Citrus Sinensis ID: 013079

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGVFKN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHcccccccEEEEEccccHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHcccEEEEcccccccccccccccccEEEEccccccccccccEEEEEEccHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHHHHHcHHcccccccccccccccccccccccccHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccEEccEEEEEEEEcccHHHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccccEEEEEEccccHHHHHHHHHccccEEEEEEccccccccHccHHHHHHHHHHcccEEEEEcccccccccHHHHcccEEEEEcccccccccccccEEEEEcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccHHHHHHHHccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccHHHHHHcccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maecfvlsskkrsagteetdgddlyktKKSMLSTAAAWEDPAAALASARHefgehggvnmsieasatftvmepeTMRRMFagelgpdrdffiysrhfnptVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFfpracnitttfvdisdhEMVNSAIVQGRTKVLYFEsisnptlavanipelsrlahdkGVTVVVDntfsplvlsparlgaDVVVHSISKFIsggadiiagavcgpanlvNSMMDLHQGALmllgptmnpkvAFELSeriphlglRMKEHCHRALIFARRMKKLGLKvlypgledhphheLLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLmscsgsstsseLNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGVFKN
Flexible Loop (DISEMBL)
maecfvlsskkrsagteetdgddlykTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALsrmqdsgvfkn
Low Complexity Region (SEG)
MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTaaawedpaaalasaRHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMscsgsstssELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGVFKN
Disordered region (IsUnstruct)
*********************************************************VNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLM*****************LAGISAGLVRMSVGYLGTLDQRWSQF***************
Disordered Region (DISOPRED)
*****************************************AAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS***A**KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ*S*****
Disordered Region (DISEMBL)
********************GDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS***********AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGVFKN
Disordered Region (DISPRO)
************************************AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGVFKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q9SGU9	441	Methionine gamma-lyase OS	yes	no	0.962	0.981	0.765	0.0
P13254	398	Methionine gamma-lyase OS	yes	no	0.813	0.919	0.375	9e-48
O05394	379	Cystathionine gamma-lyase	yes	no	0.775	0.920	0.332	6e-43
P55218	403	O-succinylhomoserine sulf	no	no	0.702	0.784	0.345	4e-42
Q83A83	387	Cystathionine beta-lyase	yes	no	0.726	0.844	0.321	3e-41
P55217	563	Cystathionine gamma-synth	no	no	0.704	0.563	0.328	3e-41
Q1M0P5	380	Cystathionine gamma-synth	yes	no	0.775	0.918	0.324	7e-41
P56069	380	Cystathionine gamma-synth	yes	no	0.775	0.918	0.321	3e-40
A2RM21	380	Cystathionine beta-lyase	yes	no	0.813	0.963	0.306	4e-40
P0A4K2	380	Cystathionine beta-lyase	yes	no	0.813	0.963	0.306	4e-40

>sp|Q9SGU9|MGL_ARATH Methionine gamma-lyase OS=Arabidopsis thaliana GN=MGL PE=1 SV=1

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/440 (76%), Positives = 382/440 (86%), Gaps = 7/440 (1%)

Query: 3   ECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSI 62
           E  V S KKR+   +E DGD L   KKS L+   A  DPAAA+A+ RHEFGEHGGVNMSI
Sbjct: 9   EPLVFSGKKRNDRDDE-DGDALV-AKKSALAVCDA--DPAAAIANIRHEFGEHGGVNMSI 64

Query: 63  EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
           EASATFTVMEP+TMRRMF GELGPD DF++YSRHFNPTVLNLSRQMAALEGT+AAYCT+S
Sbjct: 65  EASATFTVMEPDTMRRMFTGELGPDNDFYVYSRHFNPTVLNLSRQMAALEGTQAAYCTSS 124

Query: 123 DKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN 182
              GMSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH  V 
Sbjct: 125 ---GMSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVA 181

Query: 183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADV 242
           +AIV+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADV
Sbjct: 182 NAIVEGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADV 241

Query: 243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL 302
           VVHSISKFISGGADIIAGAVCG  NLV  MMDL  G+LMLLGPTMN KVAFELSERIPHL
Sbjct: 242 VVHSISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHL 301

Query: 303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362
           GLRM+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETE
Sbjct: 302 GLRMREHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETE 361

Query: 363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 422
           EKAN+LM YLQN  QFGFMAVSLGYYETLMSCSGSSTSSEL+  +K  AGIS GLVRMSV
Sbjct: 362 EKANKLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSV 421

Query: 423 GYLGTLDQRWSQFEKALSRM 442
           GY+GTL+Q+W+QFEKA  RM
Sbjct: 422 GYVGTLEQKWTQFEKAFLRM 441

Catalyzes the degradation of L-methionine to alpha-ketobutyrate, methanethiol and ammonia. Exhibits a high activity toward L-methionine, L-ethionine, L-homocysteine and seleno-L-methionine, but not L-cysteine. Involved in an alternative cysteine biosynthesis pathway to the reverse trans-sulfuration pathway (methionine->homocysteine->cystathionine->cysteine) in which methanethiol is an intermediate. Mediates also an alternative isoleucine biosynthesis pathway in which 2-ketobutyrate is an intermediate.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 1

>sp|P13254|MEGL_PSEPU Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2

 Score =  191 bits (485), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 209/392 (53%), Gaps = 26/392 (6%)

Query: 54  EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
           +HGG  +  +  +ATFT    E     FAGE    +    YSR  NPT+  L  +MA+LE
Sbjct: 23  DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78

Query: 113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
           G EA    AS   GM AI+S L  L   G  V+   TLYG T A L H       +    
Sbjct: 79  GGEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRH 134

Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
           VD++D + + +A+    T+V+YFES +NP + +A+I  ++++A   G TVVVDNT+ +P 
Sbjct: 135 VDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY 193

Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
           +  P  LGAD+VVHS +K++SG  DI AG V G   LV+ +    QG   + G  ++P  
Sbjct: 194 LQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHD 251

Query: 292 AFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKE 348
           A  L   I  L LRM  HC  A + A    R  ++ L + YPGL   P + L +   ++ 
Sbjct: 252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP 310

Query: 349 YGFGGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 407
              GG++  +++    A  R MN LQ +++    AVSLG  E+L     S T S    EE
Sbjct: 311 ---GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEE 363

Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
           +A  GIS GLVR+SVG L  +D   +  ++AL
Sbjct: 364 RAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 394

Pseudomonas putida (taxid: 303)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|O05394|MCCB_BACSU Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1

 Score =  175 bits (444), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 199/373 (53%), Gaps = 24/373 (6%)

Query: 55  HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           HGG+    +  A +  + +  T ++  AG+       + YSR  NPT   L   +  LE 
Sbjct: 9   HGGITGDEKTGAVSVPIYQVSTYKQPKAGQ----HTGYEYSRTANPTRTALEALVTELES 64

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            EA Y  +S   GM+AI++V+M L +SG HVV    +YGGT+ ++T    R   I +TFV
Sbjct: 65  GEAGYAFSS---GMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVLNR-LGIESTFV 119

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D S  E V  AI +  TK +Y E+ +NP L + ++  ++ +A   GV ++VDNTF +P  
Sbjct: 120 DTSSREEVEKAI-RPNTKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYF 178

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P  LGAD+V+HS +K++ G +D++ G V   +  +   +   Q +    G  + P+ +
Sbjct: 179 QQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNS---TGGVLGPQDS 235

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKK-LGLKVL-YPGLEDHPHHELLKSMANKEYG 350
           + L   I  LGLRM+     A   A  ++    ++ L YPG  +HP HEL K+      G
Sbjct: 236 WLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGA---G 292

Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 410
           FGG++  D+ +EE+ +  +  L+ +     +A SLG  E+L+S     T + +  E +  
Sbjct: 293 FGGMISFDIGSEERVDAFLGNLKLFT----IAESLGAVESLISVPARMTHASIPRERRLE 348

Query: 411 AGISAGLVRMSVG 423
            GI+ GL+R+SVG
Sbjct: 349 LGITDGLIRISVG 361

Catalyzes the conversion of cystathionine to cysteine, and homocysteine to sulfide.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|P55218|METZ_PSEAE O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=metZ PE=1 SV=1

 Score =  172 bits (437), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 189/336 (56%), Gaps = 20/336 (5%)

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           +YSR+ NPTV     ++AALEG E A  TAS   GMSAI +++M LCSSG HV+ +R+++
Sbjct: 66  VYSRYTNPTVRTFEERIAALEGAEQAVATAS---GMSAILALVMSLCSSGDHVLVSRSVF 122

Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           G T +L   +F R   I   +  +SD     +A  +  TK+ + ES SNP   + +I  L
Sbjct: 123 GSTISLFDKYFKR-FGIQVDYPPLSDLAAWEAA-CKPNTKLFFVESPSNPLAELVDIAAL 180

Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 270
           + +AH KG  + VDN F +P +  P +LGADVV+HS +K+I G    + G V G    + 
Sbjct: 181 AEIAHAKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMK 240

Query: 271 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM-KKLGL-KVL 328
            ++    G L   GPT++P  A+   + +  L +RM+ H   AL  A  + ++ G+ +V 
Sbjct: 241 EVV----GFLRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLERQPGIERVY 296

Query: 329 YPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGY 387
           Y GL  HP HEL +    ++ GFG ++  D++   + A R ++  +  +    +  +LG 
Sbjct: 297 YAGLPSHPQHELAR---RQQSGFGAVVSFDVKGGRDAAWRFIDATRMVS----ITTNLGD 349

Query: 388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
            +T ++   +++   L+ E++A AGI   L+R++VG
Sbjct: 350 TKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVG 385

Catalyzes the formation of L-homocysteine from O-succinyl-L-homoserine (OSHS) and hydrogen sulfide. Can not use the other activated form of L-homoserine, O-acetyl-L-homoserine, as a substrate.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q83A83|METC_COXBU Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1

 Score =  170 bits (430), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 181/345 (52%), Gaps = 18/345 (5%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
           + YSR  NPT     R +A LE  +  +  AS   GM+A +++L +L   G HVV    +
Sbjct: 50  YEYSRSQNPTRFAYERCVADLESGQHGFAFAS---GMAATATIL-ELLQPGDHVVVMDDV 105

Query: 151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
           YGG++ L  +   R+  ++ +FVD +D   V  A V  +TK+L+ ES SNP L + ++ +
Sbjct: 106 YGGSYRLFENVRKRSAGLSFSFVDFTDENKVREA-VTAKTKMLWVESPSNPRLKIVDLAK 164

Query: 211 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG-AVCGPANL 268
           ++ +A +K +  V DNTF +P++  P  LG D+V HS +K+++G +DII G AV G    
Sbjct: 165 IAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKT 224

Query: 269 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LK 326
           +   +   Q A   +G    P  +F +   +  L +RM+ HC  A+  A+ ++K     +
Sbjct: 225 LAEQLKYLQNA---IGAIAAPFDSFMVLRGLKTLAIRMERHCENAMQLAQWLEKHPKVKR 281

Query: 327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 386
           V YPGL  HP H + K        FGG++ ++++ +   N     L+   Q   +A SLG
Sbjct: 282 VYYPGLPSHPQHSIAKKQMRY---FGGMISVELKCD--LNETKKVLER-CQLFTLAESLG 335

Query: 387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR 431
             E+L+      T + +   E+   GI+ G +R+SVG     D R
Sbjct: 336 GVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLR 380

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P55217|METB_ARATH Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 180/338 (53%), Gaps = 21/338 (6%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
           F Y R+ NPT + L  +++ALEG E+    AS   GM A + +L+ L  +GGH+V     
Sbjct: 224 FEYGRYGNPTTVVLEDKISALEGAESTLVMAS---GMCASTVMLLALVPAGGHIVTTTDC 280

Query: 151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
           Y  T   + +F P+   IT T +D +D   + +A+ + +  + + ES +NP L   +I  
Sbjct: 281 YRKTRIFMENFLPK-LGITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIEL 339

Query: 211 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 269
           +S++ H +G  V +D TF +PL      LGAD+VVHS +K+I G  D++AG +CG   LV
Sbjct: 340 VSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLV 399

Query: 270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK---KLGLK 326
           + + +LH     +LG T+NP  A+ +   +  L LR+++    A   A  ++   K+   
Sbjct: 400 SEIRNLHH----VLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVS-H 454

Query: 327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSL 385
           V YPGL  HP HEL K       GFGG++  +++ + E   + ++ L    +  ++A S 
Sbjct: 455 VYYPGLPSHPEHELAKRQMT---GFGGVVSFEIDGDIETTIKFVDSL----KIPYIAPSF 507

Query: 386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           G  E+++      +  +L  EE+   GI   LVR S G
Sbjct: 508 GGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFG 545

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q1M0P5|METB_HELPX Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1

 Score =  168 bits (426), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 188/373 (50%), Gaps = 24/373 (6%)

Query: 55  HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           HGG++      A +  + +  T R+   G        + YSR  NPT   L   +A LEG
Sbjct: 9   HGGISEDATTGAVSVPIYQTSTYRQDAIGH----HKGYEYSRSGNPTRFALEELIADLEG 64

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
               +  AS  AG+ A+ S+L     SG HV+    +YGGT  L      +   ++ T +
Sbjct: 65  GVKGFAFASGLAGIHAVFSLL----QSGDHVLLGDDVYGGTFRLFNKVLVKN-GLSCTII 119

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D SD   +  AI +  TK LY E+ SNP L + ++ + + +A D G+  +VDNTF +P  
Sbjct: 120 DTSDLSQIKKAI-KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY 178

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
            +P  LGAD+VVHS +K++ G +D++AG V      +   +   Q A   +G  + P+ +
Sbjct: 179 QNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA---IGGVLGPQDS 235

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           + L   I  LGLRM+ H   AL  A  ++K     +V YPGL  HP++EL K       G
Sbjct: 236 WLLQRGIKTLGLRMQAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMR---G 292

Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 410
           F G+L   ++ + +A   +  L+ +     +  SLG  E+L+      T + +   ++  
Sbjct: 293 FSGMLSFTLKNDSEATPFVESLKLF----ILGESLGGVESLVGVPAFMTHACIPKTQREA 348

Query: 411 AGISAGLVRMSVG 423
           AGI  GLVR+SVG
Sbjct: 349 AGIRDGLVRLSVG 361

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction (By similarity). In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (taxid: 210)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|P56069|METB_HELPY Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=3 SV=1

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 187/373 (50%), Gaps = 24/373 (6%)

Query: 55  HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           HGG++      A +  + +  T R+   G        + YSR  NPT   L   +A LEG
Sbjct: 9   HGGISEDATTGAVSVPIYQTSTYRQDAIGR----HKGYEYSRSGNPTRFALEELIADLEG 64

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
               +  AS  AG+ A+ S+L     SG HV+    +YGGT  L      +   ++ T +
Sbjct: 65  GVKGFAFASGLAGIHAVFSLL----QSGDHVLLGDDVYGGTFRLFNQVLVKN-GLSCTII 119

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D SD   +  AI +  TK LY E+ SNP L + ++ + + +A D G+  +VDNTF +P  
Sbjct: 120 DTSDISQIKKAI-KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYY 178

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
            +P  LGAD+V HS +K++ G +D++AG V      +   +   Q A   +G  + P+ +
Sbjct: 179 QNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA---IGGVLGPQDS 235

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           + L   I  LGLRM+ H   AL  A  ++K     +V YPGL  HP++EL K       G
Sbjct: 236 WLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMR---G 292

Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 410
           F G+L   ++ + +A   +  L+ +     +  SLG  E+L+      T + +   ++  
Sbjct: 293 FSGMLSFTLKNDSEAVAFVESLKLF----ILGESLGGVESLVGIPAFMTHACIPKTQREA 348

Query: 411 AGISAGLVRMSVG 423
           AGI  GLVR+SVG
Sbjct: 349 AGIRDGLVRLSVG 361

Catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine (OSHS) and L-cysteine, via a gamma-replacement reaction. In the absence of thiol, catalyzes gamma-elimination to form 2-oxobutanoate, succinate and ammonia.

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|A2RM21|METC_LACLM Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 204/391 (52%), Gaps = 25/391 (6%)

Query: 55  HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           HGG++      A +  + +  T ++     LG  +++  YSR  NPT   L   +A LEG
Sbjct: 10  HGGISTDKTTGAVSVPIYQTSTYKQ---NGLGQPKEYE-YSRSGNPTRHALEELIADLEG 65

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
               +  +S  AG+ A+    + L S+G H++ A  +YGGT  L+     +   I    V
Sbjct: 66  GVQGFAFSSGLAGIHAV----LSLFSAGDHIILADDVYGGTFRLMDKVLTK-TGIIYDLV 120

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D+S+ + + +A  +  TK +YFE+ SNP L V +I E+S +A       +VDNTF +P +
Sbjct: 121 DLSNLDDLKAAFKE-ETKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYL 179

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P  LGAD+V+HS +K++ G +D++AG V   +  + S +   Q +   +G  + P+ +
Sbjct: 180 QQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNS---IGAVLGPQDS 236

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYG 350
           + +   I  L LRM+ H   A   A  ++  K   KV YPGL  HP HE+ K   +    
Sbjct: 237 WLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMS---A 293

Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 410
           FGG++  ++  E   N + ++++N + F  +A SLG  E+L+      T + +  E +  
Sbjct: 294 FGGMISFELTDE---NAVKDFVENLSYFT-LAESLGGVESLIEVPAVMTHASIPKELREE 349

Query: 411 AGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441
            GI  GL+R+SVG +  ++   +  ++AL +
Sbjct: 350 IGIKDGLIRLSVG-VEAIEDLLTDIKEALEK 379

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. cremoris (strain MG1363) (taxid: 416870)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A4K2|METC_LACLA Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/391 (30%), Positives = 204/391 (52%), Gaps = 25/391 (6%)

Query: 55  HGGVNMSIEASA-TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           HGG++      A +  + +  T ++     LG  +++  YSR  NPT   L   +A LEG
Sbjct: 10  HGGISTDKTTGAVSVPIYQTSTYKQ---NGLGQPKEYE-YSRSGNPTRHALEELIADLEG 65

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
               +  +S  AG+ A+    + L S+G H++ A  +YGGT  L+     +   I    V
Sbjct: 66  GVQGFAFSSGLAGIHAV----LSLFSAGDHIILADDVYGGTFRLMDKVLTK-TGIIYDLV 120

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D+S+ + + +A  +  TK +YFE+ SNP L V +I E+S +A       +VDNTF +P +
Sbjct: 121 DLSNLDDLKAAFKE-ETKAIYFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYL 179

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P  LGAD+V+HS +K++ G +D++AG V   +  + S +   Q +   +G  + P+ +
Sbjct: 180 QQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNS---IGAVLGPQDS 236

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYG 350
           + +   I  L LRM+ H   A   A  ++  K   KV YPGL  HP HE+ K   +    
Sbjct: 237 WLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMS---A 293

Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 410
           FGG++  ++  E   N + ++++N + F  +A SLG  E+L+      T + +  E +  
Sbjct: 294 FGGMISFELTDE---NAVKDFVENLSYFT-LAESLGGVESLIEVPAVMTHASIPKELREE 349

Query: 411 AGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441
            GI  GL+R+SVG +  ++   +  ++AL +
Sbjct: 350 IGIKDGLIRLSVG-VEAIEDLLTDIKEALEK 379

The enzymatic degradation of amino acids in cheese is believed to generate aroma compounds and therefore to be essential for flavor development. Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine but is also able to catalyze an alpha, gamma elimination. With methionine as a substrate, it produces volatile sulfur compounds which are important for flavor formation in Gouda cheese.

Lactococcus lactis subsp. lactis (strain IL1403) (taxid: 272623)

EC: 4

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
224057996	454	predicted protein [Populus trichocarpa]	0.984	0.975	0.854	0.0
255555749	449	cystathionine gamma-synthase, putative [	0.971	0.973	0.839	0.0
225426590	438	PREDICTED: methionine gamma-lyase [Vitis	0.971	0.997	0.814	0.0
451811145	449	methionine gamma-lyase [Cucumis melo]	0.96	0.962	0.780	0.0
449456795	450	PREDICTED: methionine gamma-lyase-like [	0.962	0.962	0.774	0.0
356502410	440	PREDICTED: methionine gamma-lyase-like [	0.966	0.988	0.770	0.0
307136088	417	cystathionine gamma-synthase [Cucumis me	0.902	0.973	0.816	0.0
15217709	441	methionine gamma-lyase [Arabidopsis thal	0.962	0.981	0.765	0.0
356547511	440	PREDICTED: methionine gamma-lyase-like [	0.966	0.988	0.772	0.0
356535270	442	PREDICTED: methionine gamma-lyase-like [	0.977	0.995	0.766	0.0

>gi|224057996|ref|XP_002299428.1| predicted protein [Populus trichocarpa] gi|222846686|gb|EEE84233.1| predicted protein [Populus trichocarpa]

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/448 (85%), Positives = 414/448 (92%), Gaps = 5/448 (1%)

Query: 5   FVLSSKKRSAGTEETDGDDLYKTKKSMLSTA--AAWEDPAAALASARHEFGEHGGVNMSI 62
           FV S KKRS+  ++ D D +   KKSMLST   + WEDPAAALASARHEFGEHGGVNMSI
Sbjct: 10  FVFSGKKRSSTGQDGDDDFIVSNKKSMLSTGLPSMWEDPAAALASARHEFGEHGGVNMSI 69

Query: 63  EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
           EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNL RQMAALEGTEAAYCTAS
Sbjct: 70  EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTAS 129

Query: 123 DKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN 182
              GMSAISSVL+QLCSSGGH+VA+RTLYGGTHALLTHF PRACNITTTFVDI+DHEMV 
Sbjct: 130 ---GMSAISSVLLQLCSSGGHMVASRTLYGGTHALLTHFLPRACNITTTFVDINDHEMVK 186

Query: 183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADV 242
           +A+V+G+TKVLYFESISNPTL VANIPELSR+AHDKG TVVVDNTFSP+VLSPARLGADV
Sbjct: 187 NAMVEGQTKVLYFESISNPTLTVANIPELSRIAHDKGATVVVDNTFSPMVLSPARLGADV 246

Query: 243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL 302
           VVHSISKFISGGADIIAGAVCGPANLVNSMMDL  GALMLLGPTMN KVAFELSERIPHL
Sbjct: 247 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLQHGALMLLGPTMNAKVAFELSERIPHL 306

Query: 303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362
           GLRMKEHCHRA+++A ++KKLGL V+YPGLEDHP HELLKSMANKEYGFGGLLC+DMETE
Sbjct: 307 GLRMKEHCHRAMVYATKIKKLGLNVIYPGLEDHPQHELLKSMANKEYGFGGLLCIDMETE 366

Query: 363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 422
           EKANRLMN+LQN  QFGFMAVSLGYYETLMSCSGSSTSSELN EE+ALAGIS GLVR+SV
Sbjct: 367 EKANRLMNHLQNCTQFGFMAVSLGYYETLMSCSGSSTSSELNDEEQALAGISPGLVRISV 426

Query: 423 GYLGTLDQRWSQFEKALSRMQDSGVFKN 450
           G++GTL Q+WSQFEKA SR+QDSG++KN
Sbjct: 427 GFVGTLAQKWSQFEKAFSRLQDSGLYKN 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555749|ref|XP_002518910.1| cystathionine gamma-synthase, putative [Ricinus communis] gi|223541897|gb|EEF43443.1| cystathionine gamma-synthase, putative [Ricinus communis]

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/442 (83%), Positives = 409/442 (92%), Gaps = 5/442 (1%)

Query: 5   FVLSSKKRSAGTEETDG-DDLYKTKKSMLSTAAAW-EDPAAALASARHEFGEHGGVNMSI 62
           F+L+ KKR AG +E DG DD   +KKSML    A+ EDPAA LA++RHEFGEHGGVNMSI
Sbjct: 9   FLLAGKKRGAGQDEFDGGDDFIVSKKSMLPPGVAYGEDPAAGLAASRHEFGEHGGVNMSI 68

Query: 63  EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
           EASATFTVMEP+TMRRMF+GELGPDRDFFIYSRHFNPTVLNL RQMAALEGTEAAYCTAS
Sbjct: 69  EASATFTVMEPDTMRRMFSGELGPDRDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTAS 128

Query: 123 DKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN 182
              GMSAISSV +QLCSSGGHVVA+RTLYGGTHALL+HF PRACNITTTFV+I D EMV 
Sbjct: 129 ---GMSAISSVFLQLCSSGGHVVASRTLYGGTHALLSHFLPRACNITTTFVEIGDIEMVK 185

Query: 183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADV 242
           +AIV+G+TKV YFESI+NPTL VANIPELSR+AHDKGVTVVVDNTF+P+V+SPARLGADV
Sbjct: 186 NAIVEGKTKVFYFESIANPTLTVANIPELSRIAHDKGVTVVVDNTFAPMVISPARLGADV 245

Query: 243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL 302
           VVHSI+KFISGGADIIAGAVCGPA+LVNSMMDLHQGA+MLLGPTMN KVAF+LS RIPHL
Sbjct: 246 VVHSITKFISGGADIIAGAVCGPASLVNSMMDLHQGAIMLLGPTMNAKVAFDLSGRIPHL 305

Query: 303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362
           GLRMKEHCHRA+++A RMKKLGLKV+YPGLEDHPHH+LLKSMANK+YGFG LLCLDMETE
Sbjct: 306 GLRMKEHCHRAMVYATRMKKLGLKVIYPGLEDHPHHQLLKSMANKDYGFGALLCLDMETE 365

Query: 363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 422
           EKANRL+N+LQNY QFGFMAVSLGYYETLMS SGSSTSSELNAEEK LAGIS GL+RMSV
Sbjct: 366 EKANRLLNHLQNYTQFGFMAVSLGYYETLMSVSGSSTSSELNAEEKKLAGISPGLIRMSV 425

Query: 423 GYLGTLDQRWSQFEKALSRMQD 444
           GYLGTL+Q+WSQFEKALSRM++
Sbjct: 426 GYLGTLEQKWSQFEKALSRMKE 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426590|ref|XP_002280162.1| PREDICTED: methionine gamma-lyase [Vitis vinifera]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/443 (81%), Positives = 393/443 (88%), Gaps = 6/443 (1%)

Query: 1   MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNM 60
           MA   V + KKR    +E   D L   K + L   A  EDP AALA ARHEFGEHGGVNM
Sbjct: 1   MATSVVHAGKKRKGADDE---DHLVAKKSASLPAVAKGEDPMAALAMARHEFGEHGGVNM 57

Query: 61  SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120
           SIEASATFTVMEP+TMRRMF+GELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT
Sbjct: 58  SIEASATFTVMEPDTMRRMFSGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 117

Query: 121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 180
           +S   GMSAIS+ L+QLCSSG H+VA+RTLYGGTHALLTHFFPR CNITT+FVDI D +M
Sbjct: 118 SS---GMSAISAALLQLCSSGDHIVASRTLYGGTHALLTHFFPRTCNITTSFVDIKDLDM 174

Query: 181 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGA 240
           V+ AI++GRTKVLYFE+I+NP L+VAN+PEL R+AHDKG+TVVVDNTF+P+V+SPA+LGA
Sbjct: 175 VDGAIIEGRTKVLYFEAIANPVLSVANVPELCRVAHDKGLTVVVDNTFAPMVMSPAKLGA 234

Query: 241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 300
           DVVVHSISKFISGGADIIAGAVCGPA LVNSMMDLHQGALMLLGPTMNPKVAFELSERIP
Sbjct: 235 DVVVHSISKFISGGADIIAGAVCGPAKLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 294

Query: 301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 360
           HLGLRMKEHC RAL +A RMKKLGLKV+YPGLE HP H +LKS+AN +YGFGGLLCLDM 
Sbjct: 295 HLGLRMKEHCRRALEYATRMKKLGLKVIYPGLEGHPDHTVLKSIANLDYGFGGLLCLDMG 354

Query: 361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 420
           TEEKANRLMN LQN  QFGFMAVSLGYYETLMSCSGSSTSSE+NAEEKALAGIS GLVRM
Sbjct: 355 TEEKANRLMNLLQNSTQFGFMAVSLGYYETLMSCSGSSTSSEMNAEEKALAGISPGLVRM 414

Query: 421 SVGYLGTLDQRWSQFEKALSRMQ 443
           SVGY GTL+QRWSQFEKALSRMQ
Sbjct: 415 SVGYSGTLEQRWSQFEKALSRMQ 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451811145|gb|AGF70153.1| methionine gamma-lyase [Cucumis melo]

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/437 (78%), Positives = 384/437 (87%), Gaps = 5/437 (1%)

Query: 11  KRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTV 70
           KR +  E  D     K   +M+S+    EDPAAA+A+ RHEFGEHGGVNMSIEASATFTV
Sbjct: 13  KRPSPDESDDVKTDSKKPTAMISSL--LEDPAAAIANTRHEFGEHGGVNMSIEASATFTV 70

Query: 71  MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAI 130
           MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT AAYCT+S   GMSAI
Sbjct: 71  MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTAAAYCTSS---GMSAI 127

Query: 131 SSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRT 190
           ++VL+QL +SG HVVA+RTLYGGTHAL+ HFFPR  NITTTFVDI D + V  AIV+G+T
Sbjct: 128 AAVLLQLLASGDHVVASRTLYGGTHALMAHFFPRTSNITTTFVDIGDLKEVEKAIVEGKT 187

Query: 191 KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKF 250
           KVLYFES+SNPTLAVANIPEL R+ H+KGVTVVVDNTF+P++LSPARLGADVVVHSISKF
Sbjct: 188 KVLYFESVSNPTLAVANIPELCRIGHEKGVTVVVDNTFAPMILSPARLGADVVVHSISKF 247

Query: 251 ISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHC 310
           ISGGADIIAGAVCGP  LVNSMMDL QG+LMLLGPTMN KVAFELSERIPHL LRMKEHC
Sbjct: 248 ISGGADIIAGAVCGPTKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRMKEHC 307

Query: 311 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN 370
            RA +FA RMKK GLKV+YPGLEDHP H+L+KS+AN EYGFGG+LC+DM TEE+AN+LM+
Sbjct: 308 RRASVFAERMKKAGLKVIYPGLEDHPQHQLMKSLANPEYGFGGMLCVDMGTEERANKLMS 367

Query: 371 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 430
            LQN  QFGFMAVSLGYYETLMSCSGSSTSSE++ EE+ LAGIS GLVRMS+GY+GTL+Q
Sbjct: 368 ILQNTTQFGFMAVSLGYYETLMSCSGSSTSSEMSGEERELAGISPGLVRMSIGYMGTLEQ 427

Query: 431 RWSQFEKALSRMQDSGV 447
           +WSQFEKAL+++QD GV
Sbjct: 428 KWSQFEKALAKVQDIGV 444

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456795|ref|XP_004146134.1| PREDICTED: methionine gamma-lyase-like [Cucumis sativus] gi|449527859|ref|XP_004170926.1| PREDICTED: methionine gamma-lyase-like [Cucumis sativus]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/439 (77%), Positives = 384/439 (87%), Gaps = 6/439 (1%)

Query: 12  RSAGTEETDGDD---LYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATF 68
           R      +DG D   L  +KK     ++  EDPAAA+A+ RHEFGEHGGVNMSIEASATF
Sbjct: 10  RGTKRPSSDGSDDVKLADSKKPTAMISSLLEDPAAAIANTRHEFGEHGGVNMSIEASATF 69

Query: 69  TVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMS 128
           TVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT AAYCT+S   GMS
Sbjct: 70  TVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTAAAYCTSS---GMS 126

Query: 129 AISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG 188
           AI++VL+QL +SG HVVA+RTLYGGTHAL+ HFFPR  NITTTFVDI D + V  AIV+G
Sbjct: 127 AIAAVLLQLLASGDHVVASRTLYGGTHALMAHFFPRTSNITTTFVDIGDLKEVEKAIVEG 186

Query: 189 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSIS 248
           +TKVLYFES+SNPTLAVANIPEL R+ H+KGVTVVVDNTF+P++LSPARLGADVVVHSIS
Sbjct: 187 KTKVLYFESVSNPTLAVANIPELCRIGHEKGVTVVVDNTFAPMILSPARLGADVVVHSIS 246

Query: 249 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE 308
           KFISGGADIIAGAVCGP  LVNSMMDL QG+LMLLGPTMN KVAFELSERIPHL LRMKE
Sbjct: 247 KFISGGADIIAGAVCGPTKLVNSMMDLRQGSLMLLGPTMNAKVAFELSERIPHLSLRMKE 306

Query: 309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL 368
           HC RA +FA RMKK GLKV+YPGL DHP H+L+KS+A+ EYGFGG+LC+DM TEEKAN+L
Sbjct: 307 HCRRASVFAERMKKAGLKVVYPGLPDHPQHQLMKSLASPEYGFGGMLCVDMGTEEKANKL 366

Query: 369 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL 428
           M+ LQN  QFGFMAVSLGYYETLMSCSGSSTSSE++ EE+ LAGIS GLVRMS+GY+GTL
Sbjct: 367 MSILQNTTQFGFMAVSLGYYETLMSCSGSSTSSEMSGEERELAGISPGLVRMSIGYMGTL 426

Query: 429 DQRWSQFEKALSRMQDSGV 447
           +Q+WSQFEKAL+++QD+GV
Sbjct: 427 EQKWSQFEKALAKVQDNGV 445

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502410|ref|XP_003520012.1| PREDICTED: methionine gamma-lyase-like [Glycine max]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/444 (77%), Positives = 388/444 (87%), Gaps = 9/444 (2%)

Query: 1   MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNM 60
           MAE  V +++KRS+G +    +D  + +K+M+   A   DPA ALA  RHEFGEHGGVNM
Sbjct: 1   MAESAV-TNRKRSSGDDAVSEND--RKRKNMV---ARNMDPAEALALTRHEFGEHGGVNM 54

Query: 61  SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120
           SIEASATFTVMEPET+ RMFAGELGPDRDFFIYSRHFNPTV+NL R MAALEGTEAAYCT
Sbjct: 55  SIEASATFTVMEPETLGRMFAGELGPDRDFFIYSRHFNPTVVNLGRHMAALEGTEAAYCT 114

Query: 121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 180
           AS   GM+AISSVL+QLCS+GGHVVA+ TLYGGTHALLTHF P  CNITTTFVDI+D E 
Sbjct: 115 AS---GMAAISSVLLQLCSTGGHVVASTTLYGGTHALLTHFLPGKCNITTTFVDIADLES 171

Query: 181 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGA 240
           V SAIV+G+T VLYFES++NP+L VA+IPEL R+ H KGVTVVVDNTF+P+V+SPARLGA
Sbjct: 172 VESAIVEGKTNVLYFESMANPSLKVADIPELCRVGHAKGVTVVVDNTFAPMVISPARLGA 231

Query: 241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 300
           DVVVHSISKFISGGADIIAGAVCGPA+LVNSMMDLH G+LMLLGPTMN KVAFELSERIP
Sbjct: 232 DVVVHSISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIP 291

Query: 301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 360
           HL LRMKEHCHRAL+FA R+KKLGLKV+YPGLEDHP H+LLKS+AN+EYG+GGLLC+DM 
Sbjct: 292 HLSLRMKEHCHRALVFATRLKKLGLKVIYPGLEDHPQHKLLKSIANREYGYGGLLCIDMG 351

Query: 361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 420
           T E+AN LM +LQN AQFGFMAVSLGYYETLMSCSGSSTSSE+  EE+ LAGIS GLVRM
Sbjct: 352 TVERANLLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSEMTEEEQKLAGISPGLVRM 411

Query: 421 SVGYLGTLDQRWSQFEKALSRMQD 444
           S+GY+GTL+Q+WSQ E AL R Q+
Sbjct: 412 SIGYIGTLEQKWSQMEMALERFQE 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136088|gb|ADN33936.1| cystathionine gamma-synthase [Cucumis melo subsp. melo]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/409 (81%), Positives = 373/409 (91%), Gaps = 3/409 (0%)

Query: 39  EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFN 98
           EDPAAA+A+ RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFN
Sbjct: 7   EDPAAAIANTRHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFN 66

Query: 99  PTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALL 158
           PTVLNLSRQMAALEGT AAYCT+S   GMSAI++VL+QL +SG HVVA+RTLYGGTHAL+
Sbjct: 67  PTVLNLSRQMAALEGTAAAYCTSS---GMSAIAAVLLQLLASGDHVVASRTLYGGTHALM 123

Query: 159 THFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK 218
            HFFPR  NITTTFVDI D + V  AIV+G+TKVLYFES+SNPTLAVANIPEL R+ H+K
Sbjct: 124 AHFFPRTSNITTTFVDIGDLKEVEKAIVEGKTKVLYFESVSNPTLAVANIPELCRIGHEK 183

Query: 219 GVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 278
           GVTVVVDNTF+P++LSPARLGADVVVHSISKFISGGADIIAGAVCGP  LVNSMMDL QG
Sbjct: 184 GVTVVVDNTFAPMILSPARLGADVVVHSISKFISGGADIIAGAVCGPTKLVNSMMDLRQG 243

Query: 279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH 338
           +LMLLGPTMN KVAFELSERIPHL LRMKEHC RA +FA RMKK GLKV+YPGLEDHP H
Sbjct: 244 SLMLLGPTMNAKVAFELSERIPHLSLRMKEHCRRASVFAERMKKAGLKVIYPGLEDHPQH 303

Query: 339 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 398
           +L+KS+AN EYGFGG+LC+DM TEE+AN+LM+ LQN  QFGFMAVSLGYYETLMSCSGSS
Sbjct: 304 QLMKSLANPEYGFGGMLCVDMGTEERANKLMSILQNTTQFGFMAVSLGYYETLMSCSGSS 363

Query: 399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV 447
           TSSE++ EE+ LAGIS GLVRMS+GY+GTL+Q+WSQFEKAL+++QD GV
Sbjct: 364 TSSEMSGEERELAGISPGLVRMSIGYMGTLEQKWSQFEKALAKVQDIGV 412

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217709|ref|NP_176647.1| methionine gamma-lyase [Arabidopsis thaliana] gi|75205145|sp|Q9SGU9.1|MGL_ARATH RecName: Full=Methionine gamma-lyase; Short=AtMGL; AltName: Full=L-methioninase gi|6633821|gb|AAF19680.1|AC009519_14 F1N19.23 [Arabidopsis thaliana] gi|16226491|gb|AAL16181.1|AF428413_1 At1g64660/F1N19_22 [Arabidopsis thaliana] gi|15450932|gb|AAK96737.1| similar to O-succinylhomoserine sulfhydrylase [Arabidopsis thaliana] gi|30387533|gb|AAP31932.1| At1g64660 [Arabidopsis thaliana] gi|110740851|dbj|BAE98522.1| similar to O-succinylhomoserine sulfhydrylase [Arabidopsis thaliana] gi|332196150|gb|AEE34271.1| methionine gamma-lyase [Arabidopsis thaliana]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/440 (76%), Positives = 382/440 (86%), Gaps = 7/440 (1%)

Query: 3   ECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSI 62
           E  V S KKR+   +E DGD L   KKS L+   A  DPAAA+A+ RHEFGEHGGVNMSI
Sbjct: 9   EPLVFSGKKRNDRDDE-DGDALV-AKKSALAVCDA--DPAAAIANIRHEFGEHGGVNMSI 64

Query: 63  EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
           EASATFTVMEP+TMRRMF GELGPD DF++YSRHFNPTVLNLSRQMAALEGT+AAYCT+S
Sbjct: 65  EASATFTVMEPDTMRRMFTGELGPDNDFYVYSRHFNPTVLNLSRQMAALEGTQAAYCTSS 124

Query: 123 DKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN 182
              GMSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH  V 
Sbjct: 125 ---GMSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVA 181

Query: 183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADV 242
           +AIV+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADV
Sbjct: 182 NAIVEGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADV 241

Query: 243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL 302
           VVHSISKFISGGADIIAGAVCG  NLV  MMDL  G+LMLLGPTMN KVAFELSERIPHL
Sbjct: 242 VVHSISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHL 301

Query: 303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362
           GLRM+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETE
Sbjct: 302 GLRMREHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETE 361

Query: 363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 422
           EKAN+LM YLQN  QFGFMAVSLGYYETLMSCSGSSTSSEL+  +K  AGIS GLVRMSV
Sbjct: 362 EKANKLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSV 421

Query: 423 GYLGTLDQRWSQFEKALSRM 442
           GY+GTL+Q+W+QFEKA  RM
Sbjct: 422 GYVGTLEQKWTQFEKAFLRM 441

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547511|ref|XP_003542155.1| PREDICTED: methionine gamma-lyase-like [Glycine max]

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/444 (77%), Positives = 384/444 (86%), Gaps = 9/444 (2%)

Query: 1   MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNM 60
           MAE  V++ K+  +GT++   ++  K K    +  A   DPAAALA  RHEFGEHGGVNM
Sbjct: 1   MAESAVVNRKR--SGTDDVVSENDGKRK----NVVAPDMDPAAALALTRHEFGEHGGVNM 54

Query: 61  SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120
           SIEASATFTVMEPET+ RMF GELGPDRDFFIYSRHFNPTVLNL R MAALEGTEAAYCT
Sbjct: 55  SIEASATFTVMEPETLCRMFTGELGPDRDFFIYSRHFNPTVLNLGRHMAALEGTEAAYCT 114

Query: 121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 180
           AS   GM+AISSVL+QLCSSGGHVVA+ TLYGGTHALLTHF P  CNI+TTFVDISD E 
Sbjct: 115 AS---GMAAISSVLLQLCSSGGHVVASTTLYGGTHALLTHFLPGKCNISTTFVDISDLES 171

Query: 181 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGA 240
           V SAIV+G+T VLYFES++NP+L VANIPEL R+ H KGVTVV DNTF+P+V+SPARLGA
Sbjct: 172 VESAIVEGKTNVLYFESMANPSLKVANIPELCRVGHAKGVTVVTDNTFAPMVISPARLGA 231

Query: 241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 300
           DVVVHSISKFISGGADIIAGAVCGPA+LVNSMMDLH G+LMLLGPTMN KVAFELSERIP
Sbjct: 232 DVVVHSISKFISGGADIIAGAVCGPASLVNSMMDLHDGSLMLLGPTMNAKVAFELSERIP 291

Query: 301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 360
           HL LRMKEHCHRAL+FA R+KKLGLKV+YPGLEDHP HELLKS+AN+EYG+GGLLC+DME
Sbjct: 292 HLSLRMKEHCHRALVFATRLKKLGLKVIYPGLEDHPQHELLKSIANREYGYGGLLCIDME 351

Query: 361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 420
           T E+AN LM +LQN AQFGFMAVSLGYYETLMSCSGSSTSS +  EE+ LAGIS GLVRM
Sbjct: 352 TVERANLLMAHLQNDAQFGFMAVSLGYYETLMSCSGSSTSSGMTEEEQKLAGISPGLVRM 411

Query: 421 SVGYLGTLDQRWSQFEKALSRMQD 444
           S+GY+GTL+Q+WSQ E AL R Q+
Sbjct: 412 SIGYIGTLEQKWSQMEIALDRFQE 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535270|ref|XP_003536171.1| PREDICTED: methionine gamma-lyase-like [Glycine max]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/449 (76%), Positives = 398/449 (88%), Gaps = 9/449 (2%)

Query: 1   MAECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTAAAWEDPAAALASARHEFGEHGGVNM 60
           M + +VL++ KR+  +++ DG +    KK +L    A    AAALASARHEFGEHGGVNM
Sbjct: 1   MGDTYVLATPKRNR-SDDVDGGE---AKKLLLQQGEADP--AAALASARHEFGEHGGVNM 54

Query: 61  SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT 120
           SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVL+LSR MAALEGTEAAYCT
Sbjct: 55  SIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLSLSRLMAALEGTEAAYCT 114

Query: 121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM 180
           AS   GMSAIS+VL+QLCS G HVVA+RTLYGGTHALL+HF PR C I+T+FV+++D +M
Sbjct: 115 AS---GMSAISAVLLQLCSHGEHVVASRTLYGGTHALLSHFLPRTCGISTSFVEVTDLDM 171

Query: 181 VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGA 240
           V++AIV+G+TKVLYFES+SNPTL VANIPEL  +AH KGVTVVVDNTF+P+VLSPARLGA
Sbjct: 172 VDAAIVEGKTKVLYFESVSNPTLTVANIPELCHMAHRKGVTVVVDNTFAPMVLSPARLGA 231

Query: 241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP 300
           DVVVHSISKFISGGADIIAGAVCGPA LVN+MMDL QG+LMLLGPTMN KVAFELSERIP
Sbjct: 232 DVVVHSISKFISGGADIIAGAVCGPARLVNAMMDLQQGSLMLLGPTMNAKVAFELSERIP 291

Query: 301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME 360
           HLGLRMKEH +RAL FA R+K+LG++V+YPGLE+HP H+LLKSM NK+YG+GGL+C+DME
Sbjct: 292 HLGLRMKEHSNRALEFATRLKRLGMRVIYPGLEEHPQHQLLKSMHNKDYGYGGLMCVDME 351

Query: 361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 420
           TEE+ANR M++LQNY QFGFMAVSLGYYETLMSCSGSSTSSEL+ EEK LAGIS GLVRM
Sbjct: 352 TEERANRFMSHLQNYGQFGFMAVSLGYYETLMSCSGSSTSSELSTEEKELAGISPGLVRM 411

Query: 421 SVGYLGTLDQRWSQFEKALSRMQDSGVFK 449
           S+GY+GTL+Q+WSQ +KAL+R+ DSG  K
Sbjct: 412 SIGYIGTLEQKWSQLQKALTRLNDSGYNK 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2019449	441	MGL "AT1G64660" [Arabidopsis t	0.962	0.981	0.729	4.5e-169
TIGR_CMR|SPO_A0318	400	SPO_A0318 "methionine gamma-ly	0.777	0.875	0.355	3.8e-46
UNIPROTKB|Q8EG02	397	mdeA "Methionine gamma-lyase M	0.828	0.939	0.342	7.9e-46
TIGR_CMR|SO_1812	397	SO_1812 "methionine gamma-lyas	0.828	0.939	0.342	7.9e-46
TIGR_CMR|CPS_1705	413	CPS_1705 "methionine gamma-lya	0.824	0.898	0.302	2.1e-45
UNIPROTKB|Q81LL6	377	BAS4268 "Cys/Met metabolism PL	0.697	0.832	0.367	2.7e-45
TIGR_CMR|BA_4600	377	BA_4600 "cystathionine beta-ly	0.697	0.832	0.367	2.7e-45
UNIPROTKB|Q4KA19	424	mdeA "Methionine gamma-lyase"	0.751	0.797	0.337	3.2e-42
TIGR_CMR|CBU_2025	387	CBU_2025 "cystathionine beta-l	0.795	0.925	0.312	1.7e-41
TAIR|locus:2102072	563	MTO1 "METHIONINE OVERACCUMULAT	0.706	0.564	0.323	4.6e-41

TAIR|locus:2019449 MGL "AT1G64660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1644 (583.8 bits), Expect = 4.5e-169, P = 4.5e-169
 Identities = 321/440 (72%), Positives = 364/440 (82%)

Query:     3 ECFVLSSKKRSAGTEETDGDDLYKTKKSMLSTXXXXXXXXXXXXXXRHEFGEHGGVNMSI 62
             E  V S KKR+   +E DGD L   KKS L+               RHEFGEHGGVNMSI
Sbjct:     9 EPLVFSGKKRNDRDDE-DGDALV-AKKSALAVCDADPAAAIANI--RHEFGEHGGVNMSI 64

Query:    63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTAS 122
             EASATFTVMEP+TMRRMF GELGPD DF++YSRHFNPTVLNLSRQMAALEGT+AAYCT+S
Sbjct:    65 EASATFTVMEPDTMRRMFTGELGPDNDFYVYSRHFNPTVLNLSRQMAALEGTQAAYCTSS 124

Query:   123 DKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN 182
                GMSAISSV++QLCSSGGHVVAA TLYGGTHALL+HF PR CNITT+FVDI+DH  V 
Sbjct:   125 ---GMSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCNITTSFVDITDHGAVA 181

Query:   183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADV 242
             +AIV+GRT+VLYFES++NPTL VA+IPELSR+AH+KGVTVVVDNTF+P+VLSPA+LGADV
Sbjct:   182 NAIVEGRTQVLYFESVANPTLTVADIPELSRMAHEKGVTVVVDNTFAPMVLSPAKLGADV 241

Query:   243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL 302
             VVHSISKFISGGADIIAGAVCG  NLV  MMDL  G+LMLLGPTMN KVAFELSERIPHL
Sbjct:   242 VVHSISKFISGGADIIAGAVCGSENLVKEMMDLRGGSLMLLGPTMNAKVAFELSERIPHL 301

Query:   303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362
             GLRM+EH HRA ++A RM+ LG+KV+YPGLE HP H+L K M N++YG+GGLL +DMETE
Sbjct:   302 GLRMREHSHRAQVYAERMRDLGMKVIYPGLETHPQHKLFKGMVNRDYGYGGLLSIDMETE 361

Query:   363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 422
             EKAN+LM YLQN  QFGFMAVSLGYYETLM         EL+  +K  AGIS GLVRMSV
Sbjct:   362 EKANKLMAYLQNATQFGFMAVSLGYYETLMSCSGSSTSSELDPSQKEAAGISPGLVRMSV 421

Query:   423 GYLGTLDQRWSQFEKALSRM 442
             GY+GTL+Q+W+QFEKA  RM
Sbjct:   422 GYVGTLEQKWTQFEKAFLRM 441

GO:0003824 "catalytic activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0018826 "methionine gamma-lyase activity" evidence=IDA

GO:0019458 "methionine catabolic process via 2-oxobutanoate" evidence=TAS

GO:0009970 "cellular response to sulfate starvation" evidence=IEP

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0042631 "cellular response to water deprivation" evidence=IEP

GO:0006730 "one-carbon metabolic process" evidence=RCA

TIGR_CMR|SPO_A0318 SPO_A0318 "methionine gamma-lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 134/377 (35%), Positives = 202/377 (53%)

Query:    54 EH-GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
             +H G +   +  ++TF     E    MFAGE    R   IYSR  NPT+  L +++A LE
Sbjct:    20 DHEGALTPPLHLTSTFAFETAEAGGEMFAGE----RQGHIYSRISNPTLDLLEQRIATLE 75

Query:   113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
             G EA    +S   GM AI++VL  L S G  V+  +TLYG T + + H   +   +T T 
Sbjct:    76 GAEAGLALSS---GMGAITAVLWTLLSPGDEVIVDKTLYGCTFSYMRHGLAK-WGVTITH 131

Query:   173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PL 231
             VD++D E + +AI   +T+V+YFE+ +NP + + +I  +S +AH    +VVVDNT++ P 
Sbjct:   132 VDLTDPENLKTAI-SDKTRVVYFETPANPNMRLVDIAAVSEIAHGASASVVVDNTYATPY 190

Query:   232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
             +  P  +GAD+V+HS +K++ G  D++AG V G A  ++ +  L+ G   + G  M P  
Sbjct:   191 LTRPIEMGADIVLHSATKYLGGHGDVVAGLVVGGAEQISEIR-LY-GMKDMTGAVMAPFN 248

Query:   292 AFELSERIPHLGLRMKEHCHRALIFARRMKK---LGLKVLYPGLEDHPHHELLKSMANKE 348
             A  +   +  L LRM  HC  A + A  +     +G +V +PGL     H L    AN++
Sbjct:   249 AMLILRGLKTLALRMDRHCASAQVVAEWLAAHPAVG-EVHFPGLTSFSQHAL----ANQQ 303

Query:   349 YGF-GGLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAE 406
                 G ++  +++    A R +MN L   A+    AVSLG  ETL+             E
Sbjct:   304 MAQPGAMIAFELKGGMDAGRAMMNRLNMIAR----AVSLGDAETLIQHPASMTHSTYTPE 359

Query:   407 EKALAGISAGLVRMSVG 423
             E+A  GIS GLVR+SVG
Sbjct:   360 ERAEHGISDGLVRLSVG 376

GO:0009087 "methionine catabolic process" evidence=ISS

GO:0009093 "cysteine catabolic process" evidence=ISS

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

UNIPROTKB|Q8EG02 mdeA "Methionine gamma-lyase MdeA" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 136/397 (34%), Positives = 207/397 (52%)

Query:    50 HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMA 109
             HE    G +   +  +ATF     +     FAG   P    +IY+R  NPTV  L R+MA
Sbjct:    20 HEREAFGSLVTPLYQTATFVFDSAQQGGERFAGN-EPG---YIYTRLGNPTVAELERKMA 75

Query:   110 ALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 169
              LE  EAA  TAS   GM A+S+ L+     G H+VA+  +YG T AL+T+ F R   I 
Sbjct:    76 ILERAEAAAATAS---GMGAVSAALLANLQIGDHLVASNAVYGCTFALMTNQFARF-GIE 131

Query:   170 TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF- 228
              T VD SD E++  AI +  TKV++ E+  NP L V ++  ++ +A    +T +VDNTF 
Sbjct:   132 VTLVDFSDVELIERAI-KPNTKVIFCETPVNPHLQVFDLSAIAAIAKRHSLTSIVDNTFM 190

Query:   229 SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTM 287
             +PL+  P  LG DVVVHS +K+++G  D+IAG VCG  A L     ++    L  +G  M
Sbjct:   191 TPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVKYEI----LKDIGAVM 246

Query:   288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMA 345
             +P  A+ +   +  L +R++ HC  A   A  +++     +V YPGL+ H  H  +    
Sbjct:   247 SPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKSHSGHRFIGQQM 306

Query:   346 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNA 405
              +    GG++  ++  +    + M ++ N   F  +AVSLG  E+L+           + 
Sbjct:   307 RRA---GGVIAFELAAD--FTQAMAFVGNLKLFS-IAVSLGDAESLIQHPASMTHSPYSP 360

Query:   406 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
             E +A AGI   L+R+SVG L   D   +   +AL+ +
Sbjct:   361 EARAAAGIGDNLLRISVG-LEDCDDIIADLSQALAAL 396

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|SO_1812 SO_1812 "methionine gamma-lyase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 136/397 (34%), Positives = 207/397 (52%)

Query:    50 HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMA 109
             HE    G +   +  +ATF     +     FAG   P    +IY+R  NPTV  L R+MA
Sbjct:    20 HEREAFGSLVTPLYQTATFVFDSAQQGGERFAGN-EPG---YIYTRLGNPTVAELERKMA 75

Query:   110 ALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT 169
              LE  EAA  TAS   GM A+S+ L+     G H+VA+  +YG T AL+T+ F R   I 
Sbjct:    76 ILERAEAAAATAS---GMGAVSAALLANLQIGDHLVASNAVYGCTFALMTNQFARF-GIE 131

Query:   170 TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF- 228
              T VD SD E++  AI +  TKV++ E+  NP L V ++  ++ +A    +T +VDNTF 
Sbjct:   132 VTLVDFSDVELIERAI-KPNTKVIFCETPVNPHLQVFDLSAIAAIAKRHSLTSIVDNTFM 190

Query:   229 SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTM 287
             +PL+  P  LG DVVVHS +K+++G  D+IAG VCG  A L     ++    L  +G  M
Sbjct:   191 TPLLQQPIALGIDVVVHSATKYLNGHGDVIAGIVCGSEAQLHRVKYEI----LKDIGAVM 246

Query:   288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMA 345
             +P  A+ +   +  L +R++ HC  A   A  +++     +V YPGL+ H  H  +    
Sbjct:   247 SPHDAWLILRGLKTLDVRLQRHCESAQRVAEFLEQHPAVTRVYYPGLKSHSGHRFIGQQM 306

Query:   346 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNA 405
              +    GG++  ++  +    + M ++ N   F  +AVSLG  E+L+           + 
Sbjct:   307 RRA---GGVIAFELAAD--FTQAMAFVGNLKLFS-IAVSLGDAESLIQHPASMTHSPYSP 360

Query:   406 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
             E +A AGI   L+R+SVG L   D   +   +AL+ +
Sbjct:   361 EARAAAGIGDNLLRISVG-LEDCDDIIADLSQALAAL 396

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|CPS_1705 CPS_1705 "methionine gamma-lyase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 119/393 (30%), Positives = 216/393 (54%)

Query:    54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             + G +   +  ++TF     +     FAGE     + +IY+R  NPT   L +++AA+E 
Sbjct:    23 QFGSLATPLYQTSTFIFDNAQQGGDRFAGE----SEGYIYTRLGNPTTRQLEQRVAAMEC 78

Query:   114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
              + A  TA+   GM+A+S+ L+    +G H+++++ +YG + AL+ H   +  NI  TFV
Sbjct:    79 MDDAAATAT---GMAAVSAALLTNLQAGDHMISSKAVYGCSFALMNHMLKKF-NIEVTFV 134

Query:   174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
             D+++ + + +AI +  TK+++ E+  NP L V ++ ++  +A    +  +VDNTF +P++
Sbjct:   135 DMTEPDNIKAAIKEN-TKLVFLETPINPNLVVLDLEKICAIAKAHNLLSIVDNTFLTPVL 193

Query:   233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
               PA+ GAD+VVHS +K+++G  D++AG VC    ++N   ++    L  +G T++P  A
Sbjct:   194 QQPAKFGADIVVHSATKYLNGHGDVVAGVVCANFEMIN---EIKMTTLKDIGATISPHDA 250

Query:   293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
             + +   +  L +RM  HC  A   A  +++  +  +V YPGL+ H  +   K + N+   
Sbjct:   251 WLIMRGLKTLPIRMDRHCSNAQTVAEFLEQHPMVDEVYYPGLKSHSGN---KFVGNQMKA 307

Query:   351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKAL 410
              GG++  ++ T+    +   ++     F  +AVSLG  E+L+             EE+A 
Sbjct:   308 AGGVIAFELNTDLTGGK--TFIDAMELFS-IAVSLGDAESLIQHPASMTHSPYTPEERAD 364

Query:   411 AGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443
             AGIS  L+R+SVG L  +D   S   +AL +++
Sbjct:   365 AGISDSLIRISVG-LENVDDIISDLTQALEKVK 396

GO:0009087 "methionine catabolic process" evidence=ISS

GO:0009093 "cysteine catabolic process" evidence=ISS

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

UNIPROTKB|Q81LL6 BAS4268 "Cys/Met metabolism PLP-dependent enzyme" [Bacillus anthracis (taxid:1392)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 123/335 (36%), Positives = 184/335 (54%)

Query:    93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
             YSR  NPT   L   +A LE   A +   S   GM+AI++ +M L S G HV+    +YG
Sbjct:    44 YSRTGNPTRAALEEMIAVLENGHAGFAFGS---GMAAITATIM-LFSKGDHVILTDDVYG 99

Query:   153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
             GT+ ++T    R   I  TFVD ++ E V  AI +  TK +Y E+ +NP L + +I ++S
Sbjct:   100 GTYRVITKVLNRF-GIEHTFVDTTNLEEVEEAI-RPNTKAIYVETPTNPLLKITDIKKIS 157

Query:   213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 271
              LA +KG+  ++DNTF +P   SP  LGAD+V+HS +K++ G +D++AG V    N    
Sbjct:   158 TLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVV--VNSPQL 215

Query:   272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH--CHRALI-FARRMKKLGLKVL 328
               DLH       G  + P+ +F L   +  LG+RM+EH    RA+  F     K+  KV 
Sbjct:   216 AEDLHF-VQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVN-KVY 273

Query:   329 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 388
             YPGL  H +HEL    AN   GFG ++  D+++EE  N+++  LQ +     +A SLG  
Sbjct:   274 YPGLASHQNHELATEQAN---GFGAIISFDVDSEETLNKVLERLQYFT----LAESLGAV 326

Query:   389 ETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
             E+L+          + A+ +   GI+  L+R+SVG
Sbjct:   327 ESLISIPSQMTHASIPADRRKELGITDTLIRISVG 361

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TIGR_CMR|BA_4600 BA_4600 "cystathionine beta-lyase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 123/335 (36%), Positives = 184/335 (54%)

Query:    93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
             YSR  NPT   L   +A LE   A +   S   GM+AI++ +M L S G HV+    +YG
Sbjct:    44 YSRTGNPTRAALEEMIAVLENGHAGFAFGS---GMAAITATIM-LFSKGDHVILTDDVYG 99

Query:   153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
             GT+ ++T    R   I  TFVD ++ E V  AI +  TK +Y E+ +NP L + +I ++S
Sbjct:   100 GTYRVITKVLNRF-GIEHTFVDTTNLEEVEEAI-RPNTKAIYVETPTNPLLKITDIKKIS 157

Query:   213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 271
              LA +KG+  ++DNTF +P   SP  LGAD+V+HS +K++ G +D++AG V    N    
Sbjct:   158 TLAKEKGLLTIIDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVV--VNSPQL 215

Query:   272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH--CHRALI-FARRMKKLGLKVL 328
               DLH       G  + P+ +F L   +  LG+RM+EH    RA+  F     K+  KV 
Sbjct:   216 AEDLHF-VQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVN-KVY 273

Query:   329 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 388
             YPGL  H +HEL    AN   GFG ++  D+++EE  N+++  LQ +     +A SLG  
Sbjct:   274 YPGLASHQNHELATEQAN---GFGAIISFDVDSEETLNKVLERLQYFT----LAESLGAV 326

Query:   389 ETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
             E+L+          + A+ +   GI+  L+R+SVG
Sbjct:   327 ESLISIPSQMTHASIPADRRKELGITDTLIRISVG 361

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

UNIPROTKB|Q4KA19 mdeA "Methionine gamma-lyase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 121/359 (33%), Positives = 184/359 (51%)

Query:    91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
             FIYSR  NPTV  L  ++  LE  E+A   +S   GM+AIS VL      G  VV+ +  
Sbjct:    62 FIYSRMSNPTVQTLEAKLQDLENAESAVAFSS---GMAAISGVLYSFLRHGQRVVSTKDS 118

Query:   151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
             YGGT+ +   F PR   +  T  +  D + + + I +G   +LY E+ +NPTL + +I  
Sbjct:   119 YGGTNKIFEEFLPRM-GVAVTLCETFDQQQIEAEIAKG-CDLLYLETPTNPTLKIVDIQR 176

Query:   211 LSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 269
             L   A   G  VV DNTF+ PL  +P  LG DVV+HS +KF+SG  D++ G  CG   L+
Sbjct:   177 LVAAAKQVGALVVADNTFATPLNQNPLALGVDVVIHSATKFLSGHGDVLGGVACGSEALM 236

Query:   270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM--KKLGLKV 327
             + +    +    + G +++P  A+ +   I  L LRM++  H A   A+ +  + L   V
Sbjct:   237 SQVRHYRE----INGASLDPFSAYLIIRGIKTLALRMRQQQHSAAQLAQFLLNEPLVEAV 292

Query:   328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG 386
              YPGL +HP+H +  +      GFG ++   +    +   +L+  L+ YA     A +LG
Sbjct:   293 NYPGLPNHPNHAVACAQMR---GFGAIVSFVLVGGMDSVKQLLPRLR-YAH---CAGNLG 345

Query:   387 YYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 445
               ET+          E   EE+   GIS GLVR+SVG   T D   +  ++A + ++ S
Sbjct:   346 AVETIYGPARTTSHVENTLEERQALGISEGLVRISVGIEDT-DDLLADLQQAFAWLRQS 403

GO:0018826 "methionine gamma-lyase activity" evidence=ISS

TIGR_CMR|CBU_2025 CBU_2025 "cystathionine beta-lyase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 118/377 (31%), Positives = 190/377 (50%)

Query:    67 TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAG 126
             T  VM P      +A +       + YSR  NPT     R +A LE  +  +  AS   G
Sbjct:    26 TGAVMTPIYTASTYAQKSPGVHQGYEYSRSQNPTRFAYERCVADLESGQHGFAFAS---G 82

Query:   127 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIV 186
             M+A +++L +L   G HVV    +YGG++ L  +   R+  ++ +FVD +D   V  A+ 
Sbjct:    83 MAATATIL-ELLQPGDHVVVMDDVYGGSYRLFENVRKRSAGLSFSFVDFTDENKVREAVT 141

Query:   187 QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVH 245
               +TK+L+ ES SNP L + ++ +++ +A +K +  V DNTF+ P++  P  LG D+V H
Sbjct:   142 -AKTKMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTH 200

Query:   246 SISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL 304
             S +K+++G +DII G AV G    +   +   Q A+   G    P  +F +   +  L +
Sbjct:   201 SATKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAI---GAIAAPFDSFMVLRGLKTLAI 257

Query:   305 RMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE 362
             RM+ HC  A+  A+ ++K     +V YPGL  HP H + K      Y FGG++ ++++ +
Sbjct:   258 RMERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMR--Y-FGGMISVELKCD 314

Query:   363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSV 422
                N     L+   Q   +A SLG  E+L+          +   E+   GI+ G +R+SV
Sbjct:   315 --LNETKKVLER-CQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSV 371

Query:   423 GYLGTLDQRWSQFEKAL 439
             G     D R    E AL
Sbjct:   372 GIEAITDLR-HDLEAAL 387

GO:0004121 "cystathionine beta-lyase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

TAIR|locus:2102072 MTO1 "METHIONINE OVERACCUMULATION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 109/337 (32%), Positives = 179/337 (53%)

Query:    91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
             F Y R+ NPT + L  +++ALEG E+    AS   GM A + +L+ L  +GGH+V     
Sbjct:   224 FEYGRYGNPTTVVLEDKISALEGAESTLVMAS---GMCASTVMLLALVPAGGHIVTTTDC 280

Query:   151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
             Y  T   + +F P+   IT T +D +D   + +A+ + +  + + ES +NP L   +I  
Sbjct:   281 YRKTRIFMENFLPKL-GITVTVIDPADIAGLEAAVNEFKVSLFFTESPTNPFLRCVDIEL 339

Query:   211 LSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 269
             +S++ H +G  V +D TF+ PL      LGAD+VVHS +K+I G  D++AG +CG   LV
Sbjct:   340 VSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLV 399

Query:   270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK---KLGLK 326
             + + +LH     +LG T+NP  A+ +   +  L LR+++    A   A  ++   K+   
Sbjct:   400 SEIRNLHH----VLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVS-H 454

Query:   327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 386
             V YPGL  HP HEL K       GFGG++  +++ + +    + ++ +  +  ++A S G
Sbjct:   455 VYYPGLPSHPEHELAKRQMT---GFGGVVSFEIDGDIETT--IKFVDSL-KIPYIAPSFG 508

Query:   387 YYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
               E+++         +L  EE+   GI   LVR S G
Sbjct:   509 GCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFG 545

GO:0003824 "catalytic activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IMP

GO:0001887 "selenium compound metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=RCA

GO:0003962 "cystathionine gamma-synthase activity" evidence=ISS;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P13254	MEGL_PSEPU	4, ., 4, ., 1, ., 1, 1	0.375	0.8133	0.9195	yes	no
Q9ZMW7	METB_HELPJ	2, ., 5, ., 1, ., 4, 8	0.3069	0.8022	0.95	yes	no
Q9SGU9	MGL_ARATH	4, ., 4, ., 1, ., 1, 1	0.7659	0.9622	0.9818	yes	no
P50125	CYSD_EMENI	2, ., 5, ., 1, ., 4, 9	0.3052	0.8111	0.8352	yes	no
P0A4K2	METC_LACLA	4, ., 4, ., 1, ., 8	0.3069	0.8133	0.9631	yes	no
A2RM21	METC_LACLM	4, ., 4, ., 1, ., 8	0.3069	0.8133	0.9631	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I8346	SubName- Full=Putative uncharacterized protein; (455 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	MS1	SubName- Full=Putative uncharacterized protein; (766 aa)						•	•		0.904
	MS2	SubName- Full=Putative uncharacterized protein; (766 aa)						•	•		0.904
	MS3	SubName- Full=Putative uncharacterized protein; (766 aa)						•	•		0.903
	gw1.IX.3183.1	selenocysteine lyase/cysteine desulfurase (EC-2.8.1.7) (468 aa)						•	•		0.903
	gw1.XI.706.1	hypothetical protein (323 aa)						•			0.899
	gw1.X.2264.1	hypothetical protein (594 aa)						•			0.899
	gw1.VI.2404.1	hypothetical protein (450 aa)						•			0.899
	gw1.88.24.1	methionyl-tRNA synthetase (EC-6.1.1.10) (801 aa)						•			0.899
	grail3.17125000101	annotation not avaliable (190 aa)						•			0.899
	HMT2	homocysteine s-methyltransferase (EC-2.1.1.10) (338 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
PLN02242	418	PLN02242, PLN02242, methionine gamma-lyase	0.0
cd00614	369	cd00614, CGS_like, CGS_like: Cystathionine gamma-s	1e-129
COG0626	396	COG0626, MetC, Cystathionine beta-lyases/cystathio	1e-100
pfam01053	382	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP	2e-97
COG2873	426	COG2873, MET17, O-acetylhomoserine sulfhydrylase [	1e-78
TIGR01328	391	TIGR01328, met_gam_lyase, methionine gamma-lyase	2e-77
PRK06234	400	PRK06234, PRK06234, methionine gamma-lyase; Provis	2e-75
PRK08133	390	PRK08133, PRK08133, O-succinylhomoserine sulfhydry	1e-73
PRK08249	398	PRK08249, PRK08249, cystathionine gamma-synthase;	7e-73
TIGR01326	418	TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase	8e-71
PRK07503	403	PRK07503, PRK07503, methionine gamma-lyase; Provis	7e-69
TIGR01325	381	TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sul	8e-66
PRK07671	377	PRK07671, PRK07671, cystathionine beta-lyase; Prov	1e-64
PRK08574	385	PRK08574, PRK08574, cystathionine gamma-synthase;	2e-61
PRK08064	390	PRK08064, PRK08064, cystathionine beta-lyase; Prov	1e-56
PRK08134	433	PRK08134, PRK08134, O-acetylhomoserine aminocarbox	6e-56
PRK07811	388	PRK07811, PRK07811, cystathionine gamma-synthase;	6e-56
PRK06767	386	PRK06767, PRK06767, methionine gamma-lyase; Provis	4e-54
PRK06460	376	PRK06460, PRK06460, hypothetical protein; Provisio	2e-53
PRK05939	397	PRK05939, PRK05939, hypothetical protein; Provisio	3e-52
PRK06176	380	PRK06176, PRK06176, cystathionine gamma-synthase/c	3e-51
PRK07504	398	PRK07504, PRK07504, O-succinylhomoserine sulfhydry	6e-51
PRK08248	431	PRK08248, PRK08248, O-acetylhomoserine aminocarbox	7e-51
PRK05968	389	PRK05968, PRK05968, hypothetical protein; Provisio	1e-50
PRK07810	403	PRK07810, PRK07810, O-succinylhomoserine sulfhydry	3e-50
TIGR01329	378	TIGR01329, cysta_beta_ly_E, cystathionine beta-lya	4e-50
TIGR02080	382	TIGR02080, O_succ_thio_ly, O-succinylhomoserine (t	7e-48
PRK07812	436	PRK07812, PRK07812, O-acetylhomoserine aminocarbox	7e-48
PRK06084	425	PRK06084, PRK06084, O-acetylhomoserine aminocarbox	2e-46
PRK06434	384	PRK06434, PRK06434, cystathionine gamma-lyase; Val	2e-45
PRK08045	386	PRK08045, PRK08045, cystathionine gamma-synthase;	9e-45
PRK05994	427	PRK05994, PRK05994, O-acetylhomoserine aminocarbox	2e-42
PRK05613	437	PRK05613, PRK05613, O-acetylhomoserine aminocarbox	7e-41
PRK08247	366	PRK08247, PRK08247, cystathionine gamma-synthase;	7e-40
PRK08776	405	PRK08776, PRK08776, cystathionine gamma-synthase;	1e-36
PRK08861	388	PRK08861, PRK08861, cystathionine gamma-synthase;	4e-36
PRK07049	427	PRK07049, PRK07049, methionine gamma-lyase; Valida	2e-35
PRK07269	364	PRK07269, PRK07269, cystathionine gamma-synthase;	5e-35
PRK06702	432	PRK06702, PRK06702, O-acetylhomoserine aminocarbox	3e-34
PLN02509	464	PLN02509, PLN02509, cystathionine beta-lyase	7e-34
PRK07582	366	PRK07582, PRK07582, cystathionine gamma-lyase; Val	1e-29
TIGR01324	377	TIGR01324, cysta_beta_ly_B, cystathionine beta-lya	1e-27
PRK07050	394	PRK07050, PRK07050, cystathionine beta-lyase; Prov	3e-23
PRK09028	394	PRK09028, PRK09028, cystathionine beta-lyase; Prov	1e-22
PRK05967	395	PRK05967, PRK05967, cystathionine beta-lyase; Prov	1e-19
PRK08114	395	PRK08114, PRK08114, cystathionine beta-lyase; Prov	1e-16
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	2e-07
COG0436	393	COG0436, COG0436, Aspartate/tyrosine/aromatic amin	4e-05
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	1e-04
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	7e-04
PRK07682	378	PRK07682, PRK07682, hypothetical protein; Validate	0.002
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	0.003

>gnl|CDD|215134 PLN02242, PLN02242, methionine gamma-lyase

 Score =  827 bits (2137), Expect = 0.0
 Identities = 353/419 (84%), Positives = 381/419 (90%), Gaps = 4/419 (0%)

Query: 27  TKKSMLSTAAA-WEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELG 85
           ++K   S A +  EDPAAALASARHEFGEHGGVNMSIEASATFTVMEP+TMRRMF+GELG
Sbjct: 3   SEKEKKSPAESKEEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELG 62

Query: 86  PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVV 145
           PDRDF+IYSRHFNPTVLNL RQMAALEGTEAAYCTAS   GMSAISSVL+QLCSSGGHVV
Sbjct: 63  PDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTAS---GMSAISSVLLQLCSSGGHVV 119

Query: 146 AARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV 205
           A+ TLYGGTHALL HF PR CNITTTFVDI+D E V  A+V G+TKVLYFESISNPTL V
Sbjct: 120 ASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLYFESISNPTLTV 179

Query: 206 ANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP 265
           A+IPEL+R+AH+KGVTVVVDNTF+P+VLSPARLGADVVVHSISKFISGGADIIAGAVCGP
Sbjct: 180 ADIPELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGP 239

Query: 266 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL 325
           A LVNSMMDLH GALMLLGPTMNPKVAFELSER+PHL LRMKEHC RA+ +A+RMK+LGL
Sbjct: 240 AELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGL 299

Query: 326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL 385
           KV+YPGLEDHP H LLKSMANK YGFGGLLCLDM+TEE+ANRLM YLQN  QFGFMAVSL
Sbjct: 300 KVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSL 359

Query: 386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444
           GYYETLMSCSGSSTSSEL+ EEKA AGIS GLVRMSVGY GTL+QRWSQFEKALS M+ 
Sbjct: 360 GYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTGTLEQRWSQFEKALSAMKL 418

Length = 418

>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

 Score =  378 bits (973), Expect = e-129
 Identities = 155/389 (39%), Positives = 220/389 (56%), Gaps = 24/389 (6%)

Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G V   I  ++TF    P     +FA         +IYSR  NPTV  L +++AALEG E
Sbjct: 1   GAVAPPIYQTSTFVFPSPAEAADLFALR----EGGYIYSRIGNPTVDALEKKLAALEGGE 56

Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
           AA   +S   GM+AIS+VL+ L  +G HVVA+  LYGGT+ L     P+   I  TFVD 
Sbjct: 57  AALAFSS---GMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLG-IEVTFVDP 112

Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
            D E + +AI +  TK++Y ES +NPTL V +I  ++ LAH+ G  +VVDNTF +P +  
Sbjct: 113 DDPEALEAAI-KPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQR 171

Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
           P  LGAD+VVHS +K+I G +D+IAG V G    +   +   + A   LG  ++P  A+ 
Sbjct: 172 PLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA---LGTILSPFDAWL 228

Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
           L   +  L LRM+ H   AL  A  ++K     +V YPGL  HP HEL K   +   G+G
Sbjct: 229 LLRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS---GYG 285

Query: 353 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 411
           G+   +++   E A + +N L    +   +AVSLG  E+L+    S T S+L  EE+A A
Sbjct: 286 GVFSFELKGGLEAAKKFLNAL----KLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAA 341

Query: 412 GISAGLVRMSVGYLGTLDQRWSQFEKALS 440
           GI+ GLVR+SVG +  ++   +  E+AL 
Sbjct: 342 GITPGLVRLSVG-IEDVEDLIADLEQALK 369

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. Length = 369

>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

 Score =  304 bits (780), Expect = e-100
 Identities = 149/419 (35%), Positives = 216/419 (51%), Gaps = 33/419 (7%)

Query: 28  KKSMLSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPD 87
            K  L+T            + R      G VN  I  ++TF           FAGE G  
Sbjct: 4   AKLSLTTRLVH--------AGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGEEGG- 54

Query: 88  RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA 147
              + YSR  NPT   L   +A LEG E A+  +S   GM+AIS+ L+ L  +G HV+  
Sbjct: 55  ---YDYSRTGNPTRDALEEALAELEGGEDAFAFSS---GMAAISTALLALLKAGDHVLLP 108

Query: 148 RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 207
             LYGGT+ L      +   +  TFVD  D E + +AI +  TK+++ E+ SNP L V +
Sbjct: 109 DDLYGGTYRLFEKILQKF-GVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPD 167

Query: 208 IPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 266
           IP ++RLA   G  VVVDNTF +P++  P  LGAD+VVHS +K++ G +D++ G V  P 
Sbjct: 168 IPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTP- 226

Query: 267 NLVNSMMD--LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 324
              N  +   L        G  ++P  A+ L   +  L LRM+ H   AL  A  +    
Sbjct: 227 ---NEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHP 283

Query: 325 L--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 382
              KV YPGL  HP HEL K       G+GGL   +++ EE A + ++ L+ +     +A
Sbjct: 284 KVKKVYYPGLPSHPGHELAKRQMT---GYGGLFSFELKNEEAAKKFLDSLKLFK----LA 336

Query: 383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441
            SLG  E+L+S   + T + +  EE+A AGI+ GLVR+SVG L  ++   +  E+AL++
Sbjct: 337 ESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG-LEDVEDLIADLEQALAK 394

Length = 396

>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme

 Score =  297 bits (762), Expect = 2e-97
 Identities = 144/376 (38%), Positives = 212/376 (56%), Gaps = 31/376 (8%)

Query: 55  HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
            G V + I  ++T+     +T+  +FAGE G     + YSR  NPT   L  ++AALEG 
Sbjct: 15  TGAVVVPIYLTSTYVF---DTVEALFAGEHGG----YDYSRSGNPTRDALEERIAALEGG 67

Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174
           EAA   +S   GM+AI + L+ L  +G HVVA   LYGGT+ L     PR   I  TFVD
Sbjct: 68  EAALAFSS---GMAAIFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFG-IEVTFVD 123

Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL 233
            SD + + +AI +  TK ++ E+ +NP L V +I  ++++A   G  VVVDNTF SP + 
Sbjct: 124 PSDLDALEAAI-KPNTKAVFLETPTNPLLKVVDIEAIAKIAKKHGALVVVDNTFASPYLQ 182

Query: 234 SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML---LGPTMNPK 290
            P  LGAD+VVHS +K+I G +D++ G V      VN   +L +    L    G  ++P 
Sbjct: 183 RPLELGADIVVHSATKYIGGHSDVVGGVVV-----VNGREELAKRLRFLQNATGAVLSPF 237

Query: 291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKE 348
            A+ L   +  LGLRM+ H   AL  A  +++     KV YPGL  HP HEL K   +  
Sbjct: 238 DAWLLLRGLKTLGLRMERHQENALKLAEFLEEHPKVEKVYYPGLPSHPGHELAKKQMS-- 295

Query: 349 YGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 407
            GFGG+L  +++   E A++ ++ L+ ++    +A SLG  E+L+S   + T + +  EE
Sbjct: 296 -GFGGMLSFELKGGLEAASKFLDNLKLFS----LAESLGGVESLISHPATMTHASIPPEE 350

Query: 408 KALAGISAGLVRMSVG 423
           +  AGI+ GL+R+SVG
Sbjct: 351 REAAGITDGLIRLSVG 366

This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Length = 382

>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

 Score =  250 bits (640), Expect = 1e-78
 Identities = 126/412 (30%), Positives = 195/412 (47%), Gaps = 54/412 (13%)

Query: 48  ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQ 107
           A  E    G   + I  + ++   + +    +F  +        IY+R  NPT   L  +
Sbjct: 15  AGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLK----EPGNIYTRIMNPTTDVLEER 70

Query: 108 MAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN 167
           +AALEG  AA   AS   G +AI+  ++ L  +G ++V++  LYGGT+ L +H   R   
Sbjct: 71  IAALEGGVAALAVAS---GQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL-G 126

Query: 168 ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 227
           I   FVD  D E   +AI    TK ++ E+I NP L V +I  ++ +AH  GV ++VDNT
Sbjct: 127 IEVRFVDPDDPENFEAAI-DENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNT 185

Query: 228 F-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV-----------------CGPAN-- 267
           F +P +  P   GAD+VVHS +K+I G    I G +                   P    
Sbjct: 186 FATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSY 245

Query: 268 --------LVNSMMDLHQGALML--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA 317
                     N+   +     +L  LG T++P  AF L + +  L LRM+ HC  AL  A
Sbjct: 246 HGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVA 305

Query: 318 RRMK---KLGLKVLYPGLEDHPHHELLKSMANKEY--GFGGLLCLDMET-EEKANRLMNY 371
             ++   K+   V YPGL  HP+H L    A K    G G +L   ++   E   + ++ 
Sbjct: 306 EFLENHPKVA-WVNYPGLASHPYHAL----AKKYLPKGAGAVLTFGVKGGYEAGKKFIDA 360

Query: 372 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           L+          ++G   +L+    S+T  +L+ EE+A AG++  L+R+SVG
Sbjct: 361 LK-LFS---HLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVG 408

Length = 426

>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase

 Score =  246 bits (629), Expect = 2e-77
 Identities = 138/393 (35%), Positives = 217/393 (55%), Gaps = 23/393 (5%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           + G +   I  ++TF     E     FAG+       +IYSR  NPTV NL  ++A LEG
Sbjct: 18  QFGALTPPIYQTSTFVFDSCEQGGNRFAGQ----ESGYIYSRLGNPTVSNLEGRIAFLEG 73

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
           TEAA  T+S   GM AI++ L+ +  +G H+++   LYG T ALL H   +   I   F+
Sbjct: 74  TEAAVATSS---GMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKF-GIQVDFI 129

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           +++  E V + I +  TK++YFE+ +NPT+ + ++  + R AH +GV V+VDNTF +P++
Sbjct: 130 NMAIPEEVKAHI-KDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPML 188

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
            +P  LG DVVVHS +K+I G  D++AG +CG A L+  +  +    +   G  ++P  A
Sbjct: 189 TNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMT--GSVISPFDA 246

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           + +   +  L +RMK H   A+  A  +K      KV YPG EDHP H++          
Sbjct: 247 WLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRM--- 303

Query: 351 FGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 409
            GG++  +++     A +L+N L+       +AVSLG  ETL+    S T + +  EE+ 
Sbjct: 304 GGGMITFELKGGFAGAKKLLNNLKLIR----LAVSLGDAETLIQHPASMTHAVVPKEERE 359

Query: 410 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
            AGI+ G++R+SVG L   D   +  ++AL  +
Sbjct: 360 AAGITDGMIRLSVG-LEDADDLIADLKQALDAL 391

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine [Energy metabolism, Amino acids and amines]. Length = 391

>gnl|CDD|168478 PRK06234, PRK06234, methionine gamma-lyase; Provisional

 Score =  241 bits (616), Expect = 2e-75
 Identities = 152/395 (38%), Positives = 216/395 (54%), Gaps = 25/395 (6%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           + G +   I  ++TF     E   R FAGE       +IYSR  NPT   +  ++A LEG
Sbjct: 23  QFGSLATPIYQTSTFIFDSAEQGGRRFAGE----ESGYIYSRLGNPTSTEVENKLALLEG 78

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            EAA   AS   GM AISS L     +G HVVA+ TLYG T ALL H   R   +  TFV
Sbjct: 79  GEAAVVAAS---GMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRY-GVEVTFV 134

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTF-SP 230
           D S+ E V +A+ +  TKV+Y E+ +NPTL V +I  +S +AH  +K   V VDNTF +P
Sbjct: 135 DTSNLEEVRNAL-KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193

Query: 231 LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 290
            +  P +LGADVVVHS +K+++G  D+IAG V G    +N +     G   + G  + P 
Sbjct: 194 YIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVK--LFGIKDMTGSVIGPF 251

Query: 291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKE 348
            AF +   +  L +RM++HC  A+  A+ ++      KV YPGLE   ++EL K   +  
Sbjct: 252 EAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSL- 310

Query: 349 YGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 407
              G ++  +++   E+   +MN ++       +AVSLG  ETL+    S T S   AEE
Sbjct: 311 --PGAMISFELKGGVEEGKVVMNNVK----LATLAVSLGDAETLIQHPASMTHSPYTAEE 364

Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
           +  AGIS GLVR+SVG L  +D   +  ++AL  +
Sbjct: 365 RKEAGISDGLVRLSVG-LEDVDDIIADLKQALDLI 398

Length = 400

>gnl|CDD|181244 PRK08133, PRK08133, O-succinylhomoserine sulfhydrylase; Validated

 Score =  236 bits (603), Expect = 1e-73
 Identities = 135/381 (35%), Positives = 210/381 (55%), Gaps = 31/381 (8%)

Query: 49  RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQM 108
           R  FGEH     ++  +++F           FAGE        IYSR  NPTV     ++
Sbjct: 18  RSPFGEHS---EALFLTSSFVFESAAEAAARFAGE----EPGNIYSRFTNPTVTMFQERL 70

Query: 109 AALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI 168
           AALEG EA   TAS   GM+AI +V+M L  +G HVV++R+L+G T +L    F R   I
Sbjct: 71  AALEGAEACVATAS---GMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GI 126

Query: 169 TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 228
            TTFVD++D +   +A V+  TK+ + E+ SNP   +A+I  L+ +AH  G  +VVDN F
Sbjct: 127 ETTFVDLTDLDAWRAA-VRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCF 185

Query: 229 -SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM 287
            +P +  P +LGADVV+HS +K++ G   ++ GAV G   L+  +     G L   GPT+
Sbjct: 186 CTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVF----GFLRTAGPTL 241

Query: 288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMA 345
           +P  A+   + +  L LRM+ H   AL  A  ++      +V YPGL  HP HEL K   
Sbjct: 242 SPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKR-- 299

Query: 346 NKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVS--LGYYETLMSCSGSSTSSE 402
            ++ G G ++  +++   E A R+++  +       ++++  LG  +T ++   ++T   
Sbjct: 300 -QQKGGGAIVSFEVKGGREAAWRVIDATR------LISITANLGDTKTTITHPATTTHGR 352

Query: 403 LNAEEKALAGISAGLVRMSVG 423
           L+ E +A AGI+ GL+R++VG
Sbjct: 353 LSPEARAAAGITEGLIRVAVG 373

Length = 390

>gnl|CDD|236202 PRK08249, PRK08249, cystathionine gamma-synthase; Provisional

 Score =  234 bits (599), Expect = 7e-73
 Identities = 134/418 (32%), Positives = 213/418 (50%), Gaps = 33/418 (7%)

Query: 32  LSTAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFF 91
           + T A W        +   E+  +G   + +  S  +     + +   +   LG  +   
Sbjct: 9   VGTKAVW--------AGEKEYLPYGATQVPVVLSVAYGY---DDIDEWYDVALG-KKPGH 56

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           IYSR+ NPTV     ++  LEG EAA   ++   GM+AIS+ L      G  VV+ +  Y
Sbjct: 57  IYSRNTNPTVQAFEEKVRILEGAEAATAFST---GMAAISNTLYTFLKPGDRVVSIKDTY 113

Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           GGT+ + T F PR   +  T  +  DHE + + I +G   +LY E+ +NPTL + +I  L
Sbjct: 114 GGTNKIFTEFLPRM-GVDVTLCETGDHEQIEAEIAKG-CDLLYLETPTNPTLKIVDIERL 171

Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 270
           +  A   G  VVVDNTF +P+  +P  LGAD+V+HS +KF+SG AD + G VCG   L+ 
Sbjct: 172 AAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELME 231

Query: 271 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVL 328
            +    +    + G TM+P  A+ +   +  L LR+++    A+  A+ ++       V 
Sbjct: 232 QVYHYRE----INGATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVY 287

Query: 329 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGY 387
           YPGLE HP+HE+ K+      GFGG+L   ++   +   RL+  L    ++   A +LG 
Sbjct: 288 YPGLETHPNHEIAKAQMR---GFGGILSFVLKGGMDTVKRLLPKL----RYAHRAANLGA 340

Query: 388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS 445
            ET+   + +++  E   EE+A  GI  GLVR+SVG   T D   +  E+A + ++  
Sbjct: 341 VETIYGPARTTSHVENTLEERAALGIPEGLVRISVGIEDTEDL-IADLEQAFAHLESE 397

Length = 398

>gnl|CDD|130393 TIGR01326, OAH_OAS_sulfhy, OAH/OAS sulfhydrylase

 Score =  229 bits (586), Expect = 8e-71
 Identities = 126/402 (31%), Positives = 192/402 (47%), Gaps = 49/402 (12%)

Query: 55  HGGVNMSIEASATFTVMEPETMRRMFA-GELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
            G   + I  + ++     E    +F   E G      IYSR  NPT   L +++AALEG
Sbjct: 17  TGSRAVPIYQTTSYVFDSTEHAAALFGLQEAGN-----IYSRLMNPTTDVLEQRIAALEG 71

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
             AA   AS   G +AI+  ++ L  +G ++V++  LYGGT+ L  H   R   I   FV
Sbjct: 72  GVAALAVAS---GQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRL-GIEVRFV 127

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D  D E    AI +  TK ++ E+I NP + V +I  ++ +AH  GV ++VDNTF +P +
Sbjct: 128 DPDDPEEFEKAIDE-NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL 186

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAV----------------CGPA---------- 266
             P   GAD+VVHS +K+I G    I G +                  P           
Sbjct: 187 CRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTE 246

Query: 267 NLVNSMMDLHQGALML--LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG 324
              N    +     +L  LG  ++P  AF L + +  L LRM+ H   AL  A  ++   
Sbjct: 247 TFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHP 306

Query: 325 --LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFM 381
               V YPGL  HPHH L K    K  GFG +L  +++   E   + ++ L+  +     
Sbjct: 307 KVAWVNYPGLASHPHHALAKKYLPK--GFGAVLSFEIKGGREAGKKFIDALKLASH---- 360

Query: 382 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
             ++G  ++L+    S+T  +L+ EE+  AG++ GL+R+SVG
Sbjct: 361 LANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTPGLIRLSVG 402

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family]. Length = 418

>gnl|CDD|181005 PRK07503, PRK07503, methionine gamma-lyase; Provisional

 Score =  224 bits (572), Expect = 7e-69
 Identities = 139/375 (37%), Positives = 194/375 (51%), Gaps = 24/375 (6%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             G +   +  +ATF     E     FAGE     +   YSR  NPT+  L ++MA+LEG
Sbjct: 24  HGGALVPPVYLTATFAFPTAEYGAECFAGE----EEGHFYSRISNPTLALLEQRMASLEG 79

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            EAA   AS   GM AI++ L  L   G  V+  +TLYG T A L H       +T   V
Sbjct: 80  GEAAVALAS---GMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEF-GVTVRHV 135

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D++D   + +AI   +T+++YFE+ +NP + + +I  ++ +AH  G  VVVDNT+ +P +
Sbjct: 136 DLTDPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYL 194

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P  LGAD+VVHS +K++ G  DI AG V G   L + +    +G   + G  M+P  A
Sbjct: 195 QRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIR--LEGLKDMTGAVMSPFDA 252

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLK-SMANKEY 349
           F L   +  L LRM  HC  A   A  + +      V YPGL     H L +  MA    
Sbjct: 253 FLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMAL--- 309

Query: 350 GFGGLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 408
             GG++  +++    A R  MN LQ +A+    AVSLG  E+L     S T S    EE+
Sbjct: 310 -PGGMIAFELKGGIAAGRRFMNALQLFAR----AVSLGDAESLAQHPASMTHSTYTPEER 364

Query: 409 ALAGISAGLVRMSVG 423
           A  GIS GLVR+SVG
Sbjct: 365 AEHGISEGLVRLSVG 379

Length = 403

>gnl|CDD|188131 TIGR01325, O_suc_HS_sulf, O-succinylhomoserine sulfhydrylase

 Score =  215 bits (549), Expect = 8e-66
 Identities = 128/380 (33%), Positives = 199/380 (52%), Gaps = 27/380 (7%)

Query: 48  ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQ 107
            R  F E      ++  ++ +         + FAGEL      F+YSR+ NPTV     +
Sbjct: 10  LRSGFEET---AEALYLTSGYVYDSAAVAAKRFAGEL----PGFVYSRYGNPTVSVFEER 62

Query: 108 MAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN 167
           +A LEG EAA  TAS   GM+AI + LM L  +G HVVA+R+L+G    + +   PR   
Sbjct: 63  LALLEGAEAAVATAS---GMAAIFAALMALLGAGDHVVASRSLFGSCFVVCSEILPRF-G 118

Query: 168 ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT 227
           + T FVD +D     +A ++  TK ++ E+ SNP   + +I  ++ LAH  G  VVVDN 
Sbjct: 119 VQTVFVDGTDLSAWEAA-LKPNTKAVFVETPSNPLQELVDIAAVAELAHAAGAKVVVDNV 177

Query: 228 F-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT 286
           F +PL+  P +LGADVVV+S +K I G   ++ GA+ G       M +  Q  L   GP 
Sbjct: 178 FATPLLQQPLKLGADVVVYSATKHIDGQGRVLGGAILGSEEY---MDEPVQKLLRHTGPA 234

Query: 287 MNPKVAFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKS 343
           M+P  A+ L + +  L +R++     AL  A        +   V YPGL  HP HEL K 
Sbjct: 235 MSPFNAWVLLKGLETLAIRVQHQNASALAIAEWLNGHPSVQ-WVYYPGLPSHPQHELAKR 293

Query: 344 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 403
             +   G G ++  D++  + A ++++ ++       ++ +LG  ++ ++   ++T   +
Sbjct: 294 QMS---GGGTVVTFDLDCRQAAFKVLDAMRLVD----ISNNLGDAKSTITHPATTTHRRM 346

Query: 404 NAEEKALAGISAGLVRMSVG 423
             EE+A AGI  GLVR+SVG
Sbjct: 347 GPEERAAAGIGDGLVRLSVG 366

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis [Amino acid biosynthesis, Aspartate family]. Length = 381

>gnl|CDD|181076 PRK07671, PRK07671, cystathionine beta-lyase; Provisional

 Score =  212 bits (541), Expect = 1e-64
 Identities = 134/341 (39%), Positives = 196/341 (57%), Gaps = 29/341 (8%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
           + YSR  NPT   L   +A LEG  A +   S   GM+AI++V+M L SSG HV+    +
Sbjct: 42  YEYSRTGNPTRAALEELIAVLEGGHAGFAFGS---GMAAITAVMM-LFSSGDHVILTDDV 97

Query: 151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
           YGGT+ ++T    R   I  TFVD S+ E V  AI +  TK +Y E+ +NP L + +I +
Sbjct: 98  YGGTYRVMTKVLNRF-GIEHTFVDTSNLEEVEEAI-RPNTKAIYVETPTNPLLKITDIKK 155

Query: 211 LSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 269
           +S +A +KG+  +VDNTF  P   SP  LGAD+V+HS +K++ G +D++AG V     +V
Sbjct: 156 ISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLV-----VV 210

Query: 270 NSMM---DLH--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH--RALIFARRMKK 322
           NS     DLH  Q +    G  + P+ ++ L   +  LG+RM+EH    RA+        
Sbjct: 211 NSPELAEDLHFVQNS---TGGILGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHP 267

Query: 323 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 382
              KV YPGL  HP+HEL K  AN   GFGG++  D+ +EE AN+++  LQ +     +A
Sbjct: 268 AVNKVYYPGLPSHPNHELAKEQAN---GFGGMISFDVGSEETANKVLERLQYFT----LA 320

Query: 383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
            SLG  E+L+S     T + + A+ +   GI+ GL+R+SVG
Sbjct: 321 ESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVG 361

Length = 377

>gnl|CDD|236298 PRK08574, PRK08574, cystathionine gamma-synthase; Provisional

 Score =  204 bits (520), Expect = 2e-61
 Identities = 113/352 (32%), Positives = 178/352 (50%), Gaps = 22/352 (6%)

Query: 79  MFAGELGP-DRDFFI-YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQ 136
              GE  P DR F + YSR  NPT+  L   +A LEG   A    S   GM+AIS++   
Sbjct: 31  RQEGEAYPSDRGFDLKYSREENPTLRPLEEALAKLEGGVDALAFNS---GMAAISTLFFS 87

Query: 137 LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE 196
           L  +G  VV     YG T  LL         +   +      E +  AI +GRTK+++ E
Sbjct: 88  LLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY---PSTEDIIEAIKEGRTKLVFIE 144

Query: 197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGA 255
           +++NPTL V ++PE+++ A + G  +VVDNTF +PL+  P R GAD VVHS++K+I+G  
Sbjct: 145 TMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHN 204

Query: 256 DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRAL 314
           D++ G     +     + +L +     LG  M P  A+ L  R +  L +R +  C  A+
Sbjct: 205 DVVGGVAVAWSGEF--LEELWEWRRR-LGTIMQPFEAY-LVLRGLKTLEVRFERQCRNAM 260

Query: 315 IFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM-ETEEKANRLMNY 371
             A  + +     +V YPGL   P+H + K +  K+  +GG++   +    +   + +  
Sbjct: 261 AIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDL-YGGVVSFRVKGGRDAVLKFLRS 319

Query: 372 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           L    +    + SLG  E+L +    S +S +  E++   GI+  LVR+SVG
Sbjct: 320 L----KLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVG 367

Length = 385

>gnl|CDD|236146 PRK08064, PRK08064, cystathionine beta-lyase; Provisional

 Score =  191 bits (488), Expect = 1e-56
 Identities = 124/392 (31%), Positives = 200/392 (51%), Gaps = 34/392 (8%)

Query: 53  GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
            + G VN+ I  ++TF   + +T  +            + YSR  NPT   L   +A LE
Sbjct: 20  KQTGAVNVPIYHASTFHQFDFDTFGK------------YDYSRSGNPTREALEDIIAELE 67

Query: 113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
           G    +  AS   GM+AIS+  + L S G HV+ +  +YGGT+ ++T    R   I  TF
Sbjct: 68  GGTKGFAFAS---GMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRF-GIEHTF 122

Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
           VD+++ E V   I +  TK+ Y E+ SNP L V +I  + +LA   G    VDNTF +PL
Sbjct: 123 VDMTNLEEVAQNI-KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPL 181

Query: 232 VLSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPK 290
           +  P  LGADVV+HS +KF++G +D++AG AV     L   +  L        G  +  +
Sbjct: 182 LQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNS----FGAVLGVQ 237

Query: 291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKE 348
             + +   +  L +R++     A   A  +++      V YPGL+ H   ++ +S A   
Sbjct: 238 DCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQAT-- 295

Query: 349 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 408
              G +L   +++EE   + ++++    +    AVSLG  E+++S     + + +  EE+
Sbjct: 296 -SAGAVLSFTLQSEEAVRQFVSHV----KLPVFAVSLGAVESILSYPAKMSHAAMPKEER 350

Query: 409 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440
              GI+ GL+R+SVG L  +D   + FE+ALS
Sbjct: 351 DERGITDGLLRLSVG-LENVDDLIADFEQALS 381

Length = 390

>gnl|CDD|236159 PRK08134, PRK08134, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  191 bits (486), Expect = 6e-56
 Identities = 115/364 (31%), Positives = 182/364 (50%), Gaps = 42/364 (11%)

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           +YSR  NPTV  L  ++AALEG   A  TAS   G +A+   +  L  +G H+VA+  LY
Sbjct: 57  VYSRISNPTVAVLEERVAALEGGVGAIATAS---GQAALHLAIATLMGAGSHIVASSALY 113

Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           GG+H LL +   R   I TTFV   D +   +AI +  T++L+ E++ NP L V +IP +
Sbjct: 114 GGSHNLLHYTLRRF-GIETTFVKPGDIDGWRAAI-RPNTRLLFGETLGNPGLEVLDIPTV 171

Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV-------- 262
           + +AH+ GV ++VD+TF +P +L P   GAD+V HS +KF+ G    I G +        
Sbjct: 172 AAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDW 231

Query: 263 ---------CGPANLVNSMMDLHQ---GALML---------LGPTMNPKVAFELSERIPH 301
                      P    + M+   +    A +L          G  ++P  A++L + I  
Sbjct: 232 EASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIET 291

Query: 302 LGLRMKEHCH--RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 359
           L LRM+ H    R ++          +V +P LE HP H L K +  +  G G +   D+
Sbjct: 292 LPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPR--GAGSVFSFDL 349

Query: 360 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 419
           +    A R   ++++   F  +A ++G   +L+    S+T   ++A   A AGI  G +R
Sbjct: 350 KGGRAAGR--KFIESLKLFSHLA-NVGDARSLVIHPASTTHFRMDAAALAAAGIGEGTIR 406

Query: 420 MSVG 423
           +S+G
Sbjct: 407 LSIG 410

Length = 433

>gnl|CDD|236104 PRK07811, PRK07811, cystathionine gamma-synthase; Provisional

 Score =  189 bits (483), Expect = 6e-56
 Identities = 126/377 (33%), Positives = 178/377 (47%), Gaps = 43/377 (11%)

Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G VN  I AS+TF       +R  +            Y+R  NPT   L  Q+AALEG  
Sbjct: 29  GAVNPPIYASSTFAQDGVGGLRGGYE-----------YARTGNPTRTALEEQLAALEGGA 77

Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
                +S   GM+A   +L  +   G H+V     YGGT  L+   F R   +  T VD+
Sbjct: 78  YGRAFSS---GMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTR-WGVEYTPVDL 133

Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
           SD + V +AI   RTK+++ E+ +NP L++ +I  L+ LAHD G  VVVDNTF SP +  
Sbjct: 134 SDLDAVRAAI-TPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQ 192

Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
           P  LGADVVVHS +K+I G +D++ GA+      ++      Q      G    P  A+ 
Sbjct: 193 PLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNG---AGAVPGPFDAYL 249

Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHEL-LKSMANKEYGF 351
               +  L +RM  H   A   A  +        VLYPGL  HP HE+  + M     GF
Sbjct: 250 TLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMR----GF 305

Query: 352 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG-----SSTSSELNAE 406
           GG++ + +   E+A R         +   +A SLG  E+L+         S+  S+L   
Sbjct: 306 GGMVSVRLAGGEEAAR---DFCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQLE-- 360

Query: 407 EKALAGISAGLVRMSVG 423
                 +   LVR+SVG
Sbjct: 361 ------VPDDLVRLSVG 371

Length = 388

>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional

 Score =  185 bits (470), Expect = 4e-54
 Identities = 119/395 (30%), Positives = 188/395 (47%), Gaps = 31/395 (7%)

Query: 50  HEFGEH-GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQM 108
           +   EH G +   +  ++TFT    +     FAG        +IYSR  NPTV     +M
Sbjct: 15  YTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGV----DPSYIYSRLGNPTVKLFEERM 70

Query: 109 AALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI 168
           A LEG E A    S   GM+AIS+ L+    +G H++ +  LYG T+  L         I
Sbjct: 71  AVLEGGEEALAFGS---GMAAISATLIGFLKAGDHIICSNGLYGCTYGFLE-VLEEKFMI 126

Query: 169 TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 228
           T +F D+     + + I +  TK+++ E+  NPT+ + ++ ++ R+A   G+ V+VDNTF
Sbjct: 127 THSFCDMETEADIENKI-RPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTF 185

Query: 229 -SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM 287
            SP +  P  LG D VVHS +K+I G  D++AG        +   +   +     +G  M
Sbjct: 186 CSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKD---IGGIM 242

Query: 288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLED--HPHHELLKSMA 345
            P  A+ L   +  L +RM  HC  A      +K       +  +E   +P  EL     
Sbjct: 243 APFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLK------NHDAVEGVWYPEGELASRQM 296

Query: 346 NKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 404
            +    GG++   ++  +E+    +N L     F  +AVSLG  ETL+    + T + + 
Sbjct: 297 KRG---GGVISFSIKGGKEETQAFINDL----HFITIAVSLGDTETLIQHPATMTHAAIP 349

Query: 405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
           AE +   GI   L+R+SVG L + +   S  E+AL
Sbjct: 350 AELRQEMGIYDNLIRLSVG-LESWEDIVSDLEQAL 383

Length = 386

>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional

 Score =  182 bits (464), Expect = 2e-53
 Identities = 108/343 (31%), Positives = 182/343 (53%), Gaps = 22/343 (6%)

Query: 86  PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVV 145
           P+ + + YSR  NPTVL L++++  LE  E     +S   GM AIS+  + L   G  V+
Sbjct: 32  PEGEKYRYSREANPTVLELTKKIVELENAEMGVAFSS---GMGAISTTALALLKPGNSVL 88

Query: 146 AARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV 205
             R ++G ++   T +  +   +     +     ++  A  + R  V++ E+I+NP L V
Sbjct: 89  VHRDMFGRSYRFFTDYL-KNWGVNVDASNPGSDNIIEKAKSK-RYDVVFVENITNPLLRV 146

Query: 206 ANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCG 264
            +I ELS++  + G  ++VD TFS P+   P  LGAD+VVHS SKF++G  D+IAG   G
Sbjct: 147 VDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAG 206

Query: 265 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKL 323
              L+N +  + +     LG +++P  A+ L+ R I  L +RM      A   A  ++  
Sbjct: 207 YGKLLNVIDQMRRT----LGTSLDPHAAY-LTLRGIKTLKIRMDVINRNAEQIAEFLEGH 261

Query: 324 G--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGF 380
              +KV YPGL+ H  +E+ + +     GFGG+L  ++   +E A ++M  L    +   
Sbjct: 262 PKVVKVYYPGLKSHVDYEIARRVLK---GFGGVLSFEVNGGQESALKVMKSL----KLII 314

Query: 381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
            A +LG   +++S   + +   L+ EE+ + GI+  L+R+SVG
Sbjct: 315 PAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVG 357

Length = 376

>gnl|CDD|235650 PRK05939, PRK05939, hypothetical protein; Provisional

 Score =  180 bits (458), Expect = 3e-52
 Identities = 116/409 (28%), Positives = 197/409 (48%), Gaps = 41/409 (10%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           EHG V+  I  S T+   +   +  +F G+       F Y+R   PT   L  ++  +EG
Sbjct: 6   EHGAVHKPIHTSVTYGYEDARDLIDVFQGKKPG----FTYARQGTPTTAALEAKITKMEG 61

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
                C A+   GM+AI++V + L  +G H+V+++ L+G T++L      R   +  T V
Sbjct: 62  GVGTVCFAT---GMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTL--RGLGVEVTMV 116

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D +D + V +AI +  T++++ E+I+NP   VA++  +  L  ++G+  VVDNT  SP +
Sbjct: 117 DATDVQNVAAAI-RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL 175

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGP--------ANLVNS----------MMD 274
             P  +GA +V++S+SK+I+G  + + GAV            N+  +          +  
Sbjct: 176 FRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQ 235

Query: 275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM---KKLGLKVLYPG 331
           + +  L  +G T++ + A  ++     L LR+   C  AL  A+ +    K+  +V YPG
Sbjct: 236 IRKKGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVA-RVYYPG 294

Query: 332 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL 391
           L  HP H     +      +GGLL  ++         +N L    +    A  LG   TL
Sbjct: 295 LASHPQHARATELFR---HYGGLLSFELADGIDCFDFLNRL----KLVIKATHLGDTRTL 347

Query: 392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440
           +     +   E+ AE +A  GI+  L+R+SVG     D   + FE+AL 
Sbjct: 348 VIPVAPTIYYEMGAERRASMGIADSLIRVSVGIEDEADLI-ADFEQALD 395

Length = 397

>gnl|CDD|180443 PRK06176, PRK06176, cystathionine gamma-synthase/cystathionine beta-lyase; Validated

 Score =  177 bits (450), Expect = 3e-51
 Identities = 116/334 (34%), Positives = 176/334 (52%), Gaps = 19/334 (5%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           YSR  NPT   L   +A LEG    +  AS  AG+ A+ S+      SG HV+    +YG
Sbjct: 44  YSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFSLF----QSGDHVLLGDDVYG 99

Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
           GT  L      +   ++ T +D SD   +  AI +  TK LY E+ SNP L + ++ + +
Sbjct: 100 GTFRLFDKVLVKN-GLSCTIIDTSDLSQIKKAI-KPNTKALYLETPSNPLLKITDLAQCA 157

Query: 213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 271
            +A D G+  +VDNTF +P   +P  LGAD+VVHS +K++ G +D++AG V      +  
Sbjct: 158 SVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQ 217

Query: 272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLY 329
            +   Q A   +G  + P+ ++ L   I  LGLRM+ H   AL  A  ++K     KV Y
Sbjct: 218 EIAFFQNA---IGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYY 274

Query: 330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 389
           PGL  HP+HEL K       GF G+L   ++ + +A   + ++++   F  +  SLG  E
Sbjct: 275 PGLPTHPNHELAKKQMR---GFSGMLSFTLKNDSEA---VAFVESLKLF-ILGESLGGVE 327

Query: 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           +L+      T + +  E++  AGI  GLVR+SVG
Sbjct: 328 SLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG 361

Length = 380

>gnl|CDD|168979 PRK07504, PRK07504, O-succinylhomoserine sulfhydrylase; Reviewed

 Score =  176 bits (449), Expect = 6e-51
 Identities = 129/418 (30%), Positives = 204/418 (48%), Gaps = 33/418 (7%)

Query: 30  SMLSTAAAWEDPAAAL---ASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGP 86
                A  W  PA  L    + R +FGE    + ++  +  F     E     F GE   
Sbjct: 1   MTTEMARKWR-PATRLVHSGTLRSQFGE---TSEALFLTQGFVYDTAEAAEARFKGE--- 53

Query: 87  DRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVA 146
               FIYSR+ NPTV    ++M ALEG E A  TAS   GM+A+++ ++    +G HVVA
Sbjct: 54  -DPGFIYSRYSNPTVDMFEKRMCALEGAEDARATAS---GMAAVTAAILCQVKAGDHVVA 109

Query: 147 ARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA 206
           AR L+G    ++    PR   I +T VD  D +    A V+  TKV + ES +NPTL V 
Sbjct: 110 ARALFGSCRYVVETLLPRY-GIESTLVDGLDLDNWEKA-VRPNTKVFFLESPTNPTLEVI 167

Query: 207 NIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP 265
           +I  ++++A+  G  +VVDN F +PL   P  LGA +VV+S +K I G    + G V   
Sbjct: 168 DIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSD 227

Query: 266 ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG- 324
              +   +   Q      GP+++P  A+ L + +  L +R+++    A   A  +     
Sbjct: 228 KAWIEEHL---QDYFRHTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPK 284

Query: 325 -LKVLYPGLEDHPHHELLKSMANKEYGFGG-LLCLDME-TEEKANRLMNYLQNYAQFGFM 381
             +V+YPG  DHP  +++     K+   G  L+  +++  +E A R +N L    +   +
Sbjct: 285 VARVIYPGRADHPQADIIA----KQMTGGSTLVAFELKGGKEAAFRFLNAL----KIVRI 336

Query: 382 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
           + +LG  ++L++   ++T   L+ E +A  GIS G +R+S G L   D        AL
Sbjct: 337 SNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG-LEDTDDLIEDLAAAL 393

Length = 398

>gnl|CDD|236201 PRK08248, PRK08248, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  177 bits (451), Expect = 7e-51
 Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 42/364 (11%)

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           IY+R  NPT     +++AALEG   A   +S   G +AI+  ++ + S+G  +V++ +LY
Sbjct: 57  IYTRIMNPTTDVFEKRIAALEGGIGALAVSS---GQAAITYSILNIASAGDEIVSSSSLY 113

Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           GGT+ L  H  P+   IT  FVD SD E   +AI   +TK L+ E+I NP   V +I  +
Sbjct: 114 GGTYNLFAHTLPK-LGITVKFVDPSDPENFEAAIT-DKTKALFAETIGNPKGDVLDIEAV 171

Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN 270
           + +AH+ G+ ++VDNTF SP +L P   GAD+VVHS +KFI G    I G +        
Sbjct: 172 AAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDW 231

Query: 271 SMMDLHQG-----------------------------ALMLLGPTMNPKVAFELSERIPH 301
                  G                              L  LG  ++P  +F L + +  
Sbjct: 232 KGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLET 291

Query: 302 LGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 359
           L LRM+ H   AL  A+ +++      V YPGL  HP +EL K    K  G G +L   +
Sbjct: 292 LHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPK--GQGAILTFGI 349

Query: 360 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 419
           +   +A +    + +   F  +A ++G  ++L+    S+T  +L+ EE+  AG++ GLVR
Sbjct: 350 KGGVEAGK--KLIDSVKLFSHLA-NVGDSKSLIIHPASTTHQQLSEEEQLAAGVTPGLVR 406

Query: 420 MSVG 423
           +SVG
Sbjct: 407 LSVG 410

Length = 431

>gnl|CDD|168320 PRK05968, PRK05968, hypothetical protein; Provisional

 Score =  176 bits (447), Expect = 1e-50
 Identities = 123/404 (30%), Positives = 182/404 (45%), Gaps = 29/404 (7%)

Query: 40  DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNP 99
              AAL +A  E      V   I  ++ FT    + M  ++AGE    +   IYSR  NP
Sbjct: 8   FDLAALITAHDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGE----KVRPIYSRGDNP 63

Query: 100 TVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLT 159
           TV      +A LEG E A   AS   GM+AISS ++     G  +VA R +Y     L  
Sbjct: 64  TVRAFEEMLAKLEGAEDARGFAS---GMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFE 120

Query: 160 HFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 219
               R   +   +VD  D E V  A+     K+LY ES ++    + ++  L+ LA   G
Sbjct: 121 TILKRM-GVEVDYVDGRDEEAVAKAL--PGAKLLYLESPTSWVFELQDVAALAALAKRHG 177

Query: 220 VTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG 278
           V  ++DN++ SP+   P  LG D+V+HS SK++ G +D +AG V G    +  +      
Sbjct: 178 VVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAE--- 234

Query: 279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHP 336
           A   LG  ++P  A+ L   +  L LRMK H   AL  ARR+K   +  +V +P L +HP
Sbjct: 235 AYPYLGAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHP 294

Query: 337 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 396
              L         G  GL               + L+ +     + VS G +E+L+  + 
Sbjct: 295 PAGLS--------GTSGLFSFIFREGIDVRAFADALKLFR----LGVSWGGHESLVVPAE 342

Query: 397 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440
                +      A  G+S   VR+ VG  GT    W+  E+AL+
Sbjct: 343 VVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEAL-WADLEQALA 385

Length = 389

>gnl|CDD|236103 PRK07810, PRK07810, O-succinylhomoserine sulfhydrylase; Provisional

 Score =  175 bits (445), Expect = 3e-50
 Identities = 114/363 (31%), Positives = 183/363 (50%), Gaps = 33/363 (9%)

Query: 78  RMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL 137
             F GEL    D F+YSR+ NPTV     ++  +EG EA + TAS   GMSA+ + L  L
Sbjct: 53  AAFTGEL----DRFVYSRYGNPTVSMFEERLRLIEGAEACFATAS---GMSAVFTALGAL 105

Query: 138 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 197
             +G  +VAAR+L+G    +     PR   + T FVD  D      A+    T+ ++FE+
Sbjct: 106 LGAGDRLVAARSLFGSCFVVCNEILPR-WGVETVFVDGEDLSQWEEALSV-PTQAVFFET 163

Query: 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGAD 256
            SNP  ++ +I  +S LAH  G  VV+DN F +PL+     LGADVVV+S +K I G   
Sbjct: 164 PSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGR 223

Query: 257 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 316
           ++ GA+ G    ++  +   Q  +   GP ++   A+ L + +  L LR++     AL  
Sbjct: 224 VLGGAILGDREYIDGPV---QKLMRHTGPALSAFNAWVLLKGLETLALRVRHSNASALRI 280

Query: 317 ARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGG------LLCLDMETEEKANRL 368
           A  ++       V YP L  HP ++L    A ++   GG      L   +   +++A  +
Sbjct: 281 AEFLEGHPAVRWVRYPFLPSHPQYDL----AKRQMSGGGTVVTFELDAPEDAAKKRAFEV 336

Query: 369 MNYLQNYAQFGFMAVS--LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG 426
           ++ L+       + +S  LG  ++L++   ++T   +  E +A  G+  G+VR+SVG   
Sbjct: 337 LDKLR------VIDISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVGLED 390

Query: 427 TLD 429
           T D
Sbjct: 391 TDD 393

Length = 403

>gnl|CDD|233359 TIGR01329, cysta_beta_ly_E, cystathionine beta-lyase, eukaryotic

 Score =  174 bits (442), Expect = 4e-50
 Identities = 116/388 (29%), Positives = 188/388 (48%), Gaps = 35/388 (9%)

Query: 41  PAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPT 100
            +  L +  ++   +   +M I  +ATF            A E GP    + Y+R  NPT
Sbjct: 1   LSTLLVNTDNKNDPYDASSMPIYQTATFKQPL--------AIENGP----YDYTRSGNPT 48

Query: 101 VLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTH 160
              L   +A L+  + A+  +S   GM+A+  V+ +L ++G  ++A   LYGGT  LLT 
Sbjct: 49  RTALESLLAKLDKADRAFAFSS---GMAALD-VITRLLNNGDEIIAGDDLYGGTDRLLTQ 104

Query: 161 FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV 220
             PR+  +    VD +D + V +A+   +TK++  ES +NP   + +I ++S +AH +  
Sbjct: 105 VVPRS-GVVVVHVDTTDLDKVKAAL-GPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNA 162

Query: 221 TVVVDNT-FSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA 279
            VVVDNT  SPL+ +P  LGAD+V HS +KF++G +D++AG +      +   +   Q +
Sbjct: 163 LVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNS 222

Query: 280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPH 337
               G  + P   + L   I  L +R+++    A   A  +       KV Y GL  HP 
Sbjct: 223 ---TGSGLAPFDCWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPG 279

Query: 338 HELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL--MSCS 395
             L  S A    G G +L  +  +   + RL+   + ++    + VS G   +L  M C 
Sbjct: 280 FHLHFSQAK---GAGSVLSFETGSVALSKRLVEATKLFS----ITVSFGSVNSLISMPCF 332

Query: 396 GSSTSSELNAEEKALAGISAGLVRMSVG 423
            S  S  + AE +   G+   LVR+SVG
Sbjct: 333 MSHAS--IPAEVREERGLPEDLVRLSVG 358

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. Length = 378

>gnl|CDD|131135 TIGR02080, O_succ_thio_ly, O-succinylhomoserine (thiol)-lyase

 Score =  168 bits (427), Expect = 7e-48
 Identities = 118/334 (35%), Positives = 174/334 (52%), Gaps = 17/334 (5%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           YSR  NPT   L + +A LEG   A  T +   GMSAI  V   L      +VA    YG
Sbjct: 45  YSRSGNPTRDLLQQALAELEGGAGAVVTNT---GMSAIHLVTTALLGPDDLLVAPHDCYG 101

Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
           GT+ LL     + C     FVD  D + + +A+ Q + K++  E+ SNP L V +I ++ 
Sbjct: 102 GTYRLLNALAKKGC-FRVLFVDQGDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKIC 159

Query: 213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 271
            LA   G  VVVDNTF SP + +P  LGAD+V+HS +K+++G +D+IAGAV   A     
Sbjct: 160 HLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVI--AKDPQV 217

Query: 272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLY 329
             +L   A   LG T     ++     +  L  RM+     A      ++   L  K+ Y
Sbjct: 218 AEELAWWA-NNLGVTGGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYY 276

Query: 330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 389
           PGL DHP HE+    A ++ GFG +L  +++  E+   +  +L   + F  +A SLG  E
Sbjct: 277 PGLPDHPGHEI---AARQQKGFGAMLSFELKGGEQT--VRRFLGGLSLFT-LAESLGGVE 330

Query: 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           +L++   + T + +  E +A AGIS  L+R+SVG
Sbjct: 331 SLIAHPATMTHAAMGPEARAEAGISDTLLRLSVG 364

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine [Amino acid biosynthesis, Aspartate family]. Length = 382

>gnl|CDD|236105 PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  169 bits (430), Expect = 7e-48
 Identities = 113/369 (30%), Positives = 183/369 (49%), Gaps = 41/369 (11%)

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           IY+R  NPT   + +++AALEG  AA   AS   G +A +  ++ L  +G H+V++  LY
Sbjct: 62  IYTRIMNPTQDVVEQRIAALEGGVAALLLAS---GQAAETFAILNLAGAGDHIVSSPRLY 118

Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           GGT+ L  +  P+   I  +FV+  D      A V+  TK  + E+ISNP + V +IP +
Sbjct: 119 GGTYNLFHYTLPK-LGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGV 177

Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC------- 263
           + +AH+ GV ++VDNT  +P ++ P   GAD+VVHS +K++ G    IAG +        
Sbjct: 178 AEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDW 237

Query: 264 -----------GPANLVNSMMDLHQGALML---------LGPTMNPKVAFELSERIPHLG 303
                       P+       +L   A  L         LG  ++P  AF +++ +  L 
Sbjct: 238 TQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLS 297

Query: 304 LRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET 361
           LR++ H   A   A  ++       V Y GL   P +E  K +A K  G G +L  ++  
Sbjct: 298 LRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPK--GTGAVLSFELAG 355

Query: 362 EEKANR-LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM 420
             +A +  +N L  ++       ++G   +L+    S+T S+L  EE+   G++ GLVR+
Sbjct: 356 GVEAGKAFVNALTLHSHV----ANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRL 411

Query: 421 SVGYLGTLD 429
           +VG  G  D
Sbjct: 412 AVGIEGIDD 420

Length = 436

>gnl|CDD|180392 PRK06084, PRK06084, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  165 bits (419), Expect = 2e-46
 Identities = 118/367 (32%), Positives = 180/367 (49%), Gaps = 47/367 (12%)

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           IY+R  NPT   L +++AALEG   A   AS   GM+AI+  +  +  +G ++V+   LY
Sbjct: 51  IYTRIMNPTNDVLEQRVAALEGGVGALAVAS---GMAAITYAIQTIAEAGDNIVSVAKLY 107

Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           GGT+ LL H  PR   I T F    D   +  A++  RTK ++ ESI NP   + +I  L
Sbjct: 108 GGTYNLLAHTLPRI-GIETRFAAHDDIAAL-EALIDERTKAVFCESIGNPAGNIIDIQAL 165

Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN--- 267
           +  AH  GV ++VDNT  +P++  P   GAD+VVHS++K+I G    I G V        
Sbjct: 166 ADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPW 225

Query: 268 --------LVNSMMDLHQGA-------------------LMLLGPTMNPKVAFELSERIP 300
                   L+N+    + G                    L  +G  ++P  AF + + + 
Sbjct: 226 AEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLE 285

Query: 301 HLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHEL-LKSMANKEYGFGGLLCL 357
            L LRM+ H   AL  AR +++      V Y GL DHP HEL  + M  K      +L  
Sbjct: 286 TLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKP---ASILSF 342

Query: 358 DMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG 416
            ++  + A  R ++ L+   +     V++G  ++L     S+T  +LN EE   AG+S  
Sbjct: 343 GIKGGQAAGARFIDALKLVVRL----VNIGDAKSLACHPASTTHRQLNDEELEKAGVSRD 398

Query: 417 LVRMSVG 423
           +VR+S+G
Sbjct: 399 MVRLSIG 405

Length = 425

>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated

 Score =  161 bits (410), Expect = 2e-45
 Identities = 123/394 (31%), Positives = 188/394 (47%), Gaps = 38/394 (9%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             G V   I  ++TF     E    M +    P    +IY+R  NPTV     + A LE 
Sbjct: 23  RFGNVTTPIFETSTFVYPNSEKEAYMDSTRGMP----YIYTRWGNPTVQAFEEKYAVLEN 78

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            E A   +S   GM AI+S ++ L   G  +++   LYG T     +FF +        V
Sbjct: 79  AEHALSFSS---GMGAITSAILSLIKKGKRILSISDLYGQTF----YFFNKVLKTLGIHV 131

Query: 174 DISDHEMVNSAIVQGRT-KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
           D  D + +NS         ++Y ESI+NPTL V +I  +S   H+    V+VD TF SP 
Sbjct: 132 DYIDTDRLNSLDFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEN--DVIVDATFASPY 189

Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPK 290
             +P  LGADVV+HS +K+ISG +D++ G       ++ N++++  +     LG   +P 
Sbjct: 190 NQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK----TLGSNPDPI 245

Query: 291 VAFELSERIPHLGLRMKEHCHRALIFAR--RMKKLGLKVLYPGLEDHPHHELLKSMANKE 348
            A+     +  LGLRM++H    +  AR  R  K    V YP  E          +  K 
Sbjct: 246 QAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE----------IGKKV 295

Query: 349 Y-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 407
             GFGG+L  ++ + E  ++ +  L    +   +A SLG  E+L++    ++ S L+ EE
Sbjct: 296 LRGFGGMLSFELRSMEDVHKFIRNL----EIPMVAASLGGVESLITLPVETSHSSLSPEE 351

Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441
           +   GIS  LVR S+G +  +D      E ALS+
Sbjct: 352 RERLGISDNLVRFSIG-IEDIDDLIKDIENALSK 384

Length = 384

>gnl|CDD|169194 PRK08045, PRK08045, cystathionine gamma-synthase; Provisional

 Score =  160 bits (405), Expect = 9e-45
 Identities = 107/334 (32%), Positives = 173/334 (51%), Gaps = 17/334 (5%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           YSR  NPT   + R +A LEG   A  T +   GMSAI  V       G  +VA    YG
Sbjct: 46  YSRRGNPTRDVVQRALAELEGGAGAVLTNT---GMSAIHLVTTVFLKPGDLLVAPHDCYG 102

Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
           G++ L      R C     FVD  D + + +A+ + + K++  ES SNP L V +I ++ 
Sbjct: 103 GSYRLFDSLAKRGC-YRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKIC 160

Query: 213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 271
            LA + G   VVDNTF SP + +P  LGAD+V+HS +K+++G +D++AG V      V +
Sbjct: 161 HLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVT 220

Query: 272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLY 329
            +      + + G   +   ++ L   +  L  RM+     A    + ++   L  K+ +
Sbjct: 221 ELAWWANNIGVTGGAFD---SYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYH 277

Query: 330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE 389
           P L ++  HE+    A ++ GFG +L  +++ +E+  R   +L   + F  +A SLG  E
Sbjct: 278 PSLPENQGHEI---AARQQKGFGAMLSFELDGDEQTLR--RFLGGLSLFT-LAESLGGVE 331

Query: 390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           +L+S + + T + +  E +A AGIS  L+R+S G
Sbjct: 332 SLISHAATMTHAGMAPEARAAAGISETLLRISTG 365

Length = 386

>gnl|CDD|180344 PRK05994, PRK05994, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  154 bits (392), Expect = 2e-42
 Identities = 113/364 (31%), Positives = 170/364 (46%), Gaps = 42/364 (11%)

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           IY+R  NPT   L  ++AALEG  AA   AS   G +A   V   L   G   +AAR LY
Sbjct: 56  IYTRITNPTNAVLEERVAALEGGTAALAVAS---GHAAQFLVFHTLLQPGDEFIAARKLY 112

Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           GG+     H F ++      + D  D      AI   RTK ++ ESI+NP   V +I  +
Sbjct: 113 GGSINQFGHAF-KSFGWQVRWADADDPASFERAI-TPRTKAIFIESIANPGGTVTDIAAI 170

Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV--CGPANL 268
           + +AH  G+ ++VDNT  SP ++ P   GAD+VVHS++KF+ G  + + G +   G  + 
Sbjct: 171 AEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDW 230

Query: 269 VNSM--------------MDLHQG-------------ALMLLGPTMNPKVAFELSERIPH 301
             S               + LH+               L  LGP ++P  AF +   I  
Sbjct: 231 SKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIET 290

Query: 302 LGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM 359
           L LRM+ H   AL  A  +K       V Y GL D P+H L +  + K  G G +    +
Sbjct: 291 LPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPK--GAGAVFTFGL 348

Query: 360 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR 419
           +   +A   +  + +   F  +A ++G   +L+    S+T  +L  E+K  AG    +VR
Sbjct: 349 KGGYEAG--VKLVSSLKLFSHLA-NIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVR 405

Query: 420 MSVG 423
           +S+G
Sbjct: 406 LSIG 409

Length = 427

>gnl|CDD|168128 PRK05613, PRK05613, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  150 bits (381), Expect = 7e-41
 Identities = 120/428 (28%), Positives = 192/428 (44%), Gaps = 52/428 (12%)

Query: 33  STAAAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGE-LGPDRDFF 91
           S A  W     ++ + +    +    N+ I  + ++     E  ++ FA E LGP     
Sbjct: 7   SNADQWGFETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALEDLGP----- 61

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           IYSR  NPTV  L  ++A+LEG   A   AS   G +A ++ ++ L  +G H+V +  LY
Sbjct: 62  IYSRLTNPTVEALENRIASLEGGVHAVAFAS---GQAAETAAILNLAGAGDHIVTSPRLY 118

Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           GGT  L      R   I  TFV+  D      A VQ  TK  + E+ +NP   V +IP +
Sbjct: 119 GGTETLFLVTLNR-LGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAV 177

Query: 212 SRLAHDKGVTVVVDNTFSPLVL-SPARLGADVVVHSISKFISGGADIIAGAVC------- 263
           + +AH   V ++VDNT +   L  P  LGADVVV S++KF +G    + G +        
Sbjct: 178 AEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDW 237

Query: 264 ----------------GPANLVNSMMDLHQGALML---------LGPTMNPKVAFELSER 298
                            PA       DL   A  L          G T++P  A+  ++ 
Sbjct: 238 TVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQG 297

Query: 299 IPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLC 356
           +  L LR++ H   A+  A  +       KV + GL+D P +   K     +Y  G +L 
Sbjct: 298 LDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYA-TKEKLGLKYT-GSVLS 355

Query: 357 LDM-ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA 415
            D+   +++A   ++ L+ ++       ++G   +L+    ++T S+ +    A AGI+ 
Sbjct: 356 FDIKGGKDEAWAFIDALKLHSNLA----NIGDVRSLVVHPATTTHSQSDEAGLARAGITQ 411

Query: 416 GLVRMSVG 423
             VR+SVG
Sbjct: 412 ATVRLSVG 419

Length = 437

>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed

 Score =  146 bits (370), Expect = 7e-40
 Identities = 97/337 (28%), Positives = 166/337 (49%), Gaps = 37/337 (10%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
           F YSR  NPT   L + +A LEG +  +  +S   GM+AI  ++M L  SG  ++ +  L
Sbjct: 44  FDYSRTGNPTRGVLEQAIADLEGGDQGFACSS---GMAAIQ-LVMSLFRSGDELIVSSDL 99

Query: 151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
           YGGT+ L      +  N+   +V+ +  + +  AI    TK ++ E+ +NP +   +I  
Sbjct: 100 YGGTYRLFE-EHWKKWNVRFVYVNTASLKAIEQAITP-NTKAIFIETPTNPLMQETDIAA 157

Query: 211 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG-AVCGPANL 268
           ++++A   G+ ++VDNTF +P++  P   GAD+V+HS +K++ G  D++AG  V     L
Sbjct: 158 IAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQEL 217

Query: 269 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GLK- 326
              +      A    G  ++P  ++ L   +  L LRM++H   A   A  + +  G+  
Sbjct: 218 CERLAYYQNAA----GAVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTD 273

Query: 327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG 386
           VLYPG                    GG+L   ++ EE  N    +L++     F A SLG
Sbjct: 274 VLYPGR-------------------GGMLSFRLQDEEWVNP---FLKSLKLITF-AESLG 310

Query: 387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
             E+ ++   + T +++  E +   G+   L+R SVG
Sbjct: 311 GVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVG 347

Length = 366

>gnl|CDD|181554 PRK08776, PRK08776, cystathionine gamma-synthase; Provisional

 Score =  138 bits (350), Expect = 1e-36
 Identities = 116/338 (34%), Positives = 169/338 (50%), Gaps = 25/338 (7%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           Y+R  NPT   L   +A LEG      TA+   GM AI+ VL  L   G  +V     YG
Sbjct: 54  YTRSGNPTRDLLGEALAELEGGAGGVITAT---GMGAINLVLNALLQPGDTLVVPHDAYG 110

Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
           G+  L      +      T  D++D   +  A+ Q   K++  E+ SNP L + ++  + 
Sbjct: 111 GSWRLFNALAKKGHFALIT-ADLTDPRSLADALAQ-SPKLVLIETPSNPLLRITDLRFVI 168

Query: 213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 271
             AH  G   VVDNTF SP +  P   GAD+V+HS +K+I+G +D++ GAV      V  
Sbjct: 169 EAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAV------VAR 222

Query: 272 MMDLHQGALM---LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--K 326
             +LHQ  +     LG T +P  AF     +  L  R++ H   A   A  +       +
Sbjct: 223 DAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQ 282

Query: 327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR-LMNYLQNYAQFGFMAVSL 385
           V YPGL  HP H L    A ++ GFG +L  ++E  E A R  ++ L+ +     +A SL
Sbjct: 283 VYYPGLASHPGHAL---AARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFT----LAESL 335

Query: 386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           G  E+L++   S T + + AE +A AGIS GL+R+SVG
Sbjct: 336 GGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVG 373

Length = 405

>gnl|CDD|181567 PRK08861, PRK08861, cystathionine gamma-synthase; Provisional

 Score =  136 bits (345), Expect = 4e-36
 Identities = 107/340 (31%), Positives = 165/340 (48%), Gaps = 29/340 (8%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           Y+R  NP    L + ++ LE  + A  T     G SA++  +  L      +VA    YG
Sbjct: 47  YTRSGNPNRGLLEQTLSELESGKGAVVT---NCGTSALNLWVSALLGPDDLIVAPHDCYG 103

Query: 153 GTHALLTHFFPRA--CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
           GT+ L   F  RA   +    FVD SD   +++A+ + + K++  E+ SNP + V +I E
Sbjct: 104 GTYRL---FNTRANKGDFKVQFVDQSDAAALDAALAK-KPKLILLETPSNPLVRVVDIAE 159

Query: 211 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 269
           L + A   G  V VDNTF +P++  P  LGAD V+HS +K+I+G +D+I G +       
Sbjct: 160 LCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLI------ 213

Query: 270 NSMMDLHQGALM----LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL 325
            +    H   L      +G T  P  ++     I  LG RM+ H   A      ++   L
Sbjct: 214 -TKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSL 272

Query: 326 --KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 383
              + +P L +HP HE+ K    ++ GFG +  L  E      +L  +++  A F  +A 
Sbjct: 273 VGTIYHPSLPEHPGHEIAK---KQQSGFGSM--LSFEFAGSFEQLKVFVKALALFS-LAE 326

Query: 384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           SLG  E+L+    S T   +  E  A AG+S  L+R+SVG
Sbjct: 327 SLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVG 366

Length = 388

>gnl|CDD|180809 PRK07049, PRK07049, methionine gamma-lyase; Validated

 Score =  135 bits (343), Expect = 2e-35
 Identities = 99/360 (27%), Positives = 160/360 (44%), Gaps = 54/360 (15%)

Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           +YSR  +P    +  ++A  EG E+A   +S   GMSAI++ L+     G  ++ ++ LY
Sbjct: 76  VYSRFNHPNSEIVEDRLAVYEGAESAALFSS---GMSAIATTLLAFVRPGDVILHSQPLY 132

Query: 152 GGTHALLTHFFPRACNITTTFVDISD-------HEMVNSAIVQGRTKVLYFESISNPTLA 204
           GGT  LL   F    N     V  +D            +A  +GR  ++  E+ +NPT +
Sbjct: 133 GGTETLLAKTFR---NFGVGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNS 189

Query: 205 VANIPELSRLA------HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADI 257
           + ++  + R+A            +  DNT   P+   P   GAD+ V+S++K++ G +D+
Sbjct: 190 LVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGHSDL 249

Query: 258 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA 317
           +AGAV G   L+  +  L + A   +G  ++P   + L   +  L LRM+     A   A
Sbjct: 250 VAGAVLGRKALIRQVRAL-RSA---IGTQLDPHSCWMLGRSLETLVLRMERANRNARAVA 305

Query: 318 RRMKKLGLKVLYPGLEDHPHHELL--------KSMANKEY-----GFGGLLCLDME-TEE 363
                         L DHP  E L         S     Y     G G     D++  + 
Sbjct: 306 EF------------LRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQA 353

Query: 364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
            A R +N LQ +     +AVSLG  E+L S   S T S + A+ +   G+    +R+S+G
Sbjct: 354 AAFRFLNALQIFK----LAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIG 409

Length = 427

>gnl|CDD|235983 PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed

 Score =  133 bits (336), Expect = 5e-35
 Identities = 102/339 (30%), Positives = 168/339 (49%), Gaps = 43/339 (12%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
           F Y+R  NPT   L   +AA+E  + A  T+S   GMSAI  +   +   G  VVA R L
Sbjct: 46  FDYTRTKNPTRAKLEETLAAIESADYALATSS---GMSAIV-LAFSVFPVGSKVVAVRDL 101

Query: 151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
           YGG+      +F +           ++ E    A ++  T ++Y E+ +NP +   +I +
Sbjct: 102 YGGSF----RWFNQQEKEGRFHFTYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEK 157

Query: 211 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV 269
           +++LAH KG  V+VDNTF SP+   P  LGAD+V+HS +K++SG  D++AG V      V
Sbjct: 158 VAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVV------V 211

Query: 270 NSMMDLHQGALMLL---GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL- 325
            + ++L++     L   G  ++P  ++ L   +  L LRM+     A      +KK    
Sbjct: 212 TNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAV 271

Query: 326 -KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 384
            +VLY G                    GG++   +  E +   ++N L+    F F A S
Sbjct: 272 KEVLYTGK-------------------GGMISFKVADETRIPHILNSLK---VFTF-AES 308

Query: 385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           LG  E+L++   + T +++ AE +   G++  L+R+S+G
Sbjct: 309 LGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIG 347

Length = 364

>gnl|CDD|102505 PRK06702, PRK06702, O-acetylhomoserine aminocarboxypropyltransferase; Validated

 Score =  132 bits (333), Expect = 3e-34
 Identities = 105/366 (28%), Positives = 177/366 (48%), Gaps = 44/366 (12%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
           +IY+R  NPT+    +++A LEG   A  TAS   G +AI   ++ +CSSG H++ + T+
Sbjct: 53  YIYTRIGNPTLAAFEQKLAELEGGVGAVATAS---GQAAIMLAVLNICSSGDHLLCSSTV 109

Query: 151 YGGTHALLTHFFPRACNITTTFVD--ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANI 208
           YGGT  L      R   I  TF +  ++  E+V  A+   +TK++Y ES+ NP + V N 
Sbjct: 110 YGGTFNLFGVSL-RKLGIDVTFFNPNLTADEIV--ALANDKTKLVYAESLGNPAMNVLNF 166

Query: 209 PELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN 267
            E S  A +  V  +VDNT  +P +      GA+++VHS +K+I G A  + G V    N
Sbjct: 167 KEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGN 226

Query: 268 L-------------------VNSMMDLHQGALML---------LGPTMNPKVAFELSERI 299
                               V+ + +    A ++          G  M+P  A+  +  +
Sbjct: 227 FDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGL 286

Query: 300 PHLGLRMKEHCHRALIFARRMKKLGLK--VLYPGLEDHPHHELLKSMANKEYGFGGLLCL 357
             L LRM+ H   AL  A+ +        V YPGL+ + ++ L +    K  G  G+L  
Sbjct: 287 ETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKK--GASGVLTF 344

Query: 358 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 417
            ++   +A +   ++ N  +   +   +    T +    S+T  +L+AE++ LAG+++ L
Sbjct: 345 GIKGGLEAAK--EFIAN-VKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDL 401

Query: 418 VRMSVG 423
           +R+SVG
Sbjct: 402 IRLSVG 407

Length = 432

>gnl|CDD|178125 PLN02509, PLN02509, cystathionine beta-lyase

 Score =  132 bits (332), Expect = 7e-34
 Identities = 107/356 (30%), Positives = 181/356 (50%), Gaps = 31/356 (8%)

Query: 75  TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVL 134
           T ++  A E GP    + Y+R  NPT   L   +A L+  + A+C  S   GM+A+S+V 
Sbjct: 113 TFKQPSAIENGP----YDYTRSGNPTRDALESLLAKLDKADRAFCFTS---GMAALSAV- 164

Query: 135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY 194
             L  +G  +VA   +YGG+  LL+   PR+  +    V+ ++ + V +AI   +TK+++
Sbjct: 165 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTNLDEVAAAI-GPQTKLVW 222

Query: 195 FESISNPTLAVANIPELSRLAHDKGVTVVVDNT-FSPLVLSPARLGADVVVHSISKFISG 253
            ES +NP   +++I +++ +AH +G  V+VDN+  SP++  P  LGAD+V+HS +KFI+G
Sbjct: 223 LESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAG 282

Query: 254 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 313
            +D++AG +      +   +   Q +    G  + P   +     I  + LR+++    A
Sbjct: 283 HSDVMAGVLAVKGEKLAKEVYFLQNS---EGSGLAPFDCWLCLRGIKTMALRIEKQQENA 339

Query: 314 LIFAR------RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 367
              A       R+K    KV Y GL DHP H L  S A    G G +      +      
Sbjct: 340 RKIAMYLSSHPRVK----KVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSVA---- 388

Query: 368 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
           L  +L    ++  +AVS G  ++L+S     + + + AE +   G++  LVR+S G
Sbjct: 389 LSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG 444

Length = 464

>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated

 Score =  118 bits (297), Expect = 1e-29
 Identities = 105/358 (29%), Positives = 150/358 (41%), Gaps = 48/358 (13%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           Y R  NPT   L   +  LEG EA        +GM+AI++VL  L   G  VV     Y 
Sbjct: 45  YGRASNPTWRALEAALGELEGAEAL----VFPSGMAAITAVLRALLRPGDTVVVPADGYY 100

Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
              AL   +      +T          M  +A+      ++  E+ SNP L V ++  L+
Sbjct: 101 QVRALAREYL-APLGVTVREA--PTAGMAEAAL--AGADLVLAETPSNPGLDVCDLAALA 155

Query: 213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG--AVCGPANLV 269
             AH  G  +VVDNT  +PL   P  LGAD+VV S +K ++G +D++ G  A   P    
Sbjct: 156 AAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPE--- 212

Query: 270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LGL 325
             +M   +   +L G    P  A+     +  LGLR    C  AL  A  +       G+
Sbjct: 213 --LMAAVERWRLLAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGV 270

Query: 326 KVLYPGLEDHPHHEL-LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS 384
           +  YPGL   P HE+  + M      FGGL+  ++     A R +   +        A S
Sbjct: 271 R--YPGLPGDPAHEVAARQMR----RFGGLVSFELADAAAAERFVAASRLVVA----ATS 320

Query: 385 LGYYETLMSCSGSSTSSELNAEEKALAG--ISAGLVRMSVGYLGTLDQRWSQFEKALS 440
            G         G  TS    A+ +A  G  +  G VR+S G   T D   +  E+AL 
Sbjct: 321 FG---------GVHTS----ADRRARWGDAVPEGFVRLSCGIEDTDDL-VADLERALD 364

Length = 366

>gnl|CDD|130391 TIGR01324, cysta_beta_ly_B, cystathionine beta-lyase, bacterial

 Score =  113 bits (283), Expect = 1e-27
 Identities = 89/380 (23%), Positives = 170/380 (44%), Gaps = 35/380 (9%)

Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G VN  ++ ++T         RR         +    Y R    T   L   M  LEG  
Sbjct: 15  GSVNPPLQRASTVLFDSHAAQRR--------AKGELTYGRRGTLTHFALQDAMCELEGGA 66

Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
             Y   S   G++A+++ ++    +G HV+   + Y  T         R   +  T+ D 
Sbjct: 67  GCYLYPS---GLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM-GVDITYYDP 122

Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS 234
              E + + ++Q  TKVL+ E+ S+ T  + +IP +++ A + G+ +++DNT++  L+  
Sbjct: 123 LIGEDI-ATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK 181

Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
           P   G D+ + + +K++ G +DI+ G V   A   + + +       L+G  ++   A+ 
Sbjct: 182 PLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLRE----HSYLMGQMVDADDAYT 237

Query: 295 LSERIPHLGLRMKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELLKSMANKEY-GF 351
               +  LG+R+K+H   +L  A+ +  +    +VL+P L   P HE  K    +++ G 
Sbjct: 238 TLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWK----RDFSGS 293

Query: 352 GGLLCLDME--TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 409
            GL    ++  T+++ +  +++LQ +     +  S G YE+L  C       EL      
Sbjct: 294 SGLFSFVLQRLTQKQVHAFLDHLQLFG----LGYSWGGYESLALC----NQPELGHRPNI 345

Query: 410 LAGISAGLVRMSVGYLGTLD 429
              +   L+R+ +G     D
Sbjct: 346 KRNLEGPLIRVHIGLENVDD 365

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys [Amino acid biosynthesis, Aspartate family]. Length = 377

>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional

 Score =  100 bits (251), Expect = 3e-23
 Identities = 73/256 (28%), Positives = 122/256 (47%), Gaps = 23/256 (8%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           Y  H  PT L L++++A +EG   A    S   G++AIS V   L  +G  V+     YG
Sbjct: 59  YGLHATPTSLALAQRLAEIEGGRHALLQPS---GLAAISLVYFGLVKAGDDVLIPDNAYG 115

Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAI---VQGRTKVLYFESISNPTLAVANIP 209
             +     +  R   IT  F D     ++ + I   +Q  T++++ E+  + T+ V ++P
Sbjct: 116 -PNRDHGEWLARDFGITVRFYD----PLIGAGIADLIQPNTRLIWLEAPGSVTMEVPDVP 170

Query: 210 ELSRLAHDKGVTVVVDNTFSP-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL 268
            ++  A  +GV   +DNT+S  L   P   G D+ V +++K+ SGG+D++ GA       
Sbjct: 171 AITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGAT------ 224

Query: 269 VNSMMDLH---QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG- 324
           + +  +LH   + A M LG  ++      +   +P L +R+  H   AL  A  +K    
Sbjct: 225 ITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPE 284

Query: 325 -LKVLYPGLEDHPHHE 339
              VL+P L D P H 
Sbjct: 285 IATVLHPALPDCPGHA 300

Length = 394

>gnl|CDD|181615 PRK09028, PRK09028, cystathionine beta-lyase; Provisional

 Score = 98.7 bits (246), Expect = 1e-22
 Identities = 72/256 (28%), Positives = 116/256 (45%), Gaps = 18/256 (7%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           Y R   PT       +  LEG      TA   +G +AIS+ L+    +G H++   + Y 
Sbjct: 55  YGRRGTPTHFAFQAAIVELEGGAG---TALYPSGAAAISNALLSFLKAGDHLLMVDSCYE 111

Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAI---VQGRTKVLYFESISNPTLAVANIP 209
            T  L          I TT+ D     M+   I   ++  TKVL+ ES  + T+ V ++P
Sbjct: 112 PTRDLCDKILKGF-GIETTYYD----PMIGEGIRELIRPNTKVLFLESPGSITMEVQDVP 166

Query: 210 ELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL 268
            LSR+AH+  + V++DNT+ SP+   P  +G D+ + + +K+I G +D++ G     A  
Sbjct: 167 TLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGT----ATA 222

Query: 269 VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--K 326
                D  +    L+G   +P   +     +  LG+R+ +H   AL  A  +        
Sbjct: 223 NEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDH 282

Query: 327 VLYPGLEDHPHHELLK 342
           V +P  E  P HE  K
Sbjct: 283 VRHPAFETCPGHEFFK 298

Length = 394

>gnl|CDD|235657 PRK05967, PRK05967, cystathionine beta-lyase; Provisional

 Score = 89.9 bits (223), Expect = 1e-19
 Identities = 75/297 (25%), Positives = 137/297 (46%), Gaps = 32/297 (10%)

Query: 55  HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
           HG VN  +  ++T    + ETM           +  + Y     PT   L + + ALEG+
Sbjct: 28  HGFVNPPVVHASTVLFPDAETM------ATRGQK--YTYGTRGTPTTDALCKAIDALEGS 79

Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTF 172
                  S   G++A++   +   S G H +   ++Y  T     HF    C+  +    
Sbjct: 80  AGTILVPS---GLAAVTVPFLGFLSPGDHALIVDSVYYPTR----HF----CDTMLKRLG 128

Query: 173 VDISDHE-MVNSAI---VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF 228
           V++  ++  + + I   ++  TKV++ E+  + T  + +IP ++  AH  G  V++DNT+
Sbjct: 129 VEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188

Query: 229 -SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM 287
            +PL   P   G D+ +H+ +K+ SG +DI+ G V         +++ H      LG   
Sbjct: 189 ATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH----GTLGLCA 244

Query: 288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRM--KKLGLKVLYPGLEDHPHHELLK 342
            P   +++   +  +G+R++ H   AL  AR +  +    +VL+P L   P HE+ K
Sbjct: 245 GPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWK 301

Length = 395

>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 75/310 (24%), Positives = 134/310 (43%), Gaps = 28/310 (9%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           Y R    T  +L   M  LEG            G +A+++ ++     G HV+   T Y 
Sbjct: 56  YGRRGTLTHFSLQEAMCELEGGAGCALYPC---GAAAVANAILAFVEQGDHVLMTGTAYE 112

Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
            T    +    +   +TTT+ D      + + ++Q  TKV++ ES  + T+ V ++P + 
Sbjct: 113 PTQDFCSKILSKL-GVTTTWFDPLIGADI-AKLIQPNTKVVFLESPGSITMEVHDVPAIV 170

Query: 213 RLAHDKG--VTVVVDNTFSPLVLSPA-RLGADVVVHSISKFISGGADI-----IAGAVCG 264
                      +++DNT++  VL  A   G D+ + + +K++ G +D      +A A C 
Sbjct: 171 AAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCW 230

Query: 265 PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM-KKL 323
                NS          L+G  ++   A+  S  +  LG+R+++H   +L  A  + +  
Sbjct: 231 EQLRENS---------YLMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHP 281

Query: 324 GLKVLY-PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA 382
            +  +  P L     HE  K       G  GL    ++ +    +L NYL N++ F  MA
Sbjct: 282 EVARVNHPALPGCKGHEFWKRDFT---GSSGLFSFVLKKKLTDEQLANYLDNFSLFS-MA 337

