGPAAVEKLDSLRNEIGFSQLL-------YD  112 (200)
T ss_dssp             EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG--GHHHHHHHHHTTHHHHCCSEEE-------EE
T ss_pred             cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh--hHHHHHHHHHHHHhhhceeeEE-------Ee
Confidence            4889999999999999999999999988766532 2  266666543  2333333343332   233332       44


Q ss_pred             hheeeEEEeCCC-CC----HHHHHHHHHhcCcEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCCc
Q 013068          159 RELMLIKLNGDT-ST----WPEIMWLVDIFRAKV--VDISEHALTIEVTGDPGKMVAVQRNLS-KFGI  218 (450)
Q Consensus       159 RELaLIKV~~~~-~~----r~eI~~l~~~frAkI--VDvs~~sl~iEvTG~~~KIdafi~~L~-~fGI  218 (450)
                      ..++.|-|--.. ..    -..+++....-+-.|  +.-++-.+.+=+  +.+..+..++.|. .|++
T Consensus       113 ~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV--~~~d~~~Av~aLH~~F~L  178 (200)
T 4go7_X          113 DHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLC--RDTELDKAVVALHEAFGL  178 (200)
T ss_dssp             CCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHHTC
T ss_pred             cCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEE--eHHHHHHHHHHHHHHhCC
Confidence            556666553332 11    224555554444444  444444444433  5555565565555 3664

>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}

Probab=86.71  E-value=6.6  Score=32.47  Aligned_cols=72  Identities=15%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             EEEEEEEE--eccchHHHHHHHHHhccCceeeeeeeeecCCCC-e-eEEEEEEeC-ChhHHHHHHHHHhcccCEEEEE
Q 013068          314 SHTLSMLV--NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEG-L-SCITTVVPG-TDESIGKLVQLLHKLIDLHEVQ  386 (450)
Q Consensus       314 ~htLSilV--eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~-i-SRiTIVV~g-d~~~ieQI~kQL~KLidVi~V~  386 (450)
                      .|++.+.+  ++..-|.+.+...+.+-+|.+.+|...+.. ++ + -+-+++..+ +++.+++|+.+|.....|..+.
T Consensus         8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~   84 (94)
T 2lqj_A            8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVH   84 (94)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEE
T ss_pred             EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEE
Confidence            48888888  567788889999999999999999987766 55 4 444555544 6778999999999999999886

>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A

Probab=85.72  E-value=2.5  Score=34.42  Aligned_cols=70  Identities=6%  Similarity=0.140  Sum_probs=59.8

Q ss_pred             eEEEEEEEEeccch-HHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          313 RSHTLSMLVNNTPG-VLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       313 ~~htLSilVeN~pG-VL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      ..|++.+...+.++ ....|..+| +|++.+..  .-++....+..+|+.+. .+.++++.|-+.|.+...|.-|
T Consensus        14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v   85 (86)
T 2h9z_A           14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT   85 (86)
T ss_dssp             SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            57999999999999 999999999 77886542  46677889999999988 4777899999999998888765

>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13

Probab=84.44  E-value=2.9  Score=34.25  Aligned_cols=60  Identities=13%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCcEE-------EEe---cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 013068          163 LIKLNGDT--STWPEIMWLVDIFRAKV-------VDI---SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (450)
Q Consensus       163 LIKV~~~~--~~r~eI~~l~~~frAkI-------VDv---s~~sl~iEvTG~~~KIdafi~~L~~fGI-lEia  222 (450)
                      ++|+..+.  ...+-|-++++.|+..+       =.+   .-+.|++|+.|++++++++++.|+..|+ +|..
T Consensus        25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   97 (101)
T 2qrr_A           25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL   97 (101)
T ss_dssp             EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence            78887654  45567999999986543       332   3378999999999999999999999996 6765

>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14

Probab=84.30  E-value=5.1  Score=33.15  Aligned_cols=71  Identities=10%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC--cEEEEEEeCChHHHHHHHHHhhcCceee
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK--ALFTIVVSGTERVLRQVVEQLNKLVNVI  146 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~--~iiTIVV~gde~~ieqL~kQL~KLiDVi  146 (450)
                      +.+-..+.|.|+|+--+=.+|=.++++-|=.|-.=.-=|..+.  +++.++++++.+.+..|...|.+|-.|.
T Consensus         4 ~~ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~gRmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~   76 (86)
T 2nzc_A            4 EKRFYILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   76 (86)
T ss_dssp             CCEEEEEEEEEESCHHHHHHHHHHHHHTGGGEEEEEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             ceeEEEEEEEEeCchhhHHHHHHHHHhccCEEEEEcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence            3456899999999998888999999999988875433354444  4699999999999999999999998774

>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13

Probab=84.18  E-value=2.8  Score=34.83  Aligned_cols=61  Identities=15%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             eeEEEeCC--CCCHHHHHHHHHhcCcEE------EEe----cCCEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 013068          162 MLIKLNGD--TSTWPEIMWLVDIFRAKV------VDI----SEHALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (450)
Q Consensus       162 aLIKV~~~--~~~r~eI~~l~~~frAkI------VDv----s~~sl~iEvTG~~~KIdafi~~L~~fGI-lEia  222 (450)
                      .++|+...  ....+-|.++++.|+..+      ||-    .-++|++|++|+++++++.++.|+..|+ +|..
T Consensus        22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl   95 (106)
T 3dhx_A           22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL   95 (106)
T ss_dssp             EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence            56777654  345668899999998654      333    5578999999999999999999999996 4543

>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13

Probab=82.66  E-value=1.9  Score=35.58  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             eEEEeCCC--CCHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEeC-ChhHHHHHHHHhccCCc-EEEee
Q 013068          163 LIKLNGDT--STWPEIMWLVDIFRA-------KVVDI---SEHALTIEVTG-DPGKMVAVQRNLSKFGI-KELAR  223 (450)
Q Consensus       163 LIKV~~~~--~~r~eI~~l~~~frA-------kIVDv---s~~sl~iEvTG-~~~KIdafi~~L~~fGI-lEiaR  223 (450)
                      ++|+..+.  ...+-|-++++.|+.       +|-.+   .-+.|++|+.| ++++++++++.|+..|+ +|...
T Consensus        22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg   96 (98)
T 3ced_A           22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR   96 (98)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            78887653  456668899988754       44443   34789999999 89999999999999996 67763

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=80.28  E-value=7.5  Score=40.26  Aligned_cols=117  Identities=14%  Similarity=0.242  Sum_probs=74.7

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChH--HHHHHHHHhhcCceeeEEEecCCchhhhhheeeE
Q 013068           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTER--VLRQVVEQLNKLVNVIKVEDISNEPHVERELMLI  164 (450)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~--~ieqL~kQL~KLiDVi~V~dlt~~~~V~RELaLI  164 (450)
                      .++||.+.||.+.|++.|+||+.++.++    .-++++++.++.  ..+++.+.|.+....-+|.       +.+.+++|
T Consensus       309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~----~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~-------v~~~vA~V  377 (446)
T 3tvi_A          309 NSEVGFCRKILSILEMYGVSFEHMPSGV----DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE-------IHPNMALV  377 (446)
T ss_dssp             GGSTTHHHHHHHHHHTTTCCEEEBCEET----TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEE-------EEEEEEEE
T ss_pred             CccHHHHHHHHHHHHHcCCcEEEEecCC----CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEE-------EeCCeEEE
Confidence            5799999999999999999999987542    357788875442  4677777777655433333       45678888


Q ss_pred             EEeCC-----CCCHHHHHHHHHhcCcEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 013068          165 KLNGD-----TSTWPEIMWLVDIFRAKVVDIS--EHALTIEVTGDPGKMVAVQRNLS  214 (450)
Q Consensus       165 KV~~~-----~~~r~eI~~l~~~frAkIVDvs--~~sl~iEvTG~~~KIdafi~~L~  214 (450)
                      -|--.     +.--..+++.....+-.|.-++  ...+.|-+.=+.+..+..++.|.
T Consensus       378 SvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH  434 (446)
T 3tvi_A          378 ATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIY  434 (446)
T ss_dssp             EEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHH
T ss_pred             EEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHH
Confidence            87432     2334466777766677775544  33333333334444555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	8e-29
d2pc6a2	77	d.58.18.6 (A:1-77) Acetolactate synthase small sub	5e-26
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	9e-29
d2fgca2	78	d.58.18.6 (A:27-104) Acetolactate synthase small s	3e-28
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	3e-28
d2f1fa1	76	d.58.18.6 (A:2-77) Acetolactate synthase small sub	2e-25
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	3e-27
d2pc6a1	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	3e-10
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	9e-27
d2f1fa2	86	d.58.18.6 (A:78-163) Acetolactate synthase small s	4e-11
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	7e-23
d2fgca1	83	d.58.18.6 (A:105-187) Acetolactate synthase small	2e-07
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	1e-15
d1sc6a3	84	d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena	5e-09
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	4e-15
d2f06a2	70	d.58.18.11 (A:1-70) Hypothetical protein BT0572 {B	2e-12
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	2e-13
d1ygya3	78	d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena	4e-12
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	4e-06
d2f06a1	71	d.58.18.11 (A:71-141) Hypothetical protein BT0572	8e-06
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	3e-05

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  105 bits (265), Expect = 8e-29
 Identities = 34/76 (44%), Positives = 55/76 (72%), Gaps = 2/76 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           RH IS+ + +E+G ++R+AG+F+ RGYNIESL+V    D  L   T+V +G + ++ Q+ 
Sbjct: 2   RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQIT 61

Query: 137 EQLNKLVNVIKVEDIS 152
           +QLNKL+ V+K+ D+S
Sbjct: 62  KQLNKLIEVVKLIDLS 77

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 98.5 bits (246), Expect = 5e-26
 Identities = 31/75 (41%), Positives = 50/75 (66%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
           H +S+L+ N  G L+ V G+ S RGYNI+SL+V P E   LS +T V  G DE + ++ +
Sbjct: 3   HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITK 62

Query: 375 LLHKLIDLHEVQDIT 389
            L+KLI++ ++ D++
Sbjct: 63  QLNKLIEVVKLIDLS 77

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  105 bits (265), Expect = 9e-29
 Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 77  VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQ 134
           ++ H +S+ V ++ G++ ++A +FARRG+NI S+ VG +    L    I+V G ++ + Q
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 135 VVEQLNKLVNVIKVEDI 151
           + +Q  KLV V+KV  I
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score =  104 bits (261), Expect = 3e-28
 Identities = 31/77 (40%), Positives = 52/77 (67%)

Query: 312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGK 371
           +R H +SMLV+N PGV+  V  + +RRG+NI S+ VG +E  GLS +  +V G D++I +
Sbjct: 1   IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQ 60

Query: 372 LVQLLHKLIDLHEVQDI 388
           + +  +KL+++ +V  I
Sbjct: 61  IEKQAYKLVEVVKVTPI 77

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (261), Expect = 3e-28
 Identities = 34/75 (45%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 79  RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVV 136
           R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ 
Sbjct: 1   RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIE 60

Query: 137 EQLNKLVNVIKVEDI 151
           +QL+KLV+V++V ++
Sbjct: 61  KQLHKLVDVLRVSEL 75

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 97.0 bits (242), Expect = 2e-25
 Identities = 28/74 (37%), Positives = 46/74 (62%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             LS+L+ N  G L+ V G+ S+RGYNI+SL V P +   LS +T    G ++ + ++ +
Sbjct: 2   RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEK 61

Query: 375 LLHKLIDLHEVQDI 388
            LHKL+D+  V ++
Sbjct: 62  QLHKLVDVLRVSEL 75

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score =  102 bits (255), Expect = 3e-27
 Identities = 30/79 (37%), Positives = 44/79 (55%)

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
           +E +VERELML+K+        E+  L DIFR  ++D++    TIE+TG   K+    + 
Sbjct: 1   SEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQA 60

Query: 213 LSKFGIKELARTGKIALRR 231
           +    I E+ARTG   L R
Sbjct: 61  VDCNLILEIARTGVSGLSR 79

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
            + EREL+L+K+      R ++  +A IFR   +DV++   T+E+
Sbjct: 3   GYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIEL 47

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (252), Expect = 9e-27
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 155 PHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLS 214
            HVERE+ML+K+        E+    +IFR +++D++    T+++ G  GK+ A   ++ 
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIR 62

Query: 215 KFG-IKELARTGKIALRR 231
               I E+AR+G + L R
Sbjct: 63  DVAKIVEVARSGVVGLSR 80

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 392 PFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
              ERE++L+KI  +   R +V    +IFR + +DV+    T+++
Sbjct: 3   AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQL 47

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 89.7 bits (223), Expect = 7e-23
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRN 212
            E  VERE+ LIK+  D     EI  LV+IFR K++D+S     IE+TG   K+ A    
Sbjct: 3   PENRVEREMALIKVRFDEDK-QEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINL 61

Query: 213 LSKFGIKELARTGKIALRR 231
           L +  ++E+ARTG +A+ R
Sbjct: 62  LPQKQVEEIARTGIVAMNR 80

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 395 ERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEV 436
           ERE+ LIK+  +   ++++  + +IFR + +DVS     +E+
Sbjct: 8   EREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEI 48

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 11/79 (13%), Positives = 30/79 (37%)

Query: 70  PPITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE 129
           P ++        +     +  G++  +  +FA +G NI +  +  +       I +   E
Sbjct: 2   PEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADE 61

Query: 130 RVLRQVVEQLNKLVNVIKV 148
            V  + ++ +  +   I+ 
Sbjct: 62  DVAEKALQAMKAIPGTIRA 80

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L  +  N PGVL  +  + + +G NI +  +  + + G   I   +   ++   K +Q
Sbjct: 12  RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVI--DIEADEDVAEKALQ 69

Query: 375 LLHKLID 381
            +  +  
Sbjct: 70  AMKAIPG 76

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 67.8 bits (166), Expect = 4e-15
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
               +S+F+ ++SG +  +  V A+   N+ +L +  N D  +   +VS  ++  + + +
Sbjct: 2   VAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKD 61

Query: 138 Q 138
            
Sbjct: 62  N 62

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 70

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 60.1 bits (146), Expect = 2e-12
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             LS+ + N  G L  VT V+++   N+ +L +      G+     +V   D++   L  
Sbjct: 4   KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVSDPDKAYKALKD 61