Query: 383 VSLGYYETLM 392
            S G +E+L+
Sbjct: 338 YSWGGFESLI 347

Length = 395

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 54/247 (21%), Positives = 91/247 (36%), Gaps = 26/247 (10%)

Query: 126 GMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFVDISDHEMVNS 183
              A+S +L  L + G  V+     Y G    A L         +      + D E++ +
Sbjct: 68  AQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEA 127

Query: 184 AIVQGRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPLV----LSPA 236
           A    +TK+LY  + +NPT AV +  EL  L   A   G+ ++ D  ++ LV      PA
Sbjct: 128 AK-TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPA 186

Query: 237 RLGAD-----VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
               D     +V+ S SK   G   +  G +  P   +   +            T++   
Sbjct: 187 LALLDAYERVIVLRSFSKTF-GLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAA 245

Query: 292 AFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKV---------LYPGLEDHPHHELL 341
           A   L +   HL    + +  R       +K+LG  V         L+  L +    E L
Sbjct: 246 AAAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFL 305

Query: 342 KSMANKE 348
           + +  + 
Sbjct: 306 ERLLLEA 312

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 26/118 (22%)

Query: 179 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH---DKGVTVVVDNTFSPLV--- 232
           E + +AI   +TK +   S +NPT AV +  EL  +     +  + ++ D  +  LV   
Sbjct: 154 EDLEAAITP-KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDG 212

Query: 233 --------LSPARLGADVVVHSISKFISGGADIIAG-----AVCGPANLVNSMMDLHQ 277
                   L+ AR    + ++S SK        + G      V  P  L+ ++  L  
Sbjct: 213 AEHPSILELAGARDRT-ITINSFSKTYG-----MTGWRIGWVVGPPEELIAALRKLKS 264

Length = 393

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 186 VQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD--NTFSPLVLSPARLGADVV 243
           +  +TK++    +SN T  V  + E++ LAH+ G  V+VD       L +    LG D +
Sbjct: 159 ITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFL 218

Query: 244 VHSISKFISGGADIIAGAVCGPANLVNSM 272
             S  K++ G   I  G +     L+  +
Sbjct: 219 AFSGHKWLLGPTGI--GVLYVRKELLEEL 245

Length = 405

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 51/230 (22%), Positives = 80/230 (34%), Gaps = 40/230 (17%)

Query: 64  ASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASD 123
            S T T   P     M A  +G +    +Y    +PTV  L  ++A L G EAA    S 
Sbjct: 3   RSDTVTGPTPAMREAMAAAMVGDE----VYGG--DPTVNRLEDRVAELFGKEAALFVPS- 55

Query: 124 KAGMSAISSVLMQLCSSGGHVVAART--LY---GGTHALLTHFFPRACNI----TTTFVD 174
             G  A    LM  C  G  V+      +Y    G HA L    P              D
Sbjct: 56  --GTMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGGAQPVPLPGAEAGKLDLED 113

Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPT-------LAVANIPELSRLAHDKGVTVVVD-- 225
           +         I    T ++   S+ N         +++  + E+  +A + G+ + +D  
Sbjct: 114 LEAAIRPVGDIHFPPTGLI---SLENTHNSAGGQVVSLEELREIRAIAREHGIPLHLDGA 170

Query: 226 ----NTFSPLVLSPARL--GADVVVHSISKFISGGADIIAGAVCGPANLV 269
                  +  V     +   AD V  S+SK    GA  +   + G  + +
Sbjct: 171 RLANAAVALGV-IVKEITSYADSVSMSLSK--GLGAP-VGSVLAGSDDFI 216

Length = 288

>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 25/166 (15%)

Query: 184 AIVQGRTKVLYFESISNPTLAVANIPELSRLA-----HDKGVTVVVDNTFSPLVLSPARL 238
           A +  +TK +   S +NPT AV N  EL  +A     HD  + V+ D  ++ L       
Sbjct: 149 AAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHD--LIVLSDEIYAELTYD---- 202

Query: 239 GADVVVHSISK------FISGGADIIA------GAVCGPANLVNSMMDLHQGALMLLGPT 286
            A     SI         ISG +   A      G +  P     +M+ +HQ ++M   PT
Sbjct: 203 EAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMM-CAPT 261

Query: 287 MNPKVAFELSERIPHLGLRMKE-HCHRALIFARRMKKLGLKVLYPG 331
           M    A E         +RM++ +  R   F     ++GL    PG
Sbjct: 262 MAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPG 307

Length = 378

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 189 RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHS 246
           +TK++    +SN    V  + E+++LAH  G  V+VD   +   + +    L  D  V S
Sbjct: 159 KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFS 218

Query: 247 ISKFISGGADIIAGAVCGPANLVNSM 272
             K + G   I  G + G   L+  M
Sbjct: 219 GHK-MYGPTGI--GVLYGKEELLEQM 241

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	100.0
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	100.0
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	100.0
PLN02242	418	methionine gamma-lyase	100.0
PRK08861	388	cystathionine gamma-synthase; Provisional	100.0
PRK08249	398	cystathionine gamma-synthase; Provisional	100.0
PRK08114	395	cystathionine beta-lyase; Provisional	100.0
PRK09028	394	cystathionine beta-lyase; Provisional	100.0
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	100.0
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	100.0
PRK05967	395	cystathionine beta-lyase; Provisional	100.0
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	100.0
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	100.0
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	100.0
PRK08045	386	cystathionine gamma-synthase; Provisional	100.0
PRK05939	397	hypothetical protein; Provisional	100.0
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK07049	427	methionine gamma-lyase; Validated	100.0
PRK08574	385	cystathionine gamma-synthase; Provisional	100.0
PRK07503	403	methionine gamma-lyase; Provisional	100.0
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	100.0
PRK06234	400	methionine gamma-lyase; Provisional	100.0
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	100.0
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	100.0
PRK06767	386	methionine gamma-lyase; Provisional	100.0
PLN02509	464	cystathionine beta-lyase	100.0
PRK08776	405	cystathionine gamma-synthase; Provisional	100.0
PRK07671	377	cystathionine beta-lyase; Provisional	100.0
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	100.0
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	100.0
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	100.0
PRK06460	376	hypothetical protein; Provisional	100.0
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	100.0
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	100.0
PRK07811	388	cystathionine gamma-synthase; Provisional	100.0
PRK08064	390	cystathionine beta-lyase; Provisional	100.0
PRK07050	394	cystathionine beta-lyase; Provisional	100.0
PRK06434	384	cystathionine gamma-lyase; Validated	100.0
PRK05968	389	hypothetical protein; Provisional	100.0
PRK07269	364	cystathionine gamma-synthase; Reviewed	100.0
PRK08247	366	cystathionine gamma-synthase; Reviewed	100.0
PRK07582	366	cystathionine gamma-lyase; Validated	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	100.0
PRK02948	381	cysteine desulfurase; Provisional	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
PLN02651	364	cysteine desulfurase	99.98
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.98
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.97
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.97
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.97
PRK07681	399	aspartate aminotransferase; Provisional	99.97
PRK05957	389	aspartate aminotransferase; Provisional	99.97
PRK06207	405	aspartate aminotransferase; Provisional	99.97
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.97
PRK07324	373	transaminase; Validated	99.97
PRK06290	410	aspartate aminotransferase; Provisional	99.97
PRK12414	384	putative aminotransferase; Provisional	99.97
PLN00175	413	aminotransferase family protein; Provisional	99.97
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.97
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.97
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.97
PRK06108	382	aspartate aminotransferase; Provisional	99.96
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.96
PRK08960	387	hypothetical protein; Provisional	99.96
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.96
PRK08068	389	transaminase; Reviewed	99.96
PRK07682	378	hypothetical protein; Validated	99.96
PRK09082	386	methionine aminotransferase; Validated	99.96
PLN02187	462	rooty/superroot1	99.96
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.96
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.96
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.96
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.96
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.96
PRK07179	407	hypothetical protein; Provisional	99.96
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.96
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.96
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.96
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.96
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.96
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.96
PRK14012	404	cysteine desulfurase; Provisional	99.96
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.96
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.96
PRK08912	387	hypothetical protein; Provisional	99.96
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.96
PRK05942	394	aspartate aminotransferase; Provisional	99.96
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.96
PRK07777	387	aminotransferase; Validated	99.96
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.96
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.96
PTZ00433	412	tyrosine aminotransferase; Provisional	99.96
PRK07683	387	aminotransferase A; Validated	99.96
PRK08361	391	aspartate aminotransferase; Provisional	99.96
PRK09105	370	putative aminotransferase; Provisional	99.96
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.96
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.96
PRK05764	393	aspartate aminotransferase; Provisional	99.96
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.96
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.96
PRK06225	380	aspartate aminotransferase; Provisional	99.96
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.96
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.96
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.96
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.96
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.96
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.96
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.96
PLN02656	409	tyrosine transaminase	99.96
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.96
PRK06348	384	aspartate aminotransferase; Provisional	99.96
PTZ00377	481	alanine aminotransferase; Provisional	99.96
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.96
PRK07337	388	aminotransferase; Validated	99.95
PRK09148	405	aminotransferase; Validated	99.95
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.95
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.95
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.95
PRK06107	402	aspartate aminotransferase; Provisional	99.95
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.95
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.95
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.95
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.95
PRK08636	403	aspartate aminotransferase; Provisional	99.95
PRK09265	404	aminotransferase AlaT; Validated	99.95
PRK07568	397	aspartate aminotransferase; Provisional	99.95
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.95
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.95
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.95
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.95
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.95
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.95
PRK08363	398	alanine aminotransferase; Validated	99.95
PRK07550	386	hypothetical protein; Provisional	99.95
PRK03321	352	putative aminotransferase; Provisional	99.95
PRK06836	394	aspartate aminotransferase; Provisional	99.95
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.95
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.95
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.95
PRK08175	395	aminotransferase; Validated	99.95
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.95
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.95
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.95
PRK07908	349	hypothetical protein; Provisional	99.94
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.94
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.94
PRK06855	433	aminotransferase; Validated	99.94
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.94
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.94
PRK05839	374	hypothetical protein; Provisional	99.94
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.94
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.94
PLN02231	534	alanine transaminase	99.94
PLN02724	805	Molybdenum cofactor sulfurase	99.94
PRK13392	410	5-aminolevulinate synthase; Provisional	99.94
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.94
PLN02483	489	serine palmitoyltransferase	99.94
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.94
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.93
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.93
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.93
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.93
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.93
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.93
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.93
PRK13393	406	5-aminolevulinate synthase; Provisional	99.93
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.93
PLN02721	353	threonine aldolase	99.93
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.93
PTZ00376	404	aspartate aminotransferase; Provisional	99.93
PRK08354	311	putative aminotransferase; Provisional	99.93
PLN02409	401	serine--glyoxylate aminotransaminase	99.93
PRK09064	407	5-aminolevulinate synthase; Validated	99.93
PLN02368	407	alanine transaminase	99.93
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.92
PRK09275	527	aspartate aminotransferase; Provisional	99.92
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.92
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.92
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.92
PRK08637	388	hypothetical protein; Provisional	99.92
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.92
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.92
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.92
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.92
PLN02672	1082	methionine S-methyltransferase	99.92
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.92
PLN03032	374	serine decarboxylase; Provisional	99.92
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.92
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.91
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.91
PLN02822	481	serine palmitoyltransferase	99.91
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.91
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.91
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.91
PRK02769	380	histidine decarboxylase; Provisional	99.91
PLN02397	423	aspartate transaminase	99.9
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.9
PRK10534	333	L-threonine aldolase; Provisional	99.9
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.9
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.9
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.9
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.89
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.89
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.89
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.89
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.89
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.89
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.89
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.88
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.88
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.88
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.88
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.88
PLN02955	476	8-amino-7-oxononanoate synthase	99.88
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.87
PRK04311	464	selenocysteine synthase; Provisional	99.87
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.87
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.87
PRK02627	396	acetylornithine aminotransferase; Provisional	99.87
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.87
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.87
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.87
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.86
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.85
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.85
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.85
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.85
PRK07505	402	hypothetical protein; Provisional	99.85
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.84
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.84
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.84
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.83
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.83
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.83
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.83
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.83
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.82
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.82
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.82
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.82
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.81
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.81
PRK03080	378	phosphoserine aminotransferase; Provisional	99.81
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.81
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.8
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.79
PLN02624	474	ornithine-delta-aminotransferase	99.79
PLN00144	382	acetylornithine transaminase	99.79
PRK04260	375	acetylornithine aminotransferase; Provisional	99.79
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.78
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.78
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.77
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.77
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.77
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.76
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.76
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.76
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.76
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.75
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.74
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.74
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.74
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.74
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.74
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.73
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.73
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.73
PLN02271	586	serine hydroxymethyltransferase	99.73
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.73
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.72
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.72
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.71
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.7
COG4100	416	Cystathionine beta-lyase family protein involved i	99.7
PRK13237	460	tyrosine phenol-lyase; Provisional	99.7
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.7
PLN02880	490	tyrosine decarboxylase	99.7
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.69
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.69
PLN02263	470	serine decarboxylase	99.69
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.69
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.69
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.69
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.69
PRK06105	460	aminotransferase; Provisional	99.69
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.68
PRK05367	954	glycine dehydrogenase; Provisional	99.68
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.68
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.68
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.68
PRK05367	954	glycine dehydrogenase; Provisional	99.67
PRK05965	459	hypothetical protein; Provisional	99.67
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.67
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.67
PRK12403	460	putative aminotransferase; Provisional	99.67
PRK06541	460	hypothetical protein; Provisional	99.66
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.66
PRK07678	451	aminotransferase; Validated	99.66
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.66
PLN02590	539	probable tyrosine decarboxylase	99.66
PRK07481	449	hypothetical protein; Provisional	99.65
PRK06062	451	hypothetical protein; Provisional	99.65
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.65
PRK07482	461	hypothetical protein; Provisional	99.65
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.65
PRK07046	453	aminotransferase; Validated	99.64
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.64
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.63
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.63
PRK12566	954	glycine dehydrogenase; Provisional	99.63
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.63
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.63
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.63
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.62
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.62
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.62
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.62
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.61
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.61
PRK07036	466	hypothetical protein; Provisional	99.61
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.6
PRK07483	443	hypothetical protein; Provisional	99.59
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.59
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.59
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.59
PRK07480	456	putative aminotransferase; Validated	99.58
PRK06148	1013	hypothetical protein; Provisional	99.58
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.58
PRK06917	447	hypothetical protein; Provisional	99.58
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.57
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.57
PRK06149	972	hypothetical protein; Provisional	99.57
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.57
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.55
PRK15029	755	arginine decarboxylase; Provisional	99.54
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.53
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.52
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.52
PRK13578	720	ornithine decarboxylase; Provisional	99.51
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.51
PRK08297	443	L-lysine aminotransferase; Provisional	99.5
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.49
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.49
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.48
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.48
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.47
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.47
PLN02452	365	phosphoserine transaminase	99.47
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.45
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.45
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.43
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.4
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.36
PRK12462	364	phosphoserine aminotransferase; Provisional	99.35
PRK15400	714	lysine decarboxylase CadA; Provisional	99.34
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.33
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.32
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.31
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.27
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.24
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.23
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.22
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.18
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.14
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.13
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.08
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	99.05
PRK12566	954	glycine dehydrogenase; Provisional	99.02
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.0
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.88
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.81
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.71
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.59
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.58
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	98.56
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.41
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.32
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	98.22
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.07
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	97.92
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.12
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.03
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	96.95
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	95.25

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-64  Score=489.24  Aligned_cols=386  Identities=38%  Similarity=0.581  Sum_probs=351.3

Q ss_pred             CCChhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079           38 WEDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA  116 (450)
Q Consensus        38 ~~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~  116 (450)
                      .+.+.+++++ |+.....+|++++|||.++||.+++.+.....+...    ...|.|+|.+||++..|++.+|+++|++.
T Consensus         5 ~~~~~T~~v~~g~~~~~~~gav~~PI~~tStf~~~~~~~~~~~~~~~----~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~   80 (396)
T COG0626           5 KLSLTTRLVHAGRRPDDLTGAVNPPIYLTSTFVFDSAGEGLDAFAGE----EGGYDYSRTGNPTRDALEEALAELEGGED   80 (396)
T ss_pred             ccccceeeEEcccccccCCCcccCCeeeeeeecccChhhhhhhcccc----ccCcccccCCCccHHHHHHHHHHhhCCCc
Confidence            3467788888 445667899999999999999999987776666333    45699999999999999999999999999


Q ss_pred             EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      ++.++|   |+.||..++..++++||+|++++..|+++...+..++++ +|+++++++..+.+++++++..++|++|++|
T Consensus        81 ~~afsS---GmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~-~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lE  156 (396)
T COG0626          81 AFAFSS---GMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQK-FGVEVTFVDPGDDEALEAAIKEPNTKLVFLE  156 (396)
T ss_pred             EEEecC---cHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHh-cCeEEEEECCCChHHHHHHhcccCceEEEEe
Confidence            999999   999999999999999999999999999999999988888 9999999998888888888823699999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHH-HHHHHHH
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMD  274 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~-~~~~l~~  274 (450)
                      +|.||+..+.||++|+++|+++|+++|+|++| +++.++|+++|+|++++|++|+++|+++.++|+++++.+ +.+.+..
T Consensus       157 tPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~  236 (396)
T COG0626         157 TPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFF  236 (396)
T ss_pred             CCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHH
Confidence            99999999999999999999999999999999 889999999999999999999999999999998876654 4555433


Q ss_pred             HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      ...   ...|..+++..||+++++++++..|++++.+++..++++|++++.  +|.||++++||+|+++++++.   |+|
T Consensus       237 ~~~---~~~G~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~---g~g  310 (396)
T COG0626         237 AQR---ANTGAVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMT---GYG  310 (396)
T ss_pred             HHH---hhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcC---CCc
Confidence            222   158999999999999999999999999999999999999999987  899999999999999999987   699


Q ss_pred             cEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHH
Q 013079          353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW  432 (450)
Q Consensus       353 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i  432 (450)
                      ++++|++++.+.+.+|++.|+...    +++|+|+.+|++++|+.++|..++.+.+...|+++++||+|+| .|+++++|
T Consensus       311 g~~Sf~l~~~~~~~~f~~~L~l~~----~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVG-lEd~eDLi  385 (396)
T COG0626         311 GLFSFELKNEEAAKKFLDSLKLFK----LAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVG-LEDVEDLI  385 (396)
T ss_pred             eEEEEEeCChHHHHHHHHhCCccE----EeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEec-CCCHHHHH
Confidence            999999996567899999999744    7999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHh
Q 013079          433 SQFEKALSRM  442 (450)
Q Consensus       433 ~~l~~al~~~  442 (450)
                      ++|++||+++
T Consensus       386 ~Dl~~Al~~~  395 (396)
T COG0626         386 ADLEQALAKA  395 (396)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-63  Score=461.75  Aligned_cols=388  Identities=33%  Similarity=0.512  Sum_probs=353.2

Q ss_pred             CCChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           38 WEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      .+.+.+..+|+....+.+|+...|||++|+|.|++.+.....|.-+    .-++.|+|..||+.+.|+++||.++|.-..
T Consensus         5 ~~~f~T~~vHag~~d~~t~ara~PIyqtTsy~F~d~~haa~lF~l~----~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa   80 (426)
T COG2873           5 NWGFETLAVHAGQEDPTTGARAVPIYQTTSYVFDDTDHAAALFGLK----EPGNIYTRIMNPTTDVLEERIAALEGGVAA   80 (426)
T ss_pred             ccCcchhhhcCCCCCCCCCceecceeeeeeeecCCHHHHHHHhCCC----cCCceeeeccCchHHHHHHHHHHhhcchhh
Confidence            3567788888655578889999999999999999999999888755    346899999999999999999999999899


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      +.++|   |++|+..++..++++||+|+.++..|+++...+...+++ +|++++|++.+|++.++++| +++||+|++|+
T Consensus        81 ~a~aS---G~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~-~Gi~v~fvd~~d~~~~~~aI-~~nTkavf~Et  155 (426)
T COG2873          81 LAVAS---GQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKR-LGIEVRFVDPDDPENFEAAI-DENTKAVFAET  155 (426)
T ss_pred             hhhcc---chHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHh-cCcEEEEeCCCCHHHHHHHh-CcccceEEEEe
Confidence            99999   999999999999999999999999999999999888887 99999999999999999999 99999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH--HHH-----
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA--NLV-----  269 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~--~~~-----  269 (450)
                      ..||-+.+.|+++|+++||++|+++|||+++ +++.+.|.+.|+|+|++|++|++|++|..|||.++-..  ++.     
T Consensus       156 igNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rf  235 (426)
T COG2873         156 IGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRF  235 (426)
T ss_pred             ccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCC
Confidence            9999999999999999999999999999999 77889999999999999999999999999999886332  111     


Q ss_pred             ----------------H------HHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--
Q 013079          270 ----------------N------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--  325 (450)
Q Consensus       270 ----------------~------~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--  325 (450)
                                      +      -+.+.|....+..|.++++..|++.+.+++++..|++++.+++.+++++|+.||.  
T Consensus       236 P~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~  315 (426)
T COG2873         236 PEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVA  315 (426)
T ss_pred             cccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCee
Confidence                            1      0112333456789999999999999999999999999999999999999999987  


Q ss_pred             eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079          326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN  404 (450)
Q Consensus       326 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~  404 (450)
                      +|+||+++++|+|.+++++..+  |+|++++|.+++ .+...+|++.|+..-    .....|.+.|++.+|++++|+.++
T Consensus       316 ~V~YpgL~~~~~h~la~kyl~~--g~g~vltF~~kgg~ea~~~fi~~l~L~s----~laNvGD~rsLvIHPAsTTH~ql~  389 (426)
T COG2873         316 WVNYPGLASHPYHALAKKYLPK--GAGAVLTFGVKGGYEAGKKFIDALKLFS----HLANIGDARSLVIHPASTTHRQLS  389 (426)
T ss_pred             eeecCCCCCCcchhHHHhhccC--CCceEEEEEecChHHHHHHHHHHHHHHH----hhccccccceeEecCcccchhcCC
Confidence            8999999999999999999875  889999999994 478899999998633    577999999999999999999999


Q ss_pred             HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ++++.++|+.+++||+|+| .|+++|++.+|++||++
T Consensus       390 ~ee~~~aGv~~~~IRlSVG-IEd~~DiiaDl~qAl~~  425 (426)
T COG2873         390 EEEQAAAGVTPDLIRLSVG-IEDIDDIIADLEQALEA  425 (426)
T ss_pred             HHHHHhcCCCCCcEEEEec-cCCHHHHHHHHHHHHhc
Confidence            9999999999999999999 99999999999999975

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=4.7e-62  Score=481.89  Aligned_cols=376  Identities=41%  Similarity=0.645  Sum_probs=323.2

Q ss_pred             HHHhh-cCCCC-CCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEe
Q 013079           43 AALAS-ARHEF-GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT  120 (450)
Q Consensus        43 ~~~~~-~~~~~-~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~t  120 (450)
                      |+++| |++.. ..+++++|||+.|+||.+++.+++ +.+.+.    ...|.|+|.++|++..++++||+++|++.++++
T Consensus         2 T~~vh~g~~~~~~~~~~v~~pi~~sstf~~~~~~~~-~~~~~~----~~~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~   76 (386)
T PF01053_consen    2 TLLVHAGRDPDEDQTGAVNPPIYQSSTFVFDSAEEL-DAFAGE----EKGYIYSRYGNPTVRALEQRLAALEGGEDALLF   76 (386)
T ss_dssp             HHHHHTTTTGGTSTTTBSS--B---SBBBBSSHHHH-HHHTTS----SSSCSBTTTC-HHHHHHHHHHHHHHT-SEEEEE
T ss_pred             cceEeCCCCCCCCCCCCeeCCccccccCcccchHHH-HhhcCC----CCCcceeccccccHHHHHHHHHHhhcccceeec
Confidence            44555 55544 478999999999999999999888 666554    445999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCC
Q 013079          121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN  200 (450)
Q Consensus       121 sg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~N  200 (450)
                      +|   |+.|+.+++.+++++||+|+++...|+++...++.++++ .|+++.+++..|++++++++ +++|++|++|+|.|
T Consensus        77 ~S---GmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~-~gv~v~~~d~~d~~~l~~~l-~~~t~~v~~EspsN  151 (386)
T PF01053_consen   77 SS---GMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPR-FGVEVTFVDPTDLEALEAAL-RPNTKLVFLESPSN  151 (386)
T ss_dssp             SS---HHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHH-TTSEEEEESTTSHHHHHHHH-CTTEEEEEEESSBT
T ss_pred             cc---hHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcc-cCcEEEEeCchhHHHHHhhc-cccceEEEEEcCCC
Confidence            99   999999999999999999999999999999999877776 89999999999999999999 88999999999999


Q ss_pred             CcccccCHHHHHHHHHhcC-CEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC--HHHHHHHHHHh
Q 013079          201 PTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANLVNSMMDLH  276 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~g-i~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~--~~~~~~l~~~~  276 (450)
                      |+..+.|+++|+++|+++| ++++||+++ +++.++|+++|+|++++|++|+++|+++.+||+++.+  .++.+.++..+
T Consensus       152 P~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~  231 (386)
T PF01053_consen  152 PTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR  231 (386)
T ss_dssp             TTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHhCCceEEeeccccceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh
Confidence            9999999999999999998 999999999 7888999999999999999999999999999999865  47778887766


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .    ..|..+++..|+++.++++++..|++++.+++..++++|++++.  +|.||+++++|+|+++++++.   |+|++
T Consensus       232 ~----~~G~~~~p~da~ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---g~ggl  304 (386)
T PF01053_consen  232 R----LLGATLSPFDAWLLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMS---GGGGL  304 (386)
T ss_dssp             H----HHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCS---SCTSE
T ss_pred             h----hcCccchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeeccc---ccCce
Confidence            6    78999999999999999999999999999999999999999987  899999999999999999987   78889


Q ss_pred             EEEEeCCHH-HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          355 LCLDMETEE-KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       355 ~~~~l~~~~-~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      ++|++++.. .+.+|++.|+...    +++|+|+.+|++++|...+|..++++.+..+|+++++||||+| +|+++|+|+
T Consensus       305 ~sf~l~~~~~~~~~f~~~l~l~~----~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG-lEd~~dLi~  379 (386)
T PF01053_consen  305 LSFELKGGEEAARRFLDALKLFS----IAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG-LEDPDDLIA  379 (386)
T ss_dssp             EEEEESSHHHHHHHHHHH-SSSE----ESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE---SS-HHHHHH
T ss_pred             eEEEeccchhhhHhHHhhhhhHh----hhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEec-cCCHHHHHH
Confidence            999999764 7899999999733    7999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHH
Q 013079          434 QFEKALS  440 (450)
Q Consensus       434 ~l~~al~  440 (450)
                      +|.+||+
T Consensus       380 Dl~~AL~  386 (386)
T PF01053_consen  380 DLEQALE  386 (386)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhcC
Confidence            9999985

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PLN02242 methionine gamma-lyase

Probab=100.00  E-value=5.5e-61  Score=482.64  Aligned_cols=403  Identities=86%  Similarity=1.304  Sum_probs=358.1

Q ss_pred             CCCCChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC
Q 013079           36 AAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE  115 (450)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~  115 (450)
                      .++.||...++|..+....+++++||||+|+||.+++.+.+.+++.+..+.+...|.|+|..+|++++|++.+|+++|.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~   92 (418)
T PLN02242         13 SKEEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTE   92 (418)
T ss_pred             hcCCChHHHHhcCCCCCCCCCCccCCcccCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCC
Confidence            45678999999987776666888999999999999999888888865433222358999999999999999999999999


Q ss_pred             eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC-CceEEE
Q 013079          116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-RTKVLY  194 (450)
Q Consensus       116 ~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~-~t~lv~  194 (450)
                      .+++|+|   |++|+.+++.+++++||+|+++.+.|+++...+...+.+..|+++++++..|++++++++ ++ +|++|+
T Consensus        93 ~~l~~~s---G~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i-~~~~tklV~  168 (418)
T PLN02242         93 AAYCTAS---GMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAV-VPGKTKVLY  168 (418)
T ss_pred             eEEEEcc---HHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhc-CcCCCEEEE
Confidence            9999999   999999999999999999999999999998877555544479999999988999999999 76 599999


Q ss_pred             EecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          195 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       195 i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                      +++|+||||.+.|+++|+++|+++|+++|+|++|..+.+++..+|+|++++|+||+++++|+++||++++++++++.++.
T Consensus       169 lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~  248 (418)
T PLN02242        169 FESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMD  248 (418)
T ss_pred             EecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHH
Confidence            99999999999999999999999999999999997777788888999999999999999999888999999999888876


Q ss_pred             HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .+.+.....|..+.++.|++.++.++++..|++++.+++++++++|++++.+|.+|+++++|+|++++++++...|+|++
T Consensus       249 ~~~~~~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~  328 (418)
T PLN02242        249 LHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGL  328 (418)
T ss_pred             HhhhhhhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeE
Confidence            64421235677888889999888999999999999999999999999998899999999999999999998655689999


Q ss_pred             EEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC-HHHHHH
Q 013079          355 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT-LDQRWS  433 (450)
Q Consensus       355 ~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~i~  433 (450)
                      ++|++++.+.+.+|++.++....+..+++|+|+++|++++|++++|..++++.+...|+++++||||+| .|+ .+|+|+
T Consensus       329 ~sf~l~~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-lE~~~~dli~  407 (418)
T PLN02242        329 LCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVG-YTGTLEQRWS  407 (418)
T ss_pred             EEEEECCHHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-CCCCHHHHHH
Confidence            999999878899999999863222237999999999999999999999999999999999999999999 995 999999


Q ss_pred             HHHHHHHHhh
Q 013079          434 QFEKALSRMQ  443 (450)
Q Consensus       434 ~l~~al~~~~  443 (450)
                      +|++||++++
T Consensus       408 dl~~al~~~~  417 (418)
T PLN02242        408 QFEKALSAMK  417 (418)
T ss_pred             HHHHHHHHhh
Confidence            9999999874

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=1.2e-59  Score=467.75  Aligned_cols=375  Identities=29%  Similarity=0.425  Sum_probs=335.2

Q ss_pred             hhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.+.++|.. .....+++++||||+++||.+++..        .    ...|.|+|+++|+.+.|+++||+++|++.+++
T Consensus         6 ~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~--------~----~~~~~Y~R~~npt~~~Le~~lA~leg~e~ivv   73 (388)
T PRK08861          6 PATIAVRTGIESDSQYHAVVPPIYLSTNYGFPAFG--------E----VPKYDYTRSGNPNRGLLEQTLSELESGKGAVV   73 (388)
T ss_pred             cccceeECCCCCCCCCCCccCCcccCcceEeCCcC--------c----cCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Confidence            445555533 3334468999999999999998731        1    23588999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      |+|   |++|+++++.+++++||+|+++.+.|++....+.....+ .|+++.+++..|++++++++ +++|++|++++|+
T Consensus        74 t~g---g~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~-~gi~v~~vd~~d~e~l~~~i-~~~tklV~lesP~  148 (388)
T PRK08861         74 TNC---GTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANK-GDFKVQFVDQSDAAALDAAL-AKKPKLILLETPS  148 (388)
T ss_pred             ECC---HHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhc-CcCCeEEEEECCC
Confidence            999   999999999999999999999999999877766544444 68999999888999999999 7899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQ  277 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~  277 (450)
                      ||||.+.|+++|.++|+++|+++|+|++| .++...|.++|+|++++|+||+++++++.+||+++. ++++.++++..+.
T Consensus       149 NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~  228 (388)
T PRK08861        149 NPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGN  228 (388)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHh
Confidence            99999999999999999999999999999 566678888999999999999999988777898876 4567777776665


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|..+++..+++++++++++..|++++.+++..++++|+++|.  +|.||+++++|+|+++++++.   |+|+++
T Consensus       229 ----~~G~~~~p~~a~l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~---g~gg~~  301 (388)
T PRK08861        229 ----CIGATGTPFDSYMTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQS---GFGSML  301 (388)
T ss_pred             ----ccCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCC---CCCceE
Confidence                67999999999999999999999999999999999999999987  899999999999999999885   799999


Q ss_pred             EEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          356 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       356 ~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+|+|++
T Consensus       302 sf~~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvG-lE~~~dli~D  376 (388)
T PRK08861        302 SFEFAGSFEQLKVFVKALALFS----LAESLGGVESLICHPASMTHRAMGEEALAEAGVSQQLLRLSVG-LEDAQDLIAD  376 (388)
T ss_pred             EEEeCCCHHHHHHHHhcCCcce----EccCCCCCcceeeCCCcccccccCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHH
Confidence            99997 4677889999999743    7999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHhhh
Q 013079          435 FEKALSRMQD  444 (450)
Q Consensus       435 l~~al~~~~~  444 (450)
                      |++||+++.+
T Consensus       377 l~~al~~~~~  386 (388)
T PRK08861        377 LDQAFAKAAE  386 (388)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=3.9e-59  Score=467.21  Aligned_cols=384  Identities=33%  Similarity=0.570  Sum_probs=343.6

Q ss_pred             ChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.+.++|.. .....++++.||||.++||.+++.+++.+.+.+.    ...|.|+|+.+|+++++++.||+++|++.++
T Consensus         8 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i   83 (398)
T PRK08249          8 GVGTKAVWAGEKEYLPYGATQVPVVLSVAYGYDDIDEWYDVALGK----KPGHIYSRNTNPTVQAFEEKVRILEGAEAAT   83 (398)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccCCcceecCCHHHHHHhhcCC----cCCccccCCCChHHHHHHHHHHHHhCCCeEE
Confidence            3555566643 3334568999999999999999988777766543    2458999999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |++|+.+++.+++++||+|+++.+.|+++...+...+++ .|+++.+++..|++++++++ +++|++|++++|
T Consensus        84 ~~ss---G~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~-~Gi~v~~vd~~d~e~l~~~i-~~~tklV~ie~p  158 (398)
T PRK08249         84 AFST---GMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPR-MGVDVTLCETGDHEQIEAEI-AKGCDLLYLETP  158 (398)
T ss_pred             EeCC---hHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhh-CCeEEEEcCCCCHHHHHHhc-CCCCeEEEEECC
Confidence            9999   999999999999999999999999999988777655555 79999999988999999999 889999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ  277 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~  277 (450)
                      +||||.+.|+++|.++|+++|+++|+|++| .++...+...++|++++|+||+++++|+++||++++++++++.++..+.
T Consensus       159 ~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~  238 (398)
T PRK08249        159 TNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPLALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE  238 (398)
T ss_pred             CCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCchhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHH
Confidence            999999999999999999999999999999 4555566677999999999999999998888999999999888877665


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|..+++..+++++++++++..|++++.+++..+.++|++++.  +|.||+++++|+|+++++++.   |+|+++
T Consensus       239 ----~~g~~~s~~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~  311 (398)
T PRK08249        239 ----INGATMDPMSAYLILRGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMR---GFGGIL  311 (398)
T ss_pred             ----hcCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCceE
Confidence                57788899999999999999999999999999999999999986  899999999999999999985   799999


Q ss_pred             EEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          356 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       356 ~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+|+|++
T Consensus       312 sf~~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~d  386 (398)
T PRK08249        312 SFVLKGGMDTVKRLLPKLRYAH----RAANLGAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVG-IEDTEDLIAD  386 (398)
T ss_pred             EEEEcCCHHHHHHHHHhCCcce----EccCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHH
Confidence            99997 5566889999999743    7999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHhhh
Q 013079          435 FEKALSRMQD  444 (450)
Q Consensus       435 l~~al~~~~~  444 (450)
                      |.+||+.+..
T Consensus       387 l~~al~~~~~  396 (398)
T PRK08249        387 LEQAFAHLES  396 (398)
T ss_pred             HHHHHHHhhh
Confidence            9999998754

>PRK08114 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=3e-59  Score=462.71  Aligned_cols=378  Identities=21%  Similarity=0.362  Sum_probs=332.4

Q ss_pred             hhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.+.++| +......+|+++||||.++||.+++.+++.+.+.+.   ....|.|+|.+||+++.|+++||+++|++.+++
T Consensus         6 ~~t~~~~~~~~~~~~~~~v~~pi~~sstf~f~~~~~~~~~~~~~---~~~~~~YsR~~nPt~~~le~~la~LEg~~~a~~   82 (395)
T PRK08114          6 LDTQLVNAGRSKKYTQGSVNSVIQRASSLVFDSVEAKKHATRNR---ANGELFYGRRGTLTHFSLQEAMCELEGGAGCAL   82 (395)
T ss_pred             cchheEeCCCCCCCCCCCccCCeeCCCceecCCHHHHHHhhccC---cCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Confidence            4455555 432333458999999999999999998888777543   123589999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   ||+|+++++.+++++||+|++++..|+++...+...+++ .|+++.+++..|.+++++++ +++|++|++++|+
T Consensus        83 ~~S---GmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~-~Gi~v~~vd~~d~~~l~~~l-~~~TrlV~~Etps  157 (395)
T PRK08114         83 YPC---GAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSK-LGVTTTWFDPLIGADIAKLI-QPNTKVVFLESPG  157 (395)
T ss_pred             EhH---HHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CCCceEEEEECCC
Confidence            999   999999999999999999999999999999988777776 89999999988999999999 8899999999999


Q ss_pred             CCcccccCHHHHHHHHHhc--CCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh
Q 013079          200 NPTLAVANIPELSRLAHDK--GVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH  276 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~--gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~  276 (450)
                      ||+|.+.|+++|+++||++  |++++||++| .++.++|.++|+|++++|+||+++++++.++|+++.+++.++.++..+
T Consensus       158 Np~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~  237 (395)
T PRK08114        158 SITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS  237 (395)
T ss_pred             CCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH
Confidence            9999999999999999998  4999999999 777799999999999999999999999999998888887777666554


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .    ..|..+++..|+++.++++++..|++++.+++..++++|+++|.  +|.||+++++|+|+++++++.   |+|++
T Consensus       238 ~----~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~---g~gg~  310 (395)
T PRK08114        238 Y----LMGQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFT---GSSGL  310 (395)
T ss_pred             H----hccCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCC---CCceE
Confidence            4    67999999999999999999999999999999999999999987  899999999999999999986   78999


Q ss_pred             EEEEeCC---HHHHHHHHHHhhccccccccccccccccccccc--cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013079          355 LCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC--SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD  429 (450)
Q Consensus       355 ~~~~l~~---~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~--~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~  429 (450)
                      ++|++++   .+.+.+|++.|+...    +++|+|+.+|++++  |...++.. +++   ..++.+++||||+| .|+.+
T Consensus       311 ~sf~l~~~~~~~~~~~f~~~l~l~~----~a~SlGg~~SLi~~~~~~~~~~~~-~~~---~~~~~~~liRlSvG-lEd~~  381 (395)
T PRK08114        311 FSFVLKKKLTDEQLANYLDNFSLFS----MAYSWGGFESLILANQPEEIAAIR-PAG---EVDFTGTLIRLHIG-LEDVD  381 (395)
T ss_pred             EEEEecCcccHHHHHHHHHhCCcce----eecccCCccceeccCCchhhhccC-Chh---HhcCCCCeEEEEec-cCCHH
Confidence            9999974   567889999998743    79999999999984  44444333 322   34677799999999 99999


Q ss_pred             HHHHHHHHHHHHh
Q 013079          430 QRWSQFEKALSRM  442 (450)
Q Consensus       430 ~~i~~l~~al~~~  442 (450)
                      ++|++|.+||+++
T Consensus       382 DLi~Dl~~Al~~~  394 (395)
T PRK08114        382 DLIADLAAGFARI  394 (395)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999865

>PRK09028 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=3.4e-59  Score=463.80  Aligned_cols=381  Identities=25%  Similarity=0.386  Sum_probs=335.6

Q ss_pred             hhHHHhhcCC-CCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALASARH-EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~~~~-~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      |.+.++|... ....+|+++|||+.++||.++..+.+...+.+..   ...|.|+|..+|+...||+.||++++++.+++
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~---~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~   81 (394)
T PRK09028          5 KATKIVSAGRDKKWTKGVINPPVFRASTVVFDTVAEMRHAAKNRA---NGEMFYGRRGTPTHFAFQAAIVELEGGAGTAL   81 (394)
T ss_pred             ccceeEEcCCCCCCCCCCccCCeeCCCCcccCCHHHHHHHhccCc---cCCceecCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            4455556433 2233589999999999999999888887775432   13488999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      |+|   |++|+++++.+++++||+||++++.|+++...+...+.+ .|+++.+++..+.+++++++ +++|++|++++|+
T Consensus        82 ~~s---G~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~-~Gi~v~~v~~~~~e~l~~~l-~~~TklV~lesps  156 (394)
T PRK09028         82 YPS---GAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKG-FGIETTYYDPMIGEGIRELI-RPNTKVLFLESPG  156 (394)
T ss_pred             ECC---HHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhh-cceEEEEECCCCHHHHHHhc-CcCceEEEEECCC
Confidence            999   999999999999999999999999999998877655665 89999999887888999999 8899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG  278 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~  278 (450)
                      ||||.+.|+++|+++|+++|+++++|++| .++.++|.++|+|++++|+||+++|+++.++|+++.++++++.+...+. 
T Consensus       157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~-  235 (394)
T PRK09028        157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSY-  235 (394)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHH-
Confidence            99999999999999999999999999999 7777899999999999999999999999999998888877777765554 


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                         ..|..+++..|+++.++++++..|++++.+++..++++|++++.  +|.||+++++|+|+++++++.   |+|++++
T Consensus       236 ---~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~---g~gg~~s  309 (394)
T PRK09028        236 ---LMGQCTSPDDVYLAMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFS---GSNGLFS  309 (394)
T ss_pred             ---hcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhcc---CCCceEE
Confidence               67899999999999999999999999999999999999999986  899999999999999999986   7899999


Q ss_pred             EEeC--CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          357 LDME--TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       357 ~~l~--~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      |+++  +.+.+.+|++.|+...    +++|+|+.+|++.+|+++++...    ....++.+++||||+| .|+.+|+|++
T Consensus       310 f~l~~~~~~~~~~f~~~l~l~~----~~~slG~~~sLv~~p~~~~~~~~----~~~~~~~~~liR~svG-lEd~~dLi~D  380 (394)
T PRK09028        310 FVLKQGDPKAVTALVEGMQHFK----MGFSWGGFESLILGVFGINKLRT----ATNWDFSKPLIRLHIG-LEDVDDLIAD  380 (394)
T ss_pred             EEECCCCHHHHHHHHHhCCcce----EecccCCCcceeECCCCcCccCc----hhhhcCCCCeEEEEeC-cCCHHHHHHH
Confidence            9997  4567889999999643    79999999999999987764433    2236788899999999 9999999999


Q ss_pred             HHHHHHHhhhc
Q 013079          435 FEKALSRMQDS  445 (450)
Q Consensus       435 l~~al~~~~~~  445 (450)
                      |.+||++.+.+
T Consensus       381 l~~Al~~~~~~  391 (394)
T PRK09028        381 LEAGFERYNAV  391 (394)
T ss_pred             HHHHHHHHHHH
Confidence            99999987643

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=9.7e-59  Score=464.17  Aligned_cols=391  Identities=28%  Similarity=0.426  Sum_probs=341.1

Q ss_pred             CChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++|.+.++|.......+|+++|||+.+|||.+++.+.+...+...    .++|.|+|.++|+++.|++.||+++|++.++
T Consensus         5 ~~~~t~~~~~g~~~~~~~~~~~PI~~sst~~f~~~~~~~~~~~~~----~~g~~ysR~~nPtv~~lE~~la~leg~~~av   80 (432)
T PRK06702          5 WGKGTICVQGGYTPKNGEPRVLPLYQSTTYKYDTSDDLAALFNLE----AEGYIYTRIGNPTLAAFEQKLAELEGGVGAV   80 (432)
T ss_pred             CCcchHheeCCCCCCCCCCccCCccCCcceecCCHHHHHHHHhcc----ccCceeECCCCcHHHHHHHHHHHHhCCCcEE
Confidence            457777777442233478999999999999999988777766533    2458899999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-CHHHHHHhhhcCCceEEEEec
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-DHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      +|+|   ||+|+.+++.+++++||+||++.+.|.++...+...+.+ .|+++++++.. |+++++++| +++|++|++++
T Consensus        81 ~~~S---G~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~-~Gi~v~~vd~~~d~~~l~~~I-~~~Tk~I~~e~  155 (432)
T PRK06702         81 ATAS---GQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRK-LGIDVTFFNPNLTADEIVALA-NDKTKLVYAES  155 (432)
T ss_pred             EECC---HHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHhC-CcCCeEEEEEc
Confidence            9999   999999999999999999999999999998886655555 89999999984 999999999 88999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHH---------
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN---------  267 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~---------  267 (450)
                      |+||++.+.|+++|+++|+++|+++++|++| .++.++|.++|+|++++|+||+++++++.+||+++....         
T Consensus       156 pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~  235 (432)
T PRK06702        156 LGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYP  235 (432)
T ss_pred             CCCccccccCHHHHHHHHHHcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeCCCccccccccc
Confidence            9999999999999999999999999999999 788889999999999999999999999999998873221         


Q ss_pred             -HHH-----------------H-HHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--e
Q 013079          268 -LVN-----------------S-MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--K  326 (450)
Q Consensus       268 -~~~-----------------~-l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~  326 (450)
                       ++.                 . +...+.......|..+++..+++++++++++..|++++.+++..++++|++++.  +
T Consensus       236 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~  315 (432)
T PRK06702        236 ELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGLETLHLRMERHSENALAVAKWLADHERIEW  315 (432)
T ss_pred             ccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcce
Confidence             110                 0 101111122356789999999999999999999999999999999999999986  7


Q ss_pred             eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCH
Q 013079          327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA  405 (450)
Q Consensus       327 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~  405 (450)
                      |.||+++++|+|++++++++.  |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++.+|++++|..++.
T Consensus       316 V~yPgl~~~p~~~l~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~a~slGg~~Slv~~p~~~th~~~~~  389 (432)
T PRK06702        316 VNYPGLDSNENYSLAQKYLKK--GASGVLTFGIKGGLEAAKEFIANVKLAT----LVTHVADARTCVIHPASTTHRQLSA  389 (432)
T ss_pred             EECCCCCCCccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCccce----eccccCCCCcceECCCCCCcccCCH
Confidence            999999999999999999853  78999999997 5677889999999743    8999999999999999999999999


Q ss_pred             HHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          406 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       406 ~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      +.+...|+++++||||+| .|+.+|++++|++||+.=++.
T Consensus       390 ~~~~~~Gi~~~liRlSvG-lEd~eDLi~Dl~~Al~~~~~~  428 (432)
T PRK06702        390 EDQRLAGVTSDLIRLSVG-IEDVSDIIADLEAALVGGKQH  428 (432)
T ss_pred             HHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhcCccc
Confidence            999999999999999999 999999999999999865443

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.5e-58  Score=464.50  Aligned_cols=396  Identities=30%  Similarity=0.478  Sum_probs=344.3

Q ss_pred             ccCCCCChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh
Q 013079           34 TAAAWEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE  112 (450)
Q Consensus        34 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~  112 (450)
                      +|.+..++.+.++|.. .....+|+++|||+.++||.+++.+++.+.+...    ...|.|+|..+|+++++++.+|+++
T Consensus         2 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~----~~~~~y~R~~~p~~~~le~~lA~l~   77 (433)
T PRK08134          2 PGMSPPGFDTLALHAGAAPDPATGARAVPIHLTTSFVFRDSDHAAALFNLE----RAGHVYSRISNPTVAVLEERVAALE   77 (433)
T ss_pred             CCCCCCCcchhheeCCCCCCCCCCCccCCccCCCccccCCHHHHHHhhccc----ccCceeecCcChHHHHHHHHHHHHh
Confidence            4556667777777754 3345578999999999999999998888776543    2468999999999999999999999


Q ss_pred             CCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceE
Q 013079          113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKV  192 (450)
Q Consensus       113 g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~l  192 (450)
                      |++.+++|+|   ||+|+++++.+++++||+||++..+|+++...+...+.+ .|+++++++.+|++++++++ +++|++
T Consensus        78 g~~~av~~sS---Gt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~~d~~~l~~~i-~~~Tkl  152 (433)
T PRK08134         78 GGVGAIATAS---GQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRR-FGIETTFVKPGDIDGWRAAI-RPNTRL  152 (433)
T ss_pred             CCCcEEEeCC---HHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhh-CCeEEEEECCCCHHHHHHhc-CCCCeE
Confidence            9999999999   999999999999999999999999999988877655555 79999999998999999999 889999


Q ss_pred             EEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH---
Q 013079          193 LYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL---  268 (450)
Q Consensus       193 v~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~---  268 (450)
                      |++++++||+|.+.|+++|+++|+++|+++|+|++| .+....+.++|+|++++|+||+++++|+.+||+++....+   
T Consensus       153 V~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~  232 (433)
T PRK08134        153 LFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHSATKFLGGHGTAIGGVLVDGGRFDWE  232 (433)
T ss_pred             EEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEeccccccCCCCCceEEEEEecCccccc
Confidence            999999999999999999999999999999999999 6666778888999999999999999999998877642110   


Q ss_pred             --------HH-----------------H-HHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          269 --------VN-----------------S-MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       269 --------~~-----------------~-l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                              ..                 . +...+.......|..+++..|++++++++++..|++++.+++..++++|++
T Consensus       233 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL~tl~~R~~~~~~nA~~la~~L~~  312 (433)
T PRK08134        233 ASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGIETLPLRMERHVANTRKVVAFLAS  312 (433)
T ss_pred             cccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence                    00                 0 011111122356888999999999999999999999999999999999999


Q ss_pred             CCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccccccccccccccc
Q 013079          323 LGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST  399 (450)
Q Consensus       323 ~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~  399 (450)
                      ++.  +|.||+++++|+|++++++++.  |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++
T Consensus       313 ~p~V~~V~yP~l~~~p~~~~~~~~~~~--g~gg~~s~~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sL~~~p~~~~  386 (433)
T PRK08134        313 HPAVARVAHPELESHPDHALAKRLLPR--GAGSVFSFDLKGGRAAGRKFIESLKLFS----HLANVGDARSLVIHPASTT  386 (433)
T ss_pred             CCCccEEECCCCCCCccHHHHHHhCCC--CCceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCCceeeCCCccC
Confidence            986  8999999999999999998742  78999999997 5567889999999743    7999999999999999999


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          400 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       400 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      |..++++.++.+|+++++||||+| +|+.+++|++|.+||++++..
T Consensus       387 h~~~~~~~~~~~Gi~~~liRlsvG-lE~~~dli~dl~~Al~~~~~~  431 (433)
T PRK08134        387 HFRMDAAALAAAGIGEGTIRLSIG-LEDADDLIDDLKRALKAAEKA  431 (433)
T ss_pred             cccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999 999999999999999987643

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=4.5e-58  Score=462.82  Aligned_cols=388  Identities=32%  Similarity=0.515  Sum_probs=338.5

Q ss_pred             ChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.+.++|.. .....+|++.+|||.++||.+++.+++.+.+...    ...|.|+|..+|+.+.|++.||+++|++.++
T Consensus         8 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~Le~~lA~leg~~~al   83 (431)
T PRK08248          8 RLETLAIHAGQEIDPTTGSRAVPIYQTTSYGFRDSEHAANLFSLK----EFGNIYTRIMNPTTDVFEKRIAALEGGIGAL   83 (431)
T ss_pred             CcchhheeCCcCCCCCCCCccCCeeCCCccccCCHHHHHhhhccc----cCCceeECCCCchHHHHHHHHHHHhCCCcEE
Confidence            4556666643 3334578999999999999999998888776543    2358899999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +|+|   |++|+.+++..++++||+|+++.+.|+++...+...+.+ .|+++++++..|++++++++ ++++++|++++|
T Consensus        84 ~~~s---G~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~-~Gv~v~~vd~~d~e~l~~ai-~~~tklV~l~sp  158 (431)
T PRK08248         84 AVSS---GQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPK-LGITVKFVDPSDPENFEAAI-TDKTKALFAETI  158 (431)
T ss_pred             EECC---HHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHh-CCEEEEEECCCCHHHHHHhc-CCCCeEEEEECC
Confidence            9999   999999999999999999999999999888777655555 79999999999999999999 789999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHH--------
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV--------  269 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~--------  269 (450)
                      +||||.+.|+++|+++|+++|+++|+|++| .++...+.++|+|++++|+||+++++|+++||+++.+.+..        
T Consensus       159 ~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~  238 (431)
T PRK08248        159 GNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFP  238 (431)
T ss_pred             CCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccc
Confidence            999999999999999999999999999999 55666777889999999999999999999988777543210        


Q ss_pred             ---------------HHH------HHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--e
Q 013079          270 ---------------NSM------MDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--K  326 (450)
Q Consensus       270 ---------------~~l------~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~  326 (450)
                                     +.+      ...+.......|..+++..|++++++++++..|++++.+++..++++|++++.  +
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~  318 (431)
T PRK08248        239 GLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQGLETLHLRMERHSENALAVAKFLEEHEAVEW  318 (431)
T ss_pred             cccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcce
Confidence                           100      01111122367899999999999999999999999999999999999999986  8


Q ss_pred             eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCH
Q 013079          327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA  405 (450)
Q Consensus       327 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~  405 (450)
                      |.||+++++|+|+++++++++  |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..+++
T Consensus       319 V~yPgl~s~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~  392 (431)
T PRK08248        319 VSYPGLPSHPSYELAKKYLPK--GQGAILTFGIKGGVEAGKKLIDSVKLFS----HLANVGDSKSLIIHPASTTHQQLSE  392 (431)
T ss_pred             EECCCCCCCccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCCeeeeCCCcCccccCCH
Confidence            999999999999999998853  68999999997 5567889999999743    7999999999999999999999999


Q ss_pred             HHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          406 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       406 ~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      +++..+|+++++||||+| +|+.+|++++|++||++++
T Consensus       393 ~~~~~~gi~~~liRlsvG-lEd~~dL~~Dl~~Al~~~~  429 (431)
T PRK08248        393 EEQLAAGVTPGLVRLSVG-TEAIDDILDDLRQAIRQSQ  429 (431)
T ss_pred             HHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999 9999999999999999765

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=100.00  E-value=1e-57  Score=456.69  Aligned_cols=383  Identities=37%  Similarity=0.581  Sum_probs=339.0

Q ss_pred             hhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.+.++|.. .....+|+++||||.++||.+++.+.+.+.|.+.    ...|.|+|+++|++++|+++||+++|.+.+++
T Consensus         4 ~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~av~   79 (391)
T TIGR01328         4 FATRAIHAGYPPKDQFGALTPPIYQTSTFVFDSCEQGGNRFAGQ----ESGYIYSRLGNPTVSNLEGRIAFLEGTEAAVA   79 (391)
T ss_pred             cccceeeCCccCCCCCCCccCCcccCcceecCChHHHHHhhcCC----cCCCceeCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            445555533 3334578999999999999999988888877543    24689999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   |++|+.+++.+++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ +++|++|++++|+
T Consensus        80 ~~s---G~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~-~G~~~~~vd~~d~e~l~~~i-~~~tklV~le~p~  154 (391)
T TIGR01328        80 TSS---GMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTK-FGIQVDFINMAIPEEVKAHI-KDNTKIVYFETPA  154 (391)
T ss_pred             ECC---HHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhh-ccCCeEEEEECCC
Confidence            999   999999999999999999999999999887777655554 79999999999999999999 8899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG  278 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~  278 (450)
                      ||+|.+.|+++|.++|+++|+++|+|++| .++...+...++|++++|++|+++++|+++||++++++++++.++.....
T Consensus       155 Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~  234 (391)
T TIGR01328       155 NPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPVALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIK  234 (391)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCchhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 45555677779999999999999999998889999999988887654321


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                        ...|..+++..|++++++++++..|++++.++++.+.++|++++.  +|.||+++++|+|++++++++   |+|++++
T Consensus       235 --~~~g~~l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~---~~g~~~s  309 (391)
T TIGR01328       235 --DMTGSVISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMR---MGGGMIT  309 (391)
T ss_pred             --hCCCCCCCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCCceEE
Confidence              134667888888888889999999999999999999999999975  899999999999999999986   7899999


Q ss_pred             EEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          357 LDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       357 ~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      |+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+...|+++++||||+| +|+.++++++|
T Consensus       310 ~~~~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl  384 (391)
T TIGR01328       310 FELKGGFAGAKKLLNNLKLIR----LAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-LEDADDLIADL  384 (391)
T ss_pred             EEeCCCHHHHHHHHHhCCcce----EecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHH
Confidence            9997 5567889999999743    7999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHh
Q 013079          436 EKALSRM  442 (450)
Q Consensus       436 ~~al~~~  442 (450)
                      ++||.++
T Consensus       385 ~~al~~~  391 (391)
T TIGR01328       385 KQALDAL  391 (391)
T ss_pred             HHHHhhC
Confidence            9999864

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=100.00  E-value=1.3e-57  Score=455.98  Aligned_cols=381  Identities=34%  Similarity=0.564  Sum_probs=337.5

Q ss_pred             CChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      +++.+.++|.......++++.+|||.++||.+++.+++...+.+.    ...+.|+|+.+|+++++++++|+++|++.++
T Consensus         5 ~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~la~l~g~~~~v   80 (390)
T PRK08133          5 LGFDTLAVRAGQLRSPFGEHSEALFLTSSFVFESAAEAAARFAGE----EPGNIYSRFTNPTVTMFQERLAALEGAEACV   80 (390)
T ss_pred             CCcchhheeCCCCCCCCCCccCCccCCCCcccCCHHHHHHhhcCC----cCCceeECCCChHHHHHHHHHHHHhCCCcEE
Confidence            346666677543334578899999999999999876665555332    2347799999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +|+|   |++|+.+++.+++++||+||++++.|+++...+...... .|+++++++.+|++++++++ +++|++|++++|
T Consensus        81 ~~ss---G~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklV~ie~p  155 (390)
T PRK08133         81 ATAS---GMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFAR-FGIETTFVDLTDLDAWRAAV-RPNTKLFFLETP  155 (390)
T ss_pred             EECC---HHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECC
Confidence            9999   999999999999999999999999999988776555554 79999999999999999999 889999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ  277 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~  277 (450)
                      +||+|.+.|+++|+++|+++|+++|+|++| .+....+...|+|++++|+||+++++|+++||+++.++++++++.....
T Consensus       156 ~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~  235 (390)
T PRK08133        156 SNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPLKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLR  235 (390)
T ss_pred             CCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHH
Confidence            999999999999999999999999999998 5555677778999999999999999999998999998888777765444


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|..+++..++.++++++++..|++++.+++..+.++|++++.  ++.||+++++|+|+++++++.   |+|+++
T Consensus       236 ----~~g~~~~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---g~g~~~  308 (390)
T PRK08133        236 ----TAGPTLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQK---GGGAIV  308 (390)
T ss_pred             ----HhCCCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCC---CCceEE
Confidence                56778888889898899999999999999999999999999975  899999999999999999875   799999


Q ss_pred             EEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          356 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       356 ~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+++|++
T Consensus       309 s~~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~d  383 (390)
T PRK08133        309 SFEVKGGREAAWRVIDATRLIS----ITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVG-LEDVADIKAD  383 (390)
T ss_pred             EEEEcCCHHHHHHHHHhCCcce----EeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHH
Confidence            99997 5667889999999743    7999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHH
Q 013079          435 FEKALS  440 (450)
Q Consensus       435 l~~al~  440 (450)
                      |++||+
T Consensus       384 l~~al~  389 (390)
T PRK08133        384 LARGLA  389 (390)
T ss_pred             HHHHhh
Confidence            999986

>PRK05967 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1e-57  Score=452.38  Aligned_cols=375  Identities=24%  Similarity=0.401  Sum_probs=330.6

Q ss_pred             CCChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079           38 WEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA  116 (450)
Q Consensus        38 ~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~  116 (450)
                      .+++.+.++|+. .....+|++.|||+++|||.+++.+++..    .    ...|.|+|.++|+++.|++.|+.+++.+.
T Consensus        10 ~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~~~~~----~----~~~y~YsR~gnPt~~~Le~~la~le~~~~   81 (395)
T PRK05967         10 KAGINTRLAHDGNDPGDYHGFVNPPVVHASTVLFPDAETMAT----R----GQKYTYGTRGTPTTDALCKAIDALEGSAG   81 (395)
T ss_pred             cCCcccceeeCCCCCCCCCCCccCCccCCcceecCChHHhhc----c----cCCCccCCCCChHHHHHHHHHHHHhCCCC
Confidence            345667677754 33455799999999999999999876632    1    23589999999999999999999999988


Q ss_pred             EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      .++++|   |++|+++++.+++++||+||++++.|+++...+...+++ .|+++++++..+.+++++++ +++|++|+++
T Consensus        82 ~v~~sS---G~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~-~Gi~v~~vd~~~~e~l~~al-~~~TklV~le  156 (395)
T PRK05967         82 TILVPS---GLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKR-LGVEVEYYDPEIGAGIAKLM-RPNTKVVHTE  156 (395)
T ss_pred             EEEECc---HHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHhc-CcCceEEEEE
Confidence            999999   999999999999999999999999999998877666665 89999999887888899999 8899999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL  275 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~  275 (450)
                      +|+||++.+.|+++|+++|+++|+++++|++| .++.++|.++|+|++++|++|+++|+++.++|+++.+++.++++...
T Consensus       157 sPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~  236 (395)
T PRK05967        157 APGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEA  236 (395)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHH
Confidence            99999999999999999999999999999999 77788999999999999999999999999999888888777777655


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      +.    ..|..+++..|++++++++++..|++++.+++..++++|++++.  +|.||+++++|+|+++++++.   |+|+
T Consensus       237 ~~----~~G~~~~p~da~l~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~---g~gg  309 (395)
T PRK05967        237 HG----TLGLCAGPDDTYQILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFS---GASG  309 (395)
T ss_pred             HH----HcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCC---CCce
Confidence            44    67899999999999999999999999999999999999999986  899999999999999999886   7999


Q ss_pred             EEEEEeC-C----HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013079          354 LLCLDME-T----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL  428 (450)
Q Consensus       354 ~~~~~l~-~----~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~  428 (450)
                      +++|+++ +    .+.+.+|++.|+...    +++|+|+.+|+++++ .     ++.+.....|+.+++||||+| .|+.
T Consensus       310 ~~sf~l~~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~sLi~~~-~-----~~~~~~~~~~~~~~liRlSvG-lEd~  378 (395)
T PRK05967        310 IFSFVLAAGPEKGKAKAHAFLDALEIFG----LGYSWGGYESLALHV-K-----LGDRTVAKAPYAGPVIRLQIG-LEDV  378 (395)
T ss_pred             EEEEEEcCCCcccHHHHHHHHHhCCcce----EccCCCCcceeeeeC-C-----CChhHhhhccCCCCeEEEEec-cCCH
Confidence            9999997 3    577889999999743    799999999999873 2     233334345788899999999 9999


Q ss_pred             HHHHHHHHHHHHHhh
Q 013079          429 DQRWSQFEKALSRMQ  443 (450)
Q Consensus       429 ~~~i~~l~~al~~~~  443 (450)
                      ++++++|.+||+++.
T Consensus       379 ~dLi~Dl~~Al~~~~  393 (395)
T PRK05967        379 PDLKADLERGFAAAS  393 (395)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999998764

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-58  Score=439.93  Aligned_cols=383  Identities=38%  Similarity=0.540  Sum_probs=341.2

Q ss_pred             CChhHHHhhcCCCCCC--CCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079           39 EDPAAALASARHEFGE--HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA  116 (450)
Q Consensus        39 ~~~~~~~~~~~~~~~~--~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~  116 (450)
                      .++.+++.|.......  ++++.|||+.++++.+...     +....-+....+|.|+|.++|++..+++.|+++.|++.
T Consensus        20 ~~~~t~~~~~g~~~~~~~~~~v~~pI~~~~s~tfk~~-----~~~~~~~~~~~~~~Ysr~~nPt~~~le~~iaal~ga~~   94 (409)
T KOG0053|consen   20 SHLDTNLLHAGQDPEKAIHNAVAPPIYATLSTTFKQD-----LNEGEHGGNLDGYDYSRSGNPTRDVLESGIAALEGAAH   94 (409)
T ss_pred             cccchhhhhcccccchhccccccCceecccceeeccc-----CccccccccccccccccCCCCchHHHHHHHHHHhCCce
Confidence            4688888885443333  8999999995555444432     11111111122699999999999999999999999999


Q ss_pred             EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      +++++|   |+.|+..++..++.+|++|+.....|.++...++.+.++ +|++..+++.+|++++++++ .++|++|++|
T Consensus        95 ~l~fsS---GmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~-~gie~~~vd~~~~~~~~~~i-~~~t~~V~~E  169 (409)
T KOG0053|consen   95 ALLFSS---GMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPK-FGGEGDFVDVDDLKKILKAI-KENTKAVFLE  169 (409)
T ss_pred             EEEecc---cHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHH-hCceeeeechhhHHHHHHhh-ccCceEEEEE
Confidence            999999   999999999999999999999999999999999999886 99999999999999999999 7899999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHH
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMD  274 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~  274 (450)
                      +|.||++.+.||++|+++|+++|+++|||+++ +++.++|+.+|+|+|++|++|+++|+++.|||.++.+ .++.++++.
T Consensus       170 SPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~  249 (409)
T KOG0053|consen  170 SPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKF  249 (409)
T ss_pred             CCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHH
Confidence            99999999999999999999999999999999 6778999999999999999999999999999999886 888999988


Q ss_pred             HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      .+.    ..|+.+++..+++..++++++..|++++.+++..++++|++++.  ++.||++++||+|++++++.++  ++|
T Consensus       250 ~~~----~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~~g--~~G  323 (409)
T KOG0053|consen  250 LQE----DLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQKKG--GYG  323 (409)
T ss_pred             HHH----HhcCCCCHHHHHHHhcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhhcC--Ccc
Confidence            776    88999999999999999999999999999999999999999987  7999999999999999999885  344


Q ss_pred             cEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHH
Q 013079          353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW  432 (450)
Q Consensus       353 ~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i  432 (450)
                      +++++.+.+.+.+.+|++.|+...    +++|+|+++|++++|+.++|.. +.+++.+.|+++++||||+| .|+.++++
T Consensus       324 ~l~~~~~~~~~~a~kf~~~LK~~~----~a~SlG~~eSL~~~p~~mth~~-~~e~~~~~Gi~~~LVRvSVG-iEd~~dL~  397 (409)
T KOG0053|consen  324 GLSSVIFGNEEHAKKFYDALKLFT----KAPSLGGNESLAEPPAIMTHAS-ELEEREKFGIDPNLVRVSVG-IEDIEDLI  397 (409)
T ss_pred             eEEEEEcCCHHHHHHHHHhhhhhh----cccCcCccchhhcchhhhccCC-CHHHHHhcCCCCCcEEEEec-cCCHHHHH
Confidence            555555668888999999999743    7999999999999999999999 99999999999999999999 99999999


Q ss_pred             HHHHHHHHHhh
Q 013079          433 SQFEKALSRMQ  443 (450)
Q Consensus       433 ~~l~~al~~~~  443 (450)
                      .+|.+||+.+.
T Consensus       398 ~d~~~Al~~~~  408 (409)
T KOG0053|consen  398 KDFQQALEKAK  408 (409)
T ss_pred             HHHHHHHHhhc
Confidence            99999998763

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=4.8e-57  Score=454.62  Aligned_cols=390  Identities=29%  Similarity=0.460  Sum_probs=339.1

Q ss_pred             CChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      +++.+.+++.. .....+|++.|||+.|+||.+++.+.+.+.+...    .+.|.|+|..+|+++.|++.||+++|++.+
T Consensus        12 ~~~~t~~~~~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~----~~~~~Ysr~~~p~~~~Le~~lA~l~g~~~a   87 (436)
T PRK07812         12 WSFETKQIHAGQTPDPATNARALPIYQTTSYTFDDTDHAAALFGLA----EPGNIYTRIMNPTQDVVEQRIAALEGGVAA   87 (436)
T ss_pred             CCcchhheeCCCCCCCCCCCccCCCcCCCCcccCCHHHHHHhhcCC----cCCccccCCCCchHHHHHHHHHHHhCCCeE
Confidence            45667677744 3344568999999999999999988777766432    345889999999999999999999999999


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC-CCCHHHHHHhhhcCCceEEEEe
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD-ISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~-~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      ++++|   ||+|+.+++.+++++||+|+++...|+++...+...+++ .|+++.+++ ..|++++++++ +++|++|+++
T Consensus        88 v~~sS---G~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~-~Gi~v~~vdd~~d~e~l~~ai-~~~tklV~ie  162 (436)
T PRK07812         88 LLLAS---GQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPK-LGIEVSFVEDPDDLDAWRAAV-RPNTKAFFAE  162 (436)
T ss_pred             EEEcc---HHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhc-CeEEEEEECCCCCHHHHHHhC-CCCCeEEEEE
Confidence            99999   999999999999999999999999999988777665665 799999995 56899999999 8899999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHH------
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV------  269 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~------  269 (450)
                      +|+||+|.+.|+++|+++|+++|+++|+|+++ .+....+.++|+|+++.|+||++|++|..+||+++.+..+.      
T Consensus       163 ~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~  242 (436)
T PRK07812        163 TISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRF  242 (436)
T ss_pred             CCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccc
Confidence            99999999999999999999999999999998 66777888889999999999999999998988877532110      


Q ss_pred             ----------------H----H-HHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--e
Q 013079          270 ----------------N----S-MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--K  326 (450)
Q Consensus       270 ----------------~----~-l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~  326 (450)
                                      +    . +...+.......|..+++..|++++++++++..|++++.+++..++++|++++.  +
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~  322 (436)
T PRK07812        243 PGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLETLSLRIERHVANAQRVAEFLEARDEVAS  322 (436)
T ss_pred             cccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence                            0    0 001111122367899999999999999999999999999999999999999986  8


Q ss_pred             eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCH
Q 013079          327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA  405 (450)
Q Consensus       327 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~  405 (450)
                      |.||+++++|+|++++++++.  |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..+++
T Consensus       323 V~yPgl~s~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~a~slG~~~sLi~~p~~~~h~~~~~  396 (436)
T PRK07812        323 VNYAGLPSSPWYERAKRLAPK--GTGAVLSFELAGGVEAGKAFVNALTLHS----HVANIGDVRSLVIHPASTTHSQLTP  396 (436)
T ss_pred             EECCCCCCCccHHHHHHhCcC--CCceEEEEEecCCHHHHHHHHHhCCcce----EecccCCCcceeeCCCCCCcccCCH
Confidence            999999999999999998742  78999999997 4566889999999743    7999999999999999999999999


Q ss_pred             HHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          406 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       406 ~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      ++++.+|+++++||||+| +|+.+++|++|.+||++++.
T Consensus       397 ~~~~~~gi~~~liRlSvG-lEd~~dli~dl~~Al~~~~~  434 (436)
T PRK07812        397 EEQLATGVTPGLVRLAVG-IEGIDDILADLEAGFAAAKA  434 (436)
T ss_pred             HHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhhhc
Confidence            999999999999999999 99999999999999998764

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=100.00  E-value=3.2e-57  Score=454.13  Aligned_cols=386  Identities=32%  Similarity=0.505  Sum_probs=341.0

Q ss_pred             CCCChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079           37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA  116 (450)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~  116 (450)
                      +.+++.+.++|..+....++++.+|||.++++.+++.+.+...+...    ...|.|+|+++|+.++|++.||+++|++.
T Consensus         7 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~Le~~lA~l~G~~~   82 (398)
T PRK07504          7 RKWRPATRLVHSGTLRSQFGETSEALFLTQGFVYDTAEAAEARFKGE----DPGFIYSRYSNPTVDMFEKRMCALEGAED   82 (398)
T ss_pred             ccCCcccceeeCCCCCCCCCCCcCCeECCCCccCCCHHHHHHHhccC----cCCceeecCCCchHHHHHHHHHHHhCCCe
Confidence            44566676777543335578899999999999999887776655443    34589999999999999999999999999


Q ss_pred             EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      ++++++   |+.|+..++..++++||+|+++.+.|+++...+....++ .|+++++++..|++++++++ +++|++|+++
T Consensus        83 ~~~~~s---G~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~e~l~~ai-~~~tklV~le  157 (398)
T PRK07504         83 ARATAS---GMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPR-YGIESTLVDGLDLDNWEKAV-RPNTKVFFLE  157 (398)
T ss_pred             eeEecC---HHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhh-cCeEEEEECCCCHHHHHHhc-CcCceEEEEE
Confidence            888999   999999888888999999999999999988776555554 79999999988999999999 8899999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHH
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMD  274 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~  274 (450)
                      +|+||+|.+.|+++|.++|+++|+++|+|++| .++...+..+|+|++++|+||+++++|+++||+++++++++. .++.
T Consensus       158 sp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~  237 (398)
T PRK07504        158 SPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD  237 (398)
T ss_pred             CCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH
Confidence            99999999999999999999999999999999 455567778899999999999999999999889988877664 3443


Q ss_pred             HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      ...    ..|..+++..|++++++++++..|++++.+++..+.++|++++.  +|.||+++++|+|++++++++   |+|
T Consensus       238 ~~~----~~g~~~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~---g~g  310 (398)
T PRK07504        238 YFR----HTGPSLSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMT---GGS  310 (398)
T ss_pred             HHH----HhCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCC---CCc
Confidence            333    56788999999999999999999999999999999999999875  899999999999999999986   789


Q ss_pred             cEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          353 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       353 ~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      ++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++.+...|+++++||||+| .|+.+|+
T Consensus       311 ~~~s~~~~~~~~~~~~~~~~l~~~~----~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl  385 (398)
T PRK07504        311 TLVAFELKGGKEAAFRFLNALKIVR----ISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAG-LEDTDDL  385 (398)
T ss_pred             cEEEEEeCCCHHHHHHHHHhCCcce----ecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHH
Confidence            99999996 5677889999999743    7999999999999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHhh
Q 013079          432 WSQFEKALSRMQ  443 (450)
Q Consensus       432 i~~l~~al~~~~  443 (450)
                      +++|++||++++
T Consensus       386 ~~dl~~al~~~~  397 (398)
T PRK07504        386 IEDLAAALKKVR  397 (398)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998764

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=6.1e-57  Score=453.97  Aligned_cols=391  Identities=29%  Similarity=0.411  Sum_probs=336.8

Q ss_pred             CCCCChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCC
Q 013079           36 AAWEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT  114 (450)
Q Consensus        36 ~~~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~  114 (450)
                      .+++++.+.+++.. .....+|+++||||.|+||.+++.+.+...+...    ...|.|+|..+|+++.+++++|+++|+
T Consensus         9 ~~~~~~~t~~~~~~~~~~~~~~~~~~Pi~~sstf~~~~~~~~~~~~~~~----~~~~~Y~r~~~pt~~~le~~la~l~g~   84 (437)
T PRK05613          9 ADQWGFETRSIHAGQSVDSDTSARNLPIYQTTSYVFDSAEHAKQRFALE----DLGPIYSRLTNPTVEALENRIASLEGG   84 (437)
T ss_pred             cccCCcchHheeCCCCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccc----cCCceeeCccChHHHHHHHHHHHHhCC
Confidence            34456777777754 3344578999999999999999987776655432    235889999999999999999999999


Q ss_pred             CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC-CCCHHHHHHhhhcCCceEE
Q 013079          115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD-ISDHEMVNSAIVQGRTKVL  193 (450)
Q Consensus       115 ~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~-~~d~~~l~~ai~~~~t~lv  193 (450)
                      +..++++|   |++|+.+++.+++++||+||+++.+|+++...+...+.+ .|+++++++ ..|++++++++ +++|++|
T Consensus        85 ~~~v~fsS---G~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~-~Gi~v~~vd~~~d~e~l~~~l-~~~tk~V  159 (437)
T PRK05613         85 VHAVAFAS---GQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNR-LGIEVTFVENPDDPESWQAAV-QPNTKAF  159 (437)
T ss_pred             CeEEEeCC---HHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHh-cCeEEEEECCCCCHHHHHHhC-CccCeEE
Confidence            99999999   999999999988999999999999999997666555555 799999997 45899999999 8899999


Q ss_pred             EEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHH---
Q 013079          194 YFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV---  269 (450)
Q Consensus       194 ~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~---  269 (450)
                      +++++.||+|.++|+++|+++|+++|+++|+|+++ .+..+++.++|+|++++|+||+++++|..+||+++.+..+.   
T Consensus       160 ~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~  239 (437)
T PRK05613        160 FGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTV  239 (437)
T ss_pred             EEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCCCEEEeeccceecCCCcceeEEEEecCcccccc
Confidence            99999999999999999999999999999999998 55567888889999999999999999988889887532210   


Q ss_pred             ---------------------------H-H-HHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013079          270 ---------------------------N-S-MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM  320 (450)
Q Consensus       270 ---------------------------~-~-l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L  320 (450)
                                                 . . +...+.......|..+++..|+++.++++++..|++++.+++..++++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~lA~~L  319 (437)
T PRK05613        240 ERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQGLDTLSLRLERHNENAIKVAEFL  319 (437)
T ss_pred             cccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHH
Confidence                                       0 0 0011111233679999999999999999999999999999999999999


Q ss_pred             HhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccccccccccccc
Q 013079          321 KKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS  397 (450)
Q Consensus       321 ~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~  397 (450)
                      +++|.  +|.||+++++|+|+++++++..  |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+
T Consensus       320 ~~hp~V~~V~yPgl~~~p~~~~~~~~~~~--g~gg~~sf~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sLv~~p~~  393 (437)
T PRK05613        320 NNHEKVAKVNFAGLKDSPWYATKEKLGLK--YTGSVLSFDIKGGKDEAWAFIDALKLHS----NLANIGDVRSLVVHPAT  393 (437)
T ss_pred             HcCCCcceEECCCCCCCccHHHHHHhcCC--CCceEEEEEecCCHHHHHHHHHhCCcce----EccCCCCCchhhcCCCc
Confidence            99986  8999999999999999998642  68999999997 5677889999999743    79999999999999999


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          398 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       398 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ++|..++.+.+..+|+++++||||+| +|+.+|+|++|.+||+++
T Consensus       394 ~~h~~~~~~~~~~~Gi~~~liRlsvG-lE~~~dLi~Dl~~Al~~~  437 (437)
T PRK05613        394 TTHSQSDEAGLARAGITQATVRLSVG-IEDIDDIIADLEGGFAAI  437 (437)
T ss_pred             cCCccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999 999999999999999853

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=100.00  E-value=8.8e-57  Score=450.92  Aligned_cols=380  Identities=30%  Similarity=0.466  Sum_probs=338.0

Q ss_pred             CChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      +++.+.++|.......++++.+||+.++||.+++.+.+.+.+.+.    ...|.|+|+++|++++|+++||+++|.+.++
T Consensus        14 ~~~~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~Y~r~~~p~~~~le~~lA~l~g~~~al   89 (403)
T PRK07810         14 VSQATIGVRGGLLRSGFEETAEALYLTSGYVYESAAAAEAAFTGE----LDRFVYSRYGNPTVSMFEERLRLIEGAEACF   89 (403)
T ss_pred             CCcchhheeCCCCCCCCCCccCCccCCCccccCCHHHHHHHhccC----cCCcceeCCCCchHHHHHHHHHHHhCCCcEE
Confidence            567777777543234578999999999999999988877776543    2358899999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |+.|+..++.+++++||+|+++...|+++...+...+.+ .|+++++++..|++++++++ +++|++|++++|
T Consensus        90 ~~~s---G~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~ai-~~~tklV~~esp  164 (403)
T PRK07810         90 ATAS---GMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR-WGVETVFVDGEDLSQWEEAL-SVPTQAVFFETP  164 (403)
T ss_pred             EECC---hHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCceEEEEECC
Confidence            9999   999999999999999999999998888877666555554 79999999999999999999 889999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHHh
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLH  276 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~  276 (450)
                      +||+|.+.|+++|+++|+++|+++|+|++| .+....+.++|+|++++|++|+++++|+++||+++++++.+. .++...
T Consensus       165 ~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~  244 (403)
T PRK07810        165 SNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM  244 (403)
T ss_pred             CCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHH
Confidence            999999999999999999999999999999 556667788899999999999999999999999998876554 455443


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .    ..|..+++..+++++++++++..|++++.+++.++.++|++++.  +|.||+++++|+|++++++++   |+|++
T Consensus       245 ~----~~g~~~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~---g~g~~  317 (403)
T PRK07810        245 R----HTGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMS---GGGTV  317 (403)
T ss_pred             H----HhCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCC---CCceE
Confidence            3    56778899999999999999999999999999999999999986  899999999999999999986   78999


Q ss_pred             EEEEeCC-----HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013079          355 LCLDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD  429 (450)
Q Consensus       355 ~~~~l~~-----~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~  429 (450)
                      ++|++++     .+.+.+|++.|+...    +++|+|+.+|++.+|++++|..++.+.+...|+++++||||+| +|+.+
T Consensus       318 ~s~~l~~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~lvR~svG-lE~~~  392 (403)
T PRK07810        318 VTFELDAPEDAAKKRAFEVLDKLRVID----ISNNLGDAKSLITHPATTTHRAMGPEGRAAIGLGDGVVRLSVG-LEDTD  392 (403)
T ss_pred             EEEEEcCCCCcCHHHHHHHHHhCCceE----EeccCCCCcceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHH
Confidence            9999974     566789999998743    7999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHH
Q 013079          430 QRWSQFEKAL  439 (450)
Q Consensus       430 ~~i~~l~~al  439 (450)
                      ++|++|.+||
T Consensus       393 dli~dl~~Al  402 (403)
T PRK07810        393 DLIADLDRAL  402 (403)
T ss_pred             HHHHHHHHhh
Confidence            9999999987

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=6e-57  Score=449.67  Aligned_cols=374  Identities=30%  Similarity=0.432  Sum_probs=330.1

Q ss_pred             hhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.+.++| +......+|+++|||+.++||.+++.+.            ...|.|+|+++|+.+.|+++||+++|.+.+++
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~------------~~~~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~   72 (386)
T PRK08045          5 QATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNE------------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVL   72 (386)
T ss_pred             cccceeEcCCCCCCCCCCccCCccCCcceecCCccc------------cCCceeeCCCCccHHHHHHHHHHHhCCCeEEE
Confidence            3344455 4333345689999999999999987431            12488999999999999999999999989999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      |+|   |++|+.+++.+++++||+|+++.+.|+++...+...... .++++.+++..|++++++++ +++|++|++++|+
T Consensus        73 ~~s---g~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~gi~v~~vd~~d~e~l~~~l-~~~tklV~l~sP~  147 (386)
T PRK08045         73 TNT---GMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPS  147 (386)
T ss_pred             ECC---HHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh-CCeEEEEeCCCCHHHHHHhc-ccCCeEEEEECCC
Confidence            999   999999999999999999999999999877776655544 56788888877999999999 7899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQ  277 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~  277 (450)
                      ||||.+.|+++|.++|+++|+++++|++| .+....+..+++|++++|+||+++++++.++|+++. ++++++.+...+.
T Consensus       148 NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~  227 (386)
T PRK08045        148 NPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN  227 (386)
T ss_pred             CCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999 555567788899999999999999888777788865 5777777765555


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|..+++..+++++++++++..|++++.+++..++++|++++.  +|.||+++++|+|++++++++   |+|+++
T Consensus       228 ----~~g~~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~---g~g~~~  300 (386)
T PRK08045        228 ----NIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAML  300 (386)
T ss_pred             ----hcCCCCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CCCceE
Confidence                66888999999999999999999999999999999999999986  899999999999999999875   799999


Q ss_pred             EEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          356 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       356 ~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++.+..+|+++++||||+| .|+.+|++++
T Consensus       301 s~~~~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~d  375 (386)
T PRK08045        301 SFELDGDEQTLRRFLGGLSLFT----LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIAD  375 (386)
T ss_pred             EEEecCcHHHHHHHHHhcccee----EeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHH
Confidence            99997 4566789999999743    7999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHhh
Q 013079          435 FEKALSRMQ  443 (450)
Q Consensus       435 l~~al~~~~  443 (450)
                      |++||+++.
T Consensus       376 l~~al~~~~  384 (386)
T PRK08045        376 LENGFRAAN  384 (386)
T ss_pred             HHHHHHHhh
Confidence            999999875

>PRK05939 hypothetical protein; Provisional

Probab=100.00  E-value=9.1e-57  Score=449.57  Aligned_cols=371  Identities=30%  Similarity=0.530  Sum_probs=328.0

Q ss_pred             CCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHH
Q 013079           53 GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISS  132 (450)
Q Consensus        53 ~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~  132 (450)
                      ..+|+++|||+.++||.+++.+++.+.+...    ...|.|+|.++|+++.|+++||+++|++.++++++   |++|+..
T Consensus         5 ~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~----~~~~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ss---G~~Ai~~   77 (397)
T PRK05939          5 IEHGAVHKPIHTSVTYGYEDARDLIDVFQGK----KPGFTYARQGTPTTAALEAKITKMEGGVGTVCFAT---GMAAIAA   77 (397)
T ss_pred             CCCCCccCCccCCCCeecCCHHHHHHhhcCC----cCCCCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCC---HHHHHHH
Confidence            4568999999999999999988888877653    23589999999999999999999999999999999   9999999


Q ss_pred             HHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHH
Q 013079          133 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS  212 (450)
Q Consensus       133 al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~  212 (450)
                      ++.+++++||+|+++++.|+++...+.. +.+ .|+++++++..|++++++++ +++|++|++++|+||+|.+.|+++|+
T Consensus        78 ~l~all~~Gd~Vv~~~~~y~~t~~~~~~-l~~-~G~~v~~v~~~d~e~l~~~l-~~~tklV~vesp~NptG~v~dl~~I~  154 (397)
T PRK05939         78 VFLTLLRAGDHLVSSQFLFGNTNSLFGT-LRG-LGVEVTMVDATDVQNVAAAI-RPNTRMVFVETIANPGTQVADLAGIG  154 (397)
T ss_pred             HHHHHcCCCCEEEECCCccccHHHHHHH-HHh-cCCEEEEECCCCHHHHHHhC-CCCCeEEEEECCCCCCCCHHhHHHHH
Confidence            9999999999999999999987766643 344 79999999999999999999 88999999999999999999999999


Q ss_pred             HHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHH--------HHHH----------HH
Q 013079          213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN--------LVNS----------MM  273 (450)
Q Consensus       213 ~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~--------~~~~----------l~  273 (450)
                      ++|+++|+++|+|++| .+..+++..+|+|++++|+||+++++|+++||+++.+..        +...          +.
T Consensus       155 ~la~~~gi~livD~t~a~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
T PRK05939        155 ALCRERGLLYVVDNTMTSPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLT  234 (397)
T ss_pred             HHHHHcCCEEEEECCcccccccCccccCCEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHH
Confidence            9999999999999999 666778888899999999999999999999777664321        1111          11


Q ss_pred             HHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCc
Q 013079          274 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF  351 (450)
Q Consensus       274 ~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~  351 (450)
                      ..+.......|..+++..++++.++++++..|++++.+++..++++|+++|.  +|.||+++++|+|+++++++.   |+
T Consensus       235 ~~~~~~~~~~G~~~~p~~a~l~~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~---g~  311 (397)
T PRK05939        235 QIRKKGLRDMGATLSSEAAHRIAIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFR---HY  311 (397)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhcc---CC
Confidence            2222222367889999999999999999999999999999999999999986  899999999999999999985   79


Q ss_pred             CcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          352 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       352 g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      |++++|++++.+.+.+|++.++...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .||++|+
T Consensus       312 g~l~sf~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~lvR~svG-lEd~~dL  386 (397)
T PRK05939        312 GGLLSFELADGIDCFDFLNRLKLVI----KATHLGDTRTLVIPVAPTIYYEMGAERRASMGIADSLIRVSVG-IEDEADL  386 (397)
T ss_pred             ceEEEEEeCCHHHHHHHHHhCCcce----EccCCCCCCeeeecCcccccccCCHHHHHhcCCCCCeEEEEeC-CCCHHHH
Confidence            9999999986667889999998633    7999999999999999999999999999899999999999999 9999999


Q ss_pred             HHHHHHHHHH
Q 013079          432 WSQFEKALSR  441 (450)
Q Consensus       432 i~~l~~al~~  441 (450)
                      +++|.+||++
T Consensus       387 i~dl~~Al~~  396 (397)
T PRK05939        387 IADFEQALDA  396 (397)
T ss_pred             HHHHHHHHhc
Confidence            9999999974

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=9.4e-57  Score=452.91  Aligned_cols=386  Identities=31%  Similarity=0.468  Sum_probs=334.5

Q ss_pred             hHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEe
Q 013079           42 AAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT  120 (450)
Q Consensus        42 ~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~t  120 (450)
                      .+.+++.. .....+++++|||+.++||.+++.+++.+.+.+.    ...|.|+|..+|+.++|++.||+++|.+.++++
T Consensus         4 ~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~   79 (425)
T PRK06084          4 ETLAIHAGYSPDPTTKAVAVPIYQTTSYAFDDTQHGADLFDLK----VPGNIYTRIMNPTNDVLEQRVAALEGGVGALAV   79 (425)
T ss_pred             chhheeCCcCCCCCCCCccCCEeCCCCcccCCHHHHHHhhccc----cCCccccCCCCchHHHHHHHHHHHhCCCceeEe
Confidence            34455533 3334568999999999999999988888776543    235899999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCC
Q 013079          121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN  200 (450)
Q Consensus       121 sg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~N  200 (450)
                      +|   |++|+.+++.+++++||+|+++.+.|+++...+...++. .|+++.+++..|++++++++ +++|++|++++|+|
T Consensus        80 ss---G~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~-~gi~v~~~d~~d~e~le~ai-~~~tklV~lesp~N  154 (425)
T PRK06084         80 AS---GMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPR-IGIETRFAAHDDIAALEALI-DERTKAVFCESIGN  154 (425)
T ss_pred             hh---HHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccc-ceeEEEEECCCCHHHHHHHh-ccCCcEEEEeCCCC
Confidence            99   999999999999999999999999999888777666654 78999999988999999999 78899999999999


Q ss_pred             CcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH--HH-------
Q 013079          201 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VN-------  270 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--~~-------  270 (450)
                      |+|.+.|+++|.++|+++|+++|+|++| .++...+..+|+|++++|+||+++++|+++||+++.+...  ..       
T Consensus       155 PtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~  234 (425)
T PRK06084        155 PAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFAL  234 (425)
T ss_pred             CCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCCEEEECchhcccccccceeEEEEeCCccchhhccccccc
Confidence            9999999999999999999999999999 6666778888999999999999999999998888753221  00       


Q ss_pred             ---------------------HHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--ee
Q 013079          271 ---------------------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KV  327 (450)
Q Consensus       271 ---------------------~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v  327 (450)
                                           .+...+.......|..+++..|++++++++++..|++++.+++..++++|++++.  +|
T Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V  314 (425)
T PRK06084        235 LNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQGLETLALRMERHTENALKVARYLQQHPQVAWV  314 (425)
T ss_pred             cccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence                                 0001111112356888999999999999999999999999999999999999986  89


Q ss_pred             eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHH
Q 013079          328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE  406 (450)
Q Consensus       328 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~  406 (450)
                      .||+++++|+|.++++++.+  |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++
T Consensus       315 ~yP~l~~~p~~~~~~~~~~g--~~gg~~s~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~slv~~p~~~~h~~~~~~  388 (425)
T PRK06084        315 KYAGLPDHPEHELARRYMGG--KPASILSFGIKGGQAAGARFIDALKLVV----RLVNIGDAKSLACHPASTTHRQLNDE  388 (425)
T ss_pred             ECCCCCCcccHHHHHHhCCC--CcceEEEEEecCCHHHHHHHHHhCCcce----eccccCCCceeeeCCCcCCcccCCHH
Confidence            99999999999999998862  37999999997 5556789999999743    79999999999999999999999999


Q ss_pred             HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          407 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       407 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .+..+|+++++||||+| +||.+++|++|.+||++.+
T Consensus       389 ~~~~~gi~~~liR~svG-lEd~~dLi~dl~~Al~~~~  424 (425)
T PRK06084        389 ELEKAGVSRDMVRLSIG-IEHIDDIIADLAQALDASK  424 (425)
T ss_pred             HHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999 9999999999999998764

>PRK07049 methionine gamma-lyase; Validated

Probab=100.00  E-value=1.3e-56  Score=452.58  Aligned_cols=391  Identities=26%  Similarity=0.404  Sum_probs=338.0

Q ss_pred             ccCCCCChhHHHhhcCC-CCCCCCcccccccccCccccCCHHHHHHhhcCCCCC------CCCCccccCCCChhHHHHHH
Q 013079           34 TAAAWEDPAAALASARH-EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGP------DRDFFIYSRHFNPTVLNLSR  106 (450)
Q Consensus        34 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n------~~~~~~y~r~~~~~~~~l~~  106 (450)
                      .|.+++++.+++++..+ ....+|+++||||.+|||.+++.+++.+++....++      ....|.|+|+++|+...|++
T Consensus        11 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~R~~~Pt~~~Le~   90 (427)
T PRK07049         11 IGNRELHPETQMLNYGYDPELSEGAVKPPVFLTSTFVFRSAEDGRDFFDYVSGRKEPPAGEGAGLVYSRFNHPNSEIVED   90 (427)
T ss_pred             cCCCcCCcccceeeCCCCCCCCCCCccCCccCccceecCChHHHHhhhhccccccccccccccCccccCCCCcCHHHHHH
Confidence            34555667777777442 333468999999999999999998888876543221      12358899999999999999


Q ss_pred             HHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee-EEEeCCCCHHHHHHhh
Q 013079          107 QMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT-TTFVDISDHEMVNSAI  185 (450)
Q Consensus       107 ~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~-v~~v~~~d~~~l~~ai  185 (450)
                      .||+++|.+.+++++|   |++|+.+++.+++++||+|+++.|.|+++...+...+.. .|++ +.+.+..|++++++++
T Consensus        91 ~lA~leg~~~~iv~~s---G~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~-~Gi~~v~~~~~~d~~~l~~~l  166 (427)
T PRK07049         91 RLAVYEGAESAALFSS---GMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN-FGVGAVGFADGLSEAAIGAAA  166 (427)
T ss_pred             HHHHHhCCCcEEEEcc---HHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh-cCcEEEEEeCCCCHHHHHHHH
Confidence            9999999999999999   999999999999999999999999999998876554444 6887 4444455788887766


Q ss_pred             h----cCCceEEEEecCCCCcccccCHHHHHHHHHh------cCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCcccc-
Q 013079          186 V----QGRTKVLYFESISNPTLAVANIPELSRLAHD------KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISG-  253 (450)
Q Consensus       186 ~----~~~t~lv~i~~~~NptG~v~~l~~I~~la~~------~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~-  253 (450)
                      .    ++++++|++++|+||||.+.|+++|.++++.      +++++|+|++| +++...+...++|++++|+||++++ 
T Consensus       167 ~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~~g~divv~S~SK~~gG~  246 (427)
T PRK07049        167 EAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLEHGADLSVYSLTKYVGGH  246 (427)
T ss_pred             HhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccccCCCEEEEcCceeecCC
Confidence            2    2579999999999999999999999999987      79999999998 6666777788999999999999996 


Q ss_pred             CccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCC
Q 013079          254 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPG  331 (450)
Q Consensus       254 ~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~  331 (450)
                      +|.|+ ||+++++++++.+...+.    ..|..+++..++++.+.++++..|++++.++++.+.++|++++.  +|.||+
T Consensus       247 ~glr~-G~vv~~~~l~~~l~~~~~----~~g~~ls~~~a~l~~r~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~  321 (427)
T PRK07049        247 SDLVA-GAVLGRKALIRQVRALRS----AIGTQLDPHSCWMLGRSLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLP  321 (427)
T ss_pred             CCcEE-EEEECCHHHHHHHHHHHH----hcCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence            67775 999999999888887666    56888899999999999999999999999999999999999975  899998


Q ss_pred             C--CCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHH
Q 013079          332 L--EDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK  408 (450)
Q Consensus       332 ~--~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~  408 (450)
                      +  +++|+|++++++++   |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++.+.+
T Consensus       322 ~l~~~~~~~~~~~~~~~---g~g~~~s~~~~~~~~~~~~f~~~l~l~~----~~~slG~~~sli~~~~~~~h~~~~~~~~  394 (427)
T PRK07049        322 FLDPDSAYGAVYKRQCT---GAGSTFSFDIKGGQAAAFRFLNALQIFK----LAVSLGGTESLASHPASMTHSGVPADVR  394 (427)
T ss_pred             CCCCCCccHHHHHhhCC---CCccEEEEEEcCCHHHHHHHHHcCcccE----EcccCCCCCceeeCCCccccccCCHHHH
Confidence            5  99999999999885   79999999997 5567889999999743    7999999999999999999999999999


Q ss_pred             HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          409 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       409 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ..+|+++++||||+| +|+.+|+|++|.+||++
T Consensus       395 ~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~  426 (427)
T PRK07049        395 ERIGVLESTIRLSIG-IEHPDDLIADLAQALDA  426 (427)
T ss_pred             HhcCCCcCeEEEEeC-cCCHHHHHHHHHHHHhc
Confidence            999999999999999 99999999999999974

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=4.1e-56  Score=443.88  Aligned_cols=376  Identities=29%  Similarity=0.472  Sum_probs=328.4

Q ss_pred             hHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEec
Q 013079           42 AAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTA  121 (450)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~ts  121 (450)
                      .+.++++......+++++||||.++||.+++.+.    +.+.    ...|.|+|..+|+++++++.+|+++|++.+++++
T Consensus         4 ~t~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~----~~~~----~~~~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~   75 (385)
T PRK08574          4 GTDAVRGYRGSDPYGSLQPPIYLTALFRQEGEAY----PSDR----GFDLKYSREENPTLRPLEEALAKLEGGVDALAFN   75 (385)
T ss_pred             cceeeecCCCCCCCCCccCCccCCcceecCcchh----hcCC----cCCceEECCCCccHHHHHHHHHHHhCCCcEEEeC
Confidence            3444453333344689999999999998876522    2221    2358999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC-CceEEEEecCCC
Q 013079          122 SDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG-RTKVLYFESISN  200 (450)
Q Consensus       122 g~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~-~t~lv~i~~~~N  200 (450)
                      |   |++|+.+++.+++++||+|+++.+.|+++...+... .. .|+++.+++. |++++++++ ++ +|++|++++|+|
T Consensus        76 s---G~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~-~~-~g~~v~~~~~-d~~~l~~~i-~~~~tklV~ie~p~N  148 (385)
T PRK08574         76 S---GMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSL-EK-FGVKVVLAYP-STEDIIEAI-KEGRTKLVFIETMTN  148 (385)
T ss_pred             C---HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHh-hc-cCcEEEEECC-CHHHHHHhc-CccCceEEEEECCCC
Confidence            9   999999999999999999999999999998877543 43 7889888764 689999999 66 899999999999


Q ss_pred             CcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEE-EcCHHHHHHHHHHhhh
Q 013079          201 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQG  278 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~  278 (450)
                      |+|.+.|+++|+++|+++|+++|+|++| .++.+.+...|+|++++|+||+++++|+++||++ +.++++++.++..+. 
T Consensus       149 PtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~-  227 (385)
T PRK08574        149 PTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR-  227 (385)
T ss_pred             CCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH-
Confidence            9999999999999999999999999999 6666778888999999999999999998888855 557788888876665 


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                         ..|..+++..+++++++++++..|++++.+++.++.++|++++.  +|.||+++++|+|+++++++++ .|+|++++
T Consensus       228 ---~~g~~~~p~~a~l~l~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~-~g~g~~~s  303 (385)
T PRK08574        228 ---RLGTIMQPFEAYLVLRGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGK-DLYGGVVS  303 (385)
T ss_pred             ---hcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCC-CCcceEEE
Confidence               56778888999999999999999999999999999999999986  8999999999999999998842 26899999


Q ss_pred             EEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          357 LDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       357 ~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      |+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+++|++|
T Consensus       304 ~~l~~~~~~~~~~~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl  378 (385)
T PRK08574        304 FRVKGGRDAVLKFLRSLKLIK----PSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVG-LEDVEDLIEDL  378 (385)
T ss_pred             EEeCCCHHHHHHHHHcCCcce----EccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHH
Confidence            9997 5677899999999743    7999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHh
Q 013079          436 EKALSRM  442 (450)
Q Consensus       436 ~~al~~~  442 (450)
                      ++||+++
T Consensus       379 ~~al~~~  385 (385)
T PRK08574        379 DQALGSI  385 (385)
T ss_pred             HHHHhcC
Confidence            9999764

>PRK07503 methionine gamma-lyase; Provisional

Probab=100.00  E-value=9.1e-56  Score=444.27  Aligned_cols=386  Identities=36%  Similarity=0.520  Sum_probs=338.7

Q ss_pred             ChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.+.++|.. .....+|++.|||+.|+||.+++.+++.+.+.+.    ...|.|+|+.+|.++++++.||+++|++.++
T Consensus         9 ~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i   84 (403)
T PRK07503          9 GFSTRAIHHGYDPLDHGGALVPPVYLTATFAFPTAEYGAECFAGE----EEGHFYSRISNPTLALLEQRMASLEGGEAAV   84 (403)
T ss_pred             CccchheeCCCCCCCCCCCccCCcccCcceecCChHHHHHhhccc----cCCceeeCCCCchHHHHHHHHHHHhCCCcEE
Confidence            3555556643 3345578999999999999999998888877543    3468999999999999999999999999899


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |+.|+.+++.+++++||+|+++.+.|.++...+...... .|+++++++.+|++++++++ +++|++|++++|
T Consensus        85 ~~~s---G~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklV~le~p  159 (403)
T PRK07503         85 ALAS---GMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGE-FGVTVRHVDLTDPAALKAAI-SDKTRMVYFETP  159 (403)
T ss_pred             EEcC---HHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhh-CCEEEEEeCCCCHHHHHHhc-CccCcEEEEeCC
Confidence            9999   999999999988999999999999998777666544554 79999999999999999999 789999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ  277 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~  277 (450)
                      +||+|.+.|+++|.++|+++|+++|+|++| .++...+..+++|++++|+||+++++|+.+||+++.+++++++++....
T Consensus       160 ~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~  239 (403)
T PRK07503        160 ANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPLELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGL  239 (403)
T ss_pred             CCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhH
Confidence            999999999999999999999999999999 4455566677999999999999999887778999988888888764311


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                      .  ...|..+++..+++++++++++..|++++.+++..+.++|++++.  +|.+|+++++|+|++++++++   |+|+++
T Consensus       240 ~--~~~g~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~---~~g~~~  314 (403)
T PRK07503        240 K--DMTGAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMA---LPGGMI  314 (403)
T ss_pred             H--hCcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCCceE
Confidence            1  145778889999999999999999999999999999999999985  789999999999999999876   789999


Q ss_pred             EEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          356 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       356 ~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +|.++ +.+.+.+|++.++...    +++|+|+++|++++|.+++|..++++++..+|+++++||||+| +|+.+|+|++
T Consensus       315 s~~~~~~~~~~~~~~~~l~l~~----~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~d  389 (403)
T PRK07503        315 AFELKGGIAAGRRFMNALQLFA----RAVSLGDAESLAQHPASMTHSTYTPEERAEHGISEGLVRLSVG-LEDVADILAD  389 (403)
T ss_pred             EEEECCCHHHHHHHHHhCCcce----eecccCCCCccCcCCCCCccccCCHHHHHhcCCCCCeEEEEEe-cCCHHHHHHH
Confidence            99997 5666789999998633    6899999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHhhh
Q 013079          435 FEKALSRMQD  444 (450)
Q Consensus       435 l~~al~~~~~  444 (450)
                      |.+||+++..
T Consensus       390 l~~Al~~~~~  399 (403)
T PRK07503        390 LAQALDACAV  399 (403)
T ss_pred             HHHHHHHHHH
Confidence            9999997753

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=100.00  E-value=3.7e-56  Score=444.71  Aligned_cols=366  Identities=35%  Similarity=0.568  Sum_probs=329.8

Q ss_pred             CCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHH
Q 013079           53 GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISS  132 (450)
Q Consensus        53 ~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~  132 (450)
                      ..++++.+|||.++||.+++.+++...+.+.    ...|.|+|+.+|..+++++.||+++|++.+++++|   |++|+.+
T Consensus        12 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~la~l~g~~~~~~~~s---G~~Ai~~   84 (380)
T TIGR01325        12 TEFREHAEALFLTSSFVYDSAAHAADRFAGE----IPGFVYSRYANPTVAAFEERIAALEGAERAVATAT---GMSAIQA   84 (380)
T ss_pred             CCCCCccCCeeCCcceecCCHHHHHHhhccc----cCCcceecCCCchHHHHHHHHHHHhCCCcEEEECC---HHHHHHH
Confidence            4568899999999999999877666665443    23588999999999999999999999999999999   9999999


Q ss_pred             HHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHH
Q 013079          133 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS  212 (450)
Q Consensus       133 al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~  212 (450)
                      ++.+++++||+|+++.+.|++....+.....+ .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.|+++|.
T Consensus        85 al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~-~g~~v~~v~~~d~~~l~~~i-~~~tklV~le~p~np~g~~~dl~~I~  162 (380)
T TIGR01325        85 ALMTLLQAGDHVVASRSLFGSTVGFISEILPR-FGIEVSFVDPTDLNAWEAAV-KPNTKLVFVETPSNPLGELVDIAALA  162 (380)
T ss_pred             HHHHHhCCCCEEEEecCCcchHHHHHHHHHHH-hCCEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCeeeCHHHHH
Confidence            99999999999999999998877666555554 79999999998999999999 78999999999999999999999999


Q ss_pred             HHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHH
Q 013079          213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV  291 (450)
Q Consensus       213 ~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~  291 (450)
                      ++|+++|+++|+|++| .++...+.++|+|++++|+||+++++|+++||++++++++++.++....    ..|..+++..
T Consensus       163 ~la~~~gi~livD~a~~~~~~~~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~----~~g~~~~p~~  238 (380)
T TIGR01325       163 ELAHAIGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLR----HTGPAMSPFN  238 (380)
T ss_pred             HHHHHcCCEEEEECCCcccccCCchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHH----hhCCCCCHHH
Confidence            9999999999999999 4556677788999999999999999999888999999888888776554    5677788888


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHH
Q 013079          292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLM  369 (450)
Q Consensus       292 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~  369 (450)
                      ++.++++++++..|++++.+++..+.++|+++|.  +|.||+++++|+|+++++++.   |+|++++|++++.+.+.+|+
T Consensus       239 a~~~l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~---g~g~~~s~~l~~~~~~~~f~  315 (380)
T TIGR01325       239 AWVLLKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQS---GGGTVIGFDVADRAAAWKVL  315 (380)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEEEEECCHHHHHHHH
Confidence            8889999999999999999999999999999975  899999999999999999885   78999999998777789999


Q ss_pred             HHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          370 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       370 ~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                      +.|+...    +++|+|+.+|++.+|.+++|..++++.+...|+++++||||+| .|+.++++++|++||
T Consensus       316 ~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al  380 (380)
T TIGR01325       316 DAVELVS----ITNNLGDAKSTITHPATTTHGRMQPEERAAAGIGDGLVRLSVG-LEDVDDLIADLKRAL  380 (380)
T ss_pred             HcCCcce----EcccCCCCCeeeeCCCccCcccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHhhC
Confidence            9999743    7999999999999999999999999999999999999999999 999999999999985

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK06234 methionine gamma-lyase; Provisional

Probab=100.00  E-value=1.5e-55  Score=442.64  Aligned_cols=388  Identities=39%  Similarity=0.546  Sum_probs=341.4

Q ss_pred             CCCCChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCC
Q 013079           36 AAWEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT  114 (450)
Q Consensus        36 ~~~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~  114 (450)
                      ++++++.+.+++.. .....++++.+|++.++|+.++..+++...+...    ..+|.|+|+++|...+|++.||+++|.
T Consensus         4 ~~~~~~~t~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~r~~~p~~~~Le~~iA~~~g~   79 (400)
T PRK06234          4 IKKMGFATKAIHGGHIGDKQFGSLATPIYQTSTFIFDSAEQGGRRFAGE----ESGYIYSRLGNPTSTEVENKLALLEGG   79 (400)
T ss_pred             cccCCccchheECCCCCCCCCCCccCCcccccceecCChHHHHHhhccC----cCCCcccCCCCccHHHHHHHHHHHhCC
Confidence            45566666666643 3344578999999999999999987777666442    235779999999999999999999999


Q ss_pred             CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEE
Q 013079          115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY  194 (450)
Q Consensus       115 ~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~  194 (450)
                      +.+++++|   |++|+.+++.+++++||+|+++.+.|+.+...+...+.. .|+++++++..|++++++++ +++|++|+
T Consensus        80 ~~~l~~~s---G~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~e~l~~~i-~~~tklI~  154 (400)
T PRK06234         80 EAAVVAAS---GMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTR-YGVEVTFVDTSNLEEVRNAL-KANTKVVY  154 (400)
T ss_pred             CcEEEEcC---HHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhh-CCeEEEEECCCCHHHHHHHh-ccCCeEEE
Confidence            99999999   999999999999999999999999999888776555554 79999999999999999999 88999999


Q ss_pred             EecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHH
Q 013079          195 FESISNPTLAVANIPELSRLAHDK--GVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS  271 (450)
Q Consensus       195 i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~  271 (450)
                      +++|+||||.+.|+++|.++|+++  |+++++|++| .+....+...++|++++|+||+++++|+++||++++++++++.
T Consensus       155 iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~  234 (400)
T PRK06234        155 LETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQ  234 (400)
T ss_pred             EECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHHH
Confidence            999999999999999999999997  9999999999 4444566777899999999999999999888999999888887


Q ss_pred             HHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCC
Q 013079          272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEY  349 (450)
Q Consensus       272 l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~  349 (450)
                      ++.....  ...|..+++..+++..++++++..|++++.+++.++.++|++++.  +|.+|+++++|+|++++++++   
T Consensus       235 l~~~~~~--~~~g~~l~p~~a~l~~~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~---  309 (400)
T PRK06234        235 VKLFGIK--DMTGSVIGPFEAFLIIRGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMS---  309 (400)
T ss_pred             HHHHHHH--HhcCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCC---
Confidence            7643211  145778889999999999999999999999999999999999886  899999999999999999886   


Q ss_pred             CcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013079          350 GFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL  428 (450)
Q Consensus       350 g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~  428 (450)
                      |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+...|+++++||||+| .|+.
T Consensus       310 ~~g~l~s~~l~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-lE~~  384 (400)
T PRK06234        310 LPGAMISFELKGGVEEGKVVMNNVKLAT----LAVSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVG-LEDV  384 (400)
T ss_pred             CCCceEEEEecCcHHHHHHHHHhCCcce----EeccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeC-CCCH
Confidence            78999999997 5566889999999743    8999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHh
Q 013079          429 DQRWSQFEKALSRM  442 (450)
Q Consensus       429 ~~~i~~l~~al~~~  442 (450)
                      +|++++|.+||+++
T Consensus       385 ~dl~~dl~~al~~~  398 (400)
T PRK06234        385 DDIIADLKQALDLI  398 (400)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=100.00  E-value=1.3e-55  Score=439.42  Aligned_cols=372  Identities=33%  Similarity=0.537  Sum_probs=327.7

Q ss_pred             hhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.+.+++ +......+|+++|||+.++||.+++..           . ...|.|+|+++|++..|++++|+++|++.+++
T Consensus         3 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~-----------~-~~~~~y~r~~~p~~~~Le~~la~l~g~~~al~   70 (380)
T PRK06176          3 MQTKLIHGGISEDTTTGAVSVPIYQTSTYRQDAIG-----------R-PKGYEYSRSGNPTRFALEELIADLEGGVKGFA   70 (380)
T ss_pred             ccceeeECCCCCCCCCCCccCCcccCCceecCCCC-----------C-cCCCcccCCCChhHHHHHHHHHHHhCCCCEEE
Confidence            4444455 322234468999999999999888721           1 23589999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   ||.|+.+++ .++++||+|+++++.|++....+.....+ .|+++++++..|++++++++ +++|++|++++|+
T Consensus        71 ~~S---G~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~-~gi~v~~vd~~d~e~l~~ai-~~~t~lV~lesP~  144 (380)
T PRK06176         71 FAS---GLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVK-NGLSCTIIDTSDLSQIKKAI-KPNTKALYLETPS  144 (380)
T ss_pred             ECC---HHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHh-cCeEEEEcCCCCHHHHHHhc-CcCceEEEEECCC
Confidence            999   999998766 56799999999999999988777665555 79999999999999999999 8899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQ  277 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~  277 (450)
                      ||+|.+.|+++|+++|+++|+++|+|++| .++...+..+++|++++|++|+++++++.+||+++. ++++.++++..+.
T Consensus       145 Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~  224 (380)
T PRK06176        145 NPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN  224 (380)
T ss_pred             CCCceecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 455556778899999999999999999888898876 4567777766655


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|..+++..++...++++++..|++++.+++.++.++|++++.  ++.+|+++++|+|+++++++.   |+|+++
T Consensus       225 ----~~G~~~~~~~~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~~  297 (380)
T PRK06176        225 ----AIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMR---GFSGML  297 (380)
T ss_pred             ----HhcCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCceEE
Confidence                56777788888999999999999999999999999999999986  899999999999999999885   799999


Q ss_pred             EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      +|++++.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+|+|++|
T Consensus       298 s~~~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~dl  372 (380)
T PRK06176        298 SFTLKNDSEAVAFVESLKLFI----LGESLGGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVG-IEHEQDLLEDL  372 (380)
T ss_pred             EEEECCHHHHHHHHHcCCcce----EccCCCCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHH
Confidence            999987778899999999743    7999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHh
Q 013079          436 EKALSRM  442 (450)
Q Consensus       436 ~~al~~~  442 (450)
                      ++||+++
T Consensus       373 ~~Al~~~  379 (380)
T PRK06176        373 EQAFAKI  379 (380)
T ss_pred             HHHHhhc
Confidence            9999864

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=100.00  E-value=2.2e-55  Score=438.20  Aligned_cols=371  Identities=33%  Similarity=0.469  Sum_probs=326.1

Q ss_pred             hHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEe
Q 013079           42 AAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT  120 (450)
Q Consensus        42 ~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~t  120 (450)
                      .++++|.. .....+|+++|||+.++|+.+++..           . ...|.|+|+++|+.+++++.||+++|++.+++|
T Consensus         5 ~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~-----------~-~~~~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~   72 (382)
T TIGR02080         5 ATIAVRSGLNSDTQYGCVVPPIYLSTTYNFTGFN-----------E-PRAYDYSRSGNPTRDLLQQALAELEGGAGAVVT   72 (382)
T ss_pred             ccceeecCCCCCCCCCCccCCeeCCceeEeCCcC-----------c-cCCCcccCCCCchHHHHHHHHHHHhCCCcEEEE
Confidence            34455533 2223468999999999999886531           1 124789999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCC
Q 013079          121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN  200 (450)
Q Consensus       121 sg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~N  200 (450)
                      +|   |++|+.+++.+++++||+|+++.+.|+++...+..+... .++++.+++.+|++++++++ +++|++|++++|+|
T Consensus        73 ~g---g~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~-~~~~v~~~d~~d~~~l~~ai-~~~tklV~l~~p~N  147 (382)
T TIGR02080        73 NT---GMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK-GCFRVLFVDQGDEQALRAAL-AQKPKLVLIETPSN  147 (382)
T ss_pred             cC---HHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh-cCeEEEEECCCCHHHHHHhc-CcCceEEEEECCCC
Confidence            99   999999999999999999999999999888777555443 57889988888999999999 78899999999999


Q ss_pred             CcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhh
Q 013079          201 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQG  278 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~  278 (450)
                      |||.+.|+++|.++|+++|+++++|++| .+....+..+++|++++|+||++++++..++|+++. ++++++++...+. 
T Consensus       148 PtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~-  226 (382)
T TIGR02080       148 PLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWAN-  226 (382)
T ss_pred             CCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHH-
Confidence            9999999999999999999999999999 455566777899999999999999776656688755 6778888876666 


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                         ..|..+++..+++++++++++..|++++.+++..+.++|++++.  +|.||+++++|+|+++++++.   |+|++++
T Consensus       227 ---~~g~~~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~s  300 (382)
T TIGR02080       227 ---NLGVTGGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQK---GFGAMLS  300 (382)
T ss_pred             ---ccCCCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCCceEE
Confidence               67888999999999999999999999999999999999999987  899999999999999999875   7999999


Q ss_pred             EEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          357 LDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       357 ~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      |+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.++++++|
T Consensus       301 ~~~~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-lE~~~dl~~dl  375 (382)
T TIGR02080       301 FELKGGEQTVRRFLGGLSLFT----LAESLGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVG-LEDADDLIADL  375 (382)
T ss_pred             EEecCcHHHHHHHHHcCCcce----EeccCCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHH
Confidence            9997 4566789999999743    7999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHH
Q 013079          436 EKALSR  441 (450)
Q Consensus       436 ~~al~~  441 (450)
                      .+||++
T Consensus       376 ~~al~~  381 (382)
T TIGR02080       376 EQGLRA  381 (382)
T ss_pred             HHHHhh
Confidence            999974

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK06767 methionine gamma-lyase; Provisional

Probab=100.00  E-value=3.4e-55  Score=438.62  Aligned_cols=376  Identities=32%  Similarity=0.488  Sum_probs=328.9

Q ss_pred             ChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.+.++|.. .....+|+++|||+.|+||.+++.+.+.+++.+.    ...|.|+|+++|++++|++.||+++|.+.++
T Consensus         5 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al   80 (386)
T PRK06767          5 HMETALIHHGYTSEEHKGSLTPPLFQTSTFTFETAQQGEASFAGV----DPSYIYSRLGNPTVKLFEERMAVLEGGEEAL   80 (386)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccCccceecCCHHHHHHhhccC----cCCccccCCCCcchHHHHHHHHHHhCCCcEE
Confidence            3556666643 3334568999999999999999998888887654    2358899999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |++|+.+++.+++++||+|+++.+.|+++...+.....+ .|+++.+++..|++++++++ +++|++|++++|
T Consensus        81 ~~~s---G~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~-~gi~~~~~~~~d~~~l~~~i-~~~tklV~lesp  155 (386)
T PRK06767         81 AFGS---GMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEK-FMITHSFCDMETEADIENKI-RPNTKLIFVETP  155 (386)
T ss_pred             EECC---HHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhh-cCeEEEEeCCCCHHHHHHhh-CcCceEEEEeCC
Confidence            9999   999999999999999999999999999888777655554 68899998888999999999 789999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH-Hh
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LH  276 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~~  276 (450)
                      +||+|.+.|+++|.++|+++|+++|+|++| .+....+...|+|++++|+||+++++|+++||+++++++.+..+.. .+
T Consensus       156 ~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~  235 (386)
T PRK06767        156 INPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMR  235 (386)
T ss_pred             CCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHH
Confidence            999999999999999999999999999999 5555566777999999999999999999988999999887766543 33


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .    ..|+.+++..+++.+++++++..|++++.+++.+++++|++++.  .+.+|      +|++++++++   +.|++
T Consensus       236 ~----~~g~~~~~~~a~l~~~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p------~~~~~~~~~~---~~gg~  302 (386)
T PRK06767        236 K----DIGGIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP------EGELASRQMK---RGGGV  302 (386)
T ss_pred             H----HhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC------CcHHHHHhCC---CCCce
Confidence            3    45666778888888899999999999999999999999999875  57776      6789999886   68999


Q ss_pred             EEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          355 LCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       355 ~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      ++|+++ +.+.+.+|++.|+..   + +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+|+++
T Consensus       303 vsf~l~~~~~~~~~f~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svG-lE~~~dl~~  377 (386)
T PRK06767        303 ISFSIKGGKEETQAFINDLHFI---T-IAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVG-LESWEDIVS  377 (386)
T ss_pred             EEEEEcCCHHHHHHHHHhCCcc---E-EecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHH
Confidence            999997 556788999999874   3 8999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHh
Q 013079          434 QFEKALSRM  442 (450)
Q Consensus       434 ~l~~al~~~  442 (450)
                      +|.+||.++
T Consensus       378 dl~~al~~~  386 (386)
T PRK06767        378 DLEQALKKI  386 (386)
T ss_pred             HHHHHHhhC
Confidence            999999753

>PLN02509 cystathionine beta-lyase

Probab=100.00  E-value=2.2e-55  Score=443.75  Aligned_cols=374  Identities=29%  Similarity=0.473  Sum_probs=327.8

Q ss_pred             CCChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           38 WEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      ..++.+.++|.......+++++|||+.++||.+++..        .    ...|.|+|.++|+++.+++.+|++++.+.+
T Consensus        84 ~~~~~t~~~~~~~~~~~~~~~~~Pi~~sst~~~~~~~--------~----~~~~~Y~r~gnpt~~aLE~~lA~leg~e~a  151 (464)
T PLN02509         84 EASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAI--------E----NGPYDYTRSGNPTRDALESLLAKLDKADRA  151 (464)
T ss_pred             CCCcchHheeCCCCCCCCCCccCCccccceecCcccc--------c----cCCCccCCCCCHHHHHHHHHHHHHhCCCEE
Confidence            4456677777553334578999999999999877621        1    135889999999999999999999999999


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      ++++|   |++|+.+++ .++++||+||++.+.|+++...+.....+ .|+++.+++..|++++++++ +++|++|++++
T Consensus       152 i~~~S---G~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~-~G~~v~~vd~~d~e~l~~ai-~~~TklV~les  225 (464)
T PLN02509        152 FCFTS---GMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTNLDEVAAAI-GPQTKLVWLES  225 (464)
T ss_pred             EEeCc---HHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHH-CCeEEEEeCCCCHHHHHHhC-CcCCeEEEEEC
Confidence            99999   999987655 57899999999999999988776554444 79999999988999999999 88999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHH
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDL  275 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~  275 (450)
                      |+||+|.+.|+++|+++|+++|+++|+|++| .++...+..+++|++++|++|+++++++.+||+++. ++.+.+.++..
T Consensus       226 PsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~  305 (464)
T PLN02509        226 PTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL  305 (464)
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHH
Confidence            9999999999999999999999999999999 566667777899999999999999988877898875 44555655544


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      +.    ..|..+++..|++.+++++++..|++++.++++++.++|++++.  +|.||+++++|+|++++++++   |+|+
T Consensus       306 ~~----~~g~~l~p~~A~l~lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~---g~gg  378 (464)
T PLN02509        306 QN----SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGS  378 (464)
T ss_pred             HH----hcCCCcCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCC---CCce
Confidence            44    45666788999999999999999999999999999999999986  899999999999999999986   7999


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      +++|.+.+.+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++++.++|+++++||||+| .|+.+|+|+
T Consensus       379 ~~sf~~~~~~~~~~f~~~l~l~~----~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvG-lE~~~DLi~  453 (464)
T PLN02509        379 VFSFITGSVALSKHLVETTKYFS----IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLIS  453 (464)
T ss_pred             EEEEEeCCHHHHHHHHHcCCcce----EcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHH
Confidence            99999987777889999999633    8999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHH
Q 013079          434 QFEKALSR  441 (450)
Q Consensus       434 ~l~~al~~  441 (450)
                      +|++||+.
T Consensus       454 Dl~~Al~~  461 (464)
T PLN02509        454 DLDIAFRT  461 (464)
T ss_pred             HHHHHHcc
Confidence            99999974

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=5.1e-55  Score=438.05  Aligned_cols=374  Identities=32%  Similarity=0.471  Sum_probs=328.1

Q ss_pred             hhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.++++|.. .....+|++.|||+.++||.+++..           . ...|.|+|+.+|+.+.|+++||+++|++..++
T Consensus        13 ~~t~~~~~~~~~~~~~~~~~~pi~~ss~~~~~~~~-----------~-~~~~~y~R~~~p~~~~Le~~lA~l~g~~~~v~   80 (405)
T PRK08776         13 AATAAVRAGIDRDTAYGAVTPPIVLSSNFSFDGFG-----------N-KRQYDYTRSGNPTRDLLGEALAELEGGAGGVI   80 (405)
T ss_pred             ccchheeCCCCCCCCCCCccCCEeccceEEeCCCC-----------c-ccCCcccCCCChHHHHHHHHHHHHhCCCceEE
Confidence            445556643 3334578999999999999887621           0 12578999999999999999999999988999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   |++|+++++.+++++||+|+++.|.|++....+.....+ .|+++.+++..|++++++++ +++|++|++++|+
T Consensus        81 ~~s---G~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~-~g~~v~~v~~~d~~~l~~~i-~~~tklV~l~~P~  155 (405)
T PRK08776         81 TAT---GMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKK-GHFALITADLTDPRSLADAL-AQSPKLVLIETPS  155 (405)
T ss_pred             EcC---HHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCC
Confidence            999   999999999999999999999999999977666554444 68899999888999999999 7899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQ  277 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~  277 (450)
                      ||||.+.|+++|+++|+++|+++|+|++| .+....+..+|+|++++|+||+++++|+.++|+++. ++++.+++...+.
T Consensus       156 NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~  235 (405)
T PRK08776        156 NPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPLEFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWAN  235 (405)
T ss_pred             CCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcccccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999 555567778899999999999999888777788765 5677777765554


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|..+++..+++..+++++++.|++++.+++..+.++|++++.  +|.||+++++|+|++++++++   |+|+++
T Consensus       236 ----~~g~~~s~~~a~l~~~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g~~~  308 (405)
T PRK08776        236 ----ALGLTGSPFDAFLTLRGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQK---GFGAML  308 (405)
T ss_pred             ----hcCCCCCHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCC---CCceEE
Confidence                45666788899998899999999999999999999999999986  899999999999999999885   799999


Q ss_pred             EEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          356 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       356 ~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+|+|++
T Consensus       309 s~~~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liR~svG-lE~~~dli~d  383 (405)
T PRK08776        309 SFELEGGEAAVRAFVDGLRYFT----LAESLGGVESLIAHPASMTHAAMTAEARAAAGISDGLLRLSVG-IESAEDLLID  383 (405)
T ss_pred             EEEEcCCHHHHHHHHHhCCcce----EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHH
Confidence            99997 5666789999999743    7999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHhh
Q 013079          435 FEKALSRMQ  443 (450)
Q Consensus       435 l~~al~~~~  443 (450)
                      |++||+++.
T Consensus       384 l~~al~~~~  392 (405)
T PRK08776        384 LRAGLARAE  392 (405)
T ss_pred             HHHHHHHhH
Confidence            999999864

>PRK07671 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=5.3e-55  Score=435.03  Aligned_cols=371  Identities=36%  Similarity=0.578  Sum_probs=327.2

Q ss_pred             ChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.+.++++. .....+|+++|||+.++||.+++..        .    ...|.|+|+++|+...|++.+|+++|.+..+
T Consensus         2 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~----~~~~~y~r~~~p~~~~Le~~lA~l~g~~~~~   69 (377)
T PRK07671          2 RAKTKLIHGGIIGDPSTGAVSVPIYQVSTYKQEAVG--------K----HQGYEYSRTGNPTRAALEELIAVLEGGHAGF   69 (377)
T ss_pred             CcccceeeCCCCCCCCCCCccCCccCCcceecCCCC--------C----cCCCCcCCCCChHHHHHHHHHHHHhCCCceE
Confidence            3455566643 3344578999999999999887631        1    2358899999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      ++++   |+.++.+++ .++++||+|+++++.|++....+.....+ .|+++++++..|++++++++ +++|++|++++|
T Consensus        70 ~~~s---G~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tklV~le~P  143 (377)
T PRK07671         70 AFGS---GMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNR-FGIEHTFVDTSNLEEVEEAI-RPNTKAIYVETP  143 (377)
T ss_pred             EeCC---HHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhc-CCeEEEEECCCCHHHHHHhc-CCCCeEEEEECC
Confidence            9999   999988765 57899999999999999777666555554 79999999988999999999 889999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHh
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLH  276 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~  276 (450)
                      +||+|.+.|+++|.++|+++|+++|+|++| .++...+..+++|++++|++|+++++++.++|+++. ++++++++...+
T Consensus       144 ~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~  223 (377)
T PRK07671        144 TNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ  223 (377)
T ss_pred             CCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCChhhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHH
Confidence            999999999999999999999999999999 545566777899999999999999988767787765 567888887766


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .    ..|..+++..+++++++++++..|++++.+++..+.++|++++.  +|.+|+++++|+|+++++++.   |+|++
T Consensus       224 ~----~~g~~~~~~~a~l~~~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~~  296 (377)
T PRK07671        224 N----STGGILGPQDSWLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQAN---GFGGM  296 (377)
T ss_pred             H----hhcCCCCHHHHHHHHcCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCce
Confidence            6    56888999999999999999999999999999999999999976  899999999999999999885   78999


Q ss_pred             EEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          355 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       355 ~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      ++|++.+.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+++|++
T Consensus       297 ~s~~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~d  371 (377)
T PRK07671        297 ISFDVGSEETANKVLERLQYFT----LAESLGAVESLISIPSQMTHASIPADRRKELGITDGLIRISVG-IEDGEDLIED  371 (377)
T ss_pred             EEEEeCCHHHHHHHHHhCCcce----EccCCCCCCeEeECCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHH
Confidence            9999987778899999999643    7999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHH
Q 013079          435 FEKALS  440 (450)
Q Consensus       435 l~~al~  440 (450)
                      |.+||+
T Consensus       372 l~~al~  377 (377)
T PRK07671        372 LAQALA  377 (377)
T ss_pred             HHHHhC
Confidence            999974

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=100.00  E-value=9.7e-55  Score=433.50  Aligned_cols=364  Identities=43%  Similarity=0.671  Sum_probs=329.2

Q ss_pred             CcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHH
Q 013079           56 GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLM  135 (450)
Q Consensus        56 ~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~  135 (450)
                      |+++|||+.|+||.+++.+.+...+...    ...|.|+|+.+|+.++|++++|+++|.+.+++++|   |++|+.+++.
T Consensus         1 ~~~~~pi~~~~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~s---G~~Ai~~~l~   73 (369)
T cd00614           1 GAVAPPIYQTSTFVFPSPAEAADLFALR----EGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSS---GMAAISTVLL   73 (369)
T ss_pred             CCcCCCccCCCceecCCHHHHHHhhcCC----cCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcC---HHHHHHHHHH
Confidence            4689999999999999988887776543    34689999999999999999999999999999999   9999999999


Q ss_pred             HhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHH
Q 013079          136 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA  215 (450)
Q Consensus       136 ~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la  215 (450)
                      +++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|+||+|.+.|+++|+++|
T Consensus        74 ~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e~~~np~g~~~dl~~i~~la  151 (369)
T cd00614          74 ALLKAGDHVVASDDLYGGTYRLFERLLPK-LGIEVTFVDPDDPEALEAAI-KPETKLVYVESPTNPTLKVVDIEAIAELA  151 (369)
T ss_pred             HHcCCCCEEEECCCCcchHHHHHHHHHhh-cCeEEEEeCCCCHHHHHHhc-CCCCeEEEEECCCCCCCeecCHHHHHHHH
Confidence            99999999999999999988777655554 79999999999999999999 77899999999999999999999999999


Q ss_pred             HhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCCCchHHHHH
Q 013079          216 HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAF  293 (450)
Q Consensus       216 ~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~  293 (450)
                      +++|+++|+|++| .++...+..+++|++++|++|+++++|..++|++++++ ++++.++..+.    ..|..+++..++
T Consensus       152 ~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~----~~g~~~~p~~a~  227 (369)
T cd00614         152 HEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL----ALGTILSPFDAW  227 (369)
T ss_pred             HHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHH----hhCCCCCHHHHH
Confidence            9999999999999 55556777889999999999999998876779999876 88888876655    467778888999


Q ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHH
Q 013079          294 ELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMN  370 (450)
Q Consensus       294 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~  370 (450)
                      ++++.++++..|++++.++++++.++|++++.  +|.+|+++++|+|++++++++   |.|++++|.++ +.+.+.+|++
T Consensus       228 ~~l~~l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~---g~g~i~s~~l~~~~~~~~~f~~  304 (369)
T cd00614         228 LLLRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS---GYGGVFSFELKGGLEAAKKFLN  304 (369)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcC---CCceEEEEEeCCCHHHHHHHHH
Confidence            98899999999999999999999999999975  789999999999999999876   78999999997 6777899999


Q ss_pred             HhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          371 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       371 ~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      .|+...    +++|+|+.+|++++|.+.+|..++++.+...|+++++||||+| .|+.+++|++|.+||+
T Consensus       305 ~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svG-lE~~~dl~~dl~~al~  369 (369)
T cd00614         305 ALKLFS----LAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVG-IEDVEDLIADLEQALK  369 (369)
T ss_pred             cCCcce----EcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHHHHHHHhhC
Confidence            999743    7999999999999999999999999889899999999999999 9999999999999973

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=100.00  E-value=9.7e-55  Score=439.18  Aligned_cols=383  Identities=33%  Similarity=0.520  Sum_probs=326.0

Q ss_pred             hHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEe
Q 013079           42 AAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT  120 (450)
Q Consensus        42 ~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~t  120 (450)
                      .+.++|+. .....+|++.|||+.++||.+++.+++...+...    ..++.|+|+.+|+.++|+++||+++|.+.+++|
T Consensus         3 ~t~~~~~~~~~~~~~~~~~~pi~~~~t~~~~~~~~~~~~~~~~----~~~~~ysr~~~p~~~~le~~lA~l~g~~~~v~~   78 (418)
T TIGR01326         3 ETLQLHAGQEPDPTTGSRAVPIYQTTSYVFDSTEHAAALFGLQ----EAGNIYSRLMNPTTDVLEQRIAALEGGVAALAV   78 (418)
T ss_pred             cceeEECCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhccC----cCCceeECCCChhHHHHHHHHHHHhCCCeEEEE
Confidence            34455543 3334468999999999999999987766654322    234789999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCC
Q 013079          121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN  200 (450)
Q Consensus       121 sg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~N  200 (450)
                      +|   |++|+..++.+++++||+|+++.+.|+++...+...... .|+++++++.+|++++++++ ++++++|++++|+|
T Consensus        79 ~s---G~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~l-~~~t~~V~le~p~N  153 (418)
T TIGR01326        79 AS---GQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKR-LGIEVRFVDPDDPEEFEKAI-DENTKAVFAETIGN  153 (418)
T ss_pred             cc---HHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCCC
Confidence            99   999999999999999999999999999887776555554 79999999988999999999 88999999999999


Q ss_pred             CcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH---------
Q 013079          201 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN---------  270 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~---------  270 (450)
                      |+|.+.|+++|.++|+++|+++|+|++| .++...+...++|++++|+||+++++|+++||+++.++.+..         
T Consensus       154 Ptg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~  233 (418)
T TIGR01326       154 PAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRPIDHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFT  233 (418)
T ss_pred             CCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCchhcCCeEEEECccccccCCccceEEEEEeccccccccccccccc
Confidence            9999999999999999999999999999 455566777789999999999999999999666654422110         


Q ss_pred             -------------------HHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeC
Q 013079          271 -------------------SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLY  329 (450)
Q Consensus       271 -------------------~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~  329 (450)
                                         .+...+.......|..+++..++.+.++++++..|++++.+++..++++|.+++.  .|.|
T Consensus       234 ~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~y  313 (418)
T TIGR01326       234 TPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNY  313 (418)
T ss_pred             CCCCccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence                               0001111122355777889999999999999999999999999999999999975  8999


Q ss_pred             CCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHH
Q 013079          330 PGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK  408 (450)
Q Consensus       330 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~  408 (450)
                      |+++++|+|+++++++..  |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+
T Consensus       314 P~l~~~~~~~~~~~~~~~--g~g~~~s~~l~~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~~~~~~h~~~~~~~~  387 (418)
T TIGR01326       314 PGLASHPHHALAKKYLPK--GFGAVLSFEIKGGREAGKKFIDALKLAS----HLANVGDAKSLVIHPASTTHQQLSEEEQ  387 (418)
T ss_pred             CCCCCCccHHHHHHhccC--CCcceEEEEecCCHHHHHHHHHhCCcce----eccccCCCCceeeCCCCCCcccCCHHHH
Confidence            999999999999998842  78999999996 5566789999999743    7999999999999999999999999999


Q ss_pred             HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          409 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       409 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      ..+|+++++||||+| .|+.+|+|++|.+||+
T Consensus       388 ~~~gi~~~liR~svG-lE~~~dl~~dl~~Al~  418 (418)
T TIGR01326       388 LKAGVTPGLIRLSVG-IENIDDIIADLEQALE  418 (418)
T ss_pred             HhcCCCCCeEEEEec-CCCHHHHHHHHHHhhC
Confidence            999999999999999 9999999999999984

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=100.00  E-value=2.3e-54  Score=436.61  Aligned_cols=385  Identities=31%  Similarity=0.458  Sum_probs=332.4

Q ss_pred             hhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.+.++| +......+|+++|||+.++||.+++.+++...+...    ...+.|+|..+|+...|++.||+++|.+.+++
T Consensus         8 ~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~al~   83 (427)
T PRK05994          8 FATLAVHAGAQPDPTTGARATPIYQTTSFVFNDADHAASLFGLQ----AFGNIYTRITNPTNAVLEERVAALEGGTAALA   83 (427)
T ss_pred             cchhheECCcCCCCCCCCccCCCcCCCCcccCCHHHHHHhhccc----cCCcceECCCCccHHHHHHHHHHHhCCCcEEE
Confidence            4455555 433344468999999999999999987777665432    22478999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   |++|+.+++.+++++||+||++.+.|++....+.....+ .|+++++++.+|++++++++ +++|++|++++|+
T Consensus        84 ~~S---G~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~ai-~~~tklV~vesp~  158 (427)
T PRK05994         84 VAS---GHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKS-FGWQVRWADADDPASFERAI-TPRTKAIFIESIA  158 (427)
T ss_pred             EcC---HHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CcCCeEEEEECCC
Confidence            999   999999999999999999999999999887766554444 79999999999999999999 8899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHH-----------
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN-----------  267 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~-----------  267 (450)
                      ||+|.+.|+++|.++|+++|+++|+|++| .++...+.++|+|+++.|+||+++++|+.+||+++....           
T Consensus       159 NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~  238 (427)
T PRK05994        159 NPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPM  238 (427)
T ss_pred             CCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCccccCCcEEEEcCccccCCCCCcEEEEEEeCCcccccccccccc
Confidence            99999999999999999999999999999 677778888999999999999999999999888764211           


Q ss_pred             ------------HHHHHH---H---HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--ee
Q 013079          268 ------------LVNSMM---D---LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KV  327 (450)
Q Consensus       268 ------------~~~~l~---~---~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v  327 (450)
                                  +.+.+.   .   .+.......|..+++..|+++.++++++..|++++.+++..+.++|+++|.  +|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v  318 (427)
T PRK05994        239 LSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWV  318 (427)
T ss_pred             ccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence                        111111   0   000012356888999999999999999999999999999999999999986  89


Q ss_pred             eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHH
Q 013079          328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE  406 (450)
Q Consensus       328 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~  406 (450)
                      .||+++++|+|+++++++..  |+|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++
T Consensus       319 ~yP~l~~~~~~~~~~~~~~~--g~g~~~sf~l~~~~~~~~~~~~~l~l~~----~~~s~G~~~sl~~~p~~~~h~~~~~~  392 (427)
T PRK05994        319 NYAGLPDDPYHALAQKYSPK--GAGAVFTFGLKGGYEAGVKLVSSLKLFS----HLANIGDTRSLVIHPASTTHRQLTDE  392 (427)
T ss_pred             ECCCCCCCccHHHHHHhcCC--CceEEEEEEecCCHHHHHHHHHhCCcce----eccccCCCcceeeCCCCCCcccCCHH
Confidence            99999999999999998642  78999999997 5677889999999743    79999999999999999999999999


Q ss_pred             HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          407 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       407 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      .+...|+++++||||+| +|+.+++|++|.+||++
T Consensus       393 ~~~~~gi~~~liRlsvG-lE~~~dli~dl~~Al~~  426 (427)
T PRK05994        393 QKVAAGAGPDVVRLSIG-IEDVDDIIADLEQALAK  426 (427)
T ss_pred             HHHhcCCCCCcEEEEec-cCCHHHHHHHHHHHHhh
Confidence            99999999999999999 99999999999999975

>PRK06460 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-54  Score=432.38  Aligned_cols=370  Identities=30%  Similarity=0.518  Sum_probs=319.6

Q ss_pred             ChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      .+.+.++|... ...+|++.|||+.++||.+++.               ..|.|+|..+|..++|+++||+++|.+..++
T Consensus         2 ~~~t~~~~~~~-~~~~~~~~~pi~~~~~~~~~~~---------------~~~~y~r~~~p~~~~L~~~lA~l~g~~~~v~   65 (376)
T PRK06460          2 KDATRTVREDI-DEATGAITTPIYQTTAYHYPEG---------------EKYRYSREANPTVLELTKKIVELENAEMGVA   65 (376)
T ss_pred             CcceeeeecCC-CCCCCCccCCccCCcceeeCCC---------------CCcceeCCCCccHHHHHHHHHHHhCCCcEEE
Confidence            35555556332 2346899999999999988762               2588999999999999999999999988888


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   |++|+..++.+++++||+|+++.+.|++....+...... .|+++..++.++.+.+++.+ ++++++|++++|+
T Consensus        66 ~~s---G~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~-~G~~v~~~~~~~~~~l~~~~-~~~tklV~l~sp~  140 (376)
T PRK06460         66 FSS---GMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKN-WGVNVDASNPGSDNIIEKAK-SKRYDVVFVENIT  140 (376)
T ss_pred             eCC---HHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHh-hCcEEEEECCCCHHHHHHhc-CCCceEEEEECCC
Confidence            899   999999999999999999999998887665555444444 78999998877766666655 6789999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG  278 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~  278 (450)
                      ||||.+.|+++|.++|+++|+++|+|++| .++...+...++|+++.|+||+++++++.++|++++++++++.++..+. 
T Consensus       141 NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~-  219 (376)
T PRK06460        141 NPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRR-  219 (376)
T ss_pred             CCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHH-
Confidence            99999999999999999999999999999 4444455566899999999999987765456999999999988887665 


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                         ..+..+++..++.++++.+++..|++++.++++++.++|++++.  +|.||+++++|+|++++++++   |+|++++
T Consensus       220 ---~~g~~~~~~~a~~~l~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---g~gg~~s  293 (376)
T PRK06460        220 ---TLGTSLDPHAAYLTLRGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLK---GFGGVLS  293 (376)
T ss_pred             ---hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCC---CCceEEE
Confidence               45666777788888889999999999999999999999999976  899999999999999999886   7899999


Q ss_pred             EEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          357 LDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       357 ~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      |+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+.++|+++++||||+| .||.++++++|
T Consensus       294 ~~~~~~~~~~~~~~~~l~~~~----~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl  368 (376)
T PRK06460        294 FEVNGGQESALKVMKSLKLII----PAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVG-IEDVNDLIEDL  368 (376)
T ss_pred             EEEcCcHHHHHHHHHhCCcce----eccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHH
Confidence            9997 5567889999998643    7999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHh
Q 013079          436 EKALSRM  442 (450)
Q Consensus       436 ~~al~~~  442 (450)
                      ++||.++
T Consensus       369 ~~al~~~  375 (376)
T PRK06460        369 DRALSTL  375 (376)
T ss_pred             HHHHHhh
Confidence            9999864

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=100.00  E-value=2.4e-54  Score=429.28  Aligned_cols=360  Identities=25%  Similarity=0.440  Sum_probs=314.6

Q ss_pred             CCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHH
Q 013079           53 GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISS  132 (450)
Q Consensus        53 ~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~  132 (450)
                      ..+|++.|||++++||.+++.+++.  +     . ...|.|+|.+||+...|+++||+++|++.+++|+|   |++|+.+
T Consensus        12 ~~~~~~~~pi~~~st~~~~~~~~~~--~-----~-~~~~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~s---G~~Ai~~   80 (377)
T TIGR01324        12 FSQGSVNPPLQRASTVLFDSHAAQR--R-----A-KGELTYGRRGTLTHFALQDAMCELEGGAGCYLYPS---GLAAVTN   80 (377)
T ss_pred             CCCCCccCCeeCCCceeeCChhhhc--C-----C-cCCCcccCCCCccHHHHHHHHHHHhCCCcEEEECc---HHHHHHH
Confidence            4468999999999999998854331  1     1 34689999999999999999999999999999999   9999999


Q ss_pred             HHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHH
Q 013079          133 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS  212 (450)
Q Consensus       133 al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~  212 (450)
                      ++.+++++||+|+++++.|+++...+.....+ .|+++.+++..+.+++++++ +++|++|++++|+||+|.+.|+++|+
T Consensus        81 al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~-~gi~v~~~d~~~~e~l~~~i-~~~tklV~lesp~Np~g~~~dl~~I~  158 (377)
T TIGR01324        81 SILAFVKAGDHVLMVDSAYEPTRYFCDIVLKR-MGVDITYYDPLIGEDIATLI-QPNTKVLFLEAPSSITFEIQDIPAIA  158 (377)
T ss_pred             HHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHh-cCcEEEEECCCCHHHHHHhc-CCCceEEEEECCCCCCCcHHHHHHHH
Confidence            99999999999999999999887766444444 78999998876668899999 88999999999999999999999999


Q ss_pred             HHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHH
Q 013079          213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV  291 (450)
Q Consensus       213 ~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~  291 (450)
                      ++|+++|+++++|++| .+..+.+.++|+|++++|++|+++++++.+||+++.+++.++.+.....    ..|..+++..
T Consensus       159 ~la~~~g~~livD~t~a~g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~----~~G~~l~p~~  234 (377)
T TIGR01324       159 KAARNPGIVIMIDNTWAAGLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSY----LMGQMVDADD  234 (377)
T ss_pred             HHHHHcCCEEEEECCCccccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHH----HhCCCCCHHH
Confidence            9999999999999999 6667788999999999999999999998888999998887777764443    6788899999


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--CHHHHHH
Q 013079          292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--TEEKANR  367 (450)
Q Consensus       292 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--~~~~~~~  367 (450)
                      ++..+++++++..|++++.+++..++++|++++.  +|+||+++++|+|++++++++   |+|++++|+++  +.+.+.+
T Consensus       235 a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---~~g~~~s~~l~~~~~~~~~~  311 (377)
T TIGR01324       235 AYTTLRGLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFS---GSSGLFSFVLQRLTQKQVHA  311 (377)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhcc---CCCceEEEEECCCCHHHHHH
Confidence            9999999999999999999999999999999986  899999999999999999886   78999999997  4567889


Q ss_pred             HHHHhhccccccccccccccccccccccc-cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          368 LMNYLQNYAQFGFMAVSLGYYETLMSCSG-SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       368 ~~~~l~~~~~~g~i~vs~G~~~s~~~~~~-~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      |++.|+..   + +++|+|+.+|+++++. +++|.     .+...|+.+++||||+| .|+.+|+|++|.+||+++
T Consensus       312 ~~~~l~~~---~-~~~slG~~~sl~~~~~~~~~~~-----~~~~~~~~~~liR~svG-lE~~~dl~~dl~~al~~~  377 (377)
T TIGR01324       312 FLDHLQLF---G-LGYSWGGYESLALCNQPELGHR-----PNIKRNLEGPLIRVHIG-LENVDDLKADLKAGFEAI  377 (377)
T ss_pred             HHHhCCcc---e-EeccCCCccceeecCCCCCCHH-----HHHhccCCCCEEEEEeC-CCCHHHHHHHHHHHHhcC
Confidence            99999973   3 8999999999987432 23332     23456788899999999 999999999999999864

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=100.00  E-value=4.6e-54  Score=428.72  Aligned_cols=359  Identities=31%  Similarity=0.475  Sum_probs=320.3

Q ss_pred             CCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHH
Q 013079           54 EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSV  133 (450)
Q Consensus        54 ~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~a  133 (450)
                      .+|+++|||+.++||.+++.+.            ...|.|+|.++|+++++++.+|+++|++.+++++|   |+.|++++
T Consensus        14 ~~~~~~~pi~~~~~~~~~~~~~------------~~~~~Y~r~~~p~~~~le~~la~l~g~~~~l~~~s---G~~al~~~   78 (378)
T TIGR01329        14 PYDASSMPIYQTATFKQPLAIE------------NGPYDYTRSGNPTRTALESLLAKLDKADRAFAFSS---GMAALDVI   78 (378)
T ss_pred             CCCCcCCCeecCcceecCCccc------------cCCCccCCCCChHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHH
Confidence            3689999999999998876321            13588999999999999999999999999999999   99999987


Q ss_pred             HHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHH
Q 013079          134 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSR  213 (450)
Q Consensus       134 l~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~  213 (450)
                      +. ++++||+|+++++.|+++...+.....+ .|+++++++..|++++++++ +++|++|++++|+||+|.+.|+++|++
T Consensus        79 l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~vd~~d~~~le~~i-~~~tklv~le~psnptg~v~dl~~I~~  155 (378)
T TIGR01329        79 TR-LLNNGDEIIAGDDLYGGTDRLLTQVVPR-SGVVVVHVDTTDLDKVKAAL-GPKTKLVLLESPTNPLQKIVDIRKISE  155 (378)
T ss_pred             HH-HhCCCCEEEEcCCCchHHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CcCceEEEEECCCCCCCeeecHHHHHH
Confidence            76 7899999999999999988776555454 79999999999999999999 789999999999999999999999999


Q ss_pred             HHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHH
Q 013079          214 LAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKV  291 (450)
Q Consensus       214 la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~  291 (450)
                      +|+++|+++|+|++| .+....+..+|+|++++|++|+++++++.++|+++. ++.+.++++..+.    ..|..+++..
T Consensus       156 la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~----~~G~~~~~~~  231 (378)
T TIGR01329       156 MAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN----STGSGLAPFD  231 (378)
T ss_pred             HHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH----hcCCcCCHHH
Confidence            999999999999998 666677788899999999999999887666799876 5556677766554    4677788888


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHH
Q 013079          292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLM  369 (450)
Q Consensus       292 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~  369 (450)
                      ++++.++++++..|+++..+++..++++|++++.  ++.+|+++++|+|+++++++.   |+|++++|.+.+.+.+.+|+
T Consensus       232 a~l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~---g~~~~~sf~~~~~~~~~~~~  308 (378)
T TIGR01329       232 CWLLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAK---GAGSVLSFETGSVALSKRLV  308 (378)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CcceEEEEEECCHHHHHHHH
Confidence            8888999999999999999999999999999986  899999999999999999874   78999999998766688999