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
           +   + +   D  G + +I  +    G NI++  +  + +    TI++   + V   V  
Sbjct: 2   QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61

Query: 138 QLNKLVNVIKVEDIS 152
            +   V+  K+E + 
Sbjct: 62  AIAAAVDAYKLEVVD 76

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.5 bits (144), Expect = 4e-12
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 315 HTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQ 374
             L +   + PG L  +  ++   G NIQ+  +    +   + I   +    +    +  
Sbjct: 4   INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRT 61

Query: 375 LLHKLIDLHEVQDIT 389
            +   +D ++++ + 
Sbjct: 62  AIAAAVDAYKLEVVD 76

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVD---KALFTIVVSGTERVLRQVVEQ 138
           + +   ++ G++  +  + A  G NI      L      +    I          +++E+
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILER 63

Query: 139 LNKLVNVIKVE 149
           +     +I++E
Sbjct: 64  VKTFDYIIEIE 74

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 82  ISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNK 141
           + +   +  G + ++ G  +  G  IE +    N + A   I  S  ++   +V+++   
Sbjct: 2   VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKC-IEVLKEKK- 59

Query: 142 LVNVIKVEDI 151
            V+++   D+
Sbjct: 60  -VDLLAASDL 68

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 78  KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE 137
           +   I+    D  GI N +  +  + G NI    + +   +    +++SG+   + +V  
Sbjct: 4   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVET 63

Query: 138 QLNKLVN----VIKVEDISNEPH 156
            L  L      +  ++  S   H
Sbjct: 64  TLPLLGQQHDLITMMKRTSPHDH 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.97
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.97
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.97
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	99.95
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	99.95
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	99.94
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.91
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.91
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.91
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.64
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	99.6
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	99.44
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	99.44
d2fgca1	83	Acetolactate synthase small subunit, IlvH {Thermot	99.42
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	99.12
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.09
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	99.07
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.99
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.59
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.47
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.47
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.17
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.11
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.1
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.07
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.84
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.66
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.31
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.94
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.76
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.63
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	95.89
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	95.67
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	94.93
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	94.06
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	93.9
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	93.44
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	92.0
d1rwua_	87	Hypothetical protein ybeD {Escherichia coli [TaxId	91.89
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	91.03
d2nzca1	80	Hypothetical protein TM1266 {Thermotoga maritima [	90.73
d3ceda1	95	Methionine import ATP-binding protein MetN2 {Staph	89.73
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	89.36
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	89.32
d2qrra1	97	Methionine import ATP-binding protein MetN {Vibrio	89.3
d2qswa1	90	Methionine import ATP-binding protein MetN2 {Enter	87.68
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	85.8
d3dhxa1	99	Methionine import ATP-binding protein MetN {Escher	85.35
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	83.89
d2joqa1	86	Hypothetical protein HP0495 {Helicobacter pylori [	82.78
d1gtda_	82	PurS subunit of FGAM synthetase {Archaeon Methanob	81.52

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.3e-32  Score=223.17  Aligned_cols=78  Identities=40%  Similarity=0.695  Sum_probs=76.6

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      |++|+||++|+|+||||+||+|+|+||||||+||+||+||++++||||||+.|+++.++|++|||+||+||++|.|++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999999985

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.97  E-value=1.1e-32  Score=223.09  Aligned_cols=77  Identities=40%  Similarity=0.673  Sum_probs=75.7

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      |+|||+++|+|+||||+||+|+|+||||||+||+||+||++++|||||++.|+++.++||+|||+||+||++|.|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999986

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.4e-31  Score=216.10  Aligned_cols=75  Identities=37%  Similarity=0.649  Sum_probs=74.1

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      ||||+++|+|+||||+||+|+|+||||||+||+|||||++++||||||+.|+++.++||+|||+||+||++|.|+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999997

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.95  E-value=7.9e-29  Score=200.36  Aligned_cols=75  Identities=45%  Similarity=0.810  Sum_probs=73.1

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      |+|+|+++|+|+||+|+||+|+|+||||||+||+||+++++++  |||++.|+++.++|+++||+||+||++|+|+|
T Consensus         1 Mk~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~dlt   77 (77)
T d2pc6a2           1 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS   77 (77)
T ss_dssp             EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred             CcEEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEEECc
Confidence            7899999999999999999999999999999999999999985  99999999999999999999999999999986

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.9e-28  Score=198.58  Aligned_cols=76  Identities=37%  Similarity=0.713  Sum_probs=73.7

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      |++|+||++|+|+||+|+||+|+|+||||||+||+||+|+++++  |||+++|+++.++|+++||+||+||++|++++
T Consensus         1 mk~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~dld   78 (78)
T d2fgca2           1 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPID   78 (78)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECC
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEeCC
Confidence            68999999999999999999999999999999999999999986  99999999999999999999999999999975

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.4e-27  Score=192.57  Aligned_cols=73  Identities=47%  Similarity=0.794  Sum_probs=71.3

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      ||+|+++|+|+||+|+||+|+|+||||||+||+||+|+++++  |||++.|+++.++|+++||+||+||++|+|+
T Consensus         1 khtlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~dl   75 (76)
T d2f1fa1           1 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSEL   75 (76)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEG
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEEeC
Confidence            799999999999999999999999999999999999999986  9999999999999999999999999999987

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.91  E-value=2.2e-25  Score=182.70  Aligned_cols=83  Identities=36%  Similarity=0.449  Sum_probs=79.7

Q ss_pred             chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecCc
Q 013068          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRREK  233 (450)
Q Consensus       154 ~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg~  233 (450)
                      +++|+|||+|+||++++.+|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||.+||+||+
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~gi~Ei~RSG~vai~rg~   81 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred             cchheeEEEEEEEeCChhhHHHHHHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHhcccCCEEEEecCHhhhhcCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCC
Q 013068          234 LGD  236 (450)
Q Consensus       234 ~~~  236 (450)
                      ..+
T Consensus        82 ~~l   84 (86)
T d2pc6a1          82 RVL   84 (86)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            643

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=5.4e-25  Score=179.54  Aligned_cols=80  Identities=41%  Similarity=0.571  Sum_probs=76.8

Q ss_pred             CchhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecC
Q 013068          153 NEPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFGIKELARTGKIALRRE  232 (450)
Q Consensus       153 ~~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fGIlEiaRTG~iAl~Rg  232 (450)
                      ++++|+|||||+||+++ ++|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||.+||.||
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~~~gi~EivRSG~vai~rG   81 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRW   81 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEECC
T ss_pred             chhhhhheeEEEEEecC-CCHHHHHHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhhhcCCEEEEecCceeEecC
Confidence            46789999999999986 57999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 013068          233 K  233 (450)
Q Consensus       233 ~  233 (450)
                      .
T Consensus        82 ~   82 (83)
T d2fgca1          82 N   82 (83)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.2e-25  Score=180.61  Aligned_cols=82  Identities=30%  Similarity=0.524  Sum_probs=78.9

Q ss_pred             chhhhhheeeEEEeCCCCCHHHHHHHHHhcCcEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEEeeccceeeecC
Q 013068          154 EPHVERELMLIKLNGDTSTWPEIMWLVDIFRAKVVDISEHALTIEVTGDPGKMVAVQRNLSKFG-IKELARTGKIALRRE  232 (450)
Q Consensus       154 ~~~V~RELaLIKV~~~~~~r~eI~~l~~~frAkIVDvs~~sl~iEvTG~~~KIdafi~~L~~fG-IlEiaRTG~iAl~Rg  232 (450)
                      .++|+||||||||++++.+|.+|+++++.|+|+|||++++++++|+||+++|||+|++.|+||| |+|++|||.+||.||
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l~~~g~I~EivRSG~iai~rg   81 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRG   81 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEEST
T ss_pred             cChheeEEEEEEEECChhhHHHHHHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHhhccCCEEEEEcCCHhhhhcc
Confidence            4689999999999999999999999999999999999999999999999999999999999998 999999999999999


Q ss_pred             cCC
Q 013068          233 KLG  235 (450)
Q Consensus       233 ~~~  235 (450)
                      +..
T Consensus        82 ~~~   84 (86)
T d2f1fa2          82 DKI   84 (86)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            753

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.64  E-value=1.8e-16  Score=125.02  Aligned_cols=63  Identities=19%  Similarity=0.428  Sum_probs=58.5

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHh
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQL  139 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL  139 (450)
                      |+.++|||+++|+||+|+||+++|++|||||+||++++|+++++++++|+.+++..++|.+|-
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~~e~a~~~L~~~g   63 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNH   63 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHTT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECChHHHHHHHHHCC
Confidence            788999999999999999999999999999999999999999999999998888887776653

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.60  E-value=7.5e-16  Score=121.42  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=53.6

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHH
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQL  375 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQ  375 (450)
                      |+.++||++++|+||+|+||+++|++|||||+||++++|++++++||  +++..++..++|.+|
T Consensus         1 m~~~QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Ri--iv~~~e~a~~~L~~~   62 (70)
T d2f06a2           1 MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG--IVSDPDKAYKALKDN   62 (70)
T ss_dssp             SEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE--EESCHHHHHHHHHHT
T ss_pred             CceEEEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEE--EECChHHHHHHHHHC
Confidence            67899999999999999999999999999999999999999999997  555455555555444

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.44  E-value=1.8e-14  Score=117.23  Aligned_cols=59  Identities=27%  Similarity=0.475  Sum_probs=54.7

Q ss_pred             ChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSL  449 (450)
Q Consensus       391 ~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L  449 (450)
                      +++|+|||+||||++++.+|.+|+++++.|+|+|+|++++++++|+||+++|+ +|++.|
T Consensus         2 e~~veREl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l   61 (86)
T d2pc6a1           2 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAV   61 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHS
T ss_pred             cchheeEEEEEEEeCChhhHHHHHHHHHHcCcEEEEcCCCeEEEEEeCCHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999988 555555

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.7e-14  Score=117.47  Aligned_cols=59  Identities=27%  Similarity=0.417  Sum_probs=54.6

Q ss_pred             ChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhc
Q 013068          391 LPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSL  449 (450)
Q Consensus       391 ~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L  449 (450)
                      .++|+||||||||++++.+|.+|+++++.|+|+|+|++++++++|+||+++|+ +|++.|
T Consensus         2 g~~verEl~LvKv~~~~~~~~~i~~i~~~f~a~ivd~~~~~~iie~tG~~~~id~fi~~l   61 (86)
T d2f1fa2           2 GAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASI   61 (86)
T ss_dssp             SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHH
T ss_pred             cChheeEEEEEEEECChhhHHHHHHHHHhcCeEEEEccCCEEEEEEeCCHHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999999999988 555554

>d2fgca1 d.58.18.6 (A:105-187) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=99.42  E-value=3.6e-14  Score=114.93  Aligned_cols=60  Identities=25%  Similarity=0.471  Sum_probs=53.9

Q ss_pred             CChhHHHhhheeEeecCccchHHHHHHHHhcCcEEEEecCCEEEEEEcCCchhh-hhhhhcC
Q 013068          390 HLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLEVNPINNIC-FFFDSLS  450 (450)
Q Consensus       390 ~~~~V~REL~LIKV~~~~~~R~eI~~i~~iFrakIVDvs~~si~iE~TG~~ek~-~~~~~L~  450 (450)
                      ++++|+|||||+||+++ .+|.+|+++++.|+|+|||++++++++|+||+++|+ +|++.|+
T Consensus         3 p~~~verEl~LvKv~~~-~~~~~i~~~~~~f~a~ivd~~~~~~iie~tg~~~~id~fi~~l~   63 (83)
T d2fgca1           3 PENRVEREMALIKVRFD-EDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLP   63 (83)
T ss_dssp             GGGEEEEEEEEEEEECS-SCHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSC
T ss_pred             chhhhhheeEEEEEecC-CCHHHHHHHHHHcCCEEEEcCCCeEEEEEeCCHHHHHHHHHHhh
Confidence            46789999999999986 579999999999999999999999999999999988 6666653

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=6.1e-11  Score=94.01  Aligned_cols=74  Identities=14%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEecC
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDIT  389 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dlt  389 (450)
                      -|.|.+..+|+||+|++|+++|+++|+||.++.+++.+..+...|.|.+++  ..-+++.++|+++.+|++|..++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~--~~~~~vl~~I~~~~~V~~v~~i~   76 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVVD   76 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCC--CccHHHHHHHHcCCCeEEEEEEe
Confidence            388999999999999999999999999999999999999999999999865  35689999999999999998653

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2.4e-10  Score=91.33  Aligned_cols=73  Identities=14%  Similarity=0.302  Sum_probs=66.5

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCceeeEEEec
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDI  151 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLiDVi~V~dl  151 (450)
                      .|.|.+.-+|+||+|.+|+++|+++|+||.++..+...+.+...++++.|+...++++++|+++..|++|..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            4889999999999999999999999999999999988877876677778888999999999999999999754

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=3.1e-10  Score=90.69  Aligned_cols=73  Identities=16%  Similarity=0.307  Sum_probs=64.4

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEec
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDI  388 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~dl  388 (450)
                      .|.|.+.-+|+||||++|+++|+++|+||.++.++...+.+.  ..+++..|++..+++.++|+++.+|++|..+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~--a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l   83 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGY--VVIDIEADEDVAEKALQAMKAIPGTIRARLL   83 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEE--EEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcE--EEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence            489999999999999999999999999999999998765554  4556677888999999999999999999754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=3.1e-10  Score=89.84  Aligned_cols=72  Identities=15%  Similarity=0.264  Sum_probs=62.3

Q ss_pred             EEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcE--EEEEEeCChHHHHHHHHHhhcCceeeEEEecC
Q 013068           79 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDIS  152 (450)
Q Consensus        79 ~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~i--iTIVV~gde~~ieqL~kQL~KLiDVi~V~dlt  152 (450)
                      -|.|.+..+|+||+|.+|+++|+++|+||.++.++.....+.  +.+.+  |+...+++.++|+++.+|++|..++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~~~~~~vl~~I~~~~~V~~v~~i~   76 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQDVPDDVRTAIAAAVDAYKLEVVD   76 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SSCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CCCccHHHHHHHHcCCCeEEEEEEe
Confidence            378999999999999999999999999999999999887774  55555  4557789999999999999998653