Q ss_pred             HHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          370 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       370 ~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      +.|+.   |+ +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| .|+.+|++++|++||+++
T Consensus       309 ~~L~~---~~-i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG-lE~~~dl~~dl~~al~~~  376 (378)
T TIGR01329       309 EATKL---FS-ITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVG-IEDVDDLISDLDIAFVTA  376 (378)
T ss_pred             HhCcC---cc-cccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHhc
Confidence            99986   43 8999999999999999999999999999999999999999999 999999999999999865

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=100.00  E-value=5.9e-54  Score=429.41  Aligned_cols=373  Identities=35%  Similarity=0.501  Sum_probs=324.1

Q ss_pred             CCChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079           38 WEDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA  116 (450)
Q Consensus        38 ~~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~  116 (450)
                      ++++.+++++.. .....+|+++|||+.++||.+++.+.+           .+.|.|+|+++|.+++|+++||+++|.+.
T Consensus        10 ~~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~-----------~~~~~Y~r~~~p~~~~Le~~lA~~~g~~~   78 (388)
T PRK07811         10 NQGFATRAIHAGYEPDPATGAVNPPIYASSTFAQDGVGGL-----------RGGYEYARTGNPTRTALEEQLAALEGGAY   78 (388)
T ss_pred             CCCcccceeeCCCCCCCCCCCccCCccCCcceecCCcccc-----------cCCCcccCCCCccHHHHHHHHHHHhCCCc
Confidence            345666666643 334457899999999999988764321           13478999999999999999999999999


Q ss_pred             EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      .++++|   |++|+.+++.+++++||+|+++.+.|+++...+.....+ .|+++.+++..|++++++++ +++|++|+++
T Consensus        79 ~i~~~s---G~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~gi~~~~~d~~d~e~l~~~i-~~~tklV~ie  153 (388)
T PRK07811         79 GRAFSS---GMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTR-WGVEYTPVDLSDLDAVRAAI-TPRTKLIWVE  153 (388)
T ss_pred             eEEeCC---HHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcC-CCeEEEEeCCCCHHHHHHhc-CcCCeEEEEE
Confidence            999999   999999999999999999999999999887777655555 79999999988999999999 7899999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHH
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMD  274 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~  274 (450)
                      +|+||+|.+.|+++|+++|+++|+++|+|++| .+....+...++|++++|++|+++++++.+||+++. ++++.+.+..
T Consensus       154 ~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~  233 (388)
T PRK07811        154 TPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPLALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAF  233 (388)
T ss_pred             CCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCchhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHH
Confidence            99999999999999999999999999999999 444456777899999999999999988777798876 5667676665


Q ss_pred             HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      .+.    ..|...++..++++.+.++++..|+++..+++..+.++|++++.  +|.||+++++|+|+++++++.   |+|
T Consensus       234 ~~~----~~g~~~s~~~a~l~~~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~---g~g  306 (388)
T PRK07811        234 LQN----GAGAVPGPFDAYLTLRGLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMR---GFG  306 (388)
T ss_pred             HHH----hcCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcC---CCC
Confidence            544    45667778888888889999999999999999999999999986  899999999999999999885   799


Q ss_pred             cEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          353 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       353 ~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      ++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++.+   ..|+++++||||+| .|+.+++
T Consensus       307 ~~~s~~~~~~~~~~~~f~~~l~~~~----~~~s~G~~~sl~~~~~~~~~~~~~~~---~~gi~~~liR~svG-lE~~~dl  378 (388)
T PRK07811        307 GMVSVRLAGGEEAARDFCARTKVFT----LAESLGGVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADL  378 (388)
T ss_pred             ceEEEEeCCCHHHHHHHHHhCCcce----eeccCCCCcceEeCCcccCcccCCHh---hcCCCCCEEEEEeC-CCCHHHH
Confidence            99999997 5677889999999743    79999999999999999999988855   35999999999999 9999999


Q ss_pred             HHHHHHHHHH
Q 013079          432 WSQFEKALSR  441 (450)
Q Consensus       432 i~~l~~al~~  441 (450)
                      +++|.+||++
T Consensus       379 ~~dl~~al~~  388 (388)
T PRK07811        379 LADLEQALGQ  388 (388)
T ss_pred             HHHHHHHhhC
Confidence            9999999863

>PRK08064 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=1.3e-53  Score=427.30  Aligned_cols=377  Identities=33%  Similarity=0.511  Sum_probs=330.2

Q ss_pred             CChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      +++.+.+++.. .....+|++++||+.|+||.+++.+.            ...|.|+|..+|..++++++||+++|++..
T Consensus         5 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~------------~~~~~y~r~~~p~~~~le~~lA~l~g~~~~   72 (390)
T PRK08064          5 YSIDTLLLHNQYKHDKQTGAVNVPIYHASTFHQFDFDT------------FGKYDYSRSGNPTREALEDIIAELEGGTKG   72 (390)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCcccCcceecCcccc------------cCCCcccCCCChhHHHHHHHHHHHhCCCCe
Confidence            34556566633 33445799999999999998877532            124789999999999999999999999888


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      +++++   |+.|+.+++. ++++||+|+++++.|+++...+.....+ .|+++.+++.+|++++++++ +++|++|++++
T Consensus        73 v~~~s---G~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~l-~~~tklV~l~~  146 (390)
T PRK08064         73 FAFAS---GMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSR-FGIEHTFVDMTNLEEVAQNI-KPNTKLFYVET  146 (390)
T ss_pred             EEECC---HHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCceEEEEEC
Confidence            99999   9999998886 7789999999999999877766555554 79999999998999999999 88999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHH
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDL  275 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~  275 (450)
                      |+||||.+.|+++|.++|+++|+++|+|++| .+....+.++|+|+++.|+||+++++++.++|+++. ++++++.++..
T Consensus       147 p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~  226 (390)
T PRK08064        147 PSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLDLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFL  226 (390)
T ss_pred             CCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCchhhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHH
Confidence            9999999999999999999999999999999 444456677899999999999999887766798765 56788888777


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      +.    ..|...++..++...++++++..|++++.+++..+.++|++++.  ++.+|+++++|+|++++++++   |+|+
T Consensus       227 ~~----~~g~~~~~~~a~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~---g~gg  299 (390)
T PRK08064        227 QN----SFGAVLGVQDCWLVLRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQAT---SAGA  299 (390)
T ss_pred             HH----hcCCCCCHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCC---Ccce
Confidence            66    56777888888888899999999999999999999999999985  899999999999999999776   7999


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      +++|++++.+.+.+|++.++...    +++|+|+.+|++++|++++|..++.+.+..+|+++++||+|+| .|+++++|+
T Consensus       300 ~~sf~~~~~~~~~~f~~~l~l~~----~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvG-le~~~dli~  374 (390)
T PRK08064        300 VLSFTLQSEEAVRQFVSHVKLPV----FAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVG-LENVDDLIA  374 (390)
T ss_pred             EEEEEECCHHHHHHHHHhCCcce----EcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHH
Confidence            99999998778889999998633    6999999999999999999999999999899999999999999 999999999


Q ss_pred             HHHHHHHHhhhc
Q 013079          434 QFEKALSRMQDS  445 (450)
Q Consensus       434 ~l~~al~~~~~~  445 (450)
                      +|.+||+++++-
T Consensus       375 dl~~Al~~~~~~  386 (390)
T PRK08064        375 DFEQALSYVEEP  386 (390)
T ss_pred             HHHHHHHhcccC
Confidence            999999997543

>PRK07050 cystathionine beta-lyase; Provisional

Probab=100.00  E-value=7.2e-53  Score=421.74  Aligned_cols=376  Identities=24%  Similarity=0.330  Sum_probs=324.3

Q ss_pred             ChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.+.++|.. .....+|+++||||.++||.+++.+++...+.+.    ...|.|+|+++|++++|++.+|+++|++.++
T Consensus         9 ~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~~~~~~~~~----~~~~~Y~r~~~pt~~~Le~~lA~l~g~~~~l   84 (394)
T PRK07050          9 ALQTRIVQPDDQIPPGFRSFVTPVARASTVVFPDLATMRALDWRQ----DVQWRYGLHATPTSLALAQRLAEIEGGRHAL   84 (394)
T ss_pred             CccchheECCCCCCCCCCCccCCeeCCcceecCCHHHHHhhcccc----cCCcccCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence            4656666643 3334578999999999999999988887666432    2458899999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +|+|   |++|+.+++.+++++||+|+++++.|.++...+...... .|+++.+++..+.+++++++ +++|++|++++|
T Consensus        85 ~~~s---gt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~Gi~v~~vd~~~~~~l~~~i-~~~tklV~le~p  159 (394)
T PRK07050         85 LQPS---GLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD-FGITVRFYDPLIGAGIADLI-QPNTRLIWLEAP  159 (394)
T ss_pred             Eecc---HHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh-cCeEEEEECCCCHHHHHHhc-CCCCeEEEEECC
Confidence            9999   999999999999999999999999999988766444444 79999999877888899999 889999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHh
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLH  276 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~  276 (450)
                      +||+|.+.++++|+++|+++|+++|+|++| .+..+++..+|+|++++|++|+++++++.+||+++. +++++++++..+
T Consensus       160 ~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~  239 (394)
T PRK07050        160 GSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR  239 (394)
T ss_pred             CCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH
Confidence            999999999999999999999999999999 666788888999999999999999887766787654 678888887766


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .    ..|..+++..++.++++++++..|++++.+++.++.++|++++.  ++.+|+++++|+|.++++++.   ++|++
T Consensus       240 ~----~~G~~~~~~~a~l~lr~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---~~g~~  312 (394)
T PRK07050        240 M----RLGIGVSADDCSLVLRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFT---GAGGL  312 (394)
T ss_pred             H----hcCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCC---CCceE
Confidence            6    56888889999999999999999999999999999999999975  899999999999999998775   78999


Q ss_pred             EEEEeCC---HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          355 LCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       355 ~~~~l~~---~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      ++|.++.   .+.+.+|++.|+...    +++|+|+.+|++. |.++++....     ...+.+++||||+| .|+.+++
T Consensus       313 ~s~~l~~~~~~~~~~~~~~~l~~~~----~~~s~G~~~sl~~-~~~~~~~~~~-----~~~~~~~~iR~svG-lE~~~dl  381 (394)
T PRK07050        313 FSVVFDERYSPAQVDAFVEALELFA----IGWSWGGACSLAM-PYDVASMRTA-----KWPHRGTLVRLYIG-LEDEADL  381 (394)
T ss_pred             EEEEECCCCCHHHHHHHHHcCCCCe----eccccCCccceEe-eCcccccchh-----hcCCCCCEEEEEeC-cCCHHHH
Confidence            9999973   467899999999743    8999999999987 6554444432     23366799999999 9999999


Q ss_pred             HHHHHHHHHHh
Q 013079          432 WSQFEKALSRM  442 (450)
Q Consensus       432 i~~l~~al~~~  442 (450)
                      +++|.+||++.
T Consensus       382 ~~dl~~al~~~  392 (394)
T PRK07050        382 IADLEQALEAA  392 (394)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

>PRK06434 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=6.1e-53  Score=418.17  Aligned_cols=371  Identities=31%  Similarity=0.497  Sum_probs=321.4

Q ss_pred             hhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.++++|+. .....+|++++||+.++||.+++.+.+.......    ...|.|+|.++|++++|++++|+++|++.+++
T Consensus         9 ~~t~~~~~~~~~~~~~~~~~~pI~~ss~~~~~~~~~~~~~~~~~----~~~~~Y~r~~~P~~~~lE~~la~leg~~~av~   84 (384)
T PRK06434          9 FNTRAVQSGELRDPRFGNVTTPIFETSTFVYPNSEKEAYMDSTR----GMPYIYTRWGNPTVQAFEEKYAVLENAEHALS   84 (384)
T ss_pred             cccceeECCCCCCCCCCCccCCeeCCcceecCChHHhhhccccc----cCCcceeCCCChhHHHHHHHHHHHhCCCcEEE
Confidence            556666644 3334578999999999999999876654222111    23589999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   ||.|+++++.+++++||+||++...|+++...+...+.+ .|+++++++.++.+.+.  +..+++++|++++|+
T Consensus        85 ~sS---G~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~-~Gi~v~fvd~~~~~~~~--l~~~~tklv~~e~~s  158 (384)
T PRK06434         85 FSS---GMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT-LGIHVDYIDTDRLNSLD--FDPSNYDLIYAESIT  158 (384)
T ss_pred             eCC---HHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHh-cCcEEEEECCCChhhee--ecCCCeeEEEEEcCC
Confidence            999   999999999999999999999999999888777666665 89999999987666655  423479999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQ  277 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~  277 (450)
                      ||++.+.|+++|+++|++++  +++|+++ +++...|...|+|++++|.+|+++++++.+||+++. ++++.++++..+.
T Consensus       159 npt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~  236 (384)
T PRK06434        159 NPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK  236 (384)
T ss_pred             CCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH
Confidence            99999999999999999998  5679999 777778888999999999999999988878898866 5567777765554


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|..+++..|++.+++++++..|++++++++..+.++|+++|.  +|.||+++      +++++++   |+|+++
T Consensus       237 ----~~G~~~~~~~A~l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~------~~~~~~~---g~g~~~  303 (384)
T PRK06434        237 ----TLGSNPDPIQAYLALRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTE------IGKKVLR---GFGGML  303 (384)
T ss_pred             ----hcCCCCCHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChH------HHHHhcC---CCCceE
Confidence                56778889999999999999999999999999999999999986  89999974      7888875   799999


Q ss_pred             EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      +|++++.+.+.+|++.|+...    +++|+|+.+|++++|.+++|..++++.+..+|+++++||||+| +|+++|+|++|
T Consensus       304 sf~l~~~~~~~~f~~~l~l~~----~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvG-lEd~~dLi~dl  378 (384)
T PRK06434        304 SFELRSMEDVHKFIRNLEIPM----VAASLGGVESLITLPVETSHSSLSPEERERLGISDNLVRFSIG-IEDIDDLIKDI  378 (384)
T ss_pred             EEEECCHHHHHHHHHhCCcce----EccCCCCCCeeeECCCccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHHHHHHH
Confidence            999987777899999999743    7999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHH
Q 013079          436 EKALSR  441 (450)
Q Consensus       436 ~~al~~  441 (450)
                      .+||.+
T Consensus       379 ~~Al~~  384 (384)
T PRK06434        379 ENALSK  384 (384)
T ss_pred             HHHhcC
Confidence            999863

>PRK05968 hypothetical protein; Provisional

Probab=100.00  E-value=3.2e-51  Score=409.85  Aligned_cols=375  Identities=32%  Similarity=0.469  Sum_probs=325.3

Q ss_pred             hHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEec
Q 013079           42 AAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTA  121 (450)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~ts  121 (450)
                      ...++|+.+...++++++|||+.++||.+++.+++...+...    ...|.|+|+.+|++++|++.+|+++|++.+++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~   85 (389)
T PRK05968         10 LAALITAHDEGNAFDAVVPPIFQTSLFTFDSYDEMEDVYAGE----KVRPIYSRGDNPTVRAFEEMLAKLEGAEDARGFA   85 (389)
T ss_pred             hhheeecCCCccCCCCccCCccCCcceecCCHHHHHHhhcCC----CCCccccCCCChhHHHHHHHHHHHhCCCcEEEEC
Confidence            456667666667889999999999999999998888887643    2458899999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCC
Q 013079          122 SDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP  201 (450)
Q Consensus       122 g~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~Np  201 (450)
                      |   |+.|+.+++.+++++||+|+++.+.|+++...+...... .|+++++++.+|++++++++  ++|++|++++|+|+
T Consensus        86 s---G~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i--~~tklV~ie~pt~~  159 (389)
T PRK05968         86 S---GMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKR-MGVEVDYVDGRDEEAVAKAL--PGAKLLYLESPTSW  159 (389)
T ss_pred             C---HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCceEEEeCCCCHHHHHHhc--ccCCEEEEECCCCC
Confidence            9   999999999988999999999999999987766555544 79999999999999999987  47899999999999


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh
Q 013079          202 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL  280 (450)
Q Consensus       202 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~  280 (450)
                      ++.+.|+++|+++|+++|+++|+|++| .+....+..+|+|++++|+||+++++|+.+||+++.+++++++++..+..  
T Consensus       160 ~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~--  237 (389)
T PRK05968        160 VFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYP--  237 (389)
T ss_pred             CCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCchhcCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHH--
Confidence            999999999999999999999999999 54446677789999999999999998876679999998888887654331  


Q ss_pred             hccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          281 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       281 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                       ..|..+++..|+.++++++++..|++++.++++++.++|++++.  .+.+|+++++|..     .+   .|+|++++|+
T Consensus       238 -~~g~~~~~~~A~~~l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~-----~~---~g~g~~~sf~  308 (389)
T PRK05968        238 -YLGAKLSPFEAWLLLRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPA-----GL---SGTSGLFSFI  308 (389)
T ss_pred             -hCCCCCChHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHH-----hC---CCCceEEEEE
Confidence             34567788889999999999999999999999999999999975  7888999988842     22   3789999999


Q ss_pred             eCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCC-CHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013079          359 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL-NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK  437 (450)
Q Consensus       359 l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~-~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~  437 (450)
                      +++...+.+|++.|+..+    +++|+|+.||+++ |+++++... +.+.+...|+++++||+|+| .|+++++|++|++
T Consensus       309 ~~~~~~~~~f~~~L~~~~----~~~s~G~~~slv~-p~~~~~~~~~~~~~~~~~gi~~~liR~SvG-lE~~~dl~~dl~~  382 (389)
T PRK05968        309 FREGIDVRAFADALKLFR----LGVSWGGHESLVV-PAEVVLQQKAQPNSAARFGVSPRSVRLHVG-LEGTEALWADLEQ  382 (389)
T ss_pred             ECCHHHHHHHHHhCCccE----EecCCCCCCceee-eCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHH
Confidence            985556889999998643    8999999999998 888887774 47778889999999999999 9999999999999


Q ss_pred             HHHHhh
Q 013079          438 ALSRMQ  443 (450)
Q Consensus       438 al~~~~  443 (450)
                      ||++..
T Consensus       383 al~~~~  388 (389)
T PRK05968        383 ALAAAS  388 (389)
T ss_pred             HHHHhh
Confidence            998764

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=1.2e-51  Score=408.38  Aligned_cols=354  Identities=31%  Similarity=0.472  Sum_probs=308.4

Q ss_pred             CChhHHHhhcCC-CCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           39 EDPAAALASARH-EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        39 ~~~~~~~~~~~~-~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      +++.+.++|+.. ....+++++||||.|+||.+++.           +. ...|.|+|+++|++++|+++||+++|++.+
T Consensus         5 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~st~~~~~~-----------~~-~~~~~Y~R~~~p~~~~le~~lA~leg~~~~   72 (364)
T PRK07269          5 LHINTILAQAGIKSDEATGALVTPLHFSTTYQHPEF-----------GQ-STGFDYTRTKNPTRAKLEETLAAIESADYA   72 (364)
T ss_pred             CCcccceeeCCCCCCCCCCCccCCccCCcceecCCC-----------CC-cCCcceeCCCCccHHHHHHHHHHHhCCCeE
Confidence            345666667543 33446899999999999988762           11 235899999999999999999999999999


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      ++++|   |++|+.+++. ++++||+||++.+.|++....+....+. .++.+.+.  .|++++++++ +++|++|++++
T Consensus        73 v~~~s---G~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~-~~~~~~~~--~d~~~l~~~i-~~~TklV~les  144 (364)
T PRK07269         73 LATSS---GMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKE-GRFHFTYA--NTEEELIAAI-EEDTDIVYIET  144 (364)
T ss_pred             EEeCC---HHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhc-CcEEEEec--CCHHHHHHhc-CcCceEEEEEC
Confidence            99999   9999999884 6799999999999999888766544443 45666664  4899999999 88999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHH
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDL  275 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~  275 (450)
                      |+||+|.+.|+++|+++|+++|+++++|++| .++...|...|+|++++|+||+++++|+.+||+++. ++++.++++..
T Consensus       145 P~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~  224 (364)
T PRK07269        145 PTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYN  224 (364)
T ss_pred             CCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHH
Confidence            9999999999999999999999999999998 666678888899999999999999999888899876 56777777655


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      +.    ..|..+++..|+++.++++++..|++++++++..+.++|++++.  +|.||+                   .|+
T Consensus       225 ~~----~~G~~~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg-------------------~gg  281 (364)
T PRK07269        225 LN----TTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG-------------------KGG  281 (364)
T ss_pred             HH----HhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC-------------------cCc
Confidence            44    56788899999999999999999999999999999999999874  788885                   688


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      +++|.+.+.+.+.+|++.++...    +++|+|+.+|++++|++.+|..++.+.+..+|+++++||||+| .|+.+++|+
T Consensus       282 ~~sf~~~~~~~~~~f~~~l~~~~----~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvG-lE~~~dli~  356 (364)
T PRK07269        282 MISFKVADETRIPHILNSLKVFT----FAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIG-IEDARDLIA  356 (364)
T ss_pred             EEEEEECCHHHHHHHHHhCCcce----EccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHH
Confidence            99999987777889999998643    7999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHH
Q 013079          434 QFEKALS  440 (450)
Q Consensus       434 ~l~~al~  440 (450)
                      +|++||+
T Consensus       357 dl~~al~  363 (364)
T PRK07269        357 DLKQALE  363 (364)
T ss_pred             HHHHHhc
Confidence            9999985

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=100.00  E-value=2.5e-49  Score=393.82  Aligned_cols=356  Identities=29%  Similarity=0.490  Sum_probs=307.1

Q ss_pred             hhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      +.+.++|.. .....+|+++|||+.+|||.+++.           ++ ...|.|+|+++|+.++|+++||+++|++..++
T Consensus         5 ~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~-----------~~-~~~~~y~r~~~pt~~~le~~la~l~g~~~~~~   72 (366)
T PRK08247          5 IETKLAQIGNRSDERTGTVNPPVYFSTAYRHEGI-----------GE-STGFDYSRTGNPTRGVLEQAIADLEGGDQGFA   72 (366)
T ss_pred             cchhheeCCCCCCCCCCCccCCcccCcccccCCC-----------CC-cCCccccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence            345555533 333457999999999999987662           11 23589999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   |++|+.+++ .++++||+|+++++.|++....+.....+ .|+++.+++..|++++++++ +++|++|++++|+
T Consensus        73 ~~s---G~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~-~G~~v~~vd~~d~~~l~~~i-~~~tklv~le~P~  146 (366)
T PRK08247         73 CSS---GMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKK-WNVRFVYVNTASLKAIEQAI-TPNTKAIFIETPT  146 (366)
T ss_pred             EcC---HHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhc-cCceEEEECCCCHHHHHHhc-ccCceEEEEECCC
Confidence            999   999999876 57789999999999999987777655555 79999999999999999999 7899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ  277 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~  277 (450)
                      ||+|.+.++++|+++|+++|+++|+|++| .++...+...++|++++|+||++++++..++|+++.+ +++.+.+...+.
T Consensus       147 NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~  226 (366)
T PRK08247        147 NPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPLEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQN  226 (366)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCchhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHH
Confidence            99999999999999999999999999999 6666677777999999999999998877667999886 677777776655


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..+..+++..++++.++++++..|+++++++++.+.++|++++.  .+.+|+                   .|+++
T Consensus       227 ----~~g~~~s~~~a~l~~~~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~-------------------~gg~~  283 (366)
T PRK08247        227 ----AAGAVLSPFDSWLLIRGMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG-------------------RGGML  283 (366)
T ss_pred             ----hcCCCCChHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC-------------------cCcEE
Confidence                45666777788888889999999999999999999999999864  466664                   57899


Q ss_pred             EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      +|.+++.+.+.+|++.++...    +++|+|+.+|++.+|++.+|..++++.+...|+++++||||+| .|+.++++++|
T Consensus       284 sf~~~~~~~~~~~~~~l~~~~----~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svG-lE~~~dl~~dl  358 (366)
T PRK08247        284 SFRLQDEEWVNPFLKSLKLIT----FAESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVG-IENVEDLIADL  358 (366)
T ss_pred             EEEECCHHHHHHHHHcCCcce----EccCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHH
Confidence            999987666778999888633    7999999999999999999999999999899999999999999 99999999999


Q ss_pred             HHHHHHh
Q 013079          436 EKALSRM  442 (450)
Q Consensus       436 ~~al~~~  442 (450)
                      ++||+++
T Consensus       359 ~~al~~~  365 (366)
T PRK08247        359 KQAFKQV  365 (366)
T ss_pred             HHHHhhc
Confidence            9999864

>PRK07582 cystathionine gamma-lyase; Validated

Probab=100.00  E-value=1.7e-49  Score=394.45  Aligned_cols=356  Identities=28%  Similarity=0.364  Sum_probs=300.7

Q ss_pred             HHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEec
Q 013079           43 AALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTA  121 (450)
Q Consensus        43 ~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~ts  121 (450)
                      ++++| +......+|+++|||+.++||.+++.+        .    ...|.|+|+++|...+|+++||+++ .+.+++++
T Consensus         6 t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~--------~----~~~~~y~ry~~p~~~~Le~~lA~l~-~~~~v~~~   72 (366)
T PRK07582          6 TRSVHAGGPEAVPGEPVLPGPVFAAPYHLSPGE--------P----TGPDTYGRASNPTWRALEAALGELE-GAEALVFP   72 (366)
T ss_pred             cceeeCCCCCCCCCCCccCCccccceEEccCcc--------c----cCCceeECCCCccHHHHHHHHHHHc-CCCEEEEC
Confidence            44455 323234468999999999999988521        1    2347799999999999999999999 67788889


Q ss_pred             ChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCC
Q 013079          122 SDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP  201 (450)
Q Consensus       122 g~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~Np  201 (450)
                      +   |++|+.+++.+++++||+|+++.+.|+++...+...+.+ .|+++++++.++...   .+ .+++++|++++|+||
T Consensus        73 s---G~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~~~~~---~~-~~~t~lV~le~p~NP  144 (366)
T PRK07582         73 S---GMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP-LGVTVREAPTAGMAE---AA-LAGADLVLAETPSNP  144 (366)
T ss_pred             C---HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc-CeEEEEEECCCChHH---Hh-ccCceEEEEECCCCC
Confidence            9   999999999999999999999999999988776555554 799999998765432   34 468999999999999


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhh
Q 013079          202 TLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA  279 (450)
Q Consensus       202 tG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~  279 (450)
                      +|.+.|+++|+++|+++|+++++|++| .+....+.++++|++++|+||+++++++.++||++. ++++++++...+.  
T Consensus       145 tg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~--  222 (366)
T PRK07582        145 GLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRL--  222 (366)
T ss_pred             CCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHH--
Confidence            999999999999999999999999998 556667778899999999999998765444599886 5778888877666  


Q ss_pred             hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013079          280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL  357 (450)
Q Consensus       280 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~  357 (450)
                        ..|..+++..++++.++++++..|++++.+++..++++|++++.  +|.||+++++|+|+++++++.   |+|++++|
T Consensus       223 --~~g~~~~~~~a~l~~r~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~---~~gg~~s~  297 (366)
T PRK07582        223 --LAGAIPGPFEAWLAHRSLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMR---RFGGLVSF  297 (366)
T ss_pred             --HhCCCCCHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCC---CCcceEEE
Confidence              56778889999999999999999999999999999999999986  899999999999999999986   79999999


Q ss_pred             EeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013079          358 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK  437 (450)
Q Consensus       358 ~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~  437 (450)
                      ++++.+.+.+|++.++...    +++|+|+.+|++.++...           ..++++++||+|+| .|+++++|++|.+
T Consensus       298 ~~~~~~~~~~~~~~l~~~~----~~~s~G~~~sl~~~~~~~-----------~~~~~~~liR~svG-lE~~~dli~dl~~  361 (366)
T PRK07582        298 ELADAAAAERFVAASRLVV----AATSFGGVHTSADRRARW-----------GDAVPEGFVRLSCG-IEDTDDLVADLER  361 (366)
T ss_pred             EeCCHHHHHHHHHhCCcce----ecccCCCccchhhhHHHc-----------CCCCCCCeEEEEec-cCCHHHHHHHHHH
Confidence            9998888889999998633    799999999987443211           12367899999999 9999999999999


Q ss_pred             HHHHh
Q 013079          438 ALSRM  442 (450)
Q Consensus       438 al~~~  442 (450)
                      ||+++
T Consensus       362 al~~~  366 (366)
T PRK07582        362 ALDAL  366 (366)
T ss_pred             HHhhC
Confidence            99864

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=4.8e-49  Score=378.06  Aligned_cols=342  Identities=18%  Similarity=0.166  Sum_probs=276.2

Q ss_pred             ccccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh-
Q 013079           62 IEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL-  137 (450)
Q Consensus        62 i~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l-  137 (450)
                      -|+|||++.+++ +.|.+++...||||+|.|.||+.+...++++|++||+++|++  .++||||   |||++|++|+++ 
T Consensus         6 D~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG---~TEsnNlaI~g~~   82 (386)
T COG1104           6 DNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSG---ATESNNLAIKGAA   82 (386)
T ss_pred             cccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecC---CcHHHHHHHHhhH
Confidence            368999999985 999999999999999999999999999999999999999975  5899999   999999999983 


Q ss_pred             -cc----CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 013079          138 -CS----SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN  207 (450)
Q Consensus       138 -~~----~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~  207 (450)
                       ..    .|.|||++..+|+++...++.+ .+ .|++|+|++++     |+++|+++| +++|.+|+|+++||++|++||
T Consensus        83 ~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~-~g~~Vtyl~V~~~G~v~~e~L~~al-~~~T~LVSim~aNnE~G~IQp  159 (386)
T COG1104          83 LAYRNAQKGKHIITSAIEHPAVLNTCRYL-ER-QGFEVTYLPVDSNGLVDLEQLEEAL-RPDTILVSIMHANNETGTIQP  159 (386)
T ss_pred             HhhhcccCCCeEEEcccccHHHHHHHHHH-Hh-cCCeEEEeCCCCCCeEcHHHHHHhc-CCCceEEEEEecccCeeeccc
Confidence             22    4789999999999999999655 44 69999999987     999999999 899999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HHH-HHHHhhhhhhcc
Q 013079          208 IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNS-MMDLHQGALMLL  283 (450)
Q Consensus       208 l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~-l~~~~~~~~~~~  283 (450)
                      +++|+++|+++|++||+|++|  +++..++..+++|+++.|.||++||+|  + |+++.++.. +.+ +.+..+....+.
T Consensus       160 I~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkG--i-GaLyv~~~~~~~p~i~GGgQE~g~Rs  236 (386)
T COG1104         160 IAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKG--I-GALYVRPGVRLEPLIHGGGQERGLRS  236 (386)
T ss_pred             HHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCc--e-EEEEECCCCccCceeccCcCCCCCCC
Confidence            999999999999999999998  888899988899999999999999999  6 777655432 232 333333233345


Q ss_pred             CCCchHHHHHH---HHccCCcHHHHHHHHHHHHHHHHHHHHhC-CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          284 GPTMNPKVAFE---LSERIPHLGLRMKEHCHRALIFARRMKKL-GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       284 g~~~~~~~a~~---~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      |+...+..+.+   +....+.+.....+...++++|.+.|.+. +. .++....++                ..++++|.
T Consensus       237 GTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~r----------------lP~~~~~~  300 (386)
T COG1104         237 GTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPR----------------LPNILNFS  300 (386)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccC----------------CCCeEEEE
Confidence            54443333322   11244556777788889999999999876 43 333222222                34499999


Q ss_pred             eCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCC----CeEEEEeCCCCCHHHHHHH
Q 013079          359 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       359 l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~----~~iRiS~g~~~~~~~~i~~  434 (450)
                      |++.+ ++.++..|+..+    |++|+|++||.....+        ++++.+||+++    +.|||||| ..+++++++.
T Consensus       301 f~gv~-gE~ll~~L~~~g----I~vStGSACsS~~~~p--------ShVL~AmG~~~e~a~~siR~S~g-~~tt~eei~~  366 (386)
T COG1104         301 FPGVE-GESLLLALDLAG----IAVSTGSACSSGSLEP--------SHVLRAMGISEELAHGSIRFSLG-RFTTEEEIDA  366 (386)
T ss_pred             eCCCc-HHHHHHhccccC----eEEeccccccCCCCCc--------cHHHHHcCCChHHhCccEEEEcC-CCCCHHHHHH
Confidence            99876 788898998655    8999999988765444        35677777763    67999999 9898888888


Q ss_pred             HHHHHHHh
Q 013079          435 FEKALSRM  442 (450)
Q Consensus       435 l~~al~~~  442 (450)
                      +.+++.++
T Consensus       367 ~~~~l~~~  374 (386)
T COG1104         367 AAEALKEI  374 (386)
T ss_pred             HHHHHHHH
Confidence            87777654

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-34  Score=276.72  Aligned_cols=340  Identities=18%  Similarity=0.182  Sum_probs=240.8

Q ss_pred             cccCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhcc
Q 013079           63 EASATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCS  139 (450)
Q Consensus        63 ~~att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~  139 (450)
                      ++||++..+. +++|.+++...++||.+. .|+......+++.|+.+|+++|++  .++||+|   +||+++++++++..
T Consensus        49 ~~at~p~~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~---ATEs~Nlvl~~v~~  124 (428)
T KOG1549|consen   49 NQATGPMDPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEAAREQVAKLINADPSDIVFTSG---ATESNNLVLKGVAR  124 (428)
T ss_pred             cCcCCCCCHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCC---chHHHHHHHHHhhc
Confidence            3566666665 499999999999999987 788888888999999999999985  4899999   99999999998743


Q ss_pred             -CCC----EEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHH
Q 013079          140 -SGG----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP  209 (450)
Q Consensus       140 -~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~  209 (450)
                       .+|    +||+.+.+|+++...+..+..  .|++++++++.     |.+.++++| +++|++|.|+++||.+|.++|++
T Consensus       125 ~~~~~~~k~iitl~~eH~~v~~s~~~l~~--~g~~Vt~lpv~~~~~~d~~~~~~~i-~~~T~lv~I~~Vnn~~gv~~Pv~  201 (428)
T KOG1549|consen  125 FFGDKTKKHIITLQTEHPCVLDSCRALQE--EGLEVTYLPVEDSGLVDISKLREAI-RSKTRLVSIMHVNNEIGVLQPVK  201 (428)
T ss_pred             cccccccceEEEecccCcchhHHHHHHHh--cCeEEEEeccCccccccHHHHHHhc-CCCceEEEEEecccCccccccHH
Confidence             455    999999999999998865544  58999999876     889999999 89999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH---HHH--HHHHHHhhhhhhc
Q 013079          210 ELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA---NLV--NSMMDLHQGALML  282 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~---~~~--~~l~~~~~~~~~~  282 (450)
                      +|.++|+++|+.+|+|++|  +....++.++++|+++.|+||+||++|  + |+++.++   .+.  ..+.+..+.....
T Consensus       202 EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~--i-GaLYvr~~~~~~~~~p~~~GGgq~r~~r  278 (428)
T KOG1549|consen  202 EIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPG--I-GALYVRRKRPRLRVEPPLSGGGQERGLR  278 (428)
T ss_pred             HHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCc--c-eEEEEccCCCcccccCcccCCccccccc
Confidence            9999999999999999998  888899999999999999999999999  6 8887764   111  1111111100112


Q ss_pred             cCCCchHH-----HHHHHH-ccCCcHHHHHHHHHHHHHHHHHHHHh-CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          283 LGPTMNPK-----VAFELS-ERIPHLGLRMKEHCHRALIFARRMKK-LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       283 ~g~~~~~~-----~a~~~~-~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .|....+.     .|.... +........+   .+....+...+.. .+. ....++-                ..+.++
T Consensus       279 sGT~~~~~~~~~gsA~e~~~~~~~~~~~~~---~~~~~~ll~~i~~~~~~~~~~G~~~----------------~~~~~~  339 (428)
T KOG1549|consen  279 SGTVATPLAVGLGSAAEFVNKEMAYDEAII---KRLSEKLLMGIGQSLPEVTLNGSGK----------------SRYPGL  339 (428)
T ss_pred             cCCcCchhhhhhHHHHHHHHhhcchhHHHH---HHHHHHHHHHHhhhCchhhccCCcc----------------cccccc
Confidence            22221111     111111 1111122222   2233344444322 221 2222221                125568


Q ss_pred             EEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          355 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       355 ~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      ++|.++-.+ ...++..++.      +..+.|.+|+.-..+++......+.+.    ..-...||||+| +.+++++++.
T Consensus       340 ~~~~~~~~~-g~~~~~~~~~------~~l~s~~a~~~~~~epsy~l~~~G~~~----~~~~~~iRis~G-~y~t~~di~~  407 (428)
T KOG1549|consen  340 VSLSFPYVE-GESLLMDLKD------VALSSGSACTSASLEPSYVLRAIGVDE----DLAHSSIRISIG-RYTTEEDIDY  407 (428)
T ss_pred             eeeeccccc-Ccchhhhhhh------hhhcccchhhcCCCCcchhhhhcCcch----hhhcceeEEeee-eeCcHHHHHH
Confidence            888887322 3445566665      788999888765433333222222111    112577999999 9999999999


Q ss_pred             HHHHHHHhh
Q 013079          435 FEKALSRMQ  443 (450)
Q Consensus       435 l~~al~~~~  443 (450)
                      +.+++.+..
T Consensus       408 ~~~~i~~~v  416 (428)
T KOG1549|consen  408 LVDAIKKLV  416 (428)
T ss_pred             HHHHHHHHH
Confidence            998887754

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-32  Score=270.91  Aligned_cols=336  Identities=17%  Similarity=0.188  Sum_probs=254.5

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCC-CCccccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHh-
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQL-  137 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~-~~~~y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l-  137 (450)
                      .+++..... ++++.++++...+|+. +.|..+.......+++|+.+|+++|++   .++||+|   .|+|++++..++ 
T Consensus        29 aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~---tT~aln~va~~l~  105 (405)
T COG0520          29 AATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRG---TTEALNLVARGLG  105 (405)
T ss_pred             cccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCC---hhHHHHHHHHHhh
Confidence            445552223 5888888887778876 467777777778999999999999976   3899999   999999999988 


Q ss_pred             --ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH
Q 013079          138 --CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE  210 (450)
Q Consensus       138 --~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~  210 (450)
                        .++||+||++..+|++....|.....+ .|.++++++.+     ++++++..+ +++|++|.+.+++|.||.+.|+++
T Consensus       106 ~~~~~gdeIv~s~~EH~sn~~pw~~~~~~-~Ga~v~~i~~~~~g~~~~~~~~~~i-~~~Tklvais~vSn~tG~~~pv~~  183 (405)
T COG0520         106 RSLKPGDEIVVSDLEHHSNIVPWQELAKR-TGAKVRVIPLDDDGLLDLDALEKLI-TPKTKLVALSHVSNVTGTVNPVKE  183 (405)
T ss_pred             hhhcCCCEEEEccCcchhhHHHHHHHHHh-cCcEEEEEecCCCCCcCHHHHHHhc-CCCceEEEEECccccccccchHHH
Confidence              688999999999999999999766665 79999999864     688999988 899999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCC-ccccCccceEEEEEcCHHHHHHHHHHhhh---------
Q 013079          211 LSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISK-FISGGADIIAGAVCGPANLVNSMMDLHQG---------  278 (450)
Q Consensus       211 I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK-~~g~~g~~igG~l~~~~~~~~~l~~~~~~---------  278 (450)
                      |+++||++|+++++|.+|  +++..++.++|+|++.+|.|| .+||.|  + |++++++++.+.+.....+         
T Consensus       184 I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~G--i-GvLy~r~~~l~~l~P~~~gg~~~~~~~~  260 (405)
T COG0520         184 IAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTG--I-GVLYVRKELLEELEPFLGGGGMIEYVSR  260 (405)
T ss_pred             HHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCc--e-EEEEEchHHHhhcCCcccCCCceeeecc
Confidence            999999999999999998  777888889999999999999 555546  5 9999999988876221110         


Q ss_pred             ---------hhhccCCCchHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHH
Q 013079          279 ---------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKS  343 (450)
Q Consensus       279 ---------~~~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~  343 (450)
                               ....-.+++....+..+...++.     +....++.+++.+++.+.|++++. ++..|..           
T Consensus       261 ~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~-----------  329 (405)
T COG0520         261 DEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPD-----------  329 (405)
T ss_pred             cccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc-----------
Confidence                     11122333333332222222222     223344457888889999998875 7766652           


Q ss_pred             HhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079          344 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG  423 (450)
Q Consensus       344 ~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g  423 (450)
                           ...+++++|.+++.. ...+...|...   | |++..|..|....              .+..++ .+.+|+|++
T Consensus       330 -----~~r~~~vsF~v~~~~-~~dv~~~L~~~---g-I~vr~g~~ca~p~--------------~~~~~~-~~~iR~S~~  384 (405)
T COG0520         330 -----ADRGGIVSFNVKGIH-PHDVATLLDEK---G-IAVRAGHHCAQPL--------------HRLLGV-DATIRASLH  384 (405)
T ss_pred             -----ccCceEEEEEeCCCC-HHHHHHHHHhC---C-eEEEeccccccHH--------------HHhcCC-CCceEEEEe
Confidence                 025779999999653 45555566543   3 7888887764321              112333 345999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh
Q 013079          424 YLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       424 ~~~~~~~~i~~l~~al~~~~~  444 (450)
                       ..+++++|+.|.++|+++.+
T Consensus       385 -~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         385 -LYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             -ecCCHHHHHHHHHHHHHHhh
Confidence             99999999999999998754

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=100.00  E-value=4.3e-32  Score=274.56  Aligned_cols=335  Identities=16%  Similarity=0.180  Sum_probs=240.1

Q ss_pred             cccCccccCC-HHHHHHhhcCCCCCCC-CCccccCCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh
Q 013079           63 EASATFTVME-PETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        63 ~~att~~~~~-~~~~~~~~~~~~~n~~-~~~~y~r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l  137 (450)
                      ++++++..+. .+++.++++..++|+. +.|..+.......+++|+.||+++|+   +.++||+|   +|+++++++.++
T Consensus        29 ~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g---~t~~l~~~~~~~  105 (406)
T PRK09295         29 SAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRG---TTEGINLVANSW  105 (406)
T ss_pred             CcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCC---HHHHHHHHHHHh
Confidence            3455565445 4888888887777874 45655666667789999999999986   36899999   999999998763


Q ss_pred             ----ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCH
Q 013079          138 ----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANI  208 (450)
Q Consensus       138 ----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l  208 (450)
                          +++||+|++++++|++....+.....+ .|+++.+++.+     |+++|++++ +++|++|++++++||||.++|+
T Consensus       106 ~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~l~~~~n~tG~~~~~  183 (406)
T PRK09295        106 GNSNVRAGDNIIISEMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPALF-DERTRLLAITHVSNVLGTENPL  183 (406)
T ss_pred             hhhcCCCcCEEEECcchhhHHHHHHHHHHHH-cCcEEEEEecCCCCCCCHHHHHHhc-CCCcEEEEEecchhcccccCCH
Confidence                578999999999999876655444333 68888888653     789999999 8899999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh-------
Q 013079          209 PELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-------  279 (450)
Q Consensus       209 ~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------  279 (450)
                      ++|.++|+++|+++++|++|  +....+...+++|+++.|+||.+|++|  + |+++.++++++.+.....+.       
T Consensus       184 ~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~g~~~~~~~~  260 (406)
T PRK09295        184 AEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWEGGGSMIATVS  260 (406)
T ss_pred             HHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCC--c-EEEEEchHhHhhCCCcccCCceeeeee
Confidence            99999999999999999998  434445556689999999999999877  5 89988887765542111100       


Q ss_pred             -----------hhccCCCchHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHH
Q 013079          280 -----------LMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLK  342 (450)
Q Consensus       280 -----------~~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~  342 (450)
                                 .....++++......+...++.     +....++..++++++.+.|++++ .++..|.           
T Consensus       261 ~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~-----------  329 (406)
T PRK09295        261 LTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-----------  329 (406)
T ss_pred             cCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-----------
Confidence                       0011223332222222222222     23344556778888888888774 3555442           


Q ss_pred             HHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 013079          343 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV  422 (450)
Q Consensus       343 ~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~  422 (450)
                             ..+++++|.+++.. ...+...|..   +| |.++.|+.|+..              ....++. ++.||+|+
T Consensus       330 -------~~~~iv~~~~~~~~-~~~~~~~L~~---~g-I~v~~g~~c~~~--------------~~~~~~~-~~~iRiS~  382 (406)
T PRK09295        330 -------NRLGVIAFNLGKHH-AYDVGSFLDN---YG-IAVRTGHHCAMP--------------LMAYYNV-PAMCRASL  382 (406)
T ss_pred             -------CCceEEEEEECCcC-HHHHHHHHHh---CC-eEEeccccchHH--------------HHHHHCC-CCEEEEEc
Confidence                   12468999988532 3455556654   33 788888776531              1122343 36899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHhhh
Q 013079          423 GYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       423 g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      + ..+++++++.|.++|+++.+
T Consensus       383 ~-~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        383 A-MYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             c-CCCCHHHHHHHHHHHHHHHH
Confidence            9 99999999999999988754

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-31  Score=265.56  Aligned_cols=276  Identities=22%  Similarity=0.250  Sum_probs=208.7

Q ss_pred             ChhHHHHHHHHHHHh----C----CCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079           98 NPTVLNLSRQMAALE----G----TEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~----g----~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      .....+||+.||+.+    |    ++. +++|+|   +++|+..++.+++.+||+|++++|.|+.+...+.     +.|.
T Consensus        64 ~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~G---a~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~-----~~gg  135 (393)
T COG0436          64 SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAG---AKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVK-----LAGG  135 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCC---HHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHH-----hcCC
Confidence            334556666666654    3    234 899999   9999999999999999999999999999998875     4677


Q ss_pred             eEEEeCC-----C---CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc--
Q 013079          169 TTTFVDI-----S---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--  235 (450)
Q Consensus       169 ~v~~v~~-----~---d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--  235 (450)
                      ++.+++.     +   |+++|++++ +++||+|++++||||||.+.+   +++|+++|++||+++|+|++|..+.++.  
T Consensus       136 ~~v~v~l~~~~~~f~~d~~~l~~~i-~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~  214 (393)
T COG0436         136 KPVPVPLDEEENGFKPDLEDLEAAI-TPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAE  214 (393)
T ss_pred             EEEEEeCCcCccCCcCCHHHHHhhc-CccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCC
Confidence            7777763     1   799999999 789999999999999999975   7899999999999999999997766543  


Q ss_pred             ----cCC----CCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC---cHH
Q 013079          236 ----ARL----GADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLG  303 (450)
Q Consensus       236 ----~~~----g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~  303 (450)
                          .++    ...+++.|+||.++++|+|+ ||++++ +++++.+...++ ....+.+++.|.++..++...+   .+.
T Consensus       215 ~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRv-G~~v~~~~~l~~~~~~~~~-~~~~~~~~~~Q~aa~~aL~~~~~~~~~~  292 (393)
T COG0436         215 HPSILELAGARDRTITINSFSKTYGMTGWRI-GWVVGPPEELIAALRKLKS-YLTSCAPTPAQYAAIAALNGPQSDEVVE  292 (393)
T ss_pred             cCCHhhcCCCcceEEEEecccccccccccce-eEeecChHHHHHHHHHHHH-hcccCCCHHHHHHHHHHhcCccchHHHH
Confidence                111    24689999999999999999 999998 788888876655 3334567777878877777553   334


Q ss_pred             HHHHHHHHHHHHHHHHHHhCC-CeeeC-CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013079          304 LRMKEHCHRALIFARRMKKLG-LKVLY-PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM  381 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~-~~v~~-p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i  381 (450)
                      ...+.+.++++.+.+.|.+.+ +.+.. |.                   .+..++..++...+...|...|-.  ..| +
T Consensus       293 ~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~-------------------Ga~Y~~~~i~~~~d~~~f~~~Ll~--~~g-V  350 (393)
T COG0436         293 EMREEYRERRDLLVEALNEIGGLSVVKPPE-------------------GAFYLFPKIPELLDSEEFAKKLLE--EAG-V  350 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeeeccCCC-------------------eeEEEEeecCCCCCHHHHHHHHHH--hCC-E
Confidence            444678999999999999886 55554 32                   456778888743345667666643  233 5


Q ss_pred             ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013079          382 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT  427 (450)
Q Consensus       382 ~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~  427 (450)
                      ++..|+....                    ...+++||||++ ..+
T Consensus       351 ~v~PG~~Fg~--------------------~~g~~~vRis~~-~~~  375 (393)
T COG0436         351 AVVPGSGFGE--------------------PPGEGYVRLSLA-TSE  375 (393)
T ss_pred             EEecccccCC--------------------CCCCCeEEEEEe-cCH
Confidence            6666643211                    013689999999 543

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=100.00  E-value=8.6e-32  Score=270.29  Aligned_cols=342  Identities=14%  Similarity=0.123  Sum_probs=241.4

Q ss_pred             cccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc
Q 013079           63 EASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC  138 (450)
Q Consensus        63 ~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~  138 (450)
                      +++||+..+.+ +.+.+++...++||.+.|.|+....+.+++.++++++.+++   +.++||+|   +++++++++.++.
T Consensus         5 ~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g---~teal~~~~~~~~   81 (382)
T TIGR03403         5 NNATTMLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSC---ATESNNWVLKGVY   81 (382)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCC---HHHHHHHHHHHHH
Confidence            46777776664 88888888889999988888877677777777888877764   57899999   9999999998752


Q ss_pred             -----cC-CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 013079          139 -----SS-GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN  207 (450)
Q Consensus       139 -----~~-gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~  207 (450)
                           ++ +++|+++..+|+++...+. .+.. .|.++.+++.+     |++++++++ ++++++|++++++||||.+.|
T Consensus        82 ~~~~~~~~~~~vi~~~~e~ps~~~~~~-~~~~-~G~~v~~v~~~~~g~~d~~~l~~~i-~~~t~lv~~~~~~n~tG~~~~  158 (382)
T TIGR03403        82 FDEILKGGKNHIITTEVEHPAVRATCA-FLES-LGVEVTYLPINEQGTITAEQVREAI-TEKTALVSVMWANNETGMIFP  158 (382)
T ss_pred             HhhcccCCCCEEEEcCCccHHHHHHHH-HHHH-CCCEEEEEecCCCCCCCHHHHHHhc-ccCCeEEEEEcccCCCccccC
Confidence                 45 4689999999999887764 3333 68899888764     789999999 788999999999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HHHHH-HHhhhhhhcc
Q 013079          208 IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMM-DLHQGALMLL  283 (450)
Q Consensus       208 l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~-~~~~~~~~~~  283 (450)
                      +++|.++|+++|+++|+|+++  +....+..+.++|+++.|+||++|++|  + |+++.++.. +.+.. ..........
T Consensus       159 ~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-g~l~vr~~~~~~p~~~g~~~~~~~~~  235 (382)
T TIGR03403       159 IKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKG--V-GGLYIRKGVELTPLFHGGEHMGGRRS  235 (382)
T ss_pred             HHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCc--e-EEEEECCCCCCCCcccCCCCCCCccc
Confidence            999999999999999999998  445556667789999999999999888  5 666544332 11111 0000000012


Q ss_pred             CC--CchHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          284 GP--TMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       284 g~--~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                      |.  .+...++..+++.. +.++...++..++++++.+.|++++. .+..|.-.                ..++++.|.+
T Consensus       236 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~  299 (382)
T TIGR03403       236 GTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREH----------------RVPNTILISI  299 (382)
T ss_pred             CCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCC----------------CcCCEEEEEe
Confidence            21  11221222222211 22444456678888899999987654 55443211                1234778888


Q ss_pred             CCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHH
Q 013079          360 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       360 ~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      ++.+ ...++..|...   | |.++.|+.|+.....        +...+.++|.+    .+.||+|++ ..+++++++.|
T Consensus       300 ~~~~-~~~~~~~L~~~---g-I~v~~g~~c~~~~~~--------~~~v~~~~g~~~~~~~~~iR~s~~-~~~t~~did~~  365 (382)
T TIGR03403       300 KGVE-GEAMLWDLNKA---G-IAASTGSACASEDLE--------ANPVMVAIGADKELAHTAIRLSLS-RFTTEEEIDYT  365 (382)
T ss_pred             CCCC-HHHHHHhhccC---C-EEEEchhccCCCCCC--------cCHHHHHcCCChHHhCeeEEEECC-CCCCHHHHHHH
Confidence            7543 45566666643   3 899999887643221        12445556654    378999999 98999999999


Q ss_pred             HHHHHHhh
Q 013079          436 EKALSRMQ  443 (450)
Q Consensus       436 ~~al~~~~  443 (450)
                      .++|+++.
T Consensus       366 ~~~l~~~~  373 (382)
T TIGR03403       366 IEVFKKAV  373 (382)
T ss_pred             HHHHHHHH
Confidence            88887654

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK02948 cysteine desulfurase; Provisional

Probab=100.00  E-value=9.4e-32  Score=269.94  Aligned_cols=343  Identities=15%  Similarity=0.128  Sum_probs=244.0

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc--
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC--  138 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~--  138 (450)
                      ++++++.+. .+++.++++..++||++.|..++......+++|+.+|+++|+  +.+++|+|   +++++++++.+++  
T Consensus         7 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g---~t~a~~~~~~~~~~~   83 (381)
T PRK02948          7 AATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSG---GTESNYLAIQSLLNA   83 (381)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCc---HHHHHHHHHHHHHHh
Confidence            456665555 488888888888999888877777677899999999999985  46899999   9999999988775  


Q ss_pred             --cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHH
Q 013079          139 --SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL  211 (450)
Q Consensus       139 --~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I  211 (450)
                        ++|++|+++..+|+++...+. .... .|.++..++.+     |++++++++ ++++++|++++++||||.+.|+++|
T Consensus        84 ~~~~g~~vv~~~~~h~s~~~~~~-~~~~-~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~~~~~~n~tG~~~~~~~I  160 (381)
T PRK02948         84 LPQNKKHIITTPMEHASIHSYFQ-SLES-QGYTVTEIPVDKSGLIRLVDLERAI-TPDTVLASIQHANSEIGTIQPIAEI  160 (381)
T ss_pred             ccCCCCEEEECCcccHHHHHHHH-HHHh-CCCEEEEEeeCCCCCCCHHHHHHhc-CCCCEEEEEECCcCCcEeehhHHHH
Confidence              468999999999998877763 2233 68888877653     789999998 7889999999999999999999999


Q ss_pred             HHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HHHHHHHh--h-hhhhccCC
Q 013079          212 SRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLH--Q-GALMLLGP  285 (450)
Q Consensus       212 ~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~--~-~~~~~~g~  285 (450)
                      .++|+++|+++|+|+++  +....+..++++|+++.|+||++|++|  + |+++.++++ +..+....  . .....+.+
T Consensus       161 ~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~  237 (381)
T PRK02948        161 GALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKG--V-GAVYINPQVRWKPVFPGTTHEKGFRPGTVN  237 (381)
T ss_pred             HHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCc--E-EEEEEcCCCCCCCcccCCCCCCCcCCCCcc
Confidence            99999999999999886  445556666789999999999999888  5 777666543 11111000  0 00001112


Q ss_pred             CchHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH
Q 013079          286 TMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK  364 (450)
Q Consensus       286 ~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~  364 (450)
                      .+...++..++... +.+.+..++..++++++.+.|++++.++...+..   ..           ....+++|.+++.. 
T Consensus       238 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~---~~-----------~~~~i~~~~~~~~~-  302 (381)
T PRK02948        238 VPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHS---TS-----------CLPHIIGVTIKGIE-  302 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCC---cc-----------CcCCEEEEEeCCCC-
Confidence            22222332333222 4455666778889999999999887644322101   00           12347888887533 


Q ss_pred             HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          365 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       365 ~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      ...+...|..   .| |.++.|+.|+.....++        ....++|.+    .+.||||+| ..+++++++.|.++|.
T Consensus       303 ~~~~~~~l~~---~g-I~v~~g~~c~~~~~~p~--------~~~~~~~~~~~~~~~~lRis~~-~~~t~~di~~l~~~l~  369 (381)
T PRK02948        303 GQYTMLECNR---RG-IAISTGSACQVGKQEPS--------KTMLAIGKTYEEAKQFVRFSFG-QQTTKDQIDTTIHALE  369 (381)
T ss_pred             HHHHHHhccc---CC-EEEEchHhcCCCCCCCC--------HHHHHcCCChHHhCceEEEEcC-CCCCHHHHHHHHHHHH
Confidence            4556666654   34 78898988765333222        233334431    478999999 9999999999999988


Q ss_pred             Hhh
Q 013079          441 RMQ  443 (450)
Q Consensus       441 ~~~  443 (450)
                      ++.
T Consensus       370 ~~~  372 (381)
T PRK02948        370 TIG  372 (381)
T ss_pred             HHH
Confidence            764

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=4.8e-31  Score=266.60  Aligned_cols=333  Identities=17%  Similarity=0.189  Sum_probs=235.8

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCC-CCccccCCCChhHHHHHHHHHHHhCC-C--eEEEecChHHHHHHHHHHHHHh-
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT-E--AAYCTASDKAGMSAISSVLMQL-  137 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~-~~~~y~r~~~~~~~~l~~~iA~l~g~-~--~~~~tsg~~~gt~ai~~al~~l-  137 (450)
                      +++++..+. .+++.++++..++|+. +.|..++......+++|+.+|+++|+ +  .++||+|   +|+++++++.++ 
T Consensus        26 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~---~t~~i~~~~~~~~  102 (401)
T PRK10874         26 AATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRG---TTESINLVAQSYA  102 (401)
T ss_pred             CcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC---HHHHHHHHHHHhh
Confidence            344444334 4888888887777864 35656666667789999999999997 3  4899999   999999999887 


Q ss_pred             ---ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHH
Q 013079          138 ---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP  209 (450)
Q Consensus       138 ---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~  209 (450)
                         +++||+|++++++|++....+.....+ .|+++++++.+     |++++++++ +++|++|++++++||||.+.|++
T Consensus       103 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~i~~~~n~tG~~~~~~  180 (401)
T PRK10874        103 RPRLQPGDEIIVSEAEHHANLVPWLMVAQQ-TGAKVVKLPLGADRLPDVDLLPELI-TPRTRILALGQMSNVTGGCPDLA  180 (401)
T ss_pred             hccCCCcCEEEECCcchHHHHHHHHHHHHH-hCCEEEEEecCCCCcCCHHHHHHhc-CcCcEEEEEeCCcccccCcCCHH
Confidence               378999999999999865555443333 68888887753     789999999 88999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh--------
Q 013079          210 ELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA--------  279 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~--------  279 (450)
                      +|+++|+++|+++|+|++|  +.+..+...+++|+++.|+||.+|++|  + |+++.++++++.+.....+.        
T Consensus       181 ~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~  257 (401)
T PRK10874        181 RAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTG--I-GVLYGKSELLEAMSPWQGGGKMLTEVSF  257 (401)
T ss_pred             HHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCc--c-EEEEEchHHHhcCCCeecCCcceEeecc
Confidence            9999999999999999999  455556556689999999999999887  5 99988888877653221100        


Q ss_pred             ---------hhccCCCchH---HHHHHHHccCC--cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHH
Q 013079          280 ---------LMLLGPTMNP---KVAFELSERIP--HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSM  344 (450)
Q Consensus       280 ---------~~~~g~~~~~---~~a~~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~  344 (450)
                               .....++++.   .+...++..+.  ......++..++++++.+.|++++ ..+..+.             
T Consensus       258 ~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~-------------  324 (401)
T PRK10874        258 DGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ-------------  324 (401)
T ss_pred             CccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-------------
Confidence                     0011112221   11222221111  122233445667888888888763 3443321             


Q ss_pred             hccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC
Q 013079          345 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY  424 (450)
Q Consensus       345 ~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~  424 (450)
                            .+++++|.+++.. ...+.+.|...   | |.++.|..|+.              .....+|. .+.||||++ 
T Consensus       325 ------~~~i~~~~~~~~~-~~~~~~~L~~~---g-I~v~~g~~~~~--------------~~~~~~g~-~~~iRiS~~-  377 (401)
T PRK10874        325 ------DSSLLAFDFAGVH-HSDLVTLLAEY---G-IALRAGQHCAQ--------------PLLAALGV-TGTLRASFA-  377 (401)
T ss_pred             ------CCcEEEEEECCcC-HHHHHHHHHHC---C-cEEeccccchH--------------HHHHHhCC-CCEEEEEec-
Confidence                  2348888887533 35566666543   3 67787766531              11222343 378999999 


Q ss_pred             CCCHHHHHHHHHHHHHHhhh
Q 013079          425 LGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       425 ~~~~~~~i~~l~~al~~~~~  444 (450)
                      ..+++++++.|.++|+++.+
T Consensus       378 ~~nt~edid~ll~al~~~~~  397 (401)
T PRK10874        378 PYNTQSDVDALVNAVDRALE  397 (401)
T ss_pred             ccCCHHHHHHHHHHHHHHHH
Confidence            98899999999999887643

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=7.7e-31  Score=264.81  Aligned_cols=333  Identities=17%  Similarity=0.136  Sum_probs=233.6

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCC-CCccccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHh-
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQL-  137 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~-~~~~y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l-  137 (450)
                      +++++..+. .+++.++++...+||. +.|..++......+++|+.+|+++|++   .+++|+|   +|+++++++.++ 
T Consensus        23 a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g---~t~~l~~~~~~~~   99 (398)
T TIGR03392        23 AATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRG---TTESINLVAQSYA   99 (398)
T ss_pred             ccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCC---hHHHHHHHHHHhh
Confidence            344444444 4777787776667774 345455445567889999999999963   5899999   999999999887 


Q ss_pred             ---ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHH
Q 013079          138 ---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP  209 (450)
Q Consensus       138 ---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~  209 (450)
                         +++||+|++++++|++....+.....+ .|+++++++.+     |++++++++ +++|++|++++++||||.+.|++
T Consensus       100 ~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~~~~l~~~i-~~~t~lv~i~~~~n~tG~~~~~~  177 (398)
T TIGR03392       100 RPRLQPGDEIIVSEAEHHANLIPWLMVAQQ-TGAKVVKLPIGADLLPDIRQLPELL-TPRTRILALGQMSNVTGGCPDLA  177 (398)
T ss_pred             hccCCCCCEEEECCcchhHHHHHHHHHHHH-cCcEEEEEecCCCCCcCHHHHHHHh-ccCceEEEEECccccccccCCHH
Confidence               478999999999998865444333333 68888888754     789999999 88999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh--------
Q 013079          210 ELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA--------  279 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~--------  279 (450)
                      +|+++|+++|+++++|++|  +.+..+...+++|+++.|+||.+|++|  + |+++.++++++.+.....+.        
T Consensus       178 ~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~  254 (398)
T TIGR03392       178 RAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTG--I-GVLYGKTELLEAMPPWQGGGKMLSHVSF  254 (398)
T ss_pred             HHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCc--e-EEEEEcHHHHhhCCCeecCCceEeeccc
Confidence            9999999999999999999  444445555689999999999999877  5 99998888776653221100        


Q ss_pred             ---------hhccCCCchH---HHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHH
Q 013079          280 ---------LMLLGPTMNP---KVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSM  344 (450)
Q Consensus       280 ---------~~~~g~~~~~---~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~  344 (450)
                               .....+++..   ..+..++..+  ..+....++..++++++.+.|++++ .++..+.             
T Consensus       255 ~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~-------------  321 (398)
T TIGR03392       255 DGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP-------------  321 (398)
T ss_pred             cccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-------------
Confidence                     0011122222   1111222111  1223334455777888888888764 3433221             


Q ss_pred             hccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC
Q 013079          345 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY  424 (450)
Q Consensus       345 ~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~  424 (450)
                            .+++++|.+++.. .+.+.+.|...   | |.++.|+.|+.              .....+|. ++.||||++ 
T Consensus       322 ------~~~i~~~~~~~~~-~~~l~~~L~~~---g-I~v~~g~~~~~--------------~~~~~~g~-~~~iRvS~~-  374 (398)
T TIGR03392       322 ------GSSLLAFDFAGVH-HSDLAALLAES---G-IALRAGQHCAQ--------------PLMAALGV-SGTLRASFA-  374 (398)
T ss_pred             ------CCcEEEEEeCCcC-HHHHHHHHHhC---C-EEEecCccchH--------------HHHHHhCC-CCEEEEEee-
Confidence                  2348988887543 45666677643   3 78888876642              11122343 378999999 


Q ss_pred             CCCHHHHHHHHHHHHHHhhh
Q 013079          425 LGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       425 ~~~~~~~i~~l~~al~~~~~  444 (450)
                      ..+++++++.|.++|+++.+
T Consensus       375 ~~~t~~ei~~l~~~l~~~~~  394 (398)
T TIGR03392       375 PYNTQQDVDALVDAVGAALE  394 (398)
T ss_pred             ccCCHHHHHHHHHHHHHHHH
Confidence            88999999999999887644

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02651 cysteine desulfurase

Probab=99.98  E-value=3.2e-31  Score=264.40  Aligned_cols=331  Identities=19%  Similarity=0.185  Sum_probs=235.1

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh--
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL--  137 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l--  137 (450)
                      ++++++.+. .+++.+++...++||.+ .|.+++.....++++++.+++++|++  .++||+|   +|+++++++.++  
T Consensus         6 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~---~t~a~~~~l~~~~~   82 (364)
T PLN02651          6 QATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSG---ATESNNLAIKGVMH   82 (364)
T ss_pred             cCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCC---HHHHHHHHHHHHHH
Confidence            455555455 48888888777889876 67777666778999999999999975  6899999   999999888665  


Q ss_pred             --ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH
Q 013079          138 --CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE  210 (450)
Q Consensus       138 --~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~  210 (450)
                        .++||+|+++..+|+++...+... .+ .|+++++++.+     |++++++++ ++++++|++++++|+||.+.|+++
T Consensus        83 ~~~~~g~~vl~~~~~h~s~~~~~~~~-~~-~g~~v~~v~~~~~~~~d~~~l~~~i-~~~t~lv~v~~~~n~tG~~~~l~~  159 (364)
T PLN02651         83 FYKDKKKHVITTQTEHKCVLDSCRHL-QQ-EGFEVTYLPVKSDGLVDLDELAAAI-RPDTALVSVMAVNNEIGVIQPVEE  159 (364)
T ss_pred             hccCCCCEEEEcccccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhc-CCCcEEEEEECCCCCceecccHHH
Confidence              367899999999999987776433 23 68888888753     799999999 889999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh---hccCC
Q 013079          211 LSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL---MLLGP  285 (450)
Q Consensus       211 I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~---~~~g~  285 (450)
                      |.++|+++|+++++|++|  +.+.+++.++++|+++.|.||++|++|  + |+++.+++....+.....+..   ....+
T Consensus       160 I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G--~-g~l~v~~~~~~~l~p~~~g~~~~~~~~~G  236 (364)
T PLN02651        160 IGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKG--V-GALYVRRRPRVRLEPLMSGGGQERGRRSG  236 (364)
T ss_pred             HHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCc--e-EEEEEcCCCCCCCCccccCCCccCCccCC
Confidence            999999999999999998  556677788899999999999987777  4 777666544333221111000   01122


Q ss_pred             CchHHHHHHHHccCC----cHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          286 TMNPKVAFELSERIP----HLGLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       286 ~~~~~~a~~~~~~~~----~l~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                      +++......+...++    ..+...++..++++++.+.|++ . +.++..|.-+..              ...++++|.+
T Consensus       237 T~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~--------------~~~~i~~~~~  302 (364)
T PLN02651        237 TENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEK--------------RYPGTLNLSF  302 (364)
T ss_pred             CccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCccc--------------CcCCEEEEEe
Confidence            322222222111222    2333345567788888888875 3 446665531110              1345999999


Q ss_pred             CCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHH
Q 013079          360 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       360 ~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~  433 (450)
                      ++.+ .+.+...|..      |+++.|+.|+......+        ...+.+|..    .+.||+|++ ..+++++|+
T Consensus       303 ~~~~-~~~~~~~L~~------i~v~~g~~c~~~~~~~~--------~~~~~~g~~~~~~~~~vR~S~~-~~~t~~did  364 (364)
T PLN02651        303 AYVE-GESLLMGLKE------VAVSSGSACTSASLEPS--------YVLRALGVPEEMAHGSLRLGVG-RFTTEEEVD  364 (364)
T ss_pred             CCCC-HHHHHHHhCC------EEEEchhhcCCCCCCcC--------HHHHHcCCChHHhCceEEEEcC-CCCCHHHcC
Confidence            8543 5567777764      78999988876433333        334455554    378999999 888887764

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.98  E-value=1.4e-30  Score=261.35  Aligned_cols=341  Identities=17%  Similarity=0.152  Sum_probs=238.1

Q ss_pred             cccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc-
Q 013079           63 EASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC-  138 (450)
Q Consensus        63 ~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~-  138 (450)
                      +++++++.+++ +++.+++...++||.+.|.++......++++|+.+++++|++  .++||+|   +|+++++++.+++ 
T Consensus         5 ~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~---~t~a~~~al~~~~~   81 (379)
T TIGR03402         5 NNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSG---GTESDNTAIKSALA   81 (379)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCc---HHHHHHHHHHHHHH
Confidence            34566665554 888888877788988766666556677899999999999975  5899999   9999999998764 


Q ss_pred             --cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHH
Q 013079          139 --SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL  211 (450)
Q Consensus       139 --~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I  211 (450)
                        .+|++|+++..+|+++...+... .+ .|+++.+++.+     |++++++++ ++++++|++++++||||.+.|+++|
T Consensus        82 ~~~~~~~vv~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~g~~~~~~l~~~i-~~~~~lv~i~~~~n~tG~~~~~~~I  158 (379)
T TIGR03402        82 AQPEKRHIITTAVEHPAVLSLCQHL-EK-QGYKVTYLPVDEEGRLDLEELRAAI-TDDTALVSVMWANNETGTIFPIEEI  158 (379)
T ss_pred             hcCCCCeEEEcccccHHHHHHHHHH-HH-cCCEEEEEccCCCCcCCHHHHHHhc-CCCcEEEEEEcccCCeeecccHHHH
Confidence              45689999999999887766433 23 58888888753     789999999 8899999999999999999999999


Q ss_pred             HHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHH-HHHH-HHhhhhhhccCCCc
Q 013079          212 SRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV-NSMM-DLHQGALMLLGPTM  287 (450)
Q Consensus       212 ~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~-~~l~-~~~~~~~~~~g~~~  287 (450)
                      .++|+++|+++|+|++|  +....+..+.++|+++.|.||++|++|  + |+++.+++.. .+.. ..........| ++
T Consensus       159 ~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-g~l~v~~~~~~~p~~~g~~~~~~~~~g-t~  234 (379)
T TIGR03402       159 GEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKG--V-GALYIRKGTRFRPLLRGGHQERGRRAG-TE  234 (379)
T ss_pred             HHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCc--e-EEEEECCCCCCCCcccCCccCCCcCCC-Cc
Confidence            99999999999999998  445556667799999999999888777  5 7776554321 1110 00000001122 22


Q ss_pred             hHHHHH---HHHc-cCCcHHHHHHHHHHHHHHHHHHHHh-CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          288 NPKVAF---ELSE-RIPHLGLRMKEHCHRALIFARRMKK-LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       288 ~~~~a~---~~~~-~~~~l~~~~~~~~~~~~~l~~~L~~-~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      +.....   .++. ..+.+....++..++++++.+.|++ ++. .+..+...                ..+++++|.++.
T Consensus       235 ~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~  298 (379)
T TIGR03402       235 NVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTK----------------RLPNTVNISFEY  298 (379)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCcc----------------CCCCEEEEEecC
Confidence            211111   1111 1123444445667788888888875 543 44332210                123477777764


Q ss_pred             HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHH
Q 013079          362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEK  437 (450)
Q Consensus       362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~  437 (450)
                      .+ ...+...|...   | |.++.|+.|+.....++        ....++|..    .+.||+|++ ..+++++|+.+.+
T Consensus       299 ~~-~~~~~~~l~~~---g-I~v~~g~~c~~~~~~~~--------~~~~~lg~~~~~~~~~vR~S~~-~~~t~~di~~~~~  364 (379)
T TIGR03402       299 IE-GEAILLLLDME---G-ICASSGSACTSGSLEPS--------HVLRAMGVPHTAAHGSIRFSLS-RYNTEEDIDYVLE  364 (379)
T ss_pred             CC-HHHHHHhhccC---C-EEEEchhhcCCCCCCcC--------HHHHHcCCChhhcCceEEEEcC-CCCCHHHHHHHHH
Confidence            43 45677777653   3 78899988765432222        344455653    478999999 9888888888888


Q ss_pred             HHHHhh
Q 013079          438 ALSRMQ  443 (450)
Q Consensus       438 al~~~~  443 (450)
                      +|+++.
T Consensus       365 ~l~~~~  370 (379)
T TIGR03402       365 VLPPII  370 (379)
T ss_pred             HHHHHH
Confidence            887653

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.97  E-value=4.5e-30  Score=261.22  Aligned_cols=330  Identities=17%  Similarity=0.184  Sum_probs=232.7

Q ss_pred             HHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh----ccCCCEE
Q 013079           73 PETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL----CSSGGHV  144 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l----~~~gd~V  144 (450)
                      .+++.+++....+|+.+ .|..+.......+++|+.||+++|+   +.++||+|   +|+++++++.++    +++||+|
T Consensus        49 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g---~t~al~~i~~~~~~~~~~~gd~v  125 (424)
T PLN02855         49 LDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRN---ATEAINLVAYTWGLANLKPGDEV  125 (424)
T ss_pred             HHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCC---HHHHHHHHHHHhhhhcCCCcCEE
Confidence            47777877766677654 3433444445678999999999997   36899999   999999998763    5789999


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG  219 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g  219 (450)
                      +++.++|++....+.....+ .|+++.+++.+     |++++++++ +++|++|++++++||||.+.|+++|+++|+++|
T Consensus       126 l~~~~~~~s~~~~~~~~a~~-~g~~v~~v~~~~~~~~~~~~l~~~i-~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g  203 (424)
T PLN02855        126 ILSVAEHHSNIVPWQLVAQK-TGAVLKFVGLTPDEVLDVEQLKELL-SEKTKLVATHHVSNVLGSILPVEDIVHWAHAVG  203 (424)
T ss_pred             EECCCccHHHHHHHHHHHHH-cCCEEEEEecCCCCCcCHHHHHHHh-ccCceEEEEeCccccccccCCHHHHHHHHHHcC
Confidence            99999999877666544343 68888888753     789999999 789999999999999999999999999999999


Q ss_pred             CEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh-----------------h
Q 013079          220 VTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-----------------L  280 (450)
Q Consensus       220 i~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-----------------~  280 (450)
                      +++++|++|  +...++...+++|+++.|+||++|++|  + |+++.++++++.+.....+.                 .
T Consensus       204 ~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~  280 (424)
T PLN02855        204 AKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTG--I-GFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPS  280 (424)
T ss_pred             CEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCc--c-EEEEEchhhhhcCCCEecCCCceeeeecCccccCCChh
Confidence            999999998  334455556689999999999988777  5 99988887776653221100                 0


Q ss_pred             hccCCCchHHHHHHHHccCC-----cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          281 MLLGPTMNPKVAFELSERIP-----HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       281 ~~~g~~~~~~~a~~~~~~~~-----~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      ....+++.....+.+...++     .+....++..++++++.+.|++++ .++..|.. ..+.            ..+++
T Consensus       281 r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~-~~~~------------~r~~~  347 (424)
T PLN02855        281 RFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKP-SEGV------------GRAAL  347 (424)
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCc-cccc------------CcccE
Confidence            01122222222211111222     233444556778888888888774 46654421 0011            23669


Q ss_pred             EEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          355 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       355 ~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      ++|.+++.. ...+.+.|...  +| |.++.|..|+..              ....+|+ ++.||||++ ..+++++++.
T Consensus       348 v~~~~~~~~-~~~v~~~L~~~--~g-I~v~~g~~c~~~--------------~~~~~g~-~~~iRiS~~-~ynt~~di~~  407 (424)
T PLN02855        348 CAFNVEGIH-PTDLSTFLDQQ--HG-VAIRSGHHCAQP--------------LHRYLGV-NASARASLY-FYNTKEEVDA  407 (424)
T ss_pred             EEEEECCcC-HHHHHHHhccc--CC-EEEechhhhhHH--------------HHHHhCC-CCeEEEEec-cCCCHHHHHH
Confidence            999998543 45677777642  34 677888766521              1123454 378999999 9888888999


Q ss_pred             HHHHHHHhh
Q 013079          435 FEKALSRMQ  443 (450)
Q Consensus       435 l~~al~~~~  443 (450)
                      |.++|+++.
T Consensus       408 l~~~l~~~~  416 (424)
T PLN02855        408 FIHALKDTI  416 (424)
T ss_pred             HHHHHHHHH
Confidence            888887654

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.97  E-value=2.8e-30  Score=260.84  Aligned_cols=339  Identities=17%  Similarity=0.149  Sum_probs=230.2

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc-
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC-  138 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~-  138 (450)
                      ++++++.+. .+++.+++...++||.+ .|.++......++++++.||+++|++  .++||+|   +|+++++++.++. 
T Consensus        10 aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g---~t~a~~~~l~~l~~   86 (402)
T TIGR02006        10 AATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSG---ATESNNLAIKGIAH   86 (402)
T ss_pred             CcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCC---HHHHHHHHHHHHHH
Confidence            355555555 47777887767888864 45555555567899999999999965  6899999   9999999887653 


Q ss_pred             ---cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH
Q 013079          139 ---SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE  210 (450)
Q Consensus       139 ---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~  210 (450)
                         ++||+|+++.++|+++...+... .+ .|+++.+++.+     |++++++++ ++++++|++++++||||.+.|+++
T Consensus        87 ~~~~~g~~Vi~~~~~h~s~~~~~~~~-~~-~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~v~~~~n~tG~~~~~~~  163 (402)
T TIGR02006        87 FYKSKGNHIITSKTEHKAVLDTCRYL-ER-EGFEVTYLPPKSNGLIDLEELKAAI-RDDTILVSIMHVNNEIGVIQDIAA  163 (402)
T ss_pred             hhcCCCCEEEECCCccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEEECCCcCceecccHHH
Confidence               57899999999999988776432 33 58888888754     899999999 788999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh----hhccC
Q 013079          211 LSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLLG  284 (450)
Q Consensus       211 I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~g  284 (450)
                      |.++|+++|+++|+|+++  +...++....++|+++.|+||++|++|  + |+++.+++....+.....+.    ....|
T Consensus       164 I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G--~-G~l~~~~~~~~~~~~~~~g~~~~~~~~~g  240 (402)
T TIGR02006       164 IGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKG--I-GALYVRRKPRVRLEALIHGGGHERGMRSG  240 (402)
T ss_pred             HHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCc--e-EEEEEccCCCCCCCceecCCCccCCccCC
Confidence            999999999999999998  445556666789999999999998777  5 66655443222221111100    00122


Q ss_pred             CCchHH-HHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          285 PTMNPK-VAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       285 ~~~~~~-~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +..... .+. .+++. .+.+..+.++..++++++.+.|++++. .+..+....                ..+++.|.|+
T Consensus       241 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~----------------~p~~~~v~f~  304 (402)
T TIGR02006       241 TLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHR----------------VPGNLNVSFN  304 (402)
T ss_pred             CccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCcccc----------------CCCeEEEEEe
Confidence            221111 111 12211 123455556678888888888887653 333221111                1123334444


Q ss_pred             CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHH
Q 013079          361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFE  436 (450)
Q Consensus       361 ~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~  436 (450)
                      ... .+.+...++.      +.++.|..|+.....+        .....++|++    .+.||+|+| ..+++++++.|.
T Consensus       305 ~~~-~~~~~~~l~~------i~v~~G~~c~~~~~~~--------~~~l~~lg~~~~~~~~~vR~S~~-~~~t~edid~l~  368 (402)
T TIGR02006       305 YVE-GESLIMALKD------LAVSSGSACTSASLEP--------SYVLRALGINDELAHSSIRFTIG-RFTTEEEIDYAV  368 (402)
T ss_pred             CcC-HHHHHHhcCC------EEEechhhcCCCCCCc--------cHHHHHcCCChhhcCceEEEEec-CCCCHHHHHHHH
Confidence            221 3345555543      6888887775432222        2334456664    478999999 888888888888


Q ss_pred             HHHHHhh
Q 013079          437 KALSRMQ  443 (450)
Q Consensus       437 ~al~~~~  443 (450)
                      ++|.++.
T Consensus       369 ~~l~~~~  375 (402)
T TIGR02006       369 KLVKSAI  375 (402)
T ss_pred             HHHHHHH
Confidence            8887664

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.97  E-value=1.3e-29  Score=256.41  Aligned_cols=328  Identities=16%  Similarity=0.181  Sum_probs=232.7

Q ss_pred             HHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHh----ccCCCEE
Q 013079           73 PETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQL----CSSGGHV  144 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l----~~~gd~V  144 (450)
                      .+++.++++..++||.+ .|.+++......+++++.+|+++|++   .+++|+|   +++++++++.++    +++||+|
T Consensus        35 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g---~t~~l~~~~~~~~~~~~~~g~~v  111 (403)
T TIGR01979        35 IDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRG---TTESINLVAYSWGDSNLKAGDEI  111 (403)
T ss_pred             HHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCC---HHHHHHHHHHHhhhhcCCCCCEE
Confidence            47777787777788764 45555555567889999999999965   5899999   999999988765    5789999


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG  219 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g  219 (450)
                      ++++++|++....+...... .|.++++++.+     |++++++++ +++|++|++++++||||.+.|+++|.++|+++|
T Consensus       112 l~~~~~~~s~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~l~~~i-~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~  189 (403)
T TIGR01979       112 VISEMEHHANIVPWQLLAER-TGATLKFIPLDDDGTLDLDDLEKLL-TEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVG  189 (403)
T ss_pred             EECcchhhHHHHHHHHHHHh-cCcEEEEEecCCCCCCCHHHHHHHh-ccCCeEEEEEcccccccccCCHHHHHHHHHHcC
Confidence            99999999876655444333 68888888753     789999999 889999999999999999999999999999999


Q ss_pred             CEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh-----------------h
Q 013079          220 VTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-----------------L  280 (450)
Q Consensus       220 i~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-----------------~  280 (450)
                      +++|+|++|  +....+...+++|+++.|+||++|++|  + |+++.++++++.+.....++                 .
T Consensus       190 ~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G--~-g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  266 (403)
T TIGR01979       190 AKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTG--I-GVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPH  266 (403)
T ss_pred             CEEEEEchhhcCccccCccccCCCEEEEecccccCCCC--c-eEEEEchHHHhcCCCeecCCCceeecccCccccCCChh
Confidence            999999998  333455556689999999999999777  5 89988887766553211100                 0


Q ss_pred             hccCCCchHHH---HHHHHccCC--cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          281 MLLGPTMNPKV---AFELSERIP--HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       281 ~~~g~~~~~~~---a~~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      ....++++...   +..++..+.  ......++..++++++.+.|++++ .++..|.-+.               ..+++
T Consensus       267 ~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~---------------~~~~~  331 (403)
T TIGR01979       267 KFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAE---------------DRGGI  331 (403)
T ss_pred             hcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcc---------------ccCce
Confidence            01111222221   112221111  133445566778888888888774 4665443110               13568


Q ss_pred             EEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          355 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       355 ~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +.|.+++.. ...+.+.|..   .| |.++.|+.|+.-              ....++. ++.||||+| ..+++++++.
T Consensus       332 v~~~~~~~~-~~~~~~~L~~---~g-I~v~~g~~~~~~--------------~~~~~~~-~~~iRiS~~-~~~t~~di~~  390 (403)
T TIGR01979       332 ISFNVEGVH-PHDVGTILDE---EG-IAVRSGHHCAQP--------------LMRRFGV-PATCRASFY-IYNTEEDIDA  390 (403)
T ss_pred             EEEEeCCcC-HHHHHHHHhh---CC-EEEcchhhhhHH--------------HHHHhCC-CCEEEEEec-cCCCHHHHHH
Confidence            999987543 4556666664   33 677777655321              1112332 478999999 8888889999


Q ss_pred             HHHHHHHhhh
Q 013079          435 FEKALSRMQD  444 (450)
Q Consensus       435 l~~al~~~~~  444 (450)
                      |.++|+++.+
T Consensus       391 l~~~l~~~~~  400 (403)
T TIGR01979       391 LVEALKKVRK  400 (403)
T ss_pred             HHHHHHHHHH
Confidence            9998887654

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.97  E-value=7.8e-29  Score=250.15  Aligned_cols=244  Identities=14%  Similarity=0.150  Sum_probs=184.0

Q ss_pred             hHHHHHHHHHHHhC--------C-CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          100 TVLNLSRQMAALEG--------T-EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------~-~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ....+|+.||++++        . +++++|+|   +++++.+++.+++++||+|+++.|+|+.+...+.     ..|.++
T Consensus        70 G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G---~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~  141 (399)
T PRK07681         70 GIQEFHEAVTEYYNNTHNVILNADKEVLLLMG---SQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQ-----MAGATS  141 (399)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCeEEECCC---cHHHHHHHHHHhCCCCCEEEECCCCccchHHHHH-----hcCCEE
Confidence            45567777777653        3 56899999   9999999999999999999999999999988775     368888


Q ss_pred             EEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----
Q 013079          171 TFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----  235 (450)
Q Consensus       171 ~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----  235 (450)
                      ..++.+       |++++++++ .+++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.     
T Consensus       142 ~~v~~~~~~~~~~d~~~l~~~~-~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~  220 (399)
T PRK07681        142 YYMPLKKENDFLPDLELIPEEI-ADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPIS  220 (399)
T ss_pred             EEEecCCCCCCcCCHHHHHHhc-cccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCC
Confidence            777653       688898888 778999999999999999987   7788999999999999999996554321     


Q ss_pred             -cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHH
Q 013079          236 -AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEH  309 (450)
Q Consensus       236 -~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~  309 (450)
                       ..    ...+++++|+||.+|.+|+|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++.+..+.+
T Consensus       221 ~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G~~i~~~~l~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~  298 (399)
T PRK07681        221 FLSVPGAKEVGVEINSLSKSYSLAGSRI-GYMIGNEEIVRALTQFKSNT-DYGVFLPIQKAACAALRNGAAFCEKNRGIY  298 (399)
T ss_pred             hhhCCCCcccEEEEeecccccCCcccee-EEEecCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence             11    135789999999999999998 99999999998887665411 122333444555444443 24455555667


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ  373 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~  373 (450)
                      .++++.+.+.|+++++.+..|.                   .|.++|+.++.......|...+.
T Consensus       299 ~~~~~~l~~~L~~~g~~~~~p~-------------------~g~f~~~~l~~~~~~~~~~~~l~  343 (399)
T PRK07681        299 QERRDTLVDGFRTFGWNVDKPA-------------------GSMFVWAEIPKGWTSLSFAYALM  343 (399)
T ss_pred             HHHHHHHHHHHHHCCCcccCCC-------------------eeeEEEEECCCCCCHHHHHHHHH
Confidence            8888999999998765543332                   46789999874323455666654

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.8e-28  Score=246.68  Aligned_cols=290  Identities=15%  Similarity=0.190  Sum_probs=207.6

Q ss_pred             CChhHHHHHHHHHHHhCC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079           97 FNPTVLNLSRQMAALEGT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..+.++.+++.+++.+|.     +.+++|+|   +++++..++..++.+||+|++++|.|..+...+.     ..|+++.
T Consensus        67 ~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G---~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~  138 (389)
T PRK05957         67 IPPLLEAITQKLQQDNGIELNNEQAIVVTAG---SNMAFMNAILAITDPGDEIILNTPYYFNHEMAIT-----MAGCQPI  138 (389)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCeEEEeCC---hHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHH-----hcCCEEE
Confidence            346678888888888773     35899999   9999999999889999999999999988766553     2688888


Q ss_pred             EeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------c-
Q 013079          172 FVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A-  236 (450)
Q Consensus       172 ~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~-  236 (450)
                      +++.+     |++++++++ ++++++|++.+||||||.+.+   +++|+++|+++|+++|+|++|..+.++.      . 
T Consensus       139 ~v~~~~~~~~d~~~l~~~i-~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~  217 (389)
T PRK05957        139 LVPTDDNYQLQPEAIEQAI-TPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGS  217 (389)
T ss_pred             EeecCCCCCcCHHHHHHhc-CcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhh
Confidence            87654     789999999 788999999999999999987   8899999999999999999986554321      1 


Q ss_pred             ---CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHHH
Q 013079          237 ---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHR  312 (450)
Q Consensus       237 ---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~  312 (450)
                         .....+++.|+||.+|++|+|+ ||++.++++++.+....... ....+.+.+..+...+.. ..++.+..+++.++
T Consensus       218 ~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~  295 (389)
T PRK05957        218 IPGSGNHTISLYSLSKAYGFASWRI-GYMVIPIHLLEAIKKIQDTI-LICPPVVSQYAALGALQVGKSYCQQHLPEIAQV  295 (389)
T ss_pred             CCCccCcEEEEecchhhccCcccee-EEEecCHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence               1135689999999999999998 99999999998887765411 122233445544444433 23456666678888


Q ss_pred             HHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccc
Q 013079          313 ALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       313 ~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      ++.+.+.|++++.  .+..|                   ..|.++|++++...+..+|.+.+..  ..| +.+..|+.+.
T Consensus       296 r~~l~~~L~~~~~~~~~~~~-------------------~gg~~~~~~~~~~~~~~~~~~~l~~--~~g-v~v~pg~~f~  353 (389)
T PRK05957        296 RQILLKSLGQLQDRCTLHPA-------------------NGAFYCFLKVNTDLNDFELVKQLIR--EYR-VAVIPGTTFG  353 (389)
T ss_pred             HHHHHHHHHhcCCCccccCC-------------------CeeEEEEEeCCCCCChHHHHHHHHH--HCC-EEEccchhhC
Confidence            9999999987643  22111                   2466788988743335567776632  123 5666554321


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH---HHHHHHHHHH
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR---WSQFEKALSR  441 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~---i~~l~~al~~  441 (450)
                      .                     ..+++||||+| ..+.+++   ++.|.+.+++
T Consensus       354 ~---------------------~~~~~iRis~~-~~~~~~l~~~~~~l~~~~~~  385 (389)
T PRK05957        354 M---------------------KNGCYLRIAYG-ALQKATAKEGIERLVQGLKT  385 (389)
T ss_pred             C---------------------CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence            0                     01468999999 6555444   4444444443

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.6e-28  Score=248.12  Aligned_cols=273  Identities=19%  Similarity=0.203  Sum_probs=196.3

Q ss_pred             ChhHHHHHHHHHHHhCC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079           98 NPTVLNLSRQMAALEGT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      .+.++.+.+.+++.+|.     +++++|+|   +++++.+++..++++||+|++++|.|+.+...+.     ..|.++..
T Consensus        81 ~~LR~aia~~l~~~~g~~~~~~~~I~it~G---a~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-----~~g~~v~~  152 (405)
T PRK06207         81 ADIRELLAARLAAFTGAPVDAADELIITPG---TQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEMVP  152 (405)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCEEEeCC---cHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEE
Confidence            34455666666666563     56899999   9999999999999999999999999999887775     25666666


Q ss_pred             eCCC----------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013079          173 VDIS----------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----  234 (450)
Q Consensus       173 v~~~----------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----  234 (450)
                      ++.+          |+++|++++ ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++     
T Consensus       153 v~~~~~~~~~~~~~d~~~l~~~~-~~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~  231 (405)
T PRK06207        153 VQLDYLSADKRAGLDLDQLEEAF-KAGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYT  231 (405)
T ss_pred             EeccccCcccCCCcCHHHHHHhh-hhcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCC
Confidence            5532          789999988 778999999999999999986   778899999999999999999665431     


Q ss_pred             -ccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHH
Q 013079          235 -PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKE  308 (450)
Q Consensus       235 -~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~  308 (450)
                       ...    .+..+++.|+||.++.+|+|+ ||+++++++++.+....... ....+.+.+.++..++... .++..++++
T Consensus       232 ~~~~~~~~~~~vi~i~SfSK~~~lpGlRi-G~ii~~~~l~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~  309 (405)
T PRK06207        232 HLRALPIDPENVITIMGPSKTESLSGYRL-GVAFGSPAIIDRMEKLQAIV-SLRAAGYSQAVLRTWFSEPDGWMKDRIAR  309 (405)
T ss_pred             chhcCCCCcCcEEEEecchhhccCcccce-EEEEcCHHHHHHHHHHHhHh-ccCCCHHHHHHHHHHHhCcHHHHHHHHHH
Confidence             111    245699999999999999998 99999999998887765421 1222333444444444322 346667777


Q ss_pred             HHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccc
Q 013079          309 HCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      +.++++.+.+.|+++ +..+..|.                   .|.++|++++.. .....|...+..  +.| +.+..|
T Consensus       310 ~~~~r~~l~~~L~~~~~~~~~~p~-------------------gg~fl~~~l~~~~~~~~~~~~~l~~--~~g-V~v~pG  367 (405)
T PRK06207        310 HQAIRDDLLRVLRGVEGVFVRAPQ-------------------AGSYLFPRLPRLAVSLHDFVKILRL--QAG-VIVTPG  367 (405)
T ss_pred             HHHHHHHHHHHHhcCCCceecCCC-------------------eeEEEEEeCcccCCCHHHHHHHHHH--hcC-EEEeCc
Confidence            788888899999876 33433232                   467899998741 224567776642  123 455555


Q ss_pred             cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                      +.+.                     +..++++|||++ .
T Consensus       368 ~~F~---------------------~~~~~~~Ris~~-~  384 (405)
T PRK06207        368 TEFS---------------------PHTADSIRLNFS-Q  384 (405)
T ss_pred             hHhC---------------------CCCCCeEEEEec-C
Confidence            3210                     012478999999 6

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.97  E-value=3.4e-29  Score=250.68  Aligned_cols=329  Identities=18%  Similarity=0.199  Sum_probs=233.3

Q ss_pred             cCccccCC-HHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhcc
Q 013079           65 SATFTVME-PETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCS  139 (450)
Q Consensus        65 att~~~~~-~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~  139 (450)
                      +++++.+. .+.+.+++...++||.+ .|.++........++++.+++++|.+   .+++|+|   +++++++++.++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g---~t~a~~~~~~~l~~   83 (373)
T cd06453           7 ATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRN---TTEAINLVAYGLGR   83 (373)
T ss_pred             cccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCC---HHHHHHHHHHHhhh
Confidence            34444444 48888888888888765 56666555667889999999999976   6899999   99999999999877


Q ss_pred             ---CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHH
Q 013079          140 ---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL  211 (450)
Q Consensus       140 ---~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I  211 (450)
                         +||+|++++++|++....+...... .|.++++++.+     |++++++++ .+++++|++++++||||.+.|+++|
T Consensus        84 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~tG~~~~~~~i  161 (373)
T cd06453          84 ANKPGDEIVTSVMEHHSNIVPWQQLAER-TGAKLKVVPVDDDGQLDLEALEKLL-TERTKLVAVTHVSNVLGTINPVKEI  161 (373)
T ss_pred             cCCCCCEEEECcchhHHHHHHHHHHHhh-cCcEEEEeecCCCCCcCHHHHHHHh-cCCceEEEEeCcccccCCcCCHHHH
Confidence               8999999999999876554333333 68888888764     899999999 7799999999999999999999999


Q ss_pred             HHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh---------
Q 013079          212 SRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL---------  280 (450)
Q Consensus       212 ~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~---------  280 (450)
                      .++|+++|+++|+|+++  +....+....++|+++.|++|+++++|  + |+++.++++++.+.....+..         
T Consensus       162 ~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g--~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  238 (373)
T cd06453         162 GEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTG--I-GVLYGKEELLEEMPPYGGGGEMIEEVSFEE  238 (373)
T ss_pred             HHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCC--c-EEEEEchHHhhcCCCeecCCCccccccccc
Confidence            99999999999999998  333334445689999999999999855  5 899888888776654321110         


Q ss_pred             --------hccCCCchHH---HHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhc
Q 013079          281 --------MLLGPTMNPK---VAFELSERI--PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMAN  346 (450)
Q Consensus       281 --------~~~g~~~~~~---~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~  346 (450)
                              .....++...   +...++..+  ..+..+.++..++++++.+.|++++ .++..+. .             
T Consensus       239 ~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~-------------  304 (373)
T cd06453         239 TTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDA-E-------------  304 (373)
T ss_pred             cccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCc-c-------------
Confidence                    0111122211   111112111  2344555666788888999998875 3544221 0             


Q ss_pred             cCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079          347 KEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG  426 (450)
Q Consensus       347 ~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~  426 (450)
                         ..+++++|.+++. ...++.+.|...   | +.++.|+.|+.-              ....+|. .+.||||+| ..
T Consensus       305 ---~~~~~~~~~~~~~-~~~~i~~~l~~~---g-i~i~~g~~~~~~--------------~~~~~~~-~~~iRis~~-~~  360 (373)
T cd06453         305 ---DRAGVVSFNLEGI-HPHDVATILDQY---G-IAVRAGHHCAQP--------------LMRRLGV-PGTVRASFG-LY  360 (373)
T ss_pred             ---ccCCeEEEEECCc-CHHHHHHHHHHC---C-EEeccCccchhH--------------HHHHhCC-CCeEEEEec-CC
Confidence               2356899998753 245677776642   3 556666544321              1112332 478999999 98


Q ss_pred             CHHHHHHHHHHHH
Q 013079          427 TLDQRWSQFEKAL  439 (450)
Q Consensus       427 ~~~~~i~~l~~al  439 (450)
                      ++++.++.|.++|
T Consensus       361 ~t~~di~~~~~~l  373 (373)
T cd06453         361 NTEEEIDALVEAL  373 (373)
T ss_pred             CCHHHHHHHHhhC
Confidence            9999999988764

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK07324 transaminase; Validated

Probab=99.97  E-value=1.4e-28  Score=245.97  Aligned_cols=250  Identities=17%  Similarity=0.178  Sum_probs=185.3

Q ss_pred             ccccCCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccC
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      +.|+..  ....+||+.||++++   ++++++|+|   +++|+.+++.+++.+||+|+++.|.|..+...+.     ..|
T Consensus        56 ~~Y~~~--~G~~~lr~~ia~~~~~~~~~~vi~t~G---~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-----~~g  125 (373)
T PRK07324         56 LTYGWI--EGSPEFKEAVASLYQNVKPENILQTNG---ATGANFLVLYALVEPGDHVISVYPTYQQLYDIPE-----SLG  125 (373)
T ss_pred             ccCCCC--CCCHHHHHHHHHHhcCCChhhEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcC
Confidence            345542  234579999999874   467899999   9999999999999999999999999998877664     367


Q ss_pred             eeEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc--
Q 013079          168 ITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--  235 (450)
Q Consensus       168 ~~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--  235 (450)
                      .++++++.+       |++++++++ ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.  
T Consensus       126 ~~v~~v~~~~~~~~~~d~~~l~~~~-~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~  204 (373)
T PRK07324        126 AEVDYWQLKEENGWLPDLDELRRLV-RPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGST  204 (373)
T ss_pred             CEEEEEecccccCCCCCHHHHHHhC-CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCC
Confidence            788777642       788998888 789999999999999999988   8899999999999999999996654421  


Q ss_pred             ---cCC-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCc-HHHHHHHHH
Q 013079          236 ---ARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH-LGLRMKEHC  310 (450)
Q Consensus       236 ---~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~-l~~~~~~~~  310 (450)
                         .+. +..+++.|+||.+|++|+|+ ||+++++++++.+...+.. .....+.+.+..+..++...+. +....+.++
T Consensus       205 ~s~~~~~~~~I~~~s~SK~~~~~G~Ri-G~i~~~~~li~~~~~~~~~-~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~  282 (373)
T PRK07324        205 PSIADLYEKGISTNSMSKTYSLPGIRV-GWIAANEEVIDILRKYRDY-TMICAGVFDDMLASLALEHRDAILERNRKIVR  282 (373)
T ss_pred             CChhhccCCEEEEecchhhcCCcccee-EEEecCHHHHHHHHHHhCc-EEecCChHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence               111 35688999999999999999 9999999999998877652 2233445555555555443322 333344467


Q ss_pred             HHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013079          311 HRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL  372 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l  372 (450)
                      ++++.+.+.|++++. .+..|.                   .|..+++.++.......|.+++
T Consensus       283 ~~~~~l~~~l~~~~~~~~~~p~-------------------gg~~~~i~~~~~~~~~~~~~~l  326 (373)
T PRK07324        283 TNLAILDEWVAKEPRVSYVKPK-------------------AVSTSFVKLDVDMPSEDFCLKL  326 (373)
T ss_pred             HHHHHHHHHHhcCCCceEECCC-------------------ceEEEEEEeCCCCCHHHHHHHH
Confidence            788888888887643 444443                   3445666665222345676665

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.97  E-value=1.9e-28  Score=247.40  Aligned_cols=286  Identities=17%  Similarity=0.162  Sum_probs=204.8

Q ss_pred             hhHHHHHHHHHHHh----C-----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079           99 PTVLNLSRQMAALE----G-----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus        99 ~~~~~l~~~iA~l~----g-----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      .....+++.+|+++    |     ++ ++++|+|   +++++..++.+++++||+|+++.|.|+.+...++     ..|.
T Consensus        81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~G---s~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~  152 (410)
T PRK06290         81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIG---SKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTK-----YYGG  152 (410)
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccC---HHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHH-----HcCC
Confidence            34566777777764    3     23 5899999   9999999999999999999999999999888775     3677


Q ss_pred             eEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013079          169 TTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----  234 (450)
Q Consensus       169 ~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~----  234 (450)
                      ++..++.+       |++++++++ .+++++|++++||||||.+.+   +++|+++|+++|++||+|++|..+.++    
T Consensus       153 ~v~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~  231 (410)
T PRK06290        153 EVYNLPLLEENNFLPDLDSIPKDI-KEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPL  231 (410)
T ss_pred             EEEEEecCCCcCCcCCHHHHHHhh-cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCc
Confidence            77777653       788888888 778999999999999999987   678888899999999999999554321    


Q ss_pred             -ccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079          235 -PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH  309 (450)
Q Consensus       235 -~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~  309 (450)
                       ...    .+.+++++|+||.+|++|+|+ ||+++++++++.+....... ......+.+.++..++...+++....+++
T Consensus       232 s~~~~~~~~~~~I~i~SfSK~~g~~GlRi-G~ii~~~~l~~~l~~~~~~~-~~~~~~~~q~aa~~~l~~~~~~~~~~~~~  309 (410)
T PRK06290        232 SFLSVPGAKEVGVEIHSLSKAYNMTGWRL-AFVVGNELIVKAFATVKDNN-DSGQFIAIQKAGIYALDHPEITEKIREKY  309 (410)
T ss_pred             ChhcCCCccccEEEEeechhhcCCchhhe-EeEEeCHHHHHHHHHHHhcc-ccCCcHHHHHHHHHHhhCcHHHHHHHHHH
Confidence             111    146799999999999999999 99999999998887665421 11122344555544544444455566677


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-------HHHHHHHHHhhccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-------~~~~~~~~~l~~~~~~g~i~  382 (450)
                      .++++.+.+.|+++++.+..|.                   .|.++|+.++..       ....+|.+.|...+  + +.
T Consensus       310 ~~~~~~l~~~L~~~g~~~~~p~-------------------g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~--~-v~  367 (410)
T PRK06290        310 SRRLDKLVKILNEVGFKAEMPG-------------------GTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEK--L-IS  367 (410)
T ss_pred             HHHHHHHHHHHHhCCCeecCCC-------------------eeeEEEEECCCccccCCCCCCHHHHHHHHHHhC--C-EE
Confidence            8889999999998876544332                   355778888732       13556777765421  1 22


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC----CCCHHHHHHHHHHHHHHh
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY----LGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~----~~~~~~~i~~l~~al~~~  442 (450)
                      +-.|          ..               ..+++||++++    .++.+++++.|.++|.++
T Consensus       368 ~~p~----------~~---------------~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~  406 (410)
T PRK06290        368 TVPW----------DD---------------AGHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV  406 (410)
T ss_pred             EECC----------cc---------------ccCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence            1111          10               02689999983    355666666666666554

>PRK12414 putative aminotransferase; Provisional

Probab=99.97  E-value=4.5e-28  Score=243.32  Aligned_cols=219  Identities=18%  Similarity=0.230  Sum_probs=168.4

Q ss_pred             hhHHHHHHHHHHHhCC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEGT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +.++.+++.+++++|.     +.+++|+|   +++++.+++++++.+||+|+++.|+|..+...+.     ..|.++..+
T Consensus        70 ~lr~~ia~~l~~~~g~~~~~~~~i~it~g---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v  141 (384)
T PRK12414         70 ALREALAEKTERLYGARYDPASEVTVIAS---ASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVR-----LQGATPVAI  141 (384)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEECC---hHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-----HcCCEEEEE
Confidence            4556666666677675     35899999   9999999999999999999999999998877765     256666666


Q ss_pred             CCC------CHHHHHHhhhcCCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC-----c-cC-
Q 013079          174 DIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS-----P-AR-  237 (450)
Q Consensus       174 ~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~-----~-~~-  237 (450)
                      +.+      |++.|++++ ++++++|++++||||||.+.   ++++|+++|+++|+++|+|++|..+.++     + .. 
T Consensus       142 ~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  220 (384)
T PRK12414        142 KLSPEDFRVNWDEVAAAI-TPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARH  220 (384)
T ss_pred             ecCccccccCHHHHHhhc-CcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccC
Confidence            543      789999988 77899999999999999985   5788899999999999999999655432     1 11 


Q ss_pred             ---CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013079          238 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL  314 (450)
Q Consensus       238 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~  314 (450)
                         .+..+++.|+||.+|.+|+|+ ||+++++++++.+...... .....+.+.+.++..++..........+.++++++
T Consensus       221 ~~~~~~~i~~~SfSK~~~~pGlRi-G~~v~~~~l~~~l~~~~~~-~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~  298 (384)
T PRK12414        221 RELAERSVIVSSFGKSYHVTGWRV-GYCLAPAELMDEIRKVHQF-MVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRD  298 (384)
T ss_pred             cCccCcEEEEecccccccCccceE-EEEecCHHHHHHHHHHHhh-eecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence               135699999999999999999 9999999999888776541 12334555565555555443333344456788899


Q ss_pred             HHHHHHHhCCCeee
Q 013079          315 IFARRMKKLGLKVL  328 (450)
Q Consensus       315 ~l~~~L~~~~~~v~  328 (450)
                      .+.+.|++++..+.
T Consensus       299 ~l~~~L~~~g~~~~  312 (384)
T PRK12414        299 LLARELAGSRFELL  312 (384)
T ss_pred             HHHHHHHhCCCeec
Confidence            99999998765543

>PLN00175 aminotransferase family protein; Provisional

Probab=99.97  E-value=5.7e-28  Score=244.43  Aligned_cols=243  Identities=19%  Similarity=0.219  Sum_probs=182.0

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..+||+.+|+++    |    .+ .+++|+|   +++|+.+++.+++++||+|++++|.|+.+...+.     ..|.++.
T Consensus        93 ~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G---~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~  164 (413)
T PLN00175         93 VPELNSAIAERFKKDTGLVVDPEKEVTVTSG---CTEAIAATILGLINPGDEVILFAPFYDSYEATLS-----MAGAKIK  164 (413)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEeCC---HHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEE
Confidence            445666666554    3    23 5889999   9999999999999999999999999999887775     3577777


Q ss_pred             EeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cC
Q 013079          172 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----AR  237 (450)
Q Consensus       172 ~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~~  237 (450)
                      .++.+      |+++|++++ .+++++|++++||||||.+.+   +++|+++|+++++++|+|++|..+.++.     ..
T Consensus       165 ~v~~~~~~~~~~~~~l~~~~-~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~  243 (413)
T PLN00175        165 TVTLRPPDFAVPEDELKAAF-TSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMAS  243 (413)
T ss_pred             EEECCcccCCCCHHHHHHhc-CcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhh
Confidence            77643      688999988 778999999999999999975   7789999999999999999996654321     11


Q ss_pred             ----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHHHHH
Q 013079          238 ----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHR  312 (450)
Q Consensus       238 ----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~  312 (450)
                          .+..++++|+||.++.+|+|+ ||+++++++++.+...... .....+.+.+.++..++... .++....+++.++
T Consensus       244 ~~~~~~~vi~i~SfSK~~~~~G~Ri-G~~v~~~~l~~~l~~~~~~-~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~  321 (413)
T PLN00175        244 LPGMYERTVTMNSLGKTFSLTGWKI-GWAIAPPHLTWGVRQAHSF-LTFATATPMQWAAVAALRAPESYYEELKRDYSAK  321 (413)
T ss_pred             CCCCcCcEEEEecchhhccCcchhe-eeeEeCHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                146799999999999999999 9999999999888766541 12334445555555555433 3455566678889


Q ss_pred             HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--CHHHHHHHHHHhh
Q 013079          313 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--TEEKANRLMNYLQ  373 (450)
Q Consensus       313 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--~~~~~~~~~~~l~  373 (450)
                      ++.+.+.|++++..+..|.                   .|.++++.+.  +......|...|.
T Consensus       322 ~~~l~~~L~~~g~~~~~p~-------------------g~~f~~~~~~~~~~~~~~~~~~~ll  365 (413)
T PLN00175        322 KDILVEGLKEVGFKVYPSS-------------------GTYFVMVDHTPFGFENDIAFCEYLI  365 (413)
T ss_pred             HHHHHHHHHHCCCeecCCC-------------------eeEEEEEeccccCCCCHHHHHHHHH
Confidence            9999999998866544332                   3557888874  2212456666653

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.97  E-value=6.4e-29  Score=248.51  Aligned_cols=328  Identities=20%  Similarity=0.223  Sum_probs=235.7

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCC-CCccccCCCChhHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHHHHHh-
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGTEA---AYCTASDKAGMSAISSVLMQL-  137 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~-~~~~y~r~~~~~~~~l~~~iA~l~g~~~---~~~tsg~~~gt~ai~~al~~l-  137 (450)
                      +++++..+. .+++.+.+...++||. +.+.+++.....++++++.+|+++|++.   ++|++|   +|++++.++.++ 
T Consensus         6 ~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~---~t~a~~~~~~~l~   82 (371)
T PF00266_consen    6 AGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSN---GTEALNAVASSLL   82 (371)
T ss_dssp             SSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESS---HHHHHHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccc---cchhhhhhhhccc
Confidence            455555555 4888888888888883 4455666667888999999999999765   799999   999999999998 


Q ss_pred             --ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH
Q 013079          138 --CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE  210 (450)
Q Consensus       138 --~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~  210 (450)
                        +++|++|++++.+|++....+.....+ .|.++++++.+     |++++++++ ++++++|++.+.+|.+|.+.|+++
T Consensus        83 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-~g~~v~~i~~~~~~~~~~~~~~~~l-~~~~~lv~~~~~~~~tG~~~pi~~  160 (371)
T PF00266_consen   83 NPLKPGDEVLVTSNEHPSNRYPWEEIAKR-KGAEVRVIPADPGGSLDLEDLEEAL-NPDTRLVSISHVENSTGVRNPIEE  160 (371)
T ss_dssp             HHGTTTCEEEEEESSHHHHHHHHHHHHHH-TTEEEEEEEEGTTSSCSHHHHHHHH-HTTESEEEEESBETTTTBBSSHHH
T ss_pred             ccccccccccccccccccccccccccccc-chhhhccccccccchhhhhhhhhhh-ccccceEEeecccccccEEeeece
Confidence              789999999999999999777655444 68888887643     899999999 799999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh----------
Q 013079          211 LSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----------  278 (450)
Q Consensus       211 I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~----------  278 (450)
                      |.++||++|+++++|.++  +...++..++++|++++|.+|++||+|  + |+++.+++.++++.....+          
T Consensus       161 I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G--~-g~l~v~~~~~~~~~p~~~~~~~~~~~~~~  237 (371)
T PF00266_consen  161 IAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPG--L-GFLYVRPEAIERLRPAKPGGGYLDFPSLQ  237 (371)
T ss_dssp             HHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSST--E-EEEEEEHHHHHHHHTSSSSSSTTTHHHHH
T ss_pred             ehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCc--h-hhheehhhhhhccccccccccccccccch
Confidence            999999999999999998  666677778899999999999777777  5 8998888888777322110          


Q ss_pred             -------hhhccCCCchHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHh
Q 013079          279 -------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMA  345 (450)
Q Consensus       279 -------~~~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~  345 (450)
                             .....+++++......+...++.     ++...++..++.+++.+.|.+++. .+..|...            
T Consensus       238 ~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~------------  305 (371)
T PF00266_consen  238 EYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDE------------  305 (371)
T ss_dssp             HHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCG------------
T ss_pred             hcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeeccc------------
Confidence                   01122334333322222122222     233445568888899999999876 44443211            


Q ss_pred             ccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          346 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       346 ~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                         ...+++++|.+++.+ ...+...|...+    |.++.|..|....            ...  .+. .+.||+|++ .
T Consensus       306 ---~~~~~i~~~~~~~~~-~~~~~~~L~~~~----I~~~~G~~~~~~~------------~~~--~~~-~~~iRvS~~-~  361 (371)
T PF00266_consen  306 ---PRRPSIVSFNLPGSD-ADDVVKYLEERG----IAVSTGSACAGPS------------LDI--LGM-GGVIRVSLH-Y  361 (371)
T ss_dssp             ---GBGTTEEEEEETTSS-HHHHHHHHHHHT----EEEEESTTTCHHH------------HHH--HHT-TTEEEEE-G-T
T ss_pred             ---ccccceEEEeecCCC-HHHHHHHHhhcC----EEEeccCcccHHH------------HHH--hCC-CCEEEEecc-C
Confidence               135779999998543 355555555422    6777787665110            011  112 289999999 9


Q ss_pred             CCHHHHHHHH
Q 013079          426 GTLDQRWSQF  435 (450)
Q Consensus       426 ~~~~~~i~~l  435 (450)
                      .++++++++|
T Consensus       362 ~nt~~dv~~l  371 (371)
T PF00266_consen  362 YNTEEDVDRL  371 (371)
T ss_dssp             TSSHHHHHHH
T ss_pred             CCCHHHHhhC
Confidence            9999998876

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.97  E-value=3.7e-28  Score=243.37  Aligned_cols=283  Identities=15%  Similarity=0.144  Sum_probs=205.7

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +..+...+||+.||++++.  +.+++|+|   +++++.+++..++++||+|++++|.|+.+...+.     ..|.++..+
T Consensus        83 Yp~~~~~~lr~~ia~~~~~~~~~I~~t~G---a~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~-----~~g~~~~~v  154 (380)
T PLN03026         83 YPDPESRRLRAALAEDSGLESENILVGCG---ADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAA-----VNGAEVIKV  154 (380)
T ss_pred             CCCCCHHHHHHHHHHHhCcChhhEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEe
Confidence            3445578899999999985  45899999   9999999999999999999999999987776554     267788777


Q ss_pred             CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc------cCCCCeE
Q 013079          174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGADV  242 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~------~~~g~di  242 (450)
                      +.+     |++++++++.++++++|++++||||||.+.+.+++.++++.. +++|+|++|..+....      ...+..+
T Consensus       155 ~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~vi  233 (380)
T PLN03026        155 PRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLI  233 (380)
T ss_pred             ecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEE
Confidence            653     788998887456899999999999999999999999999865 8999999995553221      1225789


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      +++|+||.+|++|+|+ ||+++++++++.+...+..   ...+.+.+.++..++...+++.+..+++.++++++.+.|++
T Consensus       234 v~~SfSK~~glaGlRi-Gy~~~~~~~i~~l~~~~~~---~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~  309 (380)
T PLN03026        234 VLRTFSKRAGLAGLRV-GYGAFPLSIIEYLWRAKQP---YNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKE  309 (380)
T ss_pred             EEecchHhhcCccccc-eeeecCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 9999999999888766542   22233444454444443344555566678888999999998


Q ss_pred             CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCC
Q 013079          323 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE  402 (450)
Q Consensus       323 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~  402 (450)
                      ++.....|.                   .|+++++.++.......|.+.|...   | +.+..++.      +       
T Consensus       310 ~~~~~~~p~-------------------~~~f~~~~~~~~~~~~~~~~~l~~~---g-I~v~~~~~------~-------  353 (380)
T PLN03026        310 VPFLEPYPS-------------------DANFILCRVTSGRDAKKLKEDLAKM---G-VMVRHYNS------K-------  353 (380)
T ss_pred             CCCCeECCC-------------------CCeEEEEECCCCCCHHHHHHHHHHC---C-eEEEECCC------C-------
Confidence            764222332                   4668999887322245676666542   2 44443211      0       


Q ss_pred             CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          403 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       403 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                               + .+++||||+| .   .+..+.|.++|++
T Consensus       354 ---------~-~~~~lRis~~-~---~~~~~~l~~al~~  378 (380)
T PLN03026        354 ---------E-LKGYIRVSVG-K---PEHTDALMEALKQ  378 (380)
T ss_pred             ---------C-CCCEEEEecC-C---HHHHHHHHHHHHH
Confidence                     1 1478999999 4   2334555555543

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.97  E-value=2.3e-28  Score=233.01  Aligned_cols=242  Identities=23%  Similarity=0.287  Sum_probs=190.8

Q ss_pred             CCccccC-CC-ChhHHHHHHHHHHHhCC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHh
Q 013079           89 DFFIYSR-HF-NPTVLNLSRQMAALEGT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF  161 (450)
Q Consensus        89 ~~~~y~r-~~-~~~~~~l~~~iA~l~g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~  161 (450)
                      +.+.|+| ++ .+.++.|++.+++++|.     +++++|+|   +.+|+..++++++.+||+||+.+|.|.+|.....  
T Consensus        61 ~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~G---A~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~--  135 (420)
T KOG0257|consen   61 STNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAG---ANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVV--  135 (420)
T ss_pred             hhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecC---chHHHHHHHHHHcCCCCEEEEecCcchhhhhHHh--
Confidence            4456665 23 35678888899987763     45899999   9999999999999999999999999999998875  


Q ss_pred             CCCccCeeEEEeCCC-------------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEe
Q 013079          162 FPRACNITTTFVDIS-------------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVD  225 (450)
Q Consensus       162 ~~~~~g~~v~~v~~~-------------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD  225 (450)
                         +.|...++++..             |.++++.++ +++||+|++++||||||.+.+   |++|+++|++||+++|+|
T Consensus       136 ---maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~-t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisD  211 (420)
T KOG0257|consen  136 ---MAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKI-TEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISD  211 (420)
T ss_pred             ---hcCCcceeeccccccccccCccccCChHHHHhhc-cCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEh
Confidence               466666666542             899999999 999999999999999999965   889999999999999999


Q ss_pred             CCCCCCCCCccC----------CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHH
Q 013079          226 NTFSPLVLSPAR----------LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL  295 (450)
Q Consensus       226 ~~~~~~~~~~~~----------~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~  295 (450)
                      ++|..+.+++.+          ....+-++|++|.+|..|||+ ||+++++.++..+....+.. .+..+++.+.+...+
T Consensus       212 evYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrl-GW~igp~~L~~~~~~vh~~~-~~~~~Tp~q~A~a~a  289 (420)
T KOG0257|consen  212 EVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRL-GWAIGPKHLYSALFPVHQNF-VFTCPTPIQEASAAA  289 (420)
T ss_pred             hHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeee-eeeechHHhhhhHHHHhhcc-ccccCcHHHHHHHHH
Confidence            999666555432          247899999999999999999 99999888888887766632 233344444443332


Q ss_pred             Hc-cC--------CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          296 SE-RI--------PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       296 ~~-~~--------~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      .. .+        .......+.++++++.|.+.|.+++.++..|.                   .+.+++.+++
T Consensus       290 ~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~~p~-------------------gayyl~adfs  344 (420)
T KOG0257|consen  290 FALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLKVTGPE-------------------GAYYLWADFS  344 (420)
T ss_pred             HhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccccCC-------------------CceEEEEecc
Confidence            22 11        22334667789999999999999988887665                   4568888887

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2e-27  Score=238.63  Aligned_cols=244  Identities=19%  Similarity=0.181  Sum_probs=177.5

Q ss_pred             hhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           99 PTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      +.++.+.+.+.+.+|    .+++++|+|   +++++.+++..++++||+|++++|.|+.+...+.     ..|.++..++
T Consensus        65 ~lr~~la~~~~~~~~~~~~~~~i~~t~g---~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~  136 (382)
T PRK06108         65 ELREALARYVSRLHGVATPPERIAVTSS---GVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPK-----ILGARVVCVP  136 (382)
T ss_pred             HHHHHHHHHHHHHhCCCcCcceEEEeCC---hHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHH-----HCCCEEEEee
Confidence            334444444444445    367899999   9999999999999999999999999998887764     3677877776


Q ss_pred             CC--------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----c--c
Q 013079          175 IS--------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P--A  236 (450)
Q Consensus       175 ~~--------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~--~  236 (450)
                      .+        |++++++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+.     +  .
T Consensus       137 ~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~  215 (382)
T PRK06108        137 LDFGGGGWTLDLDRLLAAI-TPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFL  215 (382)
T ss_pred             CCCCCCCccCCHHHHHHhc-CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHh
Confidence            52        688999988 778999999999999999865   678999999999999999998555332     0  1


Q ss_pred             C----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHH
Q 013079          237 R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH  311 (450)
Q Consensus       237 ~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~  311 (450)
                      .    .+.++++.|+||.+|++|+|+ ||+++++++++.+..... ......+.+.+.++..++.. .+++.+..+++.+
T Consensus       216 ~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  293 (382)
T PRK06108        216 DIAEPDDRIIFVNSFSKNWAMTGWRL-GWLVAPPALGQVLEKLIE-YNTSCVAQFVQRAAVAALDEGEDFVAELVARLRR  293 (382)
T ss_pred             hcCCCcCCEEEEeechhhccCcccce-eeeeCCHHHHHHHHHHHH-hcccCCChHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            1    135799999999999999998 999999999888876543 11122334444444444443 2345556667788


Q ss_pred             HHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013079          312 RALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL  372 (450)
Q Consensus       312 ~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l  372 (450)
                      +++.+.+.|++++ ..+..|.                   .|.++++.++.......|.+.|
T Consensus       294 ~~~~l~~~L~~~~~~~~~~p~-------------------~g~~~~~~l~~~~~~~~~~~~l  336 (382)
T PRK06108        294 SRDHLVDALRALPGVEVAKPD-------------------GAMYAFFRIPGVTDSLALAKRL  336 (382)
T ss_pred             HHHHHHHHHHhCCCCcccCCC-------------------eeEEEEEeCCCCCCHHHHHHHH
Confidence            8889999998763 3433221                   3557788887432345666665

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=6.6e-28  Score=237.39  Aligned_cols=281  Identities=11%  Similarity=0.105  Sum_probs=194.9

Q ss_pred             ccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           93 YSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ..+|..+...+|+++||+++|.  +.+++|+|   +++++.+++. ++.+| .|++.+|+|+.+...++     ..|.++
T Consensus        34 ~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~G---s~~~l~~~~~-~~~~~-~vv~~~P~y~~y~~~~~-----~~G~~v  103 (332)
T PRK06425         34 ISIYPEISYTDIEDQIKIYTQGLKIKVLIGPG---LTHFIYRLLS-YINVG-NIIIVEPNFNEYKGYAF-----THGIRI  103 (332)
T ss_pred             cccCcCcCHHHHHHHHHHHhCCCcceEEECCC---HHHHHHHHHH-HhCCC-cEEEeCCChHHHHHHHH-----HcCCeE
Confidence            4567788899999999999986  45899999   9999999986 56776 57777999999988875     368888


Q ss_pred             EEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----c----CCC
Q 013079          171 TFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----A----RLG  239 (450)
Q Consensus       171 ~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----~----~~g  239 (450)
                      ..++.++.+...+.+...++++|++++||||||.+.+   +++|+++|+++++++|+||+|..+..+.    .    ..+
T Consensus       104 ~~vp~~~~~~~~~~l~~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~  183 (332)
T PRK06425        104 SALPFNLINNNPEILNNYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYG  183 (332)
T ss_pred             EEEeCCcccCcHHHHhhcCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCC
Confidence            8887642111122332347899999999999999977   5677888899999999999996664321    1    124


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCc-HHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPH-LGLRMKEHCHRALIFA  317 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~-l~~~~~~~~~~~~~l~  317 (450)
                      ..++++|+||.+|++|+|+ ||+++++++++.+.....    ...  .+..++..+.. ..+. +....+.++++++.+.
T Consensus       184 ~vi~~~SfSK~~~l~GlRi-Gy~v~~~~li~~l~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~  256 (332)
T PRK06425        184 NVIIGRSLTKILGIPSLRI-GYIATDDYNMKISRKITE----PWS--VCDPAIDFIRSIDLDYVAKHSLDIMENERSYLI  256 (332)
T ss_pred             CEEEEeecHHhcCCchhhh-eeeecCHHHHHHHHHcCC----CCc--cCHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999 999999999988876433    111  12222212111 1122 3344566788899999


Q ss_pred             HHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccccc
Q 013079          318 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS  397 (450)
Q Consensus       318 ~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~  397 (450)
                      +.|++++..+..|.                   .|+++++.+++   ...|.+.|...   | +.+..|+...       
T Consensus       257 ~~L~~~g~~~~~~~-------------------~g~f~~~~~~~---~~~~~~~l~~~---g-i~v~~~~~f~-------  303 (332)
T PRK06425        257 NNLEAMGFRAAGDP-------------------SANFITFMIPD---AHDFYSYLLKN---G-ILVRLLDDYE-------  303 (332)
T ss_pred             HHHHHCCCEECCCC-------------------CceEEEEEcCC---HHHHHHHHHHC---C-eEEEECCCCC-------
Confidence            99998876543232                   36689998872   45566666542   3 4544442210       


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          398 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       398 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                    +..+++||||+| .   .+..+.|.++|++
T Consensus       304 --------------~~~~~~iRis~~-~---~~~~~~l~~al~~  329 (332)
T PRK06425        304 --------------CLGEQYIRIAIR-R---RSFNIKLVNALRN  329 (332)
T ss_pred             --------------CCCCCEEEEEeC-C---HHHHHHHHHHHHH
Confidence                          111478999999 3   2334455555554

>PRK08960 hypothetical protein; Provisional

Probab=99.96  E-value=2.7e-27  Score=238.02  Aligned_cols=280  Identities=19%  Similarity=0.190  Sum_probs=197.0

Q ss_pred             hHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...++|+.+|++++        .+++++|+|   +++|+++++..++.+||+|++++|+|+.+...+.     ..|.++.
T Consensus        70 g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G---~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~  141 (387)
T PRK08960         70 GLPALREAIAGFYAQRYGVDVDPERILVTPG---GSGALLLASSLLVDPGKHWLLADPGYPCNRHFLR-----LVEGAAQ  141 (387)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEEccC---cHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----hcCCeEE
Confidence            45667888888752        467899999   9999999999999999999999999999988775     2455665


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A  236 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~  236 (450)
                      .++.+       |++++++++ +++++++++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.     .
T Consensus       142 ~v~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~  220 (387)
T PRK08960        142 LVPVGPDSRYQLTPALVERHW-NADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVL  220 (387)
T ss_pred             EEecCcccCCCCCHHHHHHHh-CccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChh
Confidence            55432       688999988 778999999999999999987   5577778999999999999996554321     1


Q ss_pred             CC-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-C-CcHHHHHHHHHHHH
Q 013079          237 RL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-I-PHLGLRMKEHCHRA  313 (450)
Q Consensus       237 ~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~-~~l~~~~~~~~~~~  313 (450)
                      .. ...++++|+||.+|++|+|+ ||+++++++++.+....... ....+.+.+.++..++.. . .++....+.+.+++
T Consensus       221 ~~~~~vi~~~S~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~  298 (387)
T PRK08960        221 EVDDDAFVLNSFSKYFGMTGWRL-GWLVAPPAAVPELEKLAQNL-YISASTPAQHAALACFEPETLAILEARRAEFARRR  298 (387)
T ss_pred             hccCCEEEEeecccccCCcccEE-EEEEcCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHH
Confidence            12 35689999999999999998 99999999998887665421 122344455544444432 1 34555556678889


Q ss_pred             HHHHHHHHhCCCee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccccccc
Q 013079          314 LIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       314 ~~l~~~L~~~~~~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      +.+.+.|++++..+ ..|.                   .|.++|++++. ......|...+..  +.| +.+..|+.+..
T Consensus       299 ~~l~~~L~~~~~~~~~~p~-------------------g~~f~~~~~~~~~~~~~~~~~~ll~--~~g-i~v~pg~~f~~  356 (387)
T PRK08960        299 DFLLPALRELGFGIAVEPQ-------------------GAFYLYADISAFGGDAFAFCRHFLE--TEH-VAFTPGLDFGR  356 (387)
T ss_pred             HHHHHHHHhcCCcCCcCCC-------------------eeEEEEEeccccCCCHHHHHHHHHH--hCC-EEEcCchHhCC
Confidence            99999998876533 2232                   46688988863 1224566655421  123 45555533210


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                                          +..+++||||++ . +.+.+.+.
T Consensus       357 --------------------~~~~~~iRi~~~-~-~~~~l~~a  377 (387)
T PRK08960        357 --------------------HQAGQHVRFAYT-Q-SLPRLQEA  377 (387)
T ss_pred             --------------------CCCCCeEEEEec-C-CHHHHHHH
Confidence                                012468999999 6 33433333

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.96  E-value=2e-27  Score=238.75  Aligned_cols=283  Identities=18%  Similarity=0.190  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHh----CC----C-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----GT----E-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g~----~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++|+.+|+++    |.    + .+++|+|   +++++..++..++++||+|++++|+|+.+...+.     ..|.++.
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G---~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~G~~v~  140 (383)
T TIGR03540        69 MLAYRQAVADWYKRRFGVELDPETEVLSLIG---SKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTL-----FAGGEPY  140 (383)
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCeEEECCC---cHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHH-----hcCCEEE
Confidence            355667776654    32    3 4788999   9999999999999999999999999999887764     3677777


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------  235 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------  235 (450)
                      .++.+       |++++++++ .+++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.      
T Consensus       141 ~v~~~~~~g~~~d~~~l~~~~-~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~  219 (383)
T TIGR03540       141 EMPLKEENGFLPDFDAIPEDI-AKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSF  219 (383)
T ss_pred             EEecCcccCCccCHHHHHhhc-cccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCc
Confidence            76642       678898888 778999999999999999987   6899999999999999999995543211      


Q ss_pred             cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHH
Q 013079          236 AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHC  310 (450)
Q Consensus       236 ~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~  310 (450)
                      ..    ...++++.|+||.+|.+|+|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++.+..+.+.
T Consensus       220 ~~~~~~~~~~i~~~SfSK~~g~~GlRi-G~~i~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  297 (383)
T TIGR03540       220 LEVDGAKDVGIEFHSLSKTYNMTGWRI-GMAVGNADLIAGLGKVKTNV-DSGVFQAIQYAAIAALNGPQDVVKEIRKIYQ  297 (383)
T ss_pred             ccCCCcccCEEEEEecccccCCcccee-eEEeCCHHHHHHHHHHHHhc-ccCCChHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            11    135688999999999999999 99999999998887665411 112222344444444433 244555566678


Q ss_pred             HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccc
Q 013079          311 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      ++++.+.+.|++++..+..|.                   .|.++|+.+++......|.+.+..  +.| +.+..|+.+.
T Consensus       298 ~~~~~~~~~L~~~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~ll~--~~g-i~v~~g~~f~  355 (383)
T TIGR03540       298 RRRDLLLEALKKIGIDVEKPK-------------------ATFYVWVPVPEGYTSAEFAARLLE--ETG-VVVTPGVGFG  355 (383)
T ss_pred             HHHHHHHHHHHhCCCEecCCC-------------------cceEEEEECCCCCCHHHHHHHHHH--HCC-EEEecchhhC
Confidence            889999999998876554332                   355789998743235567766532  122 4555443320


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .                     ...++||||+| .. .    +.|.++++.+.
T Consensus       356 ~---------------------~~~~~~Ris~~-~~-~----~~l~~~l~~l~  381 (383)
T TIGR03540       356 E---------------------YGEGYIRISLT-VP-D----ERLEEAVARIK  381 (383)
T ss_pred             c---------------------cCCCeEEEEec-CC-H----HHHHHHHHHHh
Confidence            0                     01478999999 64 2    35666666554

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08068 transaminase; Reviewed

Probab=99.96  E-value=1.3e-27  Score=240.44  Aligned_cols=285  Identities=15%  Similarity=0.145  Sum_probs=202.0

Q ss_pred             hhHHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      +...+||+++|+++    |    .+ ++++|+|   +++++..++..++++||+|++++|+|+.+...+.     ..|.+
T Consensus        70 ~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G---~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~  141 (389)
T PRK08068         70 RGYPFLKEAAADFYKREYGVTLDPETEVAILFG---GKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVA-----LARAQ  141 (389)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC---cHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCE
Confidence            34567888888875    3    24 5889999   9999999999999999999999999999887765     36777


Q ss_pred             EEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccCH---HHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013079          170 TTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSP----  235 (450)
Q Consensus       170 v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l---~~I~~la~~~gi~livD~~~~~~~~~~----  235 (450)
                      +..++.+       |++++++++ .+++++|++++||||||.+.+.   ++|+++|+++++++|+|++|..+.++.    
T Consensus       142 ~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~  220 (389)
T PRK08068        142 FETMPLIAENNFLPDYTKIPEEV-AEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPV  220 (389)
T ss_pred             EEEeecccccCCCCCHHHHHHhc-cccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCc
Confidence            7777653       678888888 6789999999999999999875   688889999999999999995543321    


Q ss_pred             --cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccC-CCchHHHHHHHHc-cCCcHHHHHH
Q 013079          236 --AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG-PTMNPKVAFELSE-RIPHLGLRMK  307 (450)
Q Consensus       236 --~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g-~~~~~~~a~~~~~-~~~~l~~~~~  307 (450)
                        ..    .+..+++.|+||.+|.+|+|+ ||+++++++++.+.......  ..+ ..+.+.++...+. ..+++....+
T Consensus       221 s~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~  297 (389)
T PRK08068        221 SFLQTPGAKDVGIELYTLSKTFNMAGWRV-AFAVGNESVIEAINLLQDHL--FVSLFGAIQDAAIEALLSDQSCVAELVA  297 (389)
T ss_pred             ChhhCCCccCCEEEEecchhccCCcccee-EeEecCHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhCcHHHHHHHHH
Confidence              11    135689999999999999999 99999999999887765521  112 1223344333332 2344555666


Q ss_pred             HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccc
Q 013079          308 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      ++.++++.+.+.|+++++.+..|.                   .|.++|+.+++......|.+.+...  .| +.+..|.
T Consensus       298 ~~~~~r~~~~~~L~~~g~~~~~~~-------------------g~~~~~v~~~~~~~~~~~~~~l~~~--~g-i~v~pg~  355 (389)
T PRK08068        298 RYESRRNAFISACREIGWEVDAPK-------------------GSFFAWMPVPKGYTSEQFADLLLEK--AH-VAVAPGN  355 (389)
T ss_pred             HHHHHHHHHHHHHHHCCCcccCCC-------------------eeEEEEEECCCCCCHHHHHHHHHHh--CC-EEEecch
Confidence            788889999999988875543222                   3456799987432355676666531  22 4554442


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      ...                     ...+++||||++ ..+     +.|.++++++.+
T Consensus       356 ~f~---------------------~~~~~~iRi~~~-~~~-----~~l~~al~~l~~  385 (389)
T PRK08068        356 GFG---------------------EHGEGYVRVGLL-TDE-----ERLREAVERIGK  385 (389)
T ss_pred             HhC---------------------ccCCCeEEEEEc-CCH-----HHHHHHHHHHHH
Confidence            210                     011478999999 632     355566665544

>PRK07682 hypothetical protein; Validated

Probab=99.96  E-value=1.5e-27  Score=239.16  Aligned_cols=272  Identities=19%  Similarity=0.232  Sum_probs=195.6

Q ss_pred             hhHHHHHHHHHHHhC--------CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALEG--------TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g--------~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      +....+|+.+|++++        .+ ++++|+|   +++|+.+++..++++||+|++++|+|+.+...+.     ..|.+
T Consensus        57 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~  128 (378)
T PRK07682         57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVG---ASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVT-----LAGGV  128 (378)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCC---hHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHH-----HcCCE
Confidence            445667777777763        23 6899999   9999999999999999999999999998877765     24556


Q ss_pred             EEEeCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013079          170 TTFVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----  235 (450)
Q Consensus       170 v~~v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----  235 (450)
                      +..++.       .|++++++++ .+++++|++++||||||.+.+   +++|+++|+++++++|+|++|..+.++.    
T Consensus       129 ~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~  207 (378)
T PRK07682        129 PVPVATTLENEFKVQPAQIEAAI-TAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTS  207 (378)
T ss_pred             EEEeecCCccCCCCCHHHHHhhc-CcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCC
Confidence            555543       2789999988 778999999999999999975   8899999999999999999996554321    


Q ss_pred             -cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHH
Q 013079          236 -AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEH  309 (450)
Q Consensus       236 -~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~  309 (450)
                       ..    ...++++.|+||.++.+|+|+ ||+++++++++.+..... ......+.+.+.++..++.. ..++....+.+
T Consensus       208 ~~~~~~~~~~~i~~~S~SK~~~~~GlR~-G~~~~~~~~i~~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~  285 (378)
T PRK07682        208 FASIKGMRERTILISGFSKGFAMTGWRL-GFIAAPVYFSEAMLKIHQ-YSMMCAPTMAQFAALEALRAGNDDVIRMRDSY  285 (378)
T ss_pred             hhhcccccCCEEEEecCcccccChhhhh-hhhhcCHHHHHHHHHHHH-hhccCCCHHHHHHHHHHHhCChHHHHHHHHHH
Confidence             11    146799999999999999999 999999999998876554 11123344455555444443 23455556667


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYY  388 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~  388 (450)
                      +++++.+.+.|++++..+..|.                   .|.++|+.++ .......|.+.+..  ..| +.+..|..
T Consensus       286 ~~~~~~~~~~L~~~~~~~~~p~-------------------g~~~~~~~~~~~~~~~~~~~~~ll~--~~g-v~v~pg~~  343 (378)
T PRK07682        286 RKRRNFFVTSFNEIGLTCHVPG-------------------GAFYAFPSISSTGLSSEEFAEQLLL--EEK-VAVVPGSV  343 (378)
T ss_pred             HHHHHHHHHHHHHCCCccCCCC-------------------eeEEEEEeccCCCCCHHHHHHHHHH--hCC-EEEcCchh
Confidence            8999999999998866543332                   3457777774 11124566666532  123 45555533


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          389 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       389 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                      +.                     .-.+++||||++ .
T Consensus       344 f~---------------------~~~~~~iRis~~-~  358 (378)
T PRK07682        344 FG---------------------ESGEGFIRCSYA-T  358 (378)
T ss_pred             hC---------------------cCCCCeEEEEeC-C
Confidence            20                     001478999999 6

>PRK09082 methionine aminotransferase; Validated

Probab=99.96  E-value=1.1e-27  Score=240.75  Aligned_cols=286  Identities=17%  Similarity=0.163  Sum_probs=201.5

Q ss_pred             hhHHHHHHHHHHHhCC----C-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEGT----E-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~----~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +.++.+.+.+.++++.    + .+++|+|   +++|+.+++.+++.+||+|+++.|.|.++...++     ..|.++..+
T Consensus        71 ~lr~~~a~~l~~~~~~~~~~~~~i~~t~G---~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-----~~g~~~~~~  142 (386)
T PRK09082         71 ALREAIAAKTARLYGRQYDADSEITVTAG---ATEALFAAILALVRPGDEVIVFDPSYDSYAPAIE-----LAGGRAVRV  142 (386)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEeCC---HHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHH-----HcCCEEEEE
Confidence            3456666666666664    2 5899999   9999999999999999999999999999887775     257777777


Q ss_pred             CCC------CHHHHHHhhhcCCceEEEEecCCCCcccc---cCHHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC-
Q 013079          174 DIS------DHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS------PAR-  237 (450)
Q Consensus       174 ~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~~~------~~~-  237 (450)
                      +.+      |++++++++ ++++++|++++|+||||.+   .++++|.++|+++|+++|+|++|..+.++      ... 
T Consensus       143 ~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~  221 (386)
T PRK09082        143 ALQPPDFRVDWQRFAAAI-SPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRH  221 (386)
T ss_pred             ecCcccccCCHHHHHHhc-CccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhC
Confidence            653      788999988 7789999999999999988   46889999999999999999998554332      111 


Q ss_pred             ---CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHHHHHHHHHHH
Q 013079          238 ---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCHRA  313 (450)
Q Consensus       238 ---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~~~~~~~  313 (450)
                         .+..++++|+||.+|.+|+|+ ||+++++++++.+...... .....+.+.+.++...+. ..+++.+..+.+++++
T Consensus       222 ~~~~~~~i~~~S~SK~~~~~G~Ri-G~iv~~~~l~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~  299 (386)
T PRK09082        222 PELRERAFVVSSFGKTYHVTGWKV-GYCVAPAALSAEFRKVHQY-NTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKR  299 (386)
T ss_pred             cCccCcEEEEeechhhccchhhhh-hhhhCCHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence               146799999999999999999 9999999999888776541 113344445554444443 3334444555678889


Q ss_pred             HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHh-hccccccccccccccccc
Q 013079          314 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYL-QNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       314 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l-~~~~~~g~i~vs~G~~~s  390 (450)
                      +.+.+.|++.+..+..|                   ..|.++|+.++.  ......|...| ..   .| +.+..|+...
T Consensus       300 ~~~~~~L~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~l~~~---~~-v~v~pg~~f~  356 (386)
T PRK09082        300 DRFRAALANSRFKLLPC-------------------EGTYFQLVDYSAISDLDDVEFCQWLTRE---HG-VAAIPLSVFY  356 (386)
T ss_pred             HHHHHHHHhCCCcccCC-------------------CeeEEEEEeccccCCCCHHHHHHHHHHh---CC-EEEeCcHHhC
Confidence            99999998866554322                   245678888862  11245566654 32   23 4555443210


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .                   .+...+.+|||++ . + ++   .+.+++++++
T Consensus       357 ~-------------------~~~~~~~~Ri~~~-~-~-~~---~l~~~~~rl~  384 (386)
T PRK09082        357 A-------------------DPFPHRLVRLCFA-K-Q-EE---TLDAAAERLC  384 (386)
T ss_pred             C-------------------CCCCCCEEEEEec-C-C-HH---HHHHHHHHHh
Confidence            0                   0112578999999 6 3 22   4444444443

>PLN02187 rooty/superroot1

Probab=99.96  E-value=2.8e-27  Score=242.10  Aligned_cols=217  Identities=16%  Similarity=0.165  Sum_probs=163.1

Q ss_pred             hhHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           99 PTVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      .....+|+.||++++        .+++++|+|   +++|+.+++.+++++||+|++++|+|+.+...+.     ..|.++
T Consensus       108 ~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G---~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~  179 (462)
T PLN02187        108 AGILPARRAVADYMNRDLPHKLTPEDIFLTAG---CNQGIEIVFESLARPNANILLPRPGFPHYDARAA-----YSGLEV  179 (462)
T ss_pred             CChHHHHHHHHHHHHHhcCCCCCcccEEEeCC---HHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHH-----HcCCEE
Confidence            346678888888763        467899999   9999999999999999999999999999876664     257777


Q ss_pred             EEeCC---C----CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----
Q 013079          171 TFVDI---S----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----  235 (450)
Q Consensus       171 ~~v~~---~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----  235 (450)
                      ..++.   +    |++++++++ ++++++|++++||||||.+.+   +++|+++|+++|+++|+||+|..+.+..     
T Consensus       180 ~~~~l~~~~~~~~d~~~l~~~~-~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s  258 (462)
T PLN02187        180 RKFDLLPEKEWEIDLEGIEAIA-DENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVS  258 (462)
T ss_pred             EEEeCccccCCccCHHHHHHhc-CCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcee
Confidence            77654   1    789999988 788999999999999999976   7889999999999999999996654321     


Q ss_pred             -cCC---CCeEEEeCCCCccccCccceEEEEEcC-H-HH---HHHHHHHhhhhhhccC-CCchHHHHHHHHcc--CCcHH
Q 013079          236 -ARL---GADVVVHSISKFISGGADIIAGAVCGP-A-NL---VNSMMDLHQGALMLLG-PTMNPKVAFELSER--IPHLG  303 (450)
Q Consensus       236 -~~~---g~di~~~S~sK~~g~~g~~igG~l~~~-~-~~---~~~l~~~~~~~~~~~g-~~~~~~~a~~~~~~--~~~l~  303 (450)
                       ..+   ...++++|+||.|+.+|+|+ ||++++ + .+   ++.+...+.......+ +.+.+.++..++..  .+++.
T Consensus       259 ~~~~~~~~~vi~l~SfSK~f~~pGlRi-G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~  337 (462)
T PLN02187        259 MGKFASIVPVLTLAGISKGWVVPGWKI-GWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFA  337 (462)
T ss_pred             HHHhccCCcEEEEecchhhcCCcccee-EEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHH
Confidence             111   24689999999999999999 999873 3 22   3455444432211112 34445555444432  23455


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCC
Q 013079          304 LRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      ...+.+.++++.+.+.|++++.
T Consensus       338 ~~~~~l~~~r~~l~~~L~~~~~  359 (462)
T PLN02187        338 KKNKILKHNVDLVCDRLKDIPC  359 (462)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCC
Confidence            6666788899999999988754

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.96  E-value=1.7e-27  Score=239.65  Aligned_cols=242  Identities=13%  Similarity=0.138  Sum_probs=176.8

Q ss_pred             hHHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          100 TVLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       100 ~~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ...+||+.||+++    |    .+ .+++|+|   +++++.+++..++.+||+|++++|+|+.+...+.     ..|.++
T Consensus        69 G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G---s~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~  140 (388)
T PRK07366         69 GTLDFREAAAQWYEQRFGLAVDPETEVLPLIG---SQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVY-----LAGGQI  140 (388)
T ss_pred             CCHHHHHHHHHHHHHhhCCcCCCcCeEEECCC---cHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEE
Confidence            3456777777765    3    34 5889999   9999999999999999999999999999987775     367777


Q ss_pred             EEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----
Q 013079          171 TFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----  235 (450)
Q Consensus       171 ~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----  235 (450)
                      ..++.+       |++++++.+ .+++++|++++||||||.+.+   +++|+++|+++|+++|+||+|..+.++.     
T Consensus       141 ~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~  219 (388)
T PRK07366        141 YPMPLRAENDFLPVFADIPTEV-LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPP  219 (388)
T ss_pred             EEEECCCccCCCCCHHHHHHhh-cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCC
Confidence            777653       567787777 668999999999999999976   5678889999999999999996654321     


Q ss_pred             --cCC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCC-CchHHHHHHHHc-cCCcHHHHHH
Q 013079          236 --ARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP-TMNPKVAFELSE-RIPHLGLRMK  307 (450)
Q Consensus       236 --~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~~~~~-~~~~l~~~~~  307 (450)
                        ..+    ...++++|+||.+|.+|+|+ ||+++++++++.+.......  ..+. ...+..+...+. ..+++....+
T Consensus       220 ~~~~~~~~~~~vi~~~SfSK~~g~~GlRi-G~~v~~~~li~~l~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~l~~~~~  296 (388)
T PRK07366        220 SILQADPEKSVSIEFFTLSKSYNMGGFRI-GFAIGNAQLIQALRQVKAVV--DFNQYRGILNGAIAALTGPQATVQQTVQ  296 (388)
T ss_pred             ChhhCCCCcccEEEEeecccccCCcchhh-eehcCCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHhCcHHHHHHHHH
Confidence              111    24588999999999999999 99999999999887765521  1122 111223323322 2234555666


Q ss_pred             HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHh
Q 013079          308 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYL  372 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l  372 (450)
                      .+.++++.+.+.|++++..+..|.                   .|.++|+.++..  ....+|.+.+
T Consensus       297 ~~~~~r~~l~~~L~~~~~~~~~p~-------------------~g~f~~~~~~~~~~~~~~~~~~~l  344 (388)
T PRK07366        297 IFRQRRDAFINALHQIGWPVPLPE-------------------ATMYVWAKLPEPWQGNSVEFCTQL  344 (388)
T ss_pred             HHHHHHHHHHHHHHHCCCcccCCC-------------------eeEEEEEECCcccCCCHHHHHHHH
Confidence            778889999999988765433332                   577899998742  1134565554

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.96  E-value=3.2e-27  Score=231.94  Aligned_cols=288  Identities=18%  Similarity=0.212  Sum_probs=218.2

Q ss_pred             ccCCCChhHHHHHHHHHHHhC-C--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           93 YSRHFNPTVLNLSRQMAALEG-T--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g-~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      +.||.++...++++.+|++++ .  +.+++++|   ++|.+..+++.++.+||.|+++.|+|..+...++     ..|.+
T Consensus        51 ~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnG---sde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~-----~~g~~  122 (356)
T COG0079          51 LNRYPDPDYRELRAALAEYYGVVDPENVLVGNG---SDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQ-----LAGAE  122 (356)
T ss_pred             hccCCCCcHHHHHHHHHHHhCCCCcceEEEcCC---hHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHH-----hcCCe
Confidence            557778889999999999999 4  46788999   9999999999999999999999999999988775     47888


Q ss_pred             EEEeCC----CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCCCCCC-Ccc----CC
Q 013079          170 TTFVDI----SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVL-SPA----RL  238 (450)
Q Consensus       170 v~~v~~----~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~-~~~----~~  238 (450)
                      +..++.    .|++.+.+++ ++++++|++++||||||...+.++|.+++...  +.++|+||+|.+|.- +..    ..
T Consensus       123 ~~~v~~~~~~~d~~~~~~~~-~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~  201 (356)
T COG0079         123 VVKVPLKEFRLDLDAILAAI-RDKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYP  201 (356)
T ss_pred             EEEecccccccCHHHHHHhh-hcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCC
Confidence            888876    4788999888 66899999999999999999888887777753  889999999965543 111    23


Q ss_pred             CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013079          239 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR  318 (450)
Q Consensus       239 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~  318 (450)
                      +..+++.|+||+||.+|.|+ ||+++++++++.+...+..   +.-+.+...++..++...+++....++....++++.+
T Consensus       202 ~nlivlRTfSKa~gLAGlRl-Gy~ia~~~~i~~l~~vr~p---~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~  277 (356)
T COG0079         202 PNLIVLRTFSKAFGLAGLRV-GYAIANPELIAALNKVRPP---FNVSSPALAAAIAALRDADYLEESVERIREERERLYA  277 (356)
T ss_pred             CCEEEEEecHHhhhcchhce-eeccCCHHHHHHHHHhcCC---CCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999 9999999999999988762   2234445555555555556677778888999999999


Q ss_pred             HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccc
Q 013079          319 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS  398 (450)
Q Consensus       319 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~  398 (450)
                      .|+.++..-.+|.                   .++++.+.++..+ +..+.+.|...   | +.+...           .
T Consensus       278 ~l~~~~~~~v~pS-------------------~aNFvlv~~~~~~-~~~l~~~L~~~---g-iivR~~-----------~  322 (356)
T COG0079         278 ALKALGLFGVFPS-------------------QANFVLVRVPDAE-AAALAEALLKK---G-ILVRDC-----------S  322 (356)
T ss_pred             HHHhCCCCeecCC-------------------CCcEEEEECCCcc-HHHHHHHHHHC---C-EEEEeC-----------C
Confidence            9999874323454                   3568999988633 45666776542   2 222111           0


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       399 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .           .+..++++|||+| .  .++- +.|.++|.++.
T Consensus       323 ~-----------~~~~~~~lRitvg-t--~een-~~ll~AL~~~~  352 (356)
T COG0079         323 S-----------VGLLPGYLRITVG-T--PEEN-DRLLAALREVL  352 (356)
T ss_pred             C-----------CCCCCCeEEEEeC-C--HHHH-HHHHHHHHHHH
Confidence            0           1233679999999 3  2332 56666665543

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=8.7e-28  Score=239.27  Aligned_cols=279  Identities=20%  Similarity=0.197  Sum_probs=203.7

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ......++++.+|++++.  +++++|+|   +++++..++.+++++||+|++++|+|+.+...+.     ..|.++..++
T Consensus        62 p~~g~~~lr~~ia~~~~~~~~~i~~t~G---~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~-----~~g~~~~~~~  133 (359)
T PRK03158         62 PDGYAPELRTKVAKHLGVDEEQLLFGAG---LDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAI-----IEGAEVREVP  133 (359)
T ss_pred             CCCcHHHHHHHHHHHhCCCHHHEEECCC---HHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEEe
Confidence            334577899999999985  46899999   9999999999999999999999999999877664     2577777776


Q ss_pred             CC----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc---c------CCC
Q 013079          175 IS----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP---A------RLG  239 (450)
Q Consensus       175 ~~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~---~------~~g  239 (450)
                      .+    |++++++++ ++++++|++++||||||.+.+.++|.++++.  +|+++|+||+|..+.+..   .      ..+
T Consensus       134 ~~~~~~d~~~l~~~~-~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  212 (359)
T PRK03158        134 LKDGGHDLEAMLKAI-DEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYE  212 (359)
T ss_pred             cCCCCcCHHHHHHhc-CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcC
Confidence            53    789998888 7889999999999999999999999998876  599999999995543211   1      125


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR  319 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~  319 (450)
                      .++++.|+||.+|++|+|+ ||+++++++++.+...+..   ...+.+.+.++..++...+++....+.+.++++.+.+.
T Consensus       213 ~vi~~~S~SK~~g~~GlRi-G~~v~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  288 (359)
T PRK03158        213 NLIVLRTFSKAYGLAALRV-GYGIASEELIEKLNIARPP---FNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAF  288 (359)
T ss_pred             CEEEEEechHhhcCcchhh-ehhcCCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999 9999999999888766541   23344555555555543334444445567778888888


Q ss_pred             HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccccccc
Q 013079          320 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST  399 (450)
Q Consensus       320 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~  399 (450)
                      |++++..+ .|.                   .|.++++.++.  ....+.+.|...   | +.+..|+..          
T Consensus       289 l~~~~~~~-~~~-------------------~g~~i~~~~~~--~~~~~~~~l~~~---g-v~v~~g~~f----------  332 (359)
T PRK03158        289 CKEYGLFY-YPS-------------------QTNFIFVDTGR--DANELFEALLKK---G-YIVRSGAAL----------  332 (359)
T ss_pred             HHHCCCee-CCC-------------------cCcEEEEECCC--CHHHHHHHHHHC---C-eEEeeCCCC----------
Confidence            88876544 232                   35688888752  234566666532   3 555555321          


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          400 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       400 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                  +. +++||||++ .   .+..+.+.++|++
T Consensus       333 ------------~~-~~~iRi~~~-~---~~~~~~l~~al~~  357 (359)
T PRK03158        333 ------------GF-PTGVRITIG-L---KEQNDKIIELLKE  357 (359)
T ss_pred             ------------CC-CCeEEEecC-C---HHHHHHHHHHHHH
Confidence                        11 478999999 3   3334444444443

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.96  E-value=1.2e-27  Score=241.54  Aligned_cols=331  Identities=14%  Similarity=0.136  Sum_probs=222.9

Q ss_pred             cCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh---c
Q 013079           65 SATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL---C  138 (450)
Q Consensus        65 att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l---~  138 (450)
                      +++++.+. .+++.+.+.....++.+.|.++....+..+++++.+++++|++  .+++++|   +++++++++.++   +
T Consensus        25 ~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~---~t~~l~~~~~~~~~~~  101 (397)
T TIGR01976        25 AGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGAN---ATSLTFLLSRAISRRW  101 (397)
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC---HHHHHHHHHHHHHhcC
Confidence            33333333 4777777765555555555544444466899999999999974  4899999   999998877665   5


Q ss_pred             cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHH
Q 013079          139 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS  212 (450)
Q Consensus       139 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~  212 (450)
                      ++||+|++++++|.+....+...... .|.++.+++.+      |++++++++ +++|++|++++|+||||.+.|+++|.
T Consensus       102 ~~gd~vl~~~~~~~s~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~i-~~~~~lv~i~~~~n~tG~~~~~~~i~  179 (397)
T TIGR01976       102 GPGDEVIVTRLDHEANISPWLQAAER-AGAKVKWARVDEATGELHPDDLASLL-SPRTRLVAVTAASNTLGSIVDLAAIT  179 (397)
T ss_pred             CCCCEEEEcCCchHhHHHHHHHHHHh-cCCEEEEEeccccCCCcCHHHHHHhc-CCCceEEEEeCCCCCCCccCCHHHHH
Confidence            78999999999998876655333333 68888887653      689999999 78899999999999999999999999


Q ss_pred             HHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh------hhccC
Q 013079          213 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA------LMLLG  284 (450)
Q Consensus       213 ~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~------~~~~g  284 (450)
                      ++|+++|+++++|+++  +....+..+.++|+++.|+||++|+   ++ |+++.++++++.+......+      .....
T Consensus       180 ~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~---~~-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  255 (397)
T TIGR01976       180 ELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGP---HM-GILWGRPELLMNLPPYKLTFSYDTGPERFEL  255 (397)
T ss_pred             HHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCC---ce-EEEEEcHHHHhhCCCccccCccCCCcchhcC
Confidence            9999999999999998  3333455556899999999999974   35 99988888877664322111      00111


Q ss_pred             CCchHH------HHHHHHccCC-------------cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHH
Q 013079          285 PTMNPK------VAFELSERIP-------------HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSM  344 (450)
Q Consensus       285 ~~~~~~------~a~~~~~~~~-------------~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~  344 (450)
                      ++++..      .+...+....             .+....++..++++++.+.|++++ .++..+.-.   .       
T Consensus       256 gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~---~-------  325 (397)
T TIGR01976       256 GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARL---A-------  325 (397)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCc---c-------
Confidence            222211      1111111111             022223344667788888888776 466544200   0       


Q ss_pred             hccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC--CCeEEEEe
Q 013079          345 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSV  422 (450)
Q Consensus       345 ~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~--~~~iRiS~  422 (450)
                           ..++++.|.+++.. ...+.+.|...   | |.++.|+.|..              ......+++  .+.||||+
T Consensus       326 -----~~~~~~~~~~~~~~-~~~l~~~L~~~---g-I~v~~~~~~~~--------------~~~~~~~~~~~~~~iRis~  381 (397)
T TIGR01976       326 -----ARVPTVSFTVHGLP-PQRVVRRLADQ---G-IDAWAGHFYAV--------------RLLRRLGLNDEGGVVRVGL  381 (397)
T ss_pred             -----CCCceEEEEeCCcC-HHHHHHHHHHC---C-eEEEeCccchH--------------HHHHHhCCCCCCCeEEEEe
Confidence                 13568888887532 45677777653   3 66776655431              111223443  46899999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 013079          423 GYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       423 g~~~~~~~~i~~l~~al  439 (450)
                      + ..+++++++.|.++|
T Consensus       382 ~-~~~t~~di~~l~~~l  397 (397)
T TIGR01976       382 A-HYNTAEEVDRLLEAL  397 (397)
T ss_pred             e-ccCCHHHHHHHHHhC
Confidence            9 888888899887764

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=1e-27  Score=238.78  Aligned_cols=276  Identities=14%  Similarity=0.154  Sum_probs=199.0

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ......++++.||++++.  +++++|+|   +++++.+++.+++++||+|+++.|+|+.+...+.     ..|.++..++
T Consensus        62 p~~g~~~Lr~aia~~~~~~~~~I~vt~G---s~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~v~~v~  133 (366)
T PRK01533         62 PDGGATTLRQTIANKLHVKMEQVLCGSG---LDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAI-----IEGCEVKEVA  133 (366)
T ss_pred             CCCCHHHHHHHHHHHhCCCcceEEECCC---HHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH-----HcCCEEEEee
Confidence            344567899999999975  56899999   9999999999999999999999999999988775     3688888877


Q ss_pred             CC----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHH---hcCCEEEEeCCCCCCCCC-----cc----CC
Q 013079          175 IS----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH---DKGVTVVVDNTFSPLVLS-----PA----RL  238 (450)
Q Consensus       175 ~~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~---~~gi~livD~~~~~~~~~-----~~----~~  238 (450)
                      .+    |++++++++ ++++++|++++||||||.+.+.+++.++++   +++ ++|+||+|..+...     ..    ..
T Consensus       134 ~~~~~~d~~~l~~~~-~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~  211 (366)
T PRK01533        134 LNNGVYDLDEISSVV-DNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKH  211 (366)
T ss_pred             cCCCCcCHHHHHHHh-CcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccC
Confidence            64    799999988 778999999999999999998666655554   444 67889998443221     11    12


Q ss_pred             CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013079          239 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR  318 (450)
Q Consensus       239 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~  318 (450)
                      +..+++.|+||.+|++|+|+ ||+++++++++.+...+..   ...+.+.+.++..++...++.....+...++++++.+
T Consensus       212 ~~vi~~~SfSK~~~l~GlRi-G~~i~~~~~~~~l~~~~~~---~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~  287 (366)
T PRK01533        212 KNILVLRTFSKAYGLASFRV-GYAVGHEELIEKLNVVRLP---FNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYES  287 (366)
T ss_pred             CCEEEEeCchHHhcChHHHH-hHHhCCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999 9999999999988766531   2334445555555554433444444556777788888


Q ss_pred             HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccc
Q 013079          319 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS  398 (450)
Q Consensus       319 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~  398 (450)
                      .|+.+++.+..|                    .|+++++.+++   ...+.+.|...   | +.|..             
T Consensus       288 ~l~~~g~~~~~~--------------------~~nf~~~~~~~---~~~~~~~l~~~---G-I~Vr~-------------  327 (366)
T PRK01533        288 FCKENEIPFYQS--------------------QTNFIFLPVEN---GGEIYEACAHA---G-FIIRP-------------  327 (366)
T ss_pred             HHHhCCCccCCC--------------------cCcEEEEeCCC---HHHHHHHHHHC---C-cEEcc-------------
Confidence            888776544322                    36689998863   34566666642   2 33221             


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       399 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                    . +++||||+|..++.+.+++.|.+.++.
T Consensus       328 --------------~-~~~iRis~~~~~~~~~l~~al~~~~~~  355 (366)
T PRK01533        328 --------------F-PNGVRITVGTREQNEGVISVLQQHFEN  355 (366)
T ss_pred             --------------C-CCceEEeCCCHHHHHHHHHHHHHHHHh
Confidence                          0 257999999335555555555555443

>PRK07179 hypothetical protein; Provisional

Probab=99.96  E-value=1.2e-26  Score=234.78  Aligned_cols=312  Identities=15%  Similarity=0.169  Sum_probs=219.3

Q ss_pred             HHHHHhhcCCCCCC--CCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCc
Q 013079           74 ETMRRMFAGELGPD--RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY  151 (450)
Q Consensus        74 ~~~~~~~~~~~~n~--~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y  151 (450)
                      +++.+.++....++  ++.|.   .+.+...+|+++||+++|.+.+++|+|   |++|+.+++++++.+||+|++..+.|
T Consensus        75 ~a~~~~~~~~~~~~~~s~~~~---~~~~~~~~le~~la~~~g~~~~~~~~s---G~~An~~~l~~l~~~g~~v~~~~~~h  148 (407)
T PRK07179         75 KAQIAALQEEGDSLVMSAVFL---HDDSPKPQFEKKLAAFTGFESCLLCQS---GWAANVGLLQTIADPNTPVYIDFFAH  148 (407)
T ss_pred             HHHHHHHHHhCCCCCcccccc---CCchHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHHHHhCCCCCEEEEECCcC
Confidence            56666665544444  23332   234578899999999999999999999   99999999999999999999999999


Q ss_pred             hhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-
Q 013079          152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-  230 (450)
Q Consensus       152 ~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-  230 (450)
                      .+....+.     ..|.++..++..|+++|++++.+.++++|++++++||||.++|+++|.++|+++|+++|+|++|+. 
T Consensus       149 ~s~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g  223 (407)
T PRK07179        149 MSLWEGVR-----AAGAQAHPFRHNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLG  223 (407)
T ss_pred             HHHHHHHH-----HCCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECccccc
Confidence            98876653     257777777777999999999333588999999999999999999999999999999999999832 


Q ss_pred             -CCCC------ccC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH-H-HHHccC
Q 013079          231 -LVLS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA-F-ELSERI  299 (450)
Q Consensus       231 -~~~~------~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a-~-~~~~~~  299 (450)
                       +...      ...  .++|+++.|+||.+|++   + |++++++++++.+....... ...++...+..+ . .++...
T Consensus       224 ~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~---~-G~l~~~~~~~~~~~~~~~~~-~~~~t~~~~~~aa~~aal~~~  298 (407)
T PRK07179        224 THGPQGAGLVAELGLTSRVHFITASLAKAFAGR---A-GIITCPRELAEYVPFVSYPA-IFSSTLLPHEIAGLEATLEVI  298 (407)
T ss_pred             CcCCCCCchHHhcCCCCCCCEEEeechHhhhcc---C-eEEEeCHHHHHHHHHhCcCe-eeCCCCCHHHHHHHHHHHHHH
Confidence             2111      111  14689999999999853   4 99999888877665433211 112222222222 1 222233


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079          300 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG  379 (450)
Q Consensus       300 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g  379 (450)
                      .....+.+++.++++++.+.|++++..+.                     +.++++++.++.......+.+.|...   |
T Consensus       299 ~~~~~~~~~l~~~~~~l~~~L~~~g~~v~---------------------~~~~i~~l~~~~~~~~~~~~~~L~~~---G  354 (407)
T PRK07179        299 ESADDRRARLHANARFLREGLSELGYNIR---------------------SESQIIALETGSERNTEVLRDALEER---N  354 (407)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHcCCCCC---------------------CCCCEEEEEeCCHHHHHHHHHHHHHC---C
Confidence            33445667788899999999988765432                     13458888887544456677777642   3


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~  447 (450)
                       +.++      ....|..              ....+.||||++ ...+++.++.+.++|.++.++.+
T Consensus       355 -I~~~------~~~~p~~--------------~~~~~~lRis~~-~~~t~edi~~~~~~l~~~~~~~~  400 (407)
T PRK07179        355 -VFGA------VFCAPAT--------------PKNRNLIRLSLN-ADLTASDLDRVLEVCREARDEVD  400 (407)
T ss_pred             -ceEe------eecCCCC--------------CCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHhhC
Confidence             2211      1111111              012478999999 88888889999888888766555

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=5.9e-27  Score=232.49  Aligned_cols=243  Identities=14%  Similarity=0.175  Sum_probs=183.0

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +..+....+|+.+|++++.  +++++|+|   +++++.+++.+++++||+|+++.|.|..+...+.     ..|.++..+
T Consensus        56 y~~~~~~~lr~~ia~~~~~~~~~i~it~G---~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~v  127 (351)
T PRK14807         56 YPDPTAEKLREELARYCSVVPTNIFVGNG---SDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSK-----IAGAVEIPV  127 (351)
T ss_pred             CCCccHHHHHHHHHHHhCCCcccEEEecC---HHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEe
Confidence            3345568899999999985  56899999   9999999999999999999999999998776654     257777777


Q ss_pred             CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-c---c-CCCCeEE
Q 013079          174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-P---A-RLGADVV  243 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-~---~-~~g~di~  243 (450)
                      +.+     |++++++++...++++|++++|+||||.+.+.+++.++|++++.++|+|++|..+... .   . ..+..++
T Consensus       128 ~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~  207 (351)
T PRK14807        128 KLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIV  207 (351)
T ss_pred             ecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEE
Confidence            653     7899999883348999999999999999999999999999988899999999544311 1   1 2256899


Q ss_pred             EeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          244 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       244 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      ++|+||.+|.+|+|+ ||+++++++++.+......   ...+.+.+.++..++.. .++.+..+.+.++++.+.+.|++.
T Consensus       208 ~~S~SK~~~~~GlRi-G~~v~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~r~~l~~~l~~~  282 (351)
T PRK14807        208 LRTLSKAFGLAGLRV-GYAVANENILKYLNLVKSP---YNINSLSQVIALKVLRT-GVLKERVNYILNERERLIKELSKI  282 (351)
T ss_pred             EecchHhcccchhce-eeeecCHHHHHHHHHccCC---CCcCHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999 9999999999888765431   12233444444444432 345556666778888899999775


Q ss_pred             C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          324 G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       324 ~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      + ..+ .|.                   .|+++++.+++.   ..+.+.|..
T Consensus       283 ~g~~~-~~~-------------------~~~~~~i~~~~~---~~~~~~l~~  311 (351)
T PRK14807        283 PGIKV-YPS-------------------KTNFILVKFKDA---DYVYQGLLE  311 (351)
T ss_pred             CCcEE-CcC-------------------CccEEEEEcCCH---HHHHHHHHH
Confidence            3 333 232                   356888888753   455555553

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.96  E-value=1.2e-26  Score=233.98  Aligned_cols=316  Identities=13%  Similarity=0.152  Sum_probs=219.5

Q ss_pred             HHHHHHhhcCC-CCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCc
Q 013079           73 PETMRRMFAGE-LGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY  151 (450)
Q Consensus        73 ~~~~~~~~~~~-~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y  151 (450)
                      .+++.+.++.. ++++++.|..|.  .+...++|+.||+++|.+.+++++|   |++|++.++.+++++||+|++++++|
T Consensus        58 ~~~~~~~~~~~~~~~~~s~~~~G~--~~~~~~le~~ia~~~g~~~~ii~~~---~~~a~~~~~~~l~~~gd~vi~~~~~~  132 (393)
T TIGR01822        58 IQAAKDALDEHGFGMSSVRFICGT--QDIHKELEAKIAAFLGTEDTILYAS---CFDANGGLFETLLGAEDAIISDALNH  132 (393)
T ss_pred             HHHHHHHHHHhCCCCCCcCcccCC--hHHHHHHHHHHHHHhCCCcEEEECc---hHHHHHHHHHHhCCCCCEEEEecccc
Confidence            36666666552 566666666554  6778999999999999999999999   99999999999999999999999999


Q ss_pred             hhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhc---C--CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeC
Q 013079          152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---G--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN  226 (450)
Q Consensus       152 ~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~---~--~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~  226 (450)
                      +++...+. .    .+.....+...|++++++++.+   .  ++++|++++++||||.+.|+++|+++|+++|+++|+|+
T Consensus       133 ~s~~~~~~-~----~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De  207 (393)
T TIGR01822       133 ASIIDGVR-L----CKAKRYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDE  207 (393)
T ss_pred             HHHHHHHH-h----cCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEEC
Confidence            99887763 2    2333333445689999988832   2  78899999999999999999999999999999999999


Q ss_pred             CC-CCC-CCC------ccC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH--HHHH
Q 013079          227 TF-SPL-VLS------PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK--VAFE  294 (450)
Q Consensus       227 ~~-~~~-~~~------~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~--~a~~  294 (450)
                      +| .++ ...      ...  .++|+++.|+||++++  +++ ||+++++++++.+....... ...++.+...  ++..
T Consensus       208 ~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g--~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~  283 (393)
T TIGR01822       208 CHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGG--ASG-GFTTARKEVVELLRQRSRPY-LFSNSLPPAVVGASIK  283 (393)
T ss_pred             CccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC--CCc-EEEEeCHHHHHHHHHhCccc-eecCCCCHHHHHHHHH
Confidence            98 222 111      111  2579999999999874  455 99999999988876543211 1222222221  1222


Q ss_pred             HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          295 LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       295 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ++...+......+++.++++++.+.|++.+..+..+                    .++++.+.+++......|.+.|..
T Consensus       284 al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~~~~~~i~~~~~~~~~~l~~~L~~  343 (393)
T TIGR01822       284 VLEMLEASNELRDRLWANTRYFRERMEAAGFDIKPA--------------------DHPIIPVMLYDAVLAQRFARRLLE  343 (393)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCCCCCC--------------------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            222223334455677888899999998766543211                    234677777654456778877764


Q ss_pred             cccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013079          375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~  447 (450)
                      .   | +.++ |...     +..              .-....||||++ ..++++.++.+.++|.++.+..+
T Consensus       344 ~---g-I~v~-~~~~-----~~~--------------~~~~~~iRis~~-~~~t~edi~~~~~~l~~~~~~~~  391 (393)
T TIGR01822       344 E---G-IYVT-GFFY-----PVV--------------PKGQARIRVQIS-AAHTEEQLDRAVEAFTRIGRELG  391 (393)
T ss_pred             C---C-eeEe-eeCC-----CCC--------------CCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence            2   3 4544 3211     100              001246999999 88888888888888887755443

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.96  E-value=6.5e-27  Score=235.05  Aligned_cols=257  Identities=17%  Similarity=0.205  Sum_probs=194.1

Q ss_pred             cccccCccccCCHHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc
Q 013079           61 SIEASATFTVMEPETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS  139 (450)
Q Consensus        61 pi~~att~~~~~~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~  139 (450)
                      ||.+-........+++.+++. .++||++ .|.+++...+.++++++.+|+++|.+++++|+|   +++|+.+++.++++
T Consensus        25 ~~~~~~p~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g---~t~a~~~al~~l~~  100 (387)
T PRK09331         25 PIQRGGILTPEARKALIEYGD-GYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHG---AREGKFAVMHSLCK  100 (387)
T ss_pred             hhhcCCCCCHHHHHHHHHHHh-ccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHhcC
Confidence            555544444334688888884 5578877 788888888999999999999999999999999   99999999999999


Q ss_pred             CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-------CCHHHHHHhhhc------CCceEEEEecCCCCccccc
Q 013079          140 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNSAIVQ------GRTKVLYFESISNPTLAVA  206 (450)
Q Consensus       140 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-------~d~~~l~~ai~~------~~t~lv~i~~~~NptG~v~  206 (450)
                      +||+|+++.++|.+....+.     ..|.++.+++.       .|++++++++.+      +++++|++++|+|++|.+.
T Consensus       101 ~gd~Vlv~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~  175 (387)
T PRK09331        101 KGDYVVLDGLAHYTSYVAAE-----RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA  175 (387)
T ss_pred             CCCEEEECCCchHHHHHHHH-----HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc
Confidence            99999999999998876653     36888888876       279999998832      3789999999999999999


Q ss_pred             CHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh----
Q 013079          207 NIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL----  280 (450)
Q Consensus       207 ~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~----  280 (450)
                      |+++|+++|+++|+++|+|++|  +.+.++...+++|+++.|+||++++++ ++ |+++.++++++.+........    
T Consensus       176 ~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~-~~-G~l~~~~~~i~~~~~~~~~~~~~~~  253 (387)
T PRK09331        176 DAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASA-PS-GVLATTEEYADKVFRTSRKFGVKEV  253 (387)
T ss_pred             cHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCC-CE-EEEEECHHHHhhcccccCCCcccce
Confidence            9999999999999999999999  334566667789999999999998543 45 899999888877654322110    


Q ss_pred             hccCCCch--HHHH-HHHHccCCcHHHHHHHHHHHHHHHHHHHHhC-CCeee
Q 013079          281 MLLGPTMN--PKVA-FELSERIPHLGLRMKEHCHRALIFARRMKKL-GLKVL  328 (450)
Q Consensus       281 ~~~g~~~~--~~~a-~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~  328 (450)
                      ...+.+..  +..+ ...+........+.+++.++++++.+.|+++ ++++.
T Consensus       254 ~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~~~  305 (387)
T PRK09331        254 ELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKIEGFKQL  305 (387)
T ss_pred             eeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            01222221  1111 1111111122234455677788899999998 56654

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=6.2e-27  Score=233.30  Aligned_cols=287  Identities=21%  Similarity=0.237  Sum_probs=204.0

Q ss_pred             ccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           93 YSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ..+++.+...+|++.||++++.  +++++|+|   +++++.+++.+++.+| |.|+++.|.|..+...++     ..|.+
T Consensus        53 ~~~Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G---~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~-----~~g~~  124 (364)
T PRK04781         53 TRRYPDPQPPGLRSALAALYGCAPEQLLIGRG---SDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCAR-----LQNAP  124 (364)
T ss_pred             hccCCCCCHHHHHHHHHHHhCcChHHEEEeCC---HHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-----HcCCE
Confidence            3455556678999999999986  45899999   9999999999998888 799999999987776554     25777


Q ss_pred             EEEeCCC--------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc----
Q 013079          170 TTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP----  235 (450)
Q Consensus       170 v~~v~~~--------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~----  235 (450)
                      +..++.+        |++++.+++..+++++|++++||||||.+.+.+++.++++.  +++++|+||+|..+...+    
T Consensus       125 ~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~  204 (364)
T PRK04781        125 LVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVG  204 (364)
T ss_pred             EEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHH
Confidence            7777641        56776554436789999999999999999998888877764  478999999996664322    


Q ss_pred             --cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC--CcHHHHHHHHHH
Q 013079          236 --ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCH  311 (450)
Q Consensus       236 --~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~~~~  311 (450)
                        ...+..++++|+||.+|.+|+|+ ||+++++++++.+...+..   ...+.+.+..+..++...  ....+.++++.+
T Consensus       205 ~~~~~~~vi~~~SfSK~~gl~GlRv-Gy~v~~~~l~~~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  280 (364)
T PRK04781        205 LLARYDNLAVLRTLSKAHALAAARI-GSLIANAELIAVLRRCQAP---YPVPTPCAALAEQALSAPALAVTARRVAEVRA  280 (364)
T ss_pred             HHhhCCCEEEEecChhhccccccee-eeeeCCHHHHHHHHhccCC---CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence              12256799999999999999999 9999999999988876541   222334444443344332  234455667788


Q ss_pred             HHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccc
Q 013079          312 RALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       312 ~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      +++.+.+.|++++. ....|.                   .|.++++++++.   ..+.+.+...   | +.+..|... 
T Consensus       281 ~r~~l~~~L~~~~~~~~~~p~-------------------~g~f~~~~~~~~---~~~~~~l~~~---g-I~v~~~~~~-  333 (364)
T PRK04781        281 ERERLHAALAQLPGVRRVYPS-------------------QGNFLLVRFDDA---EAAFQALLAA---G-VVVRDQRAA-  333 (364)
T ss_pred             HHHHHHHHHHhCCCCCeECCC-------------------CCcEEEEEcCCH---HHHHHHHHHC---C-eEEeeCCCC-
Confidence            89999999988743 223343                   467899998743   4556666542   2 454444210 


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                                          .+. +++||||+| .   .+..+.|.++|++++
T Consensus       334 --------------------~~~-~~~~Ris~~-~---~~~~~~l~~al~~~~  361 (364)
T PRK04781        334 --------------------PRL-SDALRITLG-T---PEQNDRVLAALQRTQ  361 (364)
T ss_pred             --------------------CCC-CCeEEEeCC-C---HHHHHHHHHHHHHHH
Confidence                                011 478999999 4   334455666665543

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.96  E-value=7.9e-27  Score=231.51  Aligned_cols=244  Identities=19%  Similarity=0.195  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCC---CEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      ...||+.+++++    |    .+ ++++|+|   +++|+..++..++++|   |+|+++.|+|+.+...+.     ..|.
T Consensus        38 ~~~lr~aia~~~~~~~g~~~~~~~~Iiit~G---s~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~-----~~g~  109 (350)
T TIGR03537        38 TKALREAISGWFERRFGVKLDPDAQVLPSAG---SKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGAL-----FAGG  109 (350)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCC---hHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHH-----hcCC
Confidence            455666666664    4    34 7899999   9999999999998887   699999999999988875     3678


Q ss_pred             eEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--c-
Q 013079          169 TTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P-  235 (450)
Q Consensus       169 ~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~--~-  235 (450)
                      ++..++.+       |++++++++ +++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+.  + 
T Consensus       110 ~~~~v~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~  188 (350)
T TIGR03537       110 EPTAVKLKKEDGFLLRLEKVEKSI-LEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPH  188 (350)
T ss_pred             EEEEcccCcccCCccCHHHHHHhh-hhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCC
Confidence            88777653       788999988 778999999999999999988   889999999999999999999554321  1 


Q ss_pred             --c--CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079          236 --A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       236 --~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                        .  ..+..+++.|+||.+|++|+|+ ||+++++++.+.+...+.... ...+...+.++...+....++.++.+++.+
T Consensus       189 ~~~~~~~~~~i~~~s~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~  266 (350)
T TIGR03537       189 SALEVGIENVLAFHSLSKRSGMTGYRS-GFVAGDEKLISFLRKLRANFG-VASPDFVQAAAKAAWSDDNHVLERRKIFKR  266 (350)
T ss_pred             chhhcCcCCEEEEeecccccCCccccc-eeeecCHHHHHHHHHHHHhhc-cCCCHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence              1  1245699999999999999998 999999999988887654221 111112333333333333445556666788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      +++.+.+.|++++..+..|.                   .|.++++.++.......+.+.|..
T Consensus       267 ~~~~~~~~l~~~g~~~~~~~-------------------g~~~~~~~~~~~~~~~~l~~~L~~  310 (350)
T TIGR03537       267 KRDLFIEFFNKVGLEYLYPD-------------------ATFYLWVKVPSGIDAKDYALRLLE  310 (350)
T ss_pred             HHHHHHHHHHHCCCcccCCC-------------------eEEEEEEECCCCCCHHHHHHHHHH
Confidence            88889999988765443332                   355788998743235677777754

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.96  E-value=6.6e-27  Score=238.46  Aligned_cols=249  Identities=17%  Similarity=0.150  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHhC-----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079          102 LNLSRQMAALEG-----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus       102 ~~l~~~iA~l~g-----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+++.++++++     .+++++|+|   +++++.+++.+++++||.|++++|+|+.+...++     ..|.++..++.+
T Consensus       124 ~~lr~~ia~~~~~~~~~~~~Iiit~G---~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~  195 (431)
T PRK15481        124 PELHAWAARWLRDDCPVAFEIDLTSG---AIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLR-----YAGFSASPVSVD  195 (431)
T ss_pred             HHHHHHHHHHHhhccCCcCeEEEecC---cHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCeEEeeccC
Confidence            457777777754     247899999   9999999999999999999999999999988876     367777777654


Q ss_pred             ----CHHHHHHhhhcCCceEEEEe-cCCCCcccccCHH---HHHHHHHhc-CCEEEEeCCCCCCCCC----cc--CCCCe
Q 013079          177 ----DHEMVNSAIVQGRTKVLYFE-SISNPTLAVANIP---ELSRLAHDK-GVTVVVDNTFSPLVLS----PA--RLGAD  241 (450)
Q Consensus       177 ----d~~~l~~ai~~~~t~lv~i~-~~~NptG~v~~l~---~I~~la~~~-gi~livD~~~~~~~~~----~~--~~g~d  241 (450)
                          |+++|++++ +.++++++++ +||||||.+.+.+   +|.++|+++ ++++|+|++|..+..+    +.  .....
T Consensus       196 ~~g~~~~~l~~~~-~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~v  274 (431)
T PRK15481        196 AEGMQPEKLERAL-AQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRW  274 (431)
T ss_pred             CCCCCHHHHHHHH-hcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCE
Confidence                789999988 6789998887 9999999998865   999999999 9999999999655321    11  12467


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC---cHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFAR  318 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~~~~~~~l~~  318 (450)
                      ++++|+||.++ +|+|+ ||+++++++++.+....... ....+.+.+.++..++....   ++.+..+.+.++++.+.+
T Consensus       275 i~~~SfSK~~~-~GlRi-G~~i~~~~~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~  351 (431)
T PRK15481        275 ALIRSVSKALG-PDLRL-AFVASDSATSARLRLRLNSG-TQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLAR  351 (431)
T ss_pred             EEEeeeccccC-CCcee-EEEeCCHHHHHHHHHHHhcc-ccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 89999 99999999988886544411 12234445555555554332   244556667889999999


Q ss_pred             HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccc
Q 013079          319 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       319 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      .|++++..+..|.                   .|.++|+.++..  ...+.+.+...   | +.+..|+
T Consensus       352 ~L~~~~~~~~~p~-------------------gg~f~~~~l~~~--~~~~~~~l~~~---g-V~v~pg~  395 (431)
T PRK15481        352 ALQQYGIAIPSPG-------------------DGLNLWLPLDTD--SQATALTLAKS---G-WLVREGE  395 (431)
T ss_pred             HHHHcCCccccCC-------------------CeEEEEEECCCC--HHHHHHHHHHC---C-cEEecCC
Confidence            9998765443343                   577999999742  34566666532   3 5555553

>PRK14012 cysteine desulfurase; Provisional

Probab=99.96  E-value=8.4e-28  Score=243.06  Aligned_cols=339  Identities=16%  Similarity=0.147  Sum_probs=220.2

Q ss_pred             ccCccccCC-HHHHHHhhc--CCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCCe--EEEecChHHHHHHHHHHHHHh
Q 013079           64 ASATFTVME-PETMRRMFA--GELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTEA--AYCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~--~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~~--~~~tsg~~~gt~ai~~al~~l  137 (450)
                      +++++..++ .+++.+++.  ..++||.+ .+..+....+.++++|+.+|+++|++.  +++|+|   ||+|+++++.++
T Consensus        10 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g---~t~al~~~l~~l   86 (404)
T PRK14012         10 SATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSG---ATESDNLAIKGA   86 (404)
T ss_pred             cCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCC---HHHHHHHHHHHH
Confidence            345554444 477777776  66787754 333333335678999999999999754  899999   999999998776


Q ss_pred             c----cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCH
Q 013079          138 C----SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANI  208 (450)
Q Consensus       138 ~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l  208 (450)
                      .    ++||+|++++++|+++...+..+ .+ .|+++.+++.+     |+++|++++ ++++++|++++++||||.+.|+
T Consensus        87 ~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-~~-~g~~~~~v~~~~~g~~d~~~l~~~i-~~~t~lv~~~~~~n~tG~~~~~  163 (404)
T PRK14012         87 AHFYQKKGKHIITSKTEHKAVLDTCRQL-ER-EGFEVTYLDPQSNGIIDLEKLEAAM-RDDTILVSIMHVNNEIGVIQDI  163 (404)
T ss_pred             HHhhcCCCCEEEEecCccHHHHHHHHHH-Hh-CCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEEECcCCCccchhhH
Confidence            4    68999999999999887776433 22 58888888764     899999999 8899999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh----hc
Q 013079          209 PELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL----ML  282 (450)
Q Consensus       209 ~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~----~~  282 (450)
                      ++|.++|+++|+++|+|+++  +...++....++|+++.|+||.+|++|  + |+++.+++...++.....+..    ..
T Consensus       164 ~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g--~-G~l~~~~~~~~~~~~~~~g~~~~~~~~  240 (404)
T PRK14012        164 AAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKG--I-GALYVRRKPRVRLEAQMHGGGHERGMR  240 (404)
T ss_pred             HHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCc--e-EEEEEecCCCCCCCceecCCCccCCcc
Confidence            99999999999999999998  444455556689999999999988655  5 655544432222211100000    01


Q ss_pred             cCCCc-hHHHHH-HHHc-cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          283 LGPTM-NPKVAF-ELSE-RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       283 ~g~~~-~~~~a~-~~~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      .|... ....+. .++. .........++..++++++.+.|++++. .+..+.....|              ....++|.
T Consensus       241 ~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~--------------~~~~~~~~  306 (404)
T PRK14012        241 SGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVP--------------GNLNVSFN  306 (404)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCC--------------CEEEEEEe
Confidence            12111 111111 1111 1122344556667788888888877653 32211100000              11245555


Q ss_pred             eCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCC----CCCeEEEEeCCCCCHHHHHHH
Q 013079          359 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI----SAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       359 l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~----~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +...   ..++..|+.      +.++.|..|......+.        .....+++    ..+.||||++ ..+++++++.
T Consensus       307 ~~~~---~~~~~~l~~------~~i~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~iRls~~-~~~t~~dvd~  368 (404)
T PRK14012        307 YVEG---ESLIMALKD------LAVSSGSACTSASLEPS--------YVLRALGLNDELAHSSIRFSLG-RFTTEEEIDY  368 (404)
T ss_pred             CcCH---HHHHHhCCC------eEEEchhhhCCCCCCCC--------HHHHHcCCChhhcCceEEEEec-CCCCHHHHHH
Confidence            5432   345566653      67787766543211111        11122343    2578999999 8788888888


Q ss_pred             HHHHHHHhh
Q 013079          435 FEKALSRMQ  443 (450)
Q Consensus       435 l~~al~~~~  443 (450)
                      +.++|+++.
T Consensus       369 ~~~~l~~~~  377 (404)
T PRK14012        369 AIELVRKSI  377 (404)
T ss_pred             HHHHHHHHH
Confidence            877776653

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.96  E-value=9.1e-27  Score=232.65  Aligned_cols=263  Identities=15%  Similarity=0.177  Sum_probs=182.2

Q ss_pred             Cccc-ccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHH
Q 013079           56 GGVN-MSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVL  134 (450)
Q Consensus        56 ~~~~-~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al  134 (450)
                      |+++ .|+..+-+......+++.++-.+.-+.+...........+...++++.+|+++|.+.+++++|   |++++..++
T Consensus         7 ~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g---~~~a~~~~~   83 (370)
T TIGR02539         7 GSINLNPLQRGGVLTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHG---AREGKFAVM   83 (370)
T ss_pred             cccccChhhhCCCCcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECC---hHHHHHHHH
Confidence            4455 366666655544456666654432111111112223335678899999999999999999999   999999999


Q ss_pred             HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhc------CCceEEEEecCCCC
Q 013079          135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ------GRTKVLYFESISNP  201 (450)
Q Consensus       135 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~------~~t~lv~i~~~~Np  201 (450)
                      .+++++||+|+++.+.|.+....+.     ..|.++..++.+       |+++|++++..      +++++|++++|+||
T Consensus        84 ~~l~~~gd~Vl~~~~~h~s~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~  158 (370)
T TIGR02539        84 HALCKEGDWVVLDGLAHYTSYVAAE-----RAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGE  158 (370)
T ss_pred             HHhhCCCCEEEECCcccHHHHHHHH-----HcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCC
Confidence            9999999999999999877765543     368888888764       89999998832      36889999999999


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEeCCCCC--CCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh
Q 013079          202 TLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA  279 (450)
Q Consensus       202 tG~v~~l~~I~~la~~~gi~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~  279 (450)
                      +|.+.|+++|.++|+++|+++|+|++|..  +..+....++|++++|+||++++ +.++ |++++++++++.+......+
T Consensus       159 ~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~-~g~~-G~l~~~~~~i~~l~~~~~~~  236 (370)
T TIGR02539       159 YGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAA-SGPC-GVLGMSEEWEDIVLRKSRYS  236 (370)
T ss_pred             CccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccC-CCCE-EEEEECHHHHhhhcccccCC
Confidence            99999999999999999999999999932  33344455789999999999995 4566 99999999998886654321


Q ss_pred             hh----ccCCCc---hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013079          280 LM----LLGPTM---NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL  328 (450)
Q Consensus       280 ~~----~~g~~~---~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~  328 (450)
                      ..    ..+.+.   ....+..++........+..+..++++++.+.|+++++.+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~~~  292 (370)
T TIGR02539       237 PVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDIGFIQL  292 (370)
T ss_pred             ccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence            10    111111   22222222211111112233344455689999999887653

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.96  E-value=1e-27  Score=238.25  Aligned_cols=320  Identities=16%  Similarity=0.142  Sum_probs=223.2

Q ss_pred             ccCccccCCH-HHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhcc
Q 013079           64 ASATFTVMEP-ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCS  139 (450)
Q Consensus        64 ~att~~~~~~-~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~  139 (450)
                      ++++++.+.+ +++.+++...++||.+ .+.+++......+++++.+|+++|.+  .++||+|   +++++++++.++..
T Consensus         5 a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g---~t~a~~~~l~~l~~   81 (353)
T TIGR03235         5 NATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSG---ATESNNLAILGLAR   81 (353)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCC---HHHHHHHHHHHHHH
Confidence            4555655554 7787777666788765 45666555567899999999999964  6899999   99999999988753


Q ss_pred             ----CC-CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHH
Q 013079          140 ----SG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP  209 (450)
Q Consensus       140 ----~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~  209 (450)
                          +| ++|+++..+|+++...+... .. .|+++++++.+     |++++++++ ++++++|++++++||||.+.|++
T Consensus        82 ~~~~~g~~~vi~~~~~~~s~~~~~~~~-~~-~G~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~~~~~~n~tG~~~~~~  158 (353)
T TIGR03235        82 AGEQKGKKHIITSAIEHPAVLEPIRAL-ER-NGFTVTYLPVDESGRIDVDELADAI-RPDTLLVSIMHVNNETGSIQPIR  158 (353)
T ss_pred             hcccCCCCeeeEcccccHHHHHHHHHH-Hh-cCCEEEEEccCCCCcCCHHHHHHhC-CCCCEEEEEEcccCCceeccCHH
Confidence                55 78999999999887776433 33 58888888754     889999999 78899999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHH--HHHHhh--hh--hh
Q 013079          210 ELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS--MMDLHQ--GA--LM  281 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~--l~~~~~--~~--~~  281 (450)
                      +|.++|+++|+++|+|+++  +...++....++|+++.|+||++|++|  + |+++.+++....  +.....  +.  ..
T Consensus       159 ~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g--~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~  235 (353)
T TIGR03235       159 EIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKG--I-GALVIRKRGKPKAPLKPIMFGGGQERGL  235 (353)
T ss_pred             HHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCc--e-EEEEEccCcccccccCceeeCCCCcCcc
Confidence            9999999999999999997  555566666789999999999998777  4 777666553221  111000  00  00


Q ss_pred             ccCCC-chH-HHHHHHHc-cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          282 LLGPT-MNP-KVAFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       282 ~~g~~-~~~-~~a~~~~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      ..|.. ... .+...++. .....+.+.+++.++++++.+.|++.++++..+.-.                ...++++|.
T Consensus       236 ~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~----------------~~~~i~~~~  299 (353)
T TIGR03235       236 RPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAE----------------TIPHILNFS  299 (353)
T ss_pred             ccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCccc----------------ccCCEEEEE
Confidence            11211 111 11111111 112345566778888899999998766665433211                134588888


Q ss_pred             eCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCC----CeEEEEe
Q 013079          359 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSV  422 (450)
Q Consensus       359 l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~----~~iRiS~  422 (450)
                      +++.+ .+.+...|.. +    ++++.|..|+....        .+...+.++|+++    +.||||+
T Consensus       300 ~~~~~-~~~v~~~L~~-~----i~v~~g~~~~~~~~--------~~~~~l~~~g~~~~~~~~~~r~s~  353 (353)
T TIGR03235       300 IDGVN-SEALIVNLRA-D----AAVSTGSACSSSKY--------EPSHVLQAMGLDTDRARGAIRFSW  353 (353)
T ss_pred             eCCcC-HHHHHHHHhC-C----eEEEchhhcCCCCC--------CCCHHHHHcCCCHHHhCccEEEeC
Confidence            87543 4566666653 2    78888877643221        1235677788864    7899986

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PRK08912 hypothetical protein; Provisional

Probab=99.96  E-value=5.1e-27  Score=236.07  Aligned_cols=242  Identities=19%  Similarity=0.217  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++|+.+|+++    |    ++ ++++|+|   +++|+.+++..++++||+|+++.|.|+.+...+.     ..|.++.
T Consensus        65 ~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G---~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~  136 (387)
T PRK08912         65 LPELRQAVAAHYARFQGLDLDPETEVMVTSG---ATEALAAALLALVEPGDEVVLFQPLYDAYLPLIR-----RAGGVPR  136 (387)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCcccEEEeCC---cHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEE
Confidence            456777777654    3    34 7899999   9999999999999999999999999999887775     3677777


Q ss_pred             EeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------c
Q 013079          172 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A  236 (450)
Q Consensus       172 ~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~  236 (450)
                      +++.+      |++++++++ .+++++|++++||||||.+.+   +++|.++|+++++++|+|++|..+.++.      .
T Consensus       137 ~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  215 (387)
T PRK08912        137 LVRLEPPHWRLPRAALAAAF-SPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLM  215 (387)
T ss_pred             EEecCcccCcCCHHHHHHHh-CccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChh
Confidence            66543      689999988 778999999999999999986   6679999999999999999985443221      1


Q ss_pred             C----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHH
Q 013079          237 R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH  311 (450)
Q Consensus       237 ~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~  311 (450)
                      .    .+.+++++|+||.+|.+|+|+ ||+++++++++.+....... ....+...+.++...+.. .+++.+..+++.+
T Consensus       216 ~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  293 (387)
T PRK08912        216 TLPGMRERTVKIGSAGKIFSLTGWKV-GFVCAAPPLLRVLAKAHQFL-TFTTPPNLQAAVAYGLGKPDDYFEGMRADLAR  293 (387)
T ss_pred             hCCCccCceEEEeechhhccCcCcee-EEEecCHHHHHHHHHHHhhc-cccCChHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            1    146899999999999999998 99999999988886654411 112222233333333322 2344555566788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHh
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYL  372 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~~~~~l  372 (450)
                      +++.+.+.|++++..+..|.                   .|.++|+.++.   ......|.+.+
T Consensus       294 ~~~~l~~~L~~~g~~~~~~~-------------------g~~~l~~~l~~~~~~~~~~~~~~~l  338 (387)
T PRK08912        294 SRDRLAAGLRRIGFPVLPSQ-------------------GTYFLTVDLAPLGLAEDDVAFCRRL  338 (387)
T ss_pred             HHHHHHHHHHhCCCcccCCC-------------------cceEEEecccccCCCCCHHHHHHHH
Confidence            89999999998765543221                   45678888863   12345666665

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=3.6e-27  Score=235.51  Aligned_cols=279  Identities=16%  Similarity=0.205  Sum_probs=202.3

Q ss_pred             hHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-
Q 013079          100 TVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-  176 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-  176 (450)
                      ...++++.+|++++.  +.+++|+|   +++++++++.+++++||+|+++.|.|..+...+.     ..|.++..++.+ 
T Consensus        68 ~~~~lr~~ia~~~~~~~~~i~~t~G---~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~~  139 (367)
T PRK02731         68 SGFELKAALAEKFGVDPERIILGNG---SDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQ-----AVGAKPVEVPAKD  139 (367)
T ss_pred             cHHHHHHHHHHHhCcCHHHEEEcCC---HHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHH-----HcCCeEEEecccC
Confidence            346899999999986  46899999   9999999999889999999999999987766553     267888877653 


Q ss_pred             ---CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCCCCCCC-----cc----CCCCeE
Q 013079          177 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLS-----PA----RLGADV  242 (450)
Q Consensus       177 ---d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~~-----~~----~~g~di  242 (450)
                         |++++++++ ++++++|++++|+||||.+.+.++|.++++..  |+++|+|++|..+...     ..    .....+
T Consensus       140 ~~~~~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i  218 (367)
T PRK02731        140 YGHDLDAMLAAV-TPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVV  218 (367)
T ss_pred             CCCCHHHHHHHh-CCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEE
Confidence               889999998 78899999999999999999999999999874  8999999998433221     11    114578


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      +++|+||.+|.+|+|+ ||+++++++++.+......   ...+.+.+.++...+....++.+..+.+.++++.+.+.|++
T Consensus       219 ~~~S~SK~~g~~G~Ri-G~l~~~~~~~~~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  294 (367)
T PRK02731        219 VTRTFSKAYGLAGLRV-GYGIAPPEIIDALNRVRQP---FNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAE  294 (367)
T ss_pred             EEeeehHhhcCcccce-eeeeCCHHHHHHHHHccCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998 9999999998888765441   22333444444444433333444455567788889999988


Q ss_pred             CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCC
Q 013079          323 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE  402 (450)
Q Consensus       323 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~  402 (450)
                      ++..+. |.                   .|+++++.++.......|.+.|..   .| +.+..|..              
T Consensus       295 ~g~~~~-~~-------------------~g~~~~i~~~~~~~~~~~~~~L~~---~g-I~v~~~~~--------------  336 (367)
T PRK02731        295 LGLEYI-PS-------------------VGNFILVDFDDGKDAAEAYQALLK---RG-VIVRPVAG--------------  336 (367)
T ss_pred             CCCccC-CC-------------------CceEEEEECCCCCCHHHHHHHHHH---CC-EEEEeCCC--------------
Confidence            765432 22                   367899999643345677777764   23 45544321              


Q ss_pred             CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          403 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       403 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                              .+ .+++||||++ .   .+.++.+.++|.++
T Consensus       337 --------~~-~~~~iRis~~-~---~~e~~~l~~aL~~~  363 (367)
T PRK02731        337 --------YG-LPNALRITIG-T---EEENRRFLAALKEF  363 (367)
T ss_pred             --------CC-CCCeEEEecC-C---HHHHHHHHHHHHHH
Confidence                    11 1468999999 3   23445555555544

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.2e-26  Score=233.99  Aligned_cols=283  Identities=17%  Similarity=0.175  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..+||+.+|+++    |    .+ .+++|+|   +++|+..++.+++++||+|++++|+|+.+...+.     ..|.++.
T Consensus        75 ~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G---~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~  146 (394)
T PRK05942         75 TASFRQAITDWYHRRYGVELDPDSEALPLLG---SKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPL-----IAGAQIY  146 (394)
T ss_pred             CHHHHHHHHHHHHHHHCCCcCCCCeEEEccC---hHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCEEE
Confidence            456777777765    3    34 3788999   9999999999999999999999999999877664     2577777


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------  235 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------  235 (450)
                      .++.+       |++++++++ .+++++|++++||||||.+.+   +++|.++|+++|+++|+|++|..+.++.      
T Consensus       147 ~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~  225 (394)
T PRK05942        147 PIILKPENDWLIDLSSIPEEV-AQQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSL  225 (394)
T ss_pred             EeecCCccCCccCHHHHHHhc-cccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCCh
Confidence            76542       688998888 789999999999999999987   7789999999999999999985443321      


Q ss_pred             cCC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHHH
Q 013079          236 ARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHC  310 (450)
Q Consensus       236 ~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~  310 (450)
                      ..+    +.+++++|+||.+|.+|+|+ ||++.++++++.+....... ....+.+.+.++..++... +++.+..+++.
T Consensus       226 ~~~~~~~~~~i~~~SfSK~~~~~GlRi-G~i~~~~~l~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  303 (394)
T PRK05942        226 LEIPGAKDIGVEFHTLSKTYNMAGWRV-GFVVGNRHIIQGLRTLKTNL-DYGIFSALQKAAETALQLPDSYLQQVQERYR  303 (394)
T ss_pred             hhCCCccccEEEEecchhccCChhhhe-eeeecCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            111    34688999999999999998 99999999999887665411 1222334444444444332 23444555678


Q ss_pred             HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH-hhcccccccccccccccc
Q 013079          311 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY-LQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~-l~~~~~~g~i~vs~G~~~  389 (450)
                      ++++.+.+.|++.+..+..|.                   .|.++|+.++......++... +..   .| +.+..|+..
T Consensus       304 ~~~~~~~~~L~~~~~~~~~~~-------------------~~~f~~~~~~~~~~~~~~~~~~l~~---~g-V~v~~g~~f  360 (394)
T PRK05942        304 TRRDFLIQGLGELGWNIPPTK-------------------ATMYLWVPCPVGMGSTDFALNVLQK---TG-VVVTPGNAF  360 (394)
T ss_pred             HHHHHHHHHHHHCCCeecCCC-------------------eeeEEEEECCCCCCHHHHHHHHHHH---CC-EEEeCChhh
Confidence            888889999988765443222                   345889998732123344443 332   22 444444221


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      .                     ....++||||++ .+ .    +.|.++|+++.+
T Consensus       361 ~---------------------~~~~~~iRis~~-~~-~----~~l~~~l~~l~~  388 (394)
T PRK05942        361 G---------------------EGGEGYVRISLI-AD-C----DRLGEALDRLKQ  388 (394)
T ss_pred             C---------------------cCCCCeEEEEec-CC-H----HHHHHHHHHHHH
Confidence            0                     011478999999 53 3    455555555543

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.96  E-value=8.8e-27  Score=235.43  Aligned_cols=231  Identities=16%  Similarity=0.169  Sum_probs=171.0

Q ss_pred             hhHHHHHHHHHHHhC-------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079           99 PTVLNLSRQMAALEG-------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g-------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      +...++++.||++++       .+++++|+|   +++|+.+++.+++++||+|+++.|+|..+...+.     ..|.++.
T Consensus        73 ~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~-----~~g~~v~  144 (401)
T TIGR01264        73 VGALSAREAIASYYHNPDGPIEADDVVLCSG---CSHAIEMCIAALANAGQNILVPRPGFPLYETLAE-----SMGIEVK  144 (401)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCCHHHEEECcC---hHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHH-----HcCCEEE
Confidence            345678888888875       356899999   9999999999999999999999999998887765     3677777


Q ss_pred             EeCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013079          172 FVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------  235 (450)
Q Consensus       172 ~v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------  235 (450)
                      .++.       .|++.+++++ +.++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.      
T Consensus       145 ~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~  223 (401)
T TIGR01264       145 LYNLLPDKSWEIDLKQLESLI-DEKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPL  223 (401)
T ss_pred             EeecCCccCCCCCHHHHHHHh-ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccH
Confidence            7654       2789999888 778999999999999999975   7889999999999999999996654321      


Q ss_pred             cCC---CCeEEEeCCCCccccCccceEEEEEcCH------HHHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHHH
Q 013079          236 ARL---GADVVVHSISKFISGGADIIAGAVCGPA------NLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGL  304 (450)
Q Consensus       236 ~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~  304 (450)
                      ..+   ...++++|+||.++.+|+|+ ||+++++      ++++.+......  ....+.+.+.++..++..  .+++..
T Consensus       224 ~~~~~~~~vi~~~SfSK~~~~~GlRi-G~iv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~l~~  300 (401)
T TIGR01264       224 ASLSSTVPILSCGGLAKRWLVPGWRL-GWIIIHDRRGILRDIRDGLVKLSQR--ILGPCTIVQGALPSILLRTPQEYFDG  300 (401)
T ss_pred             HHcCCCCcEEEEccCcccCCCccceE-EEEEecCcchhHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHHhCcHHHHHH
Confidence            111   23689999999999999999 9998763      334444333220  012244455555444432  244555


Q ss_pred             HHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          305 RMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ..+++.++++.+.+.|++++ ..+..|.                   .|.++|+.++
T Consensus       301 ~~~~~~~~r~~l~~~L~~~~~~~~~~p~-------------------~g~f~~~~~~  338 (401)
T TIGR01264       301 TLSVLESNAMLCYGALAAVPGLRPVMPS-------------------GAMYMMVGIE  338 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCcccCCC-------------------eeeEEEEEec
Confidence            66677888999999998873 2333332                   5778999875

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK07777 aminotransferase; Validated

Probab=99.96  E-value=1.6e-26  Score=232.51  Aligned_cols=254  Identities=21%  Similarity=0.270  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHH----hCC----C-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAAL----EGT----E-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l----~g~----~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++++.++++    +|.    + ++++|+|   +++|+.+++.+++.+||+|++..|.|+.+...+.     ..|.++.
T Consensus        63 ~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G---~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~-----~~g~~~~  134 (387)
T PRK07777         63 IPELRAAIAAQRRRRYGLEYDPDTEVLVTVG---ATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIA-----MAGAHRV  134 (387)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEeCC---cHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HCCCEEE
Confidence            45566666654    453    2 5899999   9999999999999999999999999999887764     2465655


Q ss_pred             EeCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----c
Q 013079          172 FVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P  235 (450)
Q Consensus       172 ~v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~  235 (450)
                      .++.        .|++++++++ ++++++|++++|+||||.+.+   +++|.++|+++++++|+|++|..+.++     +
T Consensus       135 ~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~  213 (387)
T PRK07777        135 PVPLVPDGRGFALDLDALRAAV-TPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLP  213 (387)
T ss_pred             EeecCCccCCCcCCHHHHHHhc-CcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCccc
Confidence            5543        2788999988 778999999999999999965   889999999999999999998554321     1


Q ss_pred             -cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHH
Q 013079          236 -AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEH  309 (450)
Q Consensus       236 -~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~  309 (450)
                       ..    .+.++++.|+||.+|++|+|+ ||+++++++++.+...... .....+.+.+.++..++.. .+++....+.+
T Consensus       214 ~~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~~~~~~l~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  291 (387)
T PRK07777        214 LATLPGMRERTVTISSAAKTFNVTGWKI-GWACGPAPLIAAVRAAKQY-LTYVGGAPFQPAVAHALDHEDAWVAALRDSL  291 (387)
T ss_pred             HhhCCCCcCcEEEEeechhhccCcCcee-EEEecCHHHHHHHHHHHhh-cccCCCCHHHHHHHHHHhCCcHHHHHHHHHH
Confidence             11    247899999999999999999 9999999988888765441 1123444444444444432 34455555667


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      .++++.+.+.|++++.++..|.                   .|.++|+.++.  ......|.+.|..  +.| +.+..|.
T Consensus       292 ~~~~~~l~~~L~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~~~~~~~~~l~~--~~g-v~v~pg~  349 (387)
T PRK07777        292 QAKRDRLAAGLAEAGFEVHDSA-------------------GTYFLCADPRPLGYDDGTEFCRALPE--RVG-VAAIPMS  349 (387)
T ss_pred             HHHHHHHHHHHHhCCCCccCCC-------------------cceEEEecccccCCCCHHHHHHHHHH--hCC-EEEeCch
Confidence            8899999999988765543222                   35578878642  1235667777742  123 5666553

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.96  E-value=1.6e-26  Score=230.30  Aligned_cols=245  Identities=18%  Similarity=0.229  Sum_probs=181.9

Q ss_pred             HHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCc
Q 013079           73 PETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY  151 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y  151 (450)
                      .+.+.++. ..++||++ .+..+...+|..+++++.+|+++|.+++++|+|   +++++.+++.+++++||+|+++.+.|
T Consensus        18 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g---~t~al~~~l~~~~~~gd~Vl~~~~~~   93 (361)
T cd06452          18 RKALIEWG-DGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPG---AREGKFAVMHSLCEKGDWVVVDGLAH   93 (361)
T ss_pred             HHHHHHHh-cccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCC---HHHHHHHHHHHhcCCCCEEEEcCCcc
Confidence            36777776 44688765 566676778899999999999999999999999   99999999999999999999999998


Q ss_pred             hhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhc------CCceEEEEecCCCCcccccCHHHHHHHHHhc
Q 013079          152 GGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ------GRTKVLYFESISNPTLAVANIPELSRLAHDK  218 (450)
Q Consensus       152 ~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~------~~t~lv~i~~~~NptG~v~~l~~I~~la~~~  218 (450)
                      .+....+.     ..|+++.+++.+       |++++++++..      +++++|++++|+||||.+.|+++|.++|+++
T Consensus        94 ~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~  168 (361)
T cd06452          94 YTSYVAAE-----RAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEY  168 (361)
T ss_pred             hHHHHHHH-----hcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHc
Confidence            88765543     368888887642       78899888831      3789999999999999999999999999999


Q ss_pred             CCEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh----hhccCCCchHHHH
Q 013079          219 GVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLLGPTMNPKVA  292 (450)
Q Consensus       219 gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~g~~~~~~~a  292 (450)
                      |+++|+|++|.  .+.++..++++|+++.|+||++++++ ++ |+++.++++++.+...+...    ....+.+.....+
T Consensus       169 ~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~-~~-G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  246 (361)
T cd06452         169 GVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASA-PI-GVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPL  246 (361)
T ss_pred             CCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCC-Ce-EEEEECHHHHHHHhccccccccceeeeeccccCchHH
Confidence            99999999983  33455666789999999999998554 66 99999988888876544311    0011222211111


Q ss_pred             HHHHccCCcHH---HHHHHHHHHHHHHHHHHHhC-CCeee
Q 013079          293 FELSERIPHLG---LRMKEHCHRALIFARRMKKL-GLKVL  328 (450)
Q Consensus       293 ~~~~~~~~~l~---~~~~~~~~~~~~l~~~L~~~-~~~v~  328 (450)
                      ..+...++.+.   .+..+..++++++.+.|+++ ++++.
T Consensus       247 ~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~v~  286 (361)
T cd06452         247 VTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIKQL  286 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            11111222222   23333445567899999988 55654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.96  E-value=1.3e-26  Score=233.00  Aligned_cols=242  Identities=17%  Similarity=0.190  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...+++.+|+++    |    .+ .+++|+|   +++++.+++..++++||+|++++|+|+.+...+.     ..|.++.
T Consensus        71 ~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G---~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~~~  142 (385)
T PRK09276         71 MLEFRKAVADWYKRRFGVELDPETEVISLIG---SKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTI-----FAGGEPY  142 (385)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCcEEEccC---cHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHH-----HcCCEEE
Confidence            456777777765    3    23 3788899   9999999999999999999999999998887764     2577777


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---c---
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---P---  235 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---~---  235 (450)
                      .++.+       |++++++.+ .+++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++   +   
T Consensus       143 ~v~~~~~~g~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~  221 (385)
T PRK09276        143 FMPLKEENGFLPDLDAIPEDV-AKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSF  221 (385)
T ss_pred             EEecCCCCCCcCCHHHHHHhc-cccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCCh
Confidence            66542       678888888 678999999999999999987   578899999999999999999554321   1   


Q ss_pred             cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHH
Q 013079          236 AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHC  310 (450)
Q Consensus       236 ~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~  310 (450)
                      ..    .+.++++.|+||.+|.+|+|+ ||+++++++++.+...+... ....+.+.+.++..++.. ..++....+++.
T Consensus       222 ~~~~~~~~~~i~~~S~SK~~g~~GlRi-G~~i~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  299 (385)
T PRK09276        222 LEVPGAKDVGIEFHSLSKTYNMTGWRI-GFAVGNADLIAGLGKVKSNV-DSGVFQAIQEAGIAALNGPQEVVEELRKIYQ  299 (385)
T ss_pred             hccCCCcCCEEEEecchhhcCCcchhh-eeeeCCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            11    135788999999999999999 99999999998887765411 111222333344344432 233445555678


Q ss_pred             HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013079          311 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL  372 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l  372 (450)
                      ++++.+.+.|++++..+..|.                   .|.++++.++.......+...+
T Consensus       300 ~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~v~~~~~~~~~~l~~~l  342 (385)
T PRK09276        300 ERRDILVEGLRKLGLEVEPPK-------------------ATFYVWAPVPKGYTSAEFATLL  342 (385)
T ss_pred             HHHHHHHHHHHhCCCcccCCC-------------------cceEEEEECCCCCCHHHHHHHH
Confidence            888999999988765443332                   3456899887432345566554

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.96  E-value=7.5e-27  Score=236.58  Aligned_cols=267  Identities=16%  Similarity=0.189  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHhC--------------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCcc
Q 013079          101 VLNLSRQMAALEG--------------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC  166 (450)
Q Consensus       101 ~~~l~~~iA~l~g--------------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~  166 (450)
                      ..+||+.||++++              .+++++|+|   +++++.+++..++.+||+|+++.|+|..+...+.     ..
T Consensus        77 ~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G---~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~  148 (412)
T PTZ00433         77 SPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSG---VSHAILMALTALCDEGDNILVPAPGFPHYETVCK-----AY  148 (412)
T ss_pred             cHHHHHHHHHHHHhhccccccccCCCChhhEEEeCC---hHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHH-----Hc
Confidence            5668888888764              356899999   9999999999999999999999999999887775     36


Q ss_pred             CeeEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013079          167 NITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-  235 (450)
Q Consensus       167 g~~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-  235 (450)
                      |.++.+++.+       |++++++++ ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++. 
T Consensus       149 g~~~~~i~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~  227 (412)
T PTZ00433        149 GIEMRFYNCRPEKDWEADLDEIRRLV-DDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA  227 (412)
T ss_pred             CCEEEEEecCccccCcCCHHHHHHHh-ccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCC
Confidence            7777777642       688999888 778999999999999999865   7788999999999999999996654321 


Q ss_pred             -----cCC---CCeEEEeCCCCccccCccceEEEEEc--C----HHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-C-
Q 013079          236 -----ARL---GADVVVHSISKFISGGADIIAGAVCG--P----ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-I-  299 (450)
Q Consensus       236 -----~~~---g~di~~~S~sK~~g~~g~~igG~l~~--~----~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~-  299 (450)
                           ..+   ...++++|+||.+|.+|+|+ ||++.  +    +++++.+......  ....+.+.+.++..++.. . 
T Consensus       228 ~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRl-G~~i~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~  304 (412)
T PTZ00433        228 TFTSVADFDTTVPRVILGGTAKNLVVPGWRL-GWLLLVDPHGNGGDFLDGMKRLGML--VCGPCSVVQAALGEALLNTPQ  304 (412)
T ss_pred             CccchhhccCCCceEEEccchhhcCCCCeeE-EEEEEeCCcccHHHHHHHHHHHhhc--cCCCChHHHHHHHHHHhcCcH
Confidence                 111   23588999999999999999 99985  2    3466666554321  122344444444444432 1 


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHhh
Q 013079          300 PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQ  373 (450)
Q Consensus       300 ~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~~l~  373 (450)
                      .++.+..++++++++.+.+.|+++ +..+..|.                   .|.++|+.++..     .....|.+.+.
T Consensus       305 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~-------------------gg~f~~~~l~~~~~~~~~~~~~~~~~ll  365 (412)
T PTZ00433        305 EHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPR-------------------GSMFLMSRLDLEKFRDIKSDVEFYEKLL  365 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCC-------------------eeEEEEEEechhhcCCCCCHHHHHHHHH
Confidence            335555566788889999999875 33333332                   466889888631     12456666664


Q ss_pred             ccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          374 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       374 ~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                      .  ..| +.+..|+.+                      +. ++++|||++ .
T Consensus       366 ~--~~g-V~v~pg~~f----------------------~~-~~~iRis~~-~  390 (412)
T PTZ00433        366 E--EEN-VQVLPGEIF----------------------HM-PGFTRLTIS-R  390 (412)
T ss_pred             H--hcC-EEEeCcccc----------------------CC-CCeEEEEec-C
Confidence            2  123 455544321                      11 368999999 6

>PRK07683 aminotransferase A; Validated

Probab=99.96  E-value=3.1e-26  Score=230.29  Aligned_cols=219  Identities=21%  Similarity=0.313  Sum_probs=167.5

Q ss_pred             hhHHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      +...++|+.+|+++    |    .+ ++++|+|   +++|+.+++..++++||+|+++.|.|+.+...+.     ..|.+
T Consensus        65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G---~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~  136 (387)
T PRK07683         65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIG---ASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIR-----LCGAK  136 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCC---hHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHH-----HcCCE
Confidence            34567888888876    2    34 7899999   9999999999999999999999999999887764     36888


Q ss_pred             EEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----c
Q 013079          170 TTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----P  235 (450)
Q Consensus       170 v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~  235 (450)
                      +.+++.+      |.+++++.+ ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++     .
T Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~  215 (387)
T PRK07683        137 PVFIDTRSTGFRLTAEALENAI-TEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSI  215 (387)
T ss_pred             EEEeecCcccCCCCHHHHHHhc-CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCCh
Confidence            8888754      568898888 778999999999999999965   788999999999999999999655322     1


Q ss_pred             cCC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHH
Q 013079          236 ARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHC  310 (450)
Q Consensus       236 ~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~  310 (450)
                      ..+    +.++++.|+||.+|.+|.|+ ||+++++++++.+..... ......+.+.+.++..++.. ..++.+..+++.
T Consensus       216 ~~~~~~~~~vi~~~s~SK~~~~pGlRi-G~i~~~~~l~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  293 (387)
T PRK07683        216 AHFPEMREKTIVINGLSKSHSMTGWRI-GFLFAPSYLAKHILKVHQ-YNVTCASSISQYAALEALTAGKDDAKMMRHQYK  293 (387)
T ss_pred             hhccCCcCCeEEEeeccccccCcccee-EEEEcCHHHHHHHHHHHH-hccCCCChHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            111    46799999999999999999 999999999988876543 21122233444444444432 234444455678


Q ss_pred             HHHHHHHHHHHhCCCeee
Q 013079          311 HRALIFARRMKKLGLKVL  328 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~v~  328 (450)
                      ++++.+.+.|++.+..+.
T Consensus       294 ~~~~~~~~~l~~~~~~~~  311 (387)
T PRK07683        294 KRRDYVYNRLISMGLDVE  311 (387)
T ss_pred             HHHHHHHHHHHHcCCccc
Confidence            888899999988755443

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.96  E-value=9.6e-27  Score=234.37  Aligned_cols=244  Identities=16%  Similarity=0.212  Sum_probs=180.3

Q ss_pred             hhHHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           99 PTVLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        99 ~~~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      +...++|+.+|+++    |    .+++++|+|   +++|+.+++.+++++||+|++++|+|.++...+.     ..|.++
T Consensus        70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G---~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~-----~~g~~~  141 (391)
T PRK08361         70 AGIPELREAIAEYYKKFYGVDVDVDNVIVTAG---AYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAK-----IAEAKP  141 (391)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCC---hHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-----HcCCEE
Confidence            34567888888875    3    357899999   9999999999999999999999999999887664     257777


Q ss_pred             EEeCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----
Q 013079          171 TFVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----  235 (450)
Q Consensus       171 ~~v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----  235 (450)
                      ..++.       .|++++++++ ++++++|++++|+||||.+.+   +++|+++|+++++++|+|++|..+.++.     
T Consensus       142 ~~v~~~~~~~~~~d~~~l~~~i-~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~  220 (391)
T PRK08361        142 IRIPLREENEFQPDPDELLELI-TKRTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYP  220 (391)
T ss_pred             EEEecCCccCCCCCHHHHHHhc-ccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCC
Confidence            77654       2789999988 778999999999999999998   8899999999999999999996553221     


Q ss_pred             -c--CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC---cHHHHHHHH
Q 013079          236 -A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKEH  309 (450)
Q Consensus       236 -~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~  309 (450)
                       .  ....++++.|+||.+|.+|+|+ ||+++++++++.+..... ......+.+.+.++..++....   ++....+++
T Consensus       221 ~~~~~~~~~i~~~s~SK~~~~~GlRi-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  298 (391)
T PRK08361        221 MIKYAPDNTILANSFSKTFAMTGWRL-GFVIAPEQVIKDMIKLHA-YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEY  298 (391)
T ss_pred             HhhcCCCCEEEEecCchhcCCcHhhh-hhhccCHHHHHHHHHHHh-hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence             1  1246899999999999999998 999999998888766543 1112223334444444443322   245555667


Q ss_pred             HHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHh
Q 013079          310 CHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYL  372 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l  372 (450)
                      .++++.+.+.|++++ ..+..|.                   .|.++|+.++. .....+|.+.+
T Consensus       299 ~~~~~~~~~~L~~~~~~~~~~p~-------------------g~~~~~~~l~~~~~~~~~l~~~l  344 (391)
T PRK08361        299 NERRKLVLKRLKEMPHIKVFEPK-------------------GAFYVFANIDETGMSSEDFAEWL  344 (391)
T ss_pred             HHHHHHHHHHHHhCCCCeecCCC-------------------EEEEEEEECCCCCCCHHHHHHHH
Confidence            888888999998863 3433332                   35578888863 11245566555

>PRK09105 putative aminotransferase; Provisional

Probab=99.96  E-value=7e-27  Score=233.22  Aligned_cols=277  Identities=17%  Similarity=0.199  Sum_probs=197.3

Q ss_pred             ChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           98 NPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      .+...+|++.||+.+|.  +++++|+|   +++++.+++.+++++||+|++++|+|+.+...+.     ..|.++..++.
T Consensus        77 ~~~~~~Lr~aia~~~~v~~e~I~it~G---s~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~-----~~g~~~~~v~~  148 (370)
T PRK09105         77 LELEDDLRTLFAAQEGLPADHVMAYAG---SSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAAD-----AQGAPVAKVPL  148 (370)
T ss_pred             CchHHHHHHHHHHHhCcChhhEEEcCC---hHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEecC
Confidence            34478899999999874  56899999   9999999999999999999999999999987765     36777777764


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc--cC----CCCeE
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP--AR----LGADV  242 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~--~~----~g~di  242 (450)
                      +     |++++++.  .+++++|++++||||||.+.+.++|.++++.  +++++|+||+|..+...+  ..    ....+
T Consensus       149 ~~~~~~d~~~l~~~--~~~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi  226 (370)
T PRK09105        149 RADGAHDVKAMLAA--DPNAGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLI  226 (370)
T ss_pred             CCCCCCCHHHHHhc--CCCCCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEE
Confidence            3     67788765  3578999999999999999998888887754  489999999994443221  11    13568


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      ++.|+||.+|++|+|+ ||+++++++++.+... . .  ...+.+.+.++..++...+++....+++.++++.+.+.|++
T Consensus       227 ~~~SfSK~~g~~GlRi-G~~v~~~~~i~~l~~~-~-~--~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~  301 (370)
T PRK09105        227 VLRTFSKLYGMAGMRL-GLAAARPDLLAKLARF-G-H--NPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKK  301 (370)
T ss_pred             EEecccHhhcCCccce-eeeecCHHHHHHHHhc-C-C--CCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999 9999999999888655 2 1  22333333444444444344555566778899999999998


Q ss_pred             CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCC
Q 013079          323 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE  402 (450)
Q Consensus       323 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~  402 (450)
                      +++.+..|                    .|+++.+.++.  ....+.+.|...   | +.+  |..+     +       
T Consensus       302 ~g~~~~~~--------------------~~~f~~~~~~~--~~~~l~~~L~~~---g-I~v--~~~~-----~-------  341 (370)
T PRK09105        302 KGYKCTPS--------------------QANCFMVDVKR--PAKAVADAMAKQ---G-VFI--GRSW-----P-------  341 (370)
T ss_pred             CCCCcCCC--------------------CCcEEEEeCCC--CHHHHHHHHHHC---C-cEE--ecCC-----C-------
Confidence            76544322                    24466677752  234566666542   2 333  3111     0       


Q ss_pred             CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          403 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       403 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                                ..++++|||++ .   ++..+.|.++|+.+.
T Consensus       342 ----------~~~~~~Ris~~-~---~~~~~~l~~al~~~~  368 (370)
T PRK09105        342 ----------IWPNWVRVTVG-S---EEEMAAFRSAFAKVM  368 (370)
T ss_pred             ----------CCCCeEEEEcC-C---HHHHHHHHHHHHHHh
Confidence                      01478999999 4   233566666666543

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.96  E-value=1.6e-26  Score=233.18  Aligned_cols=238  Identities=19%  Similarity=0.167  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHh----CC-----C-eEEEecChHHHHHHHHHHHHHhccC---CCEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079          102 LNLSRQMAALE----GT-----E-AAYCTASDKAGMSAISSVLMQLCSS---GGHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus       102 ~~l~~~iA~l~----g~-----~-~~~~tsg~~~gt~ai~~al~~l~~~---gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      .++|+.||+++    |.     + .+++|+|   +++++.+++.+++++   ||.|+++.|.|..+...+.     ..|.
T Consensus        68 ~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G---~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~  139 (396)
T PRK09147         68 PALREAIAAWLERRYGLPALDPATQVLPVNG---SREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAAL-----LAGA  139 (396)
T ss_pred             HHHHHHHHHHHHHHhCCCcCCccceEEECCC---hHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHH-----hcCC
Confidence            44666666543    52     3 6889999   999999999999999   8999999999998887764     3677


Q ss_pred             eEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---
Q 013079          169 TTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---  235 (450)
Q Consensus       169 ~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---  235 (450)
                      ++..++.+       |++++++.+ .++++++++++||||||.+.+   +++|+++|++++++||+||+|..+.++.   
T Consensus       140 ~~~~vp~~~~~~~~~d~~~l~~~~-~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~  218 (396)
T PRK09147        140 EPYFLNCDPANNFAPDFDAVPAEV-WARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAP  218 (396)
T ss_pred             EEEEeccCccccCccCHHHHHHHH-hhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCC
Confidence            88877653       678888877 678999999999999999975   7788899999999999999996553221   


Q ss_pred             ----c---------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcH
Q 013079          236 ----A---------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL  302 (450)
Q Consensus       236 ----~---------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l  302 (450)
                          .         ..+..+++.|+||.++++|+|+ ||+++++++++.+....... ....+.+.+.++...+...+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRi-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~a~~~~~~~~~~~  296 (396)
T PRK09147        219 PLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRS-GFVAGDAALLKKFLLYRTYH-GCAMPPAVQAASIAAWNDEAHV  296 (396)
T ss_pred             CchhhhhccccCccccccEEEEeccccccCCcccee-eeecCCHHHHHHHHHHhhhc-ccCCCHHHHHHHHHHhcchhHH
Confidence                0         1235699999999999999999 99999999998887655411 1122333344433333333445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013079          303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL  372 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l  372 (450)
                      .+..+.++++++.+.+.|+++ ..+..|                   ..|.++|++++.  ....|...+
T Consensus       297 ~~~~~~~~~~~~~~~~~L~~~-~~~~~p-------------------~~g~f~~~~~~~--~~~~~~~~l  344 (396)
T PRK09147        297 RENRALYREKFDAVTPILAPV-LDVQLP-------------------DAGFYLWAKVPG--DDTEFARRL  344 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCCCCC-------------------CeeEEEEEECCC--CHHHHHHHH
Confidence            566667788888898988874 332223                   257799999872  134555554

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.3e-26  Score=231.39  Aligned_cols=284  Identities=14%  Similarity=0.114  Sum_probs=201.2

Q ss_pred             hHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-
Q 013079          100 TVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-  176 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-  176 (450)
                      ....||+.||++++.  +++++|+|   +++++..++..++++||.|++..|+|+.+...+.     ..|.++..++.+ 
T Consensus        68 ~~~~Lr~~ia~~~~~~~~~I~it~G---~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~vp~~~  139 (369)
T PRK08153         68 ENHDLRHALAAHHGVAPENIMVGEG---IDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVA-----GFGGRLVTVPYRD  139 (369)
T ss_pred             ccHHHHHHHHHHhCCCHHHEEEcCC---HHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHH-----HcCCeEEEeeCCC
Confidence            367899999999985  46899999   9999999999989999999999999999887664     256677666543 


Q ss_pred             ---CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCCCCCCCc--cC----CCCeEEEe
Q 013079          177 ---DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLSP--AR----LGADVVVH  245 (450)
Q Consensus       177 ---d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~~~--~~----~g~di~~~  245 (450)
                         |++++.+.+.++++++|++++|+||||.+.+.+++.++++..  ++++|+||+|..+....  ..    ....+++.
T Consensus       140 ~~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~  219 (369)
T PRK08153        140 DREDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMR  219 (369)
T ss_pred             CCCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEe
Confidence               678887766456899999999999999999988777777643  89999999995554321  11    13569999


Q ss_pred             CCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          246 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       246 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      |+||.+|.+|+|+ ||+++++++++.+......   ...+.+.+.++..++...+++....+.+.++++.+.+.|++.+.
T Consensus       220 SfSK~~g~~GlRi-G~~v~~~~~~~~l~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~g~  295 (369)
T PRK08153        220 TFSKAYGLAGARV-GYAIGAPGTIKAFDKVRNH---FGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARANGL  295 (369)
T ss_pred             cchHhccCcchhe-eeeecCHHHHHHHHHhhcC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            9999999999999 9999999999888766541   23334444444444443333444555667888889889987765


Q ss_pred             eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079          326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN  404 (450)
Q Consensus       326 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~  404 (450)
                      .+ .|.                   .|.++++.++ +...+..+++++...   | +.+..         |...      
T Consensus       296 ~~-~p~-------------------~~~f~~~~~~~~~~~a~~l~~~l~~~---G-i~v~~---------p~~~------  336 (369)
T PRK08153        296 TP-LPS-------------------ATNFVAIDCGRDGAFARAVLDGLIAR---D-IFVRM---------PGVA------  336 (369)
T ss_pred             cc-CCC-------------------cCcEEEEECCCCcccHHHHHHHHHHC---C-eEEee---------CCCC------
Confidence            32 232                   4568888875 233466777777642   3 33311         1100      


Q ss_pred             HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                              ..++++|||++..++.+.+++.|.+++..+
T Consensus       337 --------~~~~~iRis~~~~~~~~~~~~al~~~~~~~  366 (369)
T PRK08153        337 --------PLDRCIRVSCGPDEELDLFAEALPEALEAA  366 (369)
T ss_pred             --------CCCCeEEEecCCHHHHHHHHHHHHHHHHHh
Confidence                    014689999993345555555555555444

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.1e-26  Score=232.07  Aligned_cols=217  Identities=20%  Similarity=0.255  Sum_probs=164.9

Q ss_pred             hHHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ....||+.||+++    |    .+++++|+|   +++|+.+++.+++++||+|++++|+|..+...+.     ..|.++.
T Consensus        69 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~  140 (393)
T PRK05764         69 GIPELREAIAAKLKRDNGLDYDPSQVIVTTG---AKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVK-----LAGGVPV  140 (393)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCHHHEEEeCC---cHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHH-----HcCCEEE
Confidence            4577888888876    2    256899999   9999999999999999999999999998877664     3677887


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------  235 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------  235 (450)
                      +++.+       |++++++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++++|++|..+.++.      
T Consensus       141 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~  219 (393)
T PRK05764        141 FVPTGEENGFKLTVEQLEAAI-TPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSI  219 (393)
T ss_pred             EEecCcccCCcCCHHHHHHhh-CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccH
Confidence            77653       578999988 788999999999999999965   7899999999999999999985543211      


Q ss_pred             -----cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHHHHHHH
Q 013079          236 -----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEH  309 (450)
Q Consensus       236 -----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~~~  309 (450)
                           ...+.++++.|+||.++++|.|+ ||+++++++++.+....... ....+.+.+.++...+. ..+++....+++
T Consensus       220 ~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~i~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~  297 (393)
T PRK05764        220 ASLSPELRDRTITVNGFSKAYAMTGWRL-GYAAGPKELIKAMSKLQSHS-TSNPTSIAQYAAVAALNGPQDEVEEMRQAF  297 (393)
T ss_pred             HHcCCCCcCCEEEEecCcccccCcccee-EEEecCHHHHHHHHHHHhhc-ccCCChHHHHHHHHHHcCChHHHHHHHHHH
Confidence                 11247899999999999999998 99999999998887655411 11222333333333333 223344455567


Q ss_pred             HHHHHHHHHHHHhC-CCee
Q 013079          310 CHRALIFARRMKKL-GLKV  327 (450)
Q Consensus       310 ~~~~~~l~~~L~~~-~~~v  327 (450)
                      .++++.+.+.|+++ +..+
T Consensus       298 ~~~~~~l~~~L~~~~g~~~  316 (393)
T PRK05764        298 EERRDLMVDGLNEIPGLEC  316 (393)
T ss_pred             HHHHHHHHHHHhhCCCCcc
Confidence            78888899999887 4444

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.96  E-value=3.3e-26  Score=230.33  Aligned_cols=231  Identities=21%  Similarity=0.264  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHhC----C-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALEG----T-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~g----~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++++.+|++++    .     +++++|+|   +++|+++++..++.+||+|++++|.|.++...++     ..|.++.
T Consensus        69 ~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G---~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~  140 (391)
T PRK07309         69 LLELRQAAADFVKEKYNLDYAPENEILVTIG---ATEALSASLTAILEPGDKVLLPAPAYPGYEPIVN-----LVGAEIV  140 (391)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCcEEEeCC---hHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-----HcCCEEE
Confidence            4667777777653    1     46899999   9999999999999999999999999999887765     3577777


Q ss_pred             EeCCC------CHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------
Q 013079          172 FVDIS------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------  234 (450)
Q Consensus       172 ~v~~~------d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------  234 (450)
                      +++.+      |++++++++..  +++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.++      
T Consensus       141 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~  220 (391)
T PRK07309        141 EIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVS  220 (391)
T ss_pred             EEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCC
Confidence            77642      78899888832  36899999999999999875   889999999999999999999655431      


Q ss_pred             ccC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC-cHHHHHHHHHH
Q 013079          235 PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCH  311 (450)
Q Consensus       235 ~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-~l~~~~~~~~~  311 (450)
                      ...  .+..+++.|+||.+|.+|+|+ ||+++++++++.+..... ......+.+.+.++..++.... +.....+++.+
T Consensus       221 ~~~~~~~~~i~~~S~SK~~g~~GlRv-G~~v~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  298 (391)
T PRK07309        221 IAEYLPDQTILINGLSKSHAMTGWRI-GLIFAPAEFTAQLIKSHQ-YLVTAATTMAQFAAVEALTNGKDDALPMKKEYIK  298 (391)
T ss_pred             HHHhccCCEEEEecChhhccCcccee-EEEEeCHHHHHHHHHHHh-hcccCCChHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence            111  145699999999999999998 999999999988876543 2112334444454544443322 23333455678


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +++.+.+.|++++..+..|.                   .|.++|+.++
T Consensus       299 ~~~~~~~~l~~~~~~~~~p~-------------------gg~~~~~~l~  328 (391)
T PRK07309        299 RRDYIIEKMTDLGFKIIKPD-------------------GAFYIFAKIP  328 (391)
T ss_pred             HHHHHHHHHHHCCCeecCCC-------------------eeEEEEEECC
Confidence            88889999988765544332                   3556788877

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=4.3e-27  Score=233.31  Aligned_cols=281  Identities=16%  Similarity=0.191  Sum_probs=202.6

Q ss_pred             ccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           93 YSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ..+|..+...++++.+|+.+|.  +++++|+|   +++++.+++.+++++| |+|+++.|+|..+...++     ..|.+
T Consensus        51 ~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~G---s~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~-----~~G~~  122 (351)
T PRK01688         51 LNRYPECQPKAVIENYAAYAGVKPEQVLVSRG---ADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVE  122 (351)
T ss_pred             cccCCCCChHHHHHHHHHHhCCCHHHEEEcCC---HHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHH-----HcCCE
Confidence            4456677778999999999986  45899999   9999999999998887 899999999998877664     36778


Q ss_pred             EEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc------c
Q 013079          170 TTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP------A  236 (450)
Q Consensus       170 v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~------~  236 (450)
                      +..++.+     |++++++++  +++++|++++||||||.+.+.++|.++++.  .++++|+||+|..+....      .
T Consensus       123 ~~~v~~~~~~~~d~~~l~~~~--~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~  200 (351)
T PRK01688        123 IRTVPTLDNWQLDLPAIADNL--DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLA  200 (351)
T ss_pred             EEEeecCCCCCCCHHHHHHhc--cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHh
Confidence            8777653     788898877  489999999999999999987777776653  268999999996654221      1


Q ss_pred             CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHHHHHHHHHHHHH
Q 013079          237 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRAL  314 (450)
Q Consensus       237 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~  314 (450)
                      ..+..+++.|+||.+|++|+|+ ||+++++++++.+...+..   ...+.+.+.++..++..  .+++..+.+.+.++++
T Consensus       201 ~~~n~iv~rSfSK~~glaGlRi-Gy~i~~~~~i~~l~~~~~~---~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~  276 (351)
T PRK01688        201 EYPHLVILRTLSKAFALAGLRC-GFTLANEEVINLLLKVIAP---YPLSTPVADIAAQALSPQGIAAMRERVAEINANRQ  276 (351)
T ss_pred             hCCCEEEEecchHhhcCHHHHH-hHHhCCHHHHHHHHhccCC---CCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            2357899999999999999999 9999999999888766542   22233334444444332  2345556667778889


Q ss_pred             HHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccc
Q 013079          315 IFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS  393 (450)
Q Consensus       315 ~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~  393 (450)
                      ++.+.|++++. ...+|.                   .++++++.+++   ...+.+.|...   | +.+..++..    
T Consensus       277 ~l~~~L~~~~~~~~~~ps-------------------~~nfi~~~~~~---~~~l~~~L~~~---g-i~vr~~~~~----  326 (351)
T PRK01688        277 WLIAALKEIPCVEQVFDS-------------------ETNYILARFTA---SSAVFKSLWDQ---G-IILRDQNKQ----  326 (351)
T ss_pred             HHHHHHHhCCCCCeECCC-------------------CCcEEEEEcCC---HHHHHHHHHHC---C-eEEEECCCc----
Confidence            99999988743 333443                   35688888863   34566666542   3 444432110    


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          394 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                                       .|. ++++|||+| .   .+..+.|.++|
T Consensus       327 -----------------~~~-~~~iRis~~-~---~~e~~~l~~al  350 (351)
T PRK01688        327 -----------------PGL-SNCLRITIG-T---REECQRVIDAL  350 (351)
T ss_pred             -----------------CCC-CCeEEEeCC-C---HHHHHHHHHhh
Confidence                             022 478999999 4   35556665554

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.7e-26  Score=230.30  Aligned_cols=288  Identities=17%  Similarity=0.226  Sum_probs=199.7

Q ss_pred             hHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC--
Q 013079          100 TVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI--  175 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~--  175 (450)
                      ...++|+.+|+++|.  +++++|+|   +++|+++++.+++.+||+|++++|.|..+...+.     ..|.++.+++.  
T Consensus        67 g~~~lr~~ia~~l~~~~~~v~~~~g---~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~~  138 (380)
T PRK06225         67 GFPELRELILKDLGLDDDEALITAG---ATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFAS-----RFGAEVIEVPIYS  138 (380)
T ss_pred             chHHHHHHHHHhcCCCCCcEEEeCC---HHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----HhCceEEeecccc
Confidence            468899999999886  46899999   9999999999999999999999999998766554     25777777653  


Q ss_pred             ------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--c-c--CCCCe
Q 013079          176 ------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--P-A--RLGAD  241 (450)
Q Consensus       176 ------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~--~-~--~~g~d  241 (450)
                            .|++++++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+...  + .  ....+
T Consensus       139 ~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  217 (380)
T PRK06225        139 EECNYKLTPELVKENM-DENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHT  217 (380)
T ss_pred             ccCCccCCHHHHHhhc-CCCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCE
Confidence                  2788999988 788999999999999999865   889999999999999999998433211  1 1  12467


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH-HHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM-KEHCHRALIFARRM  320 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~~~l~~~L  320 (450)
                      +++.|+||++|++|.|+ ||+++++++++.+......  ....+.+.+.++...+.......+++ +.+.++++.+.+.|
T Consensus       218 i~~~s~SK~~g~~G~Ri-G~i~~~~~l~~~~~~~~~~--~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L  294 (380)
T PRK06225        218 VTSYSFSKIFGMAGLRI-GAVVATPDLIEVVKSIVIN--DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAV  294 (380)
T ss_pred             EEEeechhhcCCcccee-EEEecCHHHHHHHHHHHhc--ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999998 9999999998887765421  12223333333333333322222333 33456677778888


Q ss_pred             HhCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccccccccccccc
Q 013079          321 KKLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS  397 (450)
Q Consensus       321 ~~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~  397 (450)
                      ++++ ..+. .|                   ..|+++++.++. ......|...|..   .| +.+..|..++.      
T Consensus       295 ~~~~~~~~~~~~-------------------~~g~~~~~~~~~~~~~~~~l~~~l~~---~g-i~v~~g~~~~~------  345 (380)
T PRK06225        295 DEIEGVFLPVYP-------------------SHGNMMVIDISEAGIDPEDLVEYLLE---RK-IFVRQGTYTSK------  345 (380)
T ss_pred             HhCcCCccccCC-------------------CCCeEEEEEcccccCCHHHHHHHHHH---CC-EEEcCCcccCc------
Confidence            7753 2221 22                   246688888863 1235567777654   23 45554432110      


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHhh
Q 013079          398 STSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       398 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~~  443 (450)
                                    ...++.+|+|++ .  ++.++.++.|.+++++++
T Consensus       346 --------------~~~~~~iR~s~~-~~~e~l~~~~~~l~~~~~~~~  378 (380)
T PRK06225        346 --------------RFGDRYIRVSFS-IPREQVEVFCEEFPDVVETLR  378 (380)
T ss_pred             --------------CCCCceEEEEeC-CCHHHHHHHHHHHHHHHHHhh
Confidence                          112468999999 6  345556666666666554

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.96  E-value=2.6e-26  Score=234.29  Aligned_cols=275  Identities=20%  Similarity=0.213  Sum_probs=201.4

Q ss_pred             CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC----CHHHHHHhhhcCC
Q 013079          114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGR  189 (450)
Q Consensus       114 ~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~----d~~~l~~ai~~~~  189 (450)
                      ++++++|+|   +++|+.++++.++++||.|++.+|+|++....++     ..|.++..|+.|    |+++|++.++..+
T Consensus       155 ~~~IiiT~G---~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~-----~~g~~~~~vp~d~~G~~~e~le~~~~~~~  226 (459)
T COG1167         155 PEQIVITSG---AQQALDLLLRLLLDPGDTVLVEDPTYPGALQALE-----ALGARVIPVPVDEDGIDPEALEEALAQWK  226 (459)
T ss_pred             cCeEEEeCC---HHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHHHH-----HcCCcEEecCCCCCCCCHHHHHHHHhhcC
Confidence            367999999   9999999999999999999999999999999886     368888888776    8999999995557


Q ss_pred             ceEEEEe-cCCCCcccccCH---HHHHHHHHhcCCEEEEeCCCCCCCCCccC---------CCCeEEEeCCCCccccCcc
Q 013079          190 TKVLYFE-SISNPTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSPAR---------LGADVVVHSISKFISGGAD  256 (450)
Q Consensus       190 t~lv~i~-~~~NptG~v~~l---~~I~~la~~~gi~livD~~~~~~~~~~~~---------~g~di~~~S~sK~~g~~g~  256 (450)
                      +|++|++ +.+||||.+.++   ++|.++|+++|+++|.|+.|+.+.++...         .+.+++++||||.+. ||.
T Consensus       227 ~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~-Pgl  305 (459)
T COG1167         227 PKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA-PGL  305 (459)
T ss_pred             CcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc-ccc
Confidence            9998886 579999999874   49999999999999999999777654222         168999999999999 899


Q ss_pred             ceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-c--CCcHHHHHHHHHHHHHHHHHHHHhCCC---eeeCC
Q 013079          257 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-R--IPHLGLRMKEHCHRALIFARRMKKLGL---KVLYP  330 (450)
Q Consensus       257 ~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~--~~~l~~~~~~~~~~~~~l~~~L~~~~~---~v~~p  330 (450)
                      |+ ||+++++++++.+..... .....++.+.+...+..+. +  .+++....+.+.++++.+.+.|+++..   .+..|
T Consensus       306 Rl-G~vv~p~~~~~~~~~~k~-~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p  383 (459)
T COG1167         306 RL-GYVVAPPELIEKLLRLKQ-AADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRP  383 (459)
T ss_pred             ce-eeeeCCHHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecC
Confidence            99 999999999998877655 2224445555454444333 2  123344445578899999999998742   34444


Q ss_pred             CCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc-ccccccccccccccCCCCCHHHHH
Q 013079          331 GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKA  409 (450)
Q Consensus       331 ~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~-G~~~s~~~~~~~~~~~~~~~~~~~  409 (450)
                      .                   .|.++|++++...+...++..+...   | +.+.. |......                 
T Consensus       384 ~-------------------gG~flwl~l~~~~~~~~l~~~a~~~---g-v~i~~~g~~f~~~-----------------  423 (459)
T COG1167         384 E-------------------GGLFLWLELPEGIDARELLAAALEK---G-VVVTPLGSAFSAD-----------------  423 (459)
T ss_pred             C-------------------ceEEEEEEcCCCCCHHHHHHHHHHC---C-CEEEcCCccccCC-----------------
Confidence            3                   5789999999654456676666542   2 33333 4222110                 


Q ss_pred             hcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          410 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       410 ~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                        +-..+.+|||++ ..+.+++.+.+......+
T Consensus       424 --~~~~~~~Rl~~s-~~~~e~i~~gi~~l~~~~  453 (459)
T COG1167         424 --GDPRNGLRLSFS-SPSEEEIEEGIKRLAALL  453 (459)
T ss_pred             --CCCCCeEEEEcC-CCCHHHHHHHHHHHHHHH
Confidence              002468999999 766666555554443333

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.5e-26  Score=231.50  Aligned_cols=244  Identities=18%  Similarity=0.194  Sum_probs=177.1

Q ss_pred             hhHHHHHHHHHHHhC--------C--CeEEEecChHHHHHHHHHHHHHhccCCC-EEEEeCCCchhHHHHHHHhCCCccC
Q 013079           99 PTVLNLSRQMAALEG--------T--EAAYCTASDKAGMSAISSVLMQLCSSGG-HVVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g--------~--~~~~~tsg~~~gt~ai~~al~~l~~~gd-~Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      +...+||+.||++++        .  +++++|+|   +++++..++.+++.+|| +|+++.|+|..+...++     ..|
T Consensus        66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~G---a~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~-----~~g  137 (374)
T PRK02610         66 GGHEALKQAIAEYVNESAAGSSQITPANISVGNG---SDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQ-----TLG  137 (374)
T ss_pred             CchHHHHHHHHHHhCccccccCCCCHHHEEEcCC---hHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHH-----HcC
Confidence            456778899998876        2  45899999   99999988888777786 89999999999988775     367


Q ss_pred             eeEEEeCCC------CHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHh-cCCEEEEeCCCCCCCCCc--
Q 013079          168 ITTTFVDIS------DHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPLVLSP--  235 (450)
Q Consensus       168 ~~v~~v~~~------d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~~~~~--  235 (450)
                      .++..++.+      |+++|++++..   .++++|++++||||||.+.+.+++.++++- +++++|+|++|..+....  
T Consensus       138 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~  217 (374)
T PRK02610        138 IPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLV  217 (374)
T ss_pred             CEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchH
Confidence            788777643      78899888832   589999999999999999887766665532 489999999996653221  


Q ss_pred             ---cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079          236 ---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR  312 (450)
Q Consensus       236 ---~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~  312 (450)
                         ......+++.|+||.+|++|+|+ ||+++++++++.+...+..   ...+.+.+.++..++...+...+.+++..+.
T Consensus       218 ~~~~~~~~~ivi~SfSK~~g~~GlRi-G~~v~~~~l~~~l~~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  293 (374)
T PRK02610        218 GELAQHPNWVILRTFSKAFRLAAHRV-GYAIGHPELIAVLEKVRLP---YNLPSFSQLAAQLALEHRQELLAAIPEILQE  293 (374)
T ss_pred             HHHhcCCCEEEEEecchhccCcccce-eeeecCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence               11134688999999999999999 9999999999888766531   2234455555555544333344445555555


Q ss_pred             HHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          313 ALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       313 ~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ++.+.+.|++++. .+ .|.                   .|.++|+.++.......|.+.+..
T Consensus       294 r~~l~~~L~~~~~~~~-~p~-------------------~g~f~~~~l~~~~~~~~~~~~l~~  336 (374)
T PRK02610        294 RDRLYQALQELPQLRV-WPS-------------------AANFLYLRLSQDAALAALHQALKA  336 (374)
T ss_pred             HHHHHHHHHhCCCcEe-CCC-------------------cceEEEEeCCCCCCHHHHHHHHHH
Confidence            7778888877633 32 232                   467899998743335667777654

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=8.4e-27  Score=231.90  Aligned_cols=278  Identities=17%  Similarity=0.206  Sum_probs=202.1

Q ss_pred             hhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           99 PTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      +...++|+.||++++.   +.+++|+|   +++++.+++..++++||+|+++.|.|..+...+.     ..|.++..++.
T Consensus        63 ~~~~~lr~~ia~~~~~~~~~~I~~t~G---~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~i~~  134 (356)
T PRK04870         63 PRAAALKAALRAAMGVPAGADVLLGNG---SDELIQLLALACAKPGATVLAPEPGFVMYRMSAK-----LAGLEFVGVPL  134 (356)
T ss_pred             CCHHHHHHHHHHHhCcCCCCcEEEcCC---HHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHH-----HcCCEEEEecC
Confidence            4468899999999985   36899999   9999999999889999999999999998877764     36888888765


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-----cCCCCeEEEe
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----ARLGADVVVH  245 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~-----~~~g~di~~~  245 (450)
                      +     |++++++++...++++|++++||||||.+.+.+++.++++..++++|+|++|..+....     ...+..+++.
T Consensus       135 ~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~  214 (356)
T PRK04870        135 TADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMR  214 (356)
T ss_pred             CCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEe
Confidence            3     78999998844589999999999999999998888888877688999999995554321     1224679999


Q ss_pred             CCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-
Q 013079          246 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-  324 (450)
Q Consensus       246 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-  324 (450)
                      |+|| ++.+|+|+ ||+++++++++.+...+..   ...+.+.+.++..++...+.+.+..+++.++++.+.+.|++++ 
T Consensus       215 S~SK-~~~~GlRi-G~~i~~~~~i~~~~~~~~~---~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~  289 (356)
T PRK04870        215 TVSK-LGLAGLRL-GYLAGHPAWIAELDKVRPP---YNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAALPG  289 (356)
T ss_pred             cchh-hhhHHHhh-hhhhCCHHHHHHHHHccCC---CcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999 89999999 9999999999888765531   1223344444444443333455566677888899999998763 


Q ss_pred             CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079          325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN  404 (450)
Q Consensus       325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~  404 (450)
                      ..+ .|.                   .|+++++.+++   ...+...|...   | +.+..|....              
T Consensus       290 ~~~-~~~-------------------~~~~~~~~~~~---~~~~~~~l~~~---g-I~v~~~~~f~--------------  328 (356)
T PRK04870        290 VTV-FPS-------------------AANFILVRVPD---AAAVFDGLKTR---G-VLVKNLSGMH--------------  328 (356)
T ss_pred             cEE-CCC-------------------CCeEEEEECCC---HHHHHHHHHHC---C-EEEEECCCCC--------------
Confidence            332 232                   35689999873   34566666542   2 4554432210              


Q ss_pred             HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                             +..+++||||++ .   .+..+.|.++|.+
T Consensus       329 -------~~~~~~iRis~~-~---~~~~~~l~~al~~  354 (356)
T PRK04870        329 -------PLLANCLRVTVG-T---PEENAQFLAALKA  354 (356)
T ss_pred             -------CCCCCeEEEeCC-C---HHHHHHHHHHHHH
Confidence                   012478999999 4   3445566666654

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=8.6e-27  Score=231.57  Aligned_cols=242  Identities=15%  Similarity=0.152  Sum_probs=178.9

Q ss_pred             ChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           98 NPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      .+...++|+.||++++.  +++++|+|   +++++.+++.+++++||+|++++|.|+.+...++     ..|.++..++.
T Consensus        59 ~~~~~~lr~aia~~~~~~~~~I~it~G---~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~  130 (353)
T PRK05387         59 DPNADALRQAIAAYYGLDPEQVFVGNG---SDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAG-----LYGIPYEEIPL  130 (353)
T ss_pred             CCcHHHHHHHHHHHhCCCHHHEEEcCC---HHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHH-----HcCCEEEEeec
Confidence            33457899999999975  56899999   9999999999999999999999999988776654     35777777765


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc-CCEEEEeCCCCCCCCCc-c----CCCCeEEE
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSP-A----RLGADVVV  244 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~~~~-~----~~g~di~~  244 (450)
                      +     |++++++     ++++|++++||||||.+.+.+++.++++.+ ++++|+|++|..+.... .    ..+.++++
T Consensus       131 ~~~~~~d~~~l~~-----~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~  205 (353)
T PRK05387        131 DDDFSIDVEDYLR-----PNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVV  205 (353)
T ss_pred             CCCCCCCHHHHHh-----cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEE
Confidence            3     5565542     467899999999999999999999999875 99999999985553211 1    12568999


Q ss_pred             eCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          245 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      +|+||.+|.+|+|+ ||+++++++++.+............+.+.+.++..++...+++.+..+++.++++.+.+.|++++
T Consensus       206 ~S~SK~~~~~GlR~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  284 (353)
T PRK05387        206 QTFSKSRSLAGLRV-GFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEALG  284 (353)
T ss_pred             EehhHhhcchhhhc-eeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999998 99999999998887665411111122333444434443333455556667888899999999887


Q ss_pred             CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      +.+ .|.                   .|+++++.+++. ....+.+.|..
T Consensus       285 ~~~-~~~-------------------~~~~~~~~~~~~-~~~~~~~~l~~  313 (353)
T PRK05387        285 FEV-LPS-------------------KANFVFARHPSH-DAAELAAKLRE  313 (353)
T ss_pred             CeE-CCC-------------------cCcEEEEECCCC-CHHHHHHHHHH
Confidence            654 232                   355888888743 24567777754

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.96  E-value=2.1e-26  Score=232.89  Aligned_cols=231  Identities=15%  Similarity=0.175  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..++|+.||++++        .+++++|+|   +++++.+++.+++.+||.|+++.|+|+.+...+.     ..|.++..
T Consensus        76 ~~~lr~aia~~~~~~~g~~~~~~~I~it~G---~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~  147 (409)
T PLN00143         76 ILPARRAIADYLSNDLPYQLSPDDVYLTLG---CKHAAEIIIKVLARPEANILLPRPGFPDVETYAI-----FHHLEIRH  147 (409)
T ss_pred             CHHHHHHHHHHHHhhcCCCCCHhhEEEecC---hHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHH-----HcCCEEEE
Confidence            4557777777762        356899999   9999999999999999999999999999887764     35777776


Q ss_pred             eCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c-
Q 013079          173 VDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A-  236 (450)
Q Consensus       173 v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~-  236 (450)
                      ++.       .|+++|++++ +++++++++++||||||.+.+   +++|+++|+++++++|+|++|..+.++.     . 
T Consensus       148 ~~~~~~~~~~~d~~~l~~~~-~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~  226 (409)
T PLN00143        148 FDLLPEKGWEVDLDAVEAIA-DENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMG  226 (409)
T ss_pred             EeccCCCCCcCCHHHHHHhc-ccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchh
Confidence            653       1789999888 778999999999999999987   7788899999999999999996654321     1 


Q ss_pred             CC---CCeEEEeCCCCccccCccceEEEEEc--CHHHH------HHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHH
Q 013079          237 RL---GADVVVHSISKFISGGADIIAGAVCG--PANLV------NSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLG  303 (450)
Q Consensus       237 ~~---g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~------~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~  303 (450)
                      .+   ...+++.|+||.|+++|+|+ ||+++  ++.++      +.+..... . ....+.+.+.++..++..  ..++.
T Consensus       227 ~~~~~~~vi~~~SfSK~f~~pGlRv-G~~v~~~p~~~~~~~~~~~~~~~~~~-~-~~~~~~~~q~a~~~~l~~~~~~~~~  303 (409)
T PLN00143        227 LFASIVPVITLGSISKRWMIPGWGL-GWLVTCDPSGLLQICEIADSIKKALN-P-APFPPTFIQAAIPEILEKTTEDFFS  303 (409)
T ss_pred             hhcccCcEEEEccchhhcCCCccce-EEEEeeCchhhhhhHHHHHHHHHHHh-c-cCCCCchHHHHHHHHHhcChHHHHH
Confidence            11   35689999999999999999 99987  33333      22322221 0 112344555555444432  23566


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +..++++++++.+.+.|++++.... +.   .|             ..|.++|++++
T Consensus       304 ~~~~~~~~~~~~~~~~L~~~~~~~~-~~---~p-------------~gg~f~w~~l~  343 (409)
T PLN00143        304 KTINILRAALAFCYDKLKEIPCIMC-PQ---KA-------------EGAFFALVKLN  343 (409)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCC-CC---CC-------------CeeEEEEEecc
Confidence            6667778888888888887643211 11   01             25778999986

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.96  E-value=2.6e-26  Score=238.81  Aligned_cols=217  Identities=15%  Similarity=0.161  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHHh------C--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALE------G--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~------g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ....||+.||+++      +  .+++++|+|   +++++++++.+++++||+|+++.|.|+.+...+.     ..|.++.
T Consensus       186 G~~~lReaia~~~~~~~~~~~~~~~I~it~G---~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~-----~~g~~~v  257 (517)
T PRK13355        186 GLFSARKAIMQYAQLKGLPNVDVDDIYTGNG---VSELINLSMSALLDDGDEVLIPSPDYPLWTACVN-----LAGGTAV  257 (517)
T ss_pred             ChHHHHHHHHHHHHhcCCCCCChhHEEEeCc---HHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHH-----HCCCEEE
Confidence            3677888888887      3  356899999   9999999999999999999999999999987764     3577776


Q ss_pred             EeCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013079          172 FVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------  235 (450)
Q Consensus       172 ~v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------  235 (450)
                      .++.       .|++++++++ ++++++|++++||||||.+.+   +++|+++|++|+++||+||+|..+.++.      
T Consensus       258 ~~~~~~~~~~~~d~~~l~~~~-~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~  336 (517)
T PRK13355        258 HYRCDEQSEWYPDIDDIRSKI-TSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSI  336 (517)
T ss_pred             EeecCcccCCCCCHHHHHHhc-CcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccH
Confidence            6643       2789999988 889999999999999999987   8899999999999999999996654431      


Q ss_pred             cCC--C-CeEEEeCCCCccccCccceEEEEE--cCHHHH----HHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHH--
Q 013079          236 ARL--G-ADVVVHSISKFISGGADIIAGAVC--GPANLV----NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL--  304 (450)
Q Consensus       236 ~~~--g-~di~~~S~sK~~g~~g~~igG~l~--~~~~~~----~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~--  304 (450)
                      ..+  + ..+++.|+||.++++|+|+ ||++  ++++++    +.+.....  .....+.+.+.++..++........  
T Consensus       337 ~~~~~~~~vi~~~S~SK~~~~~G~Ri-G~~i~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~aL~~~~~~~~~~  413 (517)
T PRK13355        337 ASLAPDLFCVTFSGLSKSHMIAGYRI-GWMILSGNKRIAKDYIEGLNMLAN--MRLCSNVPAQSIVQTALGGHQSVKDYL  413 (517)
T ss_pred             HHhCCCCeEEEEecchhhccCcccce-EEEEeeCchhhHHHHHHHHHHHhc--CcCCcChHHHHHHHHHhcCCccHHHHH
Confidence            112  1 2455699999999999999 9988  445443    33322221  1123344555555555543322222  


Q ss_pred             -HHHHHHHHHHHHHHHHHhC-CCeee
Q 013079          305 -RMKEHCHRALIFARRMKKL-GLKVL  328 (450)
Q Consensus       305 -~~~~~~~~~~~l~~~L~~~-~~~v~  328 (450)
                       ..+++.++++.+.+.|+++ +..+.
T Consensus       414 ~~~~~~~~~r~~l~~~L~~~~g~~~~  439 (517)
T PRK13355        414 VPGGRVYEQRELVYNALNAIPGISAV  439 (517)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcccC
Confidence             2234556678899999876 33443

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.96  E-value=3.8e-26  Score=232.07  Aligned_cols=213  Identities=17%  Similarity=0.197  Sum_probs=159.9

Q ss_pred             hHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...++|+.+|++++        .+++++|+|   +++|+.+++..++++||+|++++|.|+.+.....     ..|.++.
T Consensus        95 G~~~lr~aia~~~~~~~~~~~~~~~v~it~G---~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~-----~~g~~~~  166 (430)
T PLN00145         95 GLLPARRAIAEYLSRDLPYELSTDDIYLTAG---CAQAIEIIMSVLAQPGANILLPRPGYPLYEARAV-----FSGLEVR  166 (430)
T ss_pred             cCHHHHHHHHHHHhhccCCCCChhhEEEeCC---HHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEE
Confidence            45678888888864        356899999   9999999999999999999999999998876653     3577777


Q ss_pred             EeCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc---cC-
Q 013079          172 FVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP---AR-  237 (450)
Q Consensus       172 ~v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~---~~-  237 (450)
                      +++.       .|++++++++ +++++++++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.   .. 
T Consensus       167 ~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~  245 (430)
T PLN00145        167 HFDLLPERGWEVDLEGVEALA-DENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPM  245 (430)
T ss_pred             EeeCCcccCCcCCHHHHHHHh-CcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccch
Confidence            7653       1889999988 889999999999999999987   7788999999999999999996654321   11 


Q ss_pred             -----CCCeEEEeCCCCccccCccceEEEEEc--CHHHHHH------HHHHhhhhhhccCCCchHHHHHHHHcc--CCcH
Q 013079          238 -----LGADVVVHSISKFISGGADIIAGAVCG--PANLVNS------MMDLHQGALMLLGPTMNPKVAFELSER--IPHL  302 (450)
Q Consensus       238 -----~g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~~~------l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l  302 (450)
                           ....+++.|+||.|+++|+|+ ||++.  ++.+++.      +.....  .....+++.+.++..++..  .+++
T Consensus       246 ~~~~~~~~vi~~~S~SK~~~~pG~Rl-G~iv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~  322 (430)
T PLN00145        246 GVFGEVAPVLTLGSISKRWVVPGWRL-GWIATCDPNGILKETKVVDSIRNYLN--ISTDPATFVQGAIPQIIANTKEEFF  322 (430)
T ss_pred             hhhcccCcEEEEeccccccCCCCeeE-EEEEEecchhhhhhhHHHHHHHHHhc--ccCCCCHHHHHHHHHHHhcCHHHHH
Confidence                 136799999999999999999 99975  4444432      222221  0011233444444444433  2345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC
Q 013079          303 GLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      ....++++++++.+.+.|++++
T Consensus       323 ~~~~~~~~~~~~~~~~~L~~~~  344 (430)
T PLN00145        323 TKTLGLLKETADICYEKIKEIK  344 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Confidence            5666778888999999998763

>PLN02656 tyrosine transaminase

Probab=99.96  E-value=2.9e-26  Score=232.01  Aligned_cols=213  Identities=15%  Similarity=0.157  Sum_probs=162.7

Q ss_pred             hHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...++|+.+|++++        .+++++|+|   +++|+.+++.+++++||+|++++|.|+.+.....     ..|+++.
T Consensus        74 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~  145 (409)
T PLN02656         74 GLPQARRAIAEYLSRDLPYKLSLDDVFITSG---CTQAIDVALSMLARPGANILLPRPGFPIYELCAA-----FRHLEVR  145 (409)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcccEEEeCC---hHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHH-----HcCCEEE
Confidence            45667888888763        357899999   9999999999999999999999999998766553     2577777


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCCc---c--
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP---A--  236 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~~---~--  236 (450)
                      .++.+       |++++++++ ++++++|++++||||||.+.   ++++|+++|+++|+++|+|++|..+.++.   .  
T Consensus       146 ~i~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~  224 (409)
T PLN02656        146 YVDLLPEKGWEVDLDAVEALA-DQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPM  224 (409)
T ss_pred             EEeCCCcCCCCCCHHHHHHHh-ccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccH
Confidence            77642       788999888 78899999999999999995   58899999999999999999996654321   1  


Q ss_pred             ----CCCCeEEEeCCCCccccCccceEEEEEcC--------HHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC--CcH
Q 013079          237 ----RLGADVVVHSISKFISGGADIIAGAVCGP--------ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHL  302 (450)
Q Consensus       237 ----~~g~di~~~S~sK~~g~~g~~igG~l~~~--------~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l  302 (450)
                          .....+++.|+||.|+.+|+|+ ||++++        +++++.+......  ....+.+.+.++..++...  .++
T Consensus       225 ~~~~~~~~vi~~~SfSK~f~~pGlRi-G~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~  301 (409)
T PLN02656        225 GVFGSIVPVLTLGSLSKRWIVPGWRL-GWFVTTDPSGSFRDPKIVERIKKYFDI--LGGPATFIQAAVPTILEQTDESFF  301 (409)
T ss_pred             HHhcccCcEEEEcccchhccCcceeE-EEEEEeCcccccccHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHhcCcHHHH
Confidence                1135789999999999999999 999873        4677777655431  1122344555555554421  345


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC
Q 013079          303 GLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      ....++++++++.+.+.|++++
T Consensus       302 ~~~~~~~~~~r~~~~~~L~~~~  323 (409)
T PLN02656        302 KKTINILKQSSDICCDRIKEIP  323 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCC
Confidence            5566677888899999998764

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.96  E-value=1e-26  Score=232.96  Aligned_cols=328  Identities=17%  Similarity=0.216  Sum_probs=219.5

Q ss_pred             HHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCC
Q 013079           74 ETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAART  149 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~  149 (450)
                      +++.+.++...+|+.. .|.......+..+++++.+++++|.+   .+++|+|   +++++++++.+++++||+|+++.+
T Consensus        18 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g---~t~al~~~~~~~~~~gd~vl~~~~   94 (376)
T TIGR01977        18 EAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNN---ATTALNIALKGLLKEGDHVITTPM   94 (376)
T ss_pred             HHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCC---HHHHHHHHHHhccCCCCEEEECcc
Confidence            5666666543334321 11111112367889999999999964   5799999   999999999998899999999999


Q ss_pred             CchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079          150 LYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV  224 (450)
Q Consensus       150 ~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv  224 (450)
                      +|+++...+...... .|.++..++.+     |++++++++ ++++++|++++++||||.+.|+++|.++|+++|+++|+
T Consensus        95 ~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~liv  172 (376)
T TIGR01977        95 EHNSVARPLECLKEQ-IGVEITIVKCDNEGLISPERIKRAI-KTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFIL  172 (376)
T ss_pred             hhhHHHHHHHHHHHH-cCcEEEEEecCCCCCcCHHHHHHhc-CCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEE
Confidence            999887665443333 58888887654     799999999 78899999999999999999999999999999999999


Q ss_pred             eCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh----hhh--------hhccCCCchHH
Q 013079          225 DNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH----QGA--------LMLLGPTMNPK  290 (450)
Q Consensus       225 D~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~----~~~--------~~~~g~~~~~~  290 (450)
                      |+++  +....+....++|+++.|+||++++|.. .|++++.+...+.++....    ...        .....+++...
T Consensus       173 D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g-~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~  251 (376)
T TIGR01977       173 DAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQG-TGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTP  251 (376)
T ss_pred             EhhhccCccCCCchhcCCCEEEecccccccCCCC-ceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHH
Confidence            9998  4444555567899999999999875543 4344455543222211100    000        00011122221


Q ss_pred             HHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH
Q 013079          291 VAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK  364 (450)
Q Consensus       291 ~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~  364 (450)
                      ....+...++.     .....++..++++++.+.|++.+. .+..|.-+   .            ..+++++|.+++.. 
T Consensus       252 ~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~------------~~~~~v~~~~~~~~-  315 (376)
T TIGR01977       252 GIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADP---A------------NRVGVVSFTVEGID-  315 (376)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCc---c------------ccCCeEEEEECCCC-
Confidence            11111112222     233445667888888899887653 55443211   1            13568999987543 


Q ss_pred             HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcC-CCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          365 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAG-ISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       365 ~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g-~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ...+.+.|...  +| +.++.|..|+....+.              +| ...+.||||++ ..+++++++.+.++|+.
T Consensus       316 ~~~~~~~L~~~--~g-i~v~~g~~~~~~~~~~--------------~g~~~~~~iRis~~-~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       316 SEEVADILDEK--FD-IATRTGLHCAPLAHKT--------------IGTFATGTIRLSLG-YFNTEEEIEKLLEALSE  375 (376)
T ss_pred             HHHHHHHHhcc--CC-EEEEcccccchHHHHH--------------hCCCCCCeEEEecC-CCCCHHHHHHHHHHHhh
Confidence            55677777642  24 6777776665432211              22 23578999999 99999999999998875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.96  E-value=4.5e-26  Score=228.91  Aligned_cols=282  Identities=15%  Similarity=0.207  Sum_probs=197.3

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ...+|+.||+++    |    .+++++|+|   +++|+.+++.+++++||+|++++|.|..+...+.     ..|.++..
T Consensus        68 ~~~lr~~ia~~~~~~~~~~~~~~~i~it~G---~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~  139 (384)
T PRK06348         68 DVELIEEIIKYYSKNYDLSFKRNEIMATVG---ACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIE-----MVGGKPII  139 (384)
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCC---hHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHH-----HcCCEEEE
Confidence            345777777765    2    467899999   9999999999999999999999999999988875     24666666


Q ss_pred             eCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC----c-cC
Q 013079          173 VDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----P-AR  237 (450)
Q Consensus       173 v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~----~-~~  237 (450)
                      ++.       .|++++++++ ++++++|++++||||||.+.+   +++|.++|+++++++|+|++|..+.++    + ..
T Consensus       140 ~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  218 (384)
T PRK06348        140 LETYEEDGFQINVKKLEALI-TSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMAT  218 (384)
T ss_pred             ecCCcCcCCcCCHHHHHHhh-CcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhh
Confidence            543       2789999988 778999999999999999976   778889999999999999999665432    1 11


Q ss_pred             ----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC-cHHHHHHHHHHH
Q 013079          238 ----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHR  312 (450)
Q Consensus       238 ----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-~l~~~~~~~~~~  312 (450)
                          .+..+++.|+||.++++|+|+ ||+++++++++.+....... ....+.+.+.++..++...+ ++....+.++++
T Consensus       219 ~~~~~~~vi~~~SfSK~~~l~GlRi-G~~v~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r  296 (384)
T PRK06348        219 LAGMPERTITFGSFSKDFAMTGWRI-GYVIAPDYIIETAKIINEGI-CFSAPTISQRAAIYALKHRDTIVPLIKEEFQKR  296 (384)
T ss_pred             cCCCcCcEEEEecchhccCCccccc-eeeecCHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence                246799999999999999998 99999999988887665421 13344555555554444332 244445556788


Q ss_pred             HHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccc
Q 013079          313 ALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       313 ~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      ++.+.+.|++++. .+..|.                   .|.++|++++. ......|...+..  +.| +.+..|+...
T Consensus       297 ~~~~~~~L~~~~~~~~~~p~-------------------gg~~~~~~~~~~~~~~~~l~~~l~~--~~g-v~v~pg~~f~  354 (384)
T PRK06348        297 LEYAYKRIESIPNLSLHPPK-------------------GSIYAFINIKKTGLSSVEFCEKLLK--EAH-VLVIPGKAFG  354 (384)
T ss_pred             HHHHHHHHhcCCCceeccCC-------------------eeEEEEEecccCCCCHHHHHHHHHH--hCC-EEEcCchhhc
Confidence            8889999987632 333222                   45578888862 2124556655432  123 4555443320


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                           ...++.||||++ . +.+    .+.++++.+
T Consensus       355 ---------------------~~~~~~iRi~~~-~-~~~----~l~~al~~l  379 (384)
T PRK06348        355 ---------------------ESGEGYIRLACT-V-GIE----VLEEAFNRI  379 (384)
T ss_pred             ---------------------cCCCCeEEEEec-C-CHH----HHHHHHHHH
Confidence                                 011478999999 6 333    344444444

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.96  E-value=4e-26  Score=235.44  Aligned_cols=290  Identities=16%  Similarity=0.127  Sum_probs=198.2

Q ss_pred             hHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          100 TVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ...+||+.||++++        .+++++|+|   +++|+.+++++++ ++||.|+++.|.|+.+...+.     ..|.++
T Consensus       116 G~~~LR~aia~~~~~~~g~~~~~~~I~it~G---a~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~-----~~g~~~  187 (481)
T PTZ00377        116 GYPFVRKAVAAFIERRDGVPKDPSDIFLTDG---ASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT-----LLGGKQ  187 (481)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChhhEEEcCC---HHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHH-----HcCCEE
Confidence            35567777777753        357899999   9999999999998 799999999999999988875     356666


Q ss_pred             EEeCCC-------CHHHHHHhhhcC------CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          171 TFVDIS-------DHEMVNSAIVQG------RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       171 ~~v~~~-------d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                      ..++.+       |+++|++++ ++      ++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++
T Consensus       188 v~v~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~  266 (481)
T PTZ00377        188 VPYYLDEEKGWSLDQEELEEAY-EQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYD  266 (481)
T ss_pred             EEEEeccccCCCCCHHHHHHHH-HHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccC
Confidence            666532       679999888 43      7999999999999999987   889999999999999999999665431


Q ss_pred             ---cc--------CCC-------CeEEEeCCCCc-cccCccceEEEEEc---CHHHHHHHHHHhhhhhhccCCCchHHHH
Q 013079          235 ---PA--------RLG-------ADVVVHSISKF-ISGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVA  292 (450)
Q Consensus       235 ---~~--------~~g-------~di~~~S~sK~-~g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~~~~~a  292 (450)
                         +.        .+.       ..++++|+||. ++++|+|+ ||++.   ++++++.+..... . ....+.+.+.++
T Consensus       267 ~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRi-G~~~~~~~p~~li~~l~~~~~-~-~~~~~~~~Q~a~  343 (481)
T PTZ00377        267 GEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRG-GYFELTNIPPEVREQIYKLAS-I-NLCSNVVGQLMT  343 (481)
T ss_pred             CCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCce-EEEEEeCCCHHHHHHHHHHhh-e-ecCCChHHHHHH
Confidence               10        111       35788999997 68899998 99875   8889988877654 1 123455566666


Q ss_pred             HHHHccC----Cc---HH----HHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          293 FELSERI----PH---LG----LRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       293 ~~~~~~~----~~---l~----~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ..++...    ..   ..    ...++++++++.+.+.|+++ +..+..|.                   .|.++|++++
T Consensus       344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~-------------------gg~fl~~~~~  404 (481)
T PTZ00377        344 GLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVE-------------------GAMYAFPRIE  404 (481)
T ss_pred             HHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCC-------------------eeEEEEeecc
Confidence            5555321    11   11    12223578888899999887 33544332                   4557776653


Q ss_pred             --CHH----------HHHHH-HHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-
Q 013079          361 --TEE----------KANRL-MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-  426 (450)
Q Consensus       361 --~~~----------~~~~~-~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-  426 (450)
                        ...          ....+ ...+..   .| +++..|+....                    .-.++++|||++ .. 
T Consensus       405 l~~~~~~~~~~~~~~~~~~~~~~ll~~---~g-V~v~pG~~F~~--------------------~~~~~~~Rls~~-~~~  459 (481)
T PTZ00377        405 LPEKAIQEAKERGLAPDVLYCLELLES---TG-IVVVPGSGFGQ--------------------KPGTYHFRITIL-PPE  459 (481)
T ss_pred             CchhhHHHHHhcCCCcHHHHHHHHHHH---cC-EEEeCCcccCC--------------------CCCCCEEEEEEC-CCH
Confidence              110          01122 233332   23 45555543210                    001468999999 63 


Q ss_pred             -CHHHHHHHHHHHHHHhhhc
Q 013079          427 -TLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       427 -~~~~~i~~l~~al~~~~~~  445 (450)
                       +.++.++.|.+.+.+..++
T Consensus       460 e~l~~~l~rl~~~~~~~~~~  479 (481)
T PTZ00377        460 EQIEEMVKKIKEFHESFMKK  479 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence             4566677777777766544

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.96  E-value=1.8e-26  Score=228.66  Aligned_cols=277  Identities=18%  Similarity=0.231  Sum_probs=203.5

Q ss_pred             ChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           98 NPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      .+...++|+.+|++++.  +++++|+|   ++++++.++.+++++||+|++++|+|+.+...+.     ..|.++..++.
T Consensus        53 ~~~~~~lr~~ia~~~~~~~~~i~~~~G---~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~-----~~g~~~~~~~~  124 (346)
T TIGR01141        53 DPDPAELKQALADYYGVDPEQILLGNG---SDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAK-----IHGAEVVKVPL  124 (346)
T ss_pred             CCCHHHHHHHHHHHhCcChHHEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEecc
Confidence            34458899999999985  56899999   9999999999988999999999999987765553     26788888765


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCCCCCCC--cc----CCCCeE
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLS--PA----RLGADV  242 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~~--~~----~~g~di  242 (450)
                      +     |++++++++ .+++++|++++|+||||.+.+++++.++|+.+  ++++|+|++|..+...  +.    ..+.++
T Consensus       125 ~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i  203 (346)
T TIGR01141       125 DEDGQLDLEDILVAI-DDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLI  203 (346)
T ss_pred             CCCCCCCHHHHHHhc-CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEE
Confidence            3     889999987 78899999999999999999999999999877  9999999998644332  11    124568


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      ++.|+||++|++|.|+ ||++.++++++.+......   ...+.+++.++...+....++....+++.++++.+.+.|++
T Consensus       204 ~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  279 (346)
T TIGR01141       204 VLRTLSKAFGLAGLRI-GYAIANAEIIDALNKVRAP---FNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKK  279 (346)
T ss_pred             EEehhhHhhhchhhhc-eeeecCHHHHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999899998 9999999988888765431   22234444444444433333555566678888999999988


Q ss_pred             C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCC
Q 013079          323 L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS  401 (450)
Q Consensus       323 ~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~  401 (450)
                      + +..+ .|.                   .|+++++.++.  ..+++.+.|...   | +.+..|....           
T Consensus       280 ~~g~~~-~~~-------------------~g~~~~~~~~~--~~~~~~~~L~~~---g-I~v~~g~~f~-----------  322 (346)
T TIGR01141       280 LPGLEV-YPS-------------------DANFVLIRFPR--DADALFEALLEK---G-IIVRDLNSYP-----------  322 (346)
T ss_pred             cCCCEE-CCC-------------------cCCEEEEecCC--CHHHHHHHHHHC---C-eEEEeCCCcC-----------
Confidence            7 4343 222                   35689999875  356677777652   3 5555553210           


Q ss_pred             CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       402 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                                +. ++.+|||++ .   ++.++.+.++|
T Consensus       323 ----------~~-~~~iRls~~-~---~~~i~~~~~~l  345 (346)
T TIGR01141       323 ----------GL-PNCLRITVG-T---REENDRFLAAL  345 (346)
T ss_pred             ----------CC-CCeEEEecC-C---HHHHHHHHHHh
Confidence                      11 578999999 3   34456665554

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK07337 aminotransferase; Validated

Probab=99.95  E-value=8e-26  Score=227.46  Aligned_cols=284  Identities=20%  Similarity=0.256  Sum_probs=199.1

Q ss_pred             hHHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...++++.+|+++    |    .+++++|+|   +++|+.+++..++++||+|++++|+|+++...+.     ..|.++.
T Consensus        68 g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~  139 (388)
T PRK07337         68 GLAPLREAIAAWYARRFGLDVAPERIVVTAG---ASAALLLACLALVERGDEVLMPDPSYPCNRHFVA-----AAEGRPV  139 (388)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChHhEEEecC---cHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEE
Confidence            3567888888875    3    356899999   9999999999999999999999999999887764     2466666


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A  236 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~  236 (450)
                      .++.+       |++++++.+ ++++++|++++|+||||.+.+   +++|+++|+++++++|+|++|..+.++.     .
T Consensus       140 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~  218 (388)
T PRK07337        140 LVPSGPAERFQLTAADVEAAW-GERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSAL  218 (388)
T ss_pred             EeecCCccCCcCCHHHHHhhc-CccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChh
Confidence            66542       688999988 788999999999999999976   6788999999999999999986554321     1


Q ss_pred             CCC-CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHHHHHHHHHHHH
Q 013079          237 RLG-ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRA  313 (450)
Q Consensus       237 ~~g-~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~  313 (450)
                      .++ ..+++.|+||.+|++|+|+ ||++.++++++.+....... ....+.+.+.++..++..  ...+.+..+++++++
T Consensus       219 ~~~~~vi~~~S~SK~~~~~G~Ri-G~~~~~~~l~~~l~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r  296 (388)
T PRK07337        219 SLGDDVITINSFSKYFNMTGWRL-GWLVVPEALVGTFEKLAQNL-FICASALAQHAALACFEPDTLAIYERRRAEFKRRR  296 (388)
T ss_pred             hccCCEEEEEechhhcCCchhhe-eeeecCHHHHHHHHHHHHHh-ccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence            222 3467899999999999998 99999999988887665421 123344455554444432  233444455678888


Q ss_pred             HHHHHHHHhCCCee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHh-hccccccccccccc
Q 013079          314 LIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL-QNYAQFGFMAVSLG  386 (450)
Q Consensus       314 ~~l~~~L~~~~~~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~~l-~~~~~~g~i~vs~G  386 (450)
                      +.+.+.|++++..+ ..|.                   .|.++|++++..     .....|...+ ..   .| +.+..|
T Consensus       297 ~~~~~~L~~~~~~~~~~p~-------------------~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~---~g-v~v~pg  353 (388)
T PRK07337        297 DFIVPALESLGFKVPVMPD-------------------GAFYVYADCRGVAHPAAGDSAALTQAMLHD---AG-VVLVPG  353 (388)
T ss_pred             HHHHHHHHhcCCccccCCC-------------------eeEEEEEecccccCCCCCCHHHHHHHHHHh---CC-EEEeCc
Confidence            99999998876533 2332                   467899998631     1244565553 32   22 455555


Q ss_pred             cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      +.+..                    .-.++++|||++ . +.    +.|.++++++.
T Consensus       354 ~~f~~--------------------~~~~~~~Ri~~~-~-~~----~~l~~~l~rl~  384 (388)
T PRK07337        354 RDFGP--------------------HAPRDYIRLSYA-T-SM----SRLEEAVARLG  384 (388)
T ss_pred             hhhCC--------------------CCCCCEEEEEec-C-CH----HHHHHHHHHHH
Confidence            33210                    001479999999 6 33    34445555443

>PRK09148 aminotransferase; Validated

Probab=99.95  E-value=7.8e-26  Score=228.59  Aligned_cols=232  Identities=15%  Similarity=0.123  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++|+.+|+++    |    .+ ++++|+|   +++++.+++..++++||+|++++|+|+.+...+.     ..|.++.
T Consensus        70 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~G---~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~-----~~g~~v~  141 (405)
T PRK09148         70 IPGLRRAQAAYYARRFGVKLNPDTQVVATLG---SKEGFANMAQAITAPGDVILCPNPSYPIHAFGFI-----MAGGVIR  141 (405)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEcCC---hHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHH-----hcCCEEE
Confidence            345667777665    3    34 6899999   9999999999999999999999999999877664     3688887


Q ss_pred             EeCCC----CHHHHHHhhh--cCCceEEEEecCCCCcccccCH---HHHHHHHHhcCCEEEEeCCCCCCCCC------cc
Q 013079          172 FVDIS----DHEMVNSAIV--QGRTKVLYFESISNPTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLS------PA  236 (450)
Q Consensus       172 ~v~~~----d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~l---~~I~~la~~~gi~livD~~~~~~~~~------~~  236 (450)
                      .++.+    +++++++++.  .+++++|++++||||||.+.+.   ++|+++|+++|+++|+|++|..+.++      ..
T Consensus       142 ~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~  221 (405)
T PRK09148        142 SVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVL  221 (405)
T ss_pred             EEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChh
Confidence            77653    2334444441  3688999999999999999875   68889999999999999999554321      11


Q ss_pred             CC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHHHH
Q 013079          237 RL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCH  311 (450)
Q Consensus       237 ~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~  311 (450)
                      .+    +..++++|+||.+|.+|+|+ ||+++++++++.+...+.. .....+.+.+.++..++... .++....+.+++
T Consensus       222 ~~~~~~~~~i~~~SfSK~~~~pGlR~-G~~v~~~~~i~~l~~~~~~-~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~  299 (405)
T PRK09148        222 QVPGAKDVTVEFTSMSKTFSMAGWRM-GFAVGNERLIAALTRVKSY-LDYGAFTPIQVAATAALNGPQDCIAEMRELYKK  299 (405)
T ss_pred             hCCCccCcEEEEeccccccCCcchhe-eeeeCCHHHHHHHHHHHHH-hccCCChHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            11    34578999999999999999 9999999999988766541 11233445555555555432 345555566788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      +++.+.+.|++++..+..|.                   .|.++|+.++.
T Consensus       300 ~r~~l~~~L~~~~~~~~~p~-------------------~g~f~~~~l~~  330 (405)
T PRK09148        300 RRDVLVESFGRAGWDIPPPA-------------------ASMFAWAPIPE  330 (405)
T ss_pred             HHHHHHHHHHHcCCccCCCC-------------------eeEEEEEECCC
Confidence            89999999988765433332                   46689999873

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.6e-26  Score=230.91  Aligned_cols=219  Identities=16%  Similarity=0.163  Sum_probs=168.0

Q ss_pred             ChhHHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           98 NPTVLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      .+....||+.||+++    |    .+++++|+|   +++++.+++.+++++||.|+++.|.|+.+...+.     ..|.+
T Consensus        64 ~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G---~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~-----~~g~~  135 (368)
T PRK03317         64 DRDAVALRADLAAYLTAQTGVGLTVENVWAANG---SNEILQQLLQAFGGPGRTALGFVPSYSMHPIIAR-----GTHTE  135 (368)
T ss_pred             CCchHHHHHHHHHHhhhhccCCCChhhEEECCC---HHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----hcCCe
Confidence            345677888888887    3    356899999   9999999999999999999999999999887764     25666


Q ss_pred             EEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc----cC---
Q 013079          170 TTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----AR---  237 (450)
Q Consensus       170 v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~----~~---  237 (450)
                      +..++.+     |++++++++...++++|++++|+||||.+.+.+++.++++..++++|+||+|..+....    ..   
T Consensus       136 ~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~  215 (368)
T PRK03317        136 WVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLP  215 (368)
T ss_pred             eEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHH
Confidence            6655432     78999998844578999999999999999999999999999899999999996653221    11   


Q ss_pred             -CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079          238 -LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       238 -~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l  316 (450)
                       .+..+++.|+||.+|.+|+|+ ||+++++++++.+...+.   ....+.+.+.++..++...+.+.+..+++.++++.+
T Consensus       216 ~~~~~i~~~SfSK~~g~~GlRi-G~~~~~~~~~~~l~~~~~---~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l  291 (368)
T PRK03317        216 EYPRLVVSRTMSKAFAFAGGRL-GYLAAAPAVVDALRLVRL---PYHLSAVTQAAARAALRHADELLASVAALRAERDRV  291 (368)
T ss_pred             hCCCEEEEEechhhhccchhhh-hhhhCCHHHHHHHHhcCC---CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence             134688999999999999999 999999999988875543   123344444444444433334445556677888889


Q ss_pred             HHHHHhCCCeee
Q 013079          317 ARRMKKLGLKVL  328 (450)
Q Consensus       317 ~~~L~~~~~~v~  328 (450)
                      .+.|++++..+.
T Consensus       292 ~~~L~~~g~~~~  303 (368)
T PRK03317        292 VAWLRELGLRVA  303 (368)
T ss_pred             HHHHHHCCCEeC
Confidence            999988776543

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.95  E-value=4.7e-26  Score=224.00  Aligned_cols=269  Identities=18%  Similarity=0.175  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHH
Q 013079          102 LNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV  181 (450)
Q Consensus       102 ~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l  181 (450)
                      ..|++.||+.++.+++++|+|   +++++.+++.  +.+||+|++++|+|+.+...++     ..|.++..++.+   ++
T Consensus        52 ~~Lr~~ia~~~~~~~I~it~G---s~~al~~~~~--~~~gd~v~v~~P~y~~~~~~~~-----~~g~~~~~v~~~---~~  118 (330)
T PRK05664         52 DGLEAAARAYYGAPQLLPVAG---SQAAIQALPR--LRAPGRVGVLSPCYAEHAHAWR-----RAGHQVRELDEA---EV  118 (330)
T ss_pred             HHHHHHHHHHhCCCCEEECcC---HHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHH-----HcCCeEEEechh---hH
Confidence            689999999999999999999   9999998753  5789999999999999988875     468888888753   45


Q ss_pred             HHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC--CccC---CCCeEEEeCCCCcccc
Q 013079          182 NSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL--SPAR---LGADVVVHSISKFISG  253 (450)
Q Consensus       182 ~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~--~~~~---~g~di~~~S~sK~~g~  253 (450)
                      ++++ + +++++++++||||||.+.+   +++|+++|+++|+++|+||+|..+..  +...   .+..++++|+||.+|.
T Consensus       119 ~~~~-~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl  196 (330)
T PRK05664        119 EAAL-D-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGL  196 (330)
T ss_pred             hhhh-c-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccC
Confidence            5656 3 6788999999999999987   55666677889999999999944421  1112   2356999999999999


Q ss_pred             CccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCC
Q 013079          254 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE  333 (450)
Q Consensus       254 ~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~  333 (450)
                      +|+|+ ||+++++++++.+......   ...+.+.+.++..++..........+++.++++.+.+.|++++..   |.  
T Consensus       197 ~GlRi-G~~v~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~---~~--  267 (330)
T PRK05664        197 AGARL-GFVLAEPALLRALAELLGP---WTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRHGLT---PA--  267 (330)
T ss_pred             CCcce-EEEEeCHHHHHHHHHhcCC---CCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHCCCc---cc--
Confidence            99999 9999999999888766441   122334444444444443444445566788899999999887532   11  


Q ss_pred             CCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCC
Q 013079          334 DHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI  413 (450)
Q Consensus       334 ~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~  413 (450)
                                     .|.+.++++.+++   ...+.+.|...   | +.+..   +                      + 
T Consensus       268 ---------------~~~~~f~~~~~~~---~~~~~~~l~~~---g-i~v~~---f----------------------~-  299 (330)
T PRK05664        268 ---------------GGCALFQWVRTED---AAALHEFLARR---G-ILTRL---F----------------------E-  299 (330)
T ss_pred             ---------------CCcceEEEEecCC---HHHHHHHHHHC---C-eEEEE---C----------------------C-
Confidence                           0233567777653   35566666542   2 33321   0                      0 


Q ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          414 SAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       414 ~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      ..+.||||+| .  +.+..+.|.++|+.+.++
T Consensus       300 ~~~~iRis~~-~--~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        300 QPASLRFGLP-A--DEADWARLDQALLAYRKE  328 (330)
T ss_pred             CCCeEEEECC-C--CHHHHHHHHHHHHHHHhh
Confidence            1368999999 5  345577777887777543

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.95  E-value=1.2e-25  Score=212.58  Aligned_cols=296  Identities=19%  Similarity=0.180  Sum_probs=211.5

Q ss_pred             CCccccCCCChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCC
Q 013079           89 DFFIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus        89 ~~~~y~r~~~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      +.|.|+.......+.+.....+..+    .+.++|+++   ..-++.++++++.++||.|++..|.|+++......    
T Consensus        54 GvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~---VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~----  126 (388)
T COG1168          54 GVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPG---VVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKL----  126 (388)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCc---chHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhh----
Confidence            4456774445577888888888766    356899999   99999999999999999999999999999988862    


Q ss_pred             ccCeeEEEeCCC--------CHHHHHHhhhcCCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          165 ACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       165 ~~g~~v~~v~~~--------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                       .|-++...|..        |.++|++++.+++++++++|+||||||++.   .+.+|.++|++||+.+|+||++.++.+
T Consensus       127 -n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~  205 (388)
T COG1168         127 -NGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVL  205 (388)
T ss_pred             -cCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccc
Confidence             45555554432        999999999667789999999999999995   588999999999999999999866654


Q ss_pred             Cc------cCC-----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccC-CCchHHHHHHHHc-cCC
Q 013079          234 SP------ARL-----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG-PTMNPKVAFELSE-RIP  300 (450)
Q Consensus       234 ~~------~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g-~~~~~~~a~~~~~-~~~  300 (450)
                      ..      ..+     ...+.+.|.||.|+.+|+.++-+++.++++..+......... ..+ +.++..+...+.+ +..
T Consensus       206 ~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~-~~~~n~lg~~A~~aAY~~G~~  284 (388)
T COG1168         206 GGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNG-LHGPSALGIIATEAAYNQGEP  284 (388)
T ss_pred             cCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHhchH
Confidence            32      111     356889999999999999874444566666555433322111 233 3333333333333 556


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhC-C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHH-HHHHHhh
Q 013079          301 HLGLRMKEHCHRALIFARRMKKL-G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKAN-RLMNYLQ  373 (450)
Q Consensus       301 ~l~~~~~~~~~~~~~l~~~L~~~-~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~-~~~~~l~  373 (450)
                      ++.+..+.++.|++++.+.|.++ | .++..|.                   ...++|+++.    +.+... .+++..+
T Consensus       285 WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~-------------------gTYL~WLD~r~l~l~d~~l~~~ll~~ak  345 (388)
T COG1168         285 WLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQ-------------------GTYLAWLDCRELGLDDSELAEFLLEEAK  345 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCC-------------------CceeeeeeccccCCChHHHHHHHHHhhc
Confidence            78877778899999999999886 3 3776664                   4568999987    222233 3344433


Q ss_pred             ccccccccccccccccccccccccccCCCCCHHHHHhcCC-CCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079          374 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI-SAGLVRMSVGYL--GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       374 ~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~-~~~~iRiS~g~~--~~~~~~i~~l~~al~~~  442 (450)
                             ++++.|...                      |. ..+++|+.++ .  ...++.++.|.++|+.+
T Consensus       346 -------Val~~G~~F----------------------G~~g~gf~RlN~a-cpr~~L~eal~ri~~al~~~  387 (388)
T COG1168         346 -------VALSPGSTF----------------------GEEGSGFVRLNFA-CPRAILEEALERLKRALKKR  387 (388)
T ss_pred             -------EeccCCCcc----------------------CcCCCceEEEecC-CCHHHHHHHHHHHHHHHhcc
Confidence                   577777432                      22 2589999999 5  45666666776666543

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.95  E-value=6.1e-26  Score=229.29  Aligned_cols=214  Identities=17%  Similarity=0.164  Sum_probs=160.3

Q ss_pred             hhHHHHHHHHHHHhCC----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           99 PTVLNLSRQMAALEGT----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ..++.+.+.+++..|.    +++++|+|   +++|++.++.+++.+||+|++++|.|..+...+..     .+..+..++
T Consensus        74 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G---~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~-----~~~~~~~v~  145 (402)
T PRK06107         74 ALRKAIIAKLERRNGLHYADNEITVGGG---AKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLA-----NDGTPVIVA  145 (402)
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEeCC---HHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHH-----cCCEEEEec
Confidence            4455666666665553    56899999   99999999998899999999999999888766531     333444443


Q ss_pred             C-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhc-CCEEEEeCCCCCCCCCc------cC
Q 013079          175 I-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDK-GVTVVVDNTFSPLVLSP------AR  237 (450)
Q Consensus       175 ~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~-gi~livD~~~~~~~~~~------~~  237 (450)
                      .       .|++++++++ .+++++|++++|+||||.+.+   +++|+++|+++ ++++|+|++|..+.++.      ..
T Consensus       146 ~~~~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~  224 (402)
T PRK06107        146 CPEEQGFKLTPEALEAAI-TPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLA  224 (402)
T ss_pred             CCcccCCCCCHHHHHhhc-CcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHH
Confidence            2       2678999988 778999999999999999976   56778889998 99999999996553321      11


Q ss_pred             -----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHHHHHHHHH
Q 013079          238 -----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCH  311 (450)
Q Consensus       238 -----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~~~~~  311 (450)
                           .+..++++|+||.++.+|+|+ ||+++++++++.+...... .....+.+.+.++..++. ...++....+.+.+
T Consensus       225 ~~~~~~~~vi~~~S~SK~~~~pGlRi-G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~  302 (402)
T PRK06107        225 AAPELRDRVLVTNGVSKTYAMTGWRI-GYAAGPADLIAAINKLQSQ-SSSCPSSISQAAAAAALNGDQSFVTESVAVYKQ  302 (402)
T ss_pred             hCcCccCCEEEEeccchhhcCcccce-eeeecCHHHHHHHHHHHHh-cccCCChHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence                 135799999999999999999 9999999999888776541 113344455555554543 23445556666788


Q ss_pred             HHHHHHHHHHhC
Q 013079          312 RALIFARRMKKL  323 (450)
Q Consensus       312 ~~~~l~~~L~~~  323 (450)
                      +++.+.+.|+++
T Consensus       303 ~~~~~~~~L~~~  314 (402)
T PRK06107        303 RRDYALALLNAI  314 (402)
T ss_pred             HHHHHHHHHhcC
Confidence            899999999876

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.95  E-value=5.9e-26  Score=228.79  Aligned_cols=252  Identities=18%  Similarity=0.192  Sum_probs=180.6

Q ss_pred             HHHHHHHHHHHh----C------CC-eEEEecChHHHHHHHHHHHHHhccCCCE--EEEeCCCchhHHHHHHHhCCCccC
Q 013079          101 VLNLSRQMAALE----G------TE-AAYCTASDKAGMSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus       101 ~~~l~~~iA~l~----g------~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~--Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      ..++|+.+|+++    |      .+ .+++|+|   +++++.+++..++++||+  |+++.|.|..+...+.     ..|
T Consensus        66 ~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~G---a~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~-----~~g  137 (393)
T TIGR03538        66 LPELRQAIARWLERRFDLPTGVDPERHVLPVNG---TREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAAL-----LAG  137 (393)
T ss_pred             CHHHHHHHHHHHHHhhCCcccCCCCceEEECCC---cHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHH-----hcC
Confidence            456777777765    2      33 5789999   999999999999999986  8999999999887664     367


Q ss_pred             eeEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013079          168 ITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---  234 (450)
Q Consensus       168 ~~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---  234 (450)
                      .++..++.+       |++++++++ .+++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++   
T Consensus       138 ~~~~~v~~~~~~~~~~d~~~l~~~~-~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~  216 (393)
T TIGR03538       138 AEPYFLNCTAENGFLPDFDAVPESV-WRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGN  216 (393)
T ss_pred             CeEEEeeccccCCCCCCHHHHHHHH-hhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCC
Confidence            777777642       678898888 668999999999999999987   788999999999999999999555332   