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.59  E-value=5.6e-08  Score=76.49  Aligned_cols=72  Identities=18%  Similarity=0.169  Sum_probs=58.4

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecC-CCCeeEEEEEEeCChhHHHHHHHHHhcccCEEEEEe
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE-KEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQD  387 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te-~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi~V~d  387 (450)
                      .|.+.++|+||+|+.|+++|+..|.||.+++..... ...-..|+|-+...+..++.|+.+|+++-+|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            588999999999999999999999999999977543 356668888887655469999999999999999974

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.47  E-value=1.4e-07  Score=74.20  Aligned_cols=70  Identities=14%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c--EEEEEEeCChHHHHHHHHHhhcCceeeEEEe
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A--LFTIVVSGTERVLRQVVEQLNKLVNVIKVED  150 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~--iiTIVV~gde~~ieqL~kQL~KLiDVi~V~d  150 (450)
                      -|.+.++|+||+|+.|+++|+..|.||.+++.....+. .  .+++-+...+..++.|+.+|+++-+|.+|+.
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver   75 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE   75 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence            58899999999999999999999999999997654332 2  4788776555459999999999999999973

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.47  E-value=1.5e-07  Score=73.06  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=50.3

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHH
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVE  137 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~k  137 (450)
                      .|+|.++|+||.|.+++++|+..|+||+++.+..+.+.+.+.+.++..++..+-|.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~~L~~   57 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE   57 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHHHHHH
Confidence            489999999999999999999999999999999998888889989866666665554

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.17  E-value=2.9e-06  Score=67.15  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=57.2

Q ss_pred             ceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCChHHHHHHHHHhhcCc
Q 013068           77 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTERVLRQVVEQLNKLV  143 (450)
Q Consensus        77 ~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde~~ieqL~kQL~KLi  143 (450)
                      -+.++|+++-.|+||++++|+++++++|.||..+......+.-.+.+.+.+++..++++.+.|++|-
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLG   69 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCcccHHHHHHHHHHHH
Confidence            4678999999999999999999999999999998887766554567778888888999999887763

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.11  E-value=3.6e-06  Score=66.54  Aligned_cols=65  Identities=17%  Similarity=0.253  Sum_probs=55.9

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLi  380 (450)
                      .++|++...|+||++++|+++++++|.||..+.....  .+...+.+.+.+++..++++.+.|++|-
T Consensus         5 ~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~L~~l~   69 (86)
T d1u8sa1           5 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLG   69 (86)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEE--CCeeEEEEEEEcCcccHHHHHHHHHHHH
Confidence            5689999999999999999999999999988776554  5666788888888888999999998873

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.10  E-value=3.9e-06  Score=65.63  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=53.0

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeC-ChhHHHHHHHHHhcccC
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPG-TDESIGKLVQLLHKLID  381 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~g-d~~~ieQI~kQL~KLid  381 (450)
                      ||++|++...|+||+++.||++++.+|.||..++....  .+.-.|.+.+.. +...++++.++|+++-+
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~--~~~f~~~~~v~~~~~~~~~~l~~~l~~la~   68 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL--DEYFTMMAVVSSDEKQDFTYLRNEFEAFGQ   68 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEe--CCEEEEEEEEEEecCCCHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999987654  355556666653 23357888888877643

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.07  E-value=2.7e-06  Score=66.59  Aligned_cols=69  Identities=20%  Similarity=0.311  Sum_probs=52.9

Q ss_pred             eEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC-hHHHHHHHHHhhcCceee
Q 013068           78 KRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT-ERVLRQVVEQLNKLVNVI  146 (450)
Q Consensus        78 ~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd-e~~ieqL~kQL~KLiDVi  146 (450)
                      |++.|++.-.|+||+++.||++++++|.||..++.....+.-.+.+.+..+ +..++++.++|+++-+-.
T Consensus         1 Mk~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~la~~l   70 (83)
T d1zpva1           1 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTL   70 (83)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            779999999999999999999999999999999876543322355555533 334788888887765433

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.84  E-value=2.5e-05  Score=60.14  Aligned_cols=54  Identities=17%  Similarity=0.196  Sum_probs=43.0

Q ss_pred             EEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHH
Q 013068          316 TLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKL  372 (450)
Q Consensus       316 tLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI  372 (450)
                      .|+|.++|+||-|++++++|+..|+||+++.+..+.+.  .-+.+.++ |.+...++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~--~~~vl~vd-d~~~a~~~   54 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNV--ANVVIRPS-NMDKCIEV   54 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTE--EEEEEEES-CHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCc--EEEEEEEC-CHHHHHHH
Confidence            48999999999999999999999999999999988654  44556665 44433333

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.66  E-value=5.8e-05  Score=60.16  Aligned_cols=67  Identities=13%  Similarity=0.142  Sum_probs=46.6

Q ss_pred             EEEE--EEEeccchHHHHHHHHHhccCceeeeeeeeecC------CCCeeEEEEEEeC-ChhHHHHHHHHHhcccC
Q 013068          315 HTLS--MLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAE------KEGLSCITTVVPG-TDESIGKLVQLLHKLID  381 (450)
Q Consensus       315 htLS--ilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te------~~~iSRiTIVV~g-d~~~ieQI~kQL~KLid  381 (450)
                      |++.  |...||||++++|+++|+.||.||..|....-.      ....-.|.+++.. ..-.++++.+.|+.|-+
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~   80 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCT   80 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHH
Confidence            5555  557999999999999999999999999864321      2334455555442 23457788888777644

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.31  E-value=0.00013  Score=58.15  Aligned_cols=68  Identities=21%  Similarity=0.285  Sum_probs=47.6

Q ss_pred             EEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecC----C--CcE--EEEEEeC-ChHHHHHHHHHhhcCceeeEE
Q 013068           81 TISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV----D--KAL--FTIVVSG-TERVLRQVVEQLNKLVNVIKV  148 (450)
Q Consensus        81 tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~te----d--~~i--iTIVV~g-de~~ieqL~kQL~KLiDVi~V  148 (450)
                      .+.|.-.||||++.+|+++|+.||.||+.|....-.    +  .+.  |+++++. ....+.+|.+.|+.|-+-..|
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l~~~l~v   84 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCTALDV   84 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHHHHHcee
Confidence            455669999999999999999999999999864311    1  123  5555553 344577888877776554433

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.94  E-value=0.0019  Score=50.42  Aligned_cols=66  Identities=18%  Similarity=0.240  Sum_probs=53.1

Q ss_pred             EEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC-hhHHHHHHHHHhcccCEEEE
Q 013068          320 LVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       320 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-~~~ieQI~kQL~KLidVi~V  385 (450)
                      -++|+||.|.++.++|+.+|+|+.+|.--|... ++-..+-|-++|. ++.+.++.++|++.-.-+++
T Consensus         8 ~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           8 PMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             ESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             eCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            347999999999999999999999999988764 5667777778773 44688999999887554444

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.76  E-value=0.0035  Score=48.87  Aligned_cols=65  Identities=14%  Similarity=0.224  Sum_probs=48.9