Q ss_pred             -cc------------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCc
Q 013079          235 -PA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH  301 (450)
Q Consensus       235 -~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~  301 (450)
                       +.            .....+++.|+||.++++|+|+ ||+++++++++.+...... .....+.+.+.++...+...++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRv-G~~i~~~~l~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~~~  294 (393)
T TIGR03538       217 PPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRS-GFVAGDAEILKAFLRYRTY-HGCAMPIPTQLASIAAWNDEQH  294 (393)
T ss_pred             CCcCHHHhcccccccccccEEEEecchhhcCCcccce-EEEecCHHHHHHHHHHHHh-hccCcCHHHHHHHHHHhcChHH
Confidence             10            1234699999999999999999 9999999998888765541 1112233344444333333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013079          302 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM  381 (450)
Q Consensus       302 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i  381 (450)
                      +....+.++++++.+.+.|+++ ..+..|                   ..|.++|+.++.  ....|.+.+..  +.| +
T Consensus       295 ~~~~~~~~~~~~~~~~~~L~~~-~~~~~p-------------------~gg~f~~~~~~~--~~~~~~~~l~~--~~g-V  349 (393)
T TIGR03538       295 VRENRALYREKFAAVLEILGQV-LDLELP-------------------DAGFYLWPKVPG--DDEAFARALYE--EEN-V  349 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-CcccCC-------------------CeeEEEEEECCC--CHHHHHHHHHH--HCC-E
Confidence            5555666788888898988764 222223                   257799999971  13456666532  123 5


Q ss_pred             ccccccc
Q 013079          382 AVSLGYY  388 (450)
Q Consensus       382 ~vs~G~~  388 (450)
                      .+..|+.
T Consensus       350 ~v~pg~~  356 (393)
T TIGR03538       350 TVLPGRF  356 (393)
T ss_pred             EEeCCcc
Confidence            6665643

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=4.5e-26  Score=227.87  Aligned_cols=275  Identities=17%  Similarity=0.186  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC---
Q 013079          102 LNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS---  176 (450)
Q Consensus       102 ~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~---  176 (450)
                      ..+++.||++++.  +++++|+|   +++++++++.+++++||+|+++.|+|+.+...+.     ..|.++..++.+   
T Consensus        74 ~~lr~~ia~~~~~~~~~i~~t~G---~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~  145 (371)
T PRK05166         74 RALREAIAARTGVPADRIILGNG---SEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPT-----MMGARVERVTVTPDL  145 (371)
T ss_pred             HHHHHHHHHHhCcCHHHEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCeEEEeecCCCC
Confidence            4899999999986  46899999   9999999999999999999999999998877664     368888877654   


Q ss_pred             --CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCC-----cc----CC-CCeE
Q 013079          177 --DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLS-----PA----RL-GADV  242 (450)
Q Consensus       177 --d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~-----~~----~~-g~di  242 (450)
                        |++++++++ ++++++|++++||||||.+.+.+++.++++.  .++++|+|++|..+...     ..    .. ...+
T Consensus       146 ~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi  224 (371)
T PRK05166        146 GFDLDALCAAV-ARAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWI  224 (371)
T ss_pred             CCCHHHHHHhh-hcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEE
Confidence              789999988 7789999999999999999987777666653  48899999998544321     11    11 2568


Q ss_pred             EEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013079          243 VVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~  321 (450)
                      ++.|+||.+|.+|+|+ ||++. ++++.+.+...+..   ...+.+.+.++..++...+++....+.+.++++.+.+.|+
T Consensus       225 ~i~SfSK~~~l~GlRi-G~~i~~~~~l~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~  300 (371)
T PRK05166        225 VLRTFSKAYGLAGLRV-GYGLVSDPELVGLLDRVRTP---FNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELA  300 (371)
T ss_pred             EEeechHhhhcchhhe-eeeecCCHHHHHHHHHhccC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999 99764 77888877655431   2223334434444443334555556677888899999999


Q ss_pred             hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCC
Q 013079          322 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS  401 (450)
Q Consensus       322 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~  401 (450)
                      +++..+ .|.                   .|.++|+.++..  ...|.+.+...   | +.+..|..      +      
T Consensus       301 ~~g~~~-~p~-------------------~g~fl~~~~~~~--~~~l~~~l~~~---g-i~v~p~~~------~------  342 (371)
T PRK05166        301 EMGYRI-APS-------------------RANFLFFDARRP--ASAVAEALLRQ---G-VIVKPWKQ------P------  342 (371)
T ss_pred             HCcCee-CCC-------------------cCCEEEEeCCCC--HHHHHHHHHHC---C-eEEecCCC------C------
Confidence            876543 232                   356888887632  34566666542   3 44444421      0      


Q ss_pred             CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       402 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                + .+++||||++ ..   +..+.|.++|+.+
T Consensus       343 ----------~-~~~~iRi~~~-~~---~~~~~l~~~l~~i  368 (371)
T PRK05166        343 ----------G-FETFIRVSIG-SP---EENDHFVAALDKV  368 (371)
T ss_pred             ----------C-CCCeEEEEcC-CH---HHHHHHHHHHHHH
Confidence                      1 1478999999 52   2244555555544

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.95  E-value=8.8e-26  Score=228.18  Aligned_cols=270  Identities=15%  Similarity=0.164  Sum_probs=190.0

Q ss_pred             ChhHHHHHHHHHHHhCC--------CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           98 NPTVLNLSRQMAALEGT--------EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~--------~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ......+|+.+|++++.        +++++|+|   +++|+.+++.+++.+||+|++++|+|..+...+.     ..|.+
T Consensus        72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G---~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~  143 (403)
T TIGR01265        72 SVGALAAREAVAEYLSSDLPGKLTADDVVLTSG---CSQAIEICIEALANPGANILVPRPGFPLYDTRAA-----FSGLE  143 (403)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC---hHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCE
Confidence            34467788999988863        46899999   9999999999999999999999999998876654     25777


Q ss_pred             EEEeCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013079          170 TTFVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----  235 (450)
Q Consensus       170 v~~v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----  235 (450)
                      +..++.       .|++++++++ ++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|..+.++.    
T Consensus       144 ~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~  222 (403)
T TIGR01265       144 VRLYDLLPEKDWEIDLDGLEALA-DEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFI  222 (403)
T ss_pred             EEEecCCcccCCccCHHHHHHHh-CcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCcc
Confidence            777653       2789999988 788999999999999999976   8899999999999999999996664321    


Q ss_pred             --cCC---CCeEEEeCCCCccccCccceEEEEEcC--HH-----HHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCc
Q 013079          236 --ARL---GADVVVHSISKFISGGADIIAGAVCGP--AN-----LVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPH  301 (450)
Q Consensus       236 --~~~---g~di~~~S~sK~~g~~g~~igG~l~~~--~~-----~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~  301 (450)
                        ..+   ...++++|+||.++.+|.|+ ||++.+  ++     +++.+......  ....+.+.+.++..++..  ..+
T Consensus       223 ~~~~~~~~~~vi~~~S~SK~~~~pGlRi-G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~  299 (403)
T TIGR01265       223 PMASFASIVPVLSLGGISKRWVVPGWRL-GWIIIHDPHGIFRDTVLQGLKNLLQR--ILGPATIVQGALPDILENTPQEF  299 (403)
T ss_pred             chhhhccCCcEEEEeecccccCCCcceE-EEEEEeCchhhhHHHHHHHHHHHhhh--hcCCChHHHHHHHHHHHhChHHH
Confidence              111   24689999999999999999 998763  23     33333333220  122333444444444432  234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHh-hc
Q 013079          302 LGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYL-QN  374 (450)
Q Consensus       302 l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~~l-~~  374 (450)
                      +.+..+++.++++.+.+.|+.++ ..+..|.                   .|.++|++++..     .....+...+ +.
T Consensus       300 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~-------------------~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~  360 (403)
T TIGR01265       300 FDGKISVLKSNAELCYEELKDIPGLVCPKPE-------------------GAMYLMVKLELELFPEIKDDVDFCEKLVRE  360 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCceecCCC-------------------ceeEEEEeccccccCCCCCHHHHHHHHHHh
Confidence            55566677888899999998763 3433332                   577899998632     1244565554 33


Q ss_pred             cccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079          375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG  426 (450)
Q Consensus       375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~  426 (450)
                         .| +.+..|+.+                      + .+++||||++ ..
T Consensus       361 ---~g-v~v~pg~~f----------------------~-~~~~iRis~~-~~  384 (403)
T TIGR01265       361 ---ES-VICLPGSAF----------------------G-LPNWVRITIT-VP  384 (403)
T ss_pred             ---CC-EEEeCcccc----------------------C-CCCeEEEEec-CC
Confidence               22 455544321                      1 1478999999 63

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=2e-26  Score=229.72  Aligned_cols=278  Identities=16%  Similarity=0.203  Sum_probs=194.8

Q ss_pred             hhHHHHHHHHHHHhCC--CeEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           99 PTVLNLSRQMAALEGT--EAAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~--~~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      +...++++.+|++++.  +.+++ |+|   +++++++++..++++||+|+++.|.|+.+...++     ..|.++..++.
T Consensus        69 ~~~~~lr~~ia~~~~~~~~~i~~~~~G---a~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~-----~~g~~~~~~~~  140 (361)
T PRK00950         69 PDAPELREALSKYTGVPVENIIVGGDG---MDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAK-----AHGAKPVYAKR  140 (361)
T ss_pred             CCHHHHHHHHHHHhCCCHHHEEEeCCC---HHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEeec
Confidence            3458899999999986  45777 677   8889999998888999999999999998776654     26778877753


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-Ccc----CCCCeEEEe
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-SPA----RLGADVVVH  245 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-~~~----~~g~di~~~  245 (450)
                      +     |++++++++ ++++++|++++|+||||.+.+++++.++|+++|+++|+|++|..+.. +..    ..+..++++
T Consensus       141 ~~~~~~~~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~  219 (361)
T PRK00950        141 EEDFSLDVDSVLNAI-TEKTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGR  219 (361)
T ss_pred             CCCCCcCHHHHHHHh-ccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEE
Confidence            2     788999988 77899999999999999999999999999999999999999955431 111    224568899


Q ss_pred             CCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          246 SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       246 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      |+||.+|++|+|+ ||+++++++++.+......   ...+.+.+..+..++...+++.+..++++++++.+.+.|+   .
T Consensus       220 S~SK~~g~~GlRi-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~---~  292 (361)
T PRK00950        220 TFSKVFGLAGLRI-GYGFVPEWLIDYYMRAKTP---FSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP---F  292 (361)
T ss_pred             eehHhhcCchhhc-chhcCCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC---e
Confidence            9999999999998 9999999998888765541   2223333434433443333344444455666666666654   2


Q ss_pred             eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCH
Q 013079          326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNA  405 (450)
Q Consensus       326 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~  405 (450)
                      .+ .|.                   .|+++++.++.. ....|.+.|...   | +.+..|...                
T Consensus       293 ~~-~~~-------------------~~~~i~~~~~~~-~~~~~~~~l~~~---g-v~v~~~~~f----------------  331 (361)
T PRK00950        293 KV-YPS-------------------EANFVLVDVTPM-TAKEFCEELLKR---G-VIVRDCTSF----------------  331 (361)
T ss_pred             eE-CCC-------------------cceEEEEECCCC-CHHHHHHHHHHC---C-EEEeeCCcc----------------
Confidence            22 221                   356888888532 356677776542   3 444443210                


Q ss_pred             HHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          406 EEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       406 ~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                           .+..+++||||++ .   .+.++.+.++|+++
T Consensus       332 -----~~~~~~~lRis~~-~---~~~~~~l~~~L~~i  359 (361)
T PRK00950        332 -----RGLGDYYIRVSIG-T---FEENERFLEILKEI  359 (361)
T ss_pred             -----CCCCCCeEEEECC-C---HHHHHHHHHHHHHH
Confidence                 0112578999999 3   22455555555543

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.95  E-value=3.1e-25  Score=224.16  Aligned_cols=242  Identities=12%  Similarity=0.092  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...+|+.+|+++    |    .+ ++++|+|   +++|+.+++.+++++||.|++++|+|+.+...+.     ..|.++.
T Consensus        73 ~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G---~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~  144 (403)
T PRK08636         73 IYKLRLAICNWYKRKYNVDLDPETEVVATMG---SKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFI-----LAGGNVH  144 (403)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCeEEECCC---hHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----hcCCEEE
Confidence            345666666654    4    34 6899999   9999999999999999999999999999988775     3577777


Q ss_pred             EeCCC-------CHH----HHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079          172 FVDIS-------DHE----MVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       172 ~v~~~-------d~~----~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~  235 (450)
                      .++.+       |++    .+++++.  ..+++++++++||||||.+.+   +++|+++|+++++++|+|++|..+.++.
T Consensus       145 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~  224 (403)
T PRK08636        145 KMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG  224 (403)
T ss_pred             EEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCC
Confidence            66531       444    4455552  257899999999999999976   6788899999999999999996554321


Q ss_pred             ------cCC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHH
Q 013079          236 ------ARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGL  304 (450)
Q Consensus       236 ------~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~  304 (450)
                            ..+    +..++++|+||.+|.+|+|+ ||+++++++++.+....... ....+++.+..+..++... +++.+
T Consensus       225 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi-G~iv~~~~li~~~~~~~~~~-~~~~~~~~q~~~~~~~~~~~~~~~~  302 (403)
T PRK08636        225 YKTPSILEVEGAKDVAVESYTLSKSYNMAGWRV-GFVVGNKKLVGALKKIKSWL-DYGMFTPIQVAATIALDGDQSCVEE  302 (403)
T ss_pred             CCCCChhcCCCccccEEEEEecccccCCcccee-eeeeCCHHHHHHHHHHHHHh-cccCChHHHHHHHHHHhCcHHHHHH
Confidence                  111    24567899999999999998 99999999998887654411 1223344454444444322 33444


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---HHHHHHHHH
Q 013079          305 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---EKANRLMNY  371 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---~~~~~~~~~  371 (450)
                      ..+.+.++++.+.+.|++.+..+..|.                   .|.++|+.++..   .....|...
T Consensus       303 ~~~~~~~~~~~l~~~L~~~~~~~~~p~-------------------~g~~~~~~l~~~~~~~~~~~l~~~  353 (403)
T PRK08636        303 IRETYRKRRDVLIESFANAGWELQKPR-------------------ASMFVWAKIPEPARHLGSLEFSKQ  353 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcccCCC-------------------cceEEEEECCCccCCCCHHHHHHH
Confidence            555678888999999988765443332                   577899999732   113456554

>PRK09265 aminotransferase AlaT; Validated

Probab=99.95  E-value=2e-25  Score=225.67  Aligned_cols=283  Identities=13%  Similarity=0.095  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHHh------C--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE------G--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~------g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ...|++.+|+++      +  .+++++|+|   +++++.+++..++++||+|++++|+|..+...+.     ..|..+..
T Consensus        74 ~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G---~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~v~  145 (404)
T PRK09265         74 LFSARKAIMQYYQQKGIPDVDVDDIYIGNG---VSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVS-----LSGGKPVH  145 (404)
T ss_pred             cHHHHHHHHHHHhccCCCCCCcccEEEeCC---hHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHH-----HcCCEEEE
Confidence            457888888876      3  356899999   9999999999999999999999999998887764     24555554


Q ss_pred             eCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------c
Q 013079          173 VDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------A  236 (450)
Q Consensus       173 v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------~  236 (450)
                      ++.       .|++++++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.++.      .
T Consensus       146 ~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  224 (404)
T PRK09265        146 YLCDEEAGWFPDLDDIRSKI-TPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIA  224 (404)
T ss_pred             EecccccCCCCCHHHHHHhc-cccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHH
Confidence            432       2688999988 778999999999999999988   8899999999999999999986553321      1


Q ss_pred             CC---CCeEEEeCCCCccccCccceEEEEEc--CHHH----HHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHH--
Q 013079          237 RL---GADVVVHSISKFISGGADIIAGAVCG--PANL----VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR--  305 (450)
Q Consensus       237 ~~---g~di~~~S~sK~~g~~g~~igG~l~~--~~~~----~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~--  305 (450)
                      .+   ...+++.|+||.++++|+|+ ||++.  ++.+    ++.+.....  .....+.+.+.++..++...+.....  
T Consensus       225 ~~~~~~~vi~~~S~SK~~~~pGlRi-G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~  301 (404)
T PRK09265        225 SLAPDLLCVTFNGLSKAYRVAGFRV-GWMVLSGPKKHAKGYIEGLDMLAS--MRLCANVPAQHAIQTALGGYQSINELIL  301 (404)
T ss_pred             HcCCCceEEEEecchhhccCcccce-EEEEEeCchHHHHHHHHHHHHHhc--cccCCCcHHHHHHHHHhcCchhHHHHHH
Confidence            11   13578899999999999999 99874  4443    333322111  11233445555555555433333222  


Q ss_pred             -HHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHhhccccc
Q 013079          306 -MKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQNYAQF  378 (450)
Q Consensus       306 -~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~~l~~~~~~  378 (450)
                       .+++.++++.+.+.|++++ ..+..|                   ..|.++|+.++..     ...+.+.+.+..   .
T Consensus       302 ~~~~~~~~r~~~~~~L~~~~~~~~~~p-------------------~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~---~  359 (404)
T PRK09265        302 PGGRLYEQRDRAWELLNAIPGVSCVKP-------------------KGALYAFPKLDPKVYPIHDDEQFVLDLLLQ---E  359 (404)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccCC-------------------CcceEEEEEecccccCCCCHHHHHHHHHHh---C
Confidence             2356677888888898763 233333                   2567889888632     123344454543   2


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHH
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALS  440 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~  440 (450)
                      | +.+..|+.+.                     ...++++||+++ .  +..++.++.|.+++.
T Consensus       360 g-v~v~pg~~F~---------------------~~~~~~~Ri~~~-~~~e~l~~~l~rl~~~l~  400 (404)
T PRK09265        360 K-VLLVQGTGFN---------------------WPEPDHFRIVTL-PRVDDLEEAIGRIGRFLS  400 (404)
T ss_pred             C-EEEECchhhC---------------------CCCCCeEEEEeC-CCHHHHHHHHHHHHHHHH
Confidence            3 4544443210                     012478999998 5  234444555555444

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.2e-25  Score=226.83  Aligned_cols=241  Identities=20%  Similarity=0.272  Sum_probs=176.7

Q ss_pred             hHHHHHHHHHHHh-------CCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          100 TVLNLSRQMAALE-------GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       100 ~~~~l~~~iA~l~-------g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ...++|+.+|+++       ..+++++|+|   +++|+++++..++++||+|++++|.|..+...++     ..|.++..
T Consensus        67 g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~  138 (397)
T PRK07568         67 GIPELREAFAKYYKKWGIDVEPDEILITNG---GSEAILFAMMAICDPGDEILVPEPFYANYNGFAT-----SAGVKIVP  138 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCcceEEEcCC---hHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHH-----HcCCEEEE
Confidence            4577888888876       2467899999   9999999999989999999999999998776654     25777777


Q ss_pred             eCCC--------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------c
Q 013079          173 VDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------P  235 (450)
Q Consensus       173 v~~~--------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~  235 (450)
                      ++.+        +++++++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.++      .
T Consensus       139 v~~~~~~g~~~~~~~~l~~~~-~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~  217 (397)
T PRK07568        139 VTTKIEEGFHLPSKEEIEKLI-TPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSA  217 (397)
T ss_pred             eecCcccCCCCCCHHHHHHhc-CccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccCh
Confidence            6642        468898888 788999999999999999975   789999999999999999999655422      1


Q ss_pred             cCC----CCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHH
Q 013079          236 ARL----GADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEH  309 (450)
Q Consensus       236 ~~~----g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~  309 (450)
                      ..+    +..+++.|+||.++++|+|+ ||++++ +++++.+......  ....+.+.+.++..++... .++.+..+.+
T Consensus       218 ~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~  294 (397)
T PRK07568        218 LSLEGLEDRVIIIDSVSKRYSACGARI-GCLISKNKELIAAAMKLCQA--RLSPPTLEQIGAAALLDTPESYFDEVREEY  294 (397)
T ss_pred             hhcCCCcCCEEEEecchhhccCCCcce-EEEecCCHHHHHHHHHHhhc--cCCCCcHHHHHHHHHhhCCHHHHHHHHHHH
Confidence            111    35689999999999999998 998874 6787776554331  1233445555555554432 3345555667


Q ss_pred             HHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013079          310 CHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL  372 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l  372 (450)
                      +++++.+.+.|++++. .+..|.                   .|.++|+.++.. ....|...+
T Consensus       295 ~~~~~~l~~~L~~~~~~~~~~p~-------------------g~~~~~~~l~~~-~~~~~~~~l  338 (397)
T PRK07568        295 KKRRDILYEELNKIPGVVCEKPK-------------------GAFYIIAKLPVD-DAEDFAKWL  338 (397)
T ss_pred             HHHHHHHHHHHhcCCCceecCCC-------------------cceEEEEecCCC-CHHHHHHHH
Confidence            8888999999987632 333332                   345688888742 244555554

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.95  E-value=1.9e-25  Score=229.04  Aligned_cols=287  Identities=17%  Similarity=0.158  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          101 VLNLSRQMAALEG----------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       101 ~~~l~~~iA~l~g----------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ...||+.||++++          ++++++|+|   +++++.+++.+++++||.|++++|.|+.+...+..    ..|.++
T Consensus        88 ~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~G---a~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~----~~g~~~  160 (468)
T PLN02450         88 LPAFKNALAEFMSEIRGNKVTFDPNKLVLTAG---ATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKW----RTGVEI  160 (468)
T ss_pred             hHHHHHHHHHHHHHhhCCCCCcChHHeEEccC---hHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhh----cCCcEE
Confidence            4567777777763          356899999   99999999999999999999999999998766531    157777


Q ss_pred             EEeCCC-------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079          171 TFVDIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       171 ~~v~~~-------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~  235 (450)
                      ..++.+       |++++++++.+     .++++|++++||||||.+.+   +++|+++|+++|+++|+||+|..+.++.
T Consensus       161 v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~  240 (468)
T PLN02450        161 VPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS  240 (468)
T ss_pred             EEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCC
Confidence            777642       66888887732     37899999999999999976   6688889999999999999996543211


Q ss_pred             ------c------------CCCCeEEEeCCCCccccCccceEEEEEcCHH-HHHHHHHHhhhhhhccCCCchHHHHHHHH
Q 013079          236 ------A------------RLGADVVVHSISKFISGGADIIAGAVCGPAN-LVNSMMDLHQGALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       236 ------~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~-~~~~l~~~~~~~~~~~g~~~~~~~a~~~~  296 (450)
                            .            ..+..+++.|+||.++.+|+|+ ||++++++ +.+.+..... .  ...+.+.+.++..++
T Consensus       241 ~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRi-G~li~~~~~l~~~~~~~~~-~--~~~s~~~Q~a~~~~L  316 (468)
T PLN02450        241 PGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRV-GAIYSNDEMVVSAATKMSS-F--GLVSSQTQYLLSALL  316 (468)
T ss_pred             CCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccE-EEEEECCHHHHHHHHHHhh-c--CCCCHHHHHHHHHHh
Confidence                  1            1245789999999999999999 99998754 4555544432 1  123445555555555


Q ss_pred             ccCC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HHHH
Q 013079          297 ERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKAN  366 (450)
Q Consensus       297 ~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~~~  366 (450)
                      ....    ++....+++.++++.+.+.|+++++.+..|                   ..|.++|+.++..      +...
T Consensus       317 ~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~-------------------~~g~flwi~l~~~~~~~~~~~~~  377 (468)
T PLN02450        317 SDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKS-------------------NAGLFCWVDMRHLLKSNTFEAEM  377 (468)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCC-------------------CceEEEEEEchHhcCcCCchHHH
Confidence            4432    345556678889999999999886544322                   2466899998621      1123


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC---HHHHHHHHHHHHHHh
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT---LDQRWSQFEKALSRM  442 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~---~~~~i~~l~~al~~~  442 (450)
                      ++...+..  ..| +.+..|+.+..                     ..++++||+++ ..+   .++.++.|.+++.+.
T Consensus       378 ~l~~~ll~--~~g-V~v~PG~~f~~---------------------~~~g~~Rl~f~-~~~~~~l~~~l~ri~~~l~~~  431 (468)
T PLN02450        378 ELWKKIVY--EVK-LNISPGSSCHC---------------------TEPGWFRVCFA-NMSEETLDLAMKRLKSFVESD  431 (468)
T ss_pred             HHHHHHHH--hCC-EEEeCccccCC---------------------CCCCEEEEEec-CCCHHHHHHHHHHHHHHHHhc
Confidence            34444422  123 45565543210                     12578999999 633   334455555555443

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.95  E-value=3.5e-25  Score=220.29  Aligned_cols=308  Identities=17%  Similarity=0.153  Sum_probs=211.4

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      +.+.+.++. ++...+.+.+.....+...++++.++++++.+..+++++   |++++..++.+++++||+|+++.+.|..
T Consensus        37 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~---G~~~~~~~l~~~~~~gd~v~~~~~~~~~  112 (360)
T TIGR00858        37 QAAQQGAEQ-YGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSS---GYLANVGVISALVGKGDLILSDALNHAS  112 (360)
T ss_pred             HHHHHHHHh-cCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECc---hHHHHHHHHHHhCCCCCEEEEEccccHH
Confidence            555555533 332222232222234678899999999999877777788   8888887888888999999999999999


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP  230 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~  230 (450)
                      +...+.     ..|.++..++..|++++++.+..   .++++|++++++|++|.+.|+++|.++|+++|+++|+|++|+.
T Consensus       113 ~~~~~~-----~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~  187 (360)
T TIGR00858       113 LIDGCR-----LSGARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGT  187 (360)
T ss_pred             HHHHHH-----hcCCceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccc
Confidence            887764     35778888877799999998832   2578999999999999999999999999999999999999843


Q ss_pred             C--CCCc---------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH-HHHHcc
Q 013079          231 L--VLSP---------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA-FELSER  298 (450)
Q Consensus       231 ~--~~~~---------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a-~~~~~~  298 (450)
                      .  ....         ...+.|+++.|+||.+++.|    ||+++++++++.+...........+.......+ ..++..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  263 (360)
T TIGR00858       188 GVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG----AYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALEL  263 (360)
T ss_pred             cCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC----cEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHH
Confidence            2  2110         01267899999999999754    899999888887754333111111222222222 223332


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079          299 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF  378 (450)
Q Consensus       299 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~  378 (450)
                      ........+++.++++++.+.|++++.++. +.                   .|+++++.++......+|.+.|...   
T Consensus       264 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~---  320 (360)
T TIGR00858       264 IQEEPWRREKLLALIARLRAGLEALGFTLM-PS-------------------CTPIVPVIIGDNASALALAEELQQQ---  320 (360)
T ss_pred             HhhCHHHHHHHHHHHHHHHHHHHHcCCccC-CC-------------------CCCEEEEEeCCHHHHHHHHHHHHHC---
Confidence            233344566788899999999988765432 21                   3568999987544466787777642   


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                      | +.+..+.....                    .-..+.||||++ ..++++.++.+.++|
T Consensus       321 g-I~v~~~~~~~~--------------------~~~~~~iRis~~-~~~~~~~i~~~l~~l  359 (360)
T TIGR00858       321 G-IFVGAIRPPTV--------------------PAGTSRLRLTLS-AAHTPGDIDRLAEAL  359 (360)
T ss_pred             C-eeEeeeCCCCC--------------------CCCCceEEEEEc-CCCCHHHHHHHHHhh
Confidence            3 44443211000                    001358999999 877777777777665

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=6.8e-26  Score=225.12  Aligned_cols=278  Identities=15%  Similarity=0.200  Sum_probs=196.0

Q ss_pred             cCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           94 SRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        94 ~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      .++..+...+|++.+|+++|.  +++++|+|   +++++.+++.+++++| |+|+++.|.|..+...++     ..|.++
T Consensus        55 ~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~G---s~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~-----~~g~~v  126 (354)
T PRK04635         55 NRYPECQPPELINAYSAYAGVAPEQILTSRG---ADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAE-----TFNVGV  126 (354)
T ss_pred             ccCCCCCHHHHHHHHHHHhCcCHHHEEEeCC---HHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHH-----HcCCEE
Confidence            344555578899999999986  46899999   9999999999999998 899999999998876654     367888


Q ss_pred             EEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc-CCEEEEeCCCCCCCCC--cc----CC
Q 013079          171 TFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLS--PA----RL  238 (450)
Q Consensus       171 ~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~~~--~~----~~  238 (450)
                      ..++.+     |++.++ .+  +++++|++++||||||.+.+.+++.++++.. ++++|+|++|..+...  ..    ..
T Consensus       127 ~~v~~~~~~~~~~~~l~-~~--~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~  203 (354)
T PRK04635        127 KALPLTADYQLPLDYIE-QL--DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASY  203 (354)
T ss_pred             EEEecCCCCCCCHHHHH-hc--cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhC
Confidence            887654     566665 33  5899999999999999999999999998763 7999999999554321  11    12


Q ss_pred             CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHHHHHHHHHHHHHHH
Q 013079          239 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       239 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l  316 (450)
                      ...+++.|+||++|++|+|+ ||+++++++++.+......   ...+.+.+.++..++..  .+.+.++.+++.++++.+
T Consensus       204 ~~~iv~~S~SK~~~l~GlRl-G~~i~~~~~~~~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l  279 (354)
T PRK04635        204 PNLVVLRTLSKAFALAGARC-GFTLANEELIEILMRVIAP---YPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARL  279 (354)
T ss_pred             CCEEEEechHHHhhhhHHHH-hhhhCCHHHHHHHHhhcCC---CCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999 9999999999888654431   11222333333333322  233445556678888999


Q ss_pred             HHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          317 ARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       317 ~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      .+.|++++ ..+. |.                   .|.++++.+++.   ..+.+.+..   .| +.+..++.      +
T Consensus       280 ~~~L~~~~~~~~~-~~-------------------~g~f~~~~~~~~---~~~~~~l~~---~g-v~v~~~~~------~  326 (354)
T PRK04635        280 QAALSMYGGAKVL-EG-------------------NGNYVLAKFDDV---DAVFKALWD---AG-IVARAYKD------P  326 (354)
T ss_pred             HHHHHhCCCceEC-CC-------------------CCcEEEEECCCH---HHHHHHHHH---CC-EEEEECCC------C
Confidence            99999876 3443 32                   245888888743   345555543   22 34332100      0


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                                       ..++.||||+| .   .+.++.|.++|+
T Consensus       327 -----------------~~~~~lRis~~-~---~e~~~~l~~al~  350 (354)
T PRK04635        327 -----------------RLANCIRFSFS-N---RAETDKLIGLIR  350 (354)
T ss_pred             -----------------CCCCeEEEEeC-C---HHHHHHHHHHHH
Confidence                             01468999999 3   344566666664

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=9.3e-26  Score=224.33  Aligned_cols=278  Identities=13%  Similarity=0.114  Sum_probs=190.6

Q ss_pred             hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      +....+|+.||++++.  +++++|+|   +++++.+++..+ .+|+ +++..|.|..+...++     ..|.++..++.+
T Consensus        55 ~~~~~lr~~ia~~~~~~~~~i~it~G---a~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~-----~~g~~~~~v~~~  124 (356)
T PRK08056         55 VEYRHLHQALARHHQVPASWILAGNG---ETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQ-----QVGCEIRRYSLR  124 (356)
T ss_pred             ccHHHHHHHHHHHhCcChhhEEECCC---HHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHH-----HcCCeEEEEecc
Confidence            3468999999999975  56899999   999999998876 6675 6778899998877664     367788777643


Q ss_pred             -----CH-HHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCC
Q 013079          177 -----DH-EMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGA  240 (450)
Q Consensus       177 -----d~-~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~  240 (450)
                           ++ +++.+.+ .+++++|++++||||||.+.+   +++|+++|+++++++|+|++|..+....       ...+.
T Consensus       125 ~~~~~~~~~~~~~~~-~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  203 (356)
T PRK08056        125 EADGWQLTDAILEAL-TPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPH  203 (356)
T ss_pred             cccCCCccHHHHHhc-cCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCC
Confidence                 22 3555667 688999999999999999988   7889999999999999999985553211       12357


Q ss_pred             eEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079          241 DVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR  319 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~  319 (450)
                      +++++|+||++|++|+|+ ||++. ++++++.+......   ...+.+.+.++..++....+..+..++++++++++.+.
T Consensus       204 ~i~~~S~SK~~~~~G~Ri-G~~v~~~~~~~~~l~~~~~~---~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~  279 (356)
T PRK08056        204 LWVLRSLTKFYAIPGLRL-GYLVNSDDAAVARMRRQQMP---WSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQA  279 (356)
T ss_pred             EEEEEechhhccCcchhh-eeeecCCHHHHHHHHHhCCC---CchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999 99987 46777777654321   11222333333333332233444456678888999999


Q ss_pred             HHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccc
Q 013079          320 MKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS  398 (450)
Q Consensus       320 L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~  398 (450)
                      |++++. .+ .|.                   .|+++++.++..  ...|.+.|...   | +.+..|+..         
T Consensus       280 L~~~~~~~~-~~~-------------------~~~~~~~~~~~~--~~~~~~~l~~~---g-I~v~~~~~f---------  324 (356)
T PRK08056        280 LCALPLLTV-WPG-------------------RANYLFLRCERP--DIDLQRALLTQ---R-ILIRSCANY---------  324 (356)
T ss_pred             HhcCCCcEE-cCC-------------------CCcEEEEEcCCC--hHHHHHHHHHC---C-eEEEECCCC---------
Confidence            987643 33 222                   356888888632  34566666542   3 455544321         


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       399 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                  .+...++||||++ .   .+..+.|.++|.++
T Consensus       325 ------------~~~~~~~iRis~~-~---~~~~~~l~~~l~~~  352 (356)
T PRK08056        325 ------------PGLDSRYYRVAIR-S---AAENERLLAALRNV  352 (356)
T ss_pred             ------------CCCCCCEEEEEEc-C---HHHHHHHHHHHHHH
Confidence                        0122478999999 4   23334555555544

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.95  E-value=3.8e-25  Score=219.26  Aligned_cols=310  Identities=18%  Similarity=0.189  Sum_probs=213.7

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      +++.+.++. ++++.+.|.+.....+..+++++.++++++.+..+++++   |++++.+++..++++||+|+++++.|++
T Consensus        22 ~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~s---g~~a~~~~~~~~~~~gd~Vl~~~~~~~~   97 (349)
T cd06454          22 EAAKEALDK-YGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSS---GYAANDGVLSTLAGKGDLIISDSLNHAS   97 (349)
T ss_pred             HHHHHHHHH-hCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEecc---HHHHHHHHHHHhcCCCCEEEEehhhhHH
Confidence            666666653 444333343333457889999999999999988888899   9999998888888999999999999998


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhc----CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS  229 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~----~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~  229 (450)
                      +...+.     ..|.++.+++..|++++++++..    +++++|++++++||||.+.|+++|+++|+++|+++|+|++|.
T Consensus        98 ~~~~~~-----~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~  172 (349)
T cd06454          98 IIDGIR-----LSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHS  172 (349)
T ss_pred             HHHHHH-----HcCCceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEcccc
Confidence            876664     25778887777788889888832    357899999999999999999999999999999999999983


Q ss_pred             -C-CCC--------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH---HHHHHH
Q 013079          230 -P-LVL--------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK---VAFELS  296 (450)
Q Consensus       230 -~-~~~--------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~---~a~~~~  296 (450)
                       + +..        .....++|+++.|+||.++++|    |+++.++++.+.+.......  ..+.+....   ++...+
T Consensus       173 ~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g----G~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l  246 (349)
T cd06454         173 VGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG----GYIAGSKELIDYLRSYARGF--IFSTSLPPAVAAAALAAL  246 (349)
T ss_pred             ccccCCCCCChhhhccccccCcEEEeechhhhcccC----CEEECCHHHHHHHHHhchhh--hccCCCCHHHHHHHHHHH
Confidence             2 211        1123478999999999999753    88888888887775543211  111122222   222222


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079          297 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA  376 (450)
Q Consensus       297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~  376 (450)
                      +.......+.+++.++++.+.+.|.+++..+..+.                   .+.++++.++......++.+.|... 
T Consensus       247 ~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~L~~~-  306 (349)
T cd06454         247 EVLQGGPERRERLQENVRYLRRGLKELGFPVGGSP-------------------SHIIPPLIGDDPAKAVAFSDALLER-  306 (349)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHhcCCcccCCC-------------------CCcEEEEeCCChHHHHHHHHHHHhC-
Confidence            22222345566778888999999988765432221                   1224555444333456777777642 


Q ss_pred             cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                        | +.++.++...                    .....+.|||+++ ...+++.++.+.++|+++
T Consensus       307 --g-I~~~~~~~~~--------------------~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         307 --G-IYVQAIRYPT--------------------VPRGTARLRISLS-AAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             --C-ceEEEecCCc--------------------cCCCCCeEEEEEe-CCCCHHHHHHHHHHHHHh
Confidence              3 4443321100                    0011478999999 877888888888887654

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=1.3e-25  Score=223.08  Aligned_cols=277  Identities=13%  Similarity=0.184  Sum_probs=193.4

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ..+...++|+++|++++.  +++++|+|   +++++..++.++ .+ +.|+++.|.|+.+...+.     ..|.++..++
T Consensus        52 ~~~~~~~lr~~ia~~~~~~~~~i~it~G---a~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~-----~~g~~~~~~~  121 (354)
T PRK06358         52 PDPDYLELRKRIASFEQLDLENVILGNG---ATELIFNIVKVT-KP-KKVLILAPTFAEYERALK-----AFDAEIEYAE  121 (354)
T ss_pred             CCccHHHHHHHHHHHhCCChhhEEECCC---HHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHH-----HcCCeeEEEe
Confidence            344567999999999875  56899999   999999999875 44 689999999999887774     2577777765


Q ss_pred             CC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c---
Q 013079          175 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A---  236 (450)
Q Consensus       175 ~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~---  236 (450)
                      .+       | +++.+.+ ..++++|++++||||||.+.+   +++|+++|+++++++|+|++|..+..+.     .   
T Consensus       122 ~~~~~~~~~d-~~~~~~~-~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~  199 (354)
T PRK06358        122 LTEETNFAAN-EIVLEEI-KEEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYL  199 (354)
T ss_pred             CccccCCCcc-HHHHHhh-ccCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhc
Confidence            42       4 4555556 567999999999999999986   7788889999999999999996654331     1   


Q ss_pred             -CCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013079          237 -RLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL  314 (450)
Q Consensus       237 -~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~  314 (450)
                       ..+..++++|+||.+|++|+|+ ||++.+ +.+++.+...+..   ...+.+.+.++..++...+++.+..+.+.++++
T Consensus       200 ~~~~~vi~~~S~SK~~gl~G~Ri-G~lv~~~~~~~~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~  275 (354)
T PRK06358        200 ENFKNLIIIRAFTKFFAIPGLRL-GYGLTSNKNLAEKLLQMREP---WSINTFADLAGQTLLDDKEYIKKTIQWIKEEKD  275 (354)
T ss_pred             cCCCCEEEEEechhhccCcchhh-eeeecCCHHHHHHHHHhCCC---CcchHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence             1246799999999999999999 999874 6777877765541   122333444444444332344556667788889


Q ss_pred             HHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccc
Q 013079          315 IFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS  393 (450)
Q Consensus       315 ~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~  393 (450)
                      .+.+.|++++. .+..|                    .|+++++.++..   ..|.+.|...   | +.+..|+..    
T Consensus       276 ~l~~~L~~~~~~~~~~~--------------------~g~f~~~~~~~~---~~~~~~l~~~---g-I~v~~~~~f----  324 (354)
T PRK06358        276 FLYNGLSEFKGIKVYKP--------------------SVNFIFFKLEKP---IDLRKELLKK---G-ILIRSCSNY----  324 (354)
T ss_pred             HHHHHHhcCCCcEEcCC--------------------cceEEEEEcCch---HHHHHHHHHC---C-eEEEECCCC----
Confidence            99999987633 33322                    245888988753   4566666542   3 455544321    


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013079          394 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK  437 (450)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~  437 (450)
                                       .+..+++||||+|..++.+.+++.|.+
T Consensus       325 -----------------~~~~~~~iRls~~~~~~~~~l~~~l~~  351 (354)
T PRK06358        325 -----------------RGLDENYYRVAVKSREDNKKLLKALEV  351 (354)
T ss_pred             -----------------CCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence                             011257899999922445555555443

>PRK08363 alanine aminotransferase; Validated

Probab=99.95  E-value=2.1e-25  Score=225.21  Aligned_cols=216  Identities=17%  Similarity=0.166  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           99 PTVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      +...+||+.||++++        .+++++|+|   +++|+.+++.+++++||+|+++.|+|..+...+.     ..|..+
T Consensus        70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G---~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~  141 (398)
T PRK08363         70 EGLPELREAIVKREKRKNGVDITPDDVRVTAA---VTEALQLIFGALLDPGDEILIPGPSYPPYTGLVK-----FYGGVP  141 (398)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCChhhEEEeCC---HHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCEE
Confidence            445678888888762        356899999   9999999999999999999999999999987764     245555


Q ss_pred             EEe-CC------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----
Q 013079          171 TFV-DI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----  235 (450)
Q Consensus       171 ~~v-~~------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----  235 (450)
                      ..+ +.      .|++++++++ ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.     
T Consensus       142 v~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~  220 (398)
T PRK08363        142 VEYRTIEEEGWQPDIDDIRKKI-TEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSP  220 (398)
T ss_pred             EEeccccccCCcCCHHHHHhhC-CcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCH
Confidence            554 22      2688899888 778999999999999999987   8899999999999999999986554321     


Q ss_pred             cCC---CCeEEEeCCCCccccCccceEEEEEc--CHHHHHHHHHHhhhh--hhccCCCchHHHHHHHHcc-CCcHHHHHH
Q 013079          236 ARL---GADVVVHSISKFISGGADIIAGAVCG--PANLVNSMMDLHQGA--LMLLGPTMNPKVAFELSER-IPHLGLRMK  307 (450)
Q Consensus       236 ~~~---g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~~~l~~~~~~~--~~~~g~~~~~~~a~~~~~~-~~~l~~~~~  307 (450)
                      ..+   ...+++.|+||.++.+|+|+ ||++.  ++++++.+.......  .....+.+.+.++..++.. .+++.+..+
T Consensus       221 ~~~~~~~~vi~~~SfSK~~~~~GlRi-G~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~  299 (398)
T PRK08363        221 GSLTKDVPVIVMNGLSKVYFATGWRL-GYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMK  299 (398)
T ss_pred             HHcCcCCcEEEEecchhccCCccceE-EEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHH
Confidence            111   35688999999999999999 99876  666766655433211  0123344455555444443 345556667


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 013079          308 EHCHRALIFARRMKKLG  324 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~  324 (450)
                      +++++++.+.+.|++++
T Consensus       300 ~~~~~~~~l~~~L~~~~  316 (398)
T PRK08363        300 KLKERRDYIYKRLNEIP  316 (398)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            78888899999998763

>PRK07550 hypothetical protein; Provisional

Probab=99.95  E-value=3.2e-25  Score=222.97  Aligned_cols=284  Identities=17%  Similarity=0.176  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..+||+.+|+.+    |    .+++++|+|   +++|+.+++.+++++||+|++++|.|..+...+.     ..|.++..
T Consensus        69 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~  140 (386)
T PRK07550         69 LPELREAYAAHYSRLYGAAISPEQVHITSG---CNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLD-----MLGIRPVY  140 (386)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcceEEEecC---cHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHH-----hcCCEEEE
Confidence            445555555554    3    367899999   9999999999999999999999999998877664     26888877


Q ss_pred             eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---c---c
Q 013079          173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---P---A  236 (450)
Q Consensus       173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---~---~  236 (450)
                      ++.+       |++++++++ ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+...   +   .
T Consensus       141 v~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~  219 (386)
T PRK07550        141 LPCDEGPGLLPDPAAAEALI-TPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLF  219 (386)
T ss_pred             EecCCCcCCCCCHHHHHHHh-cccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchh
Confidence            7753       688899988 778999999999999999976   789999999999999999998554321   1   1


Q ss_pred             C---C-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC-cHHHHHHHHHH
Q 013079          237 R---L-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCH  311 (450)
Q Consensus       237 ~---~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-~l~~~~~~~~~  311 (450)
                      .   . ...+++.|+||.+|.+|+|+ ||+++++++++.+....... ....+...+.++..++...+ ++.+..+.+.+
T Consensus       220 ~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~i~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~  297 (386)
T PRK07550        220 ADPDWDDTLVHLYSFSKSYALTGHRV-GAVVASPARIAEIEKFMDTV-AICAPRIGQIAVAWGLPNLADWRAGNRAEIAR  297 (386)
T ss_pred             hCCCccccEEEEecchhhccCcccce-EeeecCHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            1   1 24688999999999999998 99999998888887655411 12234444444444443322 23333455678


Q ss_pred             HHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccccc
Q 013079          312 RALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       312 ~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      +++.+.+.|++++ ..+ .|                   ..|.++|+.++. ..+..++...|..  +.| +.+..|+..
T Consensus       298 ~~~~l~~~L~~~~~~~~-~~-------------------~g~~~~~~~~~~~~~~~~~l~~~l~~--~~g-v~v~pg~~f  354 (386)
T PRK07550        298 RRDAFRAVFARLPGWEL-LA-------------------SGAYFAYVRHPFPDRPSREVARRLAK--EAG-ILCLPGTMF  354 (386)
T ss_pred             HHHHHHHHHHhCCCcee-CC-------------------CceEEEEecCCCCCCCHHHHHHHHHH--hcC-EEEeCchhh
Confidence            8888999998762 222 12                   135688888863 2235567666532  123 455444321


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      .                     ...+++||||++ ..+ ++.++...+.|.+
T Consensus       355 ~---------------------~~~~~~iRis~~-~~~-~~~~~~~~~~l~~  383 (386)
T PRK07550        355 G---------------------PGQEGYLRLAFA-NAD-VAGIGELVERLRA  383 (386)
T ss_pred             C---------------------CCCCCEEEEEee-cCC-HHHHHHHHHHHHh
Confidence            0                     011468999999 654 3344444444443

>PRK03321 putative aminotransferase; Provisional

Probab=99.95  E-value=5.1e-26  Score=225.93  Aligned_cols=276  Identities=16%  Similarity=0.178  Sum_probs=200.5

Q ss_pred             ChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           98 NPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      .+....+++.+|++++.+  ++++|+|   +++++..++..++++||+|+++.|.|..+...++     ..|.++..++.
T Consensus        56 ~~g~~~lr~~ia~~~~~~~~~I~~~~G---~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~-----~~g~~~~~v~~  127 (352)
T PRK03321         56 DMGAVELRAALAEHLGVPPEHVAVGCG---SVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQ-----VAGATPVQVPL  127 (352)
T ss_pred             CCcHHHHHHHHHHHhCcCHHHEEECCC---HHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHH-----HcCCEEEEccC
Confidence            346789999999999864  5899999   9999999998889999999999999988766554     25778777775


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc-----c----CCC
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A----RLG  239 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~-----~----~~g  239 (450)
                      +     |++++++++ ++++++|++++|+||||.+.|.++|.++|+.  +++++|+|++|..+.+..     .    ..+
T Consensus       128 ~~~~~~~~~~l~~~~-~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  206 (352)
T PRK03321        128 TPDHTHDLDAMAAAI-TDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHP  206 (352)
T ss_pred             CCCCCCCHHHHHHhh-ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCC
Confidence            4     789999988 7789999999999999999999999999987  599999999985543321     1    114


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR  319 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~  319 (450)
                      ..++++|+||.+|.+|.|+ ||+++++++++.+.....   ....+.+.+.++...+...+...++.++..++++.+.+.
T Consensus       207 ~vi~~~S~SK~~g~~GlRi-G~~v~~~~~~~~~~~~~~---~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~  282 (352)
T PRK03321        207 NVVVLRTFSKAYGLAGLRV-GYAVGHPEVIAALRKVAV---PFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAA  282 (352)
T ss_pred             CEEEEecchHHhhhHHHhh-hhhcCCHHHHHHHHHhcC---CCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999998 999999999988876532   122334444444444433344555566666667788888


Q ss_pred             HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccccccc
Q 013079          320 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST  399 (450)
Q Consensus       320 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~  399 (450)
                      |++.++.+ .|                   ..|.++++.++.  ....|.+.|..   .| +.+..           .  
T Consensus       283 L~~~~~~~-~~-------------------~~g~~i~i~l~~--~~~~~~~~l~~---~g-I~v~~-----------~--  323 (352)
T PRK03321        283 LRAAGWTV-PP-------------------SQANFVWLPLGE--RTADFAAAAAE---AG-VVVRP-----------F--  323 (352)
T ss_pred             HHHCCCcc-CC-------------------CCCCEEEEeCCC--CHHHHHHHHHH---CC-EEEEc-----------c--
Confidence            98765432 11                   136688888863  24567777754   23 33221           0  


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          400 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       400 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                                    ....|||+++..++.+.+++.|.+++
T Consensus       324 --------------~~~~iRi~~~~~~~~~~~~~al~~~~  349 (352)
T PRK03321        324 --------------AGEGVRVTIGAPEENDAFLRAARAWR  349 (352)
T ss_pred             --------------CCCcEEEeeCCHHHHHHHHHHHHHHh
Confidence                          12459999993355566666665554

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.95  E-value=4.1e-25  Score=222.62  Aligned_cols=242  Identities=15%  Similarity=0.177  Sum_probs=172.5

Q ss_pred             hhHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           99 PTVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      .....+|+.+|++++        .+++++|+|   ++++++.++.+++++||.|++++|.|..+...+.     ..|+++
T Consensus        73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~-----~~g~~v  144 (394)
T PRK06836         73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCG---AAGALNVALKAILNPGDEVIVFAPYFVEYRFYVD-----NHGGKL  144 (394)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCC---hHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEE
Confidence            445667788888763        456899999   9999999999999999999999999999877664     268888


Q ss_pred             EEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHh------cCCEEEEeCCCCCCCCCc
Q 013079          171 TFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       171 ~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~------~gi~livD~~~~~~~~~~  235 (450)
                      .+++.+      |++++++++ ++++++|++++|+||||.+.+   +++|+++|++      ||+++|+|++|..+.++.
T Consensus       145 ~~v~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~  223 (394)
T PRK06836        145 VVVPTDTDTFQPDLDALEAAI-TPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDG  223 (394)
T ss_pred             EEEecCCccCcCCHHHHHhhc-CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCC
Confidence            887653      689999999 789999999999999999987   6677888888      899999999996554321


Q ss_pred             ---c----CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHH--H----HHHhhhhhhccCCCchHHHHHHHHccCCcH
Q 013079          236 ---A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS--M----MDLHQGALMLLGPTMNPKVAFELSERIPHL  302 (450)
Q Consensus       236 ---~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~--l----~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l  302 (450)
                         .    ..+.++++.|+||.++.+|.|+ ||++.++.+.+.  +    ............+.+.+.++...+..    
T Consensus       224 ~~~~~~~~~~~~~i~~~S~SK~~~~pGlRi-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----  298 (394)
T PRK06836        224 AEVPYIFKYYDNSIVVYSFSKSLSLPGERI-GYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA----  298 (394)
T ss_pred             CCCCChHHccCcEEEEecchhhccCcceee-EEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC----
Confidence               1    1246899999999999999998 999988765332  1    11111000011122223333222222    


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ....+++.++++.+.+.|++++..+..|.                   .|.++|+.++.. ...++.+.+..
T Consensus       299 ~~~~~~~~~~r~~l~~~L~~~g~~~~~~~-------------------gg~~~~~~~~~~-~~~~~~~~l~~  350 (394)
T PRK06836        299 TVDVSIYKRNRDLLYDGLTELGFECVKPQ-------------------GAFYLFPKSPEE-DDVAFCEKAKK  350 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCEeecCC-------------------ceEEEEEeCCCC-CHHHHHHHHHh
Confidence            12345567788889999988776544332                   466888888642 24556666654

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.95  E-value=2.5e-25  Score=218.95  Aligned_cols=277  Identities=18%  Similarity=0.158  Sum_probs=199.9

Q ss_pred             ccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           93 YSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      +.++.++...++|+.+|+++|.  +.+++|+|   +++++.++... +.+| .|++++|+|..+...+.     ..|+++
T Consensus        41 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G---~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~-----~~g~~~  110 (330)
T TIGR01140        41 WARYPDPEYDELRAAAAAYYGLPAASVLPVNG---AQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWR-----AAGHEV  110 (330)
T ss_pred             HhhCCCccHHHHHHHHHHHhCCChhhEEECCC---HHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHH-----HcCCEE
Confidence            4455555569999999999985  56899999   99999987655 5677 69999999999887764     368888


Q ss_pred             EEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--cc----CCCCe
Q 013079          171 TFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--PA----RLGAD  241 (450)
Q Consensus       171 ~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~--~~----~~g~d  241 (450)
                      ..++  |++++++.+ + ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+...  ..    ..+.+
T Consensus       111 ~~~~--d~~~l~~~~-~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  186 (330)
T TIGR01140       111 VELP--DLDRLPAAL-E-ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGL  186 (330)
T ss_pred             EEeC--CHHHHHhhc-c-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCE
Confidence            8877  899999888 4 5789999999999999998   667788889999999999998544322  11    12578


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~  321 (450)
                      +++.|+||.+|++|.|+ ||++.++++++.+......   ...+.+++.++...+....+.....++++++++.+.+.|+
T Consensus       187 i~~~S~SK~~g~~G~R~-G~i~~~~~~~~~l~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~  262 (330)
T TIGR01140       187 VVLRSLTKFFGLAGLRL-GFVVAHPALLARLREALGP---WTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLA  262 (330)
T ss_pred             EEEEecchhhcCchhhh-hheeCCHHHHHHHHhcCCC---CCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998 9999999988888766541   2223334444434443333344555667889999999999


Q ss_pred             hCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccC
Q 013079          322 KLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS  400 (450)
Q Consensus       322 ~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~  400 (450)
                      +++. ++ .|                   +.|.++|+.+++.   ..|.+.|...   | +.+..|...           
T Consensus       263 ~~~~~~~-~~-------------------~~~~f~~~~~~~~---~~l~~~l~~~---g-i~v~pg~~f-----------  304 (330)
T TIGR01140       263 RLGGLEV-VG-------------------GTALFLLVRTPDA---AALHEALARR---G-ILIRDFDNF-----------  304 (330)
T ss_pred             hCCCceE-CC-------------------CCCeEEEEEcCCH---HHHHHHHHHC---C-EEEEECCCC-----------
Confidence            8864 32 22                   2456888888753   4566666542   3 454544321           


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       401 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                                .+...++|||+++ ..+  +. +.|.++|
T Consensus       305 ----------~~~~~~~iRi~~~-~~~--~~-~~~~~~l  329 (330)
T TIGR01140       305 ----------PGLDPRYLRFALP-TDE--EN-DRLEEAL  329 (330)
T ss_pred             ----------CCCCCCEEEEEec-CHH--HH-HHHHHhh
Confidence                      0122478999999 532  33 6666554

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.95  E-value=4.7e-25  Score=224.43  Aligned_cols=287  Identities=15%  Similarity=0.181  Sum_probs=195.1

Q ss_pred             hHHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079          100 TVLNLSRQMAALEG----------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus       100 ~~~~l~~~iA~l~g----------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ....||+.+|++++          ++++++|+|   +++|+.+++.+++.+||.|+++.|.|+++...+..   + .|++
T Consensus        96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G---~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~---~-~g~~  168 (447)
T PLN02607         96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAG---ATAANELLTFILADPGDALLVPTPYYPGFDRDLRW---R-TGVK  168 (447)
T ss_pred             chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHh---c-CCcE
Confidence            34567777777653          245899999   99999999999999999999999999998765531   1 4677


Q ss_pred             EEEeCCC-------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          170 TTFVDIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       170 v~~v~~~-------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                      +..++.+       |++++++++..     .++++|++++||||||.+.+   +++|.++|+++|+++|+||+|....++
T Consensus       169 vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~  248 (447)
T PLN02607        169 IVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFS  248 (447)
T ss_pred             EEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccC
Confidence            7766542       67888888732     37899999999999999986   778999999999999999999543221


Q ss_pred             ------cc---------C-CCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc
Q 013079          235 ------PA---------R-LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSE  297 (450)
Q Consensus       235 ------~~---------~-~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~  297 (450)
                            ..         . ....+++.|+||.+|.+|.|+ ||++. ++.+...+..... .  ...+.+.+..+..++.
T Consensus       249 ~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRv-G~ivs~n~~l~~~~~~~~~-~--~~~s~~~q~~~~~~L~  324 (447)
T PLN02607        249 ASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRV-GTIYSYNDKVVTTARRMSS-F--TLVSSQTQHLLASMLS  324 (447)
T ss_pred             CCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceE-EEEEEcCHHHHHHHHHHhh-c--CCCCHHHHHHHHHHhC
Confidence                  11         1 134688999999999999999 99987 6667666654432 0  1223344444444444


Q ss_pred             cCCc----HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HHHHH
Q 013079          298 RIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EKANR  367 (450)
Q Consensus       298 ~~~~----l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~~~~  367 (450)
                      ..+.    +....+++.++++.+.+.|+++++.+..|                   ..|.++|++++..      +...+
T Consensus       325 d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~-------------------~ag~fvw~~L~~~~~~~~~~~e~~  385 (447)
T PLN02607        325 DEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKG-------------------NAGLFCWMNLSPLLETPTREGELA  385 (447)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-------------------CeeEEEEEEchHhhcCCCchhHHH
Confidence            4332    33444557788888999999876543322                   3577999998621      22234


Q ss_pred             HHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC---HHHHHHHHHHHHHH
Q 013079          368 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT---LDQRWSQFEKALSR  441 (450)
Q Consensus       368 ~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~---~~~~i~~l~~al~~  441 (450)
                      +.+.+..  ..| +.++.|+.+.                     ...++++||+|+ ..+   .++.+++|.+++.+
T Consensus       386 l~~~ll~--~~g-V~v~pG~~f~---------------------~~~~g~fRi~fa-~~~~~~l~~gl~Ri~~~l~~  437 (447)
T PLN02607        386 LWDSILR--EVK-LNISPGSSCH---------------------CSEPGWFRVCFA-NMSEDTLEVALKRIHRFMDR  437 (447)
T ss_pred             HHHHHHH--hCC-EEEcCccccC---------------------CCCCCEEEEEec-cCCHHHHHHHHHHHHHHHHH
Confidence            5544432  123 4556564321                     012589999999 633   44445555555543

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.95  E-value=4.1e-25  Score=227.38  Aligned_cols=285  Identities=17%  Similarity=0.189  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          101 VLNLSRQMAALEG----------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       101 ~~~l~~~iA~l~g----------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ..++|+.||++++          ++++++|+|   +++|+.+++.+++++||.|+++.|.|+++...+..   + .|+++
T Consensus        96 ~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~G---a~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~---~-~G~~v  168 (496)
T PLN02376         96 LKKFRQAIAHFMGKARGGKVTFDPERVVMSGG---ATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRW---R-TGVEI  168 (496)
T ss_pred             cHHHHHHHHHHHHHHhCCCCcCChhhEEEccc---hHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHh---h-CCCEE
Confidence            3456677776653          356899999   99999999999999999999999999999875531   1 57788


Q ss_pred             EEeCCC-------CHHHHHHhhh-----cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079          171 TFVDIS-------DHEMVNSAIV-----QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       171 ~~v~~~-------d~~~l~~ai~-----~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~  235 (450)
                      ..++.+       |++++++++.     ..++++|++++||||||.+.+   +++|+++|+++++++|+||+|..+.++.
T Consensus       169 v~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~  248 (496)
T PLN02376        169 IPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG  248 (496)
T ss_pred             EEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCC
Confidence            777652       6777765531     247899999999999999987   6678889999999999999996543321


Q ss_pred             ---c---CC-----------CCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHc
Q 013079          236 ---A---RL-----------GADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSE  297 (450)
Q Consensus       236 ---~---~~-----------g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~  297 (450)
                         .   .+           ...+++.|+||.+|.+|+|+ ||++.+ +.+.+.+..... .  ...+.+.+.++..++.
T Consensus       249 ~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRv-G~li~~~~~l~~~~~~~~~-~--~~vs~~~Q~a~~~~L~  324 (496)
T PLN02376        249 GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRV-GIVYSFNDSVVSCARKMSS-F--GLVSSQTQLMLASMLS  324 (496)
T ss_pred             CCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceE-EEEEECCHHHHHHHHHHhh-c--CCCCHHHHHHHHHHhC
Confidence               0   01           12356899999999999999 999885 555554443332 1  1223344444444444


Q ss_pred             cCCcHH----HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-------HHHH
Q 013079          298 RIPHLG----LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKAN  366 (450)
Q Consensus       298 ~~~~l~----~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-------~~~~  366 (450)
                      ..+.+.    ...+++.++++.+.+.|++.++.+..|                   ..|.++|++++..       +...
T Consensus       325 d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~-------------------~aG~flwi~l~~~~~~~~~~~~e~  385 (496)
T PLN02376        325 DDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTS-------------------NAGLFAWMDLRHLLRDRNSFESEI  385 (496)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC-------------------CceEEEEEEchhhhccCCchhHHH
Confidence            333222    234556788888999998876554322                   2577999998631       1123


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC---HHHHHHHHHHHHH
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT---LDQRWSQFEKALS  440 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~---~~~~i~~l~~al~  440 (450)
                      .|.+.+..  ..| +.++.|+.+..                     -.++++||+++ ..+   .++.+++|.+++.
T Consensus       386 ~l~~~ll~--~~g-V~v~pGs~F~~---------------------~~~g~~Ri~fa-~~~~~~l~~al~rl~~~l~  437 (496)
T PLN02376        386 ELWHIIID--KVK-LNVSPGSSFRC---------------------TEPGWFRICFA-NMDDDTLHVALGRIQDFVS  437 (496)
T ss_pred             HHHHHHHH--cCC-EEEeCccccCC---------------------CCCCEEEEEee-CCCHHHHHHHHHHHHHHHH
Confidence            45554432  123 56666643210                     01579999999 633   3334455555554

>PRK08175 aminotransferase; Validated

Probab=99.95  E-value=4e-25  Score=222.88  Aligned_cols=243  Identities=16%  Similarity=0.127  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++|+.+|+++    |    .+ ++++|+|   +++++++++..++++||+|++++|+|+.+...+.     ..|.++.
T Consensus        69 ~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G---~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~  140 (395)
T PRK08175         69 IPRLRRAISRWYQDRYDVDIDPESEAIVTIG---SKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAV-----IAGAQVR  140 (395)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCcEEEccC---cHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHH-----HcCCeEE
Confidence            456677777654    3    24 5899999   9999999999999999999999999998876664     2577877


Q ss_pred             EeCCC----CHHHHHHhhhc--CCceEEEEecCCCCcccccCH---HHHHHHHHhcCCEEEEeCCCCCCCCCc------c
Q 013079          172 FVDIS----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANI---PELSRLAHDKGVTVVVDNTFSPLVLSP------A  236 (450)
Q Consensus       172 ~v~~~----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l---~~I~~la~~~gi~livD~~~~~~~~~~------~  236 (450)
                      .++.+    +.+++++++..  +++++|++++|+||||.+.+.   ++|+++|+++|+++|+|++|..+.++.      .
T Consensus       141 ~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~  220 (395)
T PRK08175        141 SVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIM  220 (395)
T ss_pred             EEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchh
Confidence            77654    47788887732  478999999999999999876   799999999999999999985443221      1


Q ss_pred             C----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHHHH
Q 013079          237 R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCH  311 (450)
Q Consensus       237 ~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~  311 (450)
                      .    .+..+++.|+||.+|.+|+|+ ||++.++++++.+....... ....+.+.+.++..++... .++....+.+++
T Consensus       221 ~~~~~~~~~i~~~S~SK~~g~pGlRi-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~  298 (395)
T PRK08175        221 QVPGAKDVAVEFFTLSKSYNMAGWRI-GFMVGNPELVSALARIKSYH-DYGTFTPLQVAAIAALEGDQQCVRDIAEQYKR  298 (395)
T ss_pred             cCCCcccCEEEEeeccccccCcchhh-eeeeCCHHHHHHHHHHHhhc-ccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            1    134578899999999999999 99999999999887665411 1223344444444444332 234445566788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHh
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYL  372 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~~~~~l  372 (450)
                      +++.+.+.|++++..+..|.                   .|.++|++++...   ....|...+
T Consensus       299 ~~~~~~~~L~~~~~~~~~p~-------------------~g~~i~i~l~~~~~~~~~~~~~~~l  343 (395)
T PRK08175        299 RRDVLVKGLHEAGWMVEMPK-------------------ASMYVWAKIPEPYAAMGSLEFAKKL  343 (395)
T ss_pred             HHHHHHHHHHHcCCcccCCC-------------------EEEEEEEECCcccCCCCHHHHHHHH
Confidence            88999999988765443332                   5779999998431   245566554

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.7e-25  Score=222.62  Aligned_cols=244  Identities=14%  Similarity=0.157  Sum_probs=171.7

Q ss_pred             hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      +....|++.||+.++.  +++++|+|   +++++++++++++++||.|++++|+|..+.....     ..|..+..++.+
T Consensus        65 ~~~~~lr~~ia~~~~~~~~~I~it~G---~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~-----~~g~~~~~~~l~  136 (357)
T PRK14809         65 ASHADLTAALADRWDVSPEQVWLANG---GDGALDYLARAMLDPGDTVLVPDPGFAYYGMSAR-----YHHGEVREYPVS  136 (357)
T ss_pred             CCHHHHHHHHHHHhCCCcceEEECCC---HHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCeEEEEecc
Confidence            3467899999999874  56899999   9999999999999999999999999987765543     245555555432


Q ss_pred             -------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCCCCCCCcc------CCCCe
Q 013079          177 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVLSPA------RLGAD  241 (450)
Q Consensus       177 -------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~~~~------~~g~d  241 (450)
                             |++++.+..  +++++|++++||||||.+.+.+++.++++..  ++++|+||+|..+...+.      ..+..
T Consensus       137 ~~~~~~~~~~~~~~~~--~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~v  214 (357)
T PRK14809        137 KADDFEQTADTVLDAY--DGERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDV  214 (357)
T ss_pred             cCcCCCcCHHHHHHhh--cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCE
Confidence                   455665544  3689999999999999999987777776643  789999999966543221      12467


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~  321 (450)
                      +++.|+||.+|++|+|+ ||+++++++++.+.....   ....+.+.+.++..++...+++....+.++++++.+.+.|.
T Consensus       215 i~~~SfSK~~~~~GlRi-G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~  290 (357)
T PRK14809        215 AVLRTFSKAYGLAGLRL-GYAVVPEEWADAYARVNT---PFAASELACRAGLAALDDDEHVERTVETARWAREYIREELD  290 (357)
T ss_pred             EEEecchhHhcCcchhh-eeeecCHHHHHHHHHhCC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999 999999999888876543   12223333444444443333344445556777777777775


Q ss_pred             hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079          322 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       322 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      ..    ..|                   ..|.++++.+++   ...|.+.+...   | +.+..|
T Consensus       291 ~~----~~~-------------------~~g~f~~~~~~~---~~~~~~~l~~~---g-v~v~~g  325 (357)
T PRK14809        291 AP----TWE-------------------SAGNFVLAEVGD---ASAVAEAAQER---G-VIVRDC  325 (357)
T ss_pred             Cc----cCC-------------------CCCCEEEEECCC---HHHHHHHHHHC---C-EEEEEC
Confidence            42    112                   146688988863   34566666542   3 455555

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=3e-25  Score=218.87  Aligned_cols=274  Identities=16%  Similarity=0.104  Sum_probs=191.8

Q ss_pred             CCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079           95 RHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      +|..+. .+|++.||+++|.   +++++|+|   +++++.++.. ++++|+ |++..|+|+.+...++     ..|.++.
T Consensus        50 ~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~G---s~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~-----~~g~~~~  118 (339)
T PRK06959         50 RLPEDD-DGLAACAARYYGAPDAAHVLPVAG---SQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFA-----RHGHRVV  118 (339)
T ss_pred             hCCCch-HHHHHHHHHHhCCCCcccEEECcC---HHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHH-----HCCCEEE
Confidence            455666 8999999999986   46899999   9999986654 567776 8889999999988875     3688888


Q ss_pred             EeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHH---HHhcCCEEEEeCCCCCCCCCc--c---CCCCeEE
Q 013079          172 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPLVLSP--A---RLGADVV  243 (450)
Q Consensus       172 ~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~l---a~~~gi~livD~~~~~~~~~~--~---~~g~di~  243 (450)
                      .++.++ +    .+ .+.++++++++||||||.+.+.+++.++   |+++++++|+||+|..+...+  .   .....++
T Consensus       119 ~v~~~~-~----~~-~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~  192 (339)
T PRK06959        119 PLDEAA-D----TL-PAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVV  192 (339)
T ss_pred             eecccc-h----hc-cccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEE
Confidence            877644 2    23 3456799999999999999886666555   567899999999996654211  1   1234689


Q ss_pred             EeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          244 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       244 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      +.|+||.+|.+|+|+ ||+++++++++.+...+..   ...+.+.+.++..++....+.....+++.++++++.+.|+++
T Consensus       193 l~SfSK~~gl~GlRi-Gy~v~~~~li~~l~~~~~~---~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  268 (339)
T PRK06959        193 LRSVGKFFGLAGVRA-GFVLAAPALLAALRDALGA---WTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH  268 (339)
T ss_pred             EecChhhcCCcchhe-EEEecCHHHHHHHHHhcCC---CCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999 9999999999999876552   223344455555555443445555566788899999999987


Q ss_pred             CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCC
Q 013079          324 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL  403 (450)
Q Consensus       324 ~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~  403 (450)
                      ++.+. +                    .+.++++.+++   ...+.+.|...   | +.+..   +              
T Consensus       269 g~~~~-~--------------------~~~f~~~~~~~---~~~l~~~l~~~---G-I~vr~---~--------------  303 (339)
T PRK06959        269 GFAVH-A--------------------TPLFSWTDDPR---AAALHAALARR---G-IWTRY---F--------------  303 (339)
T ss_pred             CCCcc-C--------------------cceEEEEeCCC---HHHHHHHHHhC---C-eEEEE---C--------------
Confidence            65432 1                    13477887763   34566666642   3 33320   0              


Q ss_pred             CHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHhh
Q 013079          404 NAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       404 ~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~~  443 (450)
                              + ..++||||+ |..++.+.+++.|.+.++.+.
T Consensus       304 --------~-~~~~lRisi~~~~~e~~~l~~al~~~~~~~~  335 (339)
T PRK06959        304 --------A-PPPSVRFGLPADEAEWQRLEDALAECVPTLA  335 (339)
T ss_pred             --------C-CCCeEEEECCCCHHHHHHHHHHHHHHHHHHh
Confidence                    0 135899999 522444556666665555443

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.95  E-value=2.6e-24  Score=216.17  Aligned_cols=311  Identities=16%  Similarity=0.134  Sum_probs=214.3

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      +++.+.+.. ++.+...+.+.+...+..+++++.++++++.+..+++++   |++++..++..++++||+|+++.+.|+.
T Consensus        60 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~---g~~~~~~~l~~~~~~gd~V~~~~~~~~~  135 (385)
T PRK05958         60 AAAQQAARR-YGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSS---GYAANLAVLTALAGKGDLIVSDKLNHAS  135 (385)
T ss_pred             HHHHHHHHh-cCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECc---HHHHHHHHHHHhCCCCCEEEEeCccCHH
Confidence            556655543 332222333334456788999999999999888888888   9999888888889999999999999999


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC--CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-  230 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-  230 (450)
                      +...+.     ..|.++..++..|++++++.+...  +++++++++++|++|.+.++++|+++|+++|+++|+|++|+. 
T Consensus       136 ~~~~~~-----~~g~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g  210 (385)
T PRK05958        136 LIDGAR-----LSRARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTG  210 (385)
T ss_pred             HHHHHH-----hcCCceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECccccc
Confidence            887764     357788888878999999988322  467888889999999999999999999999999999999932 


Q ss_pred             -CCCC---------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH-HHHccC
Q 013079          231 -LVLS---------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSERI  299 (450)
Q Consensus       231 -~~~~---------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~~  299 (450)
                       +...         ......++++.|+||+++++|    |+++.++++.+.+...........+..+.+.++. .++...
T Consensus       211 ~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~  286 (385)
T PRK05958        211 VLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG----AAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRIL  286 (385)
T ss_pred             ccCCCCCchHHhhCCCCCCceEEEEechhhcccCC----cEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH
Confidence             2211         111235688999999998754    8888888888776543321111122222232222 222222


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079          300 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG  379 (450)
Q Consensus       300 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g  379 (450)
                      +......+++.++++++.+.|++.+.++..                    +.|++++|.+++.....+|.+.|...   |
T Consensus       287 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g  343 (385)
T PRK05958        287 RREPERRERLAALIARLRAGLRALGFQLMD--------------------SQSAIQPLIVGDNERALALAAALQEQ---G  343 (385)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHcCCCcCC--------------------CCCCEEEEEeCCHHHHHHHHHHHHHC---C
Confidence            222445567788889999999887654321                    13568899988654566788887642   3


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                       +.++.+..      + .             ....++.||||++ ...+++.++.+.++|.++
T Consensus       344 -I~v~~~~~------~-~-------------~~~~~~~lRis~~-~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        344 -FWVGAIRP------P-T-------------VPAGTSRLRITLT-AAHTEADIDRLLEALAEA  384 (385)
T ss_pred             -ceEecccC------C-C-------------CCCCCceEEEEec-CCCCHHHHHHHHHHHHhc
Confidence             44443211      0 0             0011368999999 777788888887777653

>PRK07908 hypothetical protein; Provisional

Probab=99.94  E-value=2.5e-24  Score=213.50  Aligned_cols=272  Identities=16%  Similarity=0.178  Sum_probs=188.6

Q ss_pred             hHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-
Q 013079          100 TVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-  176 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-  176 (450)
                      ....+|+.||++++.  +++++|+|   +++++.+++.  +.+| .+++..|+|..+...++     ..|.++..++.+ 
T Consensus        59 g~~~lr~aia~~~~~~~~~I~it~G---a~~al~~~~~--l~~~-~viv~~P~y~~~~~~~~-----~~G~~i~~v~~~~  127 (349)
T PRK07908         59 DERRARAAVAARHGRTPDEVLLLAG---AAEGFALLAR--LRPR-RAAVVHPSFTEPEAALR-----AAGIPVHRVVLDP  127 (349)
T ss_pred             chHHHHHHHHHHhCcChhhEEECCC---HHHHHHHHHh--cCCC-eEEEeCCCChHHHHHHH-----HcCCEEEeeccCc
Confidence            467899999999875  56899999   9999998887  4664 56778999998877664     368888877654 


Q ss_pred             ----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC----Cc--cCCCCeEEEeC
Q 013079          177 ----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL----SP--ARLGADVVVHS  246 (450)
Q Consensus       177 ----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~----~~--~~~g~di~~~S  246 (450)
                          |++    .+ +++++++++++||||||.+.+.++|.++|++ +.++|+|++|..+..    +.  ...+..+++.|
T Consensus       128 ~~~~d~~----~l-~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S  201 (349)
T PRK07908        128 PFRLDPA----AV-PDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRS  201 (349)
T ss_pred             ccCcChh----Hh-ccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEee
Confidence                333    35 5678999999999999999999999999974 788999999854421    11  12245688899


Q ss_pred             CCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          247 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       247 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      +||.++++|+|+ ||++.++++++.+......   ...+.+.+.++.....  ..+++....+++.++++.+.+.|++++
T Consensus       202 ~SK~~~l~GlRi-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  277 (349)
T PRK07908        202 LTKTWSLAGLRV-GYALGAPDVLARLTRGRAH---WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAVG  277 (349)
T ss_pred             cccccCCcccee-eeeecCHHHHHHHHhcCCC---CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999998 9999999999888765441   1112222222222222  123455556667888899999998875


Q ss_pred             CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079          325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN  404 (450)
Q Consensus       325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~  404 (450)
                      ..+..|.                   .|.++|+.+++.   ..+...+...   | +.+..|....              
T Consensus       278 ~~~~~p~-------------------~g~~~~~~~~~~---~~~~~~l~~~---g-I~v~~g~~f~--------------  317 (349)
T PRK07908        278 ARVVDPA-------------------AAPFVLVRVPDA---ELLRKRLRER---G-IAVRRGDTFP--------------  317 (349)
T ss_pred             cEeccCC-------------------CceEEEEECCcH---HHHHHHHHhC---C-EEEEECCCCC--------------
Confidence            5544332                   477999999852   3455555432   2 5555553210              


Q ss_pred             HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                             +..+++||||++..++.+.+++.|.+.+
T Consensus       318 -------~~~~~~vRis~~~~~~~~~l~~al~~~~  345 (349)
T PRK07908        318 -------GLDPDYLRLAVRPRAEVPVLVQALAEIL  345 (349)
T ss_pred             -------CCCCCeEEEEeCCCccHHHHHHHHHHHH
Confidence                   1125789999993345555555555443

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.94  E-value=2.2e-25  Score=225.76  Aligned_cols=251  Identities=11%  Similarity=0.116  Sum_probs=168.3

Q ss_pred             ccccCCCChhHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhC
Q 013079           91 FIYSRHFNPTVLNLSRQMAALE--------GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF  162 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~--------g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~  162 (450)
                      +.|+  ..+....||+.||+++        ..+++++|+|   +++++.+++ .++.+||+|++++|+|+.+...+..  
T Consensus        70 ~~Y~--~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G---a~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~--  141 (409)
T PRK07590         70 RGYG--PEQGYDFLREKIAENDYQARGCDISADEIFISDG---AKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVM--  141 (409)
T ss_pred             cCCC--CCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCC---HHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHH--
Confidence            4454  3344567888888764        2467899999   999999854 5678999999999999999887752  


Q ss_pred             CCccCee-----------EEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013079          163 PRACNIT-----------TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF  228 (450)
Q Consensus       163 ~~~~g~~-----------v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~  228 (450)
                         .|.+           +..++.+.-+.+...+..+++++|++++||||||.+.+   +++|+++|+++|+++|+||+|
T Consensus       142 ---~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y  218 (409)
T PRK07590        142 ---AGRTGEANEDGRYSGIVYLPCTAENNFVPELPEEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAY  218 (409)
T ss_pred             ---cCCcccccccccccceeEeecccccCCcccCcccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccc
Confidence               4543           66666531112222232367999999999999999976   667888899999999999999


Q ss_pred             CCCCCCc------cCC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHH-----------HHHhhhhhhccCCCc
Q 013079          229 SPLVLSP------ARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSM-----------MDLHQGALMLLGPTM  287 (450)
Q Consensus       229 ~~~~~~~------~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l-----------~~~~~~~~~~~g~~~  287 (450)
                      ..+.++.      ..+    +..++++|+||.+|.+|+|+ ||+++++++++.+           ............+.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRi-G~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  297 (409)
T PRK07590        219 EAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRC-AYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYI  297 (409)
T ss_pred             hhhccCCCCCcchhhCCCcccceEEEecCccccCCcCcee-EEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHH
Confidence            6554321      111    24688999999999999999 9999999888632           111110000112334


Q ss_pred             hHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013079          288 NPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA  365 (450)
Q Consensus       288 ~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~  365 (450)
                      .+.++..++..  ..++....+.+.++++.+.+.|++++..+..|.                   .|.++|+.++.....
T Consensus       298 ~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-------------------g~~f~wi~~~~~~~~  358 (409)
T PRK07590        298 VQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVYGGV-------------------NAPYIWVKTPDGMSS  358 (409)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceecCC-------------------cceEEEEECCCCCCH
Confidence            44444343432  234455556678889999999998765443221                   466899999843223


Q ss_pred             HHHHHHh
Q 013079          366 NRLMNYL  372 (450)
Q Consensus       366 ~~~~~~l  372 (450)
                      ..|...+
T Consensus       359 ~~~~~~l  365 (409)
T PRK07590        359 WDFFDKL  365 (409)
T ss_pred             HHHHHHH
Confidence            4555544

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=7.1e-25  Score=215.94  Aligned_cols=239  Identities=16%  Similarity=0.183  Sum_probs=176.0

Q ss_pred             CCChhHHHHHHHHHHHhC-----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           96 HFNPTVLNLSRQMAALEG-----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g-----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      +..+...+|++.||++++     .+++++|+|   +++++.+++.++    |.|++.+|+|+.+...+.     ..|.++
T Consensus        53 Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~G---a~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~-----~~g~~~  120 (335)
T PRK14808         53 YYDSPDEELIEKILSYLDTDFLSKNNVSVGNG---ADEIIYVMMLMF----DRSVFFPPTYSCYRIFAK-----AVGAKF  120 (335)
T ss_pred             CCCCChHHHHHHHHHHhCCCCCCcceEEEcCC---HHHHHHHHHHHh----CcEEECCCCHHHHHHHHH-----HcCCeE
Confidence            334457789999999987     467899999   999999999876    679999999999998885     368888


Q ss_pred             EEeCCCCHHHH-HHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-Cc---c-CCCCeEEE
Q 013079          171 TFVDISDHEMV-NSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-SP---A-RLGADVVV  244 (450)
Q Consensus       171 ~~v~~~d~~~l-~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-~~---~-~~g~di~~  244 (450)
                      ..++.++--.+ ...+  .++++|++++||||||.+.+.+++.+++ ++++++|+||+|..+.. ..   . .....+++
T Consensus       121 ~~v~~~~~~~~~~~~~--~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~  197 (335)
T PRK14808        121 LEVPLTKDLRIPEVNV--GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVI  197 (335)
T ss_pred             EEecCCCcCCCChhHc--cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEE
Confidence            88876421001 1113  3578999999999999999999999998 57999999999965531 11   1 12467999


Q ss_pred             eCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          245 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      .|+||.++.+|+|+ ||+++++++++.+...+..   ...+.+.+.++..++...++..+..+.+.++++.+.+.|++++
T Consensus       198 ~S~SK~~~l~GlRv-G~~v~~~~~~~~l~~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  273 (335)
T PRK14808        198 RTFSKAFSLAAQRI-GYVVSSEKFIDAYNRVRLP---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG  273 (335)
T ss_pred             EechhhccCcccce-EEEEeCHHHHHHHHHhcCC---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999 9999999999988765531   2233444555544444334455556666777888999998877


Q ss_pred             CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ..+..|                    .|+++++.++..+ ...+.+.+..
T Consensus       274 ~~~~~~--------------------~g~f~~~~l~~~~-~~~~~~~l~~  302 (335)
T PRK14808        274 YRITDS--------------------RGNFVFIFMEKEE-KERLLEHLRA  302 (335)
T ss_pred             CEECCC--------------------CCeEEEEeCCCcc-HHHHHHHHHH
Confidence            554322                    3668999987433 3566776664

>PRK06855 aminotransferase; Validated

Probab=99.94  E-value=1.4e-24  Score=221.11  Aligned_cols=231  Identities=16%  Similarity=0.157  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..+||+.||+++    |    ++++++|+|   +++|+.+++. ++.+||.|++.+|.|+.+......    ..|.++..
T Consensus        75 ~~~LReaia~~~~~~~g~~~~~~~I~it~G---~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~----~~g~~~v~  146 (433)
T PRK06855         75 VLETREFLAELNNKRGGAQITPDDIIFFNG---LGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAA----HAGYPPVT  146 (433)
T ss_pred             CHHHHHHHHHHHHhccCCCCCHhHEEEcCc---HHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHH----hcCCeEEE
Confidence            455666666664    3    356899999   9999999885 789999999999999986543211    13555554


Q ss_pred             eCC-------CCHHHHHHhhhc-CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013079          173 VDI-------SDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------  235 (450)
Q Consensus       173 v~~-------~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------  235 (450)
                      ++.       .|+++|++++.. ++++++++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.      
T Consensus       147 v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl  226 (433)
T PRK06855        147 YRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPL  226 (433)
T ss_pred             EecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCH
Confidence            432       278999998832 46899999999999999976   6678888999999999999996664321      


Q ss_pred             cCC---CCeEEEeCCCCccccCccceEEEEEcC-----HH---HHHHHHHHhhhhhhccCCCchHHHHHHHHccC---Cc
Q 013079          236 ARL---GADVVVHSISKFISGGADIIAGAVCGP-----AN---LVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PH  301 (450)
Q Consensus       236 ~~~---g~di~~~S~sK~~g~~g~~igG~l~~~-----~~---~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~  301 (450)
                      ..+   +..+++.|+||.++++|+|+ ||++.+     +.   +++.+.....  .....+.+.+.++..++...   ++
T Consensus       227 ~~~~~~~~~I~~~S~SK~~~~pGlRi-G~ii~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~  303 (433)
T PRK06855        227 SEVIGDVPGIALKGISKELPWPGSRC-GWIEVYNADKDEVFKKYINSILNAKM--IEVCSTTLPQMAIPRIMSHPEYKNY  303 (433)
T ss_pred             HHHcCcCCeEEEecCccccCCCcceE-EEEEEeCCchhhHHHHHHHHHHHhhc--cccCCChHHHHHHHHhhcCCcHHHH
Confidence            111   24589999999999999999 999862     22   2233322211  11233445555555454432   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          302 LGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       302 l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      +.+..+.++++++.+.+.|++++ ..+..|.                   .|.++|+.++.
T Consensus       304 ~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~-------------------gg~~~w~~l~~  345 (433)
T PRK06855        304 LKERNKRYEKRSNIAYEKLKDVPGLKVNRTN-------------------GAFYMTVVFED  345 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeeccCCC-------------------eeEEEeecccc
Confidence            55556667888999999997763 2333232                   46789998874

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.94  E-value=4.4e-25  Score=219.53  Aligned_cols=291  Identities=14%  Similarity=0.119  Sum_probs=201.8

Q ss_pred             ChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhH--HHHHHHhCCCccCeeEEE
Q 013079           98 NPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTF  172 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~--~~~~~~~~~~~~g~~v~~  172 (450)
                      ....+++++.+++++|++   .+++|+|   |++|+.+++.+++.+||+|+++.+.|.+.  ...+.     ..|.++.+
T Consensus        31 ~~~~~~~~~~la~~~g~~~~~~~~~~~~---~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~-----~~g~~~~~  102 (356)
T cd06451          31 LALMDEILEGLRYVFQTENGLTFLLSGS---GTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAE-----RYGADVDV  102 (356)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEecC---cHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHH-----HhCCCeEE
Confidence            355789999999999973   2678999   99999999999999999999998887763  22222     25778877


Q ss_pred             eCCC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEE
Q 013079          173 VDIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVV  244 (450)
Q Consensus       173 v~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~  244 (450)
                      ++.+     |++++++++ ++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++|  +....+....++|+++
T Consensus       103 v~~~~~~~~~~~~l~~~i-~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~  181 (356)
T cd06451         103 VEKPWGEAVSPEEIAEAL-EQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAY  181 (356)
T ss_pred             eecCCCCCCCHHHHHHHH-hccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCccccccccCccEEE
Confidence            7643     789999999 65 8999999999999999999999999999999999999987  4444555566899999


Q ss_pred             eCCCCccccCccceEEEEEcCHHHHHHHHH--Hhhhh-------------hhccCCCchHH--HH-HHHHcc--CCcHHH
Q 013079          245 HSISKFISGGADIIAGAVCGPANLVNSMMD--LHQGA-------------LMLLGPTMNPK--VA-FELSER--IPHLGL  304 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~--~~~~~-------------~~~~g~~~~~~--~a-~~~~~~--~~~l~~  304 (450)
                      .|+||+++++.. + |+++.++++++.+..  ...++             .....++++..  .+ ..++..  ...+..
T Consensus       182 ~s~~K~l~~p~g-~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~  259 (356)
T cd06451         182 TGSQKALGAPPG-L-GPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLEN  259 (356)
T ss_pred             ecCchhccCCCC-c-ceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHH
Confidence            999999997632 4 999888888776653  00000             00111222221  11 111111  122344


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013079          305 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS  384 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs  384 (450)
                      ..++..++++++.+.|++.+..+..+.  .  .            ..+.++++.++.......+.+.|...  +| +.++
T Consensus       260 ~~~~~~~~~~~l~~~L~~~g~~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~L~~~--~g-I~~~  320 (356)
T cd06451         260 RWARHRRLAKALREGLEALGLKLLAKP--E--L------------RSPTVTAVLVPEGVDGDEVVRRLMKR--YN-IEIA  320 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeeccCc--c--c------------CCCceEEEECCCCCCHHHHHHHHHHh--CC-EEEe
Confidence            556667888899999988776554321  0  0            12335567666332355677777642  23 3444


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .|..+                       ..++.||+|++ ..++++.++++.++|.++
T Consensus       321 ~g~~~-----------------------~~~~~iRis~~-~~~~~e~v~~~~~~l~~~  354 (356)
T cd06451         321 GGLGP-----------------------TAGKVFRIGHM-GEATREDVLGVLSALEEA  354 (356)
T ss_pred             ccccc-----------------------ccCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence            33210                       01368999999 888899999999988765

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=6.7e-25  Score=216.43  Aligned_cols=212  Identities=15%  Similarity=0.144  Sum_probs=159.4

Q ss_pred             CCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079           95 RHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ++..+....+|+.+|++++.  +++++|+|   +++++++++..+  +||+|+++.|.|+.+...+.     ..|.++..
T Consensus        51 ~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G---~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~-----~~g~~~~~  120 (337)
T PRK03967         51 RYPHITSDPLREAIAEFYGLDAENIAVGNG---SDELISYLVKLF--EGKHIVITPPTFGMYSFYAK-----LNGIPVID  120 (337)
T ss_pred             cCCCCCHHHHHHHHHHHhCcCcceEEEcCC---HHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHH-----HcCCeEEE
Confidence            33445678899999999984  56899999   999999887765  69999999999997766553     36778877


Q ss_pred             eCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc----c-CCCCeE
Q 013079          173 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----A-RLGADV  242 (450)
Q Consensus       173 v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~----~-~~g~di  242 (450)
                      ++.+     |++.+++++  ++++++++++|+||||.+.+.++|.++++ +++++|+|++|..+....    . .....+
T Consensus       121 v~~~~~~~~d~~~l~~~~--~~~~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi  197 (337)
T PRK03967        121 VPLKEDFTIDGERIAEKA--KNASAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLI  197 (337)
T ss_pred             eecCCCCCcCHHHHHHhc--cCCCEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEE
Confidence            7653     677887754  57889999999999999999999999995 799999999996553211    1 124578


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      +++|+||.++.+|+|+ ||+++++++++.+......   ...+.+.+.++..++...+++.++.+...++++.+.+.|.+
T Consensus       198 ~l~S~SK~~~l~GlRi-G~iv~~~~~i~~~~~~~~~---~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  273 (337)
T PRK03967        198 LLRTFSKAFGLAGIRA-GYAIANEEIIDALYRIKPP---FSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGE  273 (337)
T ss_pred             EEecchHhhcchhhhh-eeeecCHHHHHHHHhhcCC---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999998 9999999999888776541   12233444444444433344445555666777778888765


Q ss_pred             C
Q 013079          323 L  323 (450)
Q Consensus       323 ~  323 (450)
                      +
T Consensus       274 ~  274 (337)
T PRK03967        274 Y  274 (337)
T ss_pred             C
Confidence            3

>PRK05839 hypothetical protein; Provisional

Probab=99.94  E-value=1.1e-24  Score=217.87  Aligned_cols=264  Identities=14%  Similarity=0.103  Sum_probs=176.2

Q ss_pred             hHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079          100 TVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus       100 ~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      .++.+.+.+++..|    .+++++|+|   +++++..++..++  .+||.|+++.|.|+.+...+.     ..|+++..+
T Consensus        65 lr~aia~~l~~~~g~~~~~~~I~it~G---~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~-----~~g~~v~~v  136 (374)
T PRK05839         65 LREAQRGFFKRRFKIELKENELIPTFG---TREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAI-----ASRAKVLLM  136 (374)
T ss_pred             HHHHHHHHHHHHhCCCCCcceEEEecC---cHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHH-----hcCCEEEEe
Confidence            34444444455444    467899999   9999998887764  478999999999999988775     368888887


Q ss_pred             CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc----
Q 013079          174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA----  236 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~----  236 (450)
                      +.+     +++..+..+  +++++|++++||||||.+.+   +++|+++|+++|+++|+||+|..+..+     ..    
T Consensus       137 ~~~~~~~~~~d~~~~~~--~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~  214 (374)
T PRK05839        137 PLTKENDFTPSLNEKEL--QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASI  214 (374)
T ss_pred             ecccccCCcCCcchhhh--ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhc
Confidence            653     122222223  46999999999999999976   667888899999999999998554321     01    


Q ss_pred             -----CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079          237 -----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       237 -----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                           ..+..+++.|+||.|+.+|+|+ ||+++++++++++....... ....+.+.+.++..++...+++....+++.+
T Consensus       215 ~~~~~~~~~vi~~~SfSK~~~~~GlRi-G~ii~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~  292 (374)
T PRK05839        215 LVGNESFKNVLVINSISKRSSAPGLRS-GFIAGDASILKKYKAYRTYL-GCASPLPLQKAAAVAWLDDEHAEFFRNIYAK  292 (374)
T ss_pred             ccCccccCcEEEEeccccccCCcccee-EEEecCHHHHHHHHHHHhhc-CCCCChHHHHHHHHHhccchHHHHHHHHHHH
Confidence                 1246799999999999999999 99999999988887654411 1223344444444344344445555566677


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      +++.+.+.|   +..  .|                   ..|.++|+.+++.   ..|...+..  +.| +.+..|+....
T Consensus       293 ~~~~~~~~l---~~~--~p-------------------~gg~fi~~~~~~~---~~~~~~l~~--~~g-i~v~pg~~f~~  342 (374)
T PRK05839        293 NLKLAREIL---GIT--IP-------------------PATFYVWLPVDND---EEFTKKLYQ--NEG-IKVLPGSFLGR  342 (374)
T ss_pred             HHHHHHHhc---CCC--CC-------------------CeeEEEEEeCCCh---HHHHHHHHH--HCC-EEEeCchhhCC
Confidence            777666554   211  22                   2577899998743   345555532  122 45554432100


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                                         .+..++++|||++ .
T Consensus       343 -------------------~~~~~~~iRis~~-~  356 (374)
T PRK05839        343 -------------------NGIGKGYVRIALV-Y  356 (374)
T ss_pred             -------------------CCCCCCeEEEEec-C
Confidence                               0122589999999 6

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.94  E-value=1.5e-24  Score=216.11  Aligned_cols=274  Identities=13%  Similarity=0.067  Sum_probs=187.8

Q ss_pred             hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      +....|++.||++++.  +++++|+|   +++++.+++..+. +||.|+++.|.|..+...+.     ..|.++..++.+
T Consensus        57 ~~~~~Lr~aia~~~~v~~~~I~it~G---~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~  127 (360)
T PRK07392         57 PDYRELRLALAQHHQLPPEWILPGNG---AAELLTWAGRELA-QLRAVYLITPAFGDYRRALR-----AFGATVKELPLP  127 (360)
T ss_pred             cCHHHHHHHHHHHhCcChhhEEECCC---HHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHH-----HcCCeEEEEecc
Confidence            3456899999999865  56899999   9999999998764 68899999999999988875     357777776543


Q ss_pred             ----------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c----C
Q 013079          177 ----------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-----A----R  237 (450)
Q Consensus       177 ----------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~-----~----~  237 (450)
                                +++++++..  .+++++++++||||||.+.+.++|.++++++++ +|+||+|..+..+.     .    .
T Consensus       128 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~  204 (360)
T PRK07392        128 LDQPSPGLTLRLQTLPPQL--TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAE  204 (360)
T ss_pred             cccCCcccccCHHHHHHhc--cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhc
Confidence                      344444432  468999999999999999999999999999985 66799996654321     1    1


Q ss_pred             CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013079          238 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA  317 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~  317 (450)
                      ....+++.|+||.++.+|+|+ ||+++++++++.+...+..   ...+.+.+.++..++....+.....+.+.++++.+.
T Consensus       205 ~~~vi~i~S~SK~~~l~GlRi-G~~v~~~~~~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~  280 (360)
T PRK07392        205 YPNLIILRSLTKFYSLPGLRL-GYAIAHPDRLQRWQQWRDP---WPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALF  280 (360)
T ss_pred             CCCEEEEEechhhhcCCchhe-eeeeCCHHHHHHHHhhCCC---CCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            135799999999999999999 9999999888887654431   222334444444444332333333345677888899


Q ss_pred             HHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh-hcccccccccccccccccccccc
Q 013079          318 RRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL-QNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       318 ~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l-~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      +.|++++. .+ .|.                   .|.++++.++.  ...++...+ ..   .| +.+..|....     
T Consensus       281 ~~L~~~~~~~~-~~~-------------------~~~fl~~~~~~--~~~~l~~~ll~~---~g-v~v~pg~~f~-----  329 (360)
T PRK07392        281 QGLASLPGLTP-LPS-------------------AANFLLVQSQG--SALQLQEKLLQQ---HR-ILIRDCLSFP-----  329 (360)
T ss_pred             HHHHhCCCcEE-CCC-------------------CCCEEEEEcCC--CHHHHHHHHHhh---CC-EEEEeCCCCC-----
Confidence            99987633 32 222                   46688888764  234565553 32   22 4555443210     


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC-HHHHHHHHH
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQFE  436 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~i~~l~  436 (450)
                                      +..+++||||++ ..+ .+++.+.|.
T Consensus       330 ----------------~~~~~~iRi~~~-~~~~~~~l~~al~  354 (360)
T PRK07392        330 ----------------ELGDRYFRVAVR-TEAENQRLLEALA  354 (360)
T ss_pred             ----------------CCCCCEEEEEeC-CHHHHHHHHHHHH
Confidence                            112579999999 532 334444443

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.94  E-value=1.9e-24  Score=215.70  Aligned_cols=236  Identities=17%  Similarity=0.185  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHh----C-----CCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          102 LNLSRQMAALE----G-----TEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       102 ~~l~~~iA~l~----g-----~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      .++++.+|+++    |     .+++++|+|   +++++..++..+ +++||+|++++|.|+.+...+.     ..|.++.
T Consensus        65 ~~lr~~ia~~l~~~~~~~~~~~~~I~it~G---~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~  136 (364)
T PRK07865         65 PELREAIVGWLARRRGVTGLDPAAVLPVIG---SKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGAR-----LAGATVV  136 (364)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcccEEEccC---hHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHH-----hcCCEEE
Confidence            34555555554    3     356899999   999999988777 7899999999999999887764     3687877


Q ss_pred             EeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----c-------
Q 013079          172 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----A-------  236 (450)
Q Consensus       172 ~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----~-------  236 (450)
                      .++  +++++.    ..++++|++++||||||.+.+   +++|.++|+++|+++|+|++|..+.++.     .       
T Consensus       137 ~~~--~~~~l~----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~  210 (364)
T PRK07865        137 RAD--SLTELG----PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGG  210 (364)
T ss_pred             ecC--ChhhCC----cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCC
Confidence            764  444332    357899999999999999976   6788899999999999999985543321     1       


Q ss_pred             CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079          237 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       237 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l  316 (450)
                      .....++++|+||.++.+|+|+ ||+++++++++.+...+... ....+.+.+.++..++...+++.+..+.+.++++.+
T Consensus       211 ~~~~~i~~~S~SK~~~~~GlRi-G~i~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l  288 (364)
T PRK07865        211 DHTGLLAVHSLSKQSNLAGYRA-GFVAGDPALVAELLEVRKHA-GMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVL  288 (364)
T ss_pred             ccceEEEEeechhccCCCceee-EEEecCHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            1135699999999999999998 99999999998887655411 122233444444334433334555556678888999


Q ss_pred             HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      .+.|++++..+..|.                   .|.++|+.++..  ...+.+.+..
T Consensus       289 ~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~--~~~~~~~l~~  325 (364)
T PRK07865        289 RPALEAAGFRVDHSE-------------------AGLYLWATRGED--CWDTVAWLAE  325 (364)
T ss_pred             HHHHHHcCCcccCCC-------------------ccEEEEEeCCCC--HHHHHHHHHH
Confidence            999988765443332                   345677777521  2345555543

>PLN02231 alanine transaminase

Probab=99.94  E-value=3.5e-24  Score=221.80  Aligned_cols=299  Identities=14%  Similarity=0.093  Sum_probs=197.5

Q ss_pred             CccccCCCChhHHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHH
Q 013079           90 FFIYSRHFNPTVLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTH  160 (450)
Q Consensus        90 ~~~y~r~~~~~~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~  160 (450)
                      .+.|+.  ......+|+.||+++    |    .+++++|+|   +++|+.+++..++. +||.|+++.|.|+.+...+. 
T Consensus       161 ~~~Y~~--s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~G---a~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~-  234 (534)
T PLN02231        161 TGAYSH--SQGIKGLRDAIAAGIEARDGFPADPNDIFLTDG---ASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIA-  234 (534)
T ss_pred             ccCcCC--CCCcHHHHHHHHHHHHhccCCCCCcccEEEeCC---HHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHH-
Confidence            344553  233556777777765    3    367899999   99999999999884 79999999999999988875 


Q ss_pred             hCCCccCeeEEEeCCC-------CHHHHHHhhhcC------CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEE
Q 013079          161 FFPRACNITTTFVDIS-------DHEMVNSAIVQG------RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVV  224 (450)
Q Consensus       161 ~~~~~~g~~v~~v~~~-------d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~liv  224 (450)
                          ..|.++..++.+       |+++|++++ ++      ++++|++.+|+||||.+.+   +++|+++|+++|+++|+
T Consensus       235 ----~~g~~~v~~~l~~~~~~~~d~~~Le~~l-~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~  309 (534)
T PLN02231        235 ----LHGGTLVPYYLDEATGWGLEISELKKQL-EDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLA  309 (534)
T ss_pred             ----HcCCEEEEEecCcccCCCCCHHHHHHHH-HHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence                256666665432       789999888 33      6899999999999999975   77899999999999999


Q ss_pred             eCCCCCCCCCc-------cCC---------C-CeEEEeCCCCcc-ccCccceEEEEEc---CHHHHHHHHHHhhhhhhcc
Q 013079          225 DNTFSPLVLSP-------ARL---------G-ADVVVHSISKFI-SGGADIIAGAVCG---PANLVNSMMDLHQGALMLL  283 (450)
Q Consensus       225 D~~~~~~~~~~-------~~~---------g-~di~~~S~sK~~-g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~  283 (450)
                      ||+|..+.++.       ..+         + ..++++|+||.+ +.+|+|+ ||++.   ++++++.+..... . ...
T Consensus       310 DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRi-Gy~~~~~~~~~l~~~l~k~~~-~-~~~  386 (534)
T PLN02231        310 DEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRG-GYMEVTGFTSDVREQIYKVAS-V-NLC  386 (534)
T ss_pred             EccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccce-EEEEEecCCHHHHHHHHHHHh-h-hcC
Confidence            99996654421       011         1 357889999965 7899998 99865   6788888876543 1 123


Q ss_pred             CCCchHHHHHHHHccC----CcHH-------HHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCc
Q 013079          284 GPTMNPKVAFELSERI----PHLG-------LRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGF  351 (450)
Q Consensus       284 g~~~~~~~a~~~~~~~----~~l~-------~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~  351 (450)
                      .+...+..+..++...    ..+.       ...+.+.++++.+.+.|+++ +..+..|.                   .
T Consensus       387 s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~-------------------G  447 (534)
T PLN02231        387 SNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAE-------------------G  447 (534)
T ss_pred             CChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC-------------------e
Confidence            3444455554444321    1221       12355788889999999887 34544332                   4


Q ss_pred             CcEEEEEe--CCH--HH--------HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEE
Q 013079          352 GGLLCLDM--ETE--EK--------ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVR  419 (450)
Q Consensus       352 g~~~~~~l--~~~--~~--------~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iR  419 (450)
                      |.++|..+  +..  +.        ...+...|..  ..| +++..|+.+.-                    .-....+|
T Consensus       448 gfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~--~~G-V~vvPGs~Fg~--------------------~~g~~~~R  504 (534)
T PLN02231        448 AMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLN--ATG-IVVVPGSGFGQ--------------------VPGTWHFR  504 (534)
T ss_pred             eeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHH--hcC-EEEeCCcccCC--------------------CCCCCeEE
Confidence            55666344  321  10        1123333321  123 56555533210                    00135699


Q ss_pred             EEeCCC--CCHHHHHHHHHHHHHHhhhc
Q 013079          420 MSVGYL--GTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       420 iS~g~~--~~~~~~i~~l~~al~~~~~~  445 (450)
                      ++++ .  +..++.+++|.+.++++.++
T Consensus       505 it~~-~~~e~l~eal~RL~~~~~~~~~~  531 (534)
T PLN02231        505 CTIL-PQEDKIPAIVSRLTEFHKSFMDE  531 (534)
T ss_pred             EEeC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            9998 5  34556677787777776654

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.94  E-value=8.1e-25  Score=237.42  Aligned_cols=352  Identities=15%  Similarity=0.083  Sum_probs=227.8

Q ss_pred             ccCccccCC-HHHH-HHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHh
Q 013079           64 ASATFTVME-PETM-RRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        64 ~att~~~~~-~~~~-~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l  137 (450)
                      +++|+..+. ++++ ..++...++||.+.|..++.....++++|+.+|+++|++    .++||+|   +|+|+++++.++
T Consensus        41 Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsn---aT~alnlva~~l  117 (805)
T PLN02724         41 AGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSG---ATAALKLVGETF  117 (805)
T ss_pred             CCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCC---hHHHHHHHHHHC
Confidence            445554433 4444 455567789998888788878888999999999999973    3699999   999999999887


Q ss_pred             -ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------------C--HHHHHHhhh---------cCCceE
Q 013079          138 -CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------------D--HEMVNSAIV---------QGRTKV  192 (450)
Q Consensus       138 -~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------------d--~~~l~~ai~---------~~~t~l  192 (450)
                       .++||+|+++..+|++....+ ....+ .|+++.+++.+             +  .++|++.+.         .++|++
T Consensus       118 ~~~~gd~Iv~t~~eH~svl~~~-~~a~~-~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~L  195 (805)
T PLN02724        118 PWSSESHFCYTLENHNSVLGIR-EYALE-KGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNL  195 (805)
T ss_pred             CCCCCCeEEEeeccccchHHHH-HHHHH-cCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcce
Confidence             678999999999998887554 44344 68888888754             1  134554420         146789


Q ss_pred             EEEecCCCCcccccCHHHHHHHHHhc--------CCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccc-cCccceEEE
Q 013079          193 LYFESISNPTLAVANIPELSRLAHDK--------GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS-GGADIIAGA  261 (450)
Q Consensus       193 v~i~~~~NptG~v~~l~~I~~la~~~--------gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~  261 (450)
                      |.+.+.+|.||.++|+++|..+++..        ++++++|++|  +...++..++++|+++.|+||++| |.|  + |+
T Consensus       196 Va~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G--~-G~  272 (805)
T PLN02724        196 FAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTG--L-GA  272 (805)
T ss_pred             EEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCC--c-eE
Confidence            99999999999999999876555532        3689999998  677778788899999999999999 556  5 88


Q ss_pred             EEcCHHHHHHHHHHhhhh--------------------hhccCCCchHHHHHHHHccCCc-----HHHHHHHHHHHHHHH
Q 013079          262 VCGPANLVNSMMDLHQGA--------------------LMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIF  316 (450)
Q Consensus       262 l~~~~~~~~~l~~~~~~~--------------------~~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l  316 (450)
                      ++.++++.+.+.....++                    ...-.++++......+..+++.     +....++..++.+++
T Consensus       273 L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l  352 (805)
T PLN02724        273 LLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYV  352 (805)
T ss_pred             EEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            887777665553221111                    0011222222222121122222     233334457788889


Q ss_pred             HHHHHhCC-------CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHh-hcccccccccccc
Q 013079          317 ARRMKKLG-------LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYL-QNYAQFGFMAVSL  385 (450)
Q Consensus       317 ~~~L~~~~-------~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~~~~~l-~~~~~~g~i~vs~  385 (450)
                      .+.|++++       .++..+.... +          +....+++++|.+.+.+   .....+..+ ..   +| |.+..
T Consensus       353 ~~~L~~l~~~~g~~~v~iyg~~~~~-~----------~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~---~g-I~vR~  417 (805)
T PLN02724        353 ANSLRNLKHGNGAPVCVLYGNHTFK-L----------EFHIQGPIVTFNLKRADGSWVGHREVEKLASL---SG-IQLRT  417 (805)
T ss_pred             HHHHHhccCCCCCeEEEEcCCCCCC-C----------CcccccCEEEEEEEcCCCCEeCHHHHHHHHHh---cC-cEEee
Confidence            99998764       2343332000 0          00135789999987421   101112222 22   33 78888


Q ss_pred             ccccccccccccccCCCCCHHHH---------------HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          386 GYYETLMSCSGSSTSSELNAEEK---------------ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       386 G~~~s~~~~~~~~~~~~~~~~~~---------------~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      |..|.-..+.   .+..+..+..               ...+...+.||+|+| ..++.++++.|.++|++.
T Consensus       418 G~~Ca~~~~~---~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g-~ynt~eDvd~lv~~l~~~  485 (805)
T PLN02724        418 GCFCNPGACA---KYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFG-YMSTFEDCQKFIDFIISS  485 (805)
T ss_pred             ccccCchHHH---HHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcC-ccCCHHHHHHHHHHHHHH
Confidence            9777532211   1111111111               001223489999999 999999999999999873

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.94  E-value=7e-24  Score=214.88  Aligned_cols=293  Identities=15%  Similarity=0.152  Sum_probs=201.5

Q ss_pred             hhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           99 PTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      +...+|+++||+++|.+..+++++   |++|+..++..+..  +|+.|++....|.++...+.     ..|.++..++.+
T Consensus        91 ~~~~~Le~~la~~~g~~~~i~~~s---G~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~-----~~g~~~~~~~~~  162 (410)
T PRK13392         91 HPHVLLERELADLHGKESALLFTS---GYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIR-----RSGAEKQVFRHN  162 (410)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECc---HHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHH-----HcCCeEEEEeCC
Confidence            357899999999999888899999   99999988887754  78888887777877766553     257777777666


Q ss_pred             CHHHHHHhhh---cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CC-CCCc--------cCCCCeEE
Q 013079          177 DHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PL-VLSP--------ARLGADVV  243 (450)
Q Consensus       177 d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~-~~~~--------~~~g~di~  243 (450)
                      |.+++++.+.   .+++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+ ++ ....        ..-..|++
T Consensus       163 d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div  242 (410)
T PRK13392        163 DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMI  242 (410)
T ss_pred             CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEE
Confidence            7777766652   2578999999999999999999999999999999999999984 32 1110        01146899


Q ss_pred             EeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCC-chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          244 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       244 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      ++|+||.+|++|    ||+++++++++.++....++....+.. +.+.++..++...+......+++.++++++.+.|++
T Consensus       243 ~~tlsK~~g~~G----G~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~  318 (410)
T PRK13392        243 QGTLAKAFGCLG----GYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNA  318 (410)
T ss_pred             EEEChHhhhccc----chhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999764    888889889888876654321111111 222333334444444444556678888999999988


Q ss_pred             CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCC
Q 013079          323 LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE  402 (450)
Q Consensus       323 ~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~  402 (450)
                      .+..+. |.                   .++++.+.++.......+.+.|..  ..| +.++.+..      |..     
T Consensus       319 ~g~~~~-~~-------------------~~~~~~i~~~~~~~~~~~~~~L~~--~~G-I~v~~~~~------p~~-----  364 (410)
T PRK13392        319 NGIPVM-PS-------------------PSHIVPVMVGDPTLCKAISDRLMS--EHG-IYIQPINY------PTV-----  364 (410)
T ss_pred             cCCCCC-CC-------------------CCCEEEEEeCCHHHHHHHHHHHHH--hCC-EEEeeeCC------CCC-----
Confidence            765432 21                   244666777654445677776642  123 44433211      110     


Q ss_pred             CCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013079          403 LNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       403 ~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~  447 (450)
                               ......||||+. ...+++.++.+.++|.++.+..+
T Consensus       365 ---------~~~~~~lRis~~-~~~t~edid~l~~aL~~~~~~~~  399 (410)
T PRK13392        365 ---------PRGTERLRITPT-PLHDDEDIDALVAALVAIWDRLE  399 (410)
T ss_pred             ---------CCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHcC
Confidence                     011368999998 77777888888888887655433

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.94  E-value=3.4e-24  Score=213.22  Aligned_cols=223  Identities=18%  Similarity=0.156  Sum_probs=159.5

Q ss_pred             CeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEE
Q 013079          115 EAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVL  193 (450)
Q Consensus       115 ~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv  193 (450)
                      +++++|+|   +++++..++..+ +++||.|++++|+|+++...+.     ..|.++..++  +++.    +..+++++|
T Consensus        81 ~~I~it~G---~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~v~--~~~~----l~~~~~~~v  146 (357)
T TIGR03539        81 TAVLPVIG---TKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGAL-----LAGATPVAAD--DPTE----LDPVGPDLI  146 (357)
T ss_pred             CeEEEccC---hHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHH-----hcCCEEeccC--Chhh----cCccCccEE
Confidence            67899999   999999988877 6999999999999998887664     3677777664  4443    324579999


Q ss_pred             EEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc--c----------CCCCeEEEeCCCCccccCccce
Q 013079          194 YFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--A----------RLGADVVVHSISKFISGGADII  258 (450)
Q Consensus       194 ~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--~----------~~g~di~~~S~sK~~g~~g~~i  258 (450)
                      ++++|+||||.+.+   +++|.++|+++|+++|+|++|..+.++.  .          .....++++|+||.++++|+|+
T Consensus       147 ~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~  226 (357)
T TIGR03539       147 WLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRA  226 (357)
T ss_pred             EEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeE
Confidence            99999999999976   6679999999999999999985443221  1          1124699999999999999998


Q ss_pred             EEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchh
Q 013079          259 AGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH  338 (450)
Q Consensus       259 gG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~  338 (450)
                       ||+++++++++.+...+... ....+.+.+.++..++....++....+.+.++++.+.+.|++.+..+..|.       
T Consensus       227 -G~~i~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~p~-------  297 (357)
T TIGR03539       227 -GFVAGDPALVAELLTVRKHA-GLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKAGFRIDHSE-------  297 (357)
T ss_pred             -EEEecCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC-------
Confidence             99999999998887665421 122333344444333333233444455677888889999988765443332       


Q ss_pred             HHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          339 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       339 ~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                                  .|.++++.++.  ....+...|..
T Consensus       298 ------------~~~~~~~~~~~--~~~~~~~~l~~  319 (357)
T TIGR03539       298 ------------AGLYLWATRGE--DAWDTVDRLAE  319 (357)
T ss_pred             ------------ccEEEEEECCC--CHHHHHHHHHh
Confidence                        34577887753  23456666654

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02483 serine palmitoyltransferase

Probab=99.94  E-value=1.8e-23  Score=215.04  Aligned_cols=291  Identities=13%  Similarity=0.152  Sum_probs=202.3

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+..+++|+.||+++|.+..+++++   |+.++..++.+++++||+|++.++.|.++...+.     ..|.++..++.+
T Consensus       144 ~~~~~~ele~~lA~~~g~~~ai~~~~---G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~-----~~Ga~v~~~~~~  215 (489)
T PLN02483        144 TTKLHRELEELVARFVGKPAAIVFGM---GYATNSTIIPALIGKGGLIISDSLNHNSIVNGAR-----GSGATIRVFQHN  215 (489)
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHH-----HcCCeEEEEeCC
Confidence            36788999999999999988888888   9998888888899999999999999999887764     368899888888


Q ss_pred             CHHHHHHhhhc------CCc-----e-EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC--CCC---------
Q 013079          177 DHEMVNSAIVQ------GRT-----K-VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVL---------  233 (450)
Q Consensus       177 d~~~l~~ai~~------~~t-----~-lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~--~~~---------  233 (450)
                      |++++++.+++      ++|     + +|+++.+.|++|.+.++++|+++|+++|+++++||+|+-  +..         
T Consensus       216 d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~  295 (489)
T PLN02483        216 TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELL  295 (489)
T ss_pred             CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhc
Confidence            88888776621      222     4 666778889999999999999999999999999999831  111         


Q ss_pred             CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCC-C-chHHHHHHHHc---c---CCcHHHH
Q 013079          234 SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP-T-MNPKVAFELSE---R---IPHLGLR  305 (450)
Q Consensus       234 ~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~-~-~~~~~a~~~~~---~---~~~l~~~  305 (450)
                      .....++|++++|+||.+|+.|    ||+++++++++.+........ ..+. . +....+..++.   .   .+...++
T Consensus       296 ~v~~~~~dI~~~SfSKs~g~~G----G~i~~~~~li~~l~~~~~~~~-~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~  370 (489)
T PLN02483        296 GVDPADVDIMMGTFTKSFGSCG----GYIAGSKELIQYLKRTCPAHL-YATSMSPPAVQQVISAIKVILGEDGTNRGAQK  370 (489)
T ss_pred             CCCcccCcEEEEecchhcccCc----eEEEcCHHHHHHHHHhCcccc-ccCCcCHHHHHHHHHHHHHHHhCccccchHHH
Confidence            1111257999999999999764    999999999998876533111 1111 1 11111212221   1   1233456


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc
Q 013079          306 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL  385 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~  385 (450)
                      .++++++++++.+.|+++++.+..+.                   .++++++.+........|.+.|...   | +.+..
T Consensus       371 ~~~l~~~~~~l~~~L~~~G~~v~~~~-------------------~sp~~~l~l~~~~~~~~~~~~Ll~~---G-I~v~~  427 (489)
T PLN02483        371 LAQIRENSNFFRSELQKMGFEVLGDN-------------------DSPVMPIMLYNPAKIPAFSRECLKQ---N-VAVVV  427 (489)
T ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCC-------------------CCCEEEEEECCHHHHHHHHHHHHHC---C-cEEee
Confidence            67789999999999998876443221                   2347777776544566777776642   3 34332


Q ss_pred             ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       386 G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      .+.      |+.              ....+.+||+++ ...+++.++.+.++|+++.+
T Consensus       428 ~~f------p~~--------------p~~~~~vRi~is-a~~t~edId~~l~~L~~~~~  465 (489)
T PLN02483        428 VGF------PAT--------------PLLLARARICIS-ASHSREDLIKALEVISEVGD  465 (489)
T ss_pred             eCC------CCC--------------CCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence            111      110              011367999999 76666666666666665533

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.94  E-value=4.7e-24  Score=215.52  Aligned_cols=245  Identities=14%  Similarity=0.162  Sum_probs=165.6

Q ss_pred             ChhHHHHHHHHHHHh---C--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCe----
Q 013079           98 NPTVLNLSRQMAALE---G--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI----  168 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~---g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~----  168 (450)
                      .+....+++.+|+++   +  .+++++|+|   +++++.++ ..++.+||+|++++|+|..+...+.     ..|.    
T Consensus        74 ~~g~~~lr~aia~~~~~~~~~~d~I~it~G---a~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~g~~~~~  144 (402)
T TIGR03542        74 EQGYPFLREAIAENDYRGRIDPEEIFISDG---AKCDVFRL-QSLFGSDNTVAVQDPVYPAYVDSNV-----MAGRAGVL  144 (402)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCHHHEEECCC---cHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHHH-----HcCCcccc
Confidence            345667888888864   2  467899999   99999985 4567889999999999999987775     2465    


Q ss_pred             -------eEEEeCCCCHHHHHHhh-hcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc--
Q 013079          169 -------TTTFVDISDHEMVNSAI-VQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--  235 (450)
Q Consensus       169 -------~v~~v~~~d~~~l~~ai-~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--  235 (450)
                             ++.+++.+..+.+...+ ...++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+..+.  
T Consensus       145 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~  224 (402)
T TIGR03542       145 DDDGRYSKITYLPCTKENNFIPDLPEEPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSL  224 (402)
T ss_pred             ccccccceEEEeecchhhCCCCCccccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCC
Confidence                   77776653211111112 1257899999999999999987   7789999999999999999996553221  


Q ss_pred             -c---CC----CCeEEEeCCCCccccCccceEEEEEcCHHHH--------HHHHHHhhhhhhcc-CCCchHHHHHHHHcc
Q 013079          236 -A---RL----GADVVVHSISKFISGGADIIAGAVCGPANLV--------NSMMDLHQGALMLL-GPTMNPKVAFELSER  298 (450)
Q Consensus       236 -~---~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~--------~~l~~~~~~~~~~~-g~~~~~~~a~~~~~~  298 (450)
                       .   .+    +..++++|+||.+|.+|+|+ ||++++++++        ..+.....  .... .+.+.+.++..++..
T Consensus       225 ~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRi-G~~i~~~~l~~~~~~~~~~~~~~~~~--~~~~~~s~~~q~~~~~~l~~  301 (402)
T TIGR03542       225 PHSIFEIPGAKECAIEFRSFSKTAGFTGVRL-GWTVVPKELTYADGHSVIQDWERRQC--TKFNGASYPVQRAAEAAYAG  301 (402)
T ss_pred             CcchhhCCCCcccEEEEecCccccCCCCcce-EEEEecHHHhhcchhhHHHHHHHHhh--hcccCCCHHHHHHHHHHHcC
Confidence             1   11    24688999999999999999 9999998876        22211111  0111 233444444333332


Q ss_pred             --CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013079          299 --IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ  373 (450)
Q Consensus       299 --~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~  373 (450)
                        ..++.+..+.+.++++.+.+.|++++..+..|                   ..|.++|+.++.......+...+.
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-------------------~~~~f~~v~l~~~~~~~~l~~~l~  359 (402)
T TIGR03542       302 EGLQPILEAISYYMENARILRKALEAAGFKVYGG-------------------EHAPYLWVKTPEGISSWDFFDFLL  359 (402)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhcCceecCC-------------------CceeEEEEECCCCCCHHHHHHHHH
Confidence              22344445567888889999998876443322                   146689999984322345665543

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.93  E-value=2e-24  Score=215.40  Aligned_cols=249  Identities=20%  Similarity=0.255  Sum_probs=182.6

Q ss_pred             ccccCCCChhHHHHHHHHHHHhC--------CC-eEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHH
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEG--------TE-AAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTH  160 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g--------~~-~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~  160 (450)
                      +.|+..  .....+++.||++++        .+ .+++++|   ..+++..++..+ ..+||.|+++.|.|+.+...++ 
T Consensus        38 ~~Y~~~--~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G---~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~-  111 (363)
T PF00155_consen   38 LGYPPP--QGYPELREAIADFLGRRYGVPVDPEANILVTSG---AQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAAR-  111 (363)
T ss_dssp             TSSTCT--THHHHHHHHHHHHHHHHHTHHTTGGEGEEEESH---HHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHH-
T ss_pred             ccCCCc--hhhHHHHHHHHHHhhhccCcccccceEEEEecc---cccchhhhhhcccccccccceecCCcccccccccc-
Confidence            445532  347889999999988        56 6777777   777777777777 6789999999999999998886 


Q ss_pred             hCCCccCeeEEEeC-------CCCHHHHHHhhhcC------CceEEEEecCCCCcccccCHH---HHHHHHHhcCCEEEE
Q 013079          161 FFPRACNITTTFVD-------ISDHEMVNSAIVQG------RTKVLYFESISNPTLAVANIP---ELSRLAHDKGVTVVV  224 (450)
Q Consensus       161 ~~~~~~g~~v~~v~-------~~d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~---~I~~la~~~gi~liv  224 (450)
                          ..|.++..++       ..|+++|++.+ ++      ++++|++++|+||||.+.+.+   +|+++|+++|+++|+
T Consensus       112 ----~~g~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~  186 (363)
T PF00155_consen  112 ----LLGAEVIPVPLDSENDFHLDPEALEEAL-DELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIV  186 (363)
T ss_dssp             ----HTTSEEEEEEEEETTTTEETHHHHHHHH-HTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEE
T ss_pred             ----ccCceeeecccccccccccccccccccc-ccccccccccceeeecccccccccccccccccchhhhhcccccceee
Confidence                3577777776       23899999988 54      578999999999999997655   555559999999999


Q ss_pred             eCCCCCCCCCcc---------CC-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHH
Q 013079          225 DNTFSPLVLSPA---------RL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE  294 (450)
Q Consensus       225 D~~~~~~~~~~~---------~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~  294 (450)
                      |++|..+.+...         +. ...+++.|+||.+|.+|+|+ ||++.++++++.+.......   ..+.+.+..+..
T Consensus       187 De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRv-G~i~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~  262 (363)
T PF00155_consen  187 DEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRV-GYIVAPPELIERLRRFQRSG---LSSSPMQAAAAA  262 (363)
T ss_dssp             EETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTE-EEEEEEHHHHHHHHHHHHHT---TSSHHHHHHHHH
T ss_pred             eeceeccccCCCccCcccccccccccceeeeecccccccccccc-ccccchhhhhhhhhhccccc---cccchhhHHHHH
Confidence            999966544311         11 24699999999999999999 99988999998888766521   223333333333


Q ss_pred             HHccCC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHH
Q 013079          295 LSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN  370 (450)
Q Consensus       295 ~~~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~  370 (450)
                      .+....    ++.++.+++.++++.+.+.|++.+..+..+.                   .|.++++.++.. +...|.+
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~-~~~~l~~  322 (363)
T PF00155_consen  263 ALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPE-------------------AGFFLWVRLDPN-DAEELAQ  322 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHS-------------------BSSEEEEEESHH-HHHHHHH
T ss_pred             hhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeecc-------------------CccEEEEEcccc-hHHHHHH
Confidence            333222    5666777789999999999998877665432                   455777777744 4566777


Q ss_pred             Hhhc
Q 013079          371 YLQN  374 (450)
Q Consensus       371 ~l~~  374 (450)
                      .|..
T Consensus       323 ~L~~  326 (363)
T PF00155_consen  323 ELLE  326 (363)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6664

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.93  E-value=2.7e-23  Score=210.12  Aligned_cols=293  Identities=16%  Similarity=0.159  Sum_probs=198.2

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ..+...+|++.||+++|.+.++++++   |++|+..++..+..  +++.|++....|.+....+.     ..|.++..++
T Consensus        88 ~~~~~~~Le~~la~~~g~~~~l~~~s---G~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~-----~~g~~~~~~~  159 (402)
T TIGR01821        88 TNIPHVELEAELADLHGKESALVFTS---GYVANDATLATLAKIIPGCVIFSDELNHASMIEGIR-----HSGAEKFIFR  159 (402)
T ss_pred             CcHHHHHHHHHHHHHhCCCeEEEECc---hHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHH-----HcCCeEEEEC
Confidence            36778999999999999888999999   99999999987764  56666666556665555553     2566766666


Q ss_pred             CCCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC-----cc--C--CCCe
Q 013079          175 ISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-----PA--R--LGAD  241 (450)
Q Consensus       175 ~~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~-----~~--~--~g~d  241 (450)
                      ..|++++++.+..   +++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+ ++...     ..  .  ...|
T Consensus       160 ~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~d  239 (402)
T TIGR01821       160 HNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRID  239 (402)
T ss_pred             CCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCe
Confidence            6788888887731   368999999999999999999999999999999999999983 22110     00  1  1368


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCc-hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM-NPKVAFELSERIPHLGLRMKEHCHRALIFARRM  320 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L  320 (450)
                      ++++|++|.+|+.|    ||+++++++++.+.....+.....+..+ .+.++..++..++......++..++++++.+.|
T Consensus       240 iv~~t~sKa~g~~G----G~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L  315 (402)
T TIGR01821       240 IIEGTLAKAFGVVG----GYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLL  315 (402)
T ss_pred             EEEEechhhhccCC----ceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999764    8999998888888654432211111222 222222333333333444455678888999999


Q ss_pred             HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccC
Q 013079          321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS  400 (450)
Q Consensus       321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~  400 (450)
                      ++++.++..+                    .++++.+.++....+..+.+.|..  +.| +.++...      .|..   
T Consensus       316 ~~~g~~~~~~--------------------~~~i~~i~~~~~~~a~~~~~~L~~--~~G-i~v~~~~------~p~~---  363 (402)
T TIGR01821       316 EALGIPVIPN--------------------PSHIVPVIIGDAALCKKVSDLLLN--KHG-IYVQPIN------YPTV---  363 (402)
T ss_pred             HHcCCCcCCC--------------------CCCEEEEEeCCHHHHHHHHHHHHh--cCC-EEEEeEC------CCCC---
Confidence            8876543211                    245778877654446677777642  123 3333211      1110   


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       401 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                                 ......||||+. ...+++.++.+.++|+++.+.
T Consensus       364 -----------~~g~~~lRis~~-~~~t~edi~~~~~~l~~~~~~  396 (402)
T TIGR01821       364 -----------PRGTERLRITPT-PAHTDKMIDDLVEALLLVWDR  396 (402)
T ss_pred             -----------CCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHH
Confidence                       011357999998 777777788887777766543

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.93  E-value=7.8e-24  Score=211.71  Aligned_cols=313  Identities=13%  Similarity=0.112  Sum_probs=213.2

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhcc-
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCS-  139 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~-  139 (450)
                      .++|++.+. .+.+.+++...++++..   |. ......+++++.+|+++|.+  .+++|+|   |++++..++..+.. 
T Consensus        27 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~g---gt~a~~~a~~~~~~~   99 (371)
T PRK13520         27 SMCTEPHPIARKAHEMFLETNLGDPGL---FP-GTAKLEEEAVEMLGELLHLPDAYGYITSG---GTEANIQAVRAARNL   99 (371)
T ss_pred             eeecCchHHHHHHHHHHHhcCCCCccc---Cc-cHHHHHHHHHHHHHHHhCCCCCCeEEecC---cHHHHHHHHHHHHhh
Confidence            336666666 47777777766666532   21 23344589999999999974  4689999   99999999877643 


Q ss_pred             ---CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHH
Q 013079          140 ---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL  211 (450)
Q Consensus       140 ---~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I  211 (450)
                         ++++|++++++|.++...+.     ..|+++..++.+     |+++|++++ ++++++|++.+++|+||.+.|+++|
T Consensus       100 ~~~~~~~vl~~~~~h~s~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~vi~~~~~~~tG~~~~l~~I  173 (371)
T PRK13520        100 AKAEKPNIVVPESAHFSFDKAAD-----MLGVELRRAPLDDDYRVDVKAVEDLI-DDNTIGIVGIAGTTELGQVDPIPEL  173 (371)
T ss_pred             ccCCCceEEecCcchHHHHHHHH-----HcCceEEEecCCCCCcCCHHHHHHHH-hhCCEEEEEEcCCcCCcccCCHHHH
Confidence               47899999999998776653     257788887653     899999999 7778888888889999999999999


Q ss_pred             HHHHHhcCCEEEEeCCCCCCC---------CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh--
Q 013079          212 SRLAHDKGVTVVVDNTFSPLV---------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL--  280 (450)
Q Consensus       212 ~~la~~~gi~livD~~~~~~~---------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~--  280 (450)
                      .++|+++|+++|+|++|+.+.         ++....++|.++.|.||+.. .+.++|++++.++++++.+........  
T Consensus       174 ~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~-a~~~~G~~~~~~~~~~~~l~~~~~~~~~~  252 (371)
T PRK13520        174 SKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGL-APIPAGGILFRDESYLDALAVDTPYLTSK  252 (371)
T ss_pred             HHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccC-ccCCceEEEEcCHHHHHhhcccCccccCC
Confidence            999999999999999984322         11122478999999999765 344564555677777766532111000  


Q ss_pred             ---hccC--CCchHHHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          281 ---MLLG--PTMNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       281 ---~~~g--~~~~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                         ...|  +......+..++..+  +.+.++.++..++++++.+.|++.++++..+.                   ..+
T Consensus       253 ~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~  313 (371)
T PRK13520        253 KQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIEP-------------------VLN  313 (371)
T ss_pred             CCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCC-------------------Cce
Confidence               0011  111222233333222  23455667788889999999988876533221                   233


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      ++.|.+++   ...+.+.|...   | +.++.+.                          .++.||||++ ..+++++++
T Consensus       314 ~v~~~~~~---~~~v~~~L~~~---g-i~v~~~~--------------------------~~~~iRis~~-~~~t~edi~  359 (371)
T PRK13520        314 IVAFDDPN---PDEVREKLRER---G-WRVSVTR--------------------------CPEALRIVCM-PHVTREHIE  359 (371)
T ss_pred             EEEEecCC---HHHHHHHHHHC---C-ceeccCC--------------------------CCCEEEEEEE-CCCCHHHHH
Confidence            78888874   34566666542   2 3443210                          1357999999 788888899


Q ss_pred             HHHHHHHHhh
Q 013079          434 QFEKALSRMQ  443 (450)
Q Consensus       434 ~l~~al~~~~  443 (450)
                      .+.++|+++.
T Consensus       360 ~~~~~l~~~~  369 (371)
T PRK13520        360 NFLEDLKEVK  369 (371)
T ss_pred             HHHHHHHHHh
Confidence            9988887653

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.93  E-value=3e-23  Score=208.61  Aligned_cols=295  Identities=16%  Similarity=0.121  Sum_probs=200.5

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      |.+-+...+..+++++++++++|.+..+++++   |++++..++..++++||.|++..+.|+++...+.     ..|.++
T Consensus        70 ~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~s---G~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~-----~~g~~~  141 (385)
T TIGR01825        70 VRTIAGTLRLHEELEEKLAKFKKTEAALVFQS---GFNTNQGVLSALLRKGDIVLSDELNHASIIDGLR-----LTKATK  141 (385)
T ss_pred             cCcccCCcHHHHHHHHHHHHHhCCCcEEEECc---HHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHH-----hcCCce
Confidence            44444456789999999999999877777788   8899998998899999999999999998876654     246677


Q ss_pred             EEeCCCCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC----------ccC
Q 013079          171 TFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS----------PAR  237 (450)
Q Consensus       171 ~~v~~~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~----------~~~  237 (450)
                      ..++..|++++++.+..   +++++|++++++|+||.+.|+++|.++|+++|+++|+|++|..+.+.          ...
T Consensus       142 ~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  221 (385)
T TIGR01825       142 KIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE  221 (385)
T ss_pred             EEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC
Confidence            77766788888887732   36899999999999999999999999999999999999999432111          112


Q ss_pred             CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCch-HHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079          238 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN-PKVAFELSERIPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~~l  316 (450)
                      .+.|+++.|+||+++++|    ||+++++++++.+..............+. +.++..++..+....+..++..++++++
T Consensus       222 ~~~~i~~~s~sK~~~~~g----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l  297 (385)
T TIGR01825       222 DKVDIQVGTLSKAIGVVG----GYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFF  297 (385)
T ss_pred             cCCcEEEEeccHHhhcCC----CEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            367899999999998654    89999988888876543211111111212 2222223322222223455667788999


Q ss_pred             HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccc
Q 013079          317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG  396 (450)
Q Consensus       317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~  396 (450)
                      .+.|++.+.++..|.                    ++++.+.++.......|...|...   | +.++.+..      +.
T Consensus       298 ~~~L~~~g~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~L~~~---g-i~v~~~~~------~~  347 (385)
T TIGR01825       298 KAGLGKLGYDTGGSE--------------------TPITPVVIGDEKAAQEFSRRLFDE---G-IFAQSIVF------PT  347 (385)
T ss_pred             HHHHHHcCCCCCCCC--------------------CCEEEEEECCHHHHHHHHHHHHHC---C-cEEcccCC------CC
Confidence            999988765543221                    236666666443456677776542   3 33331111      00


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          397 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .              ......||+++. ...+++.++.+.+++.++
T Consensus       348 ~--------------~~~~~~iRi~~~-~~~~~e~i~~~~~~l~~~  378 (385)
T TIGR01825       348 V--------------PRGTARIRNIPT-AEHTKDDLDQALDAYEKV  378 (385)
T ss_pred             C--------------CCCCceEEEEEc-CCCCHHHHHHHHHHHHHH
Confidence            0              011367999998 656666666666666554

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.93  E-value=2.3e-23  Score=195.60  Aligned_cols=215  Identities=15%  Similarity=0.187  Sum_probs=165.3

Q ss_pred             ChhHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           98 NPTVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ...+..+|+++|++++        ++.+++|+|   .++||.+++.++.+||..|++++|.|+-+...+.     ..|++
T Consensus       102 s~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsG---C~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~-----~~~lE  173 (447)
T KOG0259|consen  102 SVGILPARRAVAEYLNRDLPNKLTADDVVLTSG---CSQAIELAISSLANPGANILLPRPGFPLYDTRAI-----YSGLE  173 (447)
T ss_pred             ccccHHHHHHHHHHhhcCCCCccCcCceEEecc---chHHHHHHHHHhcCCCCceecCCCCCchHHHhhh-----hcCce
Confidence            4456778899999854        567899999   9999999999999999999999999998876654     47899


Q ss_pred             EEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc---
Q 013079          170 TTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA---  236 (450)
Q Consensus       170 v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~---  236 (450)
                      +++++..       |++.++..+ +++|.+++|.+|+||.|.+..   +++|+++|+++|+++|.||+|+++.+.-.   
T Consensus       174 VR~ydlLPe~~weIDL~~veal~-DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfv  252 (447)
T KOG0259|consen  174 VRYYDLLPEKDWEIDLDGVEALA-DENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFV  252 (447)
T ss_pred             eEeecccCcccceechHHHHHhh-ccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCcc
Confidence            9988753       899999988 999999999999999999965   88999999999999999999976654211   


Q ss_pred             ------CCCCeEEEeCCCCccccCccceEEEEEcCH--------HHHHHHHHHhhhhhhccCCCchHHHHH-HHHc-cC-
Q 013079          237 ------RLGADVVVHSISKFISGGADIIAGAVCGPA--------NLVNSMMDLHQGALMLLGPTMNPKVAF-ELSE-RI-  299 (450)
Q Consensus       237 ------~~g~di~~~S~sK~~g~~g~~igG~l~~~~--------~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~-~~-  299 (450)
                            ..-..+.++|.||.+-.||||+ ||++..+        ..++.+....+   ...++....++|. ..+. .- 
T Consensus       253 pmg~fssiVPVitlggisKrW~VPGWRl-GWi~~hD~~gvf~~~~~~q~~~~~~~---~~~~p~TiiQ~AlP~IL~kTp~  328 (447)
T KOG0259|consen  253 PMGKFSSIVPVITLGGISKRWIVPGWRL-GWIALHDPRGVFRDTKVVQGIKNFLD---IIPGPATIIQGALPDILEKTPE  328 (447)
T ss_pred             chhhccccCceEeecccccccccCCcee-eeEEEecccccccchHHHHHHHHHHh---ccCCccHhHHHHhHHHHHhChH
Confidence                  1136789999999999999999 9986431        23455555444   2334333333332 2222 22 


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          300 PHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       300 ~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      +.+..+..-++.+++...++|+++|.
T Consensus       329 efF~k~~~~lk~na~l~y~~Lk~IP~  354 (447)
T KOG0259|consen  329 EFFDKKLSFLKSNADLCYSRLKDIPC  354 (447)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence            23455666678899999999998764

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.93  E-value=4.8e-23  Score=207.88  Aligned_cols=290  Identities=13%  Similarity=0.150  Sum_probs=199.2

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+.++++++.+++++|.+..+++++   |++++..++.+++++||+|++++|.|+++...+.     ..+.++..++..
T Consensus        85 ~~~l~~~l~~~la~~~g~~~~i~~ts---G~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~  156 (397)
T PRK06939         85 TQDLHKELEEKLAKFLGTEDAILYSS---CFDANGGLFETLLGKEDAIISDALNHASIIDGVR-----LCKAKRYRYANN  156 (397)
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEEcC---hHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHH-----hcCCceEEeCCC
Confidence            35678899999999999887788888   8889999999999999999999999999887764     245666677667


Q ss_pred             CHHHHHHhhhc---C--CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CC-CCC----c--cCC--CCe
Q 013079          177 DHEMVNSAIVQ---G--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PL-VLS----P--ARL--GAD  241 (450)
Q Consensus       177 d~~~l~~ai~~---~--~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~-~~~----~--~~~--g~d  241 (450)
                      |++++++.+..   +  ++++|++++++|++|.+.++++|.++|+++|+++|+|++|. .+ ...    +  ..+  ++|
T Consensus       157 d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~  236 (397)
T PRK06939        157 DMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVD  236 (397)
T ss_pred             CHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCc
Confidence            89998888721   3  78899988899999999999999999999999999999993 22 211    0  112  468


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH--H-HHHHHccCCcHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK--V-AFELSERIPHLGLRMKEHCHRALIFAR  318 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~--~-a~~~~~~~~~l~~~~~~~~~~~~~l~~  318 (450)
                      ++++|+||++++  .++ ||+++++++++.+.......  ..+++..+.  . +..++..+.......+++.++++.+.+
T Consensus       237 i~~~S~sK~~~g--~r~-G~v~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~  311 (397)
T PRK06939        237 IITGTLGKALGG--ASG-GYTAGRKEVIDWLRQRSRPY--LFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFRE  311 (397)
T ss_pred             EEEEECHHHhCc--cCc-eEEEeCHHHHHHHHHhCccc--cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            999999999963  365 99999998888876543211  122222222  2 111222222234455667888899999


Q ss_pred             HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccc
Q 013079          319 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS  398 (450)
Q Consensus       319 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~  398 (450)
                      .|++++..+..|                    .++++.+.++.......|...|...   | +.+..+..      +.  
T Consensus       312 ~L~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~L~~~---g-I~v~~~~~------~~--  359 (397)
T PRK06939        312 GMTAAGFTLGPG--------------------EHPIIPVMLGDAKLAQEFADRLLEE---G-VYVIGFSF------PV--  359 (397)
T ss_pred             HHHHcCCCcCCC--------------------CCCEEEEEECCHHHHHHHHHHHHHC---C-ceEeeeCC------CC--
Confidence            998876533211                    2346666666544466787777652   3 44442110      00  


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       399 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                                  .+-..+.||++++ ...+++.++.+.+.|.++.+
T Consensus       360 ------------~~~~~~~iRi~~~-~~~~~~~i~~~l~~L~~~~~  392 (397)
T PRK06939        360 ------------VPKGQARIRTQMS-AAHTKEQLDRAIDAFEKVGK  392 (397)
T ss_pred             ------------CCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHH
Confidence                        0011367999998 65556666666666665543

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.93  E-value=4.8e-23  Score=206.78  Aligned_cols=300  Identities=16%  Similarity=0.159  Sum_probs=200.0

Q ss_pred             ccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079           93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ||+..  ...+||+++|+++|.+.++++++   |+.++..++.+++++||+|++.++.|.++...+.     ..+.++.+
T Consensus        39 yg~~~--~~~~LE~~lA~~~g~e~al~~~s---G~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~-----l~~~~~~~  108 (392)
T PLN03227         39 YGTID--AHLELEQCMAEFLGTESAILYSD---GASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVS-----LSRANVRW  108 (392)
T ss_pred             cCChH--HHHHHHHHHHHHhCCCcEEEecC---cHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHH-----HcCCeEEE
Confidence            77654  78999999999999999999999   9999999999999999999999999999877652     23457777


Q ss_pred             eCCCCHHHHHH---hhh----------cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCC-----
Q 013079          173 VDISDHEMVNS---AIV----------QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLV-----  232 (450)
Q Consensus       173 v~~~d~~~l~~---ai~----------~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~-----  232 (450)
                      ++..|++++++   .+.          ++++++|++|+++|++|.+.|+++|.++|+++|+++|+||+++  .+.     
T Consensus       109 ~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g  188 (392)
T PLN03227        109 FRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRG  188 (392)
T ss_pred             eCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCc
Confidence            77666665554   331          1368899999999999999999999999999999999999984  121     


Q ss_pred             ------CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH---HHHHHHccCCcHH
Q 013079          233 ------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK---VAFELSERIPHLG  303 (450)
Q Consensus       233 ------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~---~a~~~~~~~~~l~  303 (450)
                            ..| ..++|+++.|++|.+|+.    ||++++++++++.+.....+ . ..+..+++.   ++..++......+
T Consensus       189 ~~~~~g~~p-~~~~Div~~slsk~~g~~----gg~v~~~~~~~~~~~~~~~~-~-~~~~~~~p~~~~aa~~al~~~~~~~  261 (392)
T PLN03227        189 SLEHAGLKP-MVHAEIVTFSLENAFGSV----GGMTVGSEEVVDHQRLSGSG-Y-CFSASAPPFLAKADATATAGELAGP  261 (392)
T ss_pred             HHHHcCCCC-CCCceEEEeechhhhhcc----CcEEecCHHHHHHHHHhCcC-c-cccCCCCHHHHHHHHHHHHHHhcCH
Confidence                  112 236799999999998854    48888898888766543221 1 233332222   2222332222234


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeeCC---CCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH---------HHHHHHH
Q 013079          304 LRMKEHCHRALIFARRMKKLGLKVLYP---GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK---------ANRLMNY  371 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p---~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~---------~~~~~~~  371 (450)
                      .+.++..++.+++.+.|++.+......   ++.-            .....|+++.+.+.+...         ...+.+.
T Consensus       262 ~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~------------~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~  329 (392)
T PLN03227        262 QLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVI------------TSDPISPIIYLRLSDQEATRRTDETLILDQIAHH  329 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccccccccccc------------CCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHH
Confidence            567778888999999998643211000   0000            000246789999975322         2356666


Q ss_pred             hhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          372 LQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       372 l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      +..   .|++....|.. .....+                -+++..||+++. ...+++.++.+.++|+++
T Consensus       330 ~~~---~Gi~~~~~~~~-~~~~~~----------------~~P~~~iR~~~~-~~~t~eei~~~~~~l~~~  379 (392)
T PLN03227        330 SLS---EGVAVVSTGGH-VKKFLQ----------------LVPPPCLRVVAN-ASHTREDIDKLLTVLGEA  379 (392)
T ss_pred             HHH---CCCEEEecccc-cCCcCC----------------CCCCceEEEEec-CCCCHHHHHHHHHHHHHH
Confidence            654   23222222211 000001                123567999999 877777777766666654

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.93  E-value=7.1e-23  Score=207.21  Aligned_cols=291  Identities=17%  Similarity=0.174  Sum_probs=199.5

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      .+..++++++||+++|.+.+++++|   |++|+..++..+.+  +|+.|++....|.++...+.     ..|.++..++.
T Consensus        89 ~~~~~~le~~la~~~g~~~~~~~~S---G~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~-----~~g~~~~~~~~  160 (406)
T PRK13393         89 NHYHVLLEAELADLHGKEAALLFTS---GYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIR-----HSRAEKRIFRH  160 (406)
T ss_pred             hHHHHHHHHHHHHHhCCCcEEEeCC---cHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHH-----HcCCeEEEeCC
Confidence            4578999999999999999999999   99999999987765  67877777777877776664     24667777777


Q ss_pred             CCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC-------c--cCCCCeE
Q 013079          176 SDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS-------P--ARLGADV  242 (450)
Q Consensus       176 ~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~-------~--~~~g~di  242 (450)
                      .|++++++.+..   +++++|++++++|++|.+.|+++|.++|+++|+++|+|++|+ ++...       .  .....|+
T Consensus       161 ~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i  240 (406)
T PRK13393        161 NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTI  240 (406)
T ss_pred             CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeE
Confidence            788888877731   367899999999999999999999999999999999999983 33110       0  1113589


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCch-HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN-PKVAFELSERIPHLGLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~  321 (450)
                      +++|++|.+|+.|    ||+++++++++.+.....++....+..+. ..++..++..++.......++.++++++.+.|+
T Consensus       241 ~~~tlsKa~g~~G----G~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~  316 (406)
T PRK13393        241 IEGTLAKAFGVMG----GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLD  316 (406)
T ss_pred             EEEeCchhhcccC----ceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999764    89999988888876654322111112221 222323333332222333456778889999998


Q ss_pred             hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCC
Q 013079          322 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS  401 (450)
Q Consensus       322 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~  401 (450)
                      +.+..+. +                   +.|+++.+.+.+...+..+.+.|...  .| +.++.+.      .|...   
T Consensus       317 ~~g~~~~-~-------------------~~~~i~~v~~~~~~~~~~l~~~L~~~--~G-i~v~~~~------~p~~p---  364 (406)
T PRK13393        317 KAGIPHL-P-------------------NPSHIVPVMVGDPVLCKQISDELLDR--YG-IYVQPIN------YPTVP---  364 (406)
T ss_pred             HcCCCcC-C-------------------CCCCeEEEEeCCHHHHHHHHHHHHHh--CC-EEEEeEC------CCCCC---
Confidence            7654322 1                   24557777776544456677766531  23 3433321      11110   


Q ss_pred             CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       402 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                                 ...+.||||++ ...++++++.+.++|.++.+
T Consensus       365 -----------~g~~~iRis~~-~~~t~edid~l~~~l~~~~~  395 (406)
T PRK13393        365 -----------RGTERLRITPS-PLHTDADIEHLVQALSEIWA  395 (406)
T ss_pred             -----------CCCceEEEEEC-CCCCHHHHHHHHHHHHHHHH
Confidence                       11367999999 88888888888888877643

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.93  E-value=2.2e-23  Score=211.71  Aligned_cols=296  Identities=16%  Similarity=0.122  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhcc-----CCCEEEE-eCCCchhHHHHHHHhCC-Cc
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCS-----SGGHVVA-ARTLYGGTHALLTHFFP-RA  165 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~-----~gd~Vi~-~~~~y~~~~~~~~~~~~-~~  165 (450)
                      ...||+.||+++    |    ++++++|+|   +++|+.+++..++.     +||.|++ ..|+|+++......... ..
T Consensus        76 ~~~LR~aia~~~~~~~g~~v~~~~I~it~G---a~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~  152 (416)
T PRK09440         76 KDELIEALAALLNERYGWNISPQNIALTNG---SQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVS  152 (416)
T ss_pred             CHHHHHHHHHHHHHHhCCCCChhhEEEccC---hHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceee
Confidence            345666666654    3    357899999   99999999998885     5899999 79999998764421100 00


Q ss_pred             cCeeEEEeCC------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC---
Q 013079          166 CNITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL---  233 (450)
Q Consensus       166 ~g~~v~~v~~------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~---  233 (450)
                      .+..+..++.      .|+++++  + .++++++++++||||||.+.+   +++|+++|+++++++|+|++|..+..   
T Consensus       153 ~~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~  229 (416)
T PRK09440        153 YRPNIELLPEGQFKYHVDFEHLH--I-DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGII  229 (416)
T ss_pred             cccccccccccccccCCCHHHcc--c-CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcc
Confidence            1222222221      2677776  4 567899999999999999977   67888899999999999999953211   