Q ss_pred             EEEcCchhHHHHHHHHHhccCceeeeEeeeecCCC-c-E-EEEEEeCC-hHHHHHHHHHhhcCceeeEE
Q 013068           84 VFVGDESGIINRIAGVFARRGYNIESLAVGLNVDK-A-L-FTIVVSGT-ERVLRQVVEQLNKLVNVIKV  148 (450)
Q Consensus        84 VlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~-~-i-iTIVV~gd-e~~ieqL~kQL~KLiDVi~V  148 (450)
                      +-.+|+||.|.++.++|+.+|+|+.+|---|.... + + +-|-++|. ++.++++.++|++...-+++
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~~~~~~kv   75 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM   75 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHHhcCcEEE
Confidence            33579999999999999999999999998876644 2 3 55555552 34688888888877554443

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.0034  Score=50.78  Aligned_cols=73  Identities=14%  Similarity=0.192  Sum_probs=56.1

Q ss_pred             CCCCceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCC-CCeeEEEEEEeCC-hhHHHHHHHHHhccc
Q 013068          308 DPSGLRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEK-EGLSCITTVVPGT-DESIGKLVQLLHKLI  380 (450)
Q Consensus       308 ~~~~~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~-~~iSRiTIVV~gd-~~~ieQI~kQL~KLi  380 (450)
                      .+++-.+-.|.+.+.|+||.|..+...|+++|+|+..|.--|... +.-..+-|-++|. ++.+.++++.|.+-+
T Consensus        10 ~~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~~   84 (97)
T d1phza1          10 NSNQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDI   84 (97)
T ss_dssp             CCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHhh
Confidence            345555678888899999999999999999999999999988764 4455566656664 445777777776543

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.011  Score=47.68  Aligned_cols=67  Identities=12%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             cceEEEEEEEEcCchhHHHHHHHHHhccCceeeeEeeeecCCCc-E--EEEEEeCC-hHHHHHHHHHhhcC
Q 013068           76 KVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKA-L--FTIVVSGT-ERVLRQVVEQLNKL  142 (450)
Q Consensus        76 ~~~~~tISVlVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~-i--iTIVV~gd-e~~ieqL~kQL~KL  142 (450)
                      +..+-.|.+.+.|+||.|.++...|+++|+|+..|.--|..... -  |-|-+.|. +..++.+++.|++-
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~~i~~~l~~L~~~   83 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRND   83 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChHHHHHHHHHHHHh
Confidence            44456788889999999999999999999999999888866443 2  44444543 44577777777554

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=95.67  E-value=0.0063  Score=45.82  Aligned_cols=51  Identities=25%  Similarity=0.383  Sum_probs=42.8

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      .++||++.|+.+.++..|+||+-++.|.+|    .+|+++|+.+  ..++.++.|++
T Consensus        12 ~~~~gi~arif~~L~~~~InV~mIsq~~Se----~~Is~~V~~~--d~~~Av~~Lh~   62 (67)
T d2hmfa2          12 RGAKGIAGKIFTAVSESGANIKMIAQGSSE----VNISFVIDEK--DLLNCVRKLHE   62 (67)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCCCEEEESSCS----SEEEEEEEGG--GHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHcCCChHHeeecCcc----ceEEEEEeHH--HHHHHHHHHHH
Confidence            689999999999999999999999998776    5699999855  36666666654

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=94.93  E-value=0.015  Score=46.74  Aligned_cols=59  Identities=17%  Similarity=0.285  Sum_probs=46.0

Q ss_pred             EEEEEE---eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhccc
Q 013068          316 TLSMLV---NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLI  380 (450)
Q Consensus       316 tLSilV---eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLi  380 (450)
                      .+++.-   .++||+++||.+.+++.|+||+-++.+.+|.    .|+++|+.++  .++.++.|++..
T Consensus        17 ~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~----~Isf~V~~~d--~~~a~~~L~~~f   78 (100)
T d2hmfa3          17 LINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET----NISLVVSEED--VDKALKALKREF   78 (100)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC----CEEEEECSTT--HHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc----eEEEEEeHHH--HHHHHHHHHHHH
Confidence            455543   7999999999999999999999999887763    5899998664  566666665543

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.06  E-value=0.016  Score=44.54  Aligned_cols=51  Identities=25%  Similarity=0.353  Sum_probs=41.5

Q ss_pred             EeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHh
Q 013068          321 VNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLH  377 (450)
Q Consensus       321 VeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~  377 (450)
                      ..++||+++|+.+.++..|+||+-++-|.+|    ..|+++|+.+  ..++.++.|+
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se----~~Is~vV~~~--d~~~Av~~Lh   60 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK----VNISFIVNEA--EAEGCVQALH   60 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC----SEEEEEEEHH--HHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc----eEEEEEEeHH--HHHHHHHHHH
Confidence            3689999999999999999999999998766    4599999744  4556666553

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.90  E-value=0.052  Score=42.81  Aligned_cols=52  Identities=17%  Similarity=0.272  Sum_probs=39.4

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChh--------HHHHHHHHHhcc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDE--------SIGKLVQLLHKL  379 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~--------~ieQI~kQL~KL  379 (450)
                      .++||+++||.+.|++.|+||+-++.++      ..|+++++.++.        .++++.+.|+++
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~Se------~~is~~v~~~~~~~a~~~~~~~~~~~~el~~i   83 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATSE------VSISLTLDPSKLWSRELIQQELDHVVEELEKI   83 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEET------TEEEEEECCGGGSSSCCCHHHHHHHHHHHTTT
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEecC------CeEEEEEchhHHHHHHHHHHHHHHHHHHHhCC
Confidence            4899999999999999999999998543      268999985432        245555555543

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=93.44  E-value=0.074  Score=39.68  Aligned_cols=42  Identities=21%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde  129 (450)
                      ..++||++.|+.+.++..|+||+-++.+.++  -.++++|+.++
T Consensus        11 m~~~~gi~arif~~L~~~~InV~mIsq~~Se--~~Is~~V~~~d   52 (67)
T d2hmfa2          11 MRGAKGIAGKIFTAVSESGANIKMIAQGSSE--VNISFVIDEKD   52 (67)
T ss_dssp             TTTCTTHHHHHHHHHHHTTCCCCEEEESSCS--SEEEEEEEGGG
T ss_pred             CCCCccHHHHHHHHHHHcCCChHHeeecCcc--ceEEEEEeHHH
Confidence            4699999999999999999999999987654  34888887543

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.00  E-value=0.27  Score=38.49  Aligned_cols=38  Identities=11%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             cCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 013068           87 GDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (450)
Q Consensus        87 eN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd  128 (450)
                      .++||+++||.+.|++.|+||+-++.++    .-++++++.+
T Consensus        24 ~~~~G~~a~if~~La~~~Inv~~Is~Se----~~is~~v~~~   61 (91)
T d2cdqa2          24 LGQVGFLAKVFSIFEELGISVDVVATSE----VSISLTLDPS   61 (91)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEET----TEEEEEECCG
T ss_pred             CCCccHHHHHHHHHHHcCCcEEEEEecC----CeEEEEEchh
Confidence            5899999999999999999999998532    2477777644

>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: YbeD-like
domain: Hypothetical protein ybeD
species: Escherichia coli [TaxId: 562]