Q ss_pred             --C--ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcH---HH-H
Q 013079          234 --S--PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GL-R  305 (450)
Q Consensus       234 --~--~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l---~~-~  305 (450)
                        +  +...+..++++|+||. +++|+|+ ||+++++++++.+....... ....+.+.+.++..++......   .+ .
T Consensus       230 ~~~~~~~~~~~vI~~~SfSK~-~~pGlRi-G~~i~~~~l~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~  306 (416)
T PRK09440        230 FSEATPLWNPNIILCMSLSKL-GLPGVRC-GIVIADEEIIEALSNMNGII-SLAPGRLGPAIAAEMIESGDLLRLSETVI  306 (416)
T ss_pred             hhhcCccccCCeEEEeccccc-CCCcceE-EEEeCCHHHHHHHHHHHHHh-ccCCCcHHHHHHHHHhccchHHHHHHHHH
Confidence              1  1112467899999996 8899999 99999999998887765521 1233455555555555433322   22 2


Q ss_pred             HHHHHHHHHHHHHHHHhC--C--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccc
Q 013079          306 MKEHCHRALIFARRMKKL--G--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGF  380 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~--~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~  380 (450)
                      .+.++++++.+.+.|+++  +  ..+..|.                   .|.++|+.++. ......|.+.+..   .| 
T Consensus       307 ~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~-------------------gg~fiw~~~~~~~~~~~~~~~~l~~---~g-  363 (416)
T PRK09440        307 RPFYRQKVQLAIALLRRYLPDEPCLIHKPE-------------------GAIFLWLWFKDLPITTEELYQRLKA---RG-  363 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCeEEecCC-------------------CceEEEEECCCCCCCHHHHHHHHHH---CC-
Confidence            334567777777888764  1  2222232                   47789999874 2234567766654   23 


Q ss_pred             cccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHhh
Q 013079          381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       381 i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~~  443 (450)
                      +.+..|+....... ..             .....++||||++ .  ++.++.++.|.+++.++.
T Consensus       364 V~v~pg~~F~~~~~-~~-------------~~~~~~~iRis~~-~~~~~l~~~i~~l~~~~~~~~  413 (416)
T PRK09440        364 VLVVPGHYFFPGLD-ED-------------WPHAHQCIRMNYV-QDDEEIEKGIAILAEEVEKAY  413 (416)
T ss_pred             EEEechHhhCCCCc-cc-------------cCCcCceEEEEec-CCHHHHHHHHHHHHHHHHHHh
Confidence            55555533210000 00             0001368999997 4  344445556666665543

>PLN02721 threonine aldolase

Probab=99.93  E-value=1.6e-23  Score=207.96  Aligned_cols=282  Identities=17%  Similarity=0.209  Sum_probs=192.6

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .|...++++.||++++.+.++++++   |++++.+++.+++. +||+|++++++|.+..... .... ..|.++.+++.+
T Consensus        39 ~~~~~~l~~~la~~~~~~~~~~~~~---Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~-~~g~~~~~v~~~  113 (353)
T PLN02721         39 DPTALRLEEEMAKIFGKEAALFVPS---GTMGNLISVLVHCDVRGSEVILGDNSHIHLYENG-GIST-LGGVHPRTVKNN  113 (353)
T ss_pred             CHHHHHHHHHHHHHhCCceeEEecC---ccHHHHHHHHHHccCCCCeEEEcCccceehhccc-chhh-hcCceeEecCCC
Confidence            5668999999999999988999999   99998888888777 9999999999986554310 0111 268888877643


Q ss_pred             -----CHHHHHHhhhc-------CCceEEEEec-CCCCcccccC---HHHHHHHHHhcCCEEEEeCCC--CCC---CCCc
Q 013079          177 -----DHEMVNSAIVQ-------GRTKVLYFES-ISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF--SPL---VLSP  235 (450)
Q Consensus       177 -----d~~~l~~ai~~-------~~t~lv~i~~-~~NptG~v~~---l~~I~~la~~~gi~livD~~~--~~~---~~~~  235 (450)
                           |++++++++ +       +++++|++++ +|||+|.+.|   +++|.++|+++|+++|+|++|  ...   ..++
T Consensus       114 ~~~~~d~~~l~~~i-~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~  192 (353)
T PLN02721        114 EDGTMDLDAIEAAI-RPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPV  192 (353)
T ss_pred             cCCCcCHHHHHHHH-HhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCH
Confidence                 899999998 5       5899999987 4788999876   789999999999999999986  211   1222


Q ss_pred             c--CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCc--hHHHHHHHHccCCcHHHHHHHHHH
Q 013079          236 A--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM--NPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       236 ~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~--~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                      .  ..++|.++.|+||+++++   +|++++.++++++.+...+.    ..+..+  ....+......++...+++++..+
T Consensus       193 ~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  265 (353)
T PLN02721        193 HRLVKAADSVSVCLSKGLGAP---VGSVIVGSKSFIRKAKRLRK----TLGGGMRQVGVLAAAALVALQENVPKLEDDHK  265 (353)
T ss_pred             HHHhhhCCEEEEecccccCCc---eeeEEecCHHHHHhHHHHHH----hcCCCeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  226888899999999865   44557788888887765544    111111  111122222233333344555566


Q ss_pred             HHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccccccc
Q 013079          312 RALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYY  388 (450)
Q Consensus       312 ~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~~  388 (450)
                      +++.+.+.|++++ ..+....                  ..++++++.++..  .....+.+.|...   | +.+..+  
T Consensus       266 ~~~~l~~~L~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~---g-i~v~~~--  321 (353)
T PLN02721        266 KAKLLAEGLNQIKGLRVNVAA------------------VETNIVYFDITDGSRITAEKLCKSLEEH---G-VLLMPG--  321 (353)
T ss_pred             HHHHHHHHHHhCCCcEEecCC------------------ccceEEEEEccCCccccHHHHHHHHHhC---C-cEEecC--
Confidence            7788999998874 3331111                  1245888888642  2356777777642   2 333322  


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          389 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       389 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                               ..+.||++++ ....++.++.+.++|.++
T Consensus       322 -------------------------~~~~lR~~~~-~~~~~~~i~~~~~~l~~~  349 (353)
T PLN02721        322 -------------------------NSSRIRVVTH-HQISDSDVQYTLSCFQQA  349 (353)
T ss_pred             -------------------------CCceEEEEec-CcCCHHHHHHHHHHHHHH
Confidence                                     1368999999 766777777777777654

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.93  E-value=3.2e-23  Score=206.76  Aligned_cols=289  Identities=16%  Similarity=0.168  Sum_probs=193.3

Q ss_pred             CChhHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHH--HHHHHhCCCccCeeE
Q 013079           97 FNPTVLNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTH--ALLTHFFPRACNITT  170 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~--~~~~~~~~~~~g~~v  170 (450)
                      ....++++++.+++++|++    .+++|+|   ||++++.++.++..+||++++..+.+.+..  ..++    + .|+++
T Consensus        33 ~~~~~~~~r~~la~l~~~~~~~~~i~~t~~---~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~----~-~g~~~  104 (363)
T TIGR02326        33 YNIVVEQIRQQLLALATAEEGYTSVLLQGS---GTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAE----Y-LGIPH  104 (363)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEEcCC---CHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHH----H-cCCce
Confidence            3456789999999999975    3789999   999999999999888887666555444332  2222    2 67777


Q ss_pred             EEeCCC-----CHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeE
Q 013079          171 TFVDIS-----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADV  242 (450)
Q Consensus       171 ~~v~~~-----d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di  242 (450)
                      +.++.+     |++++++++.. .++++|++.+++||||.+.|+++|.++|+++|+++++|+++  +....+..++++|+
T Consensus       105 ~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~  184 (363)
T TIGR02326       105 HVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDY  184 (363)
T ss_pred             EEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccE
Confidence            777653     78999998832 35678889999999999999999999999999999999987  44445556678999


Q ss_pred             EEeCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhh-----------------hhhhccCCCchHHHHHHHHccC---Cc
Q 013079          243 VVHSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQ-----------------GALMLLGPTMNPKVAFELSERI---PH  301 (450)
Q Consensus       243 ~~~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~-----------------~~~~~~g~~~~~~~a~~~~~~~---~~  301 (450)
                      ++.|+||++ +++|  + |+++.+++.++.+.....                 +...+..+.....+...++..+   ..
T Consensus       185 ~~~s~~K~l~~p~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~  261 (363)
T TIGR02326       185 LISSANKCIQGVPG--F-GFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGG  261 (363)
T ss_pred             EEecCccccccCCc--c-eEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhC
Confidence            999999987 5556  5 999888877765432100                 0001111222222222222111   12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccc
Q 013079          302 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFG  379 (450)
Q Consensus       302 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g  379 (450)
                      ++.+.+++.++++++.+.|+++++.+..+...                ..+.+++|.++..  .....+.+.|...   |
T Consensus       262 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~L~~~---g  322 (363)
T TIGR02326       262 VAARHQRYQQNQKTLVAGMRALGFEPLLDDEI----------------QSPIITSFYSPEDPDYRFADFYQRLKEQ---G  322 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeccCccc----------------CCceEEEEECCCCCCCCHHHHHHHHHHC---C
Confidence            45566778899999999999887755432210                1233677887742  2345677777642   3


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~  442 (450)
                       +.++.|..                        ...+.||||+ | . ...+.++.+.++|..+
T Consensus       323 -i~v~~g~~------------------------~~~~~iRi~~~~-~-~~~edv~~~l~~l~~~  359 (363)
T TIGR02326       323 -FVIYPGKV------------------------SQVDCFRIGNIG-E-VDAADITRLLTAIGKA  359 (363)
T ss_pred             -EEEECCcC------------------------CCCCEEEEecCC-C-CCHHHHHHHHHHHHHH
Confidence             45554411                        0136799996 6 4 4555666666666554

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.93  E-value=3.2e-23  Score=209.57  Aligned_cols=222  Identities=14%  Similarity=0.119  Sum_probs=155.7

Q ss_pred             ccccCCCChhHHHHHHHHHHHhC--------CCeEE--EecChHHHHHHHHHHHH---HhccCCCEEEEeCCCchhHHHH
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEG--------TEAAY--CTASDKAGMSAISSVLM---QLCSSGGHVVAARTLYGGTHAL  157 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g--------~~~~~--~tsg~~~gt~ai~~al~---~l~~~gd~Vi~~~~~y~~~~~~  157 (450)
                      +.|+.  .....++|+.+|+++.        .++++  .|+|   +++|+.+++.   .++++||+|++++|.|+.+...
T Consensus        66 ~~Y~~--~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G---~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~  140 (404)
T PTZ00376         66 KEYLP--IEGLQSFIEAAQKLLFGEASYALAEKRIATVQALS---GTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNI  140 (404)
T ss_pred             CCCCC--CCCCHHHHHHHHHHhcCCCccccccCeEEEeeccC---cchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH
Confidence            44552  3345678888888642        23455  4889   8888887764   5679999999999999999988


Q ss_pred             HHHhCCCccCeeEEEeCC---C----CHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEe
Q 013079          158 LTHFFPRACNITTTFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVD  225 (450)
Q Consensus       158 ~~~~~~~~~g~~v~~v~~---~----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD  225 (450)
                      ++     ..|.++..++.   +    |++.+++++.+  ++++++++++||||||.+.+   +++|+++|++|++++|+|
T Consensus       141 ~~-----~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D  215 (404)
T PTZ00376        141 FK-----SAGLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFD  215 (404)
T ss_pred             HH-----HcCCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence            75     36777777765   2    78889888832  35678888999999999975   668888999999999999


Q ss_pred             CCCCCCCCCc--------c---CC-CCeEEEeCCCCccccCccceEEEE---EcCHHHHHHHHH----HhhhhhhccCCC
Q 013079          226 NTFSPLVLSP--------A---RL-GADVVVHSISKFISGGADIIAGAV---CGPANLVNSMMD----LHQGALMLLGPT  286 (450)
Q Consensus       226 ~~~~~~~~~~--------~---~~-g~di~~~S~sK~~g~~g~~igG~l---~~~~~~~~~l~~----~~~~~~~~~g~~  286 (450)
                      ++|..+.++.        .   .. ...+++.|+||.++++|+|+ ||+   ++++++++.+..    ..... ....+.
T Consensus       216 e~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRv-G~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~  293 (404)
T PTZ00376        216 MAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERI-GALHIVCANKEEAANVLSQLKLIIRPM-YSSPPI  293 (404)
T ss_pred             hhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccccccc-ceEEEEeCCHHHHHHHHHHHHHHHhhh-cCCCch
Confidence            9997665431        1   11 25799999999999999999 998   578776655432    21111 011233


Q ss_pred             chHHHHHHHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          287 MNPKVAFELSERIP-------HLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       287 ~~~~~a~~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      +.+.++..++....       ++....++++++++.+.+.|++++
T Consensus       294 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  338 (404)
T PTZ00376        294 HGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALG  338 (404)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44444444443321       122334567888899999998864

>PRK08354 putative aminotransferase; Provisional

Probab=99.93  E-value=3.7e-23  Score=201.76  Aligned_cols=159  Identities=18%  Similarity=0.214  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHH
Q 013079          101 VLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM  180 (450)
Q Consensus       101 ~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~  180 (450)
                      ...+++.+|+..+ +++++|+|   +++++.+++.. +.+||+|+++.|+|+.+...++     ..|.++..++ .|++.
T Consensus        42 ~~~l~~~ia~~~~-~~I~vt~G---~~~al~~~~~~-~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~~~-~d~~~  110 (311)
T PRK08354         42 YEWLEEEFSKLFG-EPIVITAG---ITEALYLIGIL-ALRDRKVIIPRHTYGEYERVAR-----FFAARIIKGP-NDPEK  110 (311)
T ss_pred             hHHHHHHHHHHHC-CCEEECCC---HHHHHHHHHHh-hCCCCeEEEeCCCcHHHHHHHH-----HcCCEEeecC-CCHHH
Confidence            4678999999998 57999999   99999988754 4589999999999999988875     3677777764 47889


Q ss_pred             HHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc--cCCCCeEEEeCCCCccccCc
Q 013079          181 VNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP--ARLGADVVVHSISKFISGGA  255 (450)
Q Consensus       181 l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~--~~~g~di~~~S~sK~~g~~g  255 (450)
                      +++++ + +++++++++||||||.+.+   +++|+++|+++|+++|+||+|..+..+.  ......+++.|+||.++.+|
T Consensus       111 l~~~~-~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~G  188 (311)
T PRK08354        111 LEELV-E-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPG  188 (311)
T ss_pred             HHHhh-c-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCcc
Confidence            98887 4 5788999999999999976   6677888889999999999996665432  12357899999999999999


Q ss_pred             cceEEEEEcCHHHHHHHHHHh
Q 013079          256 DIIAGAVCGPANLVNSMMDLH  276 (450)
Q Consensus       256 ~~igG~l~~~~~~~~~l~~~~  276 (450)
                      +|+ ||+++   +.+.+...+
T Consensus       189 lRi-G~~v~---~~~~l~~~~  205 (311)
T PRK08354        189 IRV-GYVKG---FEEAFRSVR  205 (311)
T ss_pred             cee-eeeee---hHHHHHHcC
Confidence            999 99987   445555443

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.93  E-value=2.3e-23  Score=210.12  Aligned_cols=297  Identities=14%  Similarity=0.122  Sum_probs=200.4

Q ss_pred             cCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           94 SRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        94 ~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      +......++++++.+++++|++   .++++++   |+++++.++..++++||+|+++++.|.+...  .....+ .|.++
T Consensus        37 ~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~---gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~--~~~~~~-~g~~v  110 (401)
T PLN02409         37 SPAFPALTKELLEDVKYIFKTKSGTPFIFPTT---GTGAWESALTNTLSPGDKVVSFRIGQFSLLW--IDQMQR-LNFDV  110 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCC---cHHHHHHHHHhcCCCCCEEEEeCCCchhHHH--HHHHHH-cCCce
Confidence            3334567889999999999874   3688999   9999999999889999999999999876642  122223 68888


Q ss_pred             EEeCCC-----CHHHHHHhhhcC----CceEEEEecCCCCcccccCHHHHHHH--HHhcCCEEEEeCCC--CCCCCCccC
Q 013079          171 TFVDIS-----DHEMVNSAIVQG----RTKVLYFESISNPTLAVANIPELSRL--AHDKGVTVVVDNTF--SPLVLSPAR  237 (450)
Q Consensus       171 ~~v~~~-----d~~~l~~ai~~~----~t~lv~i~~~~NptG~v~~l~~I~~l--a~~~gi~livD~~~--~~~~~~~~~  237 (450)
                      +.++.+     |++++++++ ++    ++++|++.++.|+||.+.|+++|.++  |+++|+++++|+++  +...++..+
T Consensus       111 ~~v~~~~~~~~~~~~l~~~l-~~~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~  189 (401)
T PLN02409        111 DVVESPWGQGADLDILKSKL-RQDTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDE  189 (401)
T ss_pred             EEEECCCCCCCCHHHHHHHH-hhCcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCccccccc
Confidence            877653     789999999 53    79999999999999999999999999  99999999999998  445556667


Q ss_pred             CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh--------------hhhccCCCchH---HHHHHHHccC-
Q 013079          238 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG--------------ALMLLGPTMNP---KVAFELSERI-  299 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~--------------~~~~~g~~~~~---~~a~~~~~~~-  299 (450)
                      +++|+++.|.||++++|.. + |+++.+++.++++......              .......+++.   .+...++..+ 
T Consensus       190 ~~~D~~~~s~~K~l~~P~G-~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~  267 (401)
T PLN02409        190 WGVDVALTGSQKALSLPTG-L-GIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIF  267 (401)
T ss_pred             cCccEEEEcCccccCcCCC-c-ceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH
Confidence            7999999999999865432 5 9999998887776432110              00010112222   1111222211 


Q ss_pred             -CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079          300 -PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF  378 (450)
Q Consensus       300 -~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~  378 (450)
                       ..++...+++.++++++.+.|++.+.++..|. +   .           ...+.+++|.++...+...+...+..  .+
T Consensus       268 ~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~-~---~-----------~~s~~v~~~~~p~~~~~~~l~~~l~~--~~  330 (401)
T PLN02409        268 EEGLENVIARHARLGEATRLAVEAWGLKLCTKK-P---E-----------WRSDTVTAVVVPEGIDSAEIVKNAWK--KY  330 (401)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCC-h---h-----------hcccceEEEeCCCCCCHHHHHHHHHH--hC
Confidence             12445566778888999999988877655432 0   0           01334778887633224456555532  23


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      | +.+..|..                       ......+|||.- -++..+.+..+..+|..
T Consensus       331 ~-i~i~~G~~-----------------------~~~~~~~Rig~~-g~~~~~~~~~~~~~~~~  368 (401)
T PLN02409        331 N-LSLGLGLN-----------------------KVAGKVFRIGHL-GNVNELQLLGALAGVEM  368 (401)
T ss_pred             C-EEEEcCCC-----------------------cccCCEEEEcCC-CCCCHHHHHHHHHHHHH
Confidence            3 44444411                       012478999977 55555555555555554

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.93  E-value=1.4e-22  Score=205.18  Aligned_cols=293  Identities=17%  Similarity=0.174  Sum_probs=198.0

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .++...+++++||+++|.+..+++++   |++|+..++..++.  +++.|+.....|.+....+.     ..+.++..++
T Consensus        89 ~~~~~~~l~~~la~~~g~~~~~~~~s---G~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~-----~~~~~~~~~~  160 (407)
T PRK09064         89 TNHYHVELERELADLHGKEAALVFTS---GYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIR-----RSRCEKHIFR  160 (407)
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEECc---HHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHH-----HcCCcEEEEC
Confidence            36788999999999999888888899   99999988887654  66666666556665555443     2455666666


Q ss_pred             CCCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-C-CCCC------ccCC--CCe
Q 013079          175 ISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLS------PARL--GAD  241 (450)
Q Consensus       175 ~~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~-~~~~------~~~~--g~d  241 (450)
                      ..|++++++.+..   +++++|++++++|++|.+.|+++|.++|+++|+++|+||+|+ + +.-.      ...+  ..|
T Consensus       161 ~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~d  240 (407)
T PRK09064        161 HNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRID  240 (407)
T ss_pred             CCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCe
Confidence            6788888887731   568999999999999999999999999999999999999983 3 2211      0111  358


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCc-hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM-NPKVAFELSERIPHLGLRMKEHCHRALIFARRM  320 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L  320 (450)
                      ++++|+||.+|+.|    ||+++++++++.+.....+.....+..+ ...++...+..++......++..++++++.+.|
T Consensus       241 iv~~t~sKa~g~~G----G~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L  316 (407)
T PRK09064        241 IIEGTLAKAFGVMG----GYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAAL  316 (407)
T ss_pred             EEEEecchhhhccC----ceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999764    8999999888877654432211112221 122222222222323334566788889999999


Q ss_pred             HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccC
Q 013079          321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS  400 (450)
Q Consensus       321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~  400 (450)
                      ++.++.+..+                    .++++.+.+++...+..+.+.|..  ..| +.+...      ..|..   
T Consensus       317 ~~~g~~~~~~--------------------~~~iv~i~~~~~~~~~~l~~~L~~--~~g-i~v~~~------~~p~~---  364 (407)
T PRK09064        317 DAAGIPVMPN--------------------ESHIVPVMVGDPEKCKKASDMLLE--EHG-IYVQPI------NYPTV---  364 (407)
T ss_pred             HHcCCCCCCC--------------------CCCEEEEEeCCHHHHHHHHHHHHH--hCC-EEEeeE------CCCCC---
Confidence            8876543211                    245788888754446667776642  123 333321      01110   


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       401 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                                 ....+.||||++ ...++++++.+.++|+++.+.
T Consensus       365 -----------~~~~~~lRis~~-~~~t~edi~~l~~~l~~~~~~  397 (407)
T PRK09064        365 -----------PRGTERLRITPT-PFHTDEMIDHLVEALVEVWAR  397 (407)
T ss_pred             -----------CCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHH
Confidence                       001357999999 888888888888888776543

>PLN02368 alanine transaminase

Probab=99.93  E-value=2.1e-23  Score=209.70  Aligned_cols=217  Identities=12%  Similarity=0.088  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          102 LNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       102 ~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..||+.||+++    |    .+++++|+|   +++++..++.+++ .+||.|+++.|.|+.+...+.     ..|.++..
T Consensus       110 ~~LR~aia~~~~~~~g~~~~~~~I~it~G---a~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~-----~~g~~~v~  181 (407)
T PLN02368        110 PGVRKEVAEFIERRDGYPSDPELIFLTDG---ASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATIS-----LLGGTLVP  181 (407)
T ss_pred             HHHHHHHHHHHHHhcCCCCChhhEEEccc---HHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHH-----HcCCEEEE
Confidence            45666666654    4    357899999   9999999999887 699999999999999988875     35667766


Q ss_pred             eCC-------CCHHHHHHhhhcC------CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013079          173 VDI-------SDHEMVNSAIVQG------RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-  235 (450)
Q Consensus       173 v~~-------~d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-  235 (450)
                      ++.       .|+++|++++ ++      +++++++++||||||.+.+   +++|+++|+++|++||+||+|..+.++. 
T Consensus       182 v~~~~~~~~~~d~~~le~~i-~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~  260 (407)
T PLN02368        182 YYLEESENWGLDVNNLRQSV-AQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDE  260 (407)
T ss_pred             EecccccCCCCCHHHHHHHH-HHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            653       2789999988 43      6899999999999999976   6688889999999999999996654321 


Q ss_pred             --c--------C-------CCCeEEEeCCCCcc-ccCccceEEEEE---cCHHHHHHHHHHhhhhhhccCCCchHHHHHH
Q 013079          236 --A--------R-------LGADVVVHSISKFI-SGGADIIAGAVC---GPANLVNSMMDLHQGALMLLGPTMNPKVAFE  294 (450)
Q Consensus       236 --~--------~-------~g~di~~~S~sK~~-g~~g~~igG~l~---~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~  294 (450)
                        .        .       .+..+++.|+||.| +++|+|+ ||++   .++++++.+..... . ....+++.+.++..
T Consensus       261 ~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRi-Gy~i~~~~~~~li~~~~~~~~-~-~~~~~~~~Q~aa~~  337 (407)
T PLN02368        261 RPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVEEIYKVAS-I-ALSPNVSGQIFMGL  337 (407)
T ss_pred             CCcccHHHHHhhhcccccccceEEEEecCCcccccCCccce-EEEEEeCCCHHHHHHHHHHhc-c-cCCCCcHHHHHHHH
Confidence              0        1       12568999999998 8999999 9998   58888888877532 1 23345566666665


Q ss_pred             HHccCC----c----H---HHHHHHHHHHHHHHHHHHHhCC-CeeeCC
Q 013079          295 LSERIP----H----L---GLRMKEHCHRALIFARRMKKLG-LKVLYP  330 (450)
Q Consensus       295 ~~~~~~----~----l---~~~~~~~~~~~~~l~~~L~~~~-~~v~~p  330 (450)
                      ++...+    .    .   ....+.++++++.+.+.|++++ ..+..|
T Consensus       338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P  385 (407)
T PLN02368        338 MVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFT  385 (407)
T ss_pred             HhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCC
Confidence            554321    1    2   2235667889999999999874 344444

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.92  E-value=5.4e-23  Score=205.50  Aligned_cols=291  Identities=14%  Similarity=0.157  Sum_probs=196.4

Q ss_pred             hhHHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           99 PTVLNLSRQMAALEGTEA----AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~----~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ...+++++.+++++|+++    +++|+|   |+++++.++.++..+||+|++..+.|.+...  .....+ .|+++..++
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~---gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~--~~~~~~-~g~~~~~i~  110 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGS---GTFSVEAAIGSLVPRDGKVLVPDNGAYGARI--AQIAEY-LGIAHVVLD  110 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCC---cHHHHHHHHHhccCCCCeEEEEeCCchHHHH--HHHHHH-cCCcEEEEE
Confidence            478999999999999742    578999   9999999999999999999988877765531  111122 677887776


Q ss_pred             CC-----CHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeC
Q 013079          175 IS-----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHS  246 (450)
Q Consensus       175 ~~-----d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S  246 (450)
                      .+     |++++++++.. +++++|++.+++||||.+.|+++|.++|+++|+++|+|+++  +....+....++|+++.|
T Consensus       111 ~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s  190 (368)
T PRK13479        111 TGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISS  190 (368)
T ss_pred             CCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEec
Confidence            53     78999998832 35678999999999999999999999999999999999876  333445555689999999


Q ss_pred             CCCcc-ccCccceEEEEEcCHHHHHHHHHHhhh----------------hhhccCCCchHHHHHHHHc---cCCcHHHHH
Q 013079          247 ISKFI-SGGADIIAGAVCGPANLVNSMMDLHQG----------------ALMLLGPTMNPKVAFELSE---RIPHLGLRM  306 (450)
Q Consensus       247 ~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~----------------~~~~~g~~~~~~~a~~~~~---~~~~l~~~~  306 (450)
                      ++|++ |++|  + |+++.++++++.+......                ....+.+.........++.   ....+.++.
T Consensus       191 ~~K~l~g~~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~  267 (368)
T PRK13479        191 ANKCIEGVPG--F-GFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARG  267 (368)
T ss_pred             CccccccCCC--c-eEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Confidence            99976 5667  5 9999998887776432110                0001111111111112221   122355666


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccc
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVS  384 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs  384 (450)
                      +++.++++++.+.|+++++++..+...                ..+.+++|.++..  .+..++.+.|...+    +.++
T Consensus       268 ~~~~~~~~~l~~~L~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----i~v~  327 (368)
T PRK13479        268 ARYANNQRTLVAGMRALGFEPLLDAEI----------------QSPIIVTFHAPADPAYDFKEFYERLKEQG----FVIY  327 (368)
T ss_pred             HHHHHHHHHHHHHHHHcCCcccCCchh----------------cCceEEEEECCCCCCcCHHHHHHHHHHCC----EEEe
Confidence            788899999999999987754433210                1223677776632  13456777776532    4544


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHhhh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      .|..                        ...+.+|+|. |  .++.+.++.+.++|+++.+
T Consensus       328 ~g~~------------------------~~~~~iRis~~~--~~t~edi~~~l~~L~~~l~  362 (368)
T PRK13479        328 PGKL------------------------TQVDTFRIGCIG--DVDAADIRRLVAAIAEALY  362 (368)
T ss_pred             cCCC------------------------CCCCEEEEecCC--CCCHHHHHHHHHHHHHHHH
Confidence            3311                        0135799996 6  3456666777777766543

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.92  E-value=1.7e-23  Score=214.07  Aligned_cols=144  Identities=12%  Similarity=0.248  Sum_probs=117.0

Q ss_pred             eEEEecChHHHHHHHHHHHHH-----hccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-------CCHHHHHH
Q 013079          116 AAYCTASDKAGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVNS  183 (450)
Q Consensus       116 ~~~~tsg~~~gt~ai~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-------~d~~~l~~  183 (450)
                      ++++|+|   +++|+..++.+     ++.+||+|+++.|.|+.+...+. +. . .+..+..++.       .|++++++
T Consensus       163 ~I~vT~G---a~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~-l~-g-~~~~~v~v~~~~~~~f~~d~~~l~~  236 (527)
T PRK09275        163 DLFAVEG---GTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPE-LP-R-YDLEVVHINADEENEWQYPDSELEK  236 (527)
T ss_pred             eEEEeCC---HHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHH-Hc-C-CCeEEEEeecCcccCCCCCHHHHHh
Confidence            6899999   99999998886     68999999999999999987753 21 1 3555555542       26789999


Q ss_pred             hhhcCCceEEEEecCCCCcccccC---HHHHHHHHHh--cCCEEEEeCCCCCCCCCccC-----CCCeEEEeCCCCcccc
Q 013079          184 AIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHD--KGVTVVVDNTFSPLVLSPAR-----LGADVVVHSISKFISG  253 (450)
Q Consensus       184 ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~--~gi~livD~~~~~~~~~~~~-----~g~di~~~S~sK~~g~  253 (450)
                      ++ ++++++|++++||||||.+.+   +++|+++|++  ++++||+|++|..+......     ....+++.|+||.+++
T Consensus       237 ~~-~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~m  315 (527)
T PRK09275        237 LR-DPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGA  315 (527)
T ss_pred             hc-CCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccC
Confidence            88 889999999999999999987   7788888964  59999999999655432111     1468999999999999


Q ss_pred             CccceEEEEEcCHH
Q 013079          254 GADIIAGAVCGPAN  267 (450)
Q Consensus       254 ~g~~igG~l~~~~~  267 (450)
                      +|+|+ ||++++++
T Consensus       316 tG~Rl-G~i~~~~~  328 (527)
T PRK09275        316 TGWRL-GVIALHED  328 (527)
T ss_pred             cHhHH-hhhhcCch
Confidence            99999 99998865

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.92  E-value=4.7e-23  Score=203.37  Aligned_cols=285  Identities=19%  Similarity=0.122  Sum_probs=192.0

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-  175 (450)
                      ..+..+++++.+++++|.+.+++++|   |++++.+++.+++++||+|+++.+.|.++..... .. +..|.++..++. 
T Consensus        30 ~~~~~~~l~~~~a~~~g~~~~~~~~~---gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~-~~-~~~g~~~~~v~~~  104 (338)
T cd06502          30 EDPTTAKLEARAAELFGKEAALFVPS---GTAANQLALAAHTQPGGSVICHETAHIYTDEAGA-PE-FLSGVKLLPVPGE  104 (338)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEecC---chHHHHHHHHHhcCCCCeEEEecCcceeeecCCc-HH-HHcCceEEeecCC
Confidence            45778999999999999778899999   9999999999999999999999999876543210 00 125778877765 


Q ss_pred             ---CCHHHHHHhhhcC-------CceEEEEecCCCCccc--ccCHHHHHHHHHhcCCEEEEeCCCCC-----CCCC--cc
Q 013079          176 ---SDHEMVNSAIVQG-------RTKVLYFESISNPTLA--VANIPELSRLAHDKGVTVVVDNTFSP-----LVLS--PA  236 (450)
Q Consensus       176 ---~d~~~l~~ai~~~-------~t~lv~i~~~~NptG~--v~~l~~I~~la~~~gi~livD~~~~~-----~~~~--~~  236 (450)
                         .|++++++++ ++       ++++|++++|+||+|.  ..++++|+++|+++|+++|+|++|..     ....  ..
T Consensus       105 ~~~~d~~~l~~~i-~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~  183 (338)
T cd06502         105 NGKLTPEDLEAAI-RPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTY  183 (338)
T ss_pred             CCcCCHHHHHHHh-hccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHH
Confidence               3889999998 43       7899999999998443  24678899999999999999998621     1111  11


Q ss_pred             CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC--cHHHHHHHHHHHHH
Q 013079          237 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP--HLGLRMKEHCHRAL  314 (450)
Q Consensus       237 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~--~l~~~~~~~~~~~~  314 (450)
                      ..++|+++.|+||+++++|   |++++.++++++.+.......  ..+...+...+..+...++  ....+.++..++++
T Consensus       184 ~~~~d~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~  258 (338)
T cd06502         184 KSGVDSVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQA--GGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMAR  258 (338)
T ss_pred             HhcCCEEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHh--CCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            2368899999999999876   456678888888887654311  0111122222222222222  24455677778889


Q ss_pred             HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccccccccccc
Q 013079          315 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS  393 (450)
Q Consensus       315 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~  393 (450)
                      ++.+.|++++..+ +|.                   .++++.+.++ .......+.+.+......|+ .+.         
T Consensus       259 ~l~~~L~~~~~~~-~~~-------------------~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi-~~~---------  308 (338)
T cd06502         259 RLAEALEELGGLE-SEV-------------------QTNIVLLDPVEANAVFVELSKEAIERRGEGV-LFY---------  308 (338)
T ss_pred             HHHHHHHhcCCCc-ccc-------------------cCCeEEEecCCccHHHHHHHHHHHHhhhCCE-EEE---------
Confidence            9999999877632 221                   3457777775 32333444444321000121 111         


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          394 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                       +               .  ..+.|||+++ ...++++++.+.+++++
T Consensus       309 -~---------------~--~~~~lRi~~~-~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         309 -A---------------W--GEGGVRFVTH-WDTTEEDVDELLSALKA  337 (338)
T ss_pred             -e---------------c--CCCeEEEEee-cCCCHHHHHHHHHHHhc
Confidence             0               0  1267999999 88788888888887754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.92  E-value=2.5e-22  Score=198.54  Aligned_cols=288  Identities=23%  Similarity=0.247  Sum_probs=198.4

Q ss_pred             CCChhHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccC
Q 013079           96 HFNPTVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      ...+...++++.++++++        .+.+++++|   +++++..++.++.++||+|+++++.|+++...++     ..|
T Consensus        33 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~---~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~-----~~~  104 (350)
T cd00609          33 YPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNG---AQEALSLLLRALLNPGDEVLVPDPTYPGYEAAAR-----LAG  104 (350)
T ss_pred             CCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecC---cHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCC
Confidence            344556667777777765        346899999   9999999999998999999999999999988875     256


Q ss_pred             eeEEEeCCC-----CH--HHHHHhhhcCCceEEEEecCCCCcccccCHHH---HHHHHHhcCCEEEEeCCCCCCCC----
Q 013079          168 ITTTFVDIS-----DH--EMVNSAIVQGRTKVLYFESISNPTLAVANIPE---LSRLAHDKGVTVVVDNTFSPLVL----  233 (450)
Q Consensus       168 ~~v~~v~~~-----d~--~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~---I~~la~~~gi~livD~~~~~~~~----  233 (450)
                      .++.+++.+     +.  +.++..+ .+++++|++++++||||.+.|+++   |.++|+++|+++|+|++|+.+..    
T Consensus       105 ~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~  183 (350)
T cd00609         105 AEVVPVPLDEEGGFLLDLELLEAAK-TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEP  183 (350)
T ss_pred             CEEEEEecccccCCccCHHHHHhhc-CccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcc
Confidence            777777654     22  4555555 788999999999999999988554   45899999999999999844321    


Q ss_pred             -----CccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHH
Q 013079          234 -----SPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRM  306 (450)
Q Consensus       234 -----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~  306 (450)
                           .....+.|+++.|+||+++.+|.++ |+++.++ ++.+.+...... .....+...+.++..++... +.+....
T Consensus       184 ~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~-G~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (350)
T cd00609         184 PPALALLDAYERVIVLRSFSKTFGLPGLRI-GYLIAPPEELLERLKKLLPY-TTSGPSTLSQAAAAAALDDGEEHLEELR  261 (350)
T ss_pred             cccccCcCccCcEEEEeecccccCCcccce-EEEecCHHHHHHHHHHHHHh-cccCCChHHHHHHHHHHhCcHHHHHHHH
Confidence                 1223468999999999999777776 9998888 788887665441 11223333333333343333 3445555


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      +++.++++++.+.|++++.....+.                  ..|.++++.++.......+.+.+..   .| +.+..+
T Consensus       262 ~~~~~~~~~l~~~L~~~~~~~~~~~------------------~~g~~~~~~~~~~~~~~~~~~~l~~---~g-i~i~~~  319 (350)
T cd00609         262 ERYRRRRDALLEALKELGPLVVVKP------------------SGGFFLWLDLPEGDDEEFLERLLLE---AG-VVVRPG  319 (350)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccCC------------------CccEEEEEecCCCChHHHHHHHHHh---CC-EEEecc
Confidence            6678889999999988765321111                  2466888888754334445555553   23 444433


Q ss_pred             cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      .....                     .....|||+++ ..  .+.++.+.++|+
T Consensus       320 ~~~~~---------------------~~~~~iRi~~~-~~--~~~i~~~~~al~  349 (350)
T cd00609         320 SAFGE---------------------GGEGFVRLSFA-TP--EEELEEALERLA  349 (350)
T ss_pred             ccccc---------------------CCCCeEEEEee-CC--HHHHHHHHHHhh
Confidence            22110                     12578999999 66  666777766664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR01814 kynureninase kynureninase

Probab=99.92  E-value=1.9e-23  Score=211.38  Aligned_cols=318  Identities=13%  Similarity=0.087  Sum_probs=199.4

Q ss_pred             ccCccccCCH-HHHHHhhcCCCCCCC-CCccccCCC-ChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc
Q 013079           64 ASATFTVMEP-ETMRRMFAGELGPDR-DFFIYSRHF-NPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC  138 (450)
Q Consensus        64 ~att~~~~~~-~~~~~~~~~~~~n~~-~~~~y~r~~-~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~  138 (450)
                      +|+++..+.+ +++.+++. .++++. ..|..++.. ....+.++ ++ +++|++  +++||+|   +|+++++++.+++
T Consensus        34 ~a~g~~p~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~g~~~~~v~~~~~---~t~~l~~~~~~~~  107 (406)
T TIGR01814        34 NSLGLMPKAARNALKEELD-KWAKIAIRGHNTGKAPWFTLDESLL-KL-RLVGAKEDEVVVMNT---LTINLHLLLASFY  107 (406)
T ss_pred             CCcCcCcHHHHHHHHHHHH-HHHHhhhccCccCCCChhhhhhhhc-cc-cccCCCCCcEEEeCC---chHHHHHHHHHhc
Confidence            4455542333 55555443 344433 345443333 22333443 45 788864  6899999   9999999999876


Q ss_pred             cCC---CEEEEeCCCchhHHHHHHHhCCCccCeeE----EEeCCC-----CHHHHHHhhh--cCCceEEEEecCCCCccc
Q 013079          139 SSG---GHVVAARTLYGGTHALLTHFFPRACNITT----TFVDIS-----DHEMVNSAIV--QGRTKVLYFESISNPTLA  204 (450)
Q Consensus       139 ~~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v----~~v~~~-----d~~~l~~ai~--~~~t~lv~i~~~~NptG~  204 (450)
                      +++   +.|+++..+|++....+.....+ .|+++    ..++.+     |++++++++.  .++|++|++++++|.||.
T Consensus       108 ~~~~~~~~i~~~~~~~~s~~~~~~~~~~~-~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~  186 (406)
T TIGR01814       108 KPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQ  186 (406)
T ss_pred             CCcCCccEEEecCCCCChHHHHHHHHHHh-cCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccce
Confidence            654   26888889999877665433333 57665    344432     7788887762  368999999999999999


Q ss_pred             ccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccc-cCccceEEEEEcCHHHHHHHHHHhhhh--
Q 013079          205 VANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA--  279 (450)
Q Consensus       205 v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~--  279 (450)
                      ++|+++|+++|+++|+++++|++|  +.+.++..++++|+++.|.||+++ ++|   +|+++.++.. ..+.....++  
T Consensus       187 ~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG---~~l~v~~~~~-~~~~p~~~g~~~  262 (406)
T TIGR01814       187 LFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG---AGAFVHEKHA-HTERPRLAGWWG  262 (406)
T ss_pred             ecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC---eEEEEehhhh-hhcCCCCCcccC
Confidence            999999999999999999999998  556677777899999999999874 555   3544444332 1221110000  


Q ss_pred             ------------------hhccCCCchHHHHHH---HHccC--CcHHHHHHHHHHHHHHHHHHHHhC-C----CeeeCCC
Q 013079          280 ------------------LMLLGPTMNPKVAFE---LSERI--PHLGLRMKEHCHRALIFARRMKKL-G----LKVLYPG  331 (450)
Q Consensus       280 ------------------~~~~g~~~~~~~a~~---~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~-~----~~v~~p~  331 (450)
                                        ....| +++....+.   ++..+  ..+....++...+.+++.+.|++. +    .++..|.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~G-T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~  341 (406)
T TIGR01814       263 HARPTRFKMDNTLGLIPCGFRIS-NPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPR  341 (406)
T ss_pred             CCCccccccccccCCCccceeeC-CccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCC
Confidence                              00112 222222111   22111  123444556677788888888764 2    3444432


Q ss_pred             CCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhc
Q 013079          332 LEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA  411 (450)
Q Consensus       332 ~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~  411 (450)
                         .+.            ..+++++|.++ . ....+...|...   | +.++.                          
T Consensus       342 ---~~~------------~r~~~v~~~~~-~-~~~~~~~~L~~~---g-i~v~~--------------------------  374 (406)
T TIGR01814       342 ---DHA------------QRGCQLSLTHP-V-PGKAVFQALIKR---G-VIGDK--------------------------  374 (406)
T ss_pred             ---Chh------------hcCCeEEEEec-C-CHHHHHHHHHHC---C-EEEec--------------------------
Confidence               111            24668899887 2 245566666542   2 33211                          


Q ss_pred             CCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013079          412 GISAGLVRMSV-GYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       412 g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~  442 (450)
                       ...+.||||+ + ..+++++++.+.++|+++
T Consensus       375 -~~~~~iRiS~~~-~~nt~~did~l~~~l~~~  404 (406)
T TIGR01814       375 -REPSVIRVAPVP-LYNTFVDVYDAVNVLEEI  404 (406)
T ss_pred             -cCCCeEEEechh-ccCCHHHHHHHHHHHHHH
Confidence             0136899999 6 688899999999988765

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK08637 hypothetical protein; Provisional

Probab=99.92  E-value=1.4e-22  Score=203.74  Aligned_cols=255  Identities=14%  Similarity=0.097  Sum_probs=166.3

Q ss_pred             CCccccCCCChhHHHHHHHHHHHhC-------C---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHH
Q 013079           89 DFFIYSRHFNPTVLNLSRQMAALEG-------T---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALL  158 (450)
Q Consensus        89 ~~~~y~r~~~~~~~~l~~~iA~l~g-------~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~  158 (450)
                      ..+.|+.  ......||+.+++.+.       .   +++++|+|   +++++.+++..++++||+|++++|.|+.+...+
T Consensus        36 ~~~~Y~~--~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G---~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~  110 (388)
T PRK08637         36 EIFPYAP--PQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNA---LTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTF  110 (388)
T ss_pred             cccCCCC--CCCCHHHHHHHHHHHhccCccccccccceeeEccc---hHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHH
Confidence            3455653  2335667777776541       1   35699999   999999999999999999999999999988764


Q ss_pred             HHhCCCccCeeEEEeCC--C----CHHHHHHhhh---cCCceEEEEecCCCCcccccC---HHHHHHHHHh-----cCCE
Q 013079          159 THFFPRACNITTTFVDI--S----DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN---IPELSRLAHD-----KGVT  221 (450)
Q Consensus       159 ~~~~~~~~g~~v~~v~~--~----d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~-----~gi~  221 (450)
                      ..    ..|.++..++.  +    |++++++++.   .+.++++++++||||||.+.+   +++|+++|++     ++++
T Consensus       111 ~~----~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~  186 (388)
T PRK08637        111 NT----RRGAEIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVV  186 (388)
T ss_pred             HH----hcCCEEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence            31    14777777664  2    7899988873   145567778899999999976   6677777764     8999


Q ss_pred             EEEeCCCCCCCCCc-------cC---C-CCe--EEEeCCCCccccCccceEEEEEc------CHHHHHHHHHHhhh---h
Q 013079          222 VVVDNTFSPLVLSP-------AR---L-GAD--VVVHSISKFISGGADIIAGAVCG------PANLVNSMMDLHQG---A  279 (450)
Q Consensus       222 livD~~~~~~~~~~-------~~---~-g~d--i~~~S~sK~~g~~g~~igG~l~~------~~~~~~~l~~~~~~---~  279 (450)
                      +|+|++|..+.++.       ..   . +..  +.+.|+||.++.+|+|+ ||++.      ++++.+.+......   .
T Consensus       187 iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRl-G~~~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (388)
T PRK08637        187 AVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRV-GFITFGTKAGSSQTVKEALEKKVKGLIRS  265 (388)
T ss_pred             EEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccce-EEEEEccccCCcHHHHHHHHHHHHHHhhc
Confidence            99999996654321       11   1 222  34469999999999999 99874      35777766532110   0


Q ss_pred             hhccCCCchHHHHHHHHccCCc---HHHHHHHHHHHHHHHHHHHHhCCC----eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          280 LMLLGPTMNPKVAFELSERIPH---LGLRMKEHCHRALIFARRMKKLGL----KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       280 ~~~~g~~~~~~~a~~~~~~~~~---l~~~~~~~~~~~~~l~~~L~~~~~----~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      .....+.+.+.++..++.....   +.+....++++++.+.+.|++++.    .+..|                   ..|
T Consensus       266 ~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~-------------------~~g  326 (388)
T PRK08637        266 NISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPF-------------------NSG  326 (388)
T ss_pred             ccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-------------------cce
Confidence            1123345555555444433222   122233456666677777866531    22111                   246


Q ss_pred             cEEEEEeCCHHHHHHHHHHhh
Q 013079          353 GLLCLDMETEEKANRLMNYLQ  373 (450)
Q Consensus       353 ~~~~~~l~~~~~~~~~~~~l~  373 (450)
                      .++|+.+++. ...+|.+.+.
T Consensus       327 ~~~~~~l~~~-~~~~l~~~l~  346 (388)
T PRK08637        327 YFMCLKLKGV-DAEELRVHLL  346 (388)
T ss_pred             EEEEecCChH-HHHHHHHHHh
Confidence            6888888743 3567777763

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.92  E-value=3.6e-23  Score=208.69  Aligned_cols=215  Identities=15%  Similarity=0.109  Sum_probs=150.3

Q ss_pred             hHHHHHHHHHHHhC--------CCeE--EEecChHHHHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhCCCccC
Q 013079          100 TVLNLSRQMAALEG--------TEAA--YCTASDKAGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------~~~~--~~tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      ...++|+.+|+++.        .+++  ++|+|   +++|+.++++.+  +.+||.|++++|.|+.+...+.     ..|
T Consensus        70 G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~G---a~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~-----~~g  141 (396)
T PRK09257         70 GLAAYRQAVQELLFGADSPALAAGRVATVQTPG---GTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFE-----AAG  141 (396)
T ss_pred             CCHHHHHHHHHHhcCCCCcccccCeEEEEecCC---ccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHH-----HcC
Confidence            34567777777642        3445  89999   999999998665  4799999999999999998886     357


Q ss_pred             eeEEEeCC-------CCHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079          168 ITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       168 ~~v~~v~~-------~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~  235 (450)
                      .+++.++.       .|++++++++..  .+++++++++||||||.+.+   +++|+++|+++++++|+|++|..+.++.
T Consensus       142 ~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~  221 (396)
T PRK09257        142 LEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGL  221 (396)
T ss_pred             CcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccch
Confidence            77776653       178899888732  34567777999999999975   6788999999999999999996665321


Q ss_pred             ----------cCC-CCeEEEeCCCCccccCccceEEEEE--c-CHHHHH----HHHHHhhhhhhccCCCchHHHHHHHHc
Q 013079          236 ----------ARL-GADVVVHSISKFISGGADIIAGAVC--G-PANLVN----SMMDLHQGALMLLGPTMNPKVAFELSE  297 (450)
Q Consensus       236 ----------~~~-g~di~~~S~sK~~g~~g~~igG~l~--~-~~~~~~----~l~~~~~~~~~~~g~~~~~~~a~~~~~  297 (450)
                                ... ...++++|+||.++++|+|+ ||++  . +++.+.    .+..... ......+.+.+..+...+.
T Consensus       222 ~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRi-G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~  299 (396)
T PRK09257        222 EEDAYGLRAFAAAGLELLVASSFSKNFGLYGERV-GALSVVAEDAEEADRVLSQLKATIR-TNYSNPPAHGAAIVATILN  299 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEEcCCcCccccccc-eeEEEEeCCHHHHHHHHHHHHHHhh-hhcCCCcHHHHHHHHHHhC
Confidence                      111 35789999999999999999 9986  2 444333    3322221 1011123333334433333


Q ss_pred             cC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          298 RI-------PHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       298 ~~-------~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      ..       +++....+++.++++.+.+.|++++
T Consensus       300 ~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~  333 (396)
T PRK09257        300 DPELRAEWEAELEEMRERIKAMRQLLVEALKAKG  333 (396)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            21       2233455667888999999998864

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.92  E-value=8.2e-23  Score=204.50  Aligned_cols=309  Identities=12%  Similarity=0.134  Sum_probs=206.5

Q ss_pred             CccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc----
Q 013079           66 ATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC----  138 (450)
Q Consensus        66 tt~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~----  138 (450)
                      .+.+.+. .+.+..+++..++++. .  |. ......+++++.||+++|++  .+++++|   |++++..++.++.    
T Consensus        29 ~~~~~~~~~~a~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~la~~~g~~~~~~~~~~g---~~~~~~~~~~~~~~~~~  101 (373)
T TIGR03812        29 CTNPHPIAVKAYDMFIETNLGDPG-L--FP-GTKKIEEEVVGSLGNLLHLPDAYGYIVSG---GTEANIQAVRAAKNLAR  101 (373)
T ss_pred             eCCchHHHHHHHHHHhhcCCCCcc-c--Cc-cHHHHHHHHHHHHHHHhCCCCCCeEEecc---HHHHHHHHHHHHHHHHh
Confidence            3334444 4666666665566653 1  22 23455689999999999975  4688999   9999988876653    


Q ss_pred             --cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHH
Q 013079          139 --SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL  211 (450)
Q Consensus       139 --~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I  211 (450)
                        .+||+|++++++|.++...++     ..|+++..++.+     |++++++++ ++++..+++.+++||||.+.|+++|
T Consensus       102 ~~~~g~~vl~~~~~h~~~~~~~~-----~~G~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~vv~~~~~~~tG~~~~~~~i  175 (373)
T TIGR03812       102 EEKRTPNIIVPESAHFSFEKAAE-----MLGLELRYAPLDEDYTVDVKDVEDLI-DDNTIGIVGIAGTTELGQIDDIEEL  175 (373)
T ss_pred             ccCCCcEEEECCcchHHHHHHHH-----HcCCeEEEEeeCCCCCcCHHHHHHHH-hhCcEEEEEECCCCCCCccCCHHHH
Confidence              367899999999998776664     368888887753     899999998 6677544444579999999999999


Q ss_pred             HHHHHhcCCEEEEeCCCCCCC------------CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh
Q 013079          212 SRLAHDKGVTVVVDNTFSPLV------------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA  279 (450)
Q Consensus       212 ~~la~~~gi~livD~~~~~~~------------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~  279 (450)
                      .++|+++|+++|+|++|+.+.            .+....++|.++.|.||+.. .+.+.||+++.++++++.+..... +
T Consensus       176 ~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~-~~~~~G~~~~~~~~~~~~l~~~~~-~  253 (373)
T TIGR03812       176 SKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGL-SPIPAGGILFRSKSYLKYLSVDAP-Y  253 (373)
T ss_pred             HHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCC-CcCCceEEEEeCHHHHhhhcccCc-c
Confidence            999999999999999984321            11112378999999999543 334455666778877776632111 1


Q ss_pred             hhc------cCCC--chHHHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCC
Q 013079          280 LML------LGPT--MNPKVAFELSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY  349 (450)
Q Consensus       280 ~~~------~g~~--~~~~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~  349 (450)
                      ...      .|..  .....+..++..+  +.++...++..++++++.+.|++++.....+.                  
T Consensus       254 ~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------  315 (373)
T TIGR03812       254 LTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIEP------------------  315 (373)
T ss_pred             cCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCC------------------
Confidence            000      0111  1122222233222  23455667788999999999998876433321                  


Q ss_pred             CcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013079          350 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD  429 (450)
Q Consensus       350 g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~  429 (450)
                       ..+++.|.+++.   ..+.+.|...   | +.++.+.                          .+..||||++ ..+++
T Consensus       316 -~~~~v~~~~~~~---~~v~~~L~~~---g-i~v~~~~--------------------------~~~~iRis~~-~~~t~  360 (373)
T TIGR03812       316 -VLNIVAFEVDDP---EEVRKKLRDR---G-WYVSVTR--------------------------CPKALRIVVM-PHVTR  360 (373)
T ss_pred             -CceEEEEEeCCH---HHHHHHHHHC---C-ceeccCC--------------------------CCCEEEEEEE-CCCCH
Confidence             234788888753   3566666542   2 3333210                          1468999999 88889


Q ss_pred             HHHHHHHHHHHHh
Q 013079          430 QRWSQFEKALSRM  442 (450)
Q Consensus       430 ~~i~~l~~al~~~  442 (450)
                      +.++.+.++|+++
T Consensus       361 edid~l~~~L~~~  373 (373)
T TIGR03812       361 EHIEEFLEDLKEI  373 (373)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999988753

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.92  E-value=5.4e-23  Score=204.47  Aligned_cols=296  Identities=15%  Similarity=0.127  Sum_probs=191.9

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCC---------------EEEEeCCCchhHHHHHHHh
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGG---------------HVVAARTLYGGTHALLTHF  161 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd---------------~Vi~~~~~y~~~~~~~~~~  161 (450)
                      ..+.++++++.+|+++|++.+++|+|   +|+|+++++.+++++||               +||++.|.|..+...+...
T Consensus        43 ~~~~~~~~~~~~a~~~g~~~~~~~~g---~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~  119 (363)
T TIGR01437        43 IKELVNKTGEYIANLLGVEDAVIVSS---ASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETM  119 (363)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEcC---HHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHH
Confidence            45778999999999999999999999   99999999999999888               8898886665442111111


Q ss_pred             CCCccCeeEEEeCCC---CHHHHHHhhhcCCceEEE-EecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccC
Q 013079          162 FPRACNITTTFVDIS---DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPAR  237 (450)
Q Consensus       162 ~~~~~g~~v~~v~~~---d~~~l~~ai~~~~t~lv~-i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~  237 (450)
                      .. ..|.++++++.+   |++++++++ +++|++++ +++++||+|.+.|+++|+++|+++|+++|+|++|+........
T Consensus       120 ~~-~~g~~~v~v~~~~~~d~~~le~ai-~~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~~~~~  197 (363)
T TIGR01437       120 VR-LGGGKVVEAGYANECSAEQLEAAI-TEKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQKYYR  197 (363)
T ss_pred             HH-hcCCeEEEEcCCCCCCHHHHHHhc-ChhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchHHHHH
Confidence            11 368788887653   899999999 88999665 6788999999999999999999999999999999521122345


Q ss_pred             CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhcc-CCCchHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Q 013079          238 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL-GPTMNPKVAFELSER-IPHLGLRMKEHCHRALI  315 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~-g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~  315 (450)
                      +|+|++++|+||+++++  + +|+++.++++++.+.....+..... ...........++.. .+...+..+++.++++.
T Consensus       198 ~g~D~~~~S~~K~l~gp--~-~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~  274 (363)
T TIGR01437       198 LGADLVIYSGAKAIEGP--T-SGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTP  274 (363)
T ss_pred             cCCCEEEEeCCcccCCC--c-eEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHH
Confidence            68999999999987644  4 4999888888877643322110000 000111111111111 12222334445556778


Q ss_pred             HHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--CHHHHHHHHHHhhccccccccccccccccccc
Q 013079          316 FARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--TEEKANRLMNYLQNYAQFGFMAVSLGYYETLM  392 (450)
Q Consensus       316 l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~  392 (450)
                      +.+.|++++. .+..+. + .....+          .-..+.|...  +. ....+.+.|...+    +.+..-      
T Consensus       275 l~~~L~~i~g~~~~~~~-~-~~~~~~----------~~~~v~~~~~~~g~-~~~~l~~~L~~~~----~~I~~r------  331 (363)
T TIGR01437       275 FIEALNTLKGVSASIVQ-D-EAGRDI----------ARAEIRFDESELGM-TAADVVQALRQGE----PAIYTR------  331 (363)
T ss_pred             HHHHHhcCCCeEEEEec-C-CCCCcC----------ceEEEEEeccCCCC-CHHHHHHHHhcCC----CCEEEe------
Confidence            9999988743 443221 0 000000          0123555542  22 3567777775311    111110      


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          393 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                        +               .....+.+||++. .-+ +++++.|.++|.++
T Consensus       332 --~---------------~~~~~~~~~l~~~-~~~-~~e~~~~~~~l~~~  362 (363)
T TIGR01437       332 --G---------------YKANEGIIEIDPR-SVT-GGQLDIIVERIREI  362 (363)
T ss_pred             --e---------------eeecCCeEEEEee-cCC-HHHHHHHHHHHHHh
Confidence              0               1233678999999 655 77889998888764

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.92  E-value=4.9e-23  Score=210.69  Aligned_cols=335  Identities=14%  Similarity=0.126  Sum_probs=214.5

Q ss_pred             ccccccCccccCCH-HHHHHhhcCCC--CCCCCCccccCCCChhHHH-HHHHHHHHhCCCe--EEEe---cChHHHHHHH
Q 013079           60 MSIEASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLN-LSRQMAALEGTEA--AYCT---ASDKAGMSAI  130 (450)
Q Consensus        60 ~pi~~att~~~~~~-~~~~~~~~~~~--~n~~~~~~y~r~~~~~~~~-l~~~iA~l~g~~~--~~~t---sg~~~gt~ai  130 (450)
                      -++.+|.+++.+.+ +.+...+...|  |||++.|..|......+++ .++++++++|++.  ..++   +|   |++|+
T Consensus        37 l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~s---gt~an  113 (452)
T PTZ00094         37 LELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYS---GSPAN  113 (452)
T ss_pred             eeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCc---hHHHH
Confidence            35678888888775 88888888888  9999999888877777774 7889999999864  3466   78   99999


Q ss_pred             HHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCC-----ccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCC
Q 013079          131 SSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR-----ACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISN  200 (450)
Q Consensus       131 ~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~-----~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~N  200 (450)
                      .+++.+++++||+|+++..+|++....+......     ..++++..++.+     |+++|++++...++++|++.  ++
T Consensus       114 ~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s  191 (452)
T PTZ00094        114 FAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--AS  191 (452)
T ss_pred             HHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CC
Confidence            9999999999999999999998876554211100     012344444433     89999999843467777763  45


Q ss_pred             CcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCC----ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          201 PTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLS----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                      .+|.++|+++|.++|+++|+++++|++|  +.+..+    +. .++|++++|+||++++|.   ||+++.++++.+.+..
T Consensus       192 ~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~-~~~D~l~~S~hK~l~GP~---Gg~l~~~~~~~~~l~~  267 (452)
T PTZ00094        192 AYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF-PYADVVTTTTHKSLRGPR---SGLIFYRKKVKPDIEN  267 (452)
T ss_pred             CCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC-CCCcEEEcCCccCCCCCC---ceEEEEecccchHHHH
Confidence            6999999999999999999999999998  333332    22 279999999999885454   3666555544433322


Q ss_pred             Hhhh-hh-hccCCC-chHHHHHH-HHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccC
Q 013079          275 LHQG-AL-MLLGPT-MNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE  348 (450)
Q Consensus       275 ~~~~-~~-~~~g~~-~~~~~a~~-~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~  348 (450)
                      .... .. ...|+. ....++.. ++..+  .......++..++++++.+.|++.+.++..++-..              
T Consensus       268 ~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~--------------  333 (452)
T PTZ00094        268 KINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDN--------------  333 (452)
T ss_pred             hhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCC--------------
Confidence            1110 00 011222 11111111 22222  22334556678899999999988777666543111              


Q ss_pred             CCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc-ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013079          349 YGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT  427 (450)
Q Consensus       349 ~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~-G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~  427 (450)
                        .-.++.|..++.. ...+...|..   .| |.++. |-.|      +.             ....++.||+|++ ..+
T Consensus       334 --~~~~v~~~~~~~~-~~~~~~~L~~---~g-I~vs~~~~p~------~~-------------~~~~~~~vRis~~-~~t  386 (452)
T PTZ00094        334 --HLVLVDLRPFGIT-GSKMEKLLDA---VN-ISVNKNTIPG------DK-------------SALNPSGVRLGTP-ALT  386 (452)
T ss_pred             --ceEeecCCcCCCC-HHHHHHHHHH---CC-cEEecccCCC------CC-------------cCCCCCeEEECCH-HHH
Confidence              1124445444322 3445555543   22 45441 1111      00             0122578999998 655


Q ss_pred             H----HHHHHHHHHHHHHhhh
Q 013079          428 L----DQRWSQFEKALSRMQD  444 (450)
Q Consensus       428 ~----~~~i~~l~~al~~~~~  444 (450)
                      +    +++++.+.++|.++..
T Consensus       387 t~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        387 TRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             hCCCCHHHHHHHHHHHHHHHH
Confidence            5    7778888777776544

>PLN02672 methionine S-methyltransferase

Probab=99.92  E-value=1.1e-22  Score=220.10  Aligned_cols=218  Identities=15%  Similarity=0.143  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHHhCC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079          100 TVLNLSRQMAALEGT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ..+.+++.+++..|.     +.+++|+|   +++++..++.+++++||+|+++.|+|+.+...+.     ..|.++..++
T Consensus       735 lr~aLa~~la~~~Gv~~d~~e~IIvt~G---s~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~-----~~Ga~vv~Vp  806 (1082)
T PLN02672        735 PRPSILQFIKSNYGFPTDSCTEFVYGDT---SLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAK-----FLKANFRRIP  806 (1082)
T ss_pred             HHHHHHHHHHHHhCcCCCCCCEEEEeCC---HHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEe
Confidence            467888889888764     25889999   9999999999999999999999999999998875     3677777776


Q ss_pred             CC-------CHHHHHHhhhcC-CceEEEEecCC-CCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------
Q 013079          175 IS-------DHEMVNSAIVQG-RTKVLYFESIS-NPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------  236 (450)
Q Consensus       175 ~~-------d~~~l~~ai~~~-~t~lv~i~~~~-NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------  236 (450)
                      .+       |++++++++ ++ +.++|++++|| ||||.+.+   +++|+++|++||++||+|++|..+.++..      
T Consensus       807 l~~e~gf~lD~d~Le~al-~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~s  885 (1082)
T PLN02672        807 TKSSDGFKLTAKTLASTL-ETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWD  885 (1082)
T ss_pred             cccccCCCCCHHHHHHHh-ccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccc
Confidence            53       678899988 54 45689999997 99999965   77888899999999999999965544211      


Q ss_pred             ------CC------CCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCCCchHHHHHHHHc-----c
Q 013079          237 ------RL------GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-----R  298 (450)
Q Consensus       237 ------~~------g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-----~  298 (450)
                            .+      ...++++|+||.++++|+|+ ||+++++ ++++.+..... .  .......+.++..++.     .
T Consensus       886 l~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRI-GylIap~~eLi~~l~~~~~-~--s~~~~~~q~Aaaaalall~~~~  961 (1082)
T PLN02672        886 LKSILSRLKSSNPSFAVALLGGLSTELLSGGHEF-GFLALNDSVLIDAFHSAPG-L--SRPHSTLKYTIKKLLGLKNQKS  961 (1082)
T ss_pred             hhhHHHHhccccCCceEEEEeCcHHhhccHHHHh-eeEEeCCHHHHHHHHHhhh-h--cCCCcHHHHHHHHHHHHHhccC
Confidence                  00      14688999999999999999 9999864 58888866432 1  1122233333322221     1


Q ss_pred             C---CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079          299 I---PHLGLRMKEHCHRALIFARRMKKLGLKVLYP  330 (450)
Q Consensus       299 ~---~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p  330 (450)
                      .   +++.+..+.+.++++++.+.|+++++.+..|
T Consensus       962 ~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~~P  996 (1082)
T PLN02672        962 SDLLDGVAEQKKILKSRAERLKETLEACGWDVLEP  996 (1082)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEecC
Confidence            1   1233445557889999999999987665444

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.92  E-value=1.1e-22  Score=207.82  Aligned_cols=144  Identities=13%  Similarity=0.208  Sum_probs=116.7

Q ss_pred             eEEEecChHHHHHHHHHHHHH-----hccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC------------CCH
Q 013079          116 AAYCTASDKAGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI------------SDH  178 (450)
Q Consensus       116 ~~~~tsg~~~gt~ai~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~------------~d~  178 (450)
                      ++++|+|   +++|+..++.+     ++.+||+|++..|.|+.+...+. .. . .|.+++.++.            .|+
T Consensus       157 ~V~it~G---at~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~-l~-~-~g~~vv~i~~~~~~~~g~~~~~~d~  230 (521)
T TIGR03801       157 DLFAVEG---GTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPE-LP-R-YDFEVVRIKADEMTEDGTHTWQYPD  230 (521)
T ss_pred             eEEEeCC---HHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHH-Hh-c-CCcEEEEeecccccccccccCCCCH
Confidence            6899999   99999998876     68999999999999999987753 21 1 3566655543            156


Q ss_pred             HHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhc--CCEEEEeCCCCCCCCCccC---C--CCeEEEeCCC
Q 013079          179 EMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLSPAR---L--GADVVVHSIS  248 (450)
Q Consensus       179 ~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~--gi~livD~~~~~~~~~~~~---~--g~di~~~S~s  248 (450)
                      +++++++ ++++++|++++||||||.+.+   +++|+++|+++  +++||+|++|..+..+...   .  ...+++.|+|
T Consensus       231 ~~l~~~~-~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfS  309 (521)
T TIGR03801       231 KELEKLR-DPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFS  309 (521)
T ss_pred             HHHHHhc-CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcch
Confidence            8888877 789999999999999999977   77888889886  9999999999655432211   1  3679999999


Q ss_pred             CccccCccceEEEEEcCHH
Q 013079          249 KFISGGADIIAGAVCGPAN  267 (450)
Q Consensus       249 K~~g~~g~~igG~l~~~~~  267 (450)
                      |.+|++|+|+ ||++.+++
T Consensus       310 K~fg~~G~Rl-G~i~~~~~  327 (521)
T TIGR03801       310 KYFGATGWRL-GTIALHKD  327 (521)
T ss_pred             hhccCchhhh-hhhhcCch
Confidence            9999999999 99988754

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PLN03032 serine decarboxylase; Provisional

Probab=99.92  E-value=6.1e-23  Score=202.63  Aligned_cols=244  Identities=15%  Similarity=0.108  Sum_probs=184.5

Q ss_pred             CCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eE--EEecChHHHHHHHHHHHHHhc--cCCCEE
Q 013079           71 MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AA--YCTASDKAGMSAISSVLMQLC--SSGGHV  144 (450)
Q Consensus        71 ~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~--~~tsg~~~gt~ai~~al~~l~--~~gd~V  144 (450)
                      ..++.|.+++...+|||++.|.||+.+....+++++.+|+++|.+  .+  +||+|   |||||..++.+..  .++++|
T Consensus        38 ~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsG---GTEaNl~al~~ar~~~~~~~v  114 (374)
T PLN03032         38 GELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTC---GTEGNLHGILVGREVFPDGIL  114 (374)
T ss_pred             HHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCc---hHHHHHHHHHHHHHhCCCcEE
Confidence            357889999888899999999999999999999999999999974  34  99999   9999999987653  245689


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC---CceEEEEecCCCCcccccCHHHHHHHHH
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG---RTKVLYFESISNPTLAVANIPELSRLAH  216 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~---~t~lv~i~~~~NptG~v~~l~~I~~la~  216 (450)
                      +++..+|.++...+. .    +|+.++.++.+     |+++|+++| ++   ++.+|+++..+|++|.+.|+++|+++|+
T Consensus       115 i~s~~~H~Sv~kaa~-~----lg~~~~~V~~d~~g~id~~~L~~~i-~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~  188 (374)
T PLN03032        115 YASRESHYSVFKAAR-M----YRMEAVKVPTLPSGEIDYDDLERAL-AKNRDKPAILNVNIGTTVKGAVDDLDRILRILK  188 (374)
T ss_pred             EeCCCceeHHHHHHH-H----cCCCCeEeeeCCCCcCcHHHHHHHH-HHcCCCCEEEEEEecCcCCccCCCHHHHHHHHH
Confidence            999999999998875 2    34445555544     899999999 44   5778999999999999999999999999


Q ss_pred             hcC-----CEEEEeCCCCCC--CC-------CccCCCCeEEEeCCCCccc-cCccceEEEEEcCHHHHHHHHHHhh----
Q 013079          217 DKG-----VTVVVDNTFSPL--VL-------SPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQ----  277 (450)
Q Consensus       217 ~~g-----i~livD~~~~~~--~~-------~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~----  277 (450)
                      ++|     +++|+|++|+..  .+       +. ..++|.++.|.||+++ |.|  + |+++.++..++.+.....    
T Consensus       189 ~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~-~~~vDSis~s~HK~~g~P~g--~-G~ll~r~~~~~~~~~~~~Yl~~  264 (374)
T PLN03032        189 ELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF-RKPIGSVSVSGHKFLGCPMP--C-GVALTRKKHVKALSQNVEYLNS  264 (374)
T ss_pred             HhCCCCCCeeEEEEccchhhhhhccCCCcccCC-CcCCcEEEECcccccCCCcC--e-EEEEEEchhhHhhccCCcccCC
Confidence            996     589999998332  22       11 2368999999999999 666  4 777666665554421111    


Q ss_pred             hhhhccCCCc--hHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013079          278 GALMLLGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKV  327 (450)
Q Consensus       278 ~~~~~~g~~~--~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v  327 (450)
                      ...+..|+-.  ....+|..++  +.+.+.+++++..++++++.+.|++.+..+
T Consensus       265 ~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~  318 (374)
T PLN03032        265 RDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTC  318 (374)
T ss_pred             CCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            0011223222  2344444443  445677888889999999999999887643

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.92  E-value=3.8e-22  Score=199.33  Aligned_cols=307  Identities=14%  Similarity=0.116  Sum_probs=192.9

Q ss_pred             cCccccCC-HHHHHHhhcCCCCCCCC-CccccCC----CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc
Q 013079           65 SATFTVME-PETMRRMFAGELGPDRD-FFIYSRH----FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC  138 (450)
Q Consensus        65 att~~~~~-~~~~~~~~~~~~~n~~~-~~~y~r~----~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~  138 (450)
                      +++++.+. .+++.++..+.   |++ .|..|..    ..+..+++|++||+++|++.++++++   |+.|+..++..+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~---p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~s---G~~a~~~~~~~~~   92 (370)
T PRK05937         19 RSDTLVHEVEKRYRLYCRQF---PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPS---GYMANLGLCAHLS   92 (370)
T ss_pred             CCHHHHHHHHHHHHHhcccc---CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECC---hHHHHHHHHHHhC
Confidence            34444444 35665554433   554 6667766    67889999999999999988888888   8888876655556


Q ss_pred             cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhc-----CCceEEEEecCCCCcccccCHHHHHH
Q 013079          139 SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVANIPELSR  213 (450)
Q Consensus       139 ~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~l~~I~~  213 (450)
                      ++||.|++...+|.++...+.. .   .+..+.+ +..|+++|++.+..     +++.+|++++++|++|.++|+++|.+
T Consensus        93 ~~~d~ii~d~~~H~sv~~~~~~-~---~~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~  167 (370)
T PRK05937         93 SVTDYVLWDEQVHISVVYSLSV-I---SGWHQSF-RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIA  167 (370)
T ss_pred             CCCCEEEEEhhhhHHHHHHHHH-c---CCceEEe-cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHH
Confidence            6788888888999888887742 2   2444443 55689999998831     34668889999999999999999999


Q ss_pred             HHHhcCCEEEEeCCCC--CCCCCcc----CCC---CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccC
Q 013079          214 LAHDKGVTVVVDNTFS--PLVLSPA----RLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG  284 (450)
Q Consensus       214 la~~~gi~livD~~~~--~~~~~~~----~~g---~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g  284 (450)
                      +|+++|+++|+|++|+  .+..+..    .++   .++++.|+||.+|+.|   +|++ ..++....+....... ...+
T Consensus       168 l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G---~~vl-~~~~~~~~~~~~~~~~-~~s~  242 (370)
T PRK05937        168 LSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG---AALL-SSSEVKQDLMLNSPPL-RYST  242 (370)
T ss_pred             HHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc---eEEE-cCHHHHHHHHHhCCCC-eecC
Confidence            9999999999999993  3443321    122   2467889999999877   2544 4455555444222111 1222


Q ss_pred             CCchHHHHHHHHccCCcH----HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          285 PTMNPKVAFELSERIPHL----GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       285 ~~~~~~~a~~~~~~~~~l----~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +. ++..+..+...++.+    ....++..++++++.+.|...     .+                     +.+..|.++
T Consensus       243 ~~-~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~-----~~---------------------~~~~~i~~~  295 (370)
T PRK05937        243 GL-PPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSA-----AP---------------------GCVQPIFLP  295 (370)
T ss_pred             CC-CHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC-----CC---------------------CCEEEEEeC
Confidence            22 222121111122222    222333455555555444321     01                     113345666


Q ss_pred             CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       361 ~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      +.. ...+.+.|...   | +.++.  .|    .|                  ..+.||||++ ..+++++++.+.++|.
T Consensus       296 ~~~-~~~~~~~L~~~---g-i~v~~--~~----~~------------------~~~~iRis~~-~~~t~edid~l~~~L~  345 (370)
T PRK05937        296 GIS-EQELYSKLVET---G-IRVGV--VC----FP------------------TGPFLRVNLH-AFNTEDEVDILVSVLA  345 (370)
T ss_pred             Chh-HHHHHHHHHHC---C-eeEEe--eC----CC------------------CCCEEEEEcC-CCCCHHHHHHHHHHHH
Confidence            443 45666666642   3 33331  11    11                  1357999999 9899999999998888


Q ss_pred             Hhhh
Q 013079          441 RMQD  444 (450)
Q Consensus       441 ~~~~  444 (450)
                      ++.+
T Consensus       346 ~~~~  349 (370)
T PRK05937        346 TYLE  349 (370)
T ss_pred             HHHH
Confidence            7654

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.91  E-value=8e-22  Score=195.71  Aligned_cols=304  Identities=17%  Similarity=0.191  Sum_probs=204.0

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ..+...++++.+++++|.+.+++|+|   |++|+++++.++ +++||+|+++.++|.++...+.     ..|.++.+++.
T Consensus        16 ~~~~~~~~~~~la~~~~~~~~~~~~s---gt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~   87 (352)
T cd00616          16 LGPKVREFEKAFAEYLGVKYAVAVSS---GTAALHLALRALGIGPGDEVIVPSFTFVATANAIL-----LLGATPVFVDI   87 (352)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECC---HHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-----HcCCeEEEEec
Confidence            35789999999999999999999999   999999999988 5899999999999999887764     25778888765


Q ss_pred             C------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCC--CCeEEEeC
Q 013079          176 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARL--GADVVVHS  246 (450)
Q Consensus       176 ~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~--g~di~~~S  246 (450)
                      +      |++++++++ ++++++|+++   |++|.+.|+++|.++|+++|+++|+|++|+ +.......+  ..|+.+.|
T Consensus        88 ~~~~~~~d~~~l~~~i-~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S  163 (352)
T cd00616          88 DPDTYNIDPELIEAAI-TPRTKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFS  163 (352)
T ss_pred             CCCcCCcCHHHHHHhc-CcCCeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEc
Confidence            3      789999988 7889999875   479999999999999999999999999983 222221112  25788888


Q ss_pred             CC--CccccCccceEEEEEcC-HHHHHHHHHHhhhhhh---------c--cCCCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079          247 IS--KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM---------L--LGPTMNPKVAFELSERIPHLGLRMKEHCHR  312 (450)
Q Consensus       247 ~s--K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~---------~--~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~  312 (450)
                      ++  |+++++.   ||+++.+ +++.+.+...+.+...         .  ....+....+......++.++...++.+++
T Consensus       164 ~~~~K~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~  240 (352)
T cd00616         164 FHPTKNLTTGE---GGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREI  240 (352)
T ss_pred             CCCCCCCcccC---ceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            76  9995332   5777654 6777766554331110         0  112233444444444445566666777888


Q ss_pred             HHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccccc
Q 013079          313 ALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       313 ~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      .+++.+.|++++ .++..+....              .....++.|.+++  ......+.+.|...   | |  ..+..+
T Consensus       241 ~~~~~~~L~~~~g~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~L~~~---g-I--~~~~~~  300 (352)
T cd00616         241 AERYKELLADLPGIRLPDVPPGV--------------KHSYHLYVIRLDPEAGESRDELIEALKEA---G-I--ETRVHY  300 (352)
T ss_pred             HHHHHHHhcCCCCccCCCCCCCC--------------ceeeEEEEEEECCcCCCCHHHHHHHHHHC---C-C--Ceeeec
Confidence            899999998764 3443322100              0123478888873  23456777777642   2 3  223222


Q ss_pred             ccccccccc------cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          390 TLMSCSGSS------TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       390 s~~~~~~~~------~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      ....+....      .....+....    +..+.||++++ ...++++++.+.++|+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~l~l~~~-~~~t~~di~~i~~~l~  352 (352)
T cd00616         301 PPLHHQPPYKKLLGYPPGDLPNAED----LAERVLSLPLH-PSLTEEEIDRVIEALR  352 (352)
T ss_pred             CccccCHhhhhccCCCcCCChHHHH----HHhCeEEccCC-CCCCHHHHHHHHHHhC
Confidence            211111000      0011111111    22578999999 9899999999988763

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.91  E-value=3.3e-22  Score=198.62  Aligned_cols=288  Identities=15%  Similarity=0.172  Sum_probs=194.0

Q ss_pred             hhHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCC-chhHH-HHHHHhCCCccCeeEEE
Q 013079           99 PTVLNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL-YGGTH-ALLTHFFPRACNITTTF  172 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~-y~~~~-~~~~~~~~~~~g~~v~~  172 (450)
                      ...+++++.+|+++|++    .+++++|   |++++..++.+++.++|++++..+. |+... ..+.     ..|.++..
T Consensus        31 ~~~~~~~~~la~~~~~~~~~~~i~~~~~---gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~-----~~g~~~~~  102 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNHTCVLLQGS---GTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICE-----YLGIPHTD  102 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEeCC---cHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHH-----HcCCceEE
Confidence            67899999999999975    3568999   9999999999998888876655544 44322 2222     25777777


Q ss_pred             eCCC-----CHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEE
Q 013079          173 VDIS-----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVV  244 (450)
Q Consensus       173 v~~~-----d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~  244 (450)
                      ++.+     |++++++++.. +++++|++.+++|++|.+.|+++|+++|+++|+++|+|+++  +...++...+++|+++
T Consensus       103 i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~  182 (355)
T TIGR03301       103 LNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALI  182 (355)
T ss_pred             EecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEE
Confidence            6643     78999998832 35667888899999999999999999999999999999986  3334455566899999


Q ss_pred             eCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhh----------------hhhhccCCCchHHHHHHHHccC---CcHHH
Q 013079          245 HSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQ----------------GALMLLGPTMNPKVAFELSERI---PHLGL  304 (450)
Q Consensus       245 ~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~----------------~~~~~~g~~~~~~~a~~~~~~~---~~l~~  304 (450)
                      .|++|++ |++|  + |+++.++++++.+.....                +......+.....++..++..+   ..+.+
T Consensus       183 ~s~~K~l~~~~G--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~  259 (355)
T TIGR03301       183 ASANKCLEGVPG--F-GFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPA  259 (355)
T ss_pred             ecCCcccccCCc--e-eEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHH
Confidence            9999987 5566  5 999999888877642100                0000111111112222222221   22566


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccc
Q 013079          305 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~  382 (450)
                      ..++++++++++.+.|++++.++..|...                ..+.+++|.++..  .....+...|...   | +.
T Consensus       260 ~~~~~~~~~~~~~~~L~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~  319 (355)
T TIGR03301       260 RIARYRRNRELLVDGLRALGFQPLLPERW----------------QSPIIVSFLYPDDPDFDFDDFYQELKER---G-FV  319 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeeecCCCC----------------CCCcEEEEECCCCCcchHHHHHHHHHHC---C-EE
Confidence            67778889999999998887654433210                1344678888741  2345677777642   2 34


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ++.|+.                        ...+.||||+. ..++.+.++.+.++|.++
T Consensus       320 i~~~~~------------------------~~~~~iRis~~-~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       320 IYPGKL------------------------TLADTFRIGTI-GEIDAADIERLLEAIKDA  354 (355)
T ss_pred             EECCcc------------------------ccccEEEEecC-CCCCHHHHHHHHHHHHhh
Confidence            443311                        00267999986 556677788888777653

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PLN02822 serine palmitoyltransferase

Probab=99.91  E-value=1.2e-21  Score=201.09  Aligned_cols=291  Identities=16%  Similarity=0.192  Sum_probs=196.5

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+...+|+++||++++.+..++.++   |..++..++.+++++||.|++....|.++...+.     +.+.++.+++.+
T Consensus       152 ~~~~~~~Lee~La~~~~~~~~i~~s~---G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~-----ls~~~~~~~~~n  223 (481)
T PLN02822        152 TIDVHLDCETKIAKFLGTPDSILYSY---GLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLY-----LSRSTIVYFKHN  223 (481)
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECC---HHHHHHHHHHHhCCCCCEEEEeCCccHHHHHHHH-----HcCCeEEEECCC
Confidence            45678999999999999766555555   5557888999999999999988777766655543     346688888888


Q ss_pred             CHHHHHHhhhc--------CCc-eEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCC------ccC--
Q 013079          177 DHEMVNSAIVQ--------GRT-KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLS------PAR--  237 (450)
Q Consensus       177 d~~~l~~ai~~--------~~t-~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~------~~~--  237 (450)
                      |.++++..++.        +++ ++|++++++|++|.+.|+++|.++|++||+++|+||+|+  -+...      ...  
T Consensus       224 d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~  303 (481)
T PLN02822        224 DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVP  303 (481)
T ss_pred             CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCC
Confidence            88777766521        234 799999999999999999999999999999999999984  22210      011  


Q ss_pred             -CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCch--HHHHHHHHccCCcHHHHHHHHHHHHH
Q 013079          238 -LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRAL  314 (450)
Q Consensus       238 -~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~--~~~a~~~~~~~~~l~~~~~~~~~~~~  314 (450)
                       ..+|+++.|++|.+|+.|    |++++++++++.++.... ...+.++.+.  +.++..++..++...+..++++++++
T Consensus       304 ~~~~dii~~s~sKalg~~G----G~i~g~~~ii~~~~~~~~-~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~  378 (481)
T PLN02822        304 IEKIDIITAAMGHALATEG----GFCTGSARVVDHQRLSSS-GYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIA  378 (481)
T ss_pred             CCCCeEEEecchhhhhhCC----eEEEcCHHHHHHHHhcCC-ceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence             146899999999999765    999999999887764433 2223333222  22222333333333456677889999


Q ss_pred             HHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------HHHHHHHHHhh-ccccccccccc
Q 013079          315 IFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMNYLQ-NYAQFGFMAVS  384 (450)
Q Consensus       315 ~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~~~~~~~~~l~-~~~~~g~i~vs  384 (450)
                      ++.+.|++. ++.+..|                   +.++++.+.+++.        .....|.+.|. .   .| +.++
T Consensus       379 ~l~~~L~~~~g~~~~~~-------------------~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e---~G-V~v~  435 (481)
T PLN02822        379 LLHKGLSDIPGLSIGSN-------------------TLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKE---DS-VLVV  435 (481)
T ss_pred             HHHHHHHhcCCcccCCC-------------------CCCCEEEEEeCCCcccccchHHHHHHHHHHHHhc---CC-EEEE
Confidence            999999875 4443322                   2456888888631        12356676664 3   23 4444


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .+...+.      .            .+-.+..+||++. ...+++.++.+.++|+++
T Consensus       436 ~~~~~~~------~------------~~~~~~~lRi~is-~~~t~edI~~~~~~l~~~  474 (481)
T PLN02822        436 VSKRSTL------D------------KCRLPVGIRLFVS-AGHTESDILKASESLKRV  474 (481)
T ss_pred             eeCCCCc------C------------CCCCCCcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence            3311000      0            0111346999988 767777777777777654

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.91  E-value=3.2e-22  Score=201.97  Aligned_cols=288  Identities=17%  Similarity=0.123  Sum_probs=192.5

Q ss_pred             ChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHH-HHHHHhccC--CCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079           98 NPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAIS-SVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~-~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      .+.++++++.+++++|.+  .++++++   |+++.+ +++..++.+  ||+|+++++.|+++...+.....+ .|.++.+
T Consensus        63 ~~~~~~~~~~la~~~g~~~~~v~~~~~---g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~-~g~~~~~  138 (398)
T cd00613          63 LQALFELQTMLCELTGMDVANASLQDE---ATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEP-LGIEVVE  138 (398)
T ss_pred             HHHHHHHHHHHHHHHCCCccceeccCc---hHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhccc-CCcEEEE
Confidence            356789999999999976  6777776   554444 444445565  999999999999998887644333 5678887


Q ss_pred             eCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCH-HHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEE
Q 013079          173 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANI-PELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV  244 (450)
Q Consensus       173 v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l-~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~  244 (450)
                      ++.+     |++++++++ .++|++|++++++ ++|.+.|+ ++|+++|+++|+++|+|+++.  ....++...++|+++
T Consensus       139 v~~~~~~~~d~~~l~~~i-~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~  216 (398)
T cd00613         139 VPSDEGGTVDLEALKEEV-SEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVV  216 (398)
T ss_pred             eccCCCCCcCHHHHHHhc-CCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEE
Confidence            7754     689999999 8889999999985 89999885 999999999999999999872  333445566899999


Q ss_pred             eCCCCccccC---ccceEEEEEcCHHHHHHHHHHh---------------------------hhhh-hccCCCchHHHHH
Q 013079          245 HSISKFISGG---ADIIAGAVCGPANLVNSMMDLH---------------------------QGAL-MLLGPTMNPKVAF  293 (450)
Q Consensus       245 ~S~sK~~g~~---g~~igG~l~~~~~~~~~l~~~~---------------------------~~~~-~~~g~~~~~~~a~  293 (450)
                      .|+||++++.   |.+. |+++.++++++.+....                           .+.. ...+.......++
T Consensus       217 ~s~~K~~~p~g~Ggp~~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~  295 (398)
T cd00613         217 GNLQKTGVPHGGGGPGA-GFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAA  295 (398)
T ss_pred             eeccccCCCCCCCCCce-eEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHH
Confidence            9999998321   4554 99988877766541100                           0000 0111111222222


Q ss_pred             HHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHH
Q 013079          294 ELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLM  369 (450)
Q Consensus       294 ~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~  369 (450)
                      ..+.  ....+.+..+++.++++++.+.|++++... .+.  .               ...+.++|.++.  ......+.
T Consensus       296 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~--~---------------~~~~~v~~~~~~~~~~~~~~~~  357 (398)
T cd00613         296 MYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVL-PFN--G---------------PFFHEFVLRLPPLYGIRAEDLA  357 (398)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCC--C---------------CeeEEEEEEcCCcchHHHHHHH
Confidence            2222  222345566778889999999998876532 111  0               122356777764  23466777


Q ss_pred             HHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          370 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       370 ~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                      ..|...   | +.+..      .. +                 ...+.||+|+. ..+++++++.+.++|
T Consensus       358 ~~L~~~---g-i~~~~------~~-~-----------------~~~~~lRis~~-~~~t~edid~~~~~L  398 (398)
T cd00613         358 KALIDG---G-FHAPT------MY-L-----------------PVDGTLMIEPT-ETETKEELDALLEAL  398 (398)
T ss_pred             Hhhhhc---C-ccccc------cc-c-----------------CCCCeEEEEcC-CCCCHHHHHHHHHhC
Confidence            777642   2 21110      00 0                 01468999999 999999999987764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.91  E-value=5e-22  Score=200.13  Aligned_cols=275  Identities=14%  Similarity=0.064  Sum_probs=191.5

Q ss_pred             CccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC----eEEE--ecChHHHHHHHHHHHHHhc
Q 013079           66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE----AAYC--TASDKAGMSAISSVLMQLC  138 (450)
Q Consensus        66 tt~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~----~~~~--tsg~~~gt~ai~~al~~l~  138 (450)
                      ||++.+++ +.|...+...++||++   .++.. ...+++++.+|+++|.+    .+++  |+|   |||||++++.+..
T Consensus        50 tt~~~p~~~~~~~~~l~~~~~np~s---~~~~~-~le~~~~~~la~llg~~~~~~~~~g~~TsG---gTEAn~~al~~ar  122 (431)
T TIGR01788        50 TTWMEPEARKLMDETINKNMIDKDE---YPQTA-EIENRCVNMLADLWHAPAKDAEAVGTSTIG---SSEAIMLGGLAMK  122 (431)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCccc---CccHH-HHHHHHHHHHHHHhCCCCCCCCCeEEEech---HHHHHHHHHHHHH
Confidence            67777765 7778888878899865   45554 78899999999999975    3544  899   9999999987643


Q ss_pred             ----c----CC-----CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCC
Q 013079          139 ----S----SG-----GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       139 ----~----~g-----d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                          .    .|     .+|+++..+|.++...+.     ..|+++.+++++      |+++|++++ +++|.+|+++..+
T Consensus       123 ~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~-----~lg~~v~~i~~d~~~~~vd~~~L~~~i-~~~t~lV~~t~g~  196 (431)
T TIGR01788       123 WRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFAR-----YFDVELREVPMDPGRYVIDPEQVVEAV-DENTIGVVCILGT  196 (431)
T ss_pred             HHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHH-----HcCceeEEEecCCCceeeCHHHHHHHH-hhCCeEEEEEeCC
Confidence                1    11     379999999999988874     256777776653      789999999 8889999999999


Q ss_pred             CCcccccCHHHHHHHHHhc------CCEEEEeCCCCCCC---------CCccCCCCeEEEeCCCCcc-ccCccceEEEEE
Q 013079          200 NPTLAVANIPELSRLAHDK------GVTVVVDNTFSPLV---------LSPARLGADVVVHSISKFI-SGGADIIAGAVC  263 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~------gi~livD~~~~~~~---------~~~~~~g~di~~~S~sK~~-g~~g~~igG~l~  263 (450)
                      |+||.++|+++|+++|+++      |+++|+|++|+.+.         .+....++|.++.|.||++ ++.|  + |+++
T Consensus       197 t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g--~-G~l~  273 (431)
T TIGR01788       197 TYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG--V-GWVI  273 (431)
T ss_pred             CCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCC--c-EEEE
Confidence            9999999999999999999      99999999995311         1222337899999999987 7777  4 7765


Q ss_pred             c-CHHHH-HHHHH---Hhhhh---hhccCCCc--hHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCC
Q 013079          264 G-PANLV-NSMMD---LHQGA---LMLLGPTM--NPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYP  330 (450)
Q Consensus       264 ~-~~~~~-~~l~~---~~~~~---~~~~g~~~--~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p  330 (450)
                      . +++.. +.+..   +..+.   ....+...  .....|..++.  ...+.+..++..++++++.+.|++.+. ++..|
T Consensus       274 ~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~  353 (431)
T TIGR01788       274 WRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISD  353 (431)
T ss_pred             EeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeC
Confidence            4 43322 32211   00000   00111111  12223443332  234666777888999999999998864 65544


Q ss_pred             CCCCCchhHHHHHHhccCCCcCcEEEEEeCCH----HHHHHHHHHhhc
Q 013079          331 GLEDHPHHELLKSMANKEYGFGGLLCLDMETE----EKANRLMNYLQN  374 (450)
Q Consensus       331 ~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~----~~~~~~~~~l~~  374 (450)
                      . +                 ..++++|.+++.    .....+.+.|..
T Consensus       354 ~-~-----------------~~~iV~Fr~~~~~~~~~~~~~l~~~L~~  383 (431)
T TIGR01788       354 G-S-----------------GIPLVAFKLKDDADPGYTLYDLSHRLRE  383 (431)
T ss_pred             C-C-----------------CceEEEEEeCCCCCCCcCHHHHHHHHHH
Confidence            2 0                 234899998741    124456666664

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.91  E-value=3e-22  Score=202.46  Aligned_cols=330  Identities=18%  Similarity=0.192  Sum_probs=203.7

Q ss_pred             cccccCccccCCH-HHHHHhhcCCC--CCCCCCccccCCCChhHHH-HHHHHHHHhCCCeE-EEecChHHHHHHHHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-YCTASDKAGMSAISSVLM  135 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~--~n~~~~~~y~r~~~~~~~~-l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~  135 (450)
                      .+..+.+++.+.+ +++...+...|  |+|++.|..+....+..++ .++.+++++|++.. ++++|   |++|+.+++.
T Consensus        23 ~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~s---gt~a~~~~l~   99 (402)
T cd00378          23 ELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHS---GSQANLAVYF   99 (402)
T ss_pred             eeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCC---cHHHHHHHHH
Confidence            4455666666554 55555544444  6666555334333334444 45567889998764 55568   8999999999


Q ss_pred             HhccCCCEEEEeCCCchhHHHHHHH-hCCCccCeeEEEeC--CC------CHHHHHHhhhcCCceEEEEecCCCCccccc
Q 013079          136 QLCSSGGHVVAARTLYGGTHALLTH-FFPRACNITTTFVD--IS------DHEMVNSAIVQGRTKVLYFESISNPTLAVA  206 (450)
Q Consensus       136 ~l~~~gd~Vi~~~~~y~~~~~~~~~-~~~~~~g~~v~~v~--~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~  206 (450)
                      +++++||+|++++|+|+++...... ... ..|.++..++  .+      |++++++++.++++++|++++++||  ...
T Consensus       100 ~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~--~~~  176 (402)
T cd00378         100 ALLEPGDTIMGLDLSHGGHLTHGSFTKVS-ASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP--RPI  176 (402)
T ss_pred             HhcCCCCEEEEecCccCcccccccccccc-ccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC--CCc
Confidence            9999999999999999876543211 112 2465544432  22      8999999884468999999888765  577


Q ss_pred             CHHHHHHHHHhcCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhh
Q 013079          207 NIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGA  279 (450)
Q Consensus       207 ~l~~I~~la~~~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~  279 (450)
                      |+++|+++|+++|+++|+|++| .++.     ..+.. ++|+++.|+||+++  |.+ ||+++.++ ++++.+.......
T Consensus       177 ~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~dv~~~s~sK~l~--G~~-gg~i~~~~~~~~~~l~~~~~~~  252 (402)
T cd00378         177 DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GADVVTTTTHKTLR--GPR-GGLILTRKGELAKKINSAVFPG  252 (402)
T ss_pred             CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCcEEEeccccCCC--CCC-ceEEEeccHHHHHHHHHHhCcc
Confidence            9999999999999999999996 3332     12223 67999999999884  344 47777765 8888876544311


Q ss_pred             hhccCCC-chHHHH-HHHHc-cCC-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          280 LMLLGPT-MNPKVA-FELSE-RIP-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       280 ~~~~g~~-~~~~~a-~~~~~-~~~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                        ..++. .....+ ..++. ... ....+.+++.++++++.+.|+++++.+....                  ..++++
T Consensus       253 --~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~v  312 (402)
T cd00378         253 --LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGG------------------TDNHLV  312 (402)
T ss_pred             --ccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecC------------------CCCeEE
Confidence              12221 122211 11121 222 4556667788999999999998876543211                  135688


Q ss_pred             EEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC----HHH
Q 013079          356 CLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQ  430 (450)
Q Consensus       356 ~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~----~~~  430 (450)
                      ++.++. ......+.+.|..   .| +.+..+..      |....    +       ......+||++. ..+    .++
T Consensus       313 ~v~~~~~~~~~~~~~~~l~~---~g-I~v~~~~~------p~~~~----~-------~~~~~~lRi~~~-~~~~~~~~~~  370 (402)
T cd00378         313 LVDLRPKGITGKAAEDALEE---AG-ITVNKNTL------PWDPS----S-------PFVPSGIRIGTP-AMTTRGMGEE  370 (402)
T ss_pred             EEeCCccCCCHHHHHHHHHH---cC-cEEcCCcC------CCCCC----C-------CCCCCeeEecCH-HHHHhCCCHH
Confidence            898862 1123344454543   22 34332211      11110    0       012467999887 422    355


Q ss_pred             HHHHHHHHHHHh
Q 013079          431 RWSQFEKALSRM  442 (450)
Q Consensus       431 ~i~~l~~al~~~  442 (450)
                      .++.+.++|.++
T Consensus       371 di~~~~~~l~~~  382 (402)
T cd00378         371 EMEEIADFIARA  382 (402)
T ss_pred             HHHHHHHHHHHH
Confidence            566666666653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK02769 histidine decarboxylase; Provisional

Probab=99.91  E-value=4.4e-22  Score=197.94  Aligned_cols=245  Identities=15%  Similarity=0.103  Sum_probs=179.0

Q ss_pred             CCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--e--EEEecChHHHHHHHHHHHHHh--ccCCCEE
Q 013079           71 MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--A--AYCTASDKAGMSAISSVLMQL--CSSGGHV  144 (450)
Q Consensus        71 ~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~--~~~tsg~~~gt~ai~~al~~l--~~~gd~V  144 (450)
                      ..++++.......+|||++.+.|++......+++++.+|+++|++  .  .+||+|   ||||+..++...  ..++++|
T Consensus        37 ~~~~~~~~~~~~n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsG---gTean~~a~~~ar~~~~~~~i  113 (380)
T PRK02769         37 SALKRFFSFSINNCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNG---GTEGNLYGCYLARELFPDGTL  113 (380)
T ss_pred             HHHHHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecC---hHHHHHHHHHHHHHhCCCcEE
Confidence            446777777777899999999999988888889999999999974  3  389999   999998887654  2467899


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeCC-----CCHHHHHHhhhcCC---ceEEEEecCCCCcccccCHHHHHHHHH
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGR---TKVLYFESISNPTLAVANIPELSRLAH  216 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~ai~~~~---t~lv~i~~~~NptG~v~~l~~I~~la~  216 (450)
                      +++..+|+++...+..     .|++...++.     .|+++|++++ +++   |.+|+++.++|++|.+.|+++|+++|+
T Consensus       114 i~s~~~H~Sv~ka~~~-----lg~~~~~V~~~~~g~id~~~L~~~i-~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~  187 (380)
T PRK02769        114 YYSKDTHYSVSKIARL-----LRIKSRVITSLPNGEIDYDDLISKI-KENKNQPPIIFANIGTTMTGAIDNIKEIQEILK  187 (380)
T ss_pred             EeCCCceehHHHHHHH-----cCCCCceeccCCCCcCcHHHHHHHH-HhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence            9999999999988752     2333333332     2899999999 554   899999999999999999999999999


Q ss_pred             hcC---CEEEEeCCCCCCC---------CCccCCCCeEEEeCCCCccc-cCccceEEEEEcCHHHHHHHHHHhh----hh
Q 013079          217 DKG---VTVVVDNTFSPLV---------LSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQ----GA  279 (450)
Q Consensus       217 ~~g---i~livD~~~~~~~---------~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~----~~  279 (450)
                      ++|   +++|+|++|+...         ++... ++|.++.|.||+++ |.|  + |+++.+++....+.....    ..
T Consensus       188 ~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g--~-G~l~~r~~~~~~~~~~~~yl~~~d  263 (380)
T PRK02769        188 KIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMP--C-GIVLAKKKYVERISVDVDYIGSRD  263 (380)
T ss_pred             HhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCC--c-EEEEEehhhhhhcccCccccCCCC
Confidence            998   6999999994322         22223 89999999999998 555  4 777666665554421101    00


Q ss_pred             hhccCCC--chHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013079          280 LMLLGPT--MNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVL  328 (450)
Q Consensus       280 ~~~~g~~--~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~  328 (450)
                      ....|+.  ......+.+++.  ...+.+..++..++++++.+.|++.+.++.
T Consensus       264 ~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~  316 (380)
T PRK02769        264 QTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAW  316 (380)
T ss_pred             CCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            0112222  223344444433  234566777788999999999988777543

>PLN02397 aspartate transaminase

Probab=99.90  E-value=1.5e-21  Score=198.08  Aligned_cols=224  Identities=12%  Similarity=0.098  Sum_probs=146.9

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCC--------CeE--EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHH
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGT--------EAA--YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTH  160 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~--------~~~--~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~  160 (450)
                      +.|+.  .....+||+.+++++..        +.+  ..+.+ ++|..++..++..++.+||+|++++|.|+.+...+. 
T Consensus        85 ~~Y~~--~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~-g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~-  160 (423)
T PLN02397         85 KEYLP--IEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLS-GTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFR-  160 (423)
T ss_pred             CCCCC--cCCCHHHHHHHHHHHcCCCCchhhcCeeEeeeccc-chHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH-
Confidence            34553  33456788888886531        122  11333 002333445555556799999999999999988875 


Q ss_pred             hCCCccCeeEEEeCC-------CCHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013079          161 FFPRACNITTTFVDI-------SDHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF  228 (450)
Q Consensus       161 ~~~~~~g~~v~~v~~-------~d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~  228 (450)
                          ..|.++..++.       .|++.+++.+.  +++++++++++||||||.+.+   +++|+++|+++|+++|+|++|
T Consensus       161 ----~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y  236 (423)
T PLN02397        161 ----DAGVPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAY  236 (423)
T ss_pred             ----HcCCeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc
Confidence                35777766643       27888877773  256889999999999999975   667888999999999999999


Q ss_pred             CCCCCCc-----c---CC----CCeEEEeCCCCccccCccceEEEEE---cCHHHHHHHH----HHhhhhhhccCCCchH
Q 013079          229 SPLVLSP-----A---RL----GADVVVHSISKFISGGADIIAGAVC---GPANLVNSMM----DLHQGALMLLGPTMNP  289 (450)
Q Consensus       229 ~~~~~~~-----~---~~----g~di~~~S~sK~~g~~g~~igG~l~---~~~~~~~~l~----~~~~~~~~~~g~~~~~  289 (450)
                      ..+.++.     .   .+    ...++++|+||.++++|+|+ ||++   .++++++.+.    ...... ....+.+.+
T Consensus       237 ~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~Rv-G~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q  314 (423)
T PLN02397        237 QGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERV-GALSVVCKSADVAVRVKSQLKLIARPM-YSNPPIHGA  314 (423)
T ss_pred             CCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccc-eEEEEEeCCHHHHHHHHHHHHHHHhcc-cCCCcHHHH
Confidence            7665421     0   11    24688999999999999999 9974   3566554433    222211 011222334


Q ss_pred             HHHHHHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          290 KVAFELSERIP-------HLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       290 ~~a~~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      .++..++....       ++....+++.++++.+.+.|++++
T Consensus       315 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~  356 (423)
T PLN02397        315 SIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARG  356 (423)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33333333211       133445567899999999999875

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.90  E-value=2.2e-21  Score=191.30  Aligned_cols=206  Identities=17%  Similarity=0.134  Sum_probs=147.0

Q ss_pred             ChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEe---CCCchhHHHHHHHhCCCccCeeEEE
Q 013079           98 NPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA---RTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~---~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      .+..+++++.+|+++|.  +++++|+|   |++||..++.+++++||+|+++   .|.|..+...+.     ..|.++. 
T Consensus        53 ~~~~~~Le~~lA~~~g~~~e~ilv~~g---g~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~-----l~ga~~~-  123 (346)
T TIGR03576        53 AIFEEKVQELGREHLGGPEEKILVFNR---TSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCK-----LAGAEYF-  123 (346)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEEECC---HHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHH-----HcCCEEe-
Confidence            47789999999999998  88999999   9999999999999999999975   467777766654     3566543 


Q ss_pred             eCCCCHHHHHHhhhcCCceEEEEecCCCCcccc---cCHHHHHHHHHhcCCEEEEeCCCCCCC---CC---ccCCCCeEE
Q 013079          173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLV---LS---PARLGADVV  243 (450)
Q Consensus       173 v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~---~~---~~~~g~di~  243 (450)
                       ...++++++.   .+++++|+++ .+|++|.+   .++++|+++|+++|+++++||+|+...   ..   ....+.|++
T Consensus       124 -~~~~l~~l~~---~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~div  198 (346)
T TIGR03576       124 -ESDELSELKK---IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLV  198 (346)
T ss_pred             -ccCCHHHHhh---CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEE
Confidence             3346666532   3468888885 46899998   689999999999999999999994321   11   123467999


Q ss_pred             EeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          244 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       244 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      +.|+||.  ++|+|+ ||+++++++++.+........ .+.+.+.+.++..++.... ...+.+.+.++++.+.+.+++
T Consensus       199 v~s~SKa--laG~r~-G~v~~~~~li~~l~~~~~~~~-~s~~~~~~~aa~~aL~~~~-~~~~~~~l~~r~~~~~~~l~~  272 (346)
T TIGR03576       199 VTSTDKL--MDGPRG-GLLAGRKELVDKIKSVGEQFG-LEAQAPLLAAVVRALEEFE-LSRIRDAFKRKEEVYLRLFDK  272 (346)
T ss_pred             Eeccchh--ccccce-EEEEeCHHHHHHHHHhhcCcc-cCccHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHh
Confidence            9999994  456775 999999999999887765321 1223333333333333322 233344556666666666664

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK10534 L-threonine aldolase; Provisional

Probab=99.90  E-value=1.8e-21  Score=191.86  Aligned_cols=242  Identities=19%  Similarity=0.202  Sum_probs=163.5

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .++...+|++.||+++|.+.+++++|   |++++.+++..++.+||+|+++.|.|........ . ....+.++..++.+
T Consensus        32 ~~~~~~~L~~~la~~~g~~~~~v~~~---g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~  106 (333)
T PRK10534         32 DDPTVNALQDYAAELSGKEAALFLPT---GTQANLVALLSHCERGEEYIVGQAAHNYLYEAGG-A-AVLGSIQPQPIDAA  106 (333)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCc---hHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCc-h-HHhcCceEEeecCC
Confidence            68899999999999999999999999   9999999998889999999998887753322110 0 01112455555432


Q ss_pred             -----CHHHHHHhhhcC------CceEEEEecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCCC--CC---CCCccC
Q 013079          177 -----DHEMVNSAIVQG------RTKVLYFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFS--PL---VLSPAR  237 (450)
Q Consensus       177 -----d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~--~~---~~~~~~  237 (450)
                           |+++|++++ ++      ++++|++++|+  +|.+.+.+   +|+++|+++++++++||+|.  ..   ......
T Consensus       107 ~~~~~d~~~l~~~i-~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~  183 (333)
T PRK10534        107 ADGTLPLDKVAAKI-KPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE  183 (333)
T ss_pred             CCCCCCHHHHHHhh-cccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH
Confidence                 799999988 55      68999999765  59998765   55678899999999999862  11   111111


Q ss_pred             --CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCch--HHHHHHHHccCCcHHHHHHHHHHHH
Q 013079          238 --LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN--PKVAFELSERIPHLGLRMKEHCHRA  313 (450)
Q Consensus       238 --~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~--~~~a~~~~~~~~~l~~~~~~~~~~~  313 (450)
                        ...|.++.|+||.++++   +|||+++++++++.+...+.    ..+....  ...+..+...++...+++++..+++
T Consensus       184 ~~~~~~~~~~s~SK~~~~~---~G~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~r  256 (333)
T PRK10534        184 ITQYCDSFTICLSKGLGTP---VGSLLVGNRDYIKRARRWRK----MTGGGMRQAGILAAAGLYALKHNVARLQEDHDNA  256 (333)
T ss_pred             HHhcCCEEEEEeEcCCCCc---ccceEEcCHHHHHHHHHHHH----HhCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence              12466667899999865   54578899999998887665    2222211  1212222222333334555556678


Q ss_pred             HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          314 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       314 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      +++.+.|+++++++..|                    .++++++.+++. ....+.+.|..
T Consensus       257 ~~l~~~L~~~g~~~~~~--------------------~~nfv~~~~~~~-~~~~~~~~l~~  296 (333)
T PRK10534        257 AWLAEQLREAGADVMRQ--------------------DTNMLFVRVGEE-QAAALGEYMRE  296 (333)
T ss_pred             HHHHHHHHhCCCccCCC--------------------CceEEEEECCch-hHHHHHHHHHH
Confidence            89999999887654322                    255888888742 24566666664

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.90  E-value=3.1e-21  Score=195.06  Aligned_cols=287  Identities=17%  Similarity=0.225  Sum_probs=194.5

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc---------CC-CEEEEeCCCchhHHHHHHHh-----
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS---------SG-GHVVAARTLYGGTHALLTHF-----  161 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~---------~g-d~Vi~~~~~y~~~~~~~~~~-----  161 (450)
                      ..+...+++++|+++.+.+.+++++|   |++|+..+++.+..         +| ++|++....|++....+...     
T Consensus        81 ~~~~~~~l~~~l~~~~~~~~~~~~~S---Gs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~  157 (401)
T PRK00854         81 RNDQLAPLYEELAALTGSHKVLPMNS---GAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPD  157 (401)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCcc
Confidence            35788999999999999889999999   99999999987742         23 67888888888754332211     


Q ss_pred             ----CCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          162 ----FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       162 ----~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                          +.. ....+..++..|++++++++ .+++++|++++|+||+|.+.|    +++|.++|++||+++|+||+|+++..
T Consensus       158 ~~~~~~~-~~~~~~~~~~~d~~~le~~i-~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~  235 (401)
T PRK00854        158 ARGGFGP-FTPGFRVVPFGDAEALEAAI-TPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGR  235 (401)
T ss_pred             ccccCCC-CCCCeEEeCCCCHHHHHHHh-CCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence                111 12345667777999999999 789999999999999999986    99999999999999999999965644


Q ss_pred             Cc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH
Q 013079          234 SP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM  306 (450)
Q Consensus       234 ~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~  306 (450)
                      ..       .....|+++.  +|++++..+++ |++++++++++.+..... .....++.+.+.++...+..++. ....
T Consensus       236 ~g~~~~~~~~g~~~D~~~~--~K~l~gg~~~i-g~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aa~~a~L~~l~~-~~~~  310 (401)
T PRK00854        236 TGKLLAEEHEGIEADVTLI--GKALSGGFYPV-SAVLSNSEVLGVLKPGQH-GSTFGGNPLACAVARAALKVLTE-EGMI  310 (401)
T ss_pred             CchHhHHhhcCCCCCEEEe--cccccCCccCe-EEEEEcHHHHhcccCCCC-CCCCCcCHHHHHHHHHHHHHHHH-cCHH
Confidence            32       1234688874  69998655787 899999888877643222 11122222332233223222211 1144


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhcccccccccccc
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSL  385 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~  385 (450)
                      ++.+++.+++.+.|++++....  .               ...+.|.++.+.+. .......|.+.|...   | +.++.
T Consensus       311 ~~~~~~~~~l~~~L~~~~~~~~--~---------------~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~---G-V~v~~  369 (401)
T PRK00854        311 ENAAEMGAYFLEGLRSIRSNIV--R---------------EVRGRGLMLAVELEPEAGGARQYCEALKER---G-LLAKD  369 (401)
T ss_pred             HHHHHHHHHHHHHHHhhccCce--E---------------EEeccceEEEEEEecCchhHHHHHHHHHHC---C-eEEec
Confidence            5667788888888887643211  0               11156778888774 323456777777642   3 22210


Q ss_pred             ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       386 G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                                 ...+.|||++. ...+++.++.+.++|+++
T Consensus       370 ---------------------------~~~~~lR~~p~-~~~t~e~i~~~i~~l~~~  398 (401)
T PRK00854        370 ---------------------------THDHTIRLAPP-LVITREQVDWALEQIAKV  398 (401)
T ss_pred             ---------------------------CCCCEEEEeCC-cccCHHHHHHHHHHHHHH
Confidence                                       01368999988 766676677666666554

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.90  E-value=2.6e-21  Score=196.53  Aligned_cols=283  Identities=18%  Similarity=0.200  Sum_probs=177.7

Q ss_pred             cccCccccCCH-HHHHHhhcCCC--CCCCCCccccCCCChhHHH-HHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHh
Q 013079           63 EASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        63 ~~att~~~~~~-~~~~~~~~~~~--~n~~~~~~y~r~~~~~~~~-l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l  137 (450)
                      ..+.+++.+++ +++...+...+  +++.+.|..+......+++ +++.+++++|.+.. ++++|   |++|+..++.++
T Consensus        31 ~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~s---gt~al~~~l~~l  107 (416)
T PRK00011         31 IASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHS---GSQANAAVYFAL  107 (416)
T ss_pred             ecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCC---chHHHHHHHHHh
Confidence            34444444443 55555443333  4444444333222223333 45589999998765 55567   899999999999


Q ss_pred             ccCCCEEEEeCCCchhHHHHHHH-hCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH
Q 013079          138 CSSGGHVVAARTLYGGTHALLTH-FFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE  210 (450)
Q Consensus       138 ~~~gd~Vi~~~~~y~~~~~~~~~-~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~  210 (450)
                      +++||+|+++.++|.++...... .... .|.++.+++.+      |++++++++...++++|++..++  +|...|+++
T Consensus       108 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~~~~~~  184 (416)
T PRK00011        108 LKPGDTILGMDLAHGGHLTHGSPVNFSG-KLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRPIDFKR  184 (416)
T ss_pred             cCCCCEEEEeccccCCcccccccccccc-ceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCccCHHH
Confidence            99999999999999865432211 1111 35666666542      79999999833479999886544  456789999


Q ss_pred             HHHHHHhcCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhcc
Q 013079          211 LSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLL  283 (450)
Q Consensus       211 I~~la~~~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~  283 (450)
                      |.++|+++|+++|+|++| .+..     ..+.. ++|+++.|+||++++  .+ ||+++.+ +++.+.+........ ..
T Consensus       185 I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~~~S~~K~l~g--~~-gg~i~~~~~~~~~~l~~~~~~~~-~~  259 (416)
T PRK00011        185 FREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVVTTTTHKTLRG--PR-GGLILTNDEELAKKINSAVFPGI-QG  259 (416)
T ss_pred             HHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEEEecCCcCCCC--CC-ceEEEeCCHHHHHHHHHHhCccc-cC
Confidence            999999999999999997 3221     12233 689999999998843  33 4888875 688888765543211 11


Q ss_pred             CCCchHHHHH-HHH-cc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          284 GPTMNPKVAF-ELS-ER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       284 g~~~~~~~a~-~~~-~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      .+.....++. .+. .. .+.+..+.+++.++++++.+.|++.++++. +.  .               ..++++++.++
T Consensus       260 ~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~--~---------------~~~~~~~i~~~  321 (416)
T PRK00011        260 GPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVV-SG--G---------------TDNHLVLVDLR  321 (416)
T ss_pred             CccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeee-ec--C---------------CCCeEEEEeCc
Confidence            1111122221 111 11 123566778889999999999998876543 21  0               12348888885


Q ss_pred             CHH-HHHHHHHHhhc
Q 013079          361 TEE-KANRLMNYLQN  374 (450)
Q Consensus       361 ~~~-~~~~~~~~l~~  374 (450)
                      +.. ....+.+.|..
T Consensus       322 ~~~~~~~~~~~~L~~  336 (416)
T PRK00011        322 SKGLTGKEAEAALEE  336 (416)
T ss_pred             ccCCCHHHHHHHHHH
Confidence            221 23456666654

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.90  E-value=3.2e-21  Score=196.44  Aligned_cols=225  Identities=16%  Similarity=0.117  Sum_probs=159.6

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ..|+  ..+...+||+.++++++.+.+++|+|   |++|+.+++.+++++|| |++++|.|..+...+.     ..|.++
T Consensus        72 ~~Y~--~~~g~~~Lreaia~~~~~~~vv~t~g---gt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~-----~~G~~~  140 (460)
T PRK13238         72 EAYA--GSRSYYRLEDAVKDIFGYPYTIPTHQ---GRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIE-----LNGATA  140 (460)
T ss_pred             cccC--CCCCHHHHHHHHHHHhCCCcEEECCC---HHHHHHHHHHHhCCCCC-EEccCCcccchHHHHH-----HcCCEE
Confidence            3455  35678899999999999999999999   99999999999999999 9999999988877664     356666


Q ss_pred             EEeCC---------------CCHHHHHHhhhc----CCceEEEEecCCCCcc-cccC---HHHHHHHHHhcCCEEEEeCC
Q 013079          171 TFVDI---------------SDHEMVNSAIVQ----GRTKVLYFESISNPTL-AVAN---IPELSRLAHDKGVTVVVDNT  227 (450)
Q Consensus       171 ~~v~~---------------~d~~~l~~ai~~----~~t~lv~i~~~~NptG-~v~~---l~~I~~la~~~gi~livD~~  227 (450)
                      ++++.               .|+++|++++ +    ++|++|++++|+||+| .+.+   +++|.++|++||+++|+|++
T Consensus       141 v~v~~~~~~~~~~~~~f~g~id~e~Le~~i-~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa  219 (460)
T PRK13238        141 VDLVIDEALDTGSRHPFKGNFDLEKLEALI-EEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAA  219 (460)
T ss_pred             EEEeccccccccccccccCCcCHHHHHHHH-hhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECc
Confidence            66653               3789999998 5    4799999999999998 6654   67999999999999999997


Q ss_pred             C-C-CCCC--------CccC---------CCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHh---hhhhhccC
Q 013079          228 F-S-PLVL--------SPAR---------LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLH---QGALMLLG  284 (450)
Q Consensus       228 ~-~-~~~~--------~~~~---------~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~---~~~~~~~g  284 (450)
                      + . ...+        ....         -..|+++.|.+|.+.++   +||+++.+ +++++.++...   .+.....|
T Consensus       220 ~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~---~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g  296 (460)
T PRK13238        220 RFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVN---IGGLLCFRDEDLFTECRTLCILYEGFPTYGG  296 (460)
T ss_pred             chhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCc---ceeEEEcChHHHHHHhhhcccccCCcccccC
Confidence            6 2 1111        1111         13789999999976654   36888877 57888776553   11212223


Q ss_pred             CCchHHHHHH-HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013079          285 PTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG  331 (450)
Q Consensus       285 ~~~~~~~a~~-~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~  331 (450)
                      .....+.|.+ .+.... -....+...+++++|.+.|++.|+.+..|.
T Consensus       297 ~~~~~~~Ala~~l~e~~-~~~~~~~~~~~~~~l~~~L~~~G~~~~~p~  343 (460)
T PRK13238        297 LAGRDMEALAVGLYEGM-DEDYLAYRIGQVEYLGEGLEEAGVPIQTPA  343 (460)
T ss_pred             cHHHHHHHHHhhHHHhh-ChHHHHHHHHHHHHHHHHHHHCCCCeEccC
Confidence            2322122222 222110 112233334467899999999888776664

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.89  E-value=2.3e-21  Score=195.83  Aligned_cols=288  Identities=16%  Similarity=0.178  Sum_probs=190.5

Q ss_pred             CCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCC------C
Q 013079           95 RHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFP------R  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~------~  164 (450)
                      ++.++...++.+.++++++.   +.++||+|   |++|+..+++.+..+| ++|+..++.|++..........      .
T Consensus        81 ~~~~~~~~~la~~l~~~~~~~~~~~v~~~~s---gsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~  157 (398)
T PRK03244         81 LFATEPQIALAERLVELLGAPEGGRVFFCNS---GAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAP  157 (398)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEEeCc---hHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccC
Confidence            44566778999999999874   47899999   9999999998766565 4778888899877433221100      0


Q ss_pred             --ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC-----
Q 013079          165 --ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-----  233 (450)
Q Consensus       165 --~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-----  233 (450)
                        ..+..+..++..|++++++++ .+++++|++++++||+|.+.|    +++|.++|+++|+++|+||+|+++..     
T Consensus       158 ~~~~~~~~~~~~~~d~~~l~~~~-~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~  236 (398)
T PRK03244        158 FEPLPGGVEHVPYGDVDALAAAV-DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF  236 (398)
T ss_pred             CCCCCCCceEeCCCCHHHHHHhh-cCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH
Confidence              012345666667999999988 778999999999999999987    88999999999999999999955431     


Q ss_pred             --CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079          234 --SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       234 --~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                        .......|++  +++|.++ +|.|+ |+++.++++++.+..... ..+..++.+.+.++...+..+.. ....++..+
T Consensus       237 ~~~~~~~~pDi~--t~sK~l~-~G~~i-g~~~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~~-~~~~~~~~~  310 (398)
T PRK03244        237 AHQHDGVTPDVV--TLAKGLG-GGLPI-GACLAFGPAADLLTPGLH-GSTFGGNPVACAAALAVLDTIAS-EGLLENAER  310 (398)
T ss_pred             hhhhhCCCCCEE--EEchhhh-CCccc-EEEEEcHHHHhhccCCCC-cCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence              1122346766  5789999 68998 888888888776643221 11233334444444333332221 123455566


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      +.+++.+.|++++..+.  .               ...|.|.+++++++.. .+..+.+.+..   .| +.++..     
T Consensus       311 ~~~~l~~~L~~~~~~~~--~---------------~v~g~g~~~~i~~~~~-~~~~~~~~l~~---~G-v~~~~~-----  363 (398)
T PRK03244        311 LGEQLRAGIEALGHPLV--D---------------HVRGRGLLLGIVLTAP-VAKAVEAAARE---AG-FLVNAV-----  363 (398)
T ss_pred             HHHHHHHHHHhcCCCce--e---------------eEeeccEEEEEEEecc-HHHHHHHHHHH---CC-eEEeec-----
Confidence            77888888887532110  0               1125688999999643 35667777664   23 222110     


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                            ..+.||||+. ...++++++.+.++|+++
T Consensus       364 ----------------------~~~~iR~~p~-~~~t~~~i~~~~~~l~~~  391 (398)
T PRK03244        364 ----------------------APDVIRLAPP-LIITDAQVDAFVAALPAI  391 (398)
T ss_pred             ----------------------CCCEEEEECC-CcCCHHHHHHHHHHHHHH
Confidence                                  1367999988 644455555555555544

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.89  E-value=1.7e-20  Score=187.81  Aligned_cols=306  Identities=17%  Similarity=0.198  Sum_probs=202.6

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .|.+.+|++++|+++|.+.+++|+|   ||+|+.+++.++ +++||+|++++++|.++...+.     ..|.++++++.+
T Consensus        32 g~~~~~le~~la~~~g~~~~v~~~s---gt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~-----~~G~~~v~vd~~  103 (379)
T PRK11658         32 GPKNQALEQAFCQLTGNQHAIAVSS---ATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIV-----LLGATPVMVDVD  103 (379)
T ss_pred             CHhHHHHHHHHHHHhCCCeEEEECC---HHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHH-----HcCCEEEEEecC
Confidence            5789999999999999999999999   999999999998 7899999999999999877664     368889888763


Q ss_pred             ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCC---ccCCCCeEEEeC
Q 013079          177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLS---PARLGADVVVHS  246 (450)
Q Consensus       177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~---~~~~g~di~~~S  246 (450)
                            |++++++++ +++|++|+   |+|++|...|+++|.++|+++|+++|+|++|. +..+.   ....|.++++++
T Consensus       104 ~~~~~~d~~~l~~~i-~~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~  179 (379)
T PRK11658        104 RDTLMVTPEAIEAAI-TPRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFH  179 (379)
T ss_pred             CCcCCcCHHHHHHhc-ccCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCC
Confidence                  789999999 78899987   56789999999999999999999999999983 33222   234466777777


Q ss_pred             CCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhh------------------ccC--CCchHHHHHHHHccCCcHHHH
Q 013079          247 ISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------------------LLG--PTMNPKVAFELSERIPHLGLR  305 (450)
Q Consensus       247 ~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------------------~~g--~~~~~~~a~~~~~~~~~l~~~  305 (450)
                      .+|.+.+ | . ||+++. ++++.++++..+.+...                  ..|  ..+....|++.+..++.+++.
T Consensus       180 ~~K~l~~-g-~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~  256 (379)
T PRK11658        180 AIKNITC-A-E-GGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEAL  256 (379)
T ss_pred             CCCcCcc-c-C-ceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHH
Confidence            7787754 2 2 688775 47788777654421100                  011  123444555555556667777


Q ss_pred             HHHHHHHHHHHHHHHHhCCCe-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHhhcccccccc
Q 013079          306 MKEHCHRALIFARRMKKLGLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFM  381 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~i  381 (450)
                      .++.+++++++.+.|++.+.. +..|....  .            ..-.++.|.++.   ......+++.|...   | |
T Consensus       257 ~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~r~~~~~~L~~~---g-I  318 (379)
T PRK11658        257 NARRREIAARYLQALADLPFQPLSLPAWPH--Q------------HAWHLFIIRVDEERCGISRDALMEALKER---G-I  318 (379)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccCcCCCCCC--c------------eeEEEEEEEECCccccCCHHHHHHHHHHC---C-C
Confidence            777788888888888876542 22222110  0            011245555542   11356777777752   2 3


Q ss_pred             ccccccccccccccccc---cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          382 AVSLGYYETLMSCSGSS---TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       382 ~vs~G~~~s~~~~~~~~---~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .+..... .+-..|...   ....++..+..    ....|-+-+. ..-+++.++.+.+++.++
T Consensus       319 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~----~~~~l~lP~~-~~l~~~~~~~i~~~i~~~  376 (379)
T PRK11658        319 GTGLHFR-AAHTQKYYRERFPTLSLPNTEWN----SERICSLPLF-PDMTDADVDRVITALQQI  376 (379)
T ss_pred             CCcccCc-CcccChhhhccCCCCCChHHHHH----HhCeEEccCC-CCCCHHHHHHHHHHHHHH
Confidence            3222110 011111100   01122332222    2466777777 666677777777777764

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.89  E-value=7.8e-22  Score=195.29  Aligned_cols=281  Identities=14%  Similarity=0.089  Sum_probs=189.8

Q ss_pred             hcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhcc------------CC--
Q 013079           80 FAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCS------------SG--  141 (450)
Q Consensus        80 ~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~------------~g--  141 (450)
                      +...+.++...|..+.......+++++.+++++|.+    .++||+|   ||+|+.+++.++..            ++  
T Consensus        19 ~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~g---gt~a~~~al~~~~~~~~~~~~~~~~~~~~~   95 (345)
T cd06450          19 LTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSG---GSESNLLALLAARDRARKRLKAGGGRGIDK   95 (345)
T ss_pred             HHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCC---hhHHHHHHHHHHHHHhhhhhhcccccccCC
Confidence            333344444444444444455666777788888874    5899999   99999999987642            23  


Q ss_pred             CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC------CceEEEEecCCCCcccccCHHH
Q 013079          142 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPE  210 (450)
Q Consensus       142 d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~  210 (450)
                      +.|+++.++|.++...+.     ..|.++..++.+     |+++|++++ ++      ++++|++++++||||.+.|+++
T Consensus        96 ~~v~~~~~~h~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~  169 (345)
T cd06450          96 LVIVCSDQAHVSVEKAAA-----YLDVKVRLVPVDEDGRMDPEALEAAI-DEDKAEGLNPIMVVATAGTTDTGAIDPLEE  169 (345)
T ss_pred             eEEEEcCcchhHHHHHHH-----HHhcCeEEeeeCCCCCcCHHHHHHHH-HHHHHCCCCcEEEEEecccCCCCCCCCHHH
Confidence            378888999998877664     246677776643     899999998 55      7889999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeCCCCCCC--CCcc-----C-CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhc
Q 013079          211 LSRLAHDKGVTVVVDNTFSPLV--LSPA-----R-LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML  282 (450)
Q Consensus       211 I~~la~~~gi~livD~~~~~~~--~~~~-----~-~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~  282 (450)
                      |+++|+++|+++|+|++|+...  ....     . .++|+++.|+||+++++. ++ |+++.+                 
T Consensus       170 i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~-g~-g~~~~~-----------------  230 (345)
T cd06450         170 IADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL-GC-SAVLVR-----------------  230 (345)
T ss_pred             HHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc-ch-HHHHHH-----------------
Confidence            9999999999999999983332  1111     1 268999999999876442 23 665433                 


Q ss_pred             cCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          283 LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       283 ~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                            ....+.++.  ....+.++.++..++++++.+.|++++. .+..+.                   .++++.|.+
T Consensus       231 ------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~iv~f~~  285 (345)
T cd06450         231 ------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP-------------------NLSLVCFRL  285 (345)
T ss_pred             ------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------------------ceeEEEEEE
Confidence                  111111111  2233566777778899999999988753 443221                   245888888


Q ss_pred             CC----HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHHHH
Q 013079          360 ET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQ  434 (450)
Q Consensus       360 ~~----~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~  434 (450)
                      +.    ......+.+.|...   |.+.++ +          ..            .+ .++.+|+|++ .. ++.++++.
T Consensus       286 ~~~~~~~~~~~~i~~~L~~~---g~~~~~-~----------~~------------~~-~~~~lRis~~-~~~~t~~di~~  337 (345)
T cd06450         286 KPSVKLDELNYDLSDRLNER---GGWHVP-A----------TT------------LG-GPNVLRFVVT-NPLTTRDDADA  337 (345)
T ss_pred             CCcchhhHHHHHHHHHHHhc---CCEEEE-e----------eE------------EC-CeEEEEEEec-CCCCCHHHHHH
Confidence            75    23355677777542   111111 0          00            00 1468999999 65 58888999


Q ss_pred             HHHHHHH
Q 013079          435 FEKALSR  441 (450)
Q Consensus       435 l~~al~~  441 (450)
                      |.++|.+
T Consensus       338 l~~~l~~  344 (345)
T cd06450         338 LLEDIER  344 (345)
T ss_pred             HHHHHHh
Confidence            9888865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.89  E-value=9e-22  Score=198.93  Aligned_cols=245  Identities=21%  Similarity=0.234  Sum_probs=181.5

Q ss_pred             cCccccCC-HHHHHHhhcCCCCCCCCCccc--cCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCC
Q 013079           65 SATFTVME-PETMRRMFAGELGPDRDFFIY--SRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSG  141 (450)
Q Consensus        65 att~~~~~-~~~~~~~~~~~~~n~~~~~~y--~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~g  141 (450)
                      +.++..++ .+++.++++. ++|..  |.+  ++ .....+.+++.+|+++|++.++++++   |+.|+++++.. +.+|
T Consensus        89 g~s~l~~~vieAv~~~~~~-y~~l~--~~l~~g~-~g~r~~~le~~lA~l~gae~alvv~s---g~aAi~l~l~~-l~~G  160 (454)
T TIGR00474        89 GRAPLAEEAIEAVTDAARG-YSNLE--YDLETGK-RGSRYSHVEGLLCELTGAEDALVVNN---NAAAVLLALNT-LAKG  160 (454)
T ss_pred             CCCCCCHHHHHHHHHHHhc-ccchh--ccccccc-cchHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHHHH-hCCc
Confidence            33343334 4777776664 34432  223  33 23557899999999999999999999   99999988854 6889


Q ss_pred             CEEEEeCCCc---hhHHHHHHHhCCCccCeeEEEeCC---CCHHHHHHhhhcCCceEEEEecCCCCc--c--cccCHHHH
Q 013079          142 GHVVAARTLY---GGTHALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFESISNPT--L--AVANIPEL  211 (450)
Q Consensus       142 d~Vi~~~~~y---~~~~~~~~~~~~~~~g~~v~~v~~---~d~~~l~~ai~~~~t~lv~i~~~~Npt--G--~v~~l~~I  211 (450)
                      |+||+++.+|   ++..... ....+ .|+++.+++.   .+++++++++ +++|++|++++++|++  |  .+.|+++|
T Consensus       161 deVIvs~~e~v~~ggs~~i~-~~~~~-~G~~~~~v~~~~~~~l~dle~aI-~~~T~lv~~~h~sN~~~~G~~~~~dl~~I  237 (454)
T TIGR00474       161 KEVIVSRGELVEIGGSFRIP-DVMEQ-SGAKLVEVGTTNRTHLKDYEDAI-TENTALLLKVHTSNYRIVGFTEEVSIAEL  237 (454)
T ss_pred             CEEEECCChhhhhcchhhHH-HHHHH-cCCEEEEeCCCCCCCHHHHHHhc-CcCCEEEEEEccCcccccCCCCCCCHHHH
Confidence            9999998774   3333332 23333 7999999876   4789999999 8899999999999985  5  57899999


Q ss_pred             HHHHHhcCCEEEEeCCCCCC-------------CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH----
Q 013079          212 SRLAHDKGVTVVVDNTFSPL-------------VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD----  274 (450)
Q Consensus       212 ~~la~~~gi~livD~~~~~~-------------~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~----  274 (450)
                      +++||++|+++++|++.+-+             ..++.+.|+|++++|++|++++|.   +|++++++++++.+..    
T Consensus       238 ~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~---~G~i~g~~~~i~~l~~~~l~  314 (454)
T TIGR00474       238 VALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ---AGIIVGKKELIERLKKNPLT  314 (454)
T ss_pred             HHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe---EEEEEECHHHHHhhhhchhH
Confidence            99999999999999874211             234566799999999999998874   6999998887765421    


Q ss_pred             --Hhh------hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          275 --LHQ------GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       275 --~~~------~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                        .+-      ......+..+.+..++.....++.+..+++++.++++.++++|++.
T Consensus       315 r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~  371 (454)
T TIGR00474       315 RALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAA  371 (454)
T ss_pred             HHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhh
Confidence              110      0111334445556667777778888899999999999999999874

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.89  E-value=3.3e-20  Score=182.09  Aligned_cols=287  Identities=19%  Similarity=0.239  Sum_probs=213.4

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+...+||+.||+++|.+.+++++|   |-.||..++.++++++|.|+.....|-+....++     +.+.++......
T Consensus        82 ~~~~h~~LE~~lA~f~g~e~al~f~S---Gy~AN~~~i~~l~~~~dli~~D~lnHASiidG~r-----ls~a~~~~f~Hn  153 (388)
T COG0156          82 TSDLHVELEEELADFLGAEAALLFSS---GFVANLGLLSALLKKGDLIFSDELNHASIIDGIR-----LSRAEVRRFKHN  153 (388)
T ss_pred             CcHHHHHHHHHHHHHhCCCcEEEEcc---cchhHHHHHHHhcCCCcEEEEechhhhhHHHHHH-----hCCCcEEEecCC
Confidence            46788999999999999999999999   9999999999999999999988888888877775     356677777888


Q ss_pred             CHHHHHHhhhcC-----CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCC-C---------ccCCCC
Q 013079          177 DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL-S---------PARLGA  240 (450)
Q Consensus       177 d~~~l~~ai~~~-----~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~-~---------~~~~g~  240 (450)
                      |+++|++.+++.     +.++|+++.+.+..|.+.|+++|++++++|+++++|||++ .++.- .         ...-.+
T Consensus       154 D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~v  233 (388)
T COG0156         154 DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEV  233 (388)
T ss_pred             CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccc
Confidence            999999998431     2588999999999999999999999999999999999998 22221 1         111235


Q ss_pred             eEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH---HHHccCCcHHHHHHHHHHHHHHHH
Q 013079          241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF---ELSERIPHLGLRMKEHCHRALIFA  317 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~---~~~~~~~~l~~~~~~~~~~~~~l~  317 (450)
                      |++++|++|.+|.-    ||++.++..+++.+.....+.  .....+++..+.   .+++.++....+.+++.++..++.
T Consensus       234 di~~gTlsKAlGs~----Gg~v~g~~~~~d~L~~~ar~~--ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~  307 (388)
T COG0156         234 DIIVGTLGKALGSS----GGYIAGSAALIDYLRNRARPF--IFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFR  307 (388)
T ss_pred             eEEEEEchhhhccc----CceeeCcHHHHHHHHHhCCce--eccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            89999999999954    599999999999887764433  233333343332   233344445566777777777777


Q ss_pred             HHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccccc
Q 013079          318 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS  397 (450)
Q Consensus       318 ~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~  397 (450)
                      ..++..++.+. +.                   ..+++.+.+.+...+..+-+.|...   | +.++      .+.+|..
T Consensus       308 ~~~~~~~~~~~-~s-------------------~s~I~pv~~gd~~~a~~~s~~l~~~---G-i~v~------~i~~PTV  357 (388)
T COG0156         308 SLLKALGLVLL-PS-------------------ESPIIPVILGDEERALEASRALLEE---G-IYVS------AIRPPTV  357 (388)
T ss_pred             HHHHhcCCccC-CC-------------------CCCeeeeEeCCHHHHHHHHHHHHHC---C-eeEe------eecCCCC
Confidence            66665554321 11                   2448889998777777777777652   2 3322      2333332


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          398 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       398 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .              .....||+|+. ...+++.|+.+.++|.++
T Consensus       358 p--------------~gtarlRi~lt-a~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         358 P--------------KGTARLRITLT-AAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             C--------------CCcceEEEEec-CCCCHHHHHHHHHHHHhh
Confidence            2              11356999999 999999999999998764

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.89  E-value=4.1e-20  Score=184.38  Aligned_cols=309  Identities=17%  Similarity=0.207  Sum_probs=203.1

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .+.++++++.++++.|.+.+++|+|   ||+|+++++.++ +++||+|++++++|.++...+.     ..|.++++++.+
T Consensus        30 g~~~~~~e~~la~~~g~~~~v~~~s---gt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~-----~~G~~~v~vd~d  101 (376)
T TIGR02379        30 GPFSRRCETWLENRTGTKKALLTPS---CTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV-----LRGAKIVFVDIR  101 (376)
T ss_pred             cHHHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEecC
Confidence            5779999999999999999999999   999999999887 7899999999999999887764     368888888764


Q ss_pred             ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCC--CeEEEeCC
Q 013079          177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSI  247 (450)
Q Consensus       177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g--~di~~~S~  247 (450)
                            |++++++++ +++|++|+   |+|++|...|+++|.++|+++|+++|+|++|+... ++....|  .|+.++|+
T Consensus       102 ~~~~~~d~~~le~~i-~~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf  177 (376)
T TIGR02379       102 PDTMNIDETLIESAI-THRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSF  177 (376)
T ss_pred             CCcCCCCHHHHHHhc-CcCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeC
Confidence                  788999999 78899986   67889999999999999999999999999984332 3333333  36777776


Q ss_pred             C--CccccCccceEEEEE-cCHHHHHHHHHHhhhhhh---------------ccC--CCchHHHHHHHHccCCcHHHHHH
Q 013079          248 S--KFISGGADIIAGAVC-GPANLVNSMMDLHQGALM---------------LLG--PTMNPKVAFELSERIPHLGLRMK  307 (450)
Q Consensus       248 s--K~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~---------------~~g--~~~~~~~a~~~~~~~~~l~~~~~  307 (450)
                      +  |.+.. |.+ ||+++ .++++.++++..+.+...               ..|  ..+....|+..+..++.+++..+
T Consensus       178 ~~~K~l~~-g~~-gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~  255 (376)
T TIGR02379       178 HETKNYTS-GGE-GGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQ  255 (376)
T ss_pred             CCCCcCcc-cCC-ceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHH
Confidence            4  55653 334 47765 457888888766542210               012  12334445555556777777777


Q ss_pred             HHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc
Q 013079          308 EHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL  385 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~  385 (450)
                      +.++.++++.+.|..+..  .+..|..+....+            .-.++++.++......++++.|...   | |....
T Consensus       256 ~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~r~~l~~~L~~~---g-I~~~~  319 (376)
T TIGR02379       256 DRLATWQLYQDALKPLEEKGIIELPSIPNGCQH------------NAHMFYIKLKDEDDRNELIKYLKEQ---E-IMAVF  319 (376)
T ss_pred             HHHHHHHHHHHHhccCCcCCeeeCCCCCCCCee------------eeEEEEEEECCcCCHHHHHHHHHHC---C-CCccc
Confidence            777777888888876532  1223332211110            0125566676322356778877753   2 44332


Q ss_pred             cccccccccccccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          386 GYYETLMSCSGSST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       386 G~~~s~~~~~~~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      +.. .+-..|.-..    ....+..+.    +....|.+=+. ..-+++.++.+.+++.++
T Consensus       320 ~~~-p~~~~~~~~~~~~~~~~~p~~~~----~~~~~l~LP~~-~~l~~~~~~~i~~~i~~~  374 (376)
T TIGR02379       320 HYV-PLHSSPAGRYFGRFHGEDIYTTK----ESERLVRLPLY-YGLSKEDQARVIQTICDY  374 (376)
T ss_pred             cCc-CCCcchhHHhhCCCCCCChHHHH----HHhceEEccCC-CCCCHHHHHHHHHHHHHH
Confidence            211 1111110000    011122222    12466777777 666677777777777653

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.89  E-value=5.3e-21  Score=192.83  Aligned_cols=286  Identities=13%  Similarity=0.171  Sum_probs=190.4

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc---------CC-CEEEEeCCCchhHHHHHHHhCC---
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS---------SG-GHVVAARTLYGGTHALLTHFFP---  163 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~---------~g-d~Vi~~~~~y~~~~~~~~~~~~---  163 (450)
                      .++...+++++|+++.+.+.++|++|   |++|+..+++.+..         +| ++||+....|++..........   
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~S---GseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~  156 (396)
T PRK04073         80 HSDQLGPWYEKVAKLTGKDMVLPMNT---GAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEE  156 (396)
T ss_pred             CCHHHHHHHHHHHhcCCCCeEEEcCC---hHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcc
Confidence            45677889999999998889999999   99999999986531         34 6789888888875432211100   


Q ss_pred             --CccC---eeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          164 --RACN---ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       164 --~~~g---~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                        ...+   ..+..++..|++++++++ ++++++|++++++||+|.+.|    +++|.++|+++|+++|+||+|.++...
T Consensus       157 ~~~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~  235 (396)
T PRK04073        157 YKRGFGPMLPGIKKIPYGDLEALKAAI-TPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRT  235 (396)
T ss_pred             cccCCCCCCCCceEeCCCCHHHHHHhc-ccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcC
Confidence              0000   123456667999999999 788999999999999999976    889999999999999999999655421


Q ss_pred             -------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHH
Q 013079          235 -------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMK  307 (450)
Q Consensus       235 -------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~  307 (450)
                             ......|+++  ++|.+|++|+|+ |++++++++++.+..... ..+..++.+.+.++...+..++. ....+
T Consensus       236 g~~~~~~~~~~~pdi~~--~sK~lg~gg~~i-g~~~~~~~i~~~~~~~~~-~~t~~~~~~~~aaa~aaL~~~~~-~~l~~  310 (396)
T PRK04073        236 GKLFACDWDNVTPDMYI--LGKALGGGVFPI-SCVAANRDILGVFTPGSH-GSTFGGNPLACAVSIAALEVLEE-EKLPE  310 (396)
T ss_pred             cHHHHhhhcCCCCCEEE--ecccccCCCCcc-eEEEEcHHHHhhhcCCCC-CCCCCCCHHHHHHHHHHHHHHHh-cCHHH
Confidence                   1222467665  789999988998 999999988887753222 12233444444444333332211 12234


Q ss_pred             HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccc
Q 013079          308 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      +..++++++.+.|++++.    +.+.             ...+.|.++.++++.  ....+.+.|..   .| +.+.   
T Consensus       311 ~~~~~~~~l~~~L~~l~~----~~i~-------------~~~~~g~~~~~~~~~--~~~~~~~~l~~---~G-v~~~---  364 (396)
T PRK04073        311 RSLELGEYFKEQLKEIDN----PMIK-------------EVRGRGLFIGVELNE--PARPYCEALKE---EG-LLCK---  364 (396)
T ss_pred             HHHHHHHHHHHHHHhhcC----Cccc-------------ceecceEEEEEEecc--hHHHHHHHHHH---CC-eEEe---
Confidence            556677888888887532    1111             111467789998864  24567766654   23 2211   


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                             +                 ..++.|||++. ...+++.++.+.++|+++
T Consensus       365 -------~-----------------~~~~~iRi~p~-l~~t~e~i~~~~~~l~~~  394 (396)
T PRK04073        365 -------E-----------------THETVIRFAPP-LVITKEELDWAFEKIKAV  394 (396)
T ss_pred             -------c-----------------CCCCEEEEECC-cccCHHHHHHHHHHHHHH
Confidence                   0                 01368999987 656666677766666543

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.88  E-value=9.4e-21  Score=190.05  Aligned_cols=286  Identities=15%  Similarity=0.186  Sum_probs=189.5

Q ss_pred             CCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc---c----CCCEEEEeCCCchhHHHHHHHhCCC----
Q 013079           96 HFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC---S----SGGHVVAARTLYGGTHALLTHFFPR----  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~---~----~gd~Vi~~~~~y~~~~~~~~~~~~~----  164 (450)
                      +..+...++++++++++|.+.+++++|   |++|+.++++.+.   .    ++|+|++.++.|+++..........    
T Consensus        66 ~~~~~~~~l~~~la~~~g~~~~~~~~s---g~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~  142 (379)
T TIGR00707        66 YYTEPQEELAEKLVEHSGADRVFFCNS---GAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQ  142 (379)
T ss_pred             cCCHHHHHHHHHHHhhCCCCEEEEeCC---cHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhh
Confidence            457889999999999999999999999   9999999987542   2    3799999999998765443211110    


Q ss_pred             ----ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013079          165 ----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLSP-  235 (450)
Q Consensus       165 ----~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~~-  235 (450)
                          ....++.+++..|++++++.+ ++++++|++++++|++|...    ++++|.++|+++|+++|+||+|.++.... 
T Consensus       143 ~~~~~~~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~  221 (379)
T TIGR00707       143 KGFEPLVPGFSYAPYNDIESLKKAI-DDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK  221 (379)
T ss_pred             ccCCCCCCCceeeCCCCHHHHHHHh-hhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch
Confidence                011233445555899999998 77899999988888888653    38899999999999999999996553321 


Q ss_pred             ------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079          236 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH  309 (450)
Q Consensus       236 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~  309 (450)
                            .....|++  ++||.++ +|+|+ ||+++++++++.+..... .....++.+.+.++..++..++. ....+++
T Consensus       222 ~~~~~~~~~~~d~~--t~sK~~~-~G~ri-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~aa~aaL~~~~~-~~~~~~~  295 (379)
T TIGR00707       222 FFAYEHYGIEPDII--TLAKGLG-GGVPI-GATLAKEEVAEAFTPGDH-GSTFGGNPLACAAALAVLEVIEK-ERLLENV  295 (379)
T ss_pred             hhhHHhcCCCCCEE--EEccccc-CCccc-EEEEEcHHHHhhhcCCCC-CCCCCCCHHHHHHHHHHHHHHHh-hhHHHHH
Confidence                  11234554  5899999 89998 999999888887764322 11122333444444433332221 2344566


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      .++++.+.+.|++.+.......                ..+.|.++++.++..  ...+.+.|...   | +.+..+   
T Consensus       296 ~~~~~~~~~~l~~~~~~~~~~~----------------~~~~g~~~~~~~~~~--~~~~~~~l~~~---G-v~v~~~---  350 (379)
T TIGR00707       296 KEKGDYFKERLEELGKNYPNKE----------------VRGKGLMLGIELEAP--CKDIVKKALEK---G-LLVNCA---  350 (379)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCc----------------cccCceEEEEEecCc--HHHHHHHHHHC---C-cEEeeC---
Confidence            7777888888876533211110                013466889988643  35677766642   2 332211   


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                              ..+.||||+. ...+++.++.+.++|++
T Consensus       351 ------------------------~~~~lRi~~~-~~~t~~~i~~~~~~l~~  377 (379)
T TIGR00707       351 ------------------------GPKVLRFLPP-LIITKEEIDEAVSALEE  377 (379)
T ss_pred             ------------------------CCCEEEEECC-CcCCHHHHHHHHHHHHH
Confidence                                    1367999988 65556666666666654

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.88  E-value=5.1e-21  Score=194.17  Aligned_cols=289  Identities=15%  Similarity=0.199  Sum_probs=191.3

Q ss_pred             CChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCC--------
Q 013079           97 FNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR--------  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~--------  164 (450)
                      ..+...++++.++++++  .+.++|++|   |++|+..+++.+.  .++++|++.++.|++...........        
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~v~~~~s---gsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~  153 (413)
T cd00610          77 YNEPAVELAELLLALTPEGLDKVFFVNS---GTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFG  153 (413)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEcCc---HHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCC
Confidence            46788999999999998  788999999   9999999998763  56899999999999865543221110        


Q ss_pred             ccCeeEEEeCCC-----------CHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCC
Q 013079          165 ACNITTTFVDIS-----------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNT  227 (450)
Q Consensus       165 ~~g~~v~~v~~~-----------d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~  227 (450)
                      ....++..++.+           |+++|++++..  .++++|++++++|++|.+.+    +++|.++|+++|+++|+||+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev  233 (413)
T cd00610         154 PLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEV  233 (413)
T ss_pred             CCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence            012245566665           78899998833  36788999988899999887    99999999999999999999


Q ss_pred             CCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHH--HHHhhhhhhccCCCchHHHHHHHHcc
Q 013079          228 FSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM--MDLHQGALMLLGPTMNPKVAFELSER  298 (450)
Q Consensus       228 ~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l--~~~~~~~~~~~g~~~~~~~a~~~~~~  298 (450)
                      |+++..       +......|++  |++|.+++ |.++ |++++++++++.+  ..... ..+..++.+.+.++...+..
T Consensus       234 ~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-g~~~-g~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~a~~a~l~~  308 (413)
T cd00610         234 QTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGG-GLPL-GAVLGREEIMDAFPAGPGLH-GGTFGGNPLACAAALAVLEV  308 (413)
T ss_pred             ccCCCcCcchhhHhhcCCCCCeE--EEcccccC-cccc-EEEEEcHHHHHhhccCCCCC-CCCCCcCHHHHHHHHHHHHH
Confidence            965421       1112234654  67899997 7998 8888888888876  11111 11122333333333333322


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--------HHHHHHHH
Q 013079          299 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--------EKANRLMN  370 (450)
Q Consensus       299 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--------~~~~~~~~  370 (450)
                      ++. ....++..++.+++.+.|++.......+.               ...+.|.++++.++..        .....+..
T Consensus       309 l~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (413)
T cd00610         309 LEE-EGLLENAAELGEYLRERLRELAEKHPLVG---------------DVRGRGLMIGIELVKDRATKPPDKELAAKIIK  372 (413)
T ss_pred             HHh-ccHHHHHHHHHHHHHHHHHHHHhhCCcEE---------------EeecCceEEEEEEecCCCcCCcchHHHHHHHH
Confidence            221 23445567777788888776432100000               0114678999998742        34566777


Q ss_pred             HhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          371 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       371 ~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      .|...   | +.++.++                           .+.+|+++. ...+++.++.+.++|.+
T Consensus       373 ~l~~~---g-v~v~~~~---------------------------~~~lR~~~~-~~~t~~~i~~~~~~l~~  411 (413)
T cd00610         373 AALER---G-LLLRPSG---------------------------GNVIRLLPP-LIITEEEIDEGLDALDE  411 (413)
T ss_pred             HHHHC---C-eEEeecC---------------------------CCEEEEECC-CcCCHHHHHHHHHHHHH
Confidence            76542   2 3322220                           367999999 77777777777777664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.88  E-value=2.8e-20  Score=186.67  Aligned_cols=306  Identities=18%  Similarity=0.210  Sum_probs=202.5

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .+..+++|+.+|+++|.+.+++++|   |++|+++++.++ +++||+|+++.++|.++...+.     ..|.++++++.+
T Consensus        28 g~~~~~le~~la~~~g~~~~v~~~s---gt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~-----~~G~~~~~~~~~   99 (380)
T TIGR03588        28 GPTVPAFEEALAEYVGAKYAVAFNS---ATSALHIACLALGVGPGDRVWTTPITFVATANCAL-----YCGAKVDFVDID   99 (380)
T ss_pred             ChhHHHHHHHHHHHHCCCeEEEEcC---HHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHH-----HcCCEEEEEecC
Confidence            4678999999999999998899999   999999999998 7899999999999998877664     368889888763


Q ss_pred             ------CHHHHHHhhhc----CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC----e
Q 013079          177 ------DHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA----D  241 (450)
Q Consensus       177 ------d~~~l~~ai~~----~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~----d  241 (450)
                            |++++++++ +    ++|++|++   +|++|...|+++|.++|+++|+++|+|++|. +..++...+|.    |
T Consensus       100 ~~~~~~d~~~l~~~i-~~~~~~~t~~v~~---~~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d  175 (380)
T TIGR03588       100 PDTGNIDEDALEKKL-AAAKGKLPKAIVP---VDFAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYAD  175 (380)
T ss_pred             CCcCCcCHHHHHHHh-hcccCCCceEEEE---eCCCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccc
Confidence                  889999999 6    68998885   4578999999999999999999999999982 22244444455    9


Q ss_pred             EEEeCCC--CccccCccceEEEEE-cCHHHHHHHHHHhhhhhh-------------------ccC--CCchHHHHHHHHc
Q 013079          242 VVVHSIS--KFISGGADIIAGAVC-GPANLVNSMMDLHQGALM-------------------LLG--PTMNPKVAFELSE  297 (450)
Q Consensus       242 i~~~S~s--K~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~-------------------~~g--~~~~~~~a~~~~~  297 (450)
                      +.+.|+|  |+++.+.   ||+++ .++++.++++..+.+...                   ..|  ..++...+.....
T Consensus       176 ~~~~S~~~~K~~~~~~---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~  252 (380)
T TIGR03588       176 ATVFSFHPVKIITTAE---GGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLS  252 (380)
T ss_pred             eEEEecCCCCcccccC---ceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHH
Confidence            9999987  8887542   57665 457777776654331100                   011  1233444444444


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhc
Q 013079          298 RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN  374 (450)
Q Consensus       298 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~  374 (450)
                      .++.++...++.+++++++.+.|.+.+. .+..+.....+              .-.+..+.+..  ......+.+.|..
T Consensus       253 qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~r~~l~~~L~~  318 (380)
T TIGR03588       253 QLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKS--------------AWHLYPILLDQEFGCTRKEVFEALRA  318 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEe--------------EEEEEEEEECCcCCCCHHHHHHHHHH
Confidence            5566677777778888899999987653 21111100000              01133334431  1235667777764


Q ss_pred             cccccccccccccccccccccccc---cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          375 YAQFGFMAVSLGYYETLMSCSGSS---TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       375 ~~~~g~i~vs~G~~~s~~~~~~~~---~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .   | |.+...... +...|...   ....++....    +....|++.++ ..-+++.++.+.+++.++
T Consensus       319 ~---g-I~~~~~~~~-~~~~~~~~~~~~~~~~p~a~~----~~~~~l~lP~~-~~l~~~dv~~i~~~l~~~  379 (380)
T TIGR03588       319 A---G-IGVQVHYIP-VHLQPYYRQGFGDGDLPSAEN----FYLAEISLPLH-PALTLEQQQRVVETLRKV  379 (380)
T ss_pred             C---C-CCcccCCcc-cccChhhhccCCcCCCcHHHH----HHhceEEcCCC-CCCCHHHHHHHHHHHHHh
Confidence            2   2 444433211 10111110   0111222222    22578999999 777778888888887754

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.88  E-value=1.2e-19  Score=181.50  Aligned_cols=309  Identities=14%  Similarity=0.145  Sum_probs=202.1

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .+.++++++.+++++|.+.+++|+|   |++|+++++..+ +++||+|+++.++|.++...+.     ..|.++++++.+
T Consensus        30 ~~~~~~~e~~la~~~g~~~~v~~~s---gt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~-----~~G~~~v~~d~d  101 (375)
T PRK11706         30 GGFTRRCQQWLEQRFGSAKVLLTPS---CTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV-----LRGAKIVFVDIR  101 (375)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECC---HHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHH-----HcCCEEEEEecC
Confidence            4678999999999999999999999   999999988765 6899999999999999988775     368888888754


Q ss_pred             ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCC--CCeEEEeCC
Q 013079          177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARL--GADVVVHSI  247 (450)
Q Consensus       177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~--g~di~~~S~  247 (450)
                            |++++++++ ++++++|++.   |++|...++++|.++|+++|+++|+|++|+... ++....  ..|+.+.|+
T Consensus       102 ~~~~~~d~~~le~~i-~~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf  177 (375)
T PRK11706        102 PDTMNIDETLIEAAI-TPKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSF  177 (375)
T ss_pred             CCcCCcCHHHHHHhc-CCCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeC
Confidence                  789999999 7889999864   579999999999999999999999999983332 222222  257888887


Q ss_pred             C--CccccCccceEEEEEcCHHHHHHHHHHhhhhh---------------hccCC--CchHHHHHHHHccCCcHHHHHHH
Q 013079          248 S--KFISGGADIIAGAVCGPANLVNSMMDLHQGAL---------------MLLGP--TMNPKVAFELSERIPHLGLRMKE  308 (450)
Q Consensus       248 s--K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~---------------~~~g~--~~~~~~a~~~~~~~~~l~~~~~~  308 (450)
                      +  |.++. |.+ |++++.++++.++++..+.+..               ...|.  .+....|+.....++.++...++
T Consensus       178 ~~~K~l~~-g~g-G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~  255 (375)
T PRK11706        178 HETKNYTA-GEG-GALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQR  255 (375)
T ss_pred             CCCccccc-cCC-eEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            7  99975 543 3566777888887766553210               01122  13344455555555666666666


Q ss_pred             HHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079          309 HCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      .+++.+++.+.|..++.  .+..|..+..            ......++++.++......++++.|...+    |.++..
T Consensus       256 R~~~~~~~~~~L~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~r~~l~~~L~~~g----I~~~~~  319 (375)
T PRK11706        256 RLALWQRYYDALAPLAEAGRIELPSIPDD------------CKHNAHMFYIKLRDLEDRSALINFLKEAG----IMAVFH  319 (375)
T ss_pred             HHHHHHHHHHHhcCCCcCCeeecCCCCCC------------CceeeEEEEEEECCcCCHHHHHHHHHHCC----CCcccc
Confidence            77777788888876541  1222321110            00122366677764334567888877533    444433


Q ss_pred             ccccccccccccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          387 YYETLMSCSGSST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       387 ~~~s~~~~~~~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .. .+...+....    ...++..+..    ....|-+-+. ..-+++.++.+.+++.++
T Consensus       320 ~~-p~~~~~~~~~~~~~~~~~p~a~~~----~~~~l~lP~~-~~l~~~~~~~i~~~i~~~  373 (375)
T PRK11706        320 YI-PLHSSPAGERFGRFHGEDRYTTKE----SERLLRLPLF-YNLTDVEQRTVIDTILEF  373 (375)
T ss_pred             CC-ccCcchhhHhcCCCCCCChHHHHH----HhCcEeccCC-CCCCHHHHHHHHHHHHHH
Confidence            21 1111111100    1123333332    2456776666 545566677777776653

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.88  E-value=4.6e-21  Score=174.60  Aligned_cols=311  Identities=19%  Similarity=0.221  Sum_probs=214.2

Q ss_pred             ccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc-C
Q 013079           62 IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS-S  140 (450)
Q Consensus        62 i~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~-~  140 (450)
                      -.+|.|++.|+.+....+.+...    +...||  .+|+..+|++.+|+++|.|..+|++|   ||.+|.++++.-|. +
T Consensus        25 DLRSDTvT~PTdeMr~am~eA~v----gDdVyG--eD~tt~rLE~~vA~l~GKEAgLFv~S---GTmgNllaIm~Hc~~r   95 (384)
T KOG1368|consen   25 DLRSDTVTVPTDEMRRAMAEASV----GDDVYG--EDPTTNRLEQRVAELFGKEAGLFVPS---GTMGNLLAIMVHCHQR   95 (384)
T ss_pred             ccccccccCChHHHHHHHhhccc----Cccccc--CCccHHHHHHHHHHHhCccceeeecc---cccccHHHHHHHhcCC
Confidence            35789998887665555555553    446788  46889999999999999999999999   99999999987764 8


Q ss_pred             CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC-------CceEEEEecCCCCcc-cccC
Q 013079          141 GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-------RTKVLYFESISNPTL-AVAN  207 (450)
Q Consensus       141 gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~-------~t~lv~i~~~~NptG-~v~~  207 (450)
                      |.+||+-+..|--.++.- . ...+.|+.+..+...     |++++++++..+       .|++|++|+-+|.+| .+.|
T Consensus        96 g~eii~gd~~HI~~~E~g-g-~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlP  173 (384)
T KOG1368|consen   96 GSEIIVGDRAHIHRYEQG-G-ISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLP  173 (384)
T ss_pred             CceEEeccchheeehhcc-C-hhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEee
Confidence            899999887664333221 0 111245555554332     899999999423       489999999888777 7777


Q ss_pred             HH---HHHHHHHhcCCEEEEeCCC---C--CCCCCccCC--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh
Q 013079          208 IP---ELSRLAHDKGVTVVVDNTF---S--PLVLSPARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ  277 (450)
Q Consensus       208 l~---~I~~la~~~gi~livD~~~---~--~~~~~~~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~  277 (450)
                      ++   +|.++|+++|+.+|+|.+.   .  ....+..++  -.|-+...+||.+|.|   +|.+++++++++++.+.+|.
T Consensus       174 le~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP---VGSViVG~k~FI~kA~~~RK  250 (384)
T KOG1368|consen  174 LEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP---VGSVIVGSKDFIDKARHFRK  250 (384)
T ss_pred             HHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC---cccEEEccHHHHHHHHHHHH
Confidence            55   7788999999999999873   1  112222222  3688888999999977   67788999999999888777


Q ss_pred             hhhhccCCCchH--HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          278 GALMLLGPTMNP--KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       278 ~~~~~~g~~~~~--~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                          ..|+.+-+  ..|++++-.+.+-...++.-.+++..|++.+...+ +++..|..+                  .++
T Consensus       251 ----alGGGmRQsGvLaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~e------------------tNi  308 (384)
T KOG1368|consen  251 ----ALGGGMRQSGVLAAAALVALDENVPLLRADHKRAKELAEYINTPEEIRVEVPAVE------------------TNI  308 (384)
T ss_pred             ----HhcCchhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccceeeecchhh------------------cce
Confidence                34443332  23333333444433355555677788999998766 477666422                  236


Q ss_pred             EEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          355 LCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       355 ~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      +.+.+. ..-.++.|.+.++.   .|.+.                            |+-....+||++. +.-+++.++
T Consensus       309 v~~~l~q~~~~~~~l~~~~~k---~gi~l----------------------------m~~~s~r~Rivlh-~Qvt~~~ve  356 (384)
T KOG1368|consen  309 VNMVLCQARLTAEELCKFLEK---NGILL----------------------------MGGASRRIRIVLH-HQVTDEDVE  356 (384)
T ss_pred             eeeecccccCCHHHHHHHHHH---CCeEE----------------------------eeccccceEEEEE-EecCHHHHH
Confidence            776665 22236777777765   22111                            1111245999999 877777788


Q ss_pred             HHHHHHH
Q 013079          434 QFEKALS  440 (450)
Q Consensus       434 ~l~~al~  440 (450)
                      .+..++.
T Consensus       357 ~~~~~~~  363 (384)
T KOG1368|consen  357 YVKSVLS  363 (384)
T ss_pred             HHHHHHH
Confidence            8877773

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.88  E-value=9.6e-20  Score=182.85  Aligned_cols=286  Identities=17%  Similarity=0.152  Sum_probs=198.4

Q ss_pred             hhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc--------------cCCCEEEEeCCCchhHHHHHHHhCCC
Q 013079           99 PTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC--------------SSGGHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~--------------~~gd~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      ...++||+.||+++|.+.++++++   |..|+..++.+++              ..++.|+.....|.+....++ +..+
T Consensus       147 ~~h~~LE~~LA~f~g~e~all~sS---Gy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~-ls~~  222 (476)
T PLN02955        147 TYHRLLESSLADLKKKEDCLVCPT---GFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR-LAER  222 (476)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECC---hHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH-hccc
Confidence            567899999999999999999999   9999999998762              345677777778888877774 2222


Q ss_pred             ccCeeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc-------
Q 013079          165 ACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP-------  235 (450)
Q Consensus       165 ~~g~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~-------  235 (450)
                      ..+.++..++.+|+++|++.++.  .+.++|+++.+.++.|.+.|+++|.++|++||+.+++||+++...+.+       
T Consensus       223 ~~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e  302 (476)
T PLN02955        223 QGNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAE  302 (476)
T ss_pred             cCCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHH
Confidence            12577777888899999988832  346788899999999999999999999999999999999984322111       


Q ss_pred             ---cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH-HHHH-HHccCCcHHHHHHHHH
Q 013079          236 ---ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK-VAFE-LSERIPHLGLRMKEHC  310 (450)
Q Consensus       236 ---~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~-~a~~-~~~~~~~l~~~~~~~~  310 (450)
                         ..-.+|++++|++|.+|..|    |++++++++++.++....... +.++.+.+. ++.. ++........+.+++.
T Consensus       303 ~~g~~~di~ii~~TLsKA~G~~G----Gfi~gs~~~~~~l~~~~~~~i-fStalpp~~aaa~laal~l~~~~~~~r~~L~  377 (476)
T PLN02955        303 EFNCEADVDLCVGTLSKAAGCHG----GFIACSKKWKQLIQSRGRSFI-FSTAIPVPMAAAAYAAVVVARKEKWRRKAIW  377 (476)
T ss_pred             HhCCCCCCcEEEEeCccchhccC----ceeecHHHHHHHHHHhCCCCe-ecccccHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence               11257899999999998764    999999988888876544322 222222222 2221 2222222233445556


Q ss_pred             HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccc
Q 013079          311 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      ++.+++.+.   .++.+                       ..+++.+.+.+...+..+.+.|...   | +.++      
T Consensus       378 ~n~~~fr~~---~G~~~-----------------------~sPI~pI~ig~~~~a~~~~~~L~~~---G-i~v~------  421 (476)
T PLN02955        378 ERVKEFKAL---SGVDI-----------------------SSPIISLVVGNQEKALKASRYLLKS---G-FHVM------  421 (476)
T ss_pred             HHHHHHHHh---cCCCC-----------------------CCCEEEEEeCCHHHHHHHHHHHHHC---C-CEEE------
Confidence            666655542   23221                       1348889998877788888888753   3 3333      


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      .+..|...              .....+||++. ...++++++.|.++|.++..
T Consensus       422 ~i~yPtVP--------------~g~~rLRi~ls-A~Ht~edId~lv~~L~~~~~  460 (476)
T PLN02955        422 AIRPPTVP--------------PNSCRLRVTLS-AAHTTEDVKKLITALSSCLD  460 (476)
T ss_pred             EECCCCCC--------------CCCceEEEeeC-CCCCHHHHHHHHHHHHHHHh
Confidence            22334332              11356999999 98888888888888877643

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.87  E-value=5.6e-20  Score=185.97  Aligned_cols=253  Identities=17%  Similarity=0.167  Sum_probs=165.4

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCCCCCCCccccCC--CChhHHHHHH----HHHHHhCCCeEE-EecChHHHHHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRH--FNPTVLNLSR----QMAALEGTEAAY-CTASDKAGMSAISS  132 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~--~~~~~~~l~~----~iA~l~g~~~~~-~tsg~~~gt~ai~~  132 (450)
                      ++..|.+++.|.+ +++...+...|+.   ++.++|.  +++.++++++    .+|+++|.+.++ +++|   |+.|+..
T Consensus        32 ~l~~sen~~~p~v~~a~~~~~~~~~~~---g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~S---G~~A~~~  105 (416)
T PRK13034         32 ELIASENFTSPAVMEAQGSVLTNKYAE---GYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHS---GSQANGA  105 (416)
T ss_pred             eecccccCCCHHHHHHhcchhhcCCCC---CCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCC---cHHHHHH
Confidence            5677888887764 5665555444443   2334443  4789999999    999999999885 5689   9999999


Q ss_pred             HHHHhccCCCEEEEeCCCchhHHH-HHHHhCCCccCe--eEEEeCC------CCHHHHHHhhhcCCceEEEEecCCCCcc
Q 013079          133 VLMQLCSSGGHVVAARTLYGGTHA-LLTHFFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTL  203 (450)
Q Consensus       133 al~~l~~~gd~Vi~~~~~y~~~~~-~~~~~~~~~~g~--~v~~v~~------~d~~~l~~ai~~~~t~lv~i~~~~NptG  203 (450)
                      ++.+++++||+|++.+..|.+... .+.   +...+.  +..+++.      .|++++++.+...++++|+++.+.  +|
T Consensus       106 ~l~al~~~GD~Vl~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~~--~g  180 (416)
T PRK13034        106 VYLALLKPGDTILGMSLSHGGHLTHGAK---VSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFSA--YP  180 (416)
T ss_pred             HHHHhcCCCCEEEEcCccceeeeecCCc---ceeccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCCc--cc
Confidence            999999999999999999876321 110   000111  1123332      488999988844478898876543  57


Q ss_pred             cccCHHHHHHHHHhcCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHh
Q 013079          204 AVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLH  276 (450)
Q Consensus       204 ~v~~l~~I~~la~~~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~  276 (450)
                      ...|+++|.++|+++|+++++|+++ .+..     ..+.. ++|++++|+||+++++.   ||+++++. .+.+.++...
T Consensus       181 ~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~~---GG~v~~~~~~~~~~~~~~~  256 (416)
T PRK13034        181 RELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFP-HAHVVTTTTHKTLRGPR---GGMILTNDEEIAKKINSAV  256 (416)
T ss_pred             cccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCC-CceEEEEeCcccCCCCC---CeEEEECcHHHHHHHHhhc
Confidence            8889999999999999999999996 2221     11222 58999999999996554   57776654 4444444332


Q ss_pred             hhhhhccCCCchHHHHHH--HHccCC-cHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013079          277 QGALMLLGPTMNPKVAFE--LSERIP-HLGLRMKEHCHRALIFARRMKKLGLKVLY  329 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~--~~~~~~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~  329 (450)
                      ... ...+..+...++..  +...++ ...++.++..++.++|++.|++.|+.+..
T Consensus       257 ~~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~  311 (416)
T PRK13034        257 FPG-LQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVS  311 (416)
T ss_pred             CCc-ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEecc
Confidence            211 01112222222211  111221 22344677889999999999988876543

>PRK04311 selenocysteine synthase; Provisional

Probab=99.87  E-value=8.8e-21  Score=192.26  Aligned_cols=240  Identities=21%  Similarity=0.173  Sum_probs=171.7

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCch
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG  152 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~  152 (450)
                      .+++.+++... .|....+..++. .+..+.+++.+|+++|++.++++++   |+.|+++++.+ +.+||+||+++.+|.
T Consensus       103 ~eav~~~~~~~-~~le~~l~~g~~-g~r~~~~e~~lA~l~Gae~a~vv~s---gtaAl~l~l~~-l~~GdeVIvs~~e~~  176 (464)
T PRK04311        103 IEAVTEAARGY-SNLEYDLATGKR-GSRDRALAALLCALTGAEDALVVNN---NAAAVLLALNA-LAAGKEVIVSRGELV  176 (464)
T ss_pred             HHHHHHHHhcc-cccccchhhccc-chHHHHHHHHHHHHhCCCeEEEECC---HHHHHHHHHHH-hCCCCEEEEcchhhh
Confidence            46666666542 232211112333 3557899999999999999999999   99999998865 578999999987654


Q ss_pred             h---HHHHHHHhCCCccCeeEEEeCC---CCHHHHHHhhhcCCceEEEEecCCCC--cc--cccCHHHHHHHHHhcCCEE
Q 013079          153 G---THALLTHFFPRACNITTTFVDI---SDHEMVNSAIVQGRTKVLYFESISNP--TL--AVANIPELSRLAHDKGVTV  222 (450)
Q Consensus       153 ~---~~~~~~~~~~~~~g~~v~~v~~---~d~~~l~~ai~~~~t~lv~i~~~~Np--tG--~v~~l~~I~~la~~~gi~l  222 (450)
                      .   ... +.....+ .|+++.+++.   .+++++++++ +++|++|++++++|+  +|  ...|+++|+++||++|+++
T Consensus       177 ~~ggs~~-i~~~~~~-~G~~l~~v~~~~~t~~~dle~aI-~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~v  253 (464)
T PRK04311        177 EIGGAFR-IPDVMRQ-AGARLVEVGTTNRTHLRDYEQAI-NENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPV  253 (464)
T ss_pred             hcCcchh-hHHHHHH-CCcEEEEECCCCCCCHHHHHHhc-CccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeE
Confidence            2   222 1222333 7999988875   3788999999 889999999999998  34  5689999999999999999


Q ss_pred             EEeCCCCCC-------------CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh-hhhccCCCch
Q 013079          223 VVDNTFSPL-------------VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMN  288 (450)
Q Consensus       223 ivD~~~~~~-------------~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-~~~~~g~~~~  288 (450)
                      ++|+..+.+             ..++.+.|+|++++|++|++|+|.   +|+++++++++++++...-. .....+.++.
T Consensus       254 ivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~---~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~  330 (464)
T PRK04311        254 VYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQ---AGIIVGKKELIARLKKHPLKRALRVDKLTLA  330 (464)
T ss_pred             EEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCc---eEEEEEcHHHHHHHhhchhHHHHhcchHHHH
Confidence            999953211             124455799999999999999874   59999999888877531110 1112244455


Q ss_pred             HHHHHHH--------Hcc---CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          289 PKVAFEL--------SER---IPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       289 ~~~a~~~--------~~~---~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      +..+.+.        ...   ++.+..+++++.++++.+.++|+.+.
T Consensus       331 ~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~  377 (464)
T PRK04311        331 ALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAAL  377 (464)
T ss_pred             HHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhcc
Confidence            5444432        112   23356677888999999999998864

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.87  E-value=6.6e-20  Score=173.97  Aligned_cols=267  Identities=19%  Similarity=0.188  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          101 VLNLSRQMAALEG----------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       101 ~~~l~~~iA~l~g----------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ...+++.+|+++.          ++.+++|+|   +|.|++++...|+.|||..+++.|.|++.-.-+.   -+ .|+++
T Consensus       123 l~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G---~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~---~r-Tgvei  195 (471)
T KOG0256|consen  123 LPSFRQAVAEFMERARGNRVKFDPERVVVTNG---ATSANETLMFCLADPGDAFLVPTPYYPGFDRDLR---WR-TGVEI  195 (471)
T ss_pred             chHHHHHHHHHHHHHhCCCCccCccceEEecc---cchhhHHHHHHhcCCCceeeecCCCCCcccccce---ec-cCceE
Confidence            3456777777653          467899999   9999999999999999999999999999865543   23 68888


Q ss_pred             EEeCCC-------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079          171 TFVDIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-  234 (450)
Q Consensus       171 ~~v~~~-------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-  234 (450)
                      +.|...       +.+++|+++.+     .+++.|+|.+|+||.|++.+   +..+..+|.++|+.+|+||+|..-.++ 
T Consensus       196 vpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~  275 (471)
T KOG0256|consen  196 VPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDK  275 (471)
T ss_pred             EEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCc
Confidence            777543       57888887732     36889999999999999976   557777788999999999999332221 


Q ss_pred             -----cc--------CCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCC--chHHHHHHHHcc
Q 013079          235 -----PA--------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPT--MNPKVAFELSER  298 (450)
Q Consensus       235 -----~~--------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~--~~~~~a~~~~~~  298 (450)
                           .+        ..+..-++.|+||-+|.||.|+ |+++. ++++.....++..     .+..  ..+.....++..
T Consensus       276 ~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRv-GviYS~ne~VvsaA~kmss-----f~~vSs~tQ~~la~LLSD  349 (471)
T KOG0256|consen  276 SEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRV-GVIYSNNEDVVSAATKMSS-----FGLVSSQTQYLLASLLSD  349 (471)
T ss_pred             cCceEHHHHhhccccCCCcEEEEEEeccccCCCceEE-EEEEecChHHHHHHHHHhh-----ccCCcHHHHHHHHHHhch
Confidence                 11        1245678999999999999998 88876 5667777666554     3332  233333333333


Q ss_pred             CC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC------CHHHHHHH
Q 013079          299 IP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME------TEEKANRL  368 (450)
Q Consensus       299 ~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~------~~~~~~~~  368 (450)
                      .+    .+.+..+|++.+..++.+.|+++++.....                   +.|.++|+++.      +.+.-..+
T Consensus       350 ~~f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s-------------------~AGlF~wvDlr~lL~s~tfe~El~L  410 (471)
T KOG0256|consen  350 EEFTREYLRENNKRLRIRHRYIVEGLKALGIPCLKS-------------------NAGLFCWVDLRKLLTSLTFEGELEL  410 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeec-------------------CCeeEEEEEhHHhcCcCChHHHHHH
Confidence            22    244555667778889999999988754321                   57889999886      22211223


Q ss_pred             HHHhh-ccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          369 MNYLQ-NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       369 ~~~l~-~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                      .+.+- ..+    +-+|.|+.|-.      .               .+|+.|+.|. .
T Consensus       411 w~~i~~~vk----lnlSpG~s~~C------~---------------EpGWFRvcFA-n  442 (471)
T KOG0256|consen  411 WERILDNVK----LNLSPGSSCHC------H---------------EPGWFRVCFA-N  442 (471)
T ss_pred             HHHHHHhhc----cccCCCCccee------c---------------CCCeEEEEec-c
Confidence            33322 112    56788866422      1               1699999999 5

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.87  E-value=4.7e-20  Score=185.46  Aligned_cols=221  Identities=17%  Similarity=0.136  Sum_probs=156.4

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-  175 (450)
                      +.+...+|++.+++++|.+.+++|+|   |++|+.+++.+++++||.| ++++.|..+...+.     ..|.++++++. 
T Consensus        51 ~~~g~~~Leeaia~~~g~~~vv~t~~---Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~-----~~Ga~pv~v~i~  121 (431)
T cd00617          51 GSKSFYDLEDAVQDLFGFKHIIPTHQ---GRGAENILFSILLKPGRTV-PSNMHFDTTRGHIE-----ANGAVPVDLVID  121 (431)
T ss_pred             CCCCHHHHHHHHHHHHCCCeEEEcCC---HHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHH-----hCCCEeEEEecc
Confidence            45668899999999999999999999   9999999999999999977 58888888877664     35666666544 


Q ss_pred             --------------CCHHHHHHhhhcCC----ceEEEEecCCCCc-ccccC---HHHHHHHHHhcCCEEEEeCCC-CC--
Q 013079          176 --------------SDHEMVNSAIVQGR----TKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTF-SP--  230 (450)
Q Consensus       176 --------------~d~~~l~~ai~~~~----t~lv~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~-~~--  230 (450)
                                    .|+++|++++ +++    +++|++++|+||+ |.+.+   +++|.++|++||+++|.|+++ ..  
T Consensus       122 ~~~~~~~~~pf~gniD~e~Le~~I-~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na  200 (431)
T cd00617         122 EAHDAQELIPFKGNIDVAKLEKLI-DEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENA  200 (431)
T ss_pred             cccccccccCCCCCcCHHHHHHHh-CcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhh
Confidence                          2789999999 544    8899999999998 78765   568899999999999999995 11  


Q ss_pred             -C------CC---CccCC------CCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhh---hhhhccCCCchHH
Q 013079          231 -L------VL---SPARL------GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQ---GALMLLGPTMNPK  290 (450)
Q Consensus       231 -~------~~---~~~~~------g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~---~~~~~~g~~~~~~  290 (450)
                       +      .+   ++.+.      ..|.++.|++|..+.+   +||++++++ +++++++....   +.....|......
T Consensus       201 ~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~---~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~  277 (431)
T cd00617         201 YFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVN---IGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDM  277 (431)
T ss_pred             hhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCc---cceEEEeCcHHHHHHHHHhccccCCccccccccHHHH
Confidence             1      11   11111      3688888888877654   578998876 58888765321   1111122222222


Q ss_pred             HHHH-HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013079          291 VAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG  331 (450)
Q Consensus       291 ~a~~-~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~  331 (450)
                      .|.+ .+..... ...+++..+++++|.+.|++.|+.+..|.
T Consensus       278 ~A~A~gL~e~~~-~~~l~~~~~~r~~l~~~L~~~G~~v~~P~  318 (431)
T cd00617         278 EALAQGLREAVE-EDYLRHRVEQVRYLGDRLDEAGVPIVEPA  318 (431)
T ss_pred             HHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHCCCCccCCC
Confidence            3222 2222111 23445555566889999999988766554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.87  E-value=1.3e-20  Score=190.13  Aligned_cols=252  Identities=16%  Similarity=0.246  Sum_probs=165.4

Q ss_pred             CCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCC-------CEEEEeCCCchhHHHHHHHhCCCc---
Q 013079           96 HFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSG-------GHVVAARTLYGGTHALLTHFFPRA---  165 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~g-------d~Vi~~~~~y~~~~~~~~~~~~~~---  165 (450)
                      +..+...++++.++++.+.+.+++|+|   |++|+.++++.+...+       ++|++..+.|+++...........   
T Consensus        78 ~~~~~~~~la~~l~~~~~~~~v~~~~g---g~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~  154 (396)
T PRK02627         78 YYIEPQEELAEKLVELSGMDKVFFCNS---GAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQ  154 (396)
T ss_pred             cCCHHHHHHHHHHHhhcCCCEEEECCC---cHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCcccc
Confidence            457889999999999999999999999   9999999998665332       679999999987654332111000   


Q ss_pred             -----cCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccc-cc---CHHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013079          166 -----CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA-VA---NIPELSRLAHDKGVTVVVDNTFSPLVLSP-  235 (450)
Q Consensus       166 -----~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~-v~---~l~~I~~la~~~gi~livD~~~~~~~~~~-  235 (450)
                           ....+..++..|++++++++ .+++++|++++++||+|. +.   .+++|.++|+++|+++|+||+|+++.... 
T Consensus       155 ~~~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~  233 (396)
T PRK02627        155 EGFEPLVEGFIYVPFNDIEALKAAI-TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK  233 (396)
T ss_pred             ccCCCCCCCceEeCCCCHHHHHHhc-CCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc
Confidence                 01122444555899999999 788999999999999994 43   38899999999999999999996553211 


Q ss_pred             ----cCC--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079          236 ----ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH  309 (450)
Q Consensus       236 ----~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~  309 (450)
                          ...  ..|++  |+||.++ +|+|+ |++++++++++.+..... .....++.+.+.++..++..++. ....++.
T Consensus       234 ~~~~~~~~~~pdi~--t~sK~~~-~G~ri-g~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~  307 (396)
T PRK02627        234 LFAYQHYGIEPDIM--TLAKGLG-GGVPI-GAVLAKEKVADVFTPGDH-GSTFGGNPLACAAALAVIEIIEE-EGLLENA  307 (396)
T ss_pred             eeeehhcCCCCCEE--EEcchhh-CCccc-EEEEEcHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHHHhh-ccHHHHH
Confidence                112  34554  5899999 78998 999898888877653222 11233344444444444332221 1223444


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      +++.+++.+.|++.....  |...             ...+.|.++++.++.  ....|...+..
T Consensus       308 ~~~~~~~~~~l~~~~~~~--~~~~-------------~~~~~g~~~~i~~~~--~~~~~~~~l~~  355 (396)
T PRK02627        308 AEVGEYLRAKLRELLEKY--PGIK-------------EVRGLGLMIGIELDR--PAAEIVKKALE  355 (396)
T ss_pred             HHHHHHHHHHHHHHHHhC--CCee-------------eeccCcEEEEEEecC--cHHHHHHHHHH
Confidence            555556666665432111  1100             011467789998842  24567776654

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.87  E-value=4.1e-20  Score=189.48  Aligned_cols=291  Identities=16%  Similarity=0.195  Sum_probs=194.3

Q ss_pred             hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ..+.++++.+++++|.+  .+++|+|   |++++.+++.++. .+||+|+++++.|+++...+..+... .|.+++.++.
T Consensus       112 ~~~~e~~~~la~l~g~~~~~v~~~~g---~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~-~G~~~~~v~~  187 (447)
T PRK00451        112 QAIFEYQTMICELTGMDVANASMYDG---ATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKG-QGIEVVEVPY  187 (447)
T ss_pred             HHHHHHHHHHHHHhCCCcceEEecCc---HHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHh-CCcEEEEecC
Confidence            44566668889999975  4689999   9999998888774 68999999999999988887544333 6888888876


Q ss_pred             C----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE--eCCCCCCCCCccCCCCeEEEeCCCC
Q 013079          176 S----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV--DNTFSPLVLSPARLGADVVVHSISK  249 (450)
Q Consensus       176 ~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv--D~~~~~~~~~~~~~g~di~~~S~sK  249 (450)
                      +    |++++++++ +++|++|++++| |+||.+.|+++|+++|+++|+++++  |.+..+....+.++++|+++.|.+|
T Consensus       188 ~~~~~d~~~l~~~i-~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k  265 (447)
T PRK00451        188 EDGVTDLEALEAAV-DDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLKPPGEYGADIVVGEGQP  265 (447)
T ss_pred             CCCCCCHHHHHHhc-CCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHhccCCCcccCCCCEEEECCCc
Confidence            5    899999999 889999999999 8999999999999999999999998  6543223334567799999997766


Q ss_pred             c---cccCccceEEEEEcCHHHHHHHHH-------------------------Hhhh-hhhccCCC-chH-HHHHHHHc-
Q 013079          250 F---ISGGADIIAGAVCGPANLVNSMMD-------------------------LHQG-ALMLLGPT-MNP-KVAFELSE-  297 (450)
Q Consensus       250 ~---~g~~g~~igG~l~~~~~~~~~l~~-------------------------~~~~-~~~~~g~~-~~~-~~a~~~~~-  297 (450)
                      +   +...|.++ |+++.++++++.+..                         .+.. .....+.. ..+ ..++..+. 
T Consensus       266 ~~~~~~~~Gpg~-G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~  344 (447)
T PRK00451        266 LGIPLSFGGPYL-GFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSL  344 (447)
T ss_pred             CCCCCCCCCCCc-hHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            4   33334445 999888877766310                         0000 00011111 111 22222221 


Q ss_pred             -cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc
Q 013079          298 -RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY  375 (450)
Q Consensus       298 -~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~  375 (450)
                       ..+.+.+..+++.++++++.+.|++++. .+. ++                  ..-.++.+.++.  ...++.+.|...
T Consensus       345 ~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~------------------~~~~~~~v~~~~--~~~~~~~~L~~~  403 (447)
T PRK00451        345 LGPEGLRELAEQNHQKAHYLAERLAEIGGVELF-DG------------------PFFNEFVVRLPK--PAEEVNEALLEK  403 (447)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec-CC------------------CeEEEEEEecCC--CHHHHHHHHHhc
Confidence             2234666677889999999999998753 442 21                  011133455541  245677777642


Q ss_pred             ccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          376 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       376 ~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                         | +.+.+         +.....          .+. .+.+|+|++ ..++++.++.|.++|+++
T Consensus       404 ---g-i~~~~---------~~~~~~----------~~~-~~~~rvs~~-~~~t~e~i~~l~~~L~~~  445 (447)
T PRK00451        404 ---G-ILGGY---------DLGRYY----------PEL-GNHLLVCVT-EKRTKEDIDALVAALGEV  445 (447)
T ss_pred             ---C-CCCCc---------cccccc----------CCc-CCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence               2 11110         000000          011 368999999 878888999999998865

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=1.1e-20  Score=182.10  Aligned_cols=290  Identities=18%  Similarity=0.280  Sum_probs=199.2

Q ss_pred             CCCChhHHHHHHHHHHHhC-CCeEEEecChHHHHHHHHHHHHHhcc----C-CCEEEEeCCCchhHHH-HH----H----
Q 013079           95 RHFNPTVLNLSRQMAALEG-TEAAYCTASDKAGMSAISSVLMQLCS----S-GGHVVAARTLYGGTHA-LL----T----  159 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g-~~~~~~tsg~~~gt~ai~~al~~l~~----~-gd~Vi~~~~~y~~~~~-~~----~----  159 (450)
                      -+.++...+|.+.|+++.+ .+.++|++|   |+||+..|++...+    + ..+||.....||+-.. .+    +    
T Consensus        80 ~~~~~~~~~la~~L~~~s~~~d~vff~NS---GaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~  156 (404)
T COG4992          80 LFYNEPQAELAEKLVELSPFADRVFFCNS---GAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYR  156 (404)
T ss_pred             ccCChHHHHHHHHHHhhCccccEEEEcCC---cHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhc
Confidence            3557889999999999996 899999999   99999999986422    1 2379988888876321 11    1    


Q ss_pred             -HhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          160 -HFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       160 -~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                       .+.|. . -.+++++..|++++++++ +++|.+|++|.++.+.|.+.+    ++++.++|++||+++|.||+|+++...
T Consensus       157 ~~F~Pl-~-~g~~~vpfnDi~al~~ai-~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRT  233 (404)
T COG4992         157 KGFGPL-L-PGFRHVPFNDIEALEAAI-DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRT  233 (404)
T ss_pred             cCCCCC-C-CCceecCCCCHHHHHHHh-ccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCcc
Confidence             12222 1 245677788999999999 889999999999999999965    889999999999999999999777532


Q ss_pred             -------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHH
Q 013079          235 -------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMK  307 (450)
Q Consensus       235 -------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~  307 (450)
                             -.....|+++  +.|.+|+ |.+| |+++.++.+.+.+..... ..++.|+.+...++...+.-+.. +...+
T Consensus       234 Gk~fA~e~~gV~PDI~t--laK~LgG-G~Pi-gA~la~~~~~~~~~~G~H-gSTfGGNpLacAv~~a~l~~l~~-e~ll~  307 (404)
T COG4992         234 GKLFAYEHYGVEPDILT--LAKALGG-GFPI-GAMLATEEIASAFTPGDH-GSTFGGNPLACAVALAVLEVLLE-EGLLE  307 (404)
T ss_pred             chHHHHHHhCCCCCEEE--eeccccC-Cccc-eeeEEchhhhhcCCCCcc-cCCCCcCHHHHHHHHHHHHHHcc-hhHHH
Confidence                   1223468887  9999995 5999 777666554554443333 34455555555555444433221 22334


Q ss_pred             HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccc
Q 013079          308 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      +.++..+++.+.|+++..+  +|-+             .+.+|.|.++.+++.....+..++..+..   .|++....| 
T Consensus       308 ~v~~~g~~~~~~L~~l~~~--~~~v-------------~~vRG~GLmiGiel~~~~~a~~~~~~~~~---~gvL~~~a~-  368 (404)
T COG4992         308 NVREKGEYLLQRLRELKRR--YPLV-------------KEVRGRGLMIGIELKEPYRARDIVRALRE---EGVLVLPAG-  368 (404)
T ss_pred             HHHHHHHHHHHHHHHHhhc--CCce-------------eeeecceeEEEEEecCcccHHHHHHHHHH---CCeEEecCC-
Confidence            4556667777777765321  1211             13458999999999854346677777764   333333332 


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHhh
Q 013079          388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~~  443 (450)
                                                 ++.|||... +    +++++.++.|++++....
T Consensus       369 ---------------------------~~ViR~~Pp-L~i~~eei~~~~~~l~~~l~~~~  400 (404)
T COG4992         369 ---------------------------PNVIRFLPP-LVITEEEIDEALDALERALAAAS  400 (404)
T ss_pred             ---------------------------CCeEEecCC-ccCCHHHHHHHHHHHHHHHHHhh
Confidence                                       457888877 5    666677777777777554

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.87  E-value=2.1e-20  Score=188.19  Aligned_cols=252  Identities=16%  Similarity=0.173  Sum_probs=164.3

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh----ccCCC----EEEEeCCCchhHHHHHHHhCCC--c-
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL----CSSGG----HVVAARTLYGGTHALLTHFFPR--A-  165 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l----~~~gd----~Vi~~~~~y~~~~~~~~~~~~~--~-  165 (450)
                      .++...+++++|+++.+.+.++|++|   |++|+..+++.+    ..+||    +|++.++.|++...........  . 
T Consensus        71 ~~~~~~~la~~l~~~~~~~~v~~~~s---GseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~  147 (389)
T PRK01278         71 RIPEQERLAERLVENSFADKVFFTNS---GAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYL  147 (389)
T ss_pred             CChHHHHHHHHHHhhCCCCEEEEcCC---cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhc
Confidence            46778899999999988889999999   999999999876    34555    8999999999876544211000  0 


Q ss_pred             cC-----eeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013079          166 CN-----ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLSP-  235 (450)
Q Consensus       166 ~g-----~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~~-  235 (450)
                      .+     ..+..++..|++++++++ ++++++|++++++|++|.+.    .+++|.++|++||+++|+||+|+++.... 
T Consensus       148 ~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~  226 (389)
T PRK01278        148 EGFGPLVPGFDQVPFGDIEALKAAI-TPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK  226 (389)
T ss_pred             ccCCCCCCCceEeCCCCHHHHHHhh-CCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc
Confidence            00     112334556999999999 77899999999999998443    58999999999999999999996553211 


Q ss_pred             ------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079          236 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH  309 (450)
Q Consensus       236 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~  309 (450)
                            .....|+  .|++|.++ +|+|+ |++++++++++.+..... ..+..++.+.+.++...+..++. ....++.
T Consensus       227 ~~~~~~~~~~pdi--~t~sK~l~-~G~~i-g~~~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~l~~-~~~~~~~  300 (389)
T PRK01278        227 LFAHEWAGVTPDI--MAVAKGIG-GGFPL-GACLATEEAAKGMTPGTH-GSTYGGNPLAMAVGNAVLDVILA-PGFLDNV  300 (389)
T ss_pred             ceeecccCCCCCE--EEEehhcc-CCcce-EEEEEcHHHHhccCCCCC-CCCCCccHHHHHHHHHHHHHHhh-hHHHHHH
Confidence                  1223455  46999999 68998 888888888776643322 22223333333333333332211 1223445


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      .++.+++.+.|+++...  .|.+..            ...+.|.++++++..  ....|...|..
T Consensus       301 ~~~~~~l~~~l~~l~~~--~~~~~~------------~v~g~G~~~~i~~~~--~~~~~~~~l~~  349 (389)
T PRK01278        301 QRMGLYLKQKLEGLVDR--FPDVIE------------EVRGKGLLLGLKCVV--PNRDLVQALRD  349 (389)
T ss_pred             HHHHHHHHHHHHHHHhh--CCCcee------------eEecccEEEEEEEec--CHHHHHHHHHH
Confidence            55566666666543110  110000            112567788888853  24567776654

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.86  E-value=5.7e-19  Score=172.12  Aligned_cols=322  Identities=20%  Similarity=0.240  Sum_probs=215.2

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCc
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLY  151 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y  151 (450)
                      .+.+.+.++..|        ++.  .+.++++++.+|++.|++.++.++|   ||.|+.++++++ +.+||+||+++.+|
T Consensus        18 ~~~v~~vl~sg~--------i~~--G~~v~~FE~~~ae~~G~k~ava~~s---gT~AL~laL~al~ig~GDeVI~ps~Tf   84 (374)
T COG0399          18 LAAVQEVLKSGW--------LTG--GPFVRRFEQAFAEYLGVKYAVAVSS---GTAALHLALLALAIGPGDEVIVPSFTF   84 (374)
T ss_pred             HHHHHHHHHcCC--------eec--ChHHHHHHHHHHHHhCCCeEEEecC---hHHHHHHHHHhcCCCCCCEEEecCCch
Confidence            567777775432        222  5789999999999999999999999   999999999966 68999999999999


Q ss_pred             hhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEe
Q 013079          152 GGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVD  225 (450)
Q Consensus       152 ~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD  225 (450)
                      .++...+.     ..|.+++++|++      |++.|+++| +++||+|+.   -+--|...|+++|.++|++||++||.|
T Consensus        85 vATan~i~-----~~Ga~PVFvDid~~T~nid~~~ie~aI-t~~tKAIip---Vhl~G~~~dm~~i~~la~~~~l~vIED  155 (374)
T COG0399          85 VATANAVL-----LVGAKPVFVDIDPDTLNIDPDLIEAAI-TPRTKAIIP---VHLAGQPCDMDAIMALAKRHGLPVIED  155 (374)
T ss_pred             HHHHHHHH-----HcCCeEEEEecCCcccCCCHHHHHHHc-ccCCeEEEE---ehhccCCCCHHHHHHHHHHcCCeEEEE
Confidence            99988875     479999999987      899999999 889999985   445788999999999999999999999


Q ss_pred             CCC-CCCCCCccCCC--CeEEEeCC--CCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhc----------cC--CCc
Q 013079          226 NTF-SPLVLSPARLG--ADVVVHSI--SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALML----------LG--PTM  287 (450)
Q Consensus       226 ~~~-~~~~~~~~~~g--~di~~~S~--sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~----------~g--~~~  287 (450)
                      +++ -+-.+.....|  .|+.++||  +|.+....   ||+++. ++++.++++.++.+....          .|  .-+
T Consensus       156 aAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgE---GGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm  232 (374)
T COG0399         156 AAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGE---GGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRL  232 (374)
T ss_pred             cchhccCeecCcccccccceEEEEecCCCCccccC---ceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCH
Confidence            998 22223333333  35666665  69888442   687765 567888887665533211          22  224


Q ss_pred             hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHH
Q 013079          288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKAN  366 (450)
Q Consensus       288 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~  366 (450)
                      ....|+..+..++.+++..++.++.++.+.+.|++++. +..|..+..-.|.            =.+..+.++.. ...+
T Consensus       233 ~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~-~~~p~~~~~~~~~------------~~~~~i~~~~~~~~R~  299 (374)
T COG0399         233 TEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPG-ITLPPEPDGAVHA------------WHLYTILVDEEGISRD  299 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccCCCCCceee------------eeeeEEEecCCCCCHH
Confidence            45566666667788888888888888889999987753 2222211110110            01444555532 2346


Q ss_pred             HHHHHhhccccccccccccccccc-ccccccccc-----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYET-LMSCSGSST-----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s-~~~~~~~~~-----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      .+++.|+..+    +.  .+..+. +-.++....     ...++..+..    ....+++-+. ..-.++.++.+.++|.
T Consensus       300 ~l~~~L~~~g----i~--~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~----~~r~l~LP~~-p~l~~~~~~~V~~~l~  368 (374)
T COG0399         300 ALMESLKEAG----VG--AVVYFRPLHLQPAYRQLGYFPEGDLPNAEDL----SERILSLPLH-PNLSEEDVDRVIEALK  368 (374)
T ss_pred             HHHHHHHhCC----CC--ceEEeeccccchhhhcccccccCCCchHHHH----hhCeEEccCC-CCCCHHHHHHHHHHHH
Confidence            6777777522    22  211111 111111110     0123333222    2567888777 6666777777777776


Q ss_pred             Hhh
Q 013079          441 RMQ  443 (450)
Q Consensus       441 ~~~  443 (450)
                      ++-
T Consensus       369 ~~~  371 (374)
T COG0399         369 EVL  371 (374)
T ss_pred             HHh
Confidence            653

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.85  E-value=1.4e-19  Score=182.95  Aligned_cols=286  Identities=16%  Similarity=0.177  Sum_probs=185.5

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc--------cCCCEEEEeCCCchhHHHHHHH--------
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTH--------  160 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~--------  160 (450)
                      .++...++++.|+++.+.+.++|++|   |++|+..+++...        ...+.|+..+..||+.......        
T Consensus        80 ~~~~~~~l~~~l~~~~~~~~~~~~~s---GseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~  156 (403)
T PRK05093         80 TNEPALRLAKKLIDATFAERVFFANS---GAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYS  156 (403)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCc---hHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhh
Confidence            35567799999999988889999999   9999999998541        1235788888888886432211        


Q ss_pred             --hCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccc-cC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          161 --FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV-AN----IPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       161 --~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v-~~----l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                        +.+  ....+..++..|++++++.+ .+++++|++++ .|++|.+ .+    +++|.++|++||+++|+||+|+++..
T Consensus       157 ~~~~~--~~~~~~~~~~~d~~~l~~~l-~~~~aaiiiep-~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~  232 (403)
T PRK05093        157 DGFGP--KPADITHVPFNDLAAVKAVI-DDHTCAVVVEP-IQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGR  232 (403)
T ss_pred             hcCCC--CCCCcEEeCCCCHHHHHHHh-cCCeEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence              111  12245667777999999999 77899999994 5555554 33    89999999999999999999965533


Q ss_pred             Cc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH
Q 013079          234 SP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM  306 (450)
Q Consensus       234 ~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~  306 (450)
                      ..       ..+..|+  .|++|.++ +|+|+ ||+++++++++.+...... ....++.+.+.++..++..+. ..+..
T Consensus       233 ~g~~~~~~~~~~~pdi--~s~sK~l~-~G~ri-g~vv~~~~i~~~l~~~~~~-~t~~~~~~~~~aa~a~L~~~~-~~~~~  306 (403)
T PRK05093        233 TGDLFAYMHYGVTPDI--LTSAKALG-GGFPI-GAMLTTAEIASHFKVGTHG-STYGGNPLACAVAEAVFDIIN-TPEVL  306 (403)
T ss_pred             CccchhhhhcCCCCCE--EEeccccc-CCcce-EEEEEcHHHHhhcCCCCCC-CCCCCCHHHHHHHHHHHHHHh-hccHH
Confidence            21       1123554  57999999 78998 9999999888877543221 122333444444433333322 12345


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccc
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVS  384 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs  384 (450)
                      ++++++++++.+.|++++.......               ...+.|.++++.++..  ....+|...+...   | +.+.
T Consensus       307 ~~~~~~~~~l~~~L~~~~~~~~~~~---------------~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~---G-v~v~  367 (403)
T PRK05093        307 EGVKARRQRFVDGLQKINQKYGVFS---------------EIRGMGLLIGAELKPQYKGRARDFLNAAAEE---G-VMVL  367 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCeE---------------eEeeCceEEEEEecCcchhHHHHHHHHHHHC---C-eEEe
Confidence            6678888899999987632110000               1114677899998642  2356777776542   2 2221


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .+                           ..+.|||+++ ....++.++.+.+.|.++
T Consensus       368 ~~---------------------------g~~~lRl~~~-~~~~~~~i~~~~~~l~~~  397 (403)
T PRK05093        368 VA---------------------------GPDVLRFAPS-LVIEEADIDEGLARFEKA  397 (403)
T ss_pred             cC---------------------------CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence            10                           1368999988 654455555555555443

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.85  E-value=2.6e-19  Score=180.45  Aligned_cols=253  Identities=15%  Similarity=0.152  Sum_probs=169.6

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc--------cCCCEEEEeCCCchhHHHHHHHhCC--C--
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFP--R--  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~--~--  164 (450)
                      .++...+|+++|+++.+.+.++|++|   |++|+..+++.+.        ...++|+..+..||+..........  .  
T Consensus        75 ~~~~~~~la~~L~~~~~~~~~~f~~S---GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~  151 (397)
T TIGR03246        75 TNEPVLRLAKKLVDATFADKVFFCNS---GAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYS  151 (397)
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccc
Confidence            46778899999999998889999999   9999999998652        1235788888888886432211100  0  


Q ss_pred             ----ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013079          165 ----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS--  234 (450)
Q Consensus       165 ----~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~--  234 (450)
                          .....+..++.+|++++++.+ .+++++|++++++++.|.+.    .+++|.++|++||+++|+||+|+++...  
T Consensus       152 ~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~  230 (397)
T TIGR03246       152 QGFAPLPGGIKHAPYNDLAAAKALI-SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE  230 (397)
T ss_pred             cCCCCCCCceEEeCCCCHHHHHHHh-ccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc
Confidence                011234566777999999999 77899999998888888663    3999999999999999999998555321  


Q ss_pred             ---c--cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079          235 ---P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH  309 (450)
Q Consensus       235 ---~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~  309 (450)
                         .  ....+|++  +++|.++ .|+++ |++++++++++.+..... ..+..++.+.+.++...+..++. ....++.
T Consensus       231 ~~a~~~~gv~pDi~--t~~K~lg-gG~pi-gav~~~~~i~~~~~~~~~-~~t~~~~p~~~aaa~a~l~~~~~-~~l~~~~  304 (397)
T TIGR03246       231 LYAYMHYGVTPDIL--TSAKALG-GGFPI-GAMLTTTEIAAHLKVGTH-GTTYGGNPLACAVAGKVLDLVNT-PELLAGV  304 (397)
T ss_pred             chhhhhcCCCCCEE--Eeehhhh-CCcce-eEEEEcHHHHHhccCCCc-CCCCCCCHHHHHHHHHHHHHHhh-ccHHHHH
Confidence               1  12245666  5899998 57898 888888888877753222 22233444444444333332221 2345667


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN  374 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~  374 (450)
                      +++.+++.+.|++++.+.  +-..             +.+|.|.++.+++..  ......|...|..
T Consensus       305 ~~~~~~l~~~L~~l~~~~--~~~~-------------~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~  356 (397)
T TIGR03246       305 KQRHDLFVDGLEKINARY--NVFS-------------EIRGKGLLIGAVLTEAYQGKAKQFVNAAAE  356 (397)
T ss_pred             HHHHHHHHHHHHHHHhcC--CCeE-------------eeecCceEEEEEEcCchhhHHHHHHHHHHH
Confidence            778888888887754211  1000             112567888888853  2345677777664

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.85  E-value=5.4e-19  Score=167.22  Aligned_cols=311  Identities=20%  Similarity=0.181  Sum_probs=206.5

Q ss_pred             ccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCC
Q 013079           62 IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSG  141 (450)
Q Consensus        62 i~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~g  141 (450)
                      -.+|.|..-+.++.+..+.+...   ...-.||  .+|.++++++++++++|.+.++|++|   ||.||.++|.+.++||
T Consensus         3 ~f~SDn~~g~~~~m~eam~~a~~---~~~~~YG--~D~~~~~~e~~~ae~~g~~a~~Fv~s---GT~aN~lal~~~~~~~   74 (342)
T COG2008           3 DFRSDNVAGPTPEMREALAAANA---VGDDVYG--EDPTTNALEQRIAELFGKEAALFVPS---GTQANQLALAAHCQPG   74 (342)
T ss_pred             ccccCccCCCCHHHHHHHHhccc---cCCCCCC--CCHHHHHHHHHHHHHhCCceEEEecC---ccHHHHHHHHHhcCCC
Confidence            45677887777666555554431   2233466  67999999999999999999999999   9999999999999999


Q ss_pred             CEEEEeCCCchhHHHHH-HHhCCCccCeeEEEeCCC----CHHHHHHhhhcC-----CceEEEEecCCCCcccccC---H
Q 013079          142 GHVVAARTLYGGTHALL-THFFPRACNITTTFVDIS----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVAN---I  208 (450)
Q Consensus       142 d~Vi~~~~~y~~~~~~~-~~~~~~~~g~~v~~v~~~----d~~~l~~ai~~~-----~t~lv~i~~~~NptG~v~~---l  208 (450)
                      +.|++....|-...+.- ..++.  .+.+...++..    ++++|++++..+     .+.++++++.+|+.|++.+   +
T Consensus        75 ~~vi~~~~aHi~~~E~Ga~~~~~--~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el  152 (342)
T COG2008          75 ESVICHETAHIYTDECGAPEFFG--GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDEL  152 (342)
T ss_pred             CeEEEeccccceecccCcHHHHc--CCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHH
Confidence            99999887775443321 01111  13344444322    899999988432     3567777777779999987   5


Q ss_pred             HHHHHHHHhcCCEEEEeCCC-----CCCCCCcc--CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhh
Q 013079          209 PELSRLAHDKGVTVVVDNTF-----SPLVLSPA--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM  281 (450)
Q Consensus       209 ~~I~~la~~~gi~livD~~~-----~~~~~~~~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~  281 (450)
                      ++|.++||++|+++|+|.+-     ..+..+..  ..++|.++.++||.++.++   +.+++++.++++++..+++    
T Consensus       153 ~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK----  225 (342)
T COG2008         153 EAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRK----  225 (342)
T ss_pred             HHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHH----
Confidence            57888999999999999983     11121111  2279999999999999774   4667899999999988877    


Q ss_pred             ccCCCchHH--HHHHHHccCCc-HHHHHHHH-HHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          282 LLGPTMNPK--VAFELSERIPH-LGLRMKEH-CHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       282 ~~g~~~~~~--~a~~~~~~~~~-l~~~~~~~-~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                      ..|..+.+.  .++..+..+++ +..+..++ .+.+.+|.+.|++. |.++..|.                   ..+++.
T Consensus       226 ~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~-------------------~tN~vf  286 (342)
T COG2008         226 RAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPV-------------------ETNMVF  286 (342)
T ss_pred             HhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCC-------------------cccEEE
Confidence            445444332  22222222222 23333333 44588999999855 56776653                   234788


Q ss_pred             EEeCCHHH-HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCC--CeEEEEeCCCCCHHHHHH
Q 013079          357 LDMETEEK-ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA--GLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       357 ~~l~~~~~-~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~--~~iRiS~g~~~~~~~~i~  433 (450)
                      +.++.... ...+...+..          .|                        ..++.  ..+|+-.. ..+.++.++
T Consensus       287 ~~l~~~~i~~l~~~~~~~~----------~~------------------------~~~~~~~~~vRfvts-~a~~~edv~  331 (342)
T COG2008         287 VRLPESAIEALRLAGALFY----------RG------------------------VLIGAHGEIVRFVTS-WATSEEDVD  331 (342)
T ss_pred             EECChHHHHHHHhhchhhe----------ee------------------------eeccCCCceEEEEee-ccCCHHHHH
Confidence            88874321 1111111111          00                        00111  36999999 989999999


Q ss_pred             HHHHHHHHhh
Q 013079          434 QFEKALSRMQ  443 (450)
Q Consensus       434 ~l~~al~~~~  443 (450)
                      +|...++.+.
T Consensus       332 ~~~~~~~~~~  341 (342)
T COG2008         332 ELVAAIKALL  341 (342)
T ss_pred             HHHHHHHHhh
Confidence            9988887653

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.85  E-value=3.6e-19  Score=179.93  Aligned_cols=254  Identities=17%  Similarity=0.145  Sum_probs=164.1

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc----------CCCEEEEeCCCchhHHHHHHHhCCC---
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS----------SGGHVVAARTLYGGTHALLTHFFPR---  164 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~----------~gd~Vi~~~~~y~~~~~~~~~~~~~---  164 (450)
                      .+..+.+++.++++.+.+.++|++|   |++|+..+++.+..          .+++|++.+-.|++...........   
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~S---Gs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~  148 (400)
T PTZ00125         72 NDVLGLAEKYITDLFGYDKVLPMNS---GAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKC  148 (400)
T ss_pred             CHHHHHHHHHHHhCCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcch
Confidence            5688999999999998889999999   99999999986531          3468998888888764332111000   


Q ss_pred             -----ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079          165 -----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-  234 (450)
Q Consensus       165 -----~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-  234 (450)
                           .....+..++..|++++++++..+++++|++++++||+|.+.+    +++|.++|++||+++|+|++|+++... 
T Consensus       149 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G  228 (400)
T PTZ00125        149 YNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG  228 (400)
T ss_pred             hccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence                 0011234556679999999983368999999999999999987    999999999999999999998655321 


Q ss_pred             ----c--cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHH
Q 013079          235 ----P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE  308 (450)
Q Consensus       235 ----~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~  308 (450)
                          .  .....|+++  ++|.++++++++ |+++.++++++.+..... .....++.+.+.++...+..+.. ....++
T Consensus       229 ~~~~~~~~~~~pd~~~--~sK~l~~g~~~i-g~v~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~~~l~~i~~-~~~~~~  303 (400)
T PTZ00125        229 KLLAHDHEGVKPDIVL--LGKALSGGLYPI-SAVLANDDVMLVIKPGEH-GSTYGGNPLACAVAVEALEVLKE-EKLAEN  303 (400)
T ss_pred             hhhHHHhcCCCCCEEE--EcccccCCCcCc-EEEEEcHHHHhhccCCCC-CCCCCcCHHHHHHHHHHHHHHHh-cCHHHH
Confidence                1  122357776  679999755588 899999988887754322 11122333333333222222111 012233


Q ss_pred             HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhc
Q 013079          309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN  374 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~  374 (450)
                      ..++.+.+.+.|++.-..  .+...             ...+.|.++++.++.  ......+...|..
T Consensus       304 ~~~~~~~l~~~l~~l~~~--~~~~~-------------~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~  356 (400)
T PTZ00125        304 AQRLGEVFRDGLKELLKK--SPWVK-------------EIRGKGLLNAIVFDHSDGVNAWDLCLKLKE  356 (400)
T ss_pred             HHHHHHHHHHHHHHHHhc--CCCeE-------------EEecccEEEEEEEccCcchHHHHHHHHHHH
Confidence            445556666666553000  01000             011457788888863  2345667777654

>PRK07505 hypothetical protein; Provisional

Probab=99.85  E-value=4.5e-18  Score=171.94  Aligned_cols=192  Identities=15%  Similarity=0.146  Sum_probs=133.8

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc----cCCC-EEEEeC
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC----SSGG-HVVAAR  148 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~----~~gd-~Vi~~~  148 (450)
                      +++.+.++. +++.......++...+..+++++.|+++++. ..+++++   |++|+..++..+.    .+|+ .||+.+
T Consensus        67 ~A~~~~l~~-~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~s---G~~a~~~ai~~~~~~~~~~~~~~vi~~~  141 (402)
T PRK07505         67 EGAVDALKR-TGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTS---CSAAHLGILPLLASGHLTGGVPPHMVFD  141 (402)
T ss_pred             HHHHHHHHH-hCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECC---hHHHHHHHHHHHHhcccCCCCCCEEEEc
Confidence            566665543 3421111122234577889999999999988 7777778   8889988886432    2233 366666


Q ss_pred             CCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC
Q 013079          149 TLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF  228 (450)
Q Consensus       149 ~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~  228 (450)
                      ..||+..........  .+.++.+++..|++++++++ +++++++++.+|+||+|.+.++++|.++|+++|+++|+||+|
T Consensus       142 ~~~H~s~~~~~~~~~--~~~~v~~~~~~d~~~l~~~~-~~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~  218 (402)
T PRK07505        142 KNAHASLNILKGICA--DETEVETIDHNDLDALEDIC-KTNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAH  218 (402)
T ss_pred             hhhhHhHHhhhhhhh--cCCeEEEeCCCCHHHHHHHH-hcCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcc
Confidence            666654322222221  24577888888999999988 667889999999999999999999999999999999999997


Q ss_pred             --CCCC-----CC--ccC---CCCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhh
Q 013079          229 --SPLV-----LS--PAR---LGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQ  277 (450)
Q Consensus       229 --~~~~-----~~--~~~---~g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~  277 (450)
                        +.+.     +.  ...   ...++++.|++|.++++|    |+++ .++++++.+.....
T Consensus       219 ~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G----g~~~~~~~~~~~~~~~~~~  276 (402)
T PRK07505        219 GLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG----GVIMLGDAEQIELILRYAG  276 (402)
T ss_pred             cccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC----eEEEeCCHHHHHHHHHhCC
Confidence              2221     11  111   234688899999999764    7765 57788887766443

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.84  E-value=5.7e-19  Score=175.95  Aligned_cols=307  Identities=18%  Similarity=0.204  Sum_probs=201.9

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .+.++++++++++++|.+.++.|+|   ||.|+.+++.++ +++||+|+++..+|.++...+.     ..|.+++++|++
T Consensus        24 g~~~~~fE~~~a~~~g~~~~~~~~s---gt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~-----~~G~~pv~~Di~   95 (363)
T PF01041_consen   24 GPYVEEFEKEFAEYFGVKYAVAVSS---GTSALHLALRALGLGPGDEVIVPAYTFPATASAIL-----WAGAEPVFVDID   95 (363)
T ss_dssp             SHHHHHHHHHHHHHHTSSEEEEESS---HHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH-----HTT-EEEEE-BE
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCC---hhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHH-----HhccEEEEEecc
Confidence            5899999999999999999999999   999999999987 6789999999999999988875     479999999876


Q ss_pred             ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCCC--CeEEEeCC
Q 013079          177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARLG--ADVVVHSI  247 (450)
Q Consensus       177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~g--~di~~~S~  247 (450)
                            |++++++++ +++|++|++.+   ..|...|+++|.++|+++|+++|.|++++. ..++....|  .|+.++|+
T Consensus        96 ~~~~~id~~~~~~~i-~~~t~ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf  171 (363)
T PF01041_consen   96 PETLNIDPEALEKAI-TPKTKAILVVH---LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSF  171 (363)
T ss_dssp             TTTSSB-HHHHHHHH-HTTEEEEEEE----GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEES
T ss_pred             CCcCCcCHHHHHHHh-ccCccEEEEec---CCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecC
Confidence                  899999999 89999998754   578889999999999999999999999832 222222221  48888887


Q ss_pred             --CCccccCccceEEEEEc-CHHHHHHHHHHhhhhhh------c-----cC--CCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079          248 --SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------L-----LG--PTMNPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       248 --sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------~-----~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                        +|.+....   ||+++. ++++.++++.++.....      .     .|  ..++...|+.++..++.+++++++.++
T Consensus       172 ~~~K~i~~ge---GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~  248 (363)
T PF01041_consen  172 HPTKIITTGE---GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRE  248 (363)
T ss_dssp             STTSSS-SSS----EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCCCcCCC---CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHH
Confidence              59986433   688765 56788888776653211      0     11  236667777777788889999998899


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      +++.+.+.|...+.....+..+....            .....+.+.+++.  .....+++.|...+    +........
T Consensus       249 ~a~~y~~~L~~~~~~~~~~~~~~~~~------------~~~~~f~i~~~~~~~~~rd~l~~~L~~~G----I~~~~~~~~  312 (363)
T PF01041_consen  249 NAQRYREALAGIPGIKPPPIPDGAER------------SSYYRFPIRLPDEALADRDELVEALRARG----IETRPHYPK  312 (363)
T ss_dssp             HHHHHHHHHTTGTTEEEEGCGTTTEE------------BCESSEEEEETCCGCSTHHHHHHHHHHTT----BEEBCSTSS
T ss_pred             HHHHHHHHHhcCCCcccccccccccc------------cccccccccccccccchHHHHHHHHHHCC----CcccccccC
Confidence            99999999988765211111111100            1122456666642  12567788877532    343333211


Q ss_pred             cccccccccc-----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          390 TLMSCSGSST-----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       390 s~~~~~~~~~-----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      .+-..+....     ...++..+..    ....|.+-+. ..-+++.++.+.++++
T Consensus       313 pl~~~~~~~~~~~~~~~~~P~ae~l----~~r~l~LP~~-~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  313 PLHRQPVYRSYPYYAPGDLPNAERL----SQRLLSLPIH-PRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             CGGGSGGGTTGEEEETSSSHHHHHH----HHHEEEEEHS-TTSCHHHHHHHHHHHH
T ss_pred             chhhhHHHHhcCccccCCCHHHHHH----HhCeEECcCC-CCCCHHHHHHHhhccC
Confidence            1111111110     1122222222    2467888888 6667777888877763

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.84  E-value=5.5e-19  Score=177.13  Aligned_cols=286  Identities=14%  Similarity=0.155  Sum_probs=182.3

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc-cCC-CEEEEeCCCchhHHHHHHHhCCC---c-----c
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC-SSG-GHVVAARTLYGGTHALLTHFFPR---A-----C  166 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~-~~g-d~Vi~~~~~y~~~~~~~~~~~~~---~-----~  166 (450)
                      .++...++.+.+++..+.+.++|++|   |++|+..+++... .+| ++|++.++.|++...........   .     .
T Consensus        69 ~~~~~~~la~~l~~~~~~~~~~~~~s---G~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~  145 (377)
T PRK02936         69 TNSLQEEVASLLAENSAGDLVFFCNS---GAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPL  145 (377)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEeCC---cHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCC
Confidence            35677788888888776678999999   9999999998532 234 67999999888654322111000   0     0


Q ss_pred             CeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------
Q 013079          167 NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------  235 (450)
Q Consensus       167 g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-------  235 (450)
                      ...+.+++.+|++++++.+ .+++++|+++++++++|.+.+    +++|.++|++||+++|+||+|.++....       
T Consensus       146 ~~~~~~~~~~d~~~l~~~~-~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~  224 (377)
T PRK02936        146 LPGFTHVPFNDIKALKEVM-NEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQ  224 (377)
T ss_pred             CCCceEeCCCCHHHHHHhc-cCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHh
Confidence            1134456667999999999 788999999999999887743    9999999999999999999996554321       


Q ss_pred             cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013079          236 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI  315 (450)
Q Consensus       236 ~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~  315 (450)
                      .....|++  +++|.++ +|+++ |++++++++.+.+..... ..+..++.+.+.++..++..+. ....+++..++.++
T Consensus       225 ~~~~~di~--t~sK~l~-~G~~i-g~v~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~  298 (377)
T PRK02936        225 FGLDPDIV--TVAKGLG-NGIPV-GAMIGKKELGTAFGPGSH-GSTFGGNPLAMAAAKEVLQVIK-QPSFLEEVQEKGEY  298 (377)
T ss_pred             hCCCCcEE--EEccccc-CCCcc-EEEEEcHHHHhhccCCCC-CCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence            11234654  5999999 78998 899999888877643222 1122334444444444443321 12344556677777


Q ss_pred             HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          316 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       316 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      +.+.|++....  .|...             ...+.|.+++++++..  ...+.+.+..   .| +.+..+         
T Consensus       299 l~~~L~~~~~~--~~~~~-------------~v~~~g~~~~i~~~~~--~~~~~~~l~~---~g-v~v~~~---------  348 (377)
T PRK02936        299 FLQKLQEELEH--LECVK-------------NIRGKGLMIGIECTEE--VAPVIEQLRE---EG-LLVLSA---------  348 (377)
T ss_pred             HHHHHHHHHhh--CCcEE-------------eEeecceEEEEEecch--HHHHHHHHHH---CC-eEEecC---------
Confidence            77777653100  01100             0013567899999753  4566666654   22 221110         


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                        ..+.|||++. ...+++.++.+.+.|.+
T Consensus       349 ------------------g~~~lRi~p~-~~~~~~~i~~~i~~l~~  375 (377)
T PRK02936        349 ------------------GPNVIRLLPP-LVVTKEELDQAVYLLKK  375 (377)
T ss_pred             ------------------CCCEEEEECC-cccCHHHHHHHHHHHHH
Confidence                              1368999986 44555556666555543

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.84  E-value=7.6e-19  Score=177.58  Aligned_cols=292  Identities=17%  Similarity=0.173  Sum_probs=187.7

Q ss_pred             CCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc--------cCCCEEEEeCCCchhHHHHHHHhCCCc--
Q 013079           96 HFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFPRA--  165 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~--  165 (450)
                      +.++...+++++|+++.+.+.++|++|   |++|+..+++...        ..+.+|+..+..||+............  
T Consensus        78 ~~~~~~~~la~~l~~~~~~~~v~~~~s---GseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~  154 (406)
T PRK12381         78 YTNEPVLRLAKKLIDATFADRVFFCNS---GAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKY  154 (406)
T ss_pred             cCCHHHHHHHHHHHhhCCCCeEEEcCC---cHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCccc
Confidence            346777899999999988889999999   9999999998642        134679999999988754321111000  


Q ss_pred             ------cCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccc-----cCHHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          166 ------CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV-----ANIPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       166 ------~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v-----~~l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                            .-..+..++..|++++++.+ .+++++|+++ |.|++|.+     ..+++|.++|++||+++|+||+|.++...
T Consensus       155 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~  232 (406)
T PRK12381        155 SQDFAPLPPDIRHAAYNDLNSASALI-DDQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRT  232 (406)
T ss_pred             ccCCCCCCCCeeEeCCCCHHHHHHhc-cCCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCC
Confidence                  00123455667999999999 7789999997 56777654     24889999999999999999998555321


Q ss_pred             c-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHH
Q 013079          235 P-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMK  307 (450)
Q Consensus       235 ~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~  307 (450)
                      .       ..+..|+  .|++|.++ +|+++ |++++++++++.+..... ..+..++.+.+.++...+..++ .....+
T Consensus       233 G~~~~~~~~~v~pDi--~t~sK~l~-gG~~i-g~~~~~~~~~~~~~~~~~-~~t~~~~pl~~aaa~a~l~~l~-~~~~~~  306 (406)
T PRK12381        233 GELYAYMHYGVTPDV--LTTAKALG-GGFPI-GAMLTTEKCASVMTVGTH-GTTYGGNPLASAVAGKVLELIN-TPEMLN  306 (406)
T ss_pred             cchhhhHhhCCCCCE--EEehhhhh-CCCce-EEEEEcHHHHhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHh-hccHHH
Confidence            1       1223565  47999999 57998 999899888887754222 1123334444444444333222 123456


Q ss_pred             HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccc
Q 013079          308 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSL  385 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~  385 (450)
                      +..++.+++.+.|++++.+.  +...             +.+|.|.+++++++..  ..+..+...+..   .| +.+..
T Consensus       307 ~~~~~~~~l~~~L~~l~~~~--~~~~-------------~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~---~G-v~v~~  367 (406)
T PRK12381        307 GVKQRHDWFVERLNTINARY--GLFS-------------EIRGLGLLIGCVLNAEYAGKAKQISQEAAK---AG-VMVLI  367 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhC--CCEE-------------EEecCeEEEEEEecCchhhHHHHHHHHHHH---CC-cEEee
Confidence            66778888888887753211  1000             1125788999998742  235666666664   23 22210


Q ss_pred             ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHhhhc
Q 013079          386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       386 G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~~~~  445 (450)
                      .                           .++.|||++. .    +++++.++.|.+++.++...
T Consensus       368 ~---------------------------g~~~lRl~p~-~~~t~~~i~~~~~~l~~~l~~~~~~  403 (406)
T PRK12381        368 A---------------------------GPNVVRFAPA-LNISEEEITTGLDRFARACERFVSR  403 (406)
T ss_pred             C---------------------------CCCEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHHhc
Confidence            0                           1357999988 5    33444555666666655443

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.83  E-value=9.8e-20  Score=176.18  Aligned_cols=159  Identities=17%  Similarity=0.216  Sum_probs=128.7

Q ss_pred             CCChhHHHHHHHHHHHhCCCeEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           96 HFNPTVLNLSRQMAALEGTEAAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ......+++++.+|+++|++.+++ |+|   +++++.+++.+++++||+|++++++|.++...+.     ..|.++.+++
T Consensus        56 ~~~g~i~~~~~~~A~~~ga~~~~~~~~G---st~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~-----~~g~~~~~v~  127 (294)
T cd00615          56 DPTGPIKEAQELAARAFGAKHTFFLVNG---TSSSNKAVILAVCGPGDKILIDRNCHKSVINGLV-----LSGAVPVYLK  127 (294)
T ss_pred             CCChHHHHHHHHHHHHhCCCCEEEEcCc---HHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHH-----HCCCEEEEec
Confidence            345568999999999999988765 899   9999999999999999999999999999887775     3577777764


Q ss_pred             C-----------CCHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCC------Cc
Q 013079          175 I-----------SDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVL------SP  235 (450)
Q Consensus       175 ~-----------~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~------~~  235 (450)
                      .           .|++++++++.. +++++|++++| |++|.+.|+++|+++|+++|+++|+|++|+ .+.+      +.
T Consensus       128 ~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~  206 (294)
T cd00615         128 PERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA  206 (294)
T ss_pred             CccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcch
Confidence            3           278999999832 47899999988 789999999999999999999999999983 3322      22


Q ss_pred             cCCCCeEEEeCCCCccccCccceEEEEEcC
Q 013079          236 ARLGADVVVHSISKFISGGADIIAGAVCGP  265 (450)
Q Consensus       236 ~~~g~di~~~S~sK~~g~~g~~igG~l~~~  265 (450)
                      ...++|+++.|+||++++.  +.||++..+
T Consensus       207 ~~~~~div~~S~hK~l~g~--~~~~~l~~~  234 (294)
T cd00615         207 AMAGADIVVQSTHKTLPAL--TQGSMIHVK  234 (294)
T ss_pred             hhcCCcEEEEchhcccchH--hHHHHHHhC
Confidence            3348999999999998643  334555443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.83  E-value=1e-18  Score=165.01  Aligned_cols=259  Identities=22%  Similarity=0.290  Sum_probs=173.3

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEE-eCCCchhHHHHHH------HhCCCccCee
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVA-ARTLYGGTHALLT------HFFPRACNIT  169 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~-~~~~y~~~~~~~~------~~~~~~~g~~  169 (450)
                      .+.-++.+++..|+.+|+|.+++-+.+.|||+|+.++|.++++|||+++. +..-|......+-      ..+.. +|+.
T Consensus        52 ~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e-~Gi~  130 (403)
T PF06838_consen   52 DDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKE-FGIK  130 (403)
T ss_dssp             T-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGG-GT-E
T ss_pred             CCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHH-hCce
Confidence            36688999999999999999999888888999999999999999999885 5566887777662      11223 5888


Q ss_pred             EEEeCCC-----CHHHHHHhhhcCCceEEEEe----cCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCCCCC--CCcc
Q 013079          170 TTFVDIS-----DHEMVNSAIVQGRTKVLYFE----SISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLV--LSPA  236 (450)
Q Consensus       170 v~~v~~~-----d~~~l~~ai~~~~t~lv~i~----~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~--~~~~  236 (450)
                      ...++..     |++.+++++ +++||+|+|.    ....|.-++.+|+++.+++|+.  +++++||++|++|.  ..|.
T Consensus       131 Y~~v~L~~dg~~D~~~i~~~~-~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~  209 (403)
T PF06838_consen  131 YREVPLTEDGTIDWEAIKKAL-KPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT  209 (403)
T ss_dssp             EEE--B-TTSSB-HHHHHHHH-HTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG
T ss_pred             eEEEeecCCCCcCHHHHHHhh-ccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc
Confidence            8888754     899999999 7899999997    3455677777888888888874  89999999999886  4688


Q ss_pred             CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013079          237 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL  314 (450)
Q Consensus       237 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~  314 (450)
                      +.|+|++.+|+-|..|+.-.+.|||+++++++++.......  +.....|.++...  ....+++-.-+....+..+-+.
T Consensus       210 ~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTaPGiG~e~G~t~~~~--R~~~QGlFlAP~vV~eAlKgai  287 (403)
T PF06838_consen  210 EVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTAPGIGKEVGATLGTN--RLMFQGLFLAPHVVGEALKGAI  287 (403)
T ss_dssp             GGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-TTTGGGSS--TTTH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcCCccccccccCcchH--HHHHhHHhhchHHHHHHHHHHH
Confidence            88999999999999998766789999999999988754422  2223344444322  1122233223444455566666


Q ss_pred             HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          315 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       315 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ..+..++++|+++. |.. +.+..             --+-++.|.+.+....|++.++.
T Consensus       288 f~A~~fe~lG~~v~-P~~-~~~R~-------------DiIQai~l~~~e~l~~FC~~iQ~  332 (403)
T PF06838_consen  288 FAAALFEKLGFEVS-PKP-DDPRS-------------DIIQAIELGSPEKLIAFCQGIQA  332 (403)
T ss_dssp             HHHHHHHHTT-EEE-S-T-TS--S-------------SS-EEEE-SSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcCC-CCC-CCCCC-------------ceEEEEECCCHHHHHHHHHHHHh
Confidence            77777888999875 332 11221             12788999999999999999884

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.83  E-value=1.6e-18  Score=178.45  Aligned_cols=165  Identities=19%  Similarity=0.205  Sum_probs=125.4

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEe-cChHHHHHHHHHH---HH-HhccCCC----EEEEeCCCchhHHHHHHHhCCCccCe
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCT-ASDKAGMSAISSV---LM-QLCSSGG----HVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~t-sg~~~gt~ai~~a---l~-~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      .+.+.++++.+++++|.+.+.++ ++   |+.+...+   ++ .+..+||    +|+++.+.|+.+...+.     ..|+
T Consensus       112 lel~~~~~~~la~l~G~~~~~l~~~~---GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~-----~~G~  183 (481)
T PRK04366        112 LELMYELQEWLKEITGMDAVTLQPAA---GAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAA-----MAGF  183 (481)
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEeCc---HHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHH-----HcCC
Confidence            35678899999999998765444 44   54443332   22 2345665    99999999999988764     3688


Q ss_pred             eEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-cCHHHHHHHHHhcCCEEEEeCCC-CC-C-CCCccCCC
Q 013079          169 TTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTF-SP-L-VLSPARLG  239 (450)
Q Consensus       169 ~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~-~~-~-~~~~~~~g  239 (450)
                      +++.++.+     |+++|++++ +++|++|++++|| +||.+ .|+++|+++|+++|+++|+|+++ .. + ..++.++|
T Consensus       184 ~vv~v~~~~~~~~D~e~L~~~i-~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~G  261 (481)
T PRK04366        184 KVVEIPSNEDGLVDLEALKAAV-GEDTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMG  261 (481)
T ss_pred             EEEEeecCCCCCcCHHHHHhhc-ccCCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccC
Confidence            88887653     889999999 8899999999987 99987 58999999999999999999997 22 2 24677889


Q ss_pred             CeEEEeCCCCccccC---ccceEEEEEcCHHHHHHH
Q 013079          240 ADVVVHSISKFISGG---ADIIAGAVCGPANLVNSM  272 (450)
Q Consensus       240 ~di~~~S~sK~~g~~---g~~igG~l~~~~~~~~~l  272 (450)
                      +|++++|.||++++|   |.+-+|+++.++++...+
T Consensus       262 aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l  297 (481)
T PRK04366        262 FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFL  297 (481)
T ss_pred             CCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhC
Confidence            999999999998744   222237887777666544

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.83  E-value=6.8e-18  Score=171.33  Aligned_cols=211  Identities=16%  Similarity=0.159  Sum_probs=159.9

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh---------ccCCCEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL---------CSSGGHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l---------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      .+...++++.+|+++|.+.+++|+|   |++|+.+++.++         +++||+||++.++|.++...+.     ..|.
T Consensus        62 G~~~~~fe~~lA~~~g~~~~v~~~s---Gt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~-----~~G~  133 (438)
T PRK15407         62 GRFNDAFEKKLAEFLGVRYALLVNS---GSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPII-----QNGL  133 (438)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEECC---HHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHH-----HcCC
Confidence            3568899999999999999999999   999999999876         3789999999999999987775     3677


Q ss_pred             eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCc---cCC
Q 013079          169 TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP---ARL  238 (450)
Q Consensus       169 ~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~---~~~  238 (450)
                      ++.+++.+      |++++++++ +++|++|++++   +.|...++++|.++|+++|+++|+|++| .+..++.   -.+
T Consensus       134 ~pv~vdvd~~~~~id~~~le~~i-~~~tkaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~  209 (438)
T PRK15407        134 VPVFVDVELPTYNIDASLLEAAV-SPKTKAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTF  209 (438)
T ss_pred             EEEEEecCCCcCCcCHHHHHHHc-CcCCeEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeecc
Confidence            88887653      789999999 88999999876   4677889999999999999999999998 2222222   223


Q ss_pred             CCeEEEeCCC--CccccCccceEEEEEc-CHHHHHHHHHHhhhhhh---------------------------------c
Q 013079          239 GADVVVHSIS--KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM---------------------------------L  282 (450)
Q Consensus       239 g~di~~~S~s--K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~---------------------------------~  282 (450)
                      | |+.++|++  |.+.. |.  ||+++. ++++.+.++..+.....                                 .
T Consensus       210 g-d~~~fSf~~~k~~~~-ge--GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (438)
T PRK15407        210 G-DIATLSFYPAHHITM-GE--GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSH  285 (438)
T ss_pred             C-ceEEEeCCCCCCccc-cC--ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccc
Confidence            3 88888875  55553 32  588765 45666655544331100                                 0


Q ss_pred             cC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          283 LG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       283 ~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      .|  ..++...|++.+..++.++++.++.+++++++.+.|...+
T Consensus       286 ~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~  329 (438)
T PRK15407        286 LGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLE  329 (438)
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            12  2355666777777888888888888888999999997764

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.83  E-value=7.6e-19  Score=174.43  Aligned_cols=313  Identities=11%  Similarity=0.044  Sum_probs=191.8

Q ss_pred             CccccCC-HHHHHHhhcCCCCCCC-CCccccCCCC---hhHHHHHHHHHHHhCC---CeEEEe-cChHHHHHHHHHHHHH
Q 013079           66 ATFTVME-PETMRRMFAGELGPDR-DFFIYSRHFN---PTVLNLSRQMAALEGT---EAAYCT-ASDKAGMSAISSVLMQ  136 (450)
Q Consensus        66 tt~~~~~-~~~~~~~~~~~~~n~~-~~~~y~r~~~---~~~~~l~~~iA~l~g~---~~~~~t-sg~~~gt~ai~~al~~  136 (450)
                      .+...++ .++|.+.+.. ++|+. +.|..+....   ..+++.|+.+++++++   +.++|| +|   ||+|+++++.+
T Consensus         7 p~~~p~~V~~a~~~~~~~-~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs---~T~a~~~~~~~   82 (355)
T cd00611           7 PAALPEEVLEQAQKELLD-FNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGG---ATGQFAAVPLN   82 (355)
T ss_pred             CCCCCHHHHHHHHHHHhh-cccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCC---chHHHHHHHHh
Confidence            3444444 3777776644 33443 3455553333   6689999999999996   247777 55   99999999999


Q ss_pred             hcc---CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC------C-HHHHHHhhhcCCceEEEEecCCCCccccc
Q 013079          137 LCS---SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------D-HEMVNSAIVQGRTKVLYFESISNPTLAVA  206 (450)
Q Consensus       137 l~~---~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d-~~~l~~ai~~~~t~lv~i~~~~NptG~v~  206 (450)
                      ++.   +|++|++....+.. .    ....+ .|+++++++.+      + ++..+..+ ++++++|.+.+..|.||.+.
T Consensus        83 l~~~~~~~~~i~~g~~~~~~-~----~~a~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~lV~~~h~~t~tG~~~  155 (355)
T cd00611          83 LLGDKGTADYVVTGAWSAKA-A----KEAKR-YGGVVVIVAAKEEGKYTKIPDVETWDL-APDAAYVHYCSNETIHGVEF  155 (355)
T ss_pred             cCCCCCeEEEEECCHHHHHH-H----HHHHh-cCCCcEEEecccccCCCCCCCHhhcCC-CCCCCEEEEeCCcccccEEc
Confidence            976   45566553222221 1    22233 57777777643      2 22333445 67899999999999999983


Q ss_pred             CHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh------
Q 013079          207 NIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG------  278 (450)
Q Consensus       207 ~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~------  278 (450)
                      +     ++++.+|++++||.++  +...++..+++  +++.|.+|++|++|  + |+++.++++++++......      
T Consensus       156 ~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G--~-g~l~~~~~~~~~~~~~~~~~~~~~~  225 (355)
T cd00611         156 D-----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAG--V-TVVIVRKDLLGKARKITPSMLNYKT  225 (355)
T ss_pred             c-----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCc--e-EEEEECHHHHhhcccCCCCcccHHH
Confidence            3     4455699999999998  66667766655  45567999999988  5 8888888777654321100      


Q ss_pred             --hhhccCCCchHHHHHHHHccC-----C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCC
Q 013079          279 --ALMLLGPTMNPKVAFELSERI-----P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYG  350 (450)
Q Consensus       279 --~~~~~g~~~~~~~a~~~~~~~-----~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g  350 (450)
                        ......++++....+.+...+     . .++.+.++++++++++.+.|++++. +..+..  .+..           .
T Consensus       226 ~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~g-l~~~~~--~~~~-----------r  291 (355)
T cd00611         226 HADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNG-FYRGPV--DKRA-----------R  291 (355)
T ss_pred             HHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcc-ccccCC--CHHH-----------c
Confidence              000112233322222222222     2 3556667788999999999998732 211110  1110           1


Q ss_pred             cCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013079          351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ  430 (450)
Q Consensus       351 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~  430 (450)
                      .+.+++|.+++......+++.+..   .|. .+..|          .              + ..+.||+|++ ..++.+
T Consensus       292 s~~vvsf~~~~~~l~~~~~~~~~r---~G~-~~~~~----------~--------------~-~~g~vR~S~~-~~nt~e  341 (355)
T cd00611         292 SRMNVPFRLGKEELEKEFLKEAEA---AGM-IGLKG----------H--------------R-SVGGIRASIY-NALSLE  341 (355)
T ss_pred             CceEEEEEcCChhhhHHHHHHHHH---CCC-cccCC----------C--------------c-ccCeEEEEcc-CCCCHH
Confidence            234699998864111333333322   221 12211          0              0 1368999999 999999


Q ss_pred             HHHHHHHHHHHhh
Q 013079          431 RWSQFEKALSRMQ  443 (450)
Q Consensus       431 ~i~~l~~al~~~~  443 (450)
                      +++.|.++|++++
T Consensus       342 di~~l~~al~~~~  354 (355)
T cd00611         342 GVQALADFMKEFQ  354 (355)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.82  E-value=2.2e-18  Score=154.46  Aligned_cols=287  Identities=13%  Similarity=0.144  Sum_probs=190.9

Q ss_pred             ChhHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           98 NPTVLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ++.-.+++..++.--  -++.+++..|   .-|.|.+++++.|.|| ++|+...|+|..+...+.     ..+++|+.++
T Consensus        68 d~rnk~ls~a~~~dkpLt~dnic~GvG---sDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~-----iNd~eVvkvp  139 (375)
T KOG0633|consen   68 DPRNKRLSDALAQDKPLTSDNICVGVG---SDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAA-----INDAEVVKVP  139 (375)
T ss_pred             CcccchhhhhcccCCCCCccceEEecC---cHHHHHHHHhheecCCccceeecCCcceeEEEEee-----cCCceEEEec
Confidence            344444555554432  2467888888   8999999999999999 789999999987643332     4678888877


Q ss_pred             CC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhc-CCEEEEeCCCCCCCC--Cc----cCCCCe
Q 013079          175 IS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLVL--SP----ARLGAD  241 (450)
Q Consensus       175 ~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~~--~~----~~~g~d  241 (450)
                      ..     |.|++.+.+..+ ..|++++++|+||||.+...+.|.++.+.. |.++++||+|-.|..  +-    .++..-
T Consensus       140 l~pdF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNL  219 (375)
T KOG0633|consen  140 LNPDFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNL  219 (375)
T ss_pred             CCCCccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCce
Confidence            54     788888877433 789999999999999998888888887653 789999999844422  21    233678


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARR  319 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~  319 (450)
                      +++.++||.+|..|.|+ |+-..+..+++-+......+   .-+.+....|..++.  ..+.++.......+.+.+|...
T Consensus       220 ivlqTlSKsfGLAGiRv-G~~~~~~~ia~iln~~KaPY---NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~ke  295 (375)
T KOG0633|consen  220 IVLQTLSKSFGLAGIRV-GYGAFPLSIAEILNRAKAPY---NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKE  295 (375)
T ss_pred             eehhhhhhhcCcceeEe-ecccccHHHHHHHHhccCCc---cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 99999988888777665522   223333344444443  4455666666677788889999


Q ss_pred             HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccccccccccccc
Q 013079          320 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS  397 (450)
Q Consensus       320 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~  397 (450)
                      |.+.++--.+|+-                 ...+++-+++.+.  ..+..++.++..  ..|+ -|..-+.     .+.|
T Consensus       296 Lt~v~~~~~~~gg-----------------~daNFiLi~v~~~~n~~akkly~q~at--~~gV-vVRfrgs-----e~~c  350 (375)
T KOG0633|consen  296 LTEVPFLNDYPGG-----------------SDANFILIEVTGGDNGMAKKLYKQDAT--KMGV-VVRFRGS-----EEGC  350 (375)
T ss_pred             hhcCccccCCCCc-----------------ccccEEEEEEcCCCcHHHHHHHHHHHH--hcce-EEEEcCC-----cccc
Confidence            9887652123430                 1345777777622  123334333322  1221 2221111     1112


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013079          398 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA  438 (450)
Q Consensus       398 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a  438 (450)
                                       .|++||++|..|+..-+++.|++.
T Consensus       351 -----------------~G~lRitvGt~EentvL~k~~K~~  374 (375)
T KOG0633|consen  351 -----------------KGYLRITVGTPEENTVLMKCLKQF  374 (375)
T ss_pred             -----------------ceeEEEEcCCcccchHHHHHHHhh
Confidence                             489999999556666666666543

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.82  E-value=8.6e-18  Score=160.94  Aligned_cols=277  Identities=17%  Similarity=0.207  Sum_probs=189.5

Q ss_pred             eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC----CHHHHHHhhhc----
Q 013079          116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQ----  187 (450)
Q Consensus       116 ~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~----d~~~l~~ai~~----  187 (450)
                      .+++|+|   .|.++..+++.++..||+|++...+|.+....++     ..|+.+..|+.+    ++|.|++.+.+    
T Consensus       126 diiit~G---~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~-----a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~  197 (472)
T KOG0634|consen  126 DIIITNG---NTDGLFKVLRTLINRGDHVLIEEYTYPSALQSME-----ALGVKIIPVKMDQDGIDPESLEEILSNWKPG  197 (472)
T ss_pred             eEEEecC---CchHHHHHHHHhhcCCCceEEecccchHHHHhcc-----ccCceEEeccccCCCCCHHHHHHHHhcCCcc
Confidence            4799999   9999999999999999999999999999887765     368787777765    78888887632    


Q ss_pred             ----CCceEEE-EecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-------------------------
Q 013079          188 ----GRTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-------------------------  234 (450)
Q Consensus       188 ----~~t~lv~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-------------------------  234 (450)
                          ++.+++| |.+-+||||....   .++|.++|++|++++|+|+.|.-+.+.                         
T Consensus       198 ~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~s  277 (472)
T KOG0634|consen  198 SYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPS  277 (472)
T ss_pred             cccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCC
Confidence                2355555 5678999999876   459999999999999999997322111                         


Q ss_pred             ccCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc------CCcHHHH
Q 013079          235 PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------IPHLGLR  305 (450)
Q Consensus       235 ~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~------~~~l~~~  305 (450)
                      ++.+   |.++-..||||.++ ||.|+ ||+.+++.+++++..... ..+...+..++......+..      ++++...
T Consensus       278 flslDtdGrVIr~dSFSKiia-PGlRl-G~it~~~~~l~ril~~ae-~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l  354 (472)
T KOG0634|consen  278 FLSLDTDGRVIRNDSFSKIIA-PGLRL-GWITGNSLFLKRILDLAE-VATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHL  354 (472)
T ss_pred             cccccccccEEeccchhhhhc-Cccee-EEeecCHHHHHHHhhhcc-eeecCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111   67899999999999 89999 999999988888765543 22233444555555544432      2445555


Q ss_pred             HHHHHHHHHHHHHHHHhC-CC---eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHHHHHHHHhh
Q 013079          306 MKEHCHRALIFARRMKKL-GL---KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKANRLMNYLQ  373 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~-~~---~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~~~~~~~l~  373 (450)
                      ...|..++..+...|.+. +.   ++..|.                   .|.++||+++        +..+.+.++....
T Consensus       355 ~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~-------------------aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~  415 (472)
T KOG0634|consen  355 RSSYTERRNALLSALDKYLPKSVCEYHPPK-------------------AGMFIWVEIPYINFDTKKSINQIEEIIFIKA  415 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCeeEEecCC-------------------cceEEEEEecccccccccchHHHHHHHHHHH
Confidence            556788888888888774 43   333332                   7889999995        4444555544433


Q ss_pred             ccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          374 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       374 ~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .  .+| +-+-.|+.....  |...              -+.-++|+|+. ..+.+++.+.+++--..+
T Consensus       416 v--k~g-V~~v~G~~F~v~--p~~s--------------~~kiffRls~a-~a~~e~l~~g~~rf~~~i  464 (472)
T KOG0634|consen  416 V--KNG-VKLVCGSWFMVD--PESS--------------WSKIFFRLSIA-FAEPEKLDEGIERFGSVI  464 (472)
T ss_pred             H--HCC-eEEecCceeEEc--CccC--------------CCcceEEEEee-cCCHHHHHHHHHHHHHHH
Confidence            2  234 333445433221  1111              01248999999 877776665555443333

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.82  E-value=2.2e-17  Score=160.87  Aligned_cols=226  Identities=18%  Similarity=0.216  Sum_probs=167.7

Q ss_pred             CCChhHHHHHHHHHHHhCCC--e-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079           96 HFNPTVLNLSRQMAALEGTE--A-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~--~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      .......++.+.+..+++.+  . .++++|   ||.|+.+++.++++|||+|++......+..  +.+...+ +|.+++.
T Consensus        35 ~F~~~~~~~~~~L~~v~~t~~~~~~ll~gs---Gt~amEAav~sl~~pgdkVLv~~nG~FG~R--~~~ia~~-~g~~v~~  108 (383)
T COG0075          35 DFVGIMKEVLEKLRKVFGTENGDVVLLSGS---GTLAMEAAVASLVEPGDKVLVVVNGKFGER--FAEIAER-YGAEVVV  108 (383)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcEEEEcCC---cHHHHHHHHHhccCCCCeEEEEeCChHHHH--HHHHHHH-hCCceEE
Confidence            34556788888888888876  3 466778   999999999999999999998887766543  2244444 7777777


Q ss_pred             eCCC-----CHHHHHHhhh-cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEE
Q 013079          173 VDIS-----DHEMVNSAIV-QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVV  244 (450)
Q Consensus       173 v~~~-----d~~~l~~ai~-~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~  244 (450)
                      ++..     |++++++++. .++.++|.+.+.-.+||...|+++|+++|++||.++|||.+-  +...+++.++|+|+++
T Consensus       109 ~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~i  188 (383)
T COG0075         109 LEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAI  188 (383)
T ss_pred             EeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEE
Confidence            7654     9999999994 256789999888889999999999999999999999999984  6777888899999999


Q ss_pred             eCCCCccccCccceEEEEEcCHHHHHHHHHH------------hh-----hhhhccCCCchHHHHHHHHccC--CcHHHH
Q 013079          245 HSISKFISGGADIIAGAVCGPANLVNSMMDL------------HQ-----GALMLLGPTMNPKVAFELSERI--PHLGLR  305 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~------------~~-----~~~~~~g~~~~~~~a~~~~~~~--~~l~~~  305 (450)
                      .+..|+++.|.. + |++..+++.++.+...            ..     +....+.++....+...+++.+  +-++.+
T Consensus       189 tgSQK~l~~PPG-l-a~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r  266 (383)
T COG0075         189 TGSQKALGAPPG-L-AFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEAR  266 (383)
T ss_pred             ecCchhccCCCc-c-ceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999996543 4 7787777665554321            11     1111122222222222222222  337889


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeeC
Q 013079          306 MKEHCHRALIFARRMKKLGLKVLY  329 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~~v~~  329 (450)
                      .++|+++++.+++.++++|+++..
T Consensus       267 ~~RH~~~~~a~r~~~~alGl~~~~  290 (383)
T COG0075         267 IARHRRLAEALRAGLEALGLELFA  290 (383)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcccc
Confidence            999999999999999999986543

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.82  E-value=6.8e-18  Score=170.60  Aligned_cols=289  Identities=15%  Similarity=0.178  Sum_probs=189.4

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc---------cC-CCEEEEeCCCchhH-HHHHHHhCC--
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC---------SS-GGHVVAARTLYGGT-HALLTHFFP--  163 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~---------~~-gd~Vi~~~~~y~~~-~~~~~~~~~--  163 (450)
                      ..+...++++.|+++++.+.++|++|   |++|+..+++.+.         .+ .++|++....|++. ...+.....  
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~~~~~S---Gs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~  153 (401)
T TIGR01885        77 YNDVFGEFAEYVTKLFGYDKVLPMNT---GAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPD  153 (401)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEeCc---cHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcc
Confidence            45778999999999999889999999   9999999998742         12 35778888888763 333321000  


Q ss_pred             --CccC---eeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          164 --RACN---ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       164 --~~~g---~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                        ...+   ..+..++..|+++|++++++  +++.+|++|++++++|.+.|    +++|.++|++||+++|+||+|.++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g  233 (401)
T TIGR01885       154 SRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLG  233 (401)
T ss_pred             cccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence              0011   13455566789999988832  46789999999999999987    9999999999999999999985443


Q ss_pred             CC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHH
Q 013079          233 LS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR  305 (450)
Q Consensus       233 ~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~  305 (450)
                      ..       ......|+++  ++|.++++++++ |+++.++++++.+..... ..+..++.+.+.++..++..++. ...
T Consensus       234 ~~G~~~~~~~~~~~~di~~--~gK~l~~g~~~i-g~v~~~~~i~~~~~~~~~-~~t~~~~p~~~~aa~a~L~~i~~-~~l  308 (401)
T TIGR01885       234 RTGKLLCVDHENVKPDIVL--LGKALSGGVYPV-SAVLADDDVMLTIKPGEH-GSTYGGNPLACAVAVAALEVLEE-EKL  308 (401)
T ss_pred             ccchhhHHhhcCCCCCEEE--eeccccCCCCCc-EEEEEcHHHHhhccCCCC-CCCCCCCHHHHHHHHHHHHHHHh-ccH
Confidence            11       1223567776  669999877888 888888888877653222 11233444443344333332221 122


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---HHHHHHHHHhhccccccccc
Q 013079          306 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---EKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---~~~~~~~~~l~~~~~~g~i~  382 (450)
                      .++..++.+++.+.|++++..+..                 ...|.|.++.+.++..   ..+..+...|..   .| +.
T Consensus       309 ~~~~~~~~~~~~~~L~~l~~~~~~-----------------~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~---~G-v~  367 (401)
T TIGR01885       309 AENAEKLGEIFRDQLKKLPKPIIT-----------------EVRGRGLLNAIVIDESKTGRTAWDLCLKLKE---KG-LL  367 (401)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcee-----------------EEeecCeeEEEEeccCcchhHHHHHHHHHHh---CC-EE
Confidence            345566678888888876432110                 0114677888888632   246677777764   23 22


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ++.                           ..++.|||+.. ...+++.++.+.++|++.
T Consensus       368 v~~---------------------------~~~~~lRi~p~-l~~t~~~i~~~l~~l~~~  399 (401)
T TIGR01885       368 AKP---------------------------THGNIIRLAPP-LVITEEQLDEGLEIIKKV  399 (401)
T ss_pred             EEe---------------------------cCCCEEEEeCC-ccCCHHHHHHHHHHHHHH
Confidence            211                           01467999988 766677777776666543

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.81  E-value=5.9e-18  Score=167.91  Aligned_cols=292  Identities=11%  Similarity=0.037  Sum_probs=189.3

Q ss_pred             CCccccCCCC---hhHHHHHHHHHHHhCC-C--eEEEe-cChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHh
Q 013079           89 DFFIYSRHFN---PTVLNLSRQMAALEGT-E--AAYCT-ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF  161 (450)
Q Consensus        89 ~~~~y~r~~~---~~~~~l~~~iA~l~g~-~--~~~~t-sg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~  161 (450)
                      +.+..+....   ...+++++.++++++. +  .++++ +|   |+.++.+++..++.+|+++++......+...  .+.
T Consensus        35 g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gs---gt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~--~~~  109 (360)
T PRK05355         35 SVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGG---ASLQFAMVPMNLLGGGKKADYVDTGSWSKKA--IKE  109 (360)
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCC---chHHHHHHHHhcCCCCCeEEEEECCHHHHHH--HHH
Confidence            3344454444   6789999999999995 3  35555 66   9999999999999999888776655544433  123


Q ss_pred             CCCccCeeEEEeCCC------CHHHHHH-hhhcCCceEEEEecCCCCccccc-CHHHHHHHHHhcCCEEEEeCCC--CCC
Q 013079          162 FPRACNITTTFVDIS------DHEMVNS-AIVQGRTKVLYFESISNPTLAVA-NIPELSRLAHDKGVTVVVDNTF--SPL  231 (450)
Q Consensus       162 ~~~~~g~~v~~v~~~------d~~~l~~-ai~~~~t~lv~i~~~~NptG~v~-~l~~I~~la~~~gi~livD~~~--~~~  231 (450)
                      ..+ .|.. ..+..+      +..++++ ++ ++++++|++.+..+.||.+. |+.+|      +|++++||.++  +..
T Consensus       110 a~~-~g~~-~~~~~~~~~g~~~~~~~~~~~l-~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~  180 (360)
T PRK05355        110 AKK-YGEV-NVAASSEDDGFTYIPPLDEWQL-SDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSR  180 (360)
T ss_pred             HHH-hCCc-eEEecccccCCCCCCChhhccC-CCCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCc
Confidence            333 4543 332211      2234444 67 66899999999999999998 77776      89999999998  556


Q ss_pred             CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH-h------hhhh-hccCCCchHHHHHH---HHccC-
Q 013079          232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL-H------QGAL-MLLGPTMNPKVAFE---LSERI-  299 (450)
Q Consensus       232 ~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~-~------~~~~-~~~g~~~~~~~a~~---~~~~~-  299 (450)
                      .++..++  |+++.|.+|++|++|  + |+++.+++.++++... .      .... .....+++....+.   ++..+ 
T Consensus       181 ~idv~~~--d~~~~ssqK~lgP~G--l-g~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~  255 (360)
T PRK05355        181 PIDVSKF--GLIYAGAQKNIGPAG--L-TIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLK  255 (360)
T ss_pred             cCCHHHc--cEEEEeccccccCCc--e-EEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHH
Confidence            6666554  599999999999888  5 8898888877654331 0      0000 01122333222222   22211 


Q ss_pred             -C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccc
Q 013079          300 -P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQ  377 (450)
Q Consensus       300 -~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~  377 (450)
                       . .++.+.+++.++++++.+.|++++.......    +..           ..+.+++|.+++......++..+..   
T Consensus       256 ~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~----~~~-----------rs~~v~sf~~~~~~~~~~~~~~~~~---  317 (360)
T PRK05355        256 EQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVA----PED-----------RSRMNVPFTLADEELDKKFLAEAKA---  317 (360)
T ss_pred             HccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----hhh-----------cCCcEEEEEcCChHHHHHHHHHHHH---
Confidence             2 4667778889999999999999874111110    110           1235899999875333455555442   


Q ss_pred             ccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          378 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       378 ~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      .|. .+..|.          .               ..+.||+|++ ..++.++++.|.++|+++..
T Consensus       318 ~Gi-~~~~~~----------~---------------~~g~vRiS~~-~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        318 AGL-VGLKGH----------R---------------SVGGMRASIY-NAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             CCC-cccCCC----------C---------------ccCcEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence            221 112220          0               1478999999 99999999999999988754

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.81  E-value=2.6e-18  Score=186.02  Aligned_cols=293  Identities=18%  Similarity=0.202  Sum_probs=197.7

Q ss_pred             hhHHHHHHHHHHHhCCCeEEEecChHHHH----HHHHHHHHHhccC-CC----EEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALEGTEAAYCTASDKAGM----SAISSVLMQLCSS-GG----HVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~~~tsg~~~gt----~ai~~al~~l~~~-gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ..+.++++.+++++|.+.+.|+++   ++    +|++++++++.++ ||    +||++..+|++....+.     ..|++
T Consensus       568 ~~~~~~r~~la~i~g~~~v~f~pn---aga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~-----~~G~~  639 (993)
T PLN02414        568 EMFEDLGDLLCEITGFDSFSLQPN---AGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAA-----MCGMK  639 (993)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEcCC---CcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHH-----HCCCE
Confidence            356899999999999999999999   77    8999999999866 87    89999999999988875     26889


Q ss_pred             EEEeCCC-----CHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CC-CCCCccCC
Q 013079          170 TTFVDIS-----DHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SP-LVLSPARL  238 (450)
Q Consensus       170 v~~v~~~-----d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~-~~~~~~~~  238 (450)
                      +++++.+     |+++|++++ +   ++|++|++++|+|-+|...|+++|+++||++|+++++|.++  +. ...+|.++
T Consensus       640 vv~v~~d~~G~vDle~L~~~i-~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~  718 (993)
T PLN02414        640 IVVVGTDAKGNINIEELRKAA-EAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFI  718 (993)
T ss_pred             EEEeccCCCCCcCHHHHHHHH-hccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCcccc
Confidence            9998864     899999999 5   47899999999999999999999999999999999999998  33 33567789


Q ss_pred             CCeEEEeCCCCccccC---ccc-eEEEEEcCHHHHHHHHHHh--h-h------hhhccCCC--------chHHHHHH--H
Q 013079          239 GADVVVHSISKFISGG---ADI-IAGAVCGPANLVNSMMDLH--Q-G------ALMLLGPT--------MNPKVAFE--L  295 (450)
Q Consensus       239 g~di~~~S~sK~~g~~---g~~-igG~l~~~~~~~~~l~~~~--~-~------~~~~~g~~--------~~~~~a~~--~  295 (450)
                      |+|++++|.||++++|   |.+ + |+++.++.+...+-...  . .      .....|..        .....++.  .
T Consensus       719 GaD~~~~s~HK~f~~P~G~GGPg~-G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~  797 (993)
T PLN02414        719 GADVCHLNLHKTFCIPHGGGGPGM-GPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIA  797 (993)
T ss_pred             CCCEEEecCCccCCcCcccCCCCe-eeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHH
Confidence            9999999999965522   112 4 88888876654432110  0 0      00011221        11112222  2


Q ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-eCC--HHHHHHHHHHh
Q 013079          296 SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-MET--EEKANRLMNYL  372 (450)
Q Consensus       296 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-l~~--~~~~~~~~~~l  372 (450)
                      ..+.+.+.+..++...+++++.++|.+ +..+.+++-.+.-.|+             .++.+. ++.  ...+..+.++|
T Consensus       798 ~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hE-------------fv~~~~~l~~~~g~~~~di~krL  863 (993)
T PLN02414        798 MMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHE-------------FIIDLRPFKNTAGIEPEDVAKRL  863 (993)
T ss_pred             HHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeee-------------EEEeccccccccCCCHHHHHHHH
Confidence            223344555555667788999999977 3333333211100111             122222 221  11235566666


Q ss_pred             hccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          373 QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       373 ~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      ..   +|+.+....       .|                 . .+.+||++. ..+..+++|.|.+++..+.+
T Consensus       864 ~d---~Gihapt~~-------~p-----------------v-~~~lmiepT-E~~skeelDrf~~al~~i~~  906 (993)
T PLN02414        864 MD---YGFHAPTMS-------WP-----------------V-PGTLMIEPT-ESESKAELDRFCDALISIRE  906 (993)
T ss_pred             HH---cCcEEeeec-------cc-----------------c-CCEEEEEee-eeCCHHHHHHHHHHHHHHHH
Confidence            53   342221100       01                 1 578999999 87888888888888876643

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.81  E-value=8e-18  Score=168.49  Aligned_cols=285  Identities=13%  Similarity=0.056  Sum_probs=184.5

Q ss_pred             CChhHHHHHHHHHHHhCCC---eEEEec-ChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCe-eEE
Q 013079           97 FNPTVLNLSRQMAALEGTE---AAYCTA-SDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI-TTT  171 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~---~~~~ts-g~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~-~v~  171 (450)
                      .....++.++.+++++++.   .++|++ |   ||+++++++.+++++++.+++..-+|+.-...  ....+ .|+ +++
T Consensus        46 f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs---~T~~~~~~~~~l~~~~~~~vi~~g~f~~~~~~--~~~~~-~g~~~v~  119 (378)
T PRK03080         46 VKALLKRVIEGTRELLSLPEGYEVGIVPGS---DTGAWEMALWSLLGARRVDHLAWESFGSKWAT--DVVKQ-LKLEDPR  119 (378)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEECCc---hHHHHHHHHHhcCCCCcceEEEeCHHHHHHHH--HHHhh-cCCCCce
Confidence            3567899999999999962   577775 8   99999999999887433334445567663322  11122 577 777


Q ss_pred             EeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEE
Q 013079          172 FVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVV  244 (450)
Q Consensus       172 ~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~  244 (450)
                      .++.+     |+++    + +. +++|++.+..|.||.+.|+++|++  +++|+++++|.++  +...++..+  +|+++
T Consensus       120 ~~~~~~g~~~d~~~----i-~~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~  189 (378)
T PRK03080        120 VLEADYGSLPDLSA----V-DF-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYT  189 (378)
T ss_pred             EeccCCCCCCCHhh----c-CC-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEE
Confidence            76543     4443    4 32 677999999999999999999999  8899999999998  556666554  69999


Q ss_pred             eCCCCcccc-CccceEEEEEcCHHHHHHHHHHhhhh---------------h-hc---cCCCchHHHH---HHHHccC--
Q 013079          245 HSISKFISG-GADIIAGAVCGPANLVNSMMDLHQGA---------------L-ML---LGPTMNPKVA---FELSERI--  299 (450)
Q Consensus       245 ~S~sK~~g~-~g~~igG~l~~~~~~~~~l~~~~~~~---------------~-~~---~g~~~~~~~a---~~~~~~~--  299 (450)
                      .|.||++++ +|  + |+++.+++.++.+.....++               . ..   +.++++....   ..++..+  
T Consensus       190 ~s~~K~l~~P~G--~-g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~  266 (378)
T PRK03080        190 FSWQKVLGGEGG--H-GMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANS  266 (378)
T ss_pred             EehhhhCCCCCc--e-EEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHH
Confidence            999999975 66  4 88988888876654321000               0 00   1122222222   1122211  


Q ss_pred             C-cHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHhhc
Q 013079          300 P-HLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQN  374 (450)
Q Consensus       300 ~-~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~~~~~l~~  374 (450)
                      . .++.+.+++.++.+++.+.|++++. .+..+. +   .           ...+.+++|.+++   .. ...++..+..
T Consensus       267 ~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~-~---~-----------~~s~~i~~~~~~~~~~~~-~~~~~~~l~~  330 (378)
T PRK03080        267 IGGLDALIARTAANASVLYDWAEKTPWATPLVAD-P---A-----------TRSNTSVTLDFVDAQAAV-DAAAVAKLLR  330 (378)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCC-c---c-----------ccCccEEEEEcCCchHHH-HHHHHHHHHH
Confidence            1 3455667778888899999988864 333211 1   1           0123589998886   22 2235555533


Q ss_pred             cccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      .+    +.+..|+.+.                       ..+.+|+|++ ..++.++++.|.++|+++.+
T Consensus       331 ~~----i~v~~g~~~~-----------------------~~~~vRis~~-~~~t~~di~~l~~al~~~~~  372 (378)
T PRK03080        331 EN----GAVDIEPYRD-----------------------APNGLRIWCG-PTVEPADVEALTPWLDWAFE  372 (378)
T ss_pred             cC----CeeccccccC-----------------------CCCcEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence            11    4444443210                       1367999999 88888888888888877543

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.81  E-value=1.2e-17  Score=164.98  Aligned_cols=307  Identities=11%  Similarity=0.054  Sum_probs=199.5

Q ss_pred             HHHHHHhhcCCCCCC-CCCccccCCCC---hhHHHHHHHHHHHhCC-C--eEEEe-cChHHHHHHHHHHHHHhccCCCEE
Q 013079           73 PETMRRMFAGELGPD-RDFFIYSRHFN---PTVLNLSRQMAALEGT-E--AAYCT-ASDKAGMSAISSVLMQLCSSGGHV  144 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~-~~~~~y~r~~~---~~~~~l~~~iA~l~g~-~--~~~~t-sg~~~gt~ai~~al~~l~~~gd~V  144 (450)
                      ++++.+++...- |. .+.|..+....   ...+++++.++++++. +  .++|+ +|   ||+|+++++..++.+|+++
T Consensus         8 ~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gs---gT~a~ea~~~nl~~~~~~~   83 (349)
T TIGR01364         8 LEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGG---ATGQFAAVPLNLLAEGKVA   83 (349)
T ss_pred             HHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCC---chHHHHHHHHhcCCCCCeE
Confidence            466776665432 32 34566666655   6789999999999995 2  36555 66   9999999999999889988


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeC---------CCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHH
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVD---------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA  215 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~---------~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la  215 (450)
                      ++......+...  .....+ .|. +..+.         ..++++++  + ++++++|++.+..+.||...+     +++
T Consensus        84 l~i~~G~fg~r~--~~~a~~-~g~-~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~th~ETstGv~~~-----~l~  151 (349)
T TIGR01364        84 DYIVTGAWSKKA--AKEAKK-YGV-VNVVASGKEGNYTKIPDPSTWE--I-SEDAAYVHYCANETIHGVEFR-----ELP  151 (349)
T ss_pred             EEEECCHHHHHH--HHHHHH-hCC-cEEEeccccCCCCCCCCHHhcC--C-CCCCCEEEEcCCCCcccEecc-----eec
Confidence            877666555443  233333 566 44333         22555444  3 568999999999999999876     667


Q ss_pred             HhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH-------hhhh-hhccCC
Q 013079          216 HDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL-------HQGA-LMLLGP  285 (450)
Q Consensus       216 ~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~-------~~~~-~~~~g~  285 (450)
                      +.++++++||.++  +...++..++  |+++.|.+|++||+|  + |+++.+++.++++...       .... ......
T Consensus       152 ~~~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~lgP~G--l-g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (349)
T TIGR01364       152 DVKNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNIGPAG--L-TVVIVRKDLLGRASRITPSMLNYKIHAENDSMYN  226 (349)
T ss_pred             ccCCCeEEEEccccccCccCCHHHc--cEEEEecccccCCCc--e-EEEEECHHHHhhcccCCCCcchHHHHHhcCCCCC
Confidence            7789999999997  6666666654  599999999999888  5 8888888877655221       1000 001112


Q ss_pred             CchHHHHHH---HHccC--C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          286 TMNPKVAFE---LSERI--P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       286 ~~~~~~a~~---~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                      +++....+.   ++..+  + .++.+.+++.++++++.+.|++++. +..+...  |..           ..+.+++|.+
T Consensus       227 Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~g-l~~~~~~--~~~-----------rs~~v~sf~~  292 (349)
T TIGR01364       227 TPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNG-FYRNPVD--PRN-----------RSRMNVVFTL  292 (349)
T ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCC-eeccCCC--HHH-----------cCCeEEEEec
Confidence            333222222   22211  2 3667778889999999999999853 2112110  110           1235799998


Q ss_pred             CCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          360 ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       360 ~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                      ++......++..+..   .| +++..|..                         ..+.||+|++ ..++.++++.|.++|
T Consensus       293 ~~~~~~~~~~~~~~~---~G-i~~~~~~~-------------------------~~g~vRvS~~-~~nt~edid~l~~al  342 (349)
T TIGR01364       293 GNEELEKRFLKEAEE---RG-LVSLKGHR-------------------------SVGGMRASIY-NAMPLEGVQALVDFM  342 (349)
T ss_pred             CChhHhHHHHHHHHH---CC-CcccCCcc-------------------------ccCeeEEECc-CCCCHHHHHHHHHHH
Confidence            854222455454433   23 23222210                         1368999999 999999999999999


Q ss_pred             HHhhh
Q 013079          440 SRMQD  444 (450)
Q Consensus       440 ~~~~~  444 (450)
                      +++.+
T Consensus       343 ~~~~~  347 (349)
T TIGR01364       343 KEFQK  347 (349)
T ss_pred             HHHHH
Confidence            98754

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.80  E-value=3.3e-17  Score=164.82  Aligned_cols=282  Identities=16%  Similarity=0.160  Sum_probs=177.4

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHH----HHHHHHHHHhCCCeE-EEecChHHHHHHHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVL----NLSRQMAALEGTEAA-YCTASDKAGMSAISSVL  134 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~----~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al  134 (450)
                      .+.+|..++.+.+ +.+-..+...|..-..+..|= .+...++    .+.++..+++|++.+ +=.-|   |+.|+.+++
T Consensus        53 ~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy-~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~S---g~~An~~v~  128 (493)
T PRK13580         53 KLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFY-AGCQNVDTVEWEAAEHAKELFGAEHAYVQPHS---GADANLVAF  128 (493)
T ss_pred             eEecccccCCHHHHHHhcccccccCcCCCCCcccc-CCCchHHHHHHHHHHHHHHHhCCCcccccCCC---cHHHHHHHH
Confidence            4567777776654 555555555443211112221 1233333    344556668898876 44456   899999999


Q ss_pred             HHhccC-------------------------------CCEEEEeCCCchhHHHHHHHhCCCccC--eeEEEeCC------
Q 013079          135 MQLCSS-------------------------------GGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI------  175 (450)
Q Consensus       135 ~~l~~~-------------------------------gd~Vi~~~~~y~~~~~~~~~~~~~~~g--~~v~~v~~------  175 (450)
                      .++++|                               ||+|+..+..+++....-  ......|  ..+..+++      
T Consensus       129 ~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg--~~~n~~~~~~~~~~y~vd~~~g~  206 (493)
T PRK13580        129 WAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHG--FRPNISGKMFHQRSYGVDPDTGL  206 (493)
T ss_pred             HHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecC--cccchhhheeeeEecccCcccCc
Confidence            999876                               799998887775543221  0000011  23333322      


Q ss_pred             CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCC-------CccCCCCeEEEeC
Q 013079          176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVL-------SPARLGADVVVHS  246 (450)
Q Consensus       176 ~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~-------~~~~~g~di~~~S  246 (450)
                      .|.+++++.+ +++++.|++...+|- +.+.|+++|.++|+++|+++++|+++  +.+..       ++. .++|++++|
T Consensus       207 iD~d~l~~~~-~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~-~~~D~vtgT  283 (493)
T PRK13580        207 LDYDEIAALA-REFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPV-PHADIVTTT  283 (493)
T ss_pred             cCHHHHHHHH-hhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCC-CCCcEEEeC
Confidence            2889999999 778888888888887 55889999999999999999999998  33321       222 268999999


Q ss_pred             CCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHH-HHccC--CcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          247 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       247 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      +||++.++.   ||++++++++++.+...+.  ....++.+...++.. ++...  ....++.++..++.++|++.|++.
T Consensus       284 ~hKaL~GP~---GG~I~~~~~l~~~L~~a~P--~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~  358 (493)
T PRK13580        284 THKTLRGPR---GGLVLAKKEYADAVDKGCP--LVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR  358 (493)
T ss_pred             ChhhccCCC---eEEEEecHHHHHHHhhCCC--cccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            999995443   5999999888888753332  122333333322222 22221  223456777899999999999999


Q ss_pred             CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH-HHHHHHhhc
Q 013079          324 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA-NRLMNYLQN  374 (450)
Q Consensus       324 ~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~-~~~~~~l~~  374 (450)
                      |+.+...+.                  -.+++.+.+.+.... ..+.+.|..
T Consensus       359 G~~vv~ggT------------------dshIV~V~lg~~~~~g~~a~~~L~e  392 (493)
T PRK13580        359 GARLVTGGT------------------DNHLVLIDVTSFGLTGRQAESALLD  392 (493)
T ss_pred             CCCccCCCC------------------CCCEEEEEeCCHHHHHHHHHHHHHH
Confidence            886543221                  134899999854422 244445554

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.79  E-value=3.2e-18  Score=151.00  Aligned_cols=153  Identities=19%  Similarity=0.237  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHH-HHHHHhCCCccCeeEEEeCCC-
Q 013079          101 VLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTH-ALLTHFFPRACNITTTFVDIS-  176 (450)
Q Consensus       101 ~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~-~~~~~~~~~~~g~~v~~v~~~-  176 (450)
                      .+++++.+++++  +.+.+++++|   |++|+.+++.++..++++|+++++.|++.. ..+.     ..|.++.+++.+ 
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~---~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~g~~~~~v~~~~   73 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPS---GTGANEAALLALLGPGDEVIVDANGHGSRYWVAAE-----LAGAKPVPVPVDD   73 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCC---cHHHHHHHHHHhCCCCCEEEEeecccceehhhHHH-----hcCCEEEEeccCC
Confidence            468999999999  7888999999   999999999999888999999999999887 4432     268888887754 


Q ss_pred             ----CH--HHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-----CccCCCCeEEEe
Q 013079          177 ----DH--EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPARLGADVVVH  245 (450)
Q Consensus       177 ----d~--~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-----~~~~~g~di~~~  245 (450)
                          +.  +.+++....++++++++++++|++|...|+++|.++|+++|+++|+|++|..+..     ++...++|+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~  153 (170)
T cd01494          74 AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTF  153 (170)
T ss_pred             CCccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEE
Confidence                11  2444444357899999999999999999999999999999999999999843332     244558999999


Q ss_pred             CCCCccccCccceEEEEEc
Q 013079          246 SISKFISGGADIIAGAVCG  264 (450)
Q Consensus       246 S~sK~~g~~g~~igG~l~~  264 (450)
                      |+||++++++  . |+++.
T Consensus       154 s~~K~~~~~~--~-G~l~~  169 (170)
T cd01494         154 SLHKNLGGEG--G-GVVIV  169 (170)
T ss_pred             EcccccCCCc--e-EEEEe
Confidence            9999999855  4 88865

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN02624 ornithine-delta-aminotransferase

Probab=99.79  E-value=3.6e-17  Score=167.97  Aligned_cols=254  Identities=14%  Similarity=0.199  Sum_probs=163.1

Q ss_pred             CCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc---------CCC-EEEEeCCCchhHHHHHHHh----
Q 013079           96 HFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS---------SGG-HVVAARTLYGGTHALLTHF----  161 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~---------~gd-~Vi~~~~~y~~~~~~~~~~----  161 (450)
                      ..++...++.+.|+++.+.+.++|++|   |++|+..|++....         +++ .|+.....|++........    
T Consensus       114 ~~~~~~~~la~~L~~~~~~~~~~f~~S---GseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~  190 (474)
T PLN02624        114 FYNDKFPEFAEYLTSMFGYDMVLPMNT---GAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDN  190 (474)
T ss_pred             cCCHHHHHHHHHHHhhcCCCeEEEeCC---hHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCc
Confidence            457788899999999998889999999   99999999974332         123 5777777787753222111    


Q ss_pred             ------CCCccCeeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCC
Q 013079          162 ------FPRACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFS  229 (450)
Q Consensus       162 ------~~~~~g~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~  229 (450)
                            .+.  ...+.+++..|++.+++.+..  +++++|++++++|++|.+.|    +++|.++|++||+++|+||+|+
T Consensus       191 ~~~~~~~~~--~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t  268 (474)
T PLN02624        191 EATRGFGPL--LPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT  268 (474)
T ss_pred             cccccCCCC--CCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence                  011  112445666789999998832  46889999999999999987    9999999999999999999996


Q ss_pred             CCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcH
Q 013079          230 PLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL  302 (450)
Q Consensus       230 ~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l  302 (450)
                      ++...       ......|+++  ++|.+|++++++ |+++.+++++..+..... ..+..++.+.+.++...+..++. 
T Consensus       269 G~GrtG~~~a~~~~~i~pDiv~--lsK~lggG~~pi-gav~~~~~i~~~~~~~~~-~~T~~g~pl~~aaa~aaLe~l~~-  343 (474)
T PLN02624        269 GLARTGKMLACDWEEVRPDVVI--LGKALGGGVIPV-SAVLADKDVMLCIKPGEH-GSTFGGNPLASAVAMAALQVVQD-  343 (474)
T ss_pred             CcCcCcchhhHHhcCCCCCEEE--ecccccCCCCcc-eeeeecHHHHhHhccCCc-CCCCCCCHHHHHHHHHHHHHHHh-
Confidence            55321       1223467777  689999877888 888888877766543222 12223444444444333332221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHHHHHHHhhc
Q 013079          303 GLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGLLCLDMET----EEKANRLMNYLQN  374 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~~~~~~l~~  374 (450)
                      ....++..++.+.+.+.|+++..+  +|. +.             +..|.|.++.+.+..    ...+..+...|..
T Consensus       344 ~~l~~~~~~~~~~l~~~L~~l~~~--~~~~i~-------------~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e  405 (474)
T PLN02624        344 EKLAERSAKLGQELRDQLQKIQKQ--FPKLIK-------------EVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKE  405 (474)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHh--CCCceE-------------EEEeeEEEEEEEecCCCcChHHHHHHHHHHHh
Confidence            112233445555666666553211  110 00             112567788888863    2345667777654

>PLN00144 acetylornithine transaminase

Probab=99.79  E-value=4.8e-17  Score=162.87  Aligned_cols=252  Identities=15%  Similarity=0.200  Sum_probs=158.6

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc---cC------------CCEEEEeCCCchhHHHHHHHh
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC---SS------------GGHVVAARTLYGGTHALLTHF  161 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~---~~------------gd~Vi~~~~~y~~~~~~~~~~  161 (450)
                      .++...++.++|+++.+.+.++|++|   |+||+..|++...   ..            ..+|+.....||+........
T Consensus        55 ~~~~~~~la~~l~~~~~~~~v~f~~s---GseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~  131 (382)
T PLN00144         55 HTIPQVELAKRLVASSFADRVFFCNS---GTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALAL  131 (382)
T ss_pred             cCHHHHHHHHHHHhcCCCCeEEEeCC---cHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhc
Confidence            36677889999998877788999999   9999999998542   10            246899998998865333211


Q ss_pred             CC----C-cc---CeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc--C--HHHHHHHHHhcCCEEEEeCCCC
Q 013079          162 FP----R-AC---NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA--N--IPELSRLAHDKGVTVVVDNTFS  229 (450)
Q Consensus       162 ~~----~-~~---g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~--~--l~~I~~la~~~gi~livD~~~~  229 (450)
                      ..    + .+   -..+.+++..|++.+++.+...++++|++++.+||.|...  +  +++|.++|++||+++|+||+|+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~t  211 (382)
T PLN00144        132 TSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQC  211 (382)
T ss_pred             CCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            00    0 00   1124566777999999988446789999999999955543  3  8899999999999999999986


Q ss_pred             CCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcH
Q 013079          230 PLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL  302 (450)
Q Consensus       230 ~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l  302 (450)
                      ++...       ...+..|  +.|++|.++ +|.++ |+++.++++++.+..... ..+..++.+.+.++...+..++. 
T Consensus       212 g~gr~g~~~~~~~~~~~PD--i~t~sK~l~-~G~pi-g~v~~~~~~~~~~~~~~~-~~T~~~~pl~~aaa~a~l~~i~~-  285 (382)
T PLN00144        212 GLGRTGYLWAHEAYGVEPD--IMTLAKPLA-GGLPI-GAVLVTEKVASAINPGDH-GSTFAGGPLVCNAALAVLDKISK-  285 (382)
T ss_pred             CCCccchHhhhhhcCCCCC--EEEeccccc-CCcce-EEEEEcHHHHhccCCCCC-CCCCCCCHHHHHHHHHHHHHHhh-
Confidence            55322       1223467  455999999 57898 999999888887753222 22234444444444433333221 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ....++..+..+++.+.|++.-.+  +|...             +.+|.|.++++++..  ....+...+..
T Consensus       286 ~~~~~~~~~~g~~l~~~l~~~~~~--~~~~~-------------~vrg~G~~~~l~l~~--~~~~~~~~~~~  340 (382)
T PLN00144        286 PGFLASVAKKGEYLRELLRRKLGG--NPHVK-------------EVRGVGLLVGIQLDV--PAGPLVDACRD  340 (382)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhh--CCCce-------------eeecCceEEEEEecC--ccHHHHHHHHH
Confidence            112223333334444444331000  11100             122678899999942  13456666554

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.79  E-value=3.8e-17  Score=163.69  Aligned_cols=278  Identities=12%  Similarity=0.157  Sum_probs=169.5

Q ss_pred             HHHHHHHHHHh-CC-C-eEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHH-HHHHHh----CCCccCe---
Q 013079          102 LNLSRQMAALE-GT-E-AAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTH-ALLTHF----FPRACNI---  168 (450)
Q Consensus       102 ~~l~~~iA~l~-g~-~-~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~-~~~~~~----~~~~~g~---  168 (450)
                      ..+++.+|+.+ +. + .++|++|   |++|+..+++...  ..+++|++.+..||+.. ..+...    .....+.   
T Consensus        69 ~~~~~~la~~l~~~~~~~~~~~~S---GseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~  145 (375)
T PRK04260         69 NSLQEEVAQKLIGDKDYLAFFCNS---GAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVP  145 (375)
T ss_pred             CHHHHHHHHHHhcCcCCEEEEcCc---cHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCC
Confidence            34555666543 22 2 3589999   9999999998652  34578999999888643 222100    0000111   


Q ss_pred             eEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC--c-----cC
Q 013079          169 TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS--P-----AR  237 (450)
Q Consensus       169 ~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~--~-----~~  237 (450)
                      .+.+.+..|++++++.+ ++++++|++++++|++|.+.+    +++|.++|+++|+++|+|++|+++...  +     ..
T Consensus       146 ~~~~~~~~dl~~l~~~l-~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~  224 (375)
T PRK04260        146 HFSYAIFNDLNSVKALV-NKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYG  224 (375)
T ss_pred             CeEEeCCCCHHHHHHhc-CCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhC
Confidence            13334456899999988 778899999999999999865    899999999999999999998555321  1     11


Q ss_pred             CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC--cHHHHH-HHHHHHHH
Q 013079          238 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP--HLGLRM-KEHCHRAL  314 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~--~l~~~~-~~~~~~~~  314 (450)
                      +..|++  |+||.++ +|.++ |++++++++.+.+..... ..+..++.+.+.++...+...+  .+.++. +.....++
T Consensus       225 ~~pdi~--t~sK~l~-~G~~i-g~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~  299 (375)
T PRK04260        225 IEPDIF--TLAKGLA-NGVPV-GAMLAKSSLGGAFGYGSH-GSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQE  299 (375)
T ss_pred             CCCCEE--Eeccccc-CCcce-EEEEEcHHHHhhcCCCCC-CCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            245654  6999999 57888 999999888777643211 1223334444444444433222  122222 22233444


Q ss_pred             HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccc
Q 013079          315 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC  394 (450)
Q Consensus       315 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~  394 (450)
                      .+.+.+.+++.....                   .+.|.++++++..  ....|.+.+...   | +.+.          
T Consensus       300 ~l~~~~~~~~~~~~~-------------------~~~g~~~~~~~~~--~~~~~~~~l~~~---G-i~v~----------  344 (375)
T PRK04260        300 QLQKALQDKETVTTV-------------------RGLGYMIGIETTA--DLSQLVEAARDK---G-LIVL----------  344 (375)
T ss_pred             HHHHHHhhCCCeeEE-------------------eccceEEEEEecC--cHHHHHHHHHhC---C-CEEe----------
Confidence            444444443321111                   1467799999853  245677776642   3 2221          


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          395 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       395 ~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      +.                 ..+.|||++. ...+++.++.+.+.+++
T Consensus       345 ~~-----------------~~~~lR~~~~-~~~t~~~i~~~l~~l~~  373 (375)
T PRK04260        345 TA-----------------GTNVIRLLPP-LTLTKEEIEQGIAILSE  373 (375)
T ss_pred             cC-----------------CCCEEEEcCC-CccCHHHHHHHHHHHHH
Confidence            00                 1367999997 65557777776666654

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.78  E-value=5.3e-17  Score=163.60  Aligned_cols=257  Identities=14%  Similarity=0.173  Sum_probs=160.1

Q ss_pred             CCChhHHHHHHHHHHHhC-CCeEEEecChHHHHHHHHHHHHHhcc----CC-----CEEEEeCCCchhHHHHHHHhC--C
Q 013079           96 HFNPTVLNLSRQMAALEG-TEAAYCTASDKAGMSAISSVLMQLCS----SG-----GHVVAARTLYGGTHALLTHFF--P  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g-~~~~~~tsg~~~gt~ai~~al~~l~~----~g-----d~Vi~~~~~y~~~~~~~~~~~--~  163 (450)
                      ..++...++.++|+++.+ .+.++|++|   |+||+..|++....    .|     .+|+.....||+.........  +
T Consensus        79 ~~~~~~~~la~~L~~~~~~~~~v~f~~s---GseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~  155 (408)
T PRK04612         79 FYSAPPLKLAEELVTASRFAEKVFLCNS---GTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQP  155 (408)
T ss_pred             cCCHHHHHHHHHHHhhCCCCCEEEEcCc---hHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCc
Confidence            345667788888888764 467999999   99999999975421    12     368998998988643321110  0


Q ss_pred             C-ccC-----eeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          164 R-ACN-----ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       164 ~-~~g-----~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                      . ..+     ..+.+++..|++.+++++..+++.+|+++..+...|.+.+    +++|.++|+++|+++|+||+|+++..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr  235 (408)
T PRK04612        156 KYQEGYEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGR  235 (408)
T ss_pred             ccccCCCCCCCCceEcCCCCHHHHHHhhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence            0 001     1235566679999999883345667777765554444432    88999999999999999999965543


Q ss_pred             Cc-----cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHH
Q 013079          234 SP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE  308 (450)
Q Consensus       234 ~~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~  308 (450)
                      ..     ...+.+..+.+++|.++ +|+++ |+++.++++.+.+..... ..+..++.+.+.++...+..++. +...++
T Consensus       236 ~G~~~a~~~~~~~pdi~t~~K~l~-~G~pi-ga~~~~~~~~~~~~~~~~-~~t~~~~p~~~aaa~a~L~~~~~-~~l~~~  311 (408)
T PRK04612        236 TGTLFAHWQEQVTPDIVTLAKALG-GGFPI-GAMLAGPKVAETMQFGAH-GTTFGGNPLAAAVARVALRKLAS-PQIAAN  311 (408)
T ss_pred             CCchhhhhhcCCCCCEEEEcchhc-CCCce-EEEEECHHHHhhhcCCCc-CCCCCCCHHHHHHHHHHHHHHHh-ccHHHH
Confidence            22     12244555566999999 57998 788877777776654222 22233443444444333333222 233455


Q ss_pred             HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhc
Q 013079          309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN  374 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~  374 (450)
                      ..++.+++.+.|+++..+.....               +.+|.|.++.+++..  ...+..+++.+..
T Consensus       312 ~~~~g~~l~~~l~~l~~~~~~i~---------------~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~  364 (408)
T PRK04612        312 VARQSAALRAGLEALNAEFGVFA---------------QVRGRGLMLGAVLAPAHAGQAGAILDLAAE  364 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCee---------------eeeccceEEEEEecCchhhHHHHHHHHHHH
Confidence            56666777777766422211111               223788999999852  2335667666664

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.78  E-value=1.7e-16  Score=159.58  Aligned_cols=210  Identities=15%  Similarity=0.161  Sum_probs=155.6

Q ss_pred             hhHHHHHHHHHHHhCCC---eEEEecChHHHH-HHHHHHHHHhcc---CCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079           99 PTVLNLSRQMAALEGTE---AAYCTASDKAGM-SAISSVLMQLCS---SGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt-~ai~~al~~l~~---~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...+++++.+++++|.+   .++++++   || .++.+++.++-.   +||.||+++..|.++...+.     ..|.+++
T Consensus       105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~---~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~-----~~G~~pv  176 (444)
T TIGR03531       105 KLTNKLVKDFLKLLGLRSIKSAFVVPL---ATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAIS-----TAGFEPR  176 (444)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECC---HHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHH-----HcCCeEE
Confidence            35688999999999987   6899999   99 688888776532   58999999999999988875     4788888


Q ss_pred             EeCC--C------CHHHHHHhhhcC---CceEEEEecCC-CCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-C-----
Q 013079          172 FVDI--S------DHEMVNSAIVQG---RTKVLYFESIS-NPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-L-----  233 (450)
Q Consensus       172 ~v~~--~------d~~~l~~ai~~~---~t~lv~i~~~~-NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~-----  233 (450)
                      +++.  +      |+++|+++| ++   ++.++++.+++ +++|...|+++|+++|++||+++|+|++|+... .     
T Consensus       177 ~Vd~~~d~~~~~iD~e~Le~aI-t~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~  255 (444)
T TIGR03531       177 VIETVLDGDELTTDVEDIERAI-EEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELI  255 (444)
T ss_pred             EeeeeecCcCCCcCHHHHHHHH-HhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhh
Confidence            8873  1      899999999 54   55666666664 556688999999999999999999999995321 1     


Q ss_pred             -CccCCC-CeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHH--HHccCCcHHHHHHH
Q 013079          234 -SPARLG-ADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERIPHLGLRMKE  308 (450)
Q Consensus       234 -~~~~~g-~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~--~~~~~~~l~~~~~~  308 (450)
                       .....| +|+++.|+||++..+++  ||+++. ++++++.+.....+   ...+.+.+ .+++  ...+.+.+.+.+++
T Consensus       256 ~~g~~~Grad~vv~s~hK~l~~pg~--Gg~I~~~d~el~~~i~~~y~g---~~~~s~~~-~~~~~ll~~G~~g~~~li~~  329 (444)
T TIGR03531       256 NKAIKVGRVDAVVSSTDKNFMVPVG--GAIIYSFDENFIQEISKSYPG---RASASPSL-DVLITLLSLGSKGYLELLKE  329 (444)
T ss_pred             hccccccCCCeEEEeCccCCCCCCC--EEEEEECCHHHHHHHHHhccC---CCCChHHH-HHHHHHHHhCHHHHHHHHHH
Confidence             122344 69999999999998775  576645 77888777654331   11222222 2333  22255667788888


Q ss_pred             HHHHHHHHHHHHHhC
Q 013079          309 HCHRALIFARRMKKL  323 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~  323 (450)
                      +.++++++.+.|+++
T Consensus       330 ~~~~a~~l~~~L~~l  344 (444)
T TIGR03531       330 RKEMYKYLKELLQKL  344 (444)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888999999998765

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.77  E-value=6.5e-17  Score=164.61  Aligned_cols=222  Identities=14%  Similarity=0.166  Sum_probs=145.3

Q ss_pred             CChhHHHHHHHHHHHhC-CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHh------------
Q 013079           97 FNPTVLNLSRQMAALEG-TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF------------  161 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g-~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~------------  161 (450)
                      .++...+++++|+++.. .+.++||+|   |++|+..+++...  ..+++||+..+.|++....+...            
T Consensus        86 ~~~~~~~lae~l~~~~~~~~~v~~~~s---GseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~  162 (423)
T TIGR00713        86 PTEAEILLAKEIISRVPSVEMVRFVNS---GTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPT  162 (423)
T ss_pred             CCHHHHHHHHHHHHhCCcccEEEEeCC---HHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCC
Confidence            45677899999999875 367999999   9999999998542  24589999999999965332110            


Q ss_pred             CC---CccCeeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          162 FP---RACNITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       162 ~~---~~~g~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                      .+   ...+..+..++..|++++++++.+  +++++|++++..+.+|.+.+    +++|.++|++||+++|+||+|+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r  242 (423)
T TIGR00713       163 SPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFR  242 (423)
T ss_pred             CCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccc
Confidence            00   000112344455689999998832  57889999855444898866    7899999999999999999996553


Q ss_pred             CC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCc--H
Q 013079          233 LS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPH--L  302 (450)
Q Consensus       233 ~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~--l  302 (450)
                      ..      ......|++  +++|.++ .|+|+ |++++++++++.+.....  ...+..++.+.+.++...+..++.  +
T Consensus       243 ~g~~~~~~~~~~~pDi~--t~sK~l~-~G~pi-g~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~  318 (423)
T TIGR00713       243 VALGGAQEYFGVEPDLT--TLGKIIG-GGLPV-GAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGV  318 (423)
T ss_pred             cCcchhHHHhCCCcchh--hhhhhhc-CCCce-eeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccH
Confidence            21      112235654  6999999 78998 999999988887753211  112233444444444444443322  2


Q ss_pred             HHHHH-HHHHHHHHHHHHHHhCCC
Q 013079          303 GLRMK-EHCHRALIFARRMKKLGL  325 (450)
Q Consensus       303 ~~~~~-~~~~~~~~l~~~L~~~~~  325 (450)
                      .++.+ ....+++.+.+.+++++.
T Consensus       319 ~~~~~~~~~~~~~~l~~~~~~~~~  342 (423)
T TIGR00713       319 YTELDELAKRLAEGLSEVLEDTGI  342 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            22322 234455556665666554

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.77  E-value=1.9e-16  Score=157.16  Aligned_cols=220  Identities=18%  Similarity=0.169  Sum_probs=149.2

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH-HHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~-~~~~~~~~~g~~v~~v~~  175 (450)
                      +.|+..+|++.+++++|.+.+++|+|   |+.|++++....+++||.|  +.+.|..+... +.     ..|....-++.
T Consensus        69 g~~s~~~lE~~va~~~G~~~av~v~s---GT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe-----~~Gav~vDi~~  138 (450)
T TIGR02618        69 GSRNFYHLERTVRELYGFKYVVPTHQ---GRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQE-----KNGATFVDIII  138 (450)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEcCC---HHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHH-----hCCeEEEeeec
Confidence            67899999999999999999999999   9999998766678999976  66777544443 43     24543333311


Q ss_pred             ---------------CCHHHHHHhhhcC----CceEEEEecCCCCc-ccc---cCHHHHHHHHHhcCCEEEEeCCC-C-C
Q 013079          176 ---------------SDHEMVNSAIVQG----RTKVLYFESISNPT-LAV---ANIPELSRLAHDKGVTVVVDNTF-S-P  230 (450)
Q Consensus       176 ---------------~d~~~l~~ai~~~----~t~lv~i~~~~Npt-G~v---~~l~~I~~la~~~gi~livD~~~-~-~  230 (450)
                                     .|+++|+++| ++    ++++|.++.++|-. |.+   .++++|.++|+++|+++|.|.+. . .
T Consensus       139 dea~~~~~~~p~~GniD~~~Le~aI-~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gN  217 (450)
T TIGR02618       139 DEAHDAQLNIPFKGNVDLKKLQKLI-DEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVEN  217 (450)
T ss_pred             ccccccccCCCCCCCcCHHHHHHHh-ccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhC
Confidence                           1899999999 54    45678888888865 677   45899999999999999999986 2 1


Q ss_pred             --CC------C---Ccc----CC--CCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhh--hhhccCCCchHH
Q 013079          231 --LV------L---SPA----RL--GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQG--ALMLLGPTMNPK  290 (450)
Q Consensus       231 --~~------~---~~~----~~--g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~--~~~~~g~~~~~~  290 (450)
                        +.      +   ++.    ++  .+|.++.|++|..+.+   +||+++ .+++++++++..+.-  .....|. ++..
T Consensus       218 A~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~---~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGg-la~r  293 (450)
T TIGR02618       218 AYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN---IGGFLCMNDDEMFQSAKELVVVFEGMPSYGG-LAGR  293 (450)
T ss_pred             hhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC---CceEEEeCCHHHHHHHHHHhhhcCCccccCc-hhhh
Confidence              11      1   110    11  5899999999999877   578887 788899888776431  1112222 2221


Q ss_pred             HHHHHHccCCc-HHH-HHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013079          291 VAFELSERIPH-LGL-RMKEHCHRALIFARRMKKLGLKVLYPG  331 (450)
Q Consensus       291 ~a~~~~~~~~~-l~~-~~~~~~~~~~~l~~~L~~~~~~v~~p~  331 (450)
                      ...++..++++ ... ...+.....++|.+.|++.|..+..|.
T Consensus       294 ~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~Gvpv~~p~  336 (450)
T TIGR02618       294 DMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAAGVPIVEPV  336 (450)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCCcccCCC
Confidence            11111112222 222 223335568899999999887765553

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.77  E-value=4.8e-17  Score=161.65  Aligned_cols=289  Identities=9%  Similarity=0.026  Sum_probs=183.0

Q ss_pred             ChhHHHHHHHHHHHhCCC---eEEEe-cChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           98 NPTVLNLSRQMAALEGTE---AAYCT-ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~---~~~~t-sg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      ...+++.++.+++++++.   .++|+ +|   ||.++++++.+++.. +.+++..-.|..-........+. .+ ++..+
T Consensus        40 ~~~~~~~r~~l~~l~~~~~~~~v~f~~gs---~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~-~~-~~~~~  113 (361)
T TIGR01366        40 KNLVGRVREGLAELFSLPDGYEVILGNGG---ATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPW-LG-EPIIV  113 (361)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEECCc---hhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhc-cC-CceEE
Confidence            467899999999999972   46775 78   999999999988743 44455566676555544444332 23 55555


Q ss_pred             CCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCcc
Q 013079          174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFI  251 (450)
Q Consensus       174 ~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~  251 (450)
                      +.+..+.++..+ .+++++|++.+..|.||.++|+++|   +|++|+++++|.++  +...++..+  +|++++|.+|++
T Consensus       114 ~~~~~~~~~~~~-~~~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~l  187 (361)
T TIGR01366       114 TADPGSAPEPQA-DPGVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNF  187 (361)
T ss_pred             ecCCCCCCCCcc-CCCCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhc
Confidence            543223344445 6789999999999999999999988   58899999999997  555555543  799999999999