Probab=91.89  E-value=0.54  Score=36.20  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             eEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          313 RSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       313 ~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      ..|.+.+...|.++..+.|..++.+..-+-.+++.-++....+-.+|+.+. .+++++..|=+.|.+...|.-|
T Consensus        13 c~y~~KvIg~~~~~~~~~v~~i~~~~~~~~~~~~~k~Ss~GkY~Svtv~i~~~s~eqv~~iY~~l~~~~~Vkmv   86 (87)
T d1rwua_          13 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV   86 (87)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred             CCcEEEEEEECChhHHHHHHHHHHHhCCCCCcceeecCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            358999999999999999999999877677888889999999999999988 5778899999999999888765

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.03  E-value=0.12  Score=39.41  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeC
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSG  127 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~g  127 (450)
                      ..++||++.|+.+.+++.|+||+-++-|.++  --++++|+.
T Consensus        10 ~~~~~Giaarif~aL~~~~InV~mIsqg~se--~~Is~vV~~   49 (75)
T d2cdqa3          10 VQHSSLILERAFHVLYTKGVNVQMISQGASK--VNISFIVNE   49 (75)
T ss_dssp             GGGHHHHHHHHHHHHHHHTCCCSEEEECTTC--SEEEEEEEH
T ss_pred             CCCChhHHHHHHHHHHHcCCceEEEEcCccc--eEEEEEEeH
Confidence            5689999999999999999999999987654  248888864

>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: TM1266-like
domain: Hypothetical protein TM1266
species: Thermotoga maritima [TaxId: 2336]

Probab=90.73  E-value=0.52  Score=36.69  Aligned_cols=69  Identities=20%  Similarity=0.319  Sum_probs=61.4

Q ss_pred             EEEEEEEEeccchHHHHHHHHHhccCceeeeeeee-ecCCCCeeEEEEEEeCChhHHHHHHHHHhcccCEE
Q 013068          314 SHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVG-PAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLH  383 (450)
Q Consensus       314 ~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg-~te~~~iSRiTIVV~gd~~~ieQI~kQL~KLidVi  383 (450)
                      -+.++|.|+|+--.-.+|=.++++.|-.|.. -+| |....+++=|.++++|+.+.+..+...|.+|..|.
T Consensus         4 i~vigIive~r~~~a~kVn~iL~~yg~~I~g-RmGip~~~~~v~iIsl~v~g~~d~I~~L~gkLg~i~gV~   73 (80)
T d2nzca1           4 FYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR   73 (80)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred             EEEEEEEEeChHHhHHHHHHHHHHCCCEEEE-eccCCccccCceEEEEEEECCHHHHHHHHHhhcCCCCEE
Confidence            3689999999998989999999999999887 555 66678999999999999999999999999998774

>d3ceda1 d.58.18.13 (A:247-341) Methionine import ATP-binding protein MetN2 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.73  E-value=0.36  Score=37.88  Aligned_cols=64  Identities=17%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             eeEEEeCC--CCCHHHHHHHHHhcC-------cEEEEecC---CEEEEEEeC-ChhHHHHHHHHhccCCc-EEEeecc
Q 013068          162 MLIKLNGD--TSTWPEIMWLVDIFR-------AKVVDISE---HALTIEVTG-DPGKMVAVQRNLSKFGI-KELARTG  225 (450)
Q Consensus       162 aLIKV~~~--~~~r~eI~~l~~~fr-------AkIVDvs~---~sl~iEvTG-~~~KIdafi~~L~~fGI-lEiaRTG  225 (450)
                      .++|+...  ..+.+-|.++++.|+       |+|=.+..   +.+++++.| +++++++.++.|+..|+ +|+.+-|
T Consensus        18 ~lvrL~F~G~~a~~Pvis~l~r~~~v~vnIL~g~I~~i~~~~~G~Liv~l~G~~~~~i~~ai~~L~~~~v~vEVi~~g   95 (95)
T d3ceda1          18 YIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG   95 (95)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             eEEEEEEeCCccCchHHHHHHHHhCCceEEEEEEeEEeCCeeEEEEEEEEecCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            36777654  467778999998886       44555555   779999999 78899999999999996 7888766

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=89.36  E-value=0.14  Score=40.84  Aligned_cols=47  Identities=21%  Similarity=0.236  Sum_probs=37.3

Q ss_pred             EEEE---EEcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCCh
Q 013068           81 TISV---FVGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGTE  129 (450)
Q Consensus        81 tISV---lVeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gde  129 (450)
                      .|++   -..++||++.||.+.|++.|+||+-++.+.++.  -++++|+.++
T Consensus        17 ~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~--~Isf~V~~~d   66 (100)
T d2hmfa3          17 LINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEED   66 (100)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEECSTT
T ss_pred             EEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc--eEEEEEeHHH
Confidence            4555   347999999999999999999999999776543  3788887543

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.07  Score=41.99  Aligned_cols=55  Identities=16%  Similarity=0.283  Sum_probs=40.7

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhH-------HHHHHHHHhcccCE
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDES-------IGKLVQLLHKLIDL  382 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~-------ieQI~kQL~KLidV  382 (450)
                      .++||+++||.+.|++.|+||+-++.++      .+|+++++.++..       .+.+.+.|+|+-+|
T Consensus        25 ~~~~G~~~~if~~L~~~~Inv~mis~Se------~~is~~v~~~~~~~av~~L~~~~~~~eL~~~~~V   86 (91)
T d2j0wa2          25 LHSRGFLAEVFGILARHNISVDLITTSE------VSVALTLDTTGSTSTGDTLLTQSLLMELSALCRV   86 (91)
T ss_dssp             SCHHHHHHHHTTTTTTTTCCCSEEEEET------TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCE
T ss_pred             CCCcCHHHHHHHHHHHcCCcEEEEEccC------cEEEEEEchhHHHHHHHHHHHHHHHHHHhccCcE
Confidence            5689999999999999999999998432      5789999854321       24555666665444

>d2qrra1 d.58.18.13 (A:2-98) Methionine import ATP-binding protein MetN {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=89.30  E-value=0.64  Score=36.41  Aligned_cols=60  Identities=13%  Similarity=0.139  Sum_probs=47.9

Q ss_pred             eeEEEeCCC--CCHHHHHHHHHhcCcEE------E-EecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 013068          162 MLIKLNGDT--STWPEIMWLVDIFRAKV------V-DISE---HALTIEVTGDPGKMVAVQRNLSKFGI-KEL  221 (450)
Q Consensus       162 aLIKV~~~~--~~r~eI~~l~~~frAkI------V-Dvs~---~sl~iEvTG~~~KIdafi~~L~~fGI-lEi  221 (450)
                      .++|+....  .+.+-|.++++.|+..+      | ++..   ++++++++|+++++++.++.|+..|+ +|+
T Consensus        20 ~llrl~f~g~~a~~Pvis~l~~~~~i~vnIL~g~i~~i~~~~~G~Lil~l~G~~~~~~~Al~~L~~~~i~vEv   92 (97)
T d2qrra1          20 PLVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEV   92 (97)
T ss_dssp             EEEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEEeCCCcCchHHHHHHHHHCCCeEEEEEeeEEeCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCeEEE
Confidence            588887653  56677999999998665      2 3332   67999999999999999999999996 454

>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding protein MetN2 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN2
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.68  E-value=0.89  Score=35.11  Aligned_cols=60  Identities=18%  Similarity=0.381  Sum_probs=47.6

Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCcE-------EEEecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEEe
Q 013068          163 LIKLNG--DTSTWPEIMWLVDIFRAK-------VVDISE---HALTIEVTGDPGKMVAVQRNLSKFGI-KELA  222 (450)
Q Consensus       163 LIKV~~--~~~~r~eI~~l~~~frAk-------IVDvs~---~sl~iEvTG~~~KIdafi~~L~~fGI-lEia  222 (450)
                      ++|+..  ...+.+-|-++++.|+-.       |=++..   +.+++|++|+++++++.++.|+..|+ +|+.
T Consensus        15 lvrl~f~g~~a~~Pvis~l~r~~~i~vnIL~g~i~~i~~~~~G~L~l~l~G~~~~i~~al~~L~~~~v~vEvi   87 (90)
T d2qswa1          15 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI   87 (90)
T ss_dssp             EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEEEcCCccCccHHHHHHHHhCCcEEEEEEEeEEeCCccEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEe
Confidence            566654  456777899999988754       444554   79999999999999999999999997 5653

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=85.80  E-value=0.29  Score=35.89  Aligned_cols=49  Identities=31%  Similarity=0.505  Sum_probs=37.8

Q ss_pred             eccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCChhHHHHHHHHHhc
Q 013068          322 NNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHK  378 (450)
Q Consensus       322 eN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~~~ieQI~kQL~K  378 (450)
                      .++||+.+|+...++.  +||.=++.+.+|.    +|+++|+.+  ..++.++.|++
T Consensus        12 ~~~~gi~arif~~L~~--~nI~~i~~~~Se~----~is~vV~~~--d~~~Av~aLh~   60 (64)
T d2j0wa3          12 SKACGVGKEVFGVLEP--FNIRMICYGASSH----NLCFLVPGE--DAEQVVQKLHS   60 (64)
T ss_dssp             TTSSSHHHHHHSSCTT--SCCCEEEESSCTT----EEEEEEEGG--GHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHhh--CCCeEEEEEcCcc----EEEEEEcHH--HHHHHHHHHHH
Confidence            4899999999999974  7777777776654    799999855  46777777664

>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: NIL domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=85.35  E-value=0.94  Score=35.47  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=48.1

Q ss_pred             eeEEEeCC--CCCHHHHHHHHHhcCcEE-------EEecC---CEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 013068          162 MLIKLNGD--TSTWPEIMWLVDIFRAKV-------VDISE---HALTIEVTGDPGKMVAVQRNLSKFGI-KEL  221 (450)
Q Consensus       162 aLIKV~~~--~~~r~eI~~l~~~frAkI-------VDvs~---~sl~iEvTG~~~KIdafi~~L~~fGI-lEi  221 (450)
                      .++|+...  ....+-|.++++.|+..+       =.+..   +.+++++.|+++++++.++.|+..|+ +|+
T Consensus        21 ~llrl~f~g~~a~~Piis~l~~~~~v~vnIL~g~i~~i~~~~~G~Lil~l~g~~~~i~~al~~L~~~~v~vEv   93 (99)
T d3dhxa1          21 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV   93 (99)
T ss_dssp             EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred             eEEEEEEeCCCcCccHHHHHHHHhCCceEEEEEeeEEeCCeeEEEEEEEeeCCHHHHHHHHHHHHHcCCeEEE
Confidence            47888664  467778999999998654       33454   78999999999999999999999996 454

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=0.2  Score=39.24  Aligned_cols=39  Identities=13%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             EcCchhHHHHHHHHHhccCceeeeEeeeecCCCcEEEEEEeCC
Q 013068           86 VGDESGIINRIAGVFARRGYNIESLAVGLNVDKALFTIVVSGT  128 (450)
Q Consensus        86 VeN~pGVL~RIagLFsRRGyNIeSLsvg~ted~~iiTIVV~gd  128 (450)
                      ..++||+++||.+.|++.|+||+-++.+    ..-++++|+..
T Consensus        24 m~~~~G~~~~if~~L~~~~Inv~mis~S----e~~is~~v~~~   62 (91)
T d2j0wa2          24 MLHSRGFLAEVFGILARHNISVDLITTS----EVSVALTLDTT   62 (91)
T ss_dssp             CSCHHHHHHHHTTTTTTTTCCCSEEEEE----TTEEEEEECCC
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEEcc----CcEEEEEEchh
Confidence            4678999999999999999999999842    23577888643

>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: YbeD/HP0495-like
family: HP0495-like
domain: Hypothetical protein HP0495
species: Helicobacter pylori [TaxId: 210]

Probab=82.78  E-value=5.5  Score=30.07  Aligned_cols=72  Identities=4%  Similarity=0.031  Sum_probs=62.6

Q ss_pred             ceEEEEEEEEeccchHHHHHHHHHhccCceeeeeeeeecCCCCeeEEEEEEe-CChhHHHHHHHHHhcccCEEEE
Q 013068          312 LRSHTLSMLVNNTPGVLNIVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVP-GTDESIGKLVQLLHKLIDLHEV  385 (450)
Q Consensus       312 ~~~htLSilVeN~pGVL~RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~-gd~~~ieQI~kQL~KLidVi~V  385 (450)
                      ...|.+.+...+.++.+..+..+|..|.+.+..  .-++....+-.+|+.+. .++++++.|=+.|.+.-.|+.|
T Consensus        13 Pc~y~~KvIg~~~~~~~~~~~~~~~~~~~~~~~--~k~Ss~GkY~Svtv~v~v~s~~ql~~iY~~L~~~~~Vimv   85 (86)
T d2joqa1          13 PCLWDYRVIMTTKDTSTLKELLETYQRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT   85 (86)
T ss_dssp             SEEEEEEEEESCSCCCHHHHHHHTTTCCEEEEE--EEECTTSCCEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred             CcccEEEEEEecCcccceeeEEEEeccCCCCCc--cccCCCCcEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence            357999999999999999999999999988764  25677889999999887 5778999999999999999876

>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: PurS-like
superfamily: PurS-like
family: PurS subunit of FGAM synthetase
domain: PurS subunit of FGAM synthetase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.52  E-value=1.4  Score=34.01  Aligned_cols=46  Identities=15%  Similarity=0.290  Sum_probs=37.3

Q ss_pred             EEEEEEEEeccchHHH----HHHHHHhccCceeeeeeeeecCCCCeeEEEEEEeCCh
Q 013068          314 SHTLSMLVNNTPGVLN----IVTGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTD  366 (450)
Q Consensus       314 ~htLSilVeN~pGVL~----RItgLFsRRGyNIeSLtVg~te~~~iSRiTIVV~gd~  366 (450)
                      +|.+.|.|..+||||.    -|.+-+.+.||+++++.+|-       ++.+.+++++
T Consensus         1 kf~v~V~V~lK~gVlDPqG~ai~~aL~~lG~~v~~Vr~gK-------~~~l~i~~~~   50 (82)
T d1gtda_           1 KFMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-------VITFTMDEDS   50 (82)
T ss_dssp             CEEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-------EEEEEECCSC
T ss_pred             CeEEEEEEEECCCCcCcHHHHHHHHHHHcCCCcceEEEEE-------EEEEEEcCCC
Confidence            4788999999999985    56677788999999999985       4777777643