Q ss_pred             ccCccceEEEEEcCHHHHHHHHHHhhh------h------h-----hccCCCchHHHH---HHHHccCC---cHHHHHHH
Q 013079          252 SGGADIIAGAVCGPANLVNSMMDLHQG------A------L-----MLLGPTMNPKVA---FELSERIP---HLGLRMKE  308 (450)
Q Consensus       252 g~~g~~igG~l~~~~~~~~~l~~~~~~------~------~-----~~~g~~~~~~~a---~~~~~~~~---~l~~~~~~  308 (450)
                      |+++. + ++++.++++++++.....+      .      .     ..+.+++.....   ..++..+.   .++.+.++
T Consensus       188 g~~~G-l-~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r  265 (361)
T TIGR01366       188 ASDGG-L-WLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVAR  265 (361)
T ss_pred             CCCCc-e-EEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            99864 3 5566777776655421110      0      0     011233332211   12222221   25556678


Q ss_pred             HHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccc
Q 013079          309 HCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      +.++++++.+.|++.+. ++..+. +....            ..-++++|  +.......+...|...   | |.+..|.
T Consensus       266 ~~~l~~~l~~~l~~~~~~~~~~~~-~~~~s------------~~v~~v~~--~~g~~~~~v~~~L~~~---g-I~i~~~~  326 (361)
T TIGR01366       266 TADSSSRLYSWAQERPYATPFVTD-PGKRS------------QVVGTIDF--VDDIDAATVAKILRAN---G-IVDTEPY  326 (361)
T ss_pred             HHHHHHHHHHHHHhCCCcccCCCC-hhhcc------------cceEEEEC--CCccCHHHHHHHHHHC---C-CeeccCc
Confidence            88899999999998874 332211 10000            01123444  4222355666666542   3 3332110


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .                     .+  ..+.+|||+. ..++.+.++.|.++|+.+.
T Consensus       327 ~---------------------~l--~~~~vRis~~-~~~t~~di~~l~~al~~~~  358 (361)
T TIGR01366       327 R---------------------KL--GRNQLRVAMF-PAIDPDDVEALTECVDWVV  358 (361)
T ss_pred             c---------------------cc--CCCcEEEEcC-CCCCHHHHHHHHHHHHHHH
Confidence            0                     01  1357999999 8899999999999998764

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.76  E-value=1.1e-16  Score=160.95  Aligned_cols=289  Identities=14%  Similarity=0.164  Sum_probs=175.9

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc------CC-CEEEEeCCCchhHHHHHHHhCCC-----
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS------SG-GHVVAARTLYGGTHALLTHFFPR-----  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~------~g-d~Vi~~~~~y~~~~~~~~~~~~~-----  164 (450)
                      .++...++.+.+++..+.+.++|++|   |++|+..+++.+..      +| ++||+.+..||+...........     
T Consensus        76 ~~~~~~~la~~l~~~~~~~~v~f~~S---GseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~  152 (395)
T PRK03715         76 YNEPMAKLAGLLTQHSCFDKVFFANS---GAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDT  152 (395)
T ss_pred             cCHHHHHHHHHHhhccCCCEEEEeCC---cHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCccccc
Confidence            35566777777777666678999999   99999999987641      23 57888888888754322111110     


Q ss_pred             cc---CeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC----
Q 013079          165 AC---NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL----  233 (450)
Q Consensus       165 ~~---g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~----  233 (450)
                      ..   -..+..++..|++++++.+ .+++++|++|++++..|.+.|    +++|.++|+++|+++|+||+|+++..    
T Consensus       153 ~~~~~~~~~~~~~~~d~~~l~~~l-~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~  231 (395)
T PRK03715        153 IFAPQVPGFPKAELNDIASVEKLI-TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTL  231 (395)
T ss_pred             CCCCCCCCceeeCCchHHHHHHHc-CCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcch
Confidence            00   0012223446899999998 778999999999999998877    99999999999999999999965531    


Q ss_pred             ---CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHH
Q 013079          234 ---SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHC  310 (450)
Q Consensus       234 ---~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~  310 (450)
                         ....+.+|+++  ++|.+++ |.++ |+++.++++.. +... ....+..|+.+...++...+..++. +...++..
T Consensus       232 ~a~~~~gv~PDi~t--~gK~lg~-G~p~-~av~~~~~i~~-~~~~-~~~~T~~g~pl~~aaala~L~~l~~-~~l~~~~~  304 (395)
T PRK03715        232 FAYELSGIEPDIMT--LGKGIGG-GVPL-AALLAKAEVAV-FEAG-DQGGTYNGNPLMTAVGVAVISQLLA-PGFLEGVR  304 (395)
T ss_pred             hhHhhcCCCCceee--ehhhhhC-Ccce-EEEEEcccccc-ccCC-CcCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHH
Confidence               11223568765  7899995 5777 66677766642 1110 1111223333332223223222221 23445566


Q ss_pred             HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccc
Q 013079          311 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      ++.+++.+.|+++..+.  + +.             +.+|.|.++.+++... ....+...+......|++ +.      
T Consensus       305 ~~g~~l~~~L~~l~~~~--~-i~-------------~vrG~Glm~~i~l~~~-~~~~~~~~~~~~~~~Gi~-~~------  360 (395)
T PRK03715        305 ARGEYLKEKLLELSEER--G-LE-------------GERGEGLLRALLLGKD-IGPQIVEKARDMQPDGLL-LN------  360 (395)
T ss_pred             HHHHHHHHHHHHHhhcC--C-cC-------------eEEcceeEEEEEecCc-hHHHHHHHHHhccCCCEE-Ee------
Confidence            66777777777542111  1 11             1226788999999753 123343333321001211 10      


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                           ......|||++. ...+++.++.+.++|++.
T Consensus       361 ---------------------~~~~~~lR~~p~-l~~t~~ei~~~~~~l~~~  390 (395)
T PRK03715        361 ---------------------APRPNLLRFMPA-LNVTTEEIDQMIAMLRSV  390 (395)
T ss_pred             ---------------------ecCCCEEEEeCC-cccCHHHHHHHHHHHHHH
Confidence                                 011357999999 867777777776666554

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.76  E-value=3.9e-16  Score=158.26  Aligned_cols=296  Identities=13%  Similarity=0.164  Sum_probs=178.7

Q ss_pred             ccCCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC----
Q 013079           93 YSRHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP----  163 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~----  163 (450)
                      ++...++...++.++|+++..   .+.++|++|   |+||+..|++...  ....+|+.....||+..........    
T Consensus        77 ~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~s---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~  153 (421)
T PRK09792         77 YQIVPYESYVTLAEKINALAPVSGQAKTAFFTT---GAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAP  153 (421)
T ss_pred             cCccCCHHHHHHHHHHHHhCCCCCCceEEEeCC---hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcc
Confidence            334567777889999998864   257899999   9999999998543  2235789999889886432211100    


Q ss_pred             CccCe-----eEEEeCCC----------CHHHHHHhhh----cCCceEEEEecCCCCccccc-C---HHHHHHHHHhcCC
Q 013079          164 RACNI-----TTTFVDIS----------DHEMVNSAIV----QGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGV  220 (450)
Q Consensus       164 ~~~g~-----~v~~v~~~----------d~~~l~~ai~----~~~t~lv~i~~~~NptG~v~-~---l~~I~~la~~~gi  220 (450)
                      ...++     .+..++..          +++.+++.+.    .+++++|+++.+++++|.+. |   +++|.++|+++|+
T Consensus       154 ~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~  233 (421)
T PRK09792        154 YKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGI  233 (421)
T ss_pred             cccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence            00111     12333331          3477887773    24688999999999999764 5   8899999999999


Q ss_pred             EEEEeCCCCCCCCCc-----cC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH
Q 013079          221 TVVVDNTFSPLVLSP-----AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF  293 (450)
Q Consensus       221 ~livD~~~~~~~~~~-----~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~  293 (450)
                      ++|+||+++++....     ..  ...|+  .+++|.++ +|.++ |++++++++++.+..... ..+..++.+.+.++.
T Consensus       234 llI~DEv~tg~gr~G~~~a~~~~~~~pDi--~t~gK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~  308 (421)
T PRK09792        234 VMIADEVQSGFARTGKLFAMDHYADKPDL--MTMAKSLA-GGMPL-SGVVGNANIMDAPAPGGL-GGTYAGNPLAVAAAH  308 (421)
T ss_pred             EEEEeccccCCCCCCchhHHHhcCCCCcE--EEeehhhc-CCCce-EEEEEcHHHHhccCCCCc-CCCCCCCHHHHHHHH
Confidence            999999986663221     11  24675  45999999 57998 889999888877643222 223445555544444


Q ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-------HHHH
Q 013079          294 ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKAN  366 (450)
Q Consensus       294 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-------~~~~  366 (450)
                      ..+..++.- ...++.++..+++.+.|+++..+  +|...             +.+|.|.++++++++.       ....
T Consensus       309 a~l~~l~~~-~~~~~~~~~g~~l~~~l~~l~~~--~p~v~-------------~vrG~Gl~~~ie~~~~~~~~~~~~~~~  372 (421)
T PRK09792        309 AVLNIIDKE-SLCERANQLGQRLKNTLIDAKES--VPAIA-------------AVRGLGSMIAAEFNDPQTGEPSAAIAQ  372 (421)
T ss_pred             HHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHh--CCCcc-------------eecccceEEEEEecCCccCCcchHHHH
Confidence            433322211 12223334444444444432111  11100             2237899999999732       2345


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .+...+..   .|+ .+..                         .+...+.|||.+. ..-+++.++.+.+++.+.
T Consensus       373 ~l~~~~~~---~Gv-~i~~-------------------------~g~~~~~irl~P~-l~i~~~ei~~~~~~l~~~  418 (421)
T PRK09792        373 KIQQRALA---QGL-LLLT-------------------------CGAYGNVIRFLYP-LTIPDAQFDAAMKILQDA  418 (421)
T ss_pred             HHHHHHHH---CCc-EEee-------------------------cCCCCCEEEEeCC-CcCCHHHHHHHHHHHHHH
Confidence            56655553   232 2110                         0112478999988 655666666666666543

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.76  E-value=1.6e-15  Score=136.92  Aligned_cols=219  Identities=19%  Similarity=0.265  Sum_probs=169.5

Q ss_pred             CCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           96 HFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ...|.+..+-+.||+++|.+.+-+|+|   +.+|-.+++.+++++||.|++....|..+.-++.     ..|.++..||.
T Consensus        58 i~kPpI~~F~~dlaeFlg~D~~R~t~G---ARe~KfavMhal~~~gd~vV~D~~aHYttyvAAE-----ragl~v~eVp~  129 (382)
T COG1103          58 ITKPPIKDFLEDLAEFLGMDEVRVTAG---AREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAE-----RAGLNVAEVPN  129 (382)
T ss_pred             ccCCcHHHHHHHHHHHhCCceeeeccc---chhhHHHHHHHhccCCCEEEEcCcchHHHHHHHH-----hcCCeEEecCC
Confidence            346888999999999999999999999   9999999999999999999999999887776665     26888888875


Q ss_pred             C-------CHHHHHHhhh---c---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCC
Q 013079          176 S-------DHEMVNSAIV---Q---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGA  240 (450)
Q Consensus       176 ~-------d~~~l~~ai~---~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~  240 (450)
                      .       +++...+.|.   +   ..+.+.+++++...-|.+.|.++++++|+++|+++++..+|  +.+..+..+.|+
T Consensus       130 tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~  209 (382)
T COG1103         130 TGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGA  209 (382)
T ss_pred             CCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCC
Confidence            4       5555544441   1   34788899999999999999999999999999999999999  778888889999


Q ss_pred             eEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh-----hhhccCCCchHHHHHHHHccCCcHHHHHHHH---HHH
Q 013079          241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-----ALMLLGPTMNPKVAFELSERIPHLGLRMKEH---CHR  312 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-----~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~---~~~  312 (450)
                      |++++|.||.++.. .++ |++..+.++.+.+......     -....|.+.-......+.....+..+|+++.   .+.
T Consensus       210 DFiVgSGHKsmAAs-~Pi-Gvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~k  287 (382)
T COG1103         210 DFIVGSGHKSMAAS-API-GVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEK  287 (382)
T ss_pred             CEEEecCccchhcc-CCe-eEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            99999999999954 456 9998888888776433210     0112333322222222333566666776653   567


Q ss_pred             HHHHHHHHHhCC
Q 013079          313 ALIFARRMKKLG  324 (450)
Q Consensus       313 ~~~l~~~L~~~~  324 (450)
                      ++++.+.|.+++
T Consensus       288 aR~fv~elEkig  299 (382)
T COG1103         288 ARWFVAELEKIG  299 (382)
T ss_pred             HHHHHHHHHHhh
Confidence            788999998876

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.76  E-value=4.2e-16  Score=158.91  Aligned_cols=255  Identities=13%  Similarity=0.152  Sum_probs=156.7

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC---C---Cc
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF---P---RA  165 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~---~---~~  165 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..+++...  ....+|+.....||+.........   .   +.
T Consensus        83 ~~~~~~~~la~~L~~~~~~~~~~v~f~~S---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~  159 (433)
T PRK08117         83 IYYESILKLAEELAEITPGGLDCFFFSNS---GAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKY  159 (433)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCc---HHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCcccccc
Confidence            356788999999999983  457899999   9999999998532  223578888888888543221000   0   00


Q ss_pred             cC---eeEEEeCCC-----------------CHHHHHHhhh----cCCceEEEEecCCCCcccccC----HHHHHHHHHh
Q 013079          166 CN---ITTTFVDIS-----------------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHD  217 (450)
Q Consensus       166 ~g---~~v~~v~~~-----------------d~~~l~~ai~----~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~  217 (450)
                      .+   ..+.+++..                 +++++++.+.    .+++.+|++|.+....|.+.+    +++|.++|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~  239 (433)
T PRK08117        160 YQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDR  239 (433)
T ss_pred             CCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHH
Confidence            00   012222221                 4555666652    246889999999999999988    9999999999


Q ss_pred             cCCEEEEeCCCCCCCCCc-----cCCC--CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH
Q 013079          218 KGVTVVVDNTFSPLVLSP-----ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK  290 (450)
Q Consensus       218 ~gi~livD~~~~~~~~~~-----~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~  290 (450)
                      ||+++|+||+|+++....     ..++  .|+  .+++|.++ .|.++ |++++++++++.+..... ..+..++.+.+.
T Consensus       240 ~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi--~t~sK~lg-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~np~~~a  314 (433)
T PRK08117        240 HGILLIFDEVQTGFGRTGEWFAAQTFGVVPDI--MTIAKGIA-SGLPL-SAVVASKELMEQWPLGSH-GTTFGGNPVACA  314 (433)
T ss_pred             cCCEEEEecchhccCccccchhHhhcCCCCCE--eehhhhcc-CCCcc-eeEEEcHHHHhhccCCCC-CCCCCcCHHHHH
Confidence            999999999996553211     1223  455  57999999 67998 888888888876643222 222334444433


Q ss_pred             HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC------CHHH
Q 013079          291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME------TEEK  364 (450)
Q Consensus       291 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~------~~~~  364 (450)
                      ++...+..++. ....++..++.+++.+.|+++..+  +|...             +.+|.|.++.+++.      ....
T Consensus       315 aa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~~~-------------~vrg~Gl~~gi~~~~~~~~~~~~~  378 (433)
T PRK08117        315 AALATLEVIKE-EKLLDNANEMGAYALERLEVLKEK--HPVIG-------------DVRGIGLMIGIEIVDPDGEPDGDA  378 (433)
T ss_pred             HHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--CCcee-------------eeecCCcEEEEEEecCCCCcchHH
Confidence            44333332211 123344455566666666653211  11100             22367889999984      2223


Q ss_pred             HHHHHHHhhc
Q 013079          365 ANRLMNYLQN  374 (450)
Q Consensus       365 ~~~~~~~l~~  374 (450)
                      ...+...+..
T Consensus       379 ~~~~~~~l~~  388 (433)
T PRK08117        379 VEKILDKCLE  388 (433)
T ss_pred             HHHHHHHHHH
Confidence            4455555543

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.75  E-value=4.5e-18  Score=162.66  Aligned_cols=225  Identities=22%  Similarity=0.198  Sum_probs=159.1

Q ss_pred             cccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079           92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus        92 ~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      .||  .++.++++++++++++|.+.++|+++   ||.|+.++++.++++++.|++..+.|-...+.-. . ....|.++.
T Consensus        24 ~Yg--~D~~~~~l~~~i~~l~g~e~a~f~~s---GT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga-~-~~~~G~~~~   96 (290)
T PF01212_consen   24 AYG--EDPTTARLEERIAELFGKEAALFVPS---GTMANQLALRAHLRPGESVICADTAHIHFDETGA-I-EELSGAKLI   96 (290)
T ss_dssp             CTT--SSHHHHHHHHHHHHHHTSSEEEEESS---HHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTH-H-HHHTTCEEE
T ss_pred             ccC--CChhHHHHHHHHHHHcCCCEEEEeCC---CChHHHHHHHHHHhcCCceeccccceeeeeccch-h-hHhcCcEEE
Confidence            355  58999999999999999999999999   9999999999999999999999887654332210 0 002577777


Q ss_pred             EeCCC-----CHHHHHHhhhc-----CCceEEEEecCCCCc-cccc---CHHHHHHHHHhcCCEEEEeCCC-----CCCC
Q 013079          172 FVDIS-----DHEMVNSAIVQ-----GRTKVLYFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-----SPLV  232 (450)
Q Consensus       172 ~v~~~-----d~~~l~~ai~~-----~~t~lv~i~~~~Npt-G~v~---~l~~I~~la~~~gi~livD~~~-----~~~~  232 (450)
                      .++..     |+++|++++..     .++++|+|++++|.. |.+.   ++++|.++||++|+++|.|.+-     ..+.
T Consensus        97 ~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~  176 (290)
T PF01212_consen   97 PLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG  176 (290)
T ss_dssp             EEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH
T ss_pred             ECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc
Confidence            76543     79999998844     468999999999875 5665   4778999999999999999984     1111


Q ss_pred             CCccC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCch---HHHH-----HHHHccCCcH
Q 013079          233 LSPAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN---PKVA-----FELSERIPHL  302 (450)
Q Consensus       233 ~~~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~---~~~a-----~~~~~~~~~l  302 (450)
                      ..+.+  .++|.++.|++|.++.++   |++++.++++++....+++    ..|+.+.   ...+     ...+..++..
T Consensus       177 ~~~~e~~~~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~~~~k----~~gg~~~~~G~~~a~~~~~~~~l~~l~~~  249 (290)
T PF01212_consen  177 VSLAEIAAGADSVSFGGTKNGGAPG---GAVLAGNKEFIAKARRQRK----RLGGGMRQAGVLAAAELYQFAALRALELW  249 (290)
T ss_dssp             HHHHHHHTTSSEEEEETTSTT-SSS---EEEEEESHHHHHHHHHHHH----HHTHHHHHTTHHHHHHHHHHHHHCHEECS
T ss_pred             ccHHHHhhhCCEEEEEEEccccccc---ceEEEechHHHHHHHHHHH----HhccCeeecceeeeechhhHHHHHHHHhh
Confidence            22222  279999999999999875   6888999997766554444    2222111   1122     1233344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079          303 GLRMKEHCHRALIFARRMKKLGLKVLYP  330 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p  330 (450)
                      ..+..+..+++++|.+.|+..+..+..|
T Consensus       250 ~~~~~~~~~~A~~La~~l~~~~~~~~~~  277 (290)
T PF01212_consen  250 LERARHANAMAKRLAAGLEALGGVLPRP  277 (290)
T ss_dssp             HHHHHCHHHHHHCHHHCHHEECEEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence            5666777888899999998887755444

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.74  E-value=2e-15  Score=153.52  Aligned_cols=196  Identities=12%  Similarity=0.149  Sum_probs=128.6

Q ss_pred             CCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCC----cc
Q 013079           96 HFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR----AC  166 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~----~~  166 (450)
                      ..++...++.+.+++..+.   +.++|++|   |++|+..+++...  ....+|++.++.|++....+......    ..
T Consensus        81 ~~~~~~~~la~~l~~~~~~~~~~~~~f~~s---Gsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~  157 (425)
T PRK08088         81 LAYEPYLELCEKMNQKVPGDFAKKTLLVTT---GSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSA  157 (425)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEEeCC---cHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCcccc
Confidence            3456677888888887653   57899999   9999999987542  23456888899999876544322110    01


Q ss_pred             C-------eeEEEeCCC--------CHHHHHHhhh----cCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEE
Q 013079          167 N-------ITTTFVDIS--------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVV  223 (450)
Q Consensus       167 g-------~~v~~v~~~--------d~~~l~~ai~----~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~li  223 (450)
                      |       +....++.+        +++++++++.    .++.++|++|.+.+..|.+.+    +++|.++|+++|+++|
T Consensus       158 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI  237 (425)
T PRK08088        158 GMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLI  237 (425)
T ss_pred             CCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence            1       111111111        1556887773    256789999988776676655    8999999999999999


Q ss_pred             EeCCCCCCCCCc--c---CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc
Q 013079          224 VDNTFSPLVLSP--A---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE  297 (450)
Q Consensus       224 vD~~~~~~~~~~--~---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~  297 (450)
                      +||+|+++....  .   ..+.+.-+.|++|.++ +|+|+ ||+++++++++.+..... ..+..++.+.+.++...+.
T Consensus       238 ~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~-~G~ri-g~v~~~~~~~~~~~~~~~-~~t~~~~~~~~~a~~~~l~  313 (425)
T PRK08088        238 ADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIA-GGFPL-AGVTGRAEVMDAIAPGGL-GGTYAGNPIACAAALAVLK  313 (425)
T ss_pred             EeccccCCCcCcchhHHhhcCCCCCEEEEecccc-CCCcc-eeeEecHHHHhhcCCCCC-CCCCCcCHHHHHHHHHHHH
Confidence            999996553221  1   2244444678999999 68998 999999999887754332 2223344444444444433

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.74  E-value=1.2e-15  Score=155.24  Aligned_cols=240  Identities=17%  Similarity=0.202  Sum_probs=149.2

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC------Ccc
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP------RAC  166 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~------~~~  166 (450)
                      .++...++.+.|+++.+.  +.++|++|   |+||+..|++...  ....+|+.....||+..........      ..+
T Consensus        82 ~~~~~~~la~~L~~~~p~~~~~v~f~~s---GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~  158 (443)
T PRK08360         82 FPVEPLLLAEKLIEIAPGDNPKVSFGLS---GSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALV  158 (443)
T ss_pred             CcHHHHHHHHHHHHhCCCCCCEEEEcCC---HHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCC
Confidence            466778889999998754  57899999   9999999998542  2235788888888875422111100      001


Q ss_pred             C--eeEEEeCCC-----------------CHHHHHHhhh----cCCceEEEEecCCCCcccccC----HHHHHHHHHhcC
Q 013079          167 N--ITTTFVDIS-----------------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAHDKG  219 (450)
Q Consensus       167 g--~~v~~v~~~-----------------d~~~l~~ai~----~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~g  219 (450)
                      +  ..+.+++..                 +++.+++.+.    .+++++|+++..+||+|.+.+    +++|.++|+++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g  238 (443)
T PRK08360        159 GELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHG  238 (443)
T ss_pred             CCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            1  112333221                 2344555552    257899999999999998865    889999999999


Q ss_pred             CEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH
Q 013079          220 VTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA  292 (450)
Q Consensus       220 i~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a  292 (450)
                      +++|+||+|+++....       ..+..|++  +++|.++ +|+++ |++++++++++.+..... ..+..++.+.+.++
T Consensus       239 ~llI~DEv~~g~gr~G~~~a~~~~~~~pDii--tlsK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~p~~~aaa  313 (443)
T PRK08360        239 ILLVVDEVQSGLGRTGKWFAIEHFGVEPDII--TLGKPLG-GGLPI-SATIGRAEIMDSLPPLAH-AFTLSGNPVASAAA  313 (443)
T ss_pred             CEEEEeccccCCCcCccchhhhhcCCCCCEE--Eeccccc-CCcee-EEEEEcHHHHhhhcCCCC-CCCCCcCHHHHHHH
Confidence            9999999996553211       12245766  4799999 68998 889999888887753322 22233444444444


Q ss_pred             HHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       293 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ...+..++.. ...++..++.+++.+.|+++..+  +|...             +.+|.|.++.++|.
T Consensus       314 ~a~l~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~v~-------------~vrg~Gl~~gie~~  365 (443)
T PRK08360        314 LAVIEEIEEK-NLLKRAEKLGNYTKKRLEEMKKK--HELIG-------------DVRGIGLMIGVDLV  365 (443)
T ss_pred             HHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHh--CCCee-------------eeeccceEEEEEEe
Confidence            3333332211 22344455555666666543111  11100             22368889999885

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.74  E-value=7.9e-16  Score=155.95  Aligned_cols=294  Identities=16%  Similarity=0.172  Sum_probs=184.9

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhcc----CC-CEEEEeCCCchhHHHHHHHhC-----C
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCS----SG-GHVVAARTLYGGTHALLTHFF-----P  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~----~g-d~Vi~~~~~y~~~~~~~~~~~-----~  163 (450)
                      ..++...++.++|+++...  +.++|++|   |+||+.+|++....    .| .+||+....||+.........     .
T Consensus       114 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~S---GsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~  190 (442)
T TIGR03372       114 LLDPLRALLAKTLAALTPGKLKYSFFCNS---GTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFR  190 (442)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCC---chHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccC
Confidence            3477788899999998753  56899999   99999999985421    23 579999998988653321110     0


Q ss_pred             Ccc---CeeEEEeCCCCHHHHHHhhhc-----CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          164 RAC---NITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       164 ~~~---g~~v~~v~~~d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~  231 (450)
                      ..+   ...+..++.+|.+.+++.++.     +++.+|++|++....|.+.|    +++|.++|+++|+++|+||+++++
T Consensus       191 ~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~  270 (442)
T TIGR03372       191 KPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGM  270 (442)
T ss_pred             CCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCC
Confidence            001   123456677788888777731     46889999999999998887    999999999999999999999555


Q ss_pred             CC-------CccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHh-hhhhhccCCCchHHHHHHHHccCCcH
Q 013079          232 VL-------SPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH-QGALMLLGPTMNPKVAFELSERIPHL  302 (450)
Q Consensus       232 ~~-------~~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~-~~~~~~~g~~~~~~~a~~~~~~~~~l  302 (450)
                      ..       .-..+.+|+++  ++|.+|+ | .++ |.++.++++.+.+.... .+..+..|+.+...++...+..++. 
T Consensus       271 GRtG~~~a~e~~gv~PDivt--~gK~lg~-G~~Pi-gavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~-  345 (442)
T TIGR03372       271 GRTGKMFACEHEGVQPDILC--LAKALGG-GVMPI-GATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLE-  345 (442)
T ss_pred             CccccchhhhhcCCCCCeee--ehhhhcC-Ccccc-eEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHh-
Confidence            31       11223478877  9999984 5 467 66777788877763211 1112233333333333333332211 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013079          303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~  382 (450)
                      +...++..+..+++.+.|+++..+  +|..-            .+.+|.|.++.+++...+....+.+.+..   .|+ .
T Consensus       346 ~~l~~~~~~~G~~l~~~L~~l~~~--~~~~i------------~~vRG~Gl~~giel~~~~~~~~i~~~l~~---~Gv-l  407 (442)
T TIGR03372       346 KNLPAQAAIKGDFLLDGFQQLAAE--YPDLI------------IEARGKGLLMAIEFRDNEIGYAFAKELFQ---QNI-L  407 (442)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHh--CCCce------------EEEecceEEEEEEeCChHHHHHHHHHHHH---CCc-E
Confidence            112233445556666666553211  11000            02237889999999865555667777764   232 2


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ++..                         +...+.|||+.. ..-+++.++.+.++|++
T Consensus       408 ~~~~-------------------------~~~~~~lr~~Pp-l~~t~~~id~~~~~l~~  440 (442)
T TIGR03372       408 VAGT-------------------------LNNAKSIRIEPP-LTITIEQCALVIKAAKD  440 (442)
T ss_pred             Eeec-------------------------CCCCCEEEEECC-cccCHHHHHHHHHHHHH
Confidence            2110                         011367999999 87777778887777765

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.74  E-value=1.4e-15  Score=154.68  Aligned_cols=292  Identities=12%  Similarity=0.151  Sum_probs=181.0

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHhCCC-
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR-  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~-  164 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..|++....       +| .+||.....||+........... 
T Consensus        82 ~~~~~~~~la~~l~~~~p~~~~~v~f~~s---GseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~  158 (423)
T PRK05964         82 FTHEPAERLAQRLVALTPGGLDHVFFSDS---GSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRG  158 (423)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCc
Confidence            456777889999999874  468999999   99999999985421       23 57999999998865433211100 


Q ss_pred             -----ccC--eeEEEeCC--CC-----HHHHHHhhh--cCCceEEEEec-CCCCcccccC----HHHHHHHHHhcCCEEE
Q 013079          165 -----ACN--ITTTFVDI--SD-----HEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGVTVV  223 (450)
Q Consensus       165 -----~~g--~~v~~v~~--~d-----~~~l~~ai~--~~~t~lv~i~~-~~NptG~v~~----l~~I~~la~~~gi~li  223 (450)
                           ..+  ..+..++.  .|     ++++++.+.  .+++.+|++++ +++..|...+    +++|.++|++||+++|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI  238 (423)
T PRK05964        159 GMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLI  238 (423)
T ss_pred             cccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence                 000  11233333  24     778888773  24678899998 6888887754    9999999999999999


Q ss_pred             EeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH---hh--hhhhccCCCchHHH
Q 013079          224 VDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL---HQ--GALMLLGPTMNPKV  291 (450)
Q Consensus       224 vD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~---~~--~~~~~~g~~~~~~~  291 (450)
                      +||+++++..       ......+|+++  ++|.+++++.++ |+++.++++.+.+...   ..  +..+..++.+...+
T Consensus       239 ~DEv~tg~gr~G~~~a~~~~~v~pDi~~--~~K~l~gG~~p~-~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aa  315 (423)
T PRK05964        239 FDEIATGFGRTGTLFACEQAGVSPDIMC--LSKGLTGGYLPL-AATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAA  315 (423)
T ss_pred             EechhhCCCcCcchhHHHhcCCCCCeee--eehhhhcCcccc-eEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHH
Confidence            9999855531       11223467765  789998665787 7788898888877431   00  11112233333333


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHH
Q 013079          292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRL  368 (450)
Q Consensus       292 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~~  368 (450)
                      +...+..++. ....++..++.+++.+.|++...   .|.+.             +.+|.|.++.|++.+..   ....+
T Consensus       316 a~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~l~~---~~~i~-------------~vrg~Gl~~~i~l~~~~~~~~~~~l  378 (423)
T PRK05964        316 ANASLDLFED-EPVLERVAALSAGLAEGLEPFRD---LPGVA-------------DVRVLGAIGAVELDRPVLERDGPAL  378 (423)
T ss_pred             HHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhhcc---CCCeE-------------EeecccEEEEEEeccCcchhHHHHH
Confidence            3333222111 12344556666777777766421   12111             12267889999997432   24566


Q ss_pred             HHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          369 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       369 ~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      ...+..   .|+ .++.                            ..+.|||+.. ...++++++.+.++|++..
T Consensus       379 ~~~l~~---~Gv-~v~~----------------------------~~~~lR~~p~-l~~t~edId~~v~~l~~al  420 (423)
T PRK05964        379 RAFALE---RGV-LLRP----------------------------LGNTIYLMPP-YIITAEELDRITDAIVEVA  420 (423)
T ss_pred             HHHHHH---CCe-EEEe----------------------------cCCEEEEeCC-cccCHHHHHHHHHHHHHHH
Confidence            666654   232 2110                            0246999998 7777777777777776543

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.74  E-value=2.5e-15  Score=152.53  Aligned_cols=192  Identities=12%  Similarity=0.151  Sum_probs=128.6

Q ss_pred             CCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC----CCc
Q 013079           95 RHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF----PRA  165 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~----~~~  165 (450)
                      ...++...++.++|+++..   .+.++|++|   |+||+..|++...  ....+|+.....||+.........    +..
T Consensus        72 ~~~~~~~~~la~~l~~~~p~~~~~~v~f~~s---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~  148 (420)
T TIGR00700        72 VTPYEGYVALAEKLNRIAPGSGPKKSVFFNS---GAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYK  148 (420)
T ss_pred             ccCChHHHHHHHHHHHhCCCCCCCEEEEeCC---cHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccc
Confidence            3456777889999999874   257899999   9999999998542  223578888888988643322110    000


Q ss_pred             cCe-----eEEEeCCC----------------CHHHHHHhhh----cCCceEEEEecCCCCcccccC----HHHHHHHHH
Q 013079          166 CNI-----TTTFVDIS----------------DHEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAH  216 (450)
Q Consensus       166 ~g~-----~v~~v~~~----------------d~~~l~~ai~----~~~t~lv~i~~~~NptG~v~~----l~~I~~la~  216 (450)
                      .++     .+..++..                +++.+++.+.    .+++.+|++|.++..+|.+.+    +++|.++|+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~  228 (420)
T TIGR00700       149 SGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCR  228 (420)
T ss_pred             cCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHH
Confidence            111     12222221                2456666552    257889999999999998865    899999999


Q ss_pred             hcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH
Q 013079          217 DKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP  289 (450)
Q Consensus       217 ~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~  289 (450)
                      +||+++|+||+|+++...       ......|+++  ++|.++ +|+++ |++++++++++.+..... ..+..++.+.+
T Consensus       229 ~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~--lsK~l~-~G~pi-g~v~~~~~i~~~~~~~~~-~~T~~~~pl~~  303 (420)
T TIGR00700       229 EHGIVFIADEVQTGFARTGAMFACEHEGPEPDLIT--TAKSLA-DGLPL-SGVTGRAEIMDAPAPGGL-GGTYAGNPLAC  303 (420)
T ss_pred             HcCCEEEEEecccCCcccchhHHHhhcCCCCCEEE--eecccc-CCcce-EEEEecHHHHhhcCCCCc-CCCCCcCHHHH
Confidence            999999999999666421       1122467655  999999 78998 999999988877643222 22344444444


Q ss_pred             HHHHH
Q 013079          290 KVAFE  294 (450)
Q Consensus       290 ~~a~~  294 (450)
                      .++..
T Consensus       304 aaa~a  308 (420)
T TIGR00700       304 AAALA  308 (420)
T ss_pred             HHHHH
Confidence            44433

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.73  E-value=7.6e-16  Score=157.06  Aligned_cols=258  Identities=14%  Similarity=0.203  Sum_probs=164.2

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc--c--CC-CEEEEeCCCchhHHHHHHHhCCC----
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC--S--SG-GHVVAARTLYGGTHALLTHFFPR----  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~--~--~g-d~Vi~~~~~y~~~~~~~~~~~~~----  164 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..|++...  .  .| .+||+....||+...........    
T Consensus       121 ~~~~~~~~lae~L~~~~p~~~~~v~f~~S---GsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~  197 (459)
T PRK11522        121 LLDPLRAMLAKTLAALTPGKLKYSFFCNS---GTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFR  197 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCC---chHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccc
Confidence            347778889999999864  357899999   9999999998542  1  12 36888888898864332111000    


Q ss_pred             ----ccCeeEEEeCCCCHHHHHHhhhc-----CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          165 ----ACNITTTFVDISDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       165 ----~~g~~v~~v~~~d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~  231 (450)
                          .....+..++..|.+++++.+..     +++.+|++|++....|.+.|    ++++.++|+++|+++|+||+++++
T Consensus       198 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~  277 (459)
T PRK11522        198 KPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGM  277 (459)
T ss_pred             cCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecC
Confidence                00112345566688888887731     45789999999999999877    999999999999999999999555


Q ss_pred             CC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-hhhhhccCCCchHHHHHHHHccCCcHH
Q 013079          232 VL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALMLLGPTMNPKVAFELSERIPHLG  303 (450)
Q Consensus       232 ~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~~~g~~~~~~~a~~~~~~~~~l~  303 (450)
                      ..       ......+|+++  ++|.+|+.-.++ |.++.++++.+.+.... .+..+..|+.+...++.+.+..++.. 
T Consensus       278 GRtG~~~a~e~~gv~PDivt--~gK~lggG~~Pi-gav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~-  353 (459)
T PRK11522        278 GRTGKMFACEHENVQPDILC--LAKALGGGVMPI-GATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ-  353 (459)
T ss_pred             CccchhhhhhccCCCCCEEE--echhhhCCCccc-eeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc-
Confidence            31       11223478875  899999532567 66666777776553211 11222333444444444444333321 


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ...++..++.++|.+.|+++..+  +|..-            .+.+|.|.++.+++...+.+..+...+..
T Consensus       354 ~l~~~~~~~g~~l~~~L~~l~~~--~~~~i------------~~VrG~Gl~~giel~~~~~~~~i~~~l~~  410 (459)
T PRK11522        354 NLPAQAEQKGDYLLDGFRQLARE--YPDLV------------QEARGKGMLMAIEFVDNEIGYNFASEMFR  410 (459)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh--CCCce------------eeEEeceeEEEEEecCchHHHHHHHHHHH
Confidence            23455566667777777654211  11100            02337889999999865556667776664

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.73  E-value=1.5e-15  Score=153.47  Aligned_cols=293  Identities=13%  Similarity=0.125  Sum_probs=176.9

Q ss_pred             CChhHHHHHHHHHHHh--C--C-CeEEE-ecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC-----C
Q 013079           97 FNPTVLNLSRQMAALE--G--T-EAAYC-TASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF-----P  163 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~--g--~-~~~~~-tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~-----~  163 (450)
                      .++...++.++|+++.  +  . ..++| ++|   |+||+..|++...  ....+|+.....||+.........     .
T Consensus        76 ~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~s---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~  152 (412)
T TIGR02407        76 ATEAKREFLETFNEIILKPRGLDYKVQFPGPT---GTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKR  152 (412)
T ss_pred             CcHHHHHHHHHHHHhccCccCCCceEEEeCCC---chHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccc
Confidence            4677788888888874  1  2 24556 489   9999999998643  223579998989988654332110     1


Q ss_pred             CccC---eeEEEeCC--------CCHHHHHHhhhc-----CCceEEEEecCCCCccccc-C---HHHHHHHHHhcCCEEE
Q 013079          164 RACN---ITTTFVDI--------SDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVV  223 (450)
Q Consensus       164 ~~~g---~~v~~v~~--------~d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~-~---l~~I~~la~~~gi~li  223 (450)
                      ...+   ..+..++.        ++++.+++.+.+     +++.+|+++.++++.|.+. |   +++|.++|+++|+++|
T Consensus       153 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI  232 (412)
T TIGR02407       153 QGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLI  232 (412)
T ss_pred             cCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence            1011   12344443        236678877732     4578999999999999864 3   8899999999999999


Q ss_pred             EeCCCCCCC-------CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHH
Q 013079          224 VDNTFSPLV-------LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       224 vD~~~~~~~-------~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~  296 (450)
                      +||+|+++.       +....+..|+++  ++|.+++.|.++ |+++.++++ ..+... ....+..++.+...++...+
T Consensus       233 ~DEV~tG~GRtG~~~a~~~~~v~PDi~~--~~K~lg~~G~pi-gav~~~~~~-~~~~~~-~~~~T~~gnpl~~aaa~a~l  307 (412)
T TIGR02407       233 VDDIQAGCGRTGTFFSFEPAGIEPDIVC--LSKSISGYGLPL-ALTLIKPEL-DVWKPG-EHNGTFRGNNLAFVTATAAL  307 (412)
T ss_pred             EechhhCCCccchhHHhcccCCCCCEEE--echhccCCccce-eEEEEchhh-hccCCC-ccCCCCCccHHHHHHHHHHH
Confidence            999996553       222344678776  789999658998 888887765 433211 11112333333333333333


Q ss_pred             cc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc
Q 013079          297 ER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY  375 (450)
Q Consensus       297 ~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~  375 (450)
                      .. ++. ....++..+..+++.+.|+++...  +|....            +.+|.|.+++++++..+....+...+.. 
T Consensus       308 ~~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~--~~~~~~------------~vrg~Gl~~~l~l~~~~~~~~~~~~~~~-  371 (412)
T TIGR02407       308 EYYWSD-DAFEKAVQRKSEIIQERLDRIVAE--YPELIK------------QVRGRGLMQGIECGDGDLAGKIAKAAFE-  371 (412)
T ss_pred             HHHhcc-cHHHHHHHHHHHHHHHHHHHHHhh--CCCceE------------eeecceeEEEEEecChHHHHHHHHHHHH-
Confidence            32 221 122333444555565655532110  010000            1226788999999866556677777664 


Q ss_pred             ccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          376 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       376 ~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                        .| +.+...                         +...+.|||+.. ...+++.++.+.+++++.
T Consensus       372 --~G-v~v~~~-------------------------~~~~~~lr~~p~-l~~t~~~i~~~~~~l~~~  409 (412)
T TIGR02407       372 --NG-LIIETS-------------------------GPNDEVIKLLPP-LTIDEETLQQGLDILEQA  409 (412)
T ss_pred             --CC-CEEecc-------------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence              23 222110                         111367999999 877777777777777654

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.73  E-value=1.2e-15  Score=154.77  Aligned_cols=242  Identities=13%  Similarity=0.145  Sum_probs=154.8

Q ss_pred             CCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC----Cc
Q 013079           95 RHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP----RA  165 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~----~~  165 (450)
                      ...++...++.++|+++..   .+.++|++|   |+||+..|++...  ....+|+.....||+..........    ..
T Consensus        79 ~~~~~~~~~la~~l~~~~p~~~~~~~~f~~s---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~  155 (421)
T PRK06777         79 IVPYASYVTLAERINALAPIDGPAKTAFFTT---GAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYK  155 (421)
T ss_pred             ccCChHHHHHHHHHHHhCCCCCCceEEEeCC---cHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccc
Confidence            3456777888899998864   367899999   9999999998542  2235788888889887543321100    00


Q ss_pred             cCe-----eEEEeCCC----------CHHHHHHhhh----cCCceEEEEecCCCCcccc-cC---HHHHHHHHHhcCCEE
Q 013079          166 CNI-----TTTFVDIS----------DHEMVNSAIV----QGRTKVLYFESISNPTLAV-AN---IPELSRLAHDKGVTV  222 (450)
Q Consensus       166 ~g~-----~v~~v~~~----------d~~~l~~ai~----~~~t~lv~i~~~~NptG~v-~~---l~~I~~la~~~gi~l  222 (450)
                      .+.     .+..++..          +++.+++.+.    .+++.+|++|.++++.|.. .|   +++|.++|+++|+++
T Consensus       156 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~ll  235 (421)
T PRK06777        156 VGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILL  235 (421)
T ss_pred             cCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            010     11222211          2566777663    2467899999999998864 44   899999999999999


Q ss_pred             EEeCCCCCCCCCc-----cCC--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHH
Q 013079          223 VVDNTFSPLVLSP-----ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL  295 (450)
Q Consensus       223 ivD~~~~~~~~~~-----~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~  295 (450)
                      |+||+|+++....     ..+  ..|++  +++|.++ +|+++ |++++++++++.+..... ..+..++.+.+.++...
T Consensus       236 I~DEv~tg~gr~g~~~~~~~~~~~pDiv--~~sK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~p~~~aaa~a~  310 (421)
T PRK06777        236 IADEVQTGFARTGKLFAMEYYDVKPDLI--TMAKSLG-GGMPI-SAVVGRAEVMDAPAPGGL-GGTYAGNPLAVAAALAV  310 (421)
T ss_pred             EEechhhCCccCCchhhhhhcCCCCCEE--eeehhhc-CCCce-EEEEEcHHHHhccCCCCC-CCCCCcCHHHHHHHHHH
Confidence            9999996553211     112  36766  5999999 68998 899999888877653322 22344444444444444


Q ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          296 SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       296 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +..++. +...++.+++.+++.+.|+++..+  +|...             ..+|.|.++.+++.
T Consensus       311 L~~~~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~i~-------------~vrg~G~~~~i~~~  359 (421)
T PRK06777        311 LDVIAE-EKLCQRALILGAHLVEVLEKAKAS--CPAIV-------------DIRARGSMVAVEFN  359 (421)
T ss_pred             HHHHHh-ccHHHHHHHHHHHHHHHHHHHHHh--CCCeE-------------EecCceEEEEEEEe
Confidence            433222 234556677777888888764211  11100             12367888888774

>PLN02271 serine hydroxymethyltransferase

Probab=99.73  E-value=5.6e-15  Score=149.37  Aligned_cols=282  Identities=17%  Similarity=0.163  Sum_probs=176.7

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCCCCCCCccccC--CCChhHHHH----HHHHHHHhCCCe----E-EEecChHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSR--HFNPTVLNL----SRQMAALEGTEA----A-YCTASDKAGMS  128 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r--~~~~~~~~l----~~~iA~l~g~~~----~-~~tsg~~~gt~  128 (450)
                      .+.+|..++.+.+ +.+-..+...|..   +|.-.|  .+...++++    .++..+++|++.    + +---|   |+.
T Consensus       152 ~LIASEN~~S~av~~algS~ltnkYaE---G~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~S---Gs~  225 (586)
T PLN02271        152 ELIASENFVCRAVMEALGSHLTNKYSE---GMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYS---CTS  225 (586)
T ss_pred             eeccccccCCHHHHHHhcCcccccCCC---CCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeecc---HHH
Confidence            4556777766553 4444444444321   221112  133444433    345555778654    2 33347   999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCchhHHHHHHH-----hCCCccCee--EEEeCCC------CHHHHHHhhhcCCceEEEE
Q 013079          129 AISSVLMQLCSSGGHVVAARTLYGGTHALLTH-----FFPRACNIT--TTFVDIS------DHEMVNSAIVQGRTKVLYF  195 (450)
Q Consensus       129 ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~-----~~~~~~g~~--v~~v~~~------d~~~l~~ai~~~~t~lv~i  195 (450)
                      |+.+++.++++|||+|+..+..|++.......     ... ..|+.  +..++.+      |.+++++.+...++++|++
T Consensus       226 AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs-~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~  304 (586)
T PLN02271        226 ANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVS-GASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILIC  304 (586)
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccc-cccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEE
Confidence            99999999999999999999999887665310     011 13543  3332232      8999998443789999999


Q ss_pred             ecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCCccccCccceEEEEEcCHH--
Q 013079          196 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPAN--  267 (450)
Q Consensus       196 ~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~--  267 (450)
                      ....+|  ...|+++|.++|+++|+++++|.+| .++.     .+|.. ++|++++|.||++.+|-   ||+++.+++  
T Consensus       305 g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~-~aDvvt~TTHKtLrGPr---GG~I~~r~~~~  378 (586)
T PLN02271        305 GGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFD-YCDIVTSTTHKSLRGPR---GGIIFYRKGPK  378 (586)
T ss_pred             Cchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCc-CCcEEEeCCcccCCCCC---ceEEEeccccc
Confidence            887887  6789999999999999999999998 3332     13443 59999999999997664   466654432  


Q ss_pred             ------------------HHHHHHHHhhhhhhccCCCchHHHHHH-HHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013079          268 ------------------LVNSMMDLHQGALMLLGPTMNPKVAFE-LSE--RIPHLGLRMKEHCHRALIFARRMKKLGLK  326 (450)
Q Consensus       268 ------------------~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~  326 (450)
                                        +.+++....-. ....|+.....++.+ ++.  ....+....++..+|++.|++.|.+.|++
T Consensus       379 ~~~~g~~gs~s~~~~~~d~~~kI~~aVfP-glqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~  457 (586)
T PLN02271        379 LRKQGMLLSHGDDNSHYDFEEKINFAVFP-SLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRRKCR  457 (586)
T ss_pred             ccccCCccccccccccHHHHHHhhcccCC-ccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence                              33333322111 112222333322222 111  22345667777899999999999999998


Q ss_pred             eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013079          327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN  374 (450)
Q Consensus       327 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~~~~~l~~  374 (450)
                      +..-+..+                  .++.+++.    +...+++.++...+
T Consensus       458 vv~ggTdn------------------HlvLvDl~~~g~~G~~ae~~Le~~~I  491 (586)
T PLN02271        458 LVTGGTDN------------------HLLLWDLTTLGLTGKNYEKVCEMCHI  491 (586)
T ss_pred             EeeCCCCc------------------ceeeecCcccCCCHHHHHHHHHHcCe
Confidence            76544222                  26777775    34556666666553

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.73  E-value=2e-15  Score=154.44  Aligned_cols=259  Identities=17%  Similarity=0.123  Sum_probs=155.5

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCCCCCCC-ccccCCCChhHHHHHH----HHHHHhCCCe-EEEe----cChHHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELGPDRDF-FIYSRHFNPTVLNLSR----QMAALEGTEA-AYCT----ASDKAGMSA  129 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~-~~y~r~~~~~~~~l~~----~iA~l~g~~~-~~~t----sg~~~gt~a  129 (450)
                      .+.+|..++.+.+ +++...+...|+.-..+ -.|+  +....+++++    +..++++++. .+.+    .|   |+.|
T Consensus        38 ~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~--G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~S---G~~A  112 (475)
T PLN03226         38 ELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYG--GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLS---GSPA  112 (475)
T ss_pred             eEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcC--CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCc---hHHH
Confidence            4677888887764 77777775555432211 1222  2345555554    4566677654 3323    77   9999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCchhHHHHHHHh-CCCc--cCee--EEEeCCC------CHHHHHHhhhcCCceEEEEecC
Q 013079          130 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRA--CNIT--TTFVDIS------DHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       130 i~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~-~~~~--~g~~--v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      |..++.+++++||+|+..+...++........ ..+.  .+..  +..+..+      |+++|++.+...++++|++. .
T Consensus       113 N~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~-~  191 (475)
T PLN03226        113 NFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG-A  191 (475)
T ss_pred             HHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe-c
Confidence            99999999999999998554333332211000 0010  1211  1122223      99999998844577777652 2


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCC-CC----CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH--
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-VL----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN--  270 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~-~~----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~--  270 (450)
                      ++ ++...|+++|.++|+++|+++++|++| .++ ..    +|.. ++|++++|+||++.+|.   ||+++++++..+  
T Consensus       192 S~-~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~-~~Div~~t~hK~L~GP~---Gg~I~~~~~~~~~~  266 (475)
T PLN03226        192 SA-YPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFE-YCDVVTTTTHKSLRGPR---GGMIFFRKGPKPPK  266 (475)
T ss_pred             Cc-CCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCC-CCeEEEecCcccccCCC---ceEEEEchhhcccc
Confidence            33 678899999999999999999999998 333 22    2322 69999999999995443   477777665431  


Q ss_pred             ------------HHHHHhhhhhhccCCCchHHHHHH-HHccC--CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013079          271 ------------SMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKLGLKVLYPG  331 (450)
Q Consensus       271 ------------~l~~~~~~~~~~~g~~~~~~~a~~-~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~  331 (450)
                                  .+...+. .....++.+...++.. ++..+  .......++..++.++|.+.|++.|+++..++
T Consensus       267 ~~g~~~~~d~~~~i~~a~~-~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~  341 (475)
T PLN03226        267 GQGEGAVYDYEDKINFAVF-PGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGG  341 (475)
T ss_pred             cCCCccHHHHHHHhccccC-CccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCC
Confidence                        1111111 0111222222222221 22222  22445567788999999999999888776554

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.72  E-value=2e-15  Score=150.06  Aligned_cols=251  Identities=16%  Similarity=0.201  Sum_probs=159.0

Q ss_pred             hhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC----CC-----
Q 013079           99 PTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF----PR-----  164 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~----~~-----  164 (450)
                      +...++.++|.++...   +.++|++|   |++|+.+|++...  ..+..||.....||+.......+-    ++     
T Consensus        99 e~~v~~ae~L~~~~p~~~~~~~~f~~s---GaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~  175 (447)
T COG0160          99 EPYVELAEKLTALAPGSGLKKVFFGNS---GAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFG  175 (447)
T ss_pred             hhHHHHHHHHHHhCCcccCCeEEecCC---cHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCC
Confidence            5667788888887653   55899999   9999999998542  223578988888887543321110    00     


Q ss_pred             ccCeeEEEeCCC-----------------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC----HHHHHHHHHhc
Q 013079          165 ACNITTTFVDIS-----------------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDK  218 (450)
Q Consensus       165 ~~g~~v~~v~~~-----------------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~  218 (450)
                      .+...+..+|.+                 ..+.+++++..     .++.++++|+++.+.|.+.+    ++++.++|++|
T Consensus       176 ~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~  255 (447)
T COG0160         176 PLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREH  255 (447)
T ss_pred             CCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHc
Confidence            011224444432                 12334444422     35789999999999999865    88999999999


Q ss_pred             CCEEEEeCCCCCCCCC-----c--cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHH
Q 013079          219 GVTVVVDNTFSPLVLS-----P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV  291 (450)
Q Consensus       219 gi~livD~~~~~~~~~-----~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~  291 (450)
                      |+++|+||+|+++...     .  .....|+++  ++|.+|+ |.++ |.++.++++.+.......  .++.|+.+...+
T Consensus       256 gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt--~aK~ig~-G~Pl-~avv~r~ei~~~~~g~~~--~Tf~GNpva~Aa  329 (447)
T COG0160         256 GILLIADEVQTGFGRTGKMFAFEHFGVEPDIVT--LAKSLGG-GLPL-SAVVGRAEIMDWPPGGHG--GTFGGNPVACAA  329 (447)
T ss_pred             CCEEEEeccccCCCccccchhhhhcCCCCCEEE--ecccccC-CCce-eEEeccHHhcccCCcccC--CCCCcCHHHHHH
Confidence            9999999999666422     1  222478888  9999996 9998 888888888773222222  224455554444


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--------HH
Q 013079          292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------EE  363 (450)
Q Consensus       292 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--------~~  363 (450)
                      +.+.+.-++.. ...++..+.-+++.++|.++..+  +|.+.             +.+|.|.++.+++..        .+
T Consensus       330 a~AvL~vie~e-~L~~~a~~~G~~l~~~L~~l~~~--~~~Ig-------------dVRG~Glm~giE~v~d~~t~~p~~~  393 (447)
T COG0160         330 ALAVLDVIEEE-NLLERAAELGEYLRDRLEELQEK--HPLIG-------------DVRGLGLMIGVELVKDRDTKEPDAE  393 (447)
T ss_pred             HHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHhh--cCcee-------------cccccceEEEEEEecCCCCCCCCHH
Confidence            44443322221 23344455556666666654221  12111             445899999999862        24


Q ss_pred             HHHHHHHHhhc
Q 013079          364 KANRLMNYLQN  374 (450)
Q Consensus       364 ~~~~~~~~l~~  374 (450)
                      ...++++.+..
T Consensus       394 ~~~~i~~~~~~  404 (447)
T COG0160         394 LAAKIVARAFE  404 (447)
T ss_pred             HHHHHHHHHHH
Confidence            56667776664

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.72  E-value=3.5e-15  Score=151.55  Aligned_cols=299  Identities=15%  Similarity=0.134  Sum_probs=176.9

Q ss_pred             CChhHHHHHHHHHHHhC----CC-eEEEe-cChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHh-----CC
Q 013079           97 FNPTVLNLSRQMAALEG----TE-AAYCT-ASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF-----FP  163 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g----~~-~~~~t-sg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~-----~~  163 (450)
                      .++...++.++|++++.    .+ .++|+ +|   |+||+..|++...  ....+||+....||+........     ..
T Consensus        80 ~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~s---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~  156 (425)
T PRK09264         80 HTTAKREFLETFEETILKPRGLDYKVQFTGPT---GTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKR  156 (425)
T ss_pred             CcHHHHHHHHHHHHhhcCCcCCCceEEEeCCC---HHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccc
Confidence            45677888888888642    22 45564 79   9999999998542  22357888888898864322111     00


Q ss_pred             CccC---eeEEEeCC--------CCHHHHHHhhhc-----CCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEE
Q 013079          164 RACN---ITTTFVDI--------SDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVV  223 (450)
Q Consensus       164 ~~~g---~~v~~v~~--------~d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~li  223 (450)
                      ...+   ..+..++.        .|++++++.+.+     +++.+|++|.+....|.+.    .+++|.++|++||+++|
T Consensus       157 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI  236 (425)
T PRK09264        157 QGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLI  236 (425)
T ss_pred             cCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEE
Confidence            0011   12344444        267788887732     3578999999998888754    49999999999999999


Q ss_pred             EeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHH
Q 013079          224 VDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       224 vD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~  296 (450)
                      +||+++++..       ....+..|+++  ++|.+++.|.++ |+++.++++ ..+.... ...+..++.++..++...+
T Consensus       237 ~DEV~tG~GrtG~~~~~~~~~v~PDi~t--~~K~l~~~G~pi-gav~~~~~i-~~~~~~~-~~~T~~gnp~~~aaa~a~l  311 (425)
T PRK09264        237 VDDIQAGCGRTGTFFSFERAGITPDIVT--LSKSISGYGLPM-ALVLIKPEL-DVWKPGE-HNGTFRGNNLAFVTATAAL  311 (425)
T ss_pred             EechhhCCccccHHHHHhhcCCCCCEEE--eccccCCCccce-EEEEEchhh-hccCCCc-cCCCCCCCHHHHHHHHHHH
Confidence            9999965531       22234568765  689999768888 888877765 3332111 1122334433333332333


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079          297 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA  376 (450)
Q Consensus       297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~  376 (450)
                      .....-....++..++.+++.+.|+++..+  +|....            +.+|.|.+++++++.......+...+..  
T Consensus       312 ~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~--~~~~~~------------~vrg~Gl~~~i~l~~~~~~~~l~~~~~~--  375 (425)
T PRK09264        312 EEYWSDDAFEKEVKAKGELVRERLEEIAAK--YPGLGA------------EVRGRGMMQGIDFGDGELAGKIAAEAFE--  375 (425)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHh--CCCcee------------cceecccEEEEEecChHHHHHHHHHHHH--
Confidence            111111123344556666777766553111  111000            1226788999999866556677776654  


Q ss_pred             cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHhhhcCC
Q 013079          377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~~~~~~  447 (450)
                       .|+ .+...                         +.....|||+.. .    +++++.++.|.+++.++.++..
T Consensus       376 -~Gv-~~~~~-------------------------~~~~~~lr~~p~-l~~t~~ei~~~~~~l~~~l~~~~~~~~  422 (425)
T PRK09264        376 -NGL-IIETS-------------------------GPEDEVVKLLPP-LTIDEEELEEGLDILEEAVAEVLAEEE  422 (425)
T ss_pred             -CCC-EEecc-------------------------CCCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence             231 11110                         111357899866 4    4555566666777766654443

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.71  E-value=6.4e-15  Score=139.54  Aligned_cols=325  Identities=15%  Similarity=0.166  Sum_probs=206.8

Q ss_pred             cccccCccccCC-----HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHH
Q 013079           61 SIEASATFTVME-----PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLM  135 (450)
Q Consensus        61 pi~~att~~~~~-----~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~  135 (450)
                      .+..|..|.-.+     .++|.+.++.+-+...+.-..+ ..+....+|++.||++.+.+.+++++|   +--|+...+.
T Consensus       174 tVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIs-G~s~~hv~LE~eLA~LHqK~aALlFsS---CfVANDstLf  249 (570)
T KOG1360|consen  174 TVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNIS-GHSKHHVRLEAELADLHQKEAALLFSS---CFVANDSTLF  249 (570)
T ss_pred             EEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccC-CCCchhhhHHHHHHHHhcCcceeeeee---eeeccchHHH
Confidence            345555555443     3666666654422111111111 234556789999999999999888888   8888888887


Q ss_pred             Hhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHH
Q 013079          136 QLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPE  210 (450)
Q Consensus       136 ~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~  210 (450)
                      .|.+  ||-+|....-.|-+...-++     ..+++-.....+|++.|++.++.   .-+|+|.+|++++.+|.+.|++|
T Consensus       250 tLak~lpgcei~SD~gNHASMI~GIr-----ns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcplee  324 (570)
T KOG1360|consen  250 TLAKKLPGCEIFSDEGNHASMIQGIR-----NSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEE  324 (570)
T ss_pred             HHHHHCCCcEEeccccchHHHHHHhh-----hcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHH
Confidence            7643  56555555555555554443     13444444456799999998853   24789999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeCCC-CCCCC---------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh
Q 013079          211 LSRLAHDKGVTVVVDNTF-SPLVL---------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL  280 (450)
Q Consensus       211 I~~la~~~gi~livD~~~-~~~~~---------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~  280 (450)
                      |++++++||.+-.+||++ -++..         +......|++++++.|.||.    +|||+.....+++.++.+..+..
T Consensus       325 lcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc----VGGYIAat~~LvDmiRSyAaGFI  400 (570)
T KOG1360|consen  325 LCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC----VGGYIAATRKLVDMIRSYAAGFI  400 (570)
T ss_pred             HHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc----ccceehhhhhHHHHHHHhcCceE
Confidence            999999999999999997 22221         11122579999999999996    46999999999999988877553


Q ss_pred             hccCCCchH-HHHHHHHccCCcH--HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013079          281 MLLGPTMNP-KVAFELSERIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL  357 (450)
Q Consensus       281 ~~~g~~~~~-~~a~~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~  357 (450)
                      ..+...+.. ..|..+.+.++.-  ....+.++++..++.+.|.+.|+.|..     .|.               .++-+
T Consensus       401 FTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~-----~pS---------------HIiPv  460 (570)
T KOG1360|consen  401 FTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIP-----NPS---------------HIIPV  460 (570)
T ss_pred             EecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccC-----CCc---------------ceeee
Confidence            222222221 1222222222222  223344677888999999998875532     122               28888


Q ss_pred             EeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 013079          358 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEK  437 (450)
Q Consensus       358 ~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~  437 (450)
                      .+.+...+....+.|-.  .++ |+|-      .+..|...              .....+||... ...+.+..+.|.+
T Consensus       461 ~vgda~l~~~~sd~Li~--~h~-iYvQ------aINyPTV~--------------rG~E~LRiaPT-P~HT~~mm~~lv~  516 (570)
T KOG1360|consen  461 RVGDAALAKQASDILIS--KHN-IYVQ------AINYPTVA--------------RGTERLRIAPT-PHHTPQMMNILVN  516 (570)
T ss_pred             eccCHHHHHHHHHHHHH--hcC-eEEE------eccCCccc--------------ccceeeecCCC-CCCCHHHHHHHHH
Confidence            88766555555554432  122 2321      12222221              12467999888 7777777777777


Q ss_pred             HHHHh
Q 013079          438 ALSRM  442 (450)
Q Consensus       438 al~~~  442 (450)
                      +|..+
T Consensus       517 ~l~~v  521 (570)
T KOG1360|consen  517 ALLDV  521 (570)
T ss_pred             HHHHH
Confidence            66543

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.70  E-value=4.4e-15  Score=152.93  Aligned_cols=241  Identities=13%  Similarity=0.155  Sum_probs=149.4

Q ss_pred             CChhHHHHHHHHHHHhC-C--CeEEEecChHHHHHHHHHHHHHhc-------cCC-CEEEEeCCCchhHHHHHHHhCC--
Q 013079           97 FNPTVLNLSRQMAALEG-T--EAAYCTASDKAGMSAISSVLMQLC-------SSG-GHVVAARTLYGGTHALLTHFFP--  163 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g-~--~~~~~tsg~~~gt~ai~~al~~l~-------~~g-d~Vi~~~~~y~~~~~~~~~~~~--  163 (450)
                      .++...++.++|.+++. .  +.++|++|   |+||+..|++...       .++ ++||.....||+..........  
T Consensus       131 ~~~~~~~lae~L~~~~~~~~~~~v~f~~S---GsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~  207 (504)
T PLN02760        131 TTKPSLDLAKELLEMFTARKMGKVFFTNS---GSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLP  207 (504)
T ss_pred             CcHHHHHHHHHHHhhcCCCCCCEEEEeCC---hHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCCh
Confidence            46677889999888853 2  46899999   9999999998652       122 5788888888886432211000  


Q ss_pred             ---CccCe---eEEEeCCC----------C--------HHHHHHhhh---cCCceEEEEecCCCCcccccC----HHHHH
Q 013079          164 ---RACNI---TTTFVDIS----------D--------HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELS  212 (450)
Q Consensus       164 ---~~~g~---~v~~v~~~----------d--------~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~I~  212 (450)
                         ..++.   .+..++.+          +        .+++++.+.   .+++.+|++|.+....|.+.|    +++|.
T Consensus       208 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr  287 (504)
T PLN02760        208 ALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQ  287 (504)
T ss_pred             hhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHH
Confidence               00111   12222211          1        134666552   245789999999998899887    99999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh------hhh
Q 013079          213 RLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------QGA  279 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~~~  279 (450)
                      ++|++||+++|+||+++++..       ....+.+|+++  ++|.+|+...++ |.+++++++++.+....      .+.
T Consensus       288 ~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivt--lgK~lggG~~Pi-gAv~~~~~i~d~~~~~~~~~~~~~h~  364 (504)
T PLN02760        288 AVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVS--LAKALSSAYMPI-GAVLVSPEISDVIHSQSNKLGSFAHG  364 (504)
T ss_pred             HHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEE--ecccccCCcccc-ceEeecHHHHhhhhcccccccCcccC
Confidence            999999999999999966531       11223478766  899998543467 66888888887765310      112


Q ss_pred             hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       280 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                      .+..|+.++..++...+..++.. ...++.+++.++|.+.|+++. +  +|...             +.+|.|.++.+++
T Consensus       365 ~T~~gnPl~~Aaala~Le~i~~~-~l~~~~~~~g~~l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~gie~  427 (504)
T PLN02760        365 FTYSGHPVSCAVALEALKIYKER-NIPEHVNKIAPRFQDGIKAFS-G--SPIIG-------------EIRGTGLILGTEF  427 (504)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHh-c--CCCee-------------eEEeCceEEEEEE
Confidence            23444444444443333322211 234455666677777776541 1  11110             2347899999998


Q ss_pred             C
Q 013079          360 E  360 (450)
Q Consensus       360 ~  360 (450)
                      .
T Consensus       428 ~  428 (504)
T PLN02760        428 V  428 (504)
T ss_pred             e
Confidence            5

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.70  E-value=4e-15  Score=136.18  Aligned_cols=266  Identities=24%  Similarity=0.292  Sum_probs=184.2

Q ss_pred             CCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEE-eCCCchhHHHHHH------
Q 013079           87 DRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVA-ARTLYGGTHALLT------  159 (450)
Q Consensus        87 ~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~-~~~~y~~~~~~~~------  159 (450)
                      |+++|.|..   -.++.|++..|+.+|+|.+++-+-+.+||.||..+|.++++|||+.+. ...-|....+.+-      
T Consensus        56 ~stGYGydD---~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~  132 (416)
T COG4100          56 GSTGYGYDD---LGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQ  132 (416)
T ss_pred             CCCCCCccc---cchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCc
Confidence            455655543   345678889999999998766554444899999999999999999774 4455766655541      


Q ss_pred             HhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEe----cCCCCcccccCHHHHHHHHHhc--CCEEEEeCCC
Q 013079          160 HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFE----SISNPTLAVANIPELSRLAHDK--GVTVVVDNTF  228 (450)
Q Consensus       160 ~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~----~~~NptG~v~~l~~I~~la~~~--gi~livD~~~  228 (450)
                      ..+.. +|+...-++..     |.+.+..++ +++||+|.|.    ...-|.-.+.+++++.++.|+.  ++++.||++|
T Consensus       133 gSL~d-fgi~Y~~v~Lt~~gkiD~~~v~~~i-~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCY  210 (416)
T COG4100         133 GSLKD-FGIKYKAVPLTADGKIDIQAVKTAI-SDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCY  210 (416)
T ss_pred             ccHHH-hCcceeecccccCCcccHHHHHHhc-CccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence            11222 46666666654     899999999 8999999996    4566888888999999999874  7999999999


Q ss_pred             CCCC--CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh--hhhhhccCCCchHHHHHHHHccCCcHHH
Q 013079          229 SPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--QGALMLLGPTMNPKVAFELSERIPHLGL  304 (450)
Q Consensus       229 ~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--~~~~~~~g~~~~~~~a~~~~~~~~~l~~  304 (450)
                      +.|.  ..|...|+|++.+|+-|..|+.-...|||+.++.++++......  .+..+-.|.++.+.  ..+.+++---+.
T Consensus       211 GEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~yRlTaPGIG~e~Gat~~~l--~~myqGlFlAPh  288 (416)
T COG4100         211 GEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAYRLTAPGIGREGGATLYSL--REMYQGLFLAPH  288 (416)
T ss_pred             hhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhhceeeecCCccccccccHHHH--HHHHhhhccchH
Confidence            8885  46788899999999999999776668899999999998764221  11122223332221  222233333334


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          305 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ...+..+-+......|.+++..++ |. ...+..+             -+-++.|.+.+..-.|+.+++.
T Consensus       289 vv~qa~Kga~fta~~le~lg~~~~-P~-~~~kRtD-------------lIQavkf~~~eKmIaFcqaiQ~  343 (416)
T COG4100         289 VVSQAVKGAHFTARFLEKLGFPVN-PK-YDAKRTD-------------LIQAVKFGSKEKMIAFCQAIQA  343 (416)
T ss_pred             HHHHHhhhhHHHHHHHHHcCCCCC-Cc-ccccccc-------------hhhheecCCHHHHHHHHHHHhh
Confidence            444445555666667777776543 22 1222222             2566888888888899988874

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.70  E-value=1.6e-14  Score=143.98  Aligned_cols=223  Identities=14%  Similarity=0.105  Sum_probs=148.0

Q ss_pred             cccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH-HHHhCCCccCeeE
Q 013079           92 IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITT  170 (450)
Q Consensus        92 ~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~-~~~~~~~~~g~~v  170 (450)
                      .|+  +.|+..+|++.+++++|.+.+++|++   ||.|+++++...+++||.|  +...|...... +.     ..|...
T Consensus        73 ~Ya--gd~s~~~LE~~vAe~lG~e~aV~v~s---GTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~-----~~Ga~f  140 (460)
T PRK13237         73 AYA--GSRNFYHLEETVQEYYGFKHVVPTHQ---GRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQE-----LNGGIF  140 (460)
T ss_pred             hhc--CCCcHHHHHHHHHHHHCCCeEEEeCC---HHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHH-----hCCcEE
Confidence            355  67899999999999999999999999   9999998766668899964  55544444333 32     134422


Q ss_pred             EEe------------CC---CCHHHHHHhhhcC----CceEEEEecCCCCcc-ccc---CHHHHHHHHHhcCCEEEEeCC
Q 013079          171 TFV------------DI---SDHEMVNSAIVQG----RTKVLYFESISNPTL-AVA---NIPELSRLAHDKGVTVVVDNT  227 (450)
Q Consensus       171 ~~v------------~~---~d~~~l~~ai~~~----~t~lv~i~~~~NptG-~v~---~l~~I~~la~~~gi~livD~~  227 (450)
                      .-+            +.   .|+++|+++| ++    ++++|.++.++|..| ...   ++++|.++|+++|+++|.|.+
T Consensus       141 vDi~~d~a~~~~~~~p~tgnlD~d~Le~~I-~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaA  219 (460)
T PRK13237        141 VDIIIDEAHDAQSDHPFKGNVDLDKLQALI-DEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDAT  219 (460)
T ss_pred             EeeecccccccccCCCCCCCcCHHHHHHHh-ccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECc
Confidence            211            11   1899999999 43    355788888888884 443   689999999999999999999


Q ss_pred             C-CC---CC------CCccCC---------CCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhh--hhhhccCC
Q 013079          228 F-SP---LV------LSPARL---------GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQ--GALMLLGP  285 (450)
Q Consensus       228 ~-~~---~~------~~~~~~---------g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~--~~~~~~g~  285 (450)
                      . .+   +.      +.....         ..|.++.|++|.++.+   +||+++ .++++.++++...-  ......|+
T Consensus       220 ra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~---~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg  296 (460)
T PRK13237        220 RCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN---IGGFLAMNDEELFDEAKELVVVYEGMPSYGG  296 (460)
T ss_pred             chhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC---CceEEEECCHHHHHHHHHhccccCCCcCCCC
Confidence            6 22   11      111111         4799999999999875   368875 46788888876632  11111222


Q ss_pred             CchH-HHHHHHHccCCcHH-HHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013079          286 TMNP-KVAFELSERIPHLG-LRMKEHCHRALIFARRMKKLGLKVLYPG  331 (450)
Q Consensus       286 ~~~~-~~a~~~~~~~~~l~-~~~~~~~~~~~~l~~~L~~~~~~v~~p~  331 (450)
                       ++. ...+++.-..+... ...++.....++|.+.|.+.|..+..|.
T Consensus       297 -~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~Gvpv~~p~  343 (460)
T PRK13237        297 -MAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAAGVPIVEPV  343 (460)
T ss_pred             -hhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHCCCceecCC
Confidence             212 11111111112222 3444446677899999999998777764

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.70  E-value=1e-14  Score=148.65  Aligned_cols=255  Identities=13%  Similarity=0.177  Sum_probs=154.8

Q ss_pred             CCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC------C
Q 013079           96 HFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP------R  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~------~  164 (450)
                      ..++...++.++|+++...   +.++|++|   |+||+..|++...  ....+|+.....||+..........      .
T Consensus        82 ~~~~~~~~lae~L~~~~p~~~~~~v~f~~S---GseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~  158 (445)
T PRK08593         82 MYHEPLVRLAKKLCELAPGDFEKRVTFGLS---GSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRR  158 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCc---hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCccccc
Confidence            4578888999999998742   47899999   9999999998532  2235788888888886432211100      0


Q ss_pred             cc---CeeEEEeCCCC-----------------HHHHHHhhh----cCCceEEEEecCCCCcccccC----HHHHHHHHH
Q 013079          165 AC---NITTTFVDISD-----------------HEMVNSAIV----QGRTKVLYFESISNPTLAVAN----IPELSRLAH  216 (450)
Q Consensus       165 ~~---g~~v~~v~~~d-----------------~~~l~~ai~----~~~t~lv~i~~~~NptG~v~~----l~~I~~la~  216 (450)
                      ..   ...+..++..|                 ++++++.+.    .+++.+|++|++.+..|.+.+    +++|.++|+
T Consensus       159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~  238 (445)
T PRK08593        159 KYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCR  238 (445)
T ss_pred             CCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence            00   01123333221                 134444442    257899999999998898866    999999999


Q ss_pred             hcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH
Q 013079          217 DKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP  289 (450)
Q Consensus       217 ~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~  289 (450)
                      +||+++|+||+++++...       -..+..|+++  ++|.++ .|.++ |++++++++++.+... ....+..++.+..
T Consensus       239 ~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t--~gK~l~-~G~p~-gav~~~~~i~~~~~~~-~~~~T~~~~pl~~  313 (445)
T PRK08593        239 EHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMS--FGKSLA-GGMPM-SAIVGRKEIMESLEAP-AHLFTTGANPVSC  313 (445)
T ss_pred             HcCCEEEEechhhCCCcCchHHHHHhcCCCCCEee--eccccc-CCccc-EEEEEcHHHHhhhccC-CCCCCCCCCHHHH
Confidence            999999999998655321       1122467665  999998 46777 8888998888877422 1122233444333


Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--------
Q 013079          290 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--------  361 (450)
Q Consensus       290 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--------  361 (450)
                      .++...+..++. +...++..++.++|.+.|+++..+  +|...             +.+|.|.++.+++..        
T Consensus       314 aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~v~-------------~vrG~Gl~~gi~l~~~~~~~~~~  377 (445)
T PRK08593        314 AAALATIDMIED-ESLLQRSAEKGEYARKRFDQWVSK--YNFVG-------------DVRGYGLSIGIDIVSDKKLKTRD  377 (445)
T ss_pred             HHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--CCcEE-------------EEeccceEEEEEEecCCCcCCCc
Confidence            333333332221 123344455556666666553111  11100             234788898888742        


Q ss_pred             HHHHHHHHHHhhc
Q 013079          362 EEKANRLMNYLQN  374 (450)
Q Consensus       362 ~~~~~~~~~~l~~  374 (450)
                      ...+..+...+..
T Consensus       378 ~~~~~~~~~~~~~  390 (445)
T PRK08593        378 NEAALKICNYCFE  390 (445)
T ss_pred             HHHHHHHHHHHHH
Confidence            1234456665543

>PLN02880 tyrosine decarboxylase

Probab=99.70  E-value=9.2e-15  Score=150.23  Aligned_cols=244  Identities=17%  Similarity=0.149  Sum_probs=151.6

Q ss_pred             HHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe---------EEEecChHHHHHHHHHHHHHhcc-----C-
Q 013079           76 MRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA---------AYCTASDKAGMSAISSVLMQLCS-----S-  140 (450)
Q Consensus        76 ~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~---------~~~tsg~~~gt~ai~~al~~l~~-----~-  140 (450)
                      +.+++...+++....+..+......-+++-+.+++++|.+.         .++|+|   ||+||..++.....     . 
T Consensus        99 lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsg---gs~anl~al~~AR~~~~~~~g  175 (490)
T PLN02880         99 LGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGT---ASEAVLVVLLAARDRVLRKVG  175 (490)
T ss_pred             HHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCc---cHHHHHHHHHHHHHHHHHHhc
Confidence            33344444544333344333333444566677888887543         589999   99999888865321     1 


Q ss_pred             ----CC-EEEEeCCCchhHHHHHHHhCCCccCe---eEEEeCCC-------CHHHHHHhhhcC-----CceEEEEecCCC
Q 013079          141 ----GG-HVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-------DHEMVNSAIVQG-----RTKVLYFESISN  200 (450)
Q Consensus       141 ----gd-~Vi~~~~~y~~~~~~~~~~~~~~~g~---~v~~v~~~-------d~~~l~~ai~~~-----~t~lv~i~~~~N  200 (450)
                          .. .|++++..|.++...+.     ++|+   .++.|+.+       |+++|+++|++.     .+-+|+.+..+.
T Consensus       176 ~~~~~~~vv~~S~~aH~Sv~Kaa~-----~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT  250 (490)
T PLN02880        176 KNALEKLVVYASDQTHSALQKACQ-----IAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTT  250 (490)
T ss_pred             ccccCCeEEEEcCCchHHHHHHHH-----HcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCC
Confidence                12 45578888999988875     2444   23444432       889999988321     245566667788


Q ss_pred             CcccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCc------cC-CCCeEEEeCCCCccccCccceEEEEEcC-HH-HHH
Q 013079          201 PTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSP------AR-LGADVVVHSISKFISGGADIIAGAVCGP-AN-LVN  270 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~------~~-~g~di~~~S~sK~~g~~g~~igG~l~~~-~~-~~~  270 (450)
                      .+|.+.|+++|+++|+++|+++|||++|++. ...+      .. .++|.++.++||++..|-. . |+++.+ .. +..
T Consensus       251 ~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~-~-g~llvr~~~~l~~  328 (490)
T PLN02880        251 SSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFD-C-SLLWVKDRNALIQ  328 (490)
T ss_pred             cCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCcc-E-EEEEEeCHHHHHH
Confidence            9999999999999999999999999999443 2221      12 2689999999999986643 3 666543 32 223


Q ss_pred             HHHHHhhhhhhc-----------------cCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCC
Q 013079          271 SMMDLHQGALML-----------------LGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYP  330 (450)
Q Consensus       271 ~l~~~~~~~~~~-----------------~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p  330 (450)
                      .+... ..+...                 .+-.......|..++  +.+.+.+++++..++++++.+.|++.+. ++..|
T Consensus       329 ~~~~~-~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~  407 (490)
T PLN02880        329 SLSTN-PEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP  407 (490)
T ss_pred             HHccC-HHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence            22110 000000                 111111333333332  4456777788888999999999988754 55444

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.69  E-value=9.4e-15  Score=149.15  Aligned_cols=255  Identities=14%  Similarity=0.162  Sum_probs=156.1

Q ss_pred             CCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC----Ccc
Q 013079           96 HFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP----RAC  166 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~----~~~  166 (450)
                      ..++...++.++|+++...   +.++|++|   |++|+..+++...  ...++||+....||+..........    ...
T Consensus        96 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~s---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~  172 (443)
T PRK06058         96 TPYEGYVAVAEQLNRLTPGDHEKRSALFNS---GAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKS  172 (443)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEEeCC---cHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCccccc
Confidence            4567778899999988742   47899999   9999999998431  2346899999999987643321100    000


Q ss_pred             Ce-----eEEEeCC----CC---------------HHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhc
Q 013079          167 NI-----TTTFVDI----SD---------------HEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDK  218 (450)
Q Consensus       167 g~-----~v~~v~~----~d---------------~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~  218 (450)
                      ++     .+..++.    .+               ++.+++.+..+++++|++|.++...|.+.|    +++|.++|++|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~  252 (443)
T PRK06058        173 GFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCREN  252 (443)
T ss_pred             ccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence            10     1122211    11               222334442367889999988877777754    99999999999


Q ss_pred             CCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHH
Q 013079          219 GVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV  291 (450)
Q Consensus       219 gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~  291 (450)
                      |+++|+||+++++...       ......|+++  ++|.++ .|.++ |++++++++++.+..... ..+..|+.+++.+
T Consensus       253 gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~--~gK~l~-~G~Pi-~av~~~~~i~~~~~~~~~-~~T~~gnpl~~aa  327 (443)
T PRK06058        253 GVVFIADEVQTGFARTGAWFACEHEGIVPDLIT--TAKGIA-GGLPL-SAVTGRAEIMDAPHPGGL-GGTYGGNPVACAA  327 (443)
T ss_pred             CCEEEEeccccCCCcChhhhHHHhcCCCCCEEE--Eccccc-CCCcc-EEEEEcHHHHhhccCCCC-CCCCCCCHHHHHH
Confidence            9999999999666321       1123468887  679999 57998 888888888877643322 2234455555444


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------HHH
Q 013079          292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------EEK  364 (450)
Q Consensus       292 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------~~~  364 (450)
                      +...+..++. ....++..++.+++.+.|+++..+  +|...             +.+|.|.++.+++..       .+.
T Consensus       328 a~a~L~~~~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~i~-------------~vrg~G~~~~i~~~~~~~~~~~~~~  391 (443)
T PRK06058        328 ALAAIETIEE-DDLVARARQIEALMTDRLRALAAE--DDRIG-------------DVRGRGAMIAIELVKPGTTEPDAEL  391 (443)
T ss_pred             HHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhh--CCcEE-------------eeeccceEEEEEEecCCCCCCcHHH
Confidence            4444432221 123344555566777777653211  11000             223788899998842       223


Q ss_pred             HHHHHHHhhc
Q 013079          365 ANRLMNYLQN  374 (450)
Q Consensus       365 ~~~~~~~l~~  374 (450)
                      +..++..+..
T Consensus       392 ~~~l~~~~~~  401 (443)
T PRK06058        392 TKALAAAAHA  401 (443)
T ss_pred             HHHHHHHHHH
Confidence            4556655543

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.69  E-value=5.5e-15  Score=149.76  Aligned_cols=298  Identities=12%  Similarity=0.132  Sum_probs=176.1

Q ss_pred             CCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHh------CC
Q 013079           95 RHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF------FP  163 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~------~~  163 (450)
                      ...++...++.++|+++...   +.++|++|   |+||+..|++...  ....+|+.....||+........      ..
T Consensus        79 ~~~~~~~~~la~~l~~~~p~~~~~~v~f~~S---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~  155 (425)
T PRK07495         79 VVPYENYVRLAERLNALVPGDFAKKTIFVTT---GAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYK  155 (425)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCCEEEECCc---hHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccc
Confidence            45577788899999998753   57899999   9999999998542  22357898888898864322111      00


Q ss_pred             CccC---eeEEEeCCCC----------HHHHHHhhh----cCCceEEEEecCCCCccccc-C---HHHHHHHHHhcCCEE
Q 013079          164 RACN---ITTTFVDISD----------HEMVNSAIV----QGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTV  222 (450)
Q Consensus       164 ~~~g---~~v~~v~~~d----------~~~l~~ai~----~~~t~lv~i~~~~NptG~v~-~---l~~I~~la~~~gi~l  222 (450)
                      ..++   ..+.+++.++          ++++++.+.    .+++++|+++.++..+|.+. |   +++|.++|++||+++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~ll  235 (425)
T PRK07495        156 VGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILL  235 (425)
T ss_pred             cCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence            0011   1233444322          455566652    24688999999887788553 2   889999999999999


Q ss_pred             EEeCCCCCCCCCc-----cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc
Q 013079          223 VVDNTFSPLVLSP-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE  297 (450)
Q Consensus       223 ivD~~~~~~~~~~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~  297 (450)
                      |+||+|+++....     ...+...-+.+++|.++ .|.++ |++++++++++.+..... ..+..++.+.+.++...+.
T Consensus       236 I~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~-~G~pi-gav~~~~~i~~~~~~~~~-~~T~~~~pl~~aaa~a~l~  312 (425)
T PRK07495        236 IADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLA-GGFPL-AAVTGRAEIMDAPGPGGL-GGTYGGNPLGIAAAHAVLD  312 (425)
T ss_pred             EEechhhcCCcCCCceeecccCCCCCEEeehhhhc-CCccc-eEEEEcHHHHhccCCCCc-CCCCCCCHHHHHHHHHHHH
Confidence            9999986553221     11233333455999999 57888 889999888877643221 2223344444443333333


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-------HHHHHHHH
Q 013079          298 RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-------EKANRLMN  370 (450)
Q Consensus       298 ~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-------~~~~~~~~  370 (450)
                      .++. ....++..++.+++.+.|+++-.+  +|...             +.+|.|.++++++...       .....+..
T Consensus       313 ~l~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~i~-------------~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~  376 (425)
T PRK07495        313 VIEE-EDLCERANQLGNRLKQRLASLRET--VPEIA-------------DIRGPGFMNAVEFNDADSGLPSAEFANRVRL  376 (425)
T ss_pred             HHHh-chHHHHHHHHHHHHHHHHHHHHhh--CCCee-------------eeecCceEEEEEEecCCCCCccHHHHHHHHH
Confidence            2211 123344455666666666653211  12110             2236788999998531       12344555


Q ss_pred             HhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CCCHHHHHHHHHHHHHHhh
Q 013079          371 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       371 ~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~~~~~~i~~l~~al~~~~  443 (450)
                      .+..   .|++....|                          ...+.|||...+   .++.++.++.|.++|.+++
T Consensus       377 ~~~~---~Gvl~~~~g--------------------------~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~  423 (425)
T PRK07495        377 KALE---KGLILLTCG--------------------------VHGNVIRFLAPITIQDDVFAEALDILEASILEAS  423 (425)
T ss_pred             HHHH---CCeEEeecC--------------------------CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence            5443   232211001                          113668888661   3556666677777776553

>PLN02263 serine decarboxylase

Probab=99.69  E-value=2.2e-14  Score=144.20  Aligned_cols=235  Identities=14%  Similarity=0.124  Sum_probs=160.5

Q ss_pred             CCCCCCCCccccC---CCChhHHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchh
Q 013079           83 ELGPDRDFFIYSR---HFNPTVLNLSRQMAALEGTEA----AYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGG  153 (450)
Q Consensus        83 ~~~n~~~~~~y~r---~~~~~~~~l~~~iA~l~g~~~----~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~  153 (450)
                      .++|-...+.++.   .....-.++-+.+++++|.+.    -++|+|   |||||..++....+  +...++++...|.+
T Consensus       114 ~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsG---GTEaNL~Al~aARe~~~~~vvy~S~~aH~S  190 (470)
T PLN02263        114 SINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNC---GTEGNLHGILVGREVFPDGILYASRESHYS  190 (470)
T ss_pred             hccCCCCccccCCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCc---HHHHHHHHHHHHHhhcCCcEEEEcCCccHH
Confidence            3344333344443   344445667778888888632    599999   99999999876532  23468889999999


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCC--ceEEEEecCCCCcccccCHHHHHHHHHhcCC-----E
Q 013079          154 THALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGR--TKVLYFESISNPTLAVANIPELSRLAHDKGV-----T  221 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~--t~lv~i~~~~NptG~v~~l~~I~~la~~~gi-----~  221 (450)
                      +...+.     ++|++++.|+.+     |+++|+++|..+.  +-+|+.+..+.++|.+.|+++|+++|+++|+     +
T Consensus       191 v~KAa~-----llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iw  265 (470)
T PLN02263        191 VFKAAR-----MYRMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFY  265 (470)
T ss_pred             HHHHHH-----hcCCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCee
Confidence            998885     467777777765     8999999883322  4566677788899999999999999999997     9


Q ss_pred             EEEeCCCCCCCC----Cc--cC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH----hhhhhhccCCCc--
Q 013079          222 VVVDNTFSPLVL----SP--AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL----HQGALMLLGPTM--  287 (450)
Q Consensus       222 livD~~~~~~~~----~~--~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~----~~~~~~~~g~~~--  287 (450)
                      +|||++|+++..    ..  .+  .++|-++.+.||+++.|-. . |+++.+......+...    ........|+-.  
T Consensus       266 lHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~-c-gvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~  343 (470)
T PLN02263        266 IHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMP-C-GVQITRMEHINVLSSNVEYLASRDATIMGSRNGH  343 (470)
T ss_pred             EEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcC-E-EEEEEehhhHhhhccChHhhCCCCCCcCCCCCcH
Confidence            999999955432    11  11  1489999999999996643 3 6665555444333111    000001222222  


Q ss_pred             hHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013079          288 NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKV  327 (450)
Q Consensus       288 ~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v  327 (450)
                      ....+|..++  +.+.+.+++++..++++++.++|++.+...
T Consensus       344 ~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~  385 (470)
T PLN02263        344 APIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISA  385 (470)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            2344555444  445678888889999999999999988743

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.69  E-value=1.2e-14  Score=148.08  Aligned_cols=287  Identities=14%  Similarity=0.179  Sum_probs=174.1

Q ss_pred             CCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC--------
Q 013079           96 HFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF--------  162 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~--------  162 (450)
                      +.++...++.++|+++..   .+.++|++|   |+||+..|++...  ...++|+.....||+.........        
T Consensus        94 ~~~~~~~~lAe~L~~~~p~~~~~~v~f~~S---GsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~  170 (441)
T PRK05769         94 FYYEPAVELAERLVEIAPGGFEKKVFFTNS---GTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRK  170 (441)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCc---hHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCccccc
Confidence            456778899999999875   367899999   9999999998542  223578888888888654321110        


Q ss_pred             ---CCccCeeEEEeCCC----------C--------HHHHHH-hhh----cCCceEEEEecCCCCcccccC----HHHHH
Q 013079          163 ---PRACNITTTFVDIS----------D--------HEMVNS-AIV----QGRTKVLYFESISNPTLAVAN----IPELS  212 (450)
Q Consensus       163 ---~~~~g~~v~~v~~~----------d--------~~~l~~-ai~----~~~t~lv~i~~~~NptG~v~~----l~~I~  212 (450)
                         +...|  +..++..          +        ++.+++ .+.    .+++.+|++|.++...|.+.|    +++|.
T Consensus       171 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~  248 (441)
T PRK05769        171 GFFPLMPG--VIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELR  248 (441)
T ss_pred             CCCCCCCC--eEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHH
Confidence               10012  2233221          1        233554 221    246889999999999999888    99999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCC
Q 013079          213 RLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP  285 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~  285 (450)
                      ++|+++|+++|+||+++++...       ...+..|+++  ++|.++ .|.++ |++++++++...+...  ...+..++
T Consensus       249 ~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt--~~K~l~-~G~p~-gav~~~~~i~~~~~~~--~~~T~~g~  322 (441)
T PRK05769        249 KLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIIT--LAKAIA-GGLPL-GAVIGRAELMFLPPGS--HANTFGGN  322 (441)
T ss_pred             HHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEE--Eccccc-CCccc-EEEEEehhhhhcCCCC--CCCCCCcC
Confidence            9999999999999998655321       1122468876  789999 46887 8888887776432211  12223444


Q ss_pred             CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---
Q 013079          286 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---  362 (450)
Q Consensus       286 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---  362 (450)
                      .+...++...+..++.  ...++..++.++|.+.|+++..+...+.               +.+|.|.++.+++...   
T Consensus       323 p~~~aaa~a~L~~l~~--~~~~~~~~~g~~l~~~L~~l~~~~~~~~---------------~vrg~G~~~~i~~~~~~~~  385 (441)
T PRK05769        323 PVAAAAALATLEELEE--GLLENAQKLGEYLRKELKELKEKYEFIG---------------DVRGLGLMIGVELVKDRKE  385 (441)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCee---------------eeecceEEEEEEeccCCcc
Confidence            4444444333333332  3445556666777777765421111111               2237888999998521   


Q ss_pred             ---HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          363 ---EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       363 ---~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                         .....+...+..   .|++...                            .....|||+.. ...+++.++.+.+++
T Consensus       386 ~~~~~~~~~~~~~~~---~Gil~~~----------------------------~~~~~lr~~p~-l~~t~~~id~~~~~l  433 (441)
T PRK05769        386 PDPKLRDKVLYEAFK---RGLLLLG----------------------------AGKSAIRIIPP-LIITEEEADIGLEIL  433 (441)
T ss_pred             ccHHHHHHHHHHHHh---CCcEEec----------------------------CCCCEEEEeCC-CCCCHHHHHHHHHHH
Confidence               234455555543   2321100                            01356899988 755666666655555


Q ss_pred             HHh
Q 013079          440 SRM  442 (450)
Q Consensus       440 ~~~  442 (450)
                      ++.
T Consensus       434 ~~~  436 (441)
T PRK05769        434 EEA  436 (441)
T ss_pred             HHH
Confidence            543

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.69  E-value=1.2e-14  Score=141.89  Aligned_cols=243  Identities=15%  Similarity=0.192  Sum_probs=159.6

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCC-CeEEEecChHHHHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhC-----
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGT-EAAYCTASDKAGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFF-----  162 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~-~~~~~tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~-----  162 (450)
                      ..||.- .+.--++.+.|.++.+. |.+-|++|   ||||...+++..  ....|+|+...-+||+....+-.-.     
T Consensus        86 ~~fg~P-te~Ei~~Aell~~~~p~~e~vrfvnS---GTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~  161 (432)
T COG0001          86 LSFGAP-TELEVELAELLIERVPSIEKVRFVNS---GTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAA  161 (432)
T ss_pred             CCCCCC-CHHHHHHHHHHHHhcCcccEEEEecc---hhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcc
Confidence            345642 23334555677777765 88999999   999999999753  2234799999999998776653110     


Q ss_pred             ----CCccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeC
Q 013079          163 ----PRACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDN  226 (450)
Q Consensus       163 ----~~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~  226 (450)
                          +...|+      .+..++.+|++.++++++.  ++..+|++|.+....|.|.|    +++|.++|+++|+++|.||
T Consensus       162 t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DE  241 (432)
T COG0001         162 TLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDE  241 (432)
T ss_pred             cCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEec
Confidence                111122      2334556699999999854  37899999998888899876    8899999999999999999


Q ss_pred             CCCCCCCC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHcc
Q 013079          227 TFSPLVLS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSER  298 (450)
Q Consensus       227 ~~~~~~~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~  298 (450)
                      +.+++...      ...+.+|+.+  +.|.+| .|.++ |++.++.++++.+.....  +..+..|+.++..+....+..
T Consensus       242 ViTGFR~~~gGaq~~~gi~PDltt--lGKiIG-GGlP~-ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~  317 (432)
T COG0001         242 VITGFRVALGGAQGYYGVEPDLTT--LGKIIG-GGLPI-GAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEE  317 (432)
T ss_pred             chhhcccCCcccccccCcCcchhh--hhhhhc-CCcce-eeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHH
Confidence            98666543      2233467776  999999 68888 999999999987754322  122344554444444443333


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHH----HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          299 IPHLGLRMKEHCHRALIFARRM----KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       299 ~~~l~~~~~~~~~~~~~l~~~L----~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +...+..++++.++.++|.+.|    .+++..+...                   +.|.++.|.|.
T Consensus       318 l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~-------------------~~gsm~~i~F~  364 (432)
T COG0001         318 LMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVN-------------------RVGSMFGIFFT  364 (432)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-------------------eecceEEEEec
Confidence            3221113444445555555555    4455433221                   35668888775

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.69  E-value=6.4e-15  Score=145.89  Aligned_cols=164  Identities=19%  Similarity=0.210  Sum_probs=124.4

Q ss_pred             CCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc-cCC-CEEEEeCCCchhHHHHHHH----------hC
Q 013079           95 RHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC-SSG-GHVVAARTLYGGTHALLTH----------FF  162 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~-~~g-d~Vi~~~~~y~~~~~~~~~----------~~  162 (450)
                      .+.++...++.++++++.+.+.++|++|   |++|+.++++... ..| ++||+....|++.......          +.
T Consensus        62 ~~~~~~~~~la~~l~~~~~~~~v~~~~S---GseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~  138 (364)
T PRK04013         62 MFEHEEKEEMLEELSKWVNYEYVYMGNS---GTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFE  138 (364)
T ss_pred             CcCCHHHHHHHHHHHhhcCCCEEEEeCc---hHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCC
Confidence            3457888999999999988889999999   9999999998652 234 7899999999886533211          01


Q ss_pred             CCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc-C---HHHHHHHHHhcCCEEEEeCCCCCCCC-----
Q 013079          163 PRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA-N---IPELSRLAHDKGVTVVVDNTFSPLVL-----  233 (450)
Q Consensus       163 ~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~-~---l~~I~~la~~~gi~livD~~~~~~~~-----  233 (450)
                      +.  -..+.+++.+|++.+++.+ .+++++|++++.+...|.+. |   +++|.++|+++|+++|.||+++++..     
T Consensus       139 p~--~~~~~~~~~~d~~~l~~~i-~~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a  215 (364)
T PRK04013        139 PL--VPGFKHIPFNDVEAAKEAI-TKETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLA  215 (364)
T ss_pred             CC--CCCcEEecCCCHHHHHHHh-cCCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhH
Confidence            11  1234556667899999999 78899999999998888764 4   99999999999999999999855421     


Q ss_pred             -CccCCCCeEEEeCCCCccccCccceEEEEEcCHHH
Q 013079          234 -SPARLGADVVVHSISKFISGGADIIAGAVCGPANL  268 (450)
Q Consensus       234 -~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~  268 (450)
                       ....+..|+++  ++|.+++ |.++ |.++.+.++
T Consensus       216 ~~~~gv~PDiv~--~gK~lgg-G~P~-~a~~~~~~~  247 (364)
T PRK04013        216 IEHYKVEPDIVT--MGKGIGN-GVPV-SLTLTNFDV  247 (364)
T ss_pred             HHhcCCCCCEEE--ecccccC-Ccee-EEEEecccc
Confidence             11233578888  7999996 6888 656555444

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.69  E-value=1.1e-14  Score=156.28  Aligned_cols=220  Identities=16%  Similarity=0.148  Sum_probs=151.6

Q ss_pred             ChhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079           98 NPTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      .....++++.|+++.|-+.+ +..++   |+.|..+++.++..        ..+.|+++...|+.....+.     ..|+
T Consensus       529 lq~i~elq~~l~eltGmd~~Sl~p~a---GA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~-----~~G~  600 (939)
T TIGR00461       529 QELIAQLEKWLCSITGFDAISLQPNS---GAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAA-----MAGM  600 (939)
T ss_pred             HHHHHHHHHHHHHHHCCCCcccCCch---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHH-----HCCC
Confidence            35678999999999998875 66667   77777655554421        23578899999966655553     3688


Q ss_pred             eEEEeCCC-----CHHHHHHhhhc--CCceEEEEecCCCCcccccC-HHHHHHHHHhcCCEEEEeCCC-C-CC-CCCccC
Q 013079          169 TTTFVDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTF-S-PL-VLSPAR  237 (450)
Q Consensus       169 ~v~~v~~~-----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~-l~~I~~la~~~gi~livD~~~-~-~~-~~~~~~  237 (450)
                      +++.++.+     |+++|++++..  +++++|.+++|+| +|.+.| +++|+++||++|.++++|.++ . .. ..+|.+
T Consensus       601 ~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~  679 (939)
T TIGR00461       601 QVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGD  679 (939)
T ss_pred             EEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccc
Confidence            98888764     89999999932  4899999999999 799977 999999999999999999998 2 22 346678


Q ss_pred             CCCeEEEeCCCCccc------cCccceEEEEEcCHHHHHHHHHH----------hhh---h--hhccCCCchHHHHHH--
Q 013079          238 LGADVVVHSISKFIS------GGADIIAGAVCGPANLVNSMMDL----------HQG---A--LMLLGPTMNPKVAFE--  294 (450)
Q Consensus       238 ~g~di~~~S~sK~~g------~~g~~igG~l~~~~~~~~~l~~~----------~~~---~--~~~~g~~~~~~~a~~--  294 (450)
                      +|+|++++|.||.++      |||  + |++..++.+...+-..          +..   .  ...++.......++.  
T Consensus       680 ~GaDi~~~s~HKtf~~P~G~GGPg--~-G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi  756 (939)
T TIGR00461       680 LGADVCHLNLHKTFCIPHGGGGPG--M-GPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYI  756 (939)
T ss_pred             cCCCEEEecCCccCCCCCCCCCCC--e-EEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHH
Confidence            899999999999655      333  4 8888776544332110          000   0  001122122233333  


Q ss_pred             HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079          295 LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP  330 (450)
Q Consensus       295 ~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p  330 (450)
                      ...+.+.+.+..+....+++++.++|++ +.++.++
T Consensus       757 ~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~  791 (939)
T TIGR00461       757 KMMGNEGLPKASVVAILNANYMATRLKD-HYPILFV  791 (939)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCccccc
Confidence            2224455666666677889999999987 3355454

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK06105 aminotransferase; Provisional

Probab=99.69  E-value=6.8e-15  Score=150.48  Aligned_cols=245  Identities=14%  Similarity=0.184  Sum_probs=153.5

Q ss_pred             ccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc------c-C-CCEEEEeCCCchhHHHHHHHhC
Q 013079           93 YSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC------S-S-GGHVVAARTLYGGTHALLTHFF  162 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~------~-~-gd~Vi~~~~~y~~~~~~~~~~~  162 (450)
                      +++..++...++.++|+++...  +.++|++|   |+||+.+|++...      . + ..+|+.....||+.........
T Consensus        86 ~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~S---GseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t  162 (460)
T PRK06105         86 FSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNS---GSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLT  162 (460)
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheecc
Confidence            3345677888899999998743  57899999   9999999998642      1 2 2478888888888643221000


Q ss_pred             C-----CccC---eeEEEeCCC------------------CHHHHHHhhh---cCCceEEEEecCCCCcccccC----HH
Q 013079          163 P-----RACN---ITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IP  209 (450)
Q Consensus       163 ~-----~~~g---~~v~~v~~~------------------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~  209 (450)
                      .     +.++   ..+..++..                  ..+++++.+.   .+++.+|++|.++...|.+.+    ++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~  242 (460)
T PRK06105        163 GLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWE  242 (460)
T ss_pred             CCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHH
Confidence            0     0011   112222221                  1355666662   246789999999988898876    99


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh-----
Q 013079          210 ELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----  277 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-----  277 (450)
                      +|.++|++||+++|+||+++++..       .-..+.+|+++  ++|.+++...++ |+++.++++++.+.....     
T Consensus       243 ~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~--~gK~lggG~~P~-~av~~~~~i~~~~~~~~~~~~~~  319 (460)
T PRK06105        243 KIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILV--MSKQLSSSYQPL-SAVLMNEKVYDPIADESGKIGTF  319 (460)
T ss_pred             HHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeee--eecccccCcccc-eEEEEcHHHHHHHhcccccCccc
Confidence            999999999999999999865532       12233578886  999999643566 888888888877653211     


Q ss_pred             -hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          278 -GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       278 -~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                       +..+..|+.+...++...+..++. +...++..+..++|.+.|+++ .+  +|...             +.+|.|.++.
T Consensus       320 ~h~~T~~gnpl~~aaa~a~L~~i~~-~~l~~~v~~~g~~l~~~L~~l-~~--~~~v~-------------~vrG~Gl~~g  382 (460)
T PRK06105        320 GHGFTASGHPVAAAVALENLAIIEE-RDLVGNAAERGARLQARLRAL-AD--HPLVG-------------EVRGVGLIAA  382 (460)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHh-hc--CCCeE-------------EEEecceEEE
Confidence             112233444443333333332221 123455566667777777664 21  12110             2347899999


Q ss_pred             EEeC
Q 013079          357 LDME  360 (450)
Q Consensus       357 ~~l~  360 (450)
                      |++.
T Consensus       383 ie~~  386 (460)
T PRK06105        383 VELV  386 (460)
T ss_pred             EEEe
Confidence            9984

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.68  E-value=3.1e-15  Score=152.07  Aligned_cols=237  Identities=16%  Similarity=0.167  Sum_probs=152.2

Q ss_pred             CChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHh--------CCCc
Q 013079           97 FNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF--------FPRA  165 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~--------~~~~  165 (450)
                      .++...+|.++|+++. +.+.++||+|   |++|+..+++....  .+++||+.++.||+....+...        ....
T Consensus        88 ~~~~~~~la~~L~~~~~~~~~v~~~~s---GseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~  164 (426)
T PRK00062         88 PTELEVELAELVIELVPSIEMVRMVNS---GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPD  164 (426)
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEecC---HHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCC
Confidence            4667788999999876 4578999999   99999999987543  3578999999999975332111        0000


Q ss_pred             c-Ce------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          166 C-NI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       166 ~-g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                      . +.      ....++..|++++++.+..  +++++|+++.+...+|.+.+    +++|.++|++||+++|+||+|+++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r  244 (426)
T PRK00062        165 SPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFR  244 (426)
T ss_pred             CCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccc
Confidence            0 11      1223344588999888732  47889999988888999988    9999999999999999999996552


Q ss_pred             CC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHHH
Q 013079          233 LS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGL  304 (450)
Q Consensus       233 ~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~  304 (450)
                      ..      ......|+  .+++|.++ .|+++ |+++.++++++.+.....  ...+..++.+.+.++...+..++.- .
T Consensus       245 ~g~~~~~~~~~~~pDi--~~~gK~l~-~G~p~-ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~-~  319 (426)
T PRK00062        245 VALGGAQGYYGVTPDL--TTLGKIIG-GGLPV-GAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEP-G  319 (426)
T ss_pred             cCCccHHHHhCCCcch--HhhhhHhh-CCCcc-eeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcc-h
Confidence            21      11123565  56899999 56887 778888888887742211  1112234444444443343333221 2


Q ss_pred             HHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          305 RMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ..++..+..+++.+.|+    +++....                   .+|.|.++.+.+.
T Consensus       320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------------------vrg~G~~~~i~l~  360 (426)
T PRK00062        320 FYEELEALTKRLAEGLKEAAKKAGIPLT-------------------VNRVGSMFGLFFT  360 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCceE-------------------EEEecceEEEEEe
Confidence            33334444445555554    3443211                   1257889988875

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.68  E-value=6.3e-15  Score=160.66  Aligned_cols=293  Identities=17%  Similarity=0.202  Sum_probs=181.7

Q ss_pred             hhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc----cCCC----EEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           99 PTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC----SSGG----HVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~----~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ....++++.|++++|.+.+.+..++  |+.|+.+++.++.    ++|+    .|++++..|++....+.     ..|+++
T Consensus       542 ~~i~e~q~~l~eltG~d~~sl~~~~--ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~-----~~G~~v  614 (954)
T PRK05367        542 ELIDQLEAWLAEITGYDAVSLQPNA--GAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV-----MAGMKV  614 (954)
T ss_pred             HHHHHHHHHHHHHHCCCCEEECccH--HHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH-----HCCCEE
Confidence            4568899999999999887666541  5666645443332    4454    59999999988877664     368899


Q ss_pred             EEeCCC-----CHHHHHHhhhcC--CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CC-CC-CCccCCCC
Q 013079          171 TFVDIS-----DHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP-LV-LSPARLGA  240 (450)
Q Consensus       171 ~~v~~~-----d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~-~~-~~~~~~g~  240 (450)
                      ++++.+     |+++|++++...  ++.+|.+.+|++-.+...|+++|+++||++|+++++|.++ .. +. .+|.++|+
T Consensus       615 v~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GA  694 (954)
T PRK05367        615 VVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGA  694 (954)
T ss_pred             EEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCC
Confidence            988764     889999988322  4677888888776333478999999999999999999998 22 22 35667899


Q ss_pred             eEEEeCCCCccc------cCccceEEEEEcCHHHHHHHHHHhhhhhhc---cCCCc-h-------HHHHHH--HHccCCc
Q 013079          241 DVVVHSISKFIS------GGADIIAGAVCGPANLVNSMMDLHQGALML---LGPTM-N-------PKVAFE--LSERIPH  301 (450)
Q Consensus       241 di~~~S~sK~~g------~~g~~igG~l~~~~~~~~~l~~~~~~~~~~---~g~~~-~-------~~~a~~--~~~~~~~  301 (450)
                      |+++.|+||+++      +||  + |+++.++.+...+-....+....   .|... +       ...++.  ...+.+.
T Consensus       695 Di~~~s~HK~f~~P~G~GGPg--~-G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~G  771 (954)
T PRK05367        695 DVSHLNLHKTFCIPHGGGGPG--V-GPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEG  771 (954)
T ss_pred             CEEEecCcccCCCCcCCCCCc--e-EEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHH
Confidence            999999999964      444  4 77776654443332111000000   11111 0       111111  1123344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-eCC--HHHHHHHHHHhhccccc
Q 013079          302 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-MET--EEKANRLMNYLQNYAQF  378 (450)
Q Consensus       302 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-l~~--~~~~~~~~~~l~~~~~~  378 (450)
                      +.+..++...+++++.++|++. ..+.+++-.....             ...++.+. ++.  ...+..+.++|..   +
T Consensus       772 lr~~a~~~~~~A~Yl~~~L~~~-~~~~~~~~~~~~~-------------~e~i~~~~~~~~~~g~~~~di~krL~d---~  834 (954)
T PRK05367        772 LRQATEVAILNANYIAKRLKDH-YPVLYTGANGRVA-------------HECILDLRPLKESTGITVDDIAKRLID---Y  834 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-cCccccCCCCCcc-------------cceEEEeecccccCCCCHHHHHHHHHH---C
Confidence            5566666678889999999773 3333322111001             12245552 331  1124667777754   4


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      |..+....                        ..+ ++.+||++. ..+..++++.|.+++..+.+
T Consensus       835 G~~~~t~~------------------------~pv-~~~l~i~pt-E~~s~~elDr~~~al~~i~~  874 (954)
T PRK05367        835 GFHAPTMS------------------------FPV-AGTLMVEPT-ESESKAELDRFCDAMIAIRA  874 (954)
T ss_pred             CCeEeecC------------------------Ccc-CCEEEEEee-ecCCHHHHHHHHHHHHHHHH
Confidence            43221100                        011 478999999 87888888888888876643

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.68  E-value=4.2e-15  Score=135.61  Aligned_cols=310  Identities=15%  Similarity=0.166  Sum_probs=203.5

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      ++-++.++++-..+++. .+=.........|+.+||++.+.|+++++++   +-.||..++.+++.|.|.|+.....|.+
T Consensus        88 ~a~~~aleeyGaGlssv-rfIcGtq~iHk~LE~kiAqfh~rED~ilyps---cfdANag~feail~pedAvfSDeLNhAS  163 (417)
T KOG1359|consen   88 NAGQKALEEYGAGLSSV-RFICGTQDIHKLLESKIAQFHGREDTILYPS---CFDANAGAFEAILTPEDAVFSDELNHAS  163 (417)
T ss_pred             HHHHHHHHHhCCCccce-eEEecchHHHHHHHHHHHHHhCCCceEEecc---ccccchHHHHHhcChhhhhhccccccch
Confidence            44455555442333332 2223345567899999999999999999999   9999999999999998888887777877


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHH-HHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCC
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEM-VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL  231 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~-l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~  231 (450)
                      ...-+. +..+     ...+++.|++. +.++. +.+-++|.....-+..|.+.|+++|.+++++||.++++|+++ +.+
T Consensus       164 IIdGir-Lckr-----y~h~dv~~l~~~l~~a~-k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf  236 (417)
T KOG1359|consen  164 IIDGIR-LCKR-----YRHVDVFDLEHCLISAC-KMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGF  236 (417)
T ss_pred             hhhhhH-HHhh-----hccchhHHHHHHHHHhh-hheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeeccccee
Confidence            766653 2222     22333334432 33333 456788888888999999999999999999999999999998 333


Q ss_pred             CC----Ccc-----CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC--
Q 013079          232 VL----SPA-----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP--  300 (450)
Q Consensus       232 ~~----~~~-----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~--  300 (450)
                      .-    -..     .-.+|++..+++|.+|+..   |||..+++.+++-++.....+.  ..+++.+.....+...++  
T Consensus       237 ~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~---GGyttgp~~li~llrqr~Rpyl--FSnslppavV~~a~ka~dll  311 (417)
T KOG1359|consen  237 FGETGRGTAEEFGVMGDVDIINSTLGKALGGAS---GGYTTGPKPLISLLRQRSRPYL--FSNSLPPAVVGMAAKAYDLL  311 (417)
T ss_pred             ecCCCCChHHHhCCCCcceehhhhhhhhhcCCC---CCCccCChhHHHHHHhcCCcee--ecCCCChhhhhhhHHHHHHH
Confidence            21    111     1158999999999999664   7999999999988876554332  223322221111111111  


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079          301 -HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG  379 (450)
Q Consensus       301 -~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g  379 (450)
                       .-...+.+.+.+.+++++.+...|+.+....   ||                 +..+-+.+...+.++.+.|...+ +=
T Consensus       312 m~s~~~i~~~~a~~qrfr~~me~aGftIsg~~---hP-----------------I~pv~lGda~lA~~~ad~lLk~G-i~  370 (417)
T KOG1359|consen  312 MVSSKEIQSRQANTQRFREFMEAAGFTISGAS---HP-----------------ICPVMLGDARLASKMADELLKRG-IY  370 (417)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCceecCCC---CC-----------------ccceecccHHHHHHHHHHHHhcC-ce
Confidence             1122344556677888888877777665422   21                 56677777777777777776533 11


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      +|++|         .|-..              .....||+.++ ...++++|+++.+|+..+.+
T Consensus       371 Vigfs---------~PvVP--------------~gkariRVqiS-AaHt~edid~~i~Af~~vgr  411 (417)
T KOG1359|consen  371 VIGFS---------YPVVP--------------KGKARIRVQIS-AAHTEEDIDRLIEAFSEVGR  411 (417)
T ss_pred             EEeec---------CCcCC--------------CCceEEEEEEe-hhcCHHHHHHHHHHHHHHHH
Confidence            12322         12111              11346999999 88888888888888877643

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.68  E-value=3e-14  Score=135.96  Aligned_cols=282  Identities=19%  Similarity=0.185  Sum_probs=186.4

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCCCCCCCcc-ccCCCChhHH----HHHHHHHHHhCCCeE-EEecChHHHHHHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFI-YSRHFNPTVL----NLSRQMAALEGTEAA-YCTASDKAGMSAISSV  133 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~-y~r~~~~~~~----~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~a  133 (450)
                      .+-+|-.++.+.+ +++-..|..+|.--..+.+ ||  +...++    .+.++..+++|++.+ +=--|   |+.||.++
T Consensus        30 eLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYg--Gce~VD~vE~laierak~LFga~~anVQPhS---Gs~AN~av  104 (413)
T COG0112          30 ELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYG--GCEYVDEVEELAIERAKKLFGAEYANVQPHS---GSQANQAV  104 (413)
T ss_pred             eeeeccccCCHHHHHHHhhhhhhccccCCCCccccC--CCeeHHHHHHHHHHHHHHHhCCCccccCCCC---chHHHHHH
Confidence            4567777777664 6666666665532111111 33  233333    344556678899876 44557   89999999


Q ss_pred             HHHhccCCCEEEEeCCCchhHHHHHHHhCCCccC--eeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccc
Q 013079          134 LMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAV  205 (450)
Q Consensus       134 l~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g--~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v  205 (450)
                      +.++++|||+|+-.+..+++....-....  ..|  +++..++++      |.|++++.+...++|+|+.-...  --..
T Consensus       105 ~~All~pGDtimgm~l~~GGHltHg~~v~--~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~Sa--Y~r~  180 (413)
T COG0112         105 YLALLQPGDTIMGLDLSHGGHLTHGSPVN--FSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGSA--YSRP  180 (413)
T ss_pred             HHHHcCCCCeEecccCCCCCcccCCCCCC--ccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECccc--cccc
Confidence            99999999999999988887665431110  122  333333433      88999998867799999874322  2356


Q ss_pred             cCHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhh
Q 013079          206 ANIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQG  278 (450)
Q Consensus       206 ~~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~  278 (450)
                      .|.+++.++|++.|+++++|.++      ++...+|... +|+++.|.||.+.+|-   ||++..+. ++.+++....-.
T Consensus       181 id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-AdvVTtTTHKTlrGPr---GG~Il~~~eel~kkin~aVFP  256 (413)
T COG0112         181 IDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-ADVVTTTTHKTLRGPR---GGIILTNDEELAKKINSAVFP  256 (413)
T ss_pred             cCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-cceEeCCcccCCCCCC---ceEEEeccHHHHHHhhhhcCC
Confidence            79999999999999999999996      3334577777 9999999999998764   68887774 788887653221


Q ss_pred             hhhccCCCchHHHHHH--HHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          279 ALMLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~--~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                      . ...|+.+...++..  +...+ ..+.+..++..+|++.|++.|.+.|+++..-+..+                  .++
T Consensus       257 g-~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdn------------------Hl~  317 (413)
T COG0112         257 G-LQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDN------------------HLV  317 (413)
T ss_pred             c-cCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccc------------------eEE
Confidence            1 12233332222222  22233 33566777789999999999999999876544222                  267


Q ss_pred             EEEeC----CHHHHHHHHHHhhc
Q 013079          356 CLDME----TEEKANRLMNYLQN  374 (450)
Q Consensus       356 ~~~l~----~~~~~~~~~~~l~~  374 (450)
                      .+++.    +...++..++...+
T Consensus       318 lVDl~~~~~~Gk~ae~~L~~~~I  340 (413)
T COG0112         318 LVDLRSKGLTGKKAEAALERAGI  340 (413)
T ss_pred             EEEcccCCCCHHHHHHHHHHcCE
Confidence            77766    35556777776654

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.68  E-value=1.8e-14  Score=147.57  Aligned_cols=216  Identities=12%  Similarity=0.170  Sum_probs=135.1

Q ss_pred             CCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC-----C-
Q 013079           96 HFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP-----R-  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~-----~-  164 (450)
                      ..++...++.++|+++...   +.++|++|   |+||+..|++...  ....+||.....||+..........     + 
T Consensus        94 ~~~~~~~~la~~L~~~~p~~~~~~v~f~~s---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~  170 (451)
T PRK06918         94 MMYEPYIELAEKLAALAPGSFDKKVLFLNS---GAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKF  170 (451)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCEEEEcCC---cHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccc
Confidence            3467788899999998752   57899999   9999999998542  2235788888889886543321100     0 


Q ss_pred             ccC---eeEEEeCCCC-----------------HHHHHHhh----hcCCceEEEEecCCCCcccccC----HHHHHHHHH
Q 013079          165 ACN---ITTTFVDISD-----------------HEMVNSAI----VQGRTKVLYFESISNPTLAVAN----IPELSRLAH  216 (450)
Q Consensus       165 ~~g---~~v~~v~~~d-----------------~~~l~~ai----~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~  216 (450)
                      .++   ..+..++..+                 ++.+++.+    ..+++.+|++|.++...|.+.+    +++|.++|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~  250 (451)
T PRK06918        171 GFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICS  250 (451)
T ss_pred             cCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHH
Confidence            000   1122222110                 12333332    1256889999988877787643    889999999


Q ss_pred             hcCCEEEEeCCCCCCCCCc-----cCCC--CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH
Q 013079          217 DKGVTVVVDNTFSPLVLSP-----ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP  289 (450)
Q Consensus       217 ~~gi~livD~~~~~~~~~~-----~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~  289 (450)
                      ++|+++|+||+|+++....     ..++  .|++  |++|.++ +|+|+ |++++++++++.+..... ..+..++.+.+
T Consensus       251 ~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~--t~sK~l~-~G~pi-g~v~~~~~i~~~~~~~~~-~~T~~g~~l~~  325 (451)
T PRK06918        251 EHGILFVADEIQTGFARTGKYFAIEHFDVVPDLI--TVSKSLG-AGVPI-SGVIGRKEIMDESAPGEL-GGTYAGSPLGC  325 (451)
T ss_pred             HcCCEEEEeccccCcCccCceehhHhcCCCCCEE--eeehhhc-CCCcc-EEEEEcHHHHhccCCCCc-CcCCCcCHHHH
Confidence            9999999999996663221     1223  6755  6999999 68999 999999888877643222 22344455555


Q ss_pred             HHHHHHHccC--CcHHHHHHHHHHHHHHHHHHHHh
Q 013079          290 KVAFELSERI--PHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       290 ~~a~~~~~~~--~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      .++...+..+  ..+.++   ..+..+++.+.|++
T Consensus       326 aaa~a~l~~i~~~~~~~~---~~~~g~~l~~~l~~  357 (451)
T PRK06918        326 AAALAVLDIIEKENLNDR---AIELGKVVMNRFEE  357 (451)
T ss_pred             HHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHH
Confidence            5544444322  223333   33444555555554

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.67  E-value=1.5e-14  Score=157.82  Aligned_cols=275  Identities=18%  Similarity=0.185  Sum_probs=186.3

Q ss_pred             hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh-ccC--CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL-CSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l-~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +.+.+++..+|++.|.+  ++-++.+   +|++.++++.++ ..+  +++|++++.+|+.+...+...... .|++++.+
T Consensus       121 eal~~~Qt~la~LtG~~~anaSl~d~---aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~G~ev~~~  196 (954)
T PRK05367        121 EALLNFQTMVADLTGLEIANASLLDE---ATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEP-LGIEVVVG  196 (954)
T ss_pred             HHHHHHHHHHHHHHCCChhhcccccc---HHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHh-CCCEEEEe
Confidence            45678899999999976  4688889   898888777765 344  389999999999999888655554 79999998


Q ss_pred             CCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCc-
Q 013079          174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF-  250 (450)
Q Consensus       174 ~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~-  250 (450)
                      +.++  +    +..+++.++++.+| |.+|.+.|+++|+++||++|+++++|..+  ..+..+|.++|+|++++|.+|+ 
T Consensus       197 ~~~~--d----~~~~~~~~vlvq~p-~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vgs~qkfg  269 (954)
T PRK05367        197 DAAK--A----LDHDDVFGVLLQYP-GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVGSAQRFG  269 (954)
T ss_pred             cCcc--C----CCcccEEEEEEecC-CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEeeCcccC
Confidence            8653  1    21345666766665 67999999999999999999999999865  3344578889999999999999 


Q ss_pred             ----cccCccceEEEEEcCHHHHHHHHHHhhhh--------------------hhc-cCC----CchHHHHHHH-----H
Q 013079          251 ----ISGGADIIAGAVCGPANLVNSMMDLHQGA--------------------LML-LGP----TMNPKVAFEL-----S  296 (450)
Q Consensus       251 ----~g~~g~~igG~l~~~~~~~~~l~~~~~~~--------------------~~~-~g~----~~~~~~a~~~-----~  296 (450)
                          +|||+   +|+++.++++...+....-++                    .++ .+.    +.....+..+     .
T Consensus       270 ~P~g~GGP~---aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~  346 (954)
T PRK05367        270 VPMGFGGPH---AAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVY  346 (954)
T ss_pred             CCCCCCCCC---EEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHH
Confidence                77776   499998887765542110000                    001 111    1111111111     1


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079          297 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA  376 (450)
Q Consensus       297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~  376 (450)
                      .+..-+....++...++.++++.|++.+.++..+.                   +...+.|.++.  ...++.++|... 
T Consensus       347 ~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~-------------------~f~~~~~~~~~--~~~~i~~~l~~~-  404 (954)
T PRK05367        347 HGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDS-------------------FFDTLTVEVGG--DAAAVLARALAA-  404 (954)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCC-------------------CCCeEEEeCCC--CHHHHHHHHHHC-
Confidence            12223444445567788888999977665543322                   22367777652  255677776642 


Q ss_pred             cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                        | |-++                           -+.++.||||+. ..+++++++.|.++|.
T Consensus       405 --g-i~~~---------------------------~~~~~~l~is~~-e~~t~~did~l~~~l~  437 (954)
T PRK05367        405 --G-INLR---------------------------RVDDDHVGISLD-ETTTREDLAALLAVFG  437 (954)
T ss_pred             --C-ceec---------------------------cccCCEEEEEec-ccCCHHHHHHHHHHHc
Confidence              2 1110                           011467999999 9889999999999886

>PRK05965 hypothetical protein; Provisional

Probab=99.67  E-value=2.4e-14  Score=146.50  Aligned_cols=299  Identities=14%  Similarity=0.207  Sum_probs=182.4

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------C-CCEEEEeCCCchhHHHHHHHhC---
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTHFF---  162 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~~~---  162 (450)
                      ..++...+|.++|+++..  .+.++|++|   |+||+..|++....       + ..+||.....||+.........   
T Consensus        87 ~~~~~~~~lae~L~~~~p~~~~~v~f~~s---GSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~  163 (459)
T PRK05965         87 FGSEPAIRLAAKLAERAPGSLNHVYFTLG---GSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALP  163 (459)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCC---hhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCc
Confidence            346777889999999874  467899999   99999999985421       2 2578999999988643211110   


Q ss_pred             --CCccCe---eEEEeCC---------CC--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHHHH
Q 013079          163 --PRACNI---TTTFVDI---------SD--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSR  213 (450)
Q Consensus       163 --~~~~g~---~v~~v~~---------~d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I~~  213 (450)
                        ...++.   .+..++.         +|        ++++++.+..   +++.+|++|.++...|.+.+    +++|.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~  243 (459)
T PRK05965        164 AFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMRE  243 (459)
T ss_pred             hhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHH
Confidence              000110   1122221         12        2567776631   56889999999988888754    889999


Q ss_pred             HHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh------hhhh
Q 013079          214 LAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------QGAL  280 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~~~~  280 (450)
                      +|++||+++|+||+++++..       .-....+|+++  ++|.+++.-.++ |.++.++++.+.+....      .+..
T Consensus       244 lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~h~~  320 (459)
T PRK05965        244 ACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMT--VAKGLTSGYVPM-GAVLMSDHVYQGIADGAGAAAPVGHGY  320 (459)
T ss_pred             HHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEE--echhhccCCcce-eEEEEcHHHHHHHhccccccccccccC
Confidence            99999999999999966631       11233578888  899999532478 77788888887764210      1122


Q ss_pred             hccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          281 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       281 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +..|+.++..++...+..++. +...++..+..++|.+.|+++. +  +|...             +.+|.|.++.+++.
T Consensus       321 T~~gnpl~~Aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~l~~l~-~--~~~v~-------------~vrG~Gl~~gie~~  383 (459)
T PRK05965        321 TYSAHPVSAAVGLEVLRLYHE-GGLLANGQKAGPRFAAGLDALR-A--HPLVG-------------DVRGRGLLGALELV  383 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhc-c--CCCEE-------------EEeecceEEEEEEe
Confidence            334444444444333322211 1123444566667777776542 1  22111             33478999999985


Q ss_pred             CH-----------HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CC
Q 013079          361 TE-----------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LG  426 (450)
Q Consensus       361 ~~-----------~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~  426 (450)
                      ..           ..+..+...+..   .|++....|                            ...||+...+   .+
T Consensus       384 ~~~~~~~~~~~~~~~~~~i~~~~~~---~Gll~~~~g----------------------------~~~i~~~PpL~it~~  432 (459)
T PRK05965        384 ADKATKTPFDAALDPADRIFDRAYA---NGLVFRAFG----------------------------DGVLGFAPALCCTEG  432 (459)
T ss_pred             ccccccCCCCchhHHHHHHHHHHHh---CCeEEEecC----------------------------CcEEEEECCCcCCHH
Confidence            21           123445555543   232211111                            3568887331   57


Q ss_pred             CHHHHHHHHHHHHHHhhhcCCC
Q 013079          427 TLDQRWSQFEKALSRMQDSGVF  448 (450)
Q Consensus       427 ~~~~~i~~l~~al~~~~~~~~~  448 (450)
                      ++++.++.|.++|.++.+.|+.
T Consensus       433 ei~~~~~~l~~~l~~~~~~~~~  454 (459)
T PRK05965        433 EFDLIFERTRKTLDDVLADPDV  454 (459)
T ss_pred             HHHHHHHHHHHHHHHHhcCcch
Confidence            7788888888888888766653

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.67  E-value=1.6e-14  Score=132.33  Aligned_cols=297  Identities=16%  Similarity=0.190  Sum_probs=179.2

Q ss_pred             ChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhcc---CCC--EEEE-eCCCchhHHHHHH--HhCCCc
Q 013079           98 NPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCS---SGG--HVVA-ARTLYGGTHALLT--HFFPRA  165 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~---~gd--~Vi~-~~~~y~~~~~~~~--~~~~~~  165 (450)
                      .+.++.+.+.+.+-+|    ++++.+|+|   .+.+...++..+..   .|+  +|+. -.|+|-+|....-  +.+.. 
T Consensus        77 ~~li~ala~~l~~~ygwnit~~NIalTnG---SQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs-  152 (417)
T COG3977          77 AVLIDALAKMLRREYGWNITAQNIALTNG---SQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVS-  152 (417)
T ss_pred             hHHHHHHHHHHHHHhCCCCccceeeecCC---ccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceee-
Confidence            4556666666666666    357899999   88888887765532   243  4554 5688888765431  00000 


Q ss_pred             cCeeEEEeC------CCCHHHHHHhhhcCCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCC-CCCC---
Q 013079          166 CNITTTFVD------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTF-SPLV---  232 (450)
Q Consensus       166 ~g~~v~~v~------~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~-~~~~---  232 (450)
                      ..-++..++      ..|.++|.  + .+++.+|++.-|.||||.+.   .+.+|.++|++||++++.|++| -+|+   
T Consensus       153 ~kP~iel~~~g~FKY~vDF~~l~--i-~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~ii  229 (417)
T COG3977         153 AKPNIELLPAGQFKYHVDFEHLH--I-GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGII  229 (417)
T ss_pred             ccCCcccccccceeeccCHHHcc--c-ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCcee
Confidence            000111111      11667665  3 67899999999999999994   5889999999999999999999 4443   


Q ss_pred             CC---ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCc--HHH-HH
Q 013079          233 LS---PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH--LGL-RM  306 (450)
Q Consensus       233 ~~---~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~--l~~-~~  306 (450)
                      ++   +.--.+.+.+.|+||. |.||.|+ |.+++++++++.+..+.. ......+.+.+..+..+....+-  +.+ .+
T Consensus       230 fsd~~~~w~~NiilC~SLSK~-GLPG~R~-GIiIane~viqaitnmn~-iisLap~~~G~Aia~~mie~gdl~rlseqVI  306 (417)
T COG3977         230 FSDATPLWNENIILCMSLSKL-GLPGSRC-GIIIANEKVIQAITNMNG-IISLAPGRMGPAIAAEMIESGDLLRLSEQVI  306 (417)
T ss_pred             cccccccCCCCEEEEeehhhc-CCCCcce-eEEEccHHHHHHHHhccc-eeeecCCCccHHHHHHHhhcchHHHHHHHhh
Confidence            22   2222578999999995 6699998 999999999998876644 22234445566666555443322  222 22


Q ss_pred             HH-HHHHHHHHHHHHHhC-CC---eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccc
Q 013079          307 KE-HCHRALIFARRMKKL-GL---KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGF  380 (450)
Q Consensus       307 ~~-~~~~~~~l~~~L~~~-~~---~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~  380 (450)
                      +- |+.+.+...+.|++. +.   .+..|.                   ..-++|++|++ +-..+.+..+|+..+    
T Consensus       307 rPFY~~~~q~~~~~l~~~lp~~~~~iHkpE-------------------GAIFlWLWf~dLPItt~~LYq~LKa~G----  363 (417)
T COG3977         307 RPFYRNRVQTTIAILRRYLPEYRCLIHKPE-------------------GAIFLWLWFKDLPITTEELYQRLKARG----  363 (417)
T ss_pred             hHHHHHHHHHHHHHHHHhcCccceeeecCC-------------------cceeehhhhccCCCCHHHHHHHHHhCe----
Confidence            22 455556566666542 32   333332                   12256777662 112456788887632    


Q ss_pred             cccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079          381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       381 i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~  442 (450)
                      +-+-          |++...-.++.    .....+.++|+|.- .  +.++.-+..|.+.++++
T Consensus       364 vl~V----------PG~~FFpGl~~----ewpH~hqC~Rmn~~-~~~~~ie~Gva~lae~ve~~  412 (417)
T COG3977         364 VLMV----------PGHYFFPGLDK----EWPHTHQCMRMNYV-PEPEKIEKGVAILAEEVERA  412 (417)
T ss_pred             EEEe----------cccccCCCCCC----CCCCccceEEEecC-CCHHHHHHHHHHHHHHHHHH
Confidence            2222          33333222221    13334689999987 4  33444456666666554

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.67  E-value=1.5e-14  Score=146.52  Aligned_cols=265  Identities=17%  Similarity=0.151  Sum_probs=171.4

Q ss_pred             ccccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCC-Ce--EEEecChHHHHHHHHHHHHHh
Q 013079           62 IEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT-EA--AYCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        62 i~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~-~~--~~~tsg~~~gt~ai~~al~~l  137 (450)
                      .....|.+.+.+ +.+...+....+.+   ..| ..+...-+++-..++++++. +.  -+||+|   ||+||.+++.+.
T Consensus        67 ~~~~~~~~~~~a~~~~~~~~~~nl~d~---~~~-p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~G---gTean~lal~aa  139 (460)
T COG0076          67 AGFCPTRVPPVAAELLVSALNKNLGDP---DES-PAAAELEERVVNMLSDLLGAPEEASGTFTSG---GTEANLLALLAA  139 (460)
T ss_pred             EccCCCCCHHHHHHHHHHHHhhcCCCc---ccC-hhHHHHHHHHHHHHHHHhCCCCCCceEEEcC---hHHHHHHHHHHH
Confidence            333444444433 55555555544332   112 12233345556667777776 33  499999   999999988764


Q ss_pred             cc-----C---C------CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceE--EEE
Q 013079          138 CS-----S---G------GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKV--LYF  195 (450)
Q Consensus       138 ~~-----~---g------d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~l--v~i  195 (450)
                      ..     .   +      .+|+++...|.+....+.     .+|++...++.+      |+++|++++ ++++..  |+.
T Consensus       140 r~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~-----~lG~~~~~v~~~~~~~~id~~~l~~~i-~~~t~~g~vV~  213 (460)
T COG0076         140 RERWRKRALAESGKPGGKPNIVCSETAHFSFEKAAR-----YLGLGLRRVPTVPTDYRIDVDALEEAI-DENTIGGVVVG  213 (460)
T ss_pred             HHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHH-----HhCCCceeEEeccCccccCHHHHHHHH-HhhccCceEEE
Confidence            21     1   1      169999999999988875     345555444332      899999999 777766  777


Q ss_pred             ecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC---c-----cCC-CCeEEEeCCCCccccCccceEEEE-EcC
Q 013079          196 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS---P-----ARL-GADVVVHSISKFISGGADIIAGAV-CGP  265 (450)
Q Consensus       196 ~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~---~-----~~~-g~di~~~S~sK~~g~~g~~igG~l-~~~  265 (450)
                      ...+.++|.+.|+++|+++|+++++++|||++++++...   +     ..+ ++|-++.++||++..|-. . |++ +.+
T Consensus       214 ~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~-~-G~il~rd  291 (460)
T COG0076         214 TAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIG-C-GVVLFRD  291 (460)
T ss_pred             EecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCC-c-eEEEEEC
Confidence            888999999999999999999999999999999665421   1     111 689999999999875433 4 555 556


Q ss_pred             HHHHHHHHHHhhhhh--------hccCCCc--hHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeC-CC
Q 013079          266 ANLVNSMMDLHQGAL--------MLLGPTM--NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLY-PG  331 (450)
Q Consensus       266 ~~~~~~l~~~~~~~~--------~~~g~~~--~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~-p~  331 (450)
                      ++...+.......+.        ...+.-+  ....++..++  +.+.+.+..++..++++++.+.|++.+ +++.. |.
T Consensus       292 ~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~  371 (460)
T COG0076         292 EEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPE  371 (460)
T ss_pred             HHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCc
Confidence            633333322211110        0111111  2233344333  346677778888999999999999987 45443 33


Q ss_pred             CCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          332 LEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       332 ~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                                          .++++|++++
T Consensus       372 --------------------l~~V~fr~~~  381 (460)
T COG0076         372 --------------------LPIVAFRLKD  381 (460)
T ss_pred             --------------------cceEEEEcCC
Confidence                                3389999864

>PRK12403 putative aminotransferase; Provisional

Probab=99.67  E-value=2.3e-14  Score=146.67  Aligned_cols=242  Identities=14%  Similarity=0.140  Sum_probs=144.0

Q ss_pred             CChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc-------cCCC-EEEEeCCCchhHHHHHHHhCC---
Q 013079           97 FNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC-------SSGG-HVVAARTLYGGTHALLTHFFP---  163 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~-------~~gd-~Vi~~~~~y~~~~~~~~~~~~---  163 (450)
                      .++...++.++|+++.+  .+.++|++|   |++|+..|++...       ++++ .|+.....||+..........   
T Consensus        96 ~~~~~~~lae~L~~~~p~~~~~v~f~~S---GseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~  172 (460)
T PRK12403         96 THPAVIELSELLFSLLPGHYSHAIYTNS---GSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKF  172 (460)
T ss_pred             CCHHHHHHHHHHHHhCCCCcCEEEEeCC---cHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCcc
Confidence            46778899999999986  468999999   9999999998653       1223 355556677775322111000   


Q ss_pred             -CccC---eeEEEeCCC-----------------CHHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHHHHHH
Q 013079          164 -RACN---ITTTFVDIS-----------------DHEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLA  215 (450)
Q Consensus       164 -~~~g---~~v~~v~~~-----------------d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I~~la  215 (450)
                       +..+   ..+..++..                 +++++++.+.+   +++.+|++|.+....|.+.+    +++|.++|
T Consensus       173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc  252 (460)
T PRK12403        173 MHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRIC  252 (460)
T ss_pred             ccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHH
Confidence             0000   012223211                 12456555522   46789999999988898877    99999999


Q ss_pred             HhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh---hhhhccCC
Q 013079          216 HDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ---GALMLLGP  285 (450)
Q Consensus       216 ~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~---~~~~~~g~  285 (450)
                      ++||+++|+||+++++..       .-..+..|+++  ++|.+++.-.++ |.+++++++.+.+.....   +..+..|+
T Consensus       253 ~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gK~lggG~~Pi-ga~v~~~~i~~~~~~~~~~~~~~~T~~gn  329 (460)
T PRK12403        253 RQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLS--IAKGLTSGYVPM-GGLVLSKRIAEALVEQGGVFAHGLTYSGH  329 (460)
T ss_pred             HHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEE--Ecccccccccce-EEEEECHHHHHHHhcCCCccccCCCCCCC
Confidence            999999999999966531       22223478887  999999532377 666677788776642111   11122333


Q ss_pred             CchHHHHHHHHccCCcHHHHHHHHH-HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          286 TMNPKVAFELSERIPHLGLRMKEHC-HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       286 ~~~~~~a~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      .+...++.+.++.++.. ...++.. ++.++|.+.|++...+....+               +.+|.|.++.+++.
T Consensus       330 Pl~~Aaala~L~~i~~~-~l~~~~~~~~g~~l~~~L~~l~~~~~~i~---------------~vrG~Gl~~gie~~  389 (460)
T PRK12403        330 PVAAAVAIANLKALRDE-GVVTRVKDDTGPYLQRCLREVFGDHPLVG---------------EVQGAGLVAALQFA  389 (460)
T ss_pred             HHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHhcCCCEE---------------eEeecceEEEEEEc
Confidence            33333333333322211 1233443 455666666654311110011               33478999999985

>PRK06541 hypothetical protein; Provisional

Probab=99.66  E-value=3.5e-14  Score=145.18  Aligned_cols=239  Identities=16%  Similarity=0.181  Sum_probs=151.3

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc----C----CCEEEEeCCCchhHHHHHHHh----
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS----S----GGHVVAARTLYGGTHALLTHF----  161 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~----~----gd~Vi~~~~~y~~~~~~~~~~----  161 (450)
                      +.++...++.++|+++..  .+.++|++|   |+||+..|++....    .    ..+|+.....||+........    
T Consensus        92 ~~~~~~~~la~~l~~~~p~~~~~v~f~~s---GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~  168 (460)
T PRK06541         92 YAHPPAIELAERLAALAPGDLNRVFFTTG---GSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLP  168 (460)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEcCC---cHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCCh
Confidence            456778889999999864  367899999   99999999985421    1    357898888888865432111    


Q ss_pred             ------CCCccCeeEEEeCC----------CC--------HHHHHHhhh---cCCceEEEEecCCCCcccccC----HHH
Q 013079          162 ------FPRACNITTTFVDI----------SD--------HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPE  210 (450)
Q Consensus       162 ------~~~~~g~~v~~v~~----------~d--------~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~  210 (450)
                            .+...|  +..++.          ++        ++.+++.+.   ..++.+|+++.++++.|.+.+    +++
T Consensus       169 ~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~  246 (460)
T PRK06541        169 AFKAPFEPLVPG--GFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFER  246 (460)
T ss_pred             hhccccCCCCCC--cEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHH
Confidence                  110012  222221          12        356777763   245788999999999999987    999


Q ss_pred             HHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCcc-ceEEEEEcCHHHHHHHHHHhh---hh
Q 013079          211 LSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQ---GA  279 (450)
Q Consensus       211 I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~-~igG~l~~~~~~~~~l~~~~~---~~  279 (450)
                      |.++|+++|+++|+||+++++..       ....+..|+++  ++|.++ .|+ ++ |+++.++++++.+.....   +.
T Consensus       247 l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt--~gK~l~-~G~~pi-gav~~~~~i~~~~~~~~~~~~~~  322 (460)
T PRK06541        247 VREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIIT--CAKGIT-SGYSPL-GAMIASDRLFEPFLDGPTMFLHG  322 (460)
T ss_pred             HHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEE--eccccc-CCccce-eEEEEcHHHHHHhhcCCCccccC
Confidence            99999999999999999965531       11223478876  999999 465 77 778888888877643211   01


Q ss_pred             hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       280 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                      .+..++.+...++...+..++. +...++..++.++|.+.|+++..   +|...             +.+|.|.++.++|
T Consensus       323 ~T~~gnp~~~aaala~l~~l~~-~~~~~~~~~~g~~l~~~L~~l~~---~~~v~-------------~vrg~Gl~~~ie~  385 (460)
T PRK06541        323 YTFGGHPVSAAVALANLDIFER-EGLLDHVRDNEPAFRATLEKLLD---LPIVG-------------DVRGDGYFYGIEL  385 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHhhc---CCCeE-------------EEEecceEEEEEE
Confidence            1122333332233222222211 12345667777888888876521   11100             2236888999998


Q ss_pred             C
Q 013079          360 E  360 (450)
Q Consensus       360 ~  360 (450)
                      .
T Consensus       386 ~  386 (460)
T PRK06541        386 V  386 (460)
T ss_pred             e
Confidence            4

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.66  E-value=2.8e-14  Score=145.79  Aligned_cols=297  Identities=15%  Similarity=0.177  Sum_probs=174.1

Q ss_pred             CCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHH-HHHHhC----CCc
Q 013079           95 RHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHA-LLTHFF----PRA  165 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~-~~~~~~----~~~  165 (450)
                      +..++...+|.++|+++.+.  +.++|++|   |+||+.+|++...  ....+|++....||+... .+....    ...
T Consensus       109 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~s---GseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~  185 (459)
T PRK06082        109 RFTNETAIECAEKLTEIAGGELNRVLFAPG---GTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQG  185 (459)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEECCC---cHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccC
Confidence            45678889999999999853  57899999   9999999997542  223678888888887542 221000    000


Q ss_pred             cC---eeEEEeCC--------CC--------HHHHHHhhhc-CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEE
Q 013079          166 CN---ITTTFVDI--------SD--------HEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTV  222 (450)
Q Consensus       166 ~g---~~v~~v~~--------~d--------~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~l  222 (450)
                      ++   ..+..++.        .+        ++.+++.+.. +++.+|++|.+++..+.+.|   +++|.++|++||+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~ll  265 (459)
T PRK06082        186 MGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLL  265 (459)
T ss_pred             CCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            00   01222221        11        3457777632 46789999999887444455   899999999999999


Q ss_pred             EEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHH
Q 013079          223 VVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL  295 (450)
Q Consensus       223 ivD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~  295 (450)
                      |+||+++++..       ......+|+++  ++|.+++...++ |.++.++++.........+ .+..|+.++..++...
T Consensus       266 I~DEV~tG~GRtG~~fa~e~~gv~PDiv~--~gKgl~gG~~P~-~av~~~~~i~~~~~~~~~~-~T~~gnpl~~aaa~a~  341 (459)
T PRK06082        266 IIDEIPNGMGRTGEWFTHQAYGIEPDILC--IGKGLGGGLVPI-AAMITKDKYNTAAQISLGH-YTHEKSPLGCAAALAT  341 (459)
T ss_pred             EEechhhCCCccchhhHhHhhCCCCCEEE--ecccccCCCCcc-eEEEEcHHHHhhccCCCCC-CCCCcCHHHHHHHHHH
Confidence            99999865532       11223578887  899999643577 7777776665432111111 1234444443333333


Q ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-H-------HHHHH
Q 013079          296 SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-E-------EKANR  367 (450)
Q Consensus       296 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~-------~~~~~  367 (450)
                      +..++. +...++..++.++|.+.|+++..+...+.               +.+|.|.++.+++.. .       +.+..
T Consensus       342 L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~---------------~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~  405 (459)
T PRK06082        342 IEVIEQ-EGLLEKVKADSQFMRERLLEMKAKYPLIG---------------DVRGIGLLWGVELVTDRHTKERAYDEAEA  405 (459)
T ss_pred             HHHHHh-cCHHHHHHHHHHHHHHHHHHHHhhCCCee---------------eeeeccceeEEEEccCccccCccHHHHHH
Confidence            332221 12344556666677777765321110111               334789999999852 1       12334


Q ss_pred             HHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CCCHHHHHHHHHHHHHHhhh
Q 013079          368 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       368 ~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~~~~~~i~~l~~al~~~~~  444 (450)
                      ++..+..   .|++. .          + +                ..+.|||+..+   .+++++.++.|.++|.++.+
T Consensus       406 ~~~~~~~---~Gvl~-~----------~-~----------------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~  454 (459)
T PRK06082        406 VLYRCLN---NGLSF-K----------V-S----------------QGNVIQLSPPLIITREELTQALAILEEAIAKICQ  454 (459)
T ss_pred             HHHHHHh---CCCEE-E----------e-c----------------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence            4444432   23211 1          0 0                13568888651   36677777777777777644


Q ss_pred             c
Q 013079          445 S  445 (450)
Q Consensus       445 ~  445 (450)
                      .
T Consensus       455 ~  455 (459)
T PRK06082        455 D  455 (459)
T ss_pred             h
Confidence            3

>PRK07678 aminotransferase; Validated

Probab=99.66  E-value=4e-14  Score=144.62  Aligned_cols=255  Identities=11%  Similarity=0.105  Sum_probs=155.8

Q ss_pred             CCChhHHHHHHHHHHHhCC-CeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHh-----
Q 013079           96 HFNPTVLNLSRQMAALEGT-EAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHF-----  161 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~-~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~-----  161 (450)
                      ..++...++.++|+++.+. +.++|++|   |+||+..|++....       +| .+||.....||+........     
T Consensus        86 ~~~~~~~~lae~l~~~~~~~~~v~f~~s---GseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~  162 (451)
T PRK07678         86 QSHEPAIKLAEKLNEWLGGEYVIFFSNS---GSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQ  162 (451)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcc
Confidence            4567778899999998754 46899999   99999999985421       23 57898888898865332111     


Q ss_pred             -----CCCccCeeEEEeCCC--------------C---HHHHHHhhh---cCCceEEEEecCCCCcccccC----HHHHH
Q 013079          162 -----FPRACNITTTFVDIS--------------D---HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELS  212 (450)
Q Consensus       162 -----~~~~~g~~v~~v~~~--------------d---~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~I~  212 (450)
                           .+...|  +.+++..              |   ++.+++.+.   .+++.+|++|.++...|.+.+    +++|.
T Consensus       163 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr  240 (451)
T PRK07678        163 RKYKYEPLAPG--FLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVK  240 (451)
T ss_pred             cccccCCCCCC--CEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHH
Confidence                 110012  2222211              1   223555562   257899999999888888865    89999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-----hhhh
Q 013079          213 RLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-----QGAL  280 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-----~~~~  280 (450)
                      ++|++||+++|+||+++++..       .-..+.+|+++  ++|.+++...++ |.+++++++++.+....     .+..
T Consensus       241 ~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt--~gK~lggG~~Pi-~av~~~~~i~~~~~~~~~~~~~~h~~  317 (451)
T PRK07678        241 EICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIIT--MAKGITSAYLPL-SATAVKKEIYEAFKGKGEYEHFRHVN  317 (451)
T ss_pred             HHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEE--eecccccCCcce-eEEEEcHHHHHHHhccCcccccccCC
Confidence            999999999999999966632       11233578887  899999644678 88888888887764311     1122


Q ss_pred             hccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          281 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       281 ~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +..|+.+...++...+..++. +...++..++.++|.+.|++.-.+...+.               +.+|.|.++.+++.
T Consensus       318 T~~gnp~~~aaa~a~l~~l~~-~~~~~~~~~~g~~l~~~l~~~~~~~~~v~---------------~vrg~Gl~~~i~~~  381 (451)
T PRK07678        318 TFGGNPAACALALKNLEIMEN-ENLIERSAQLGELLLEQLKEELGEHPLVG---------------DIRGKGLLVGIELV  381 (451)
T ss_pred             CCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCEE---------------EEEeeceEEEEEEe
Confidence            344444444444443332221 11233444555566666643210100011               22378889999984


Q ss_pred             C---------HHHHHHHHHHhhc
Q 013079          361 T---------EEKANRLMNYLQN  374 (450)
Q Consensus       361 ~---------~~~~~~~~~~l~~  374 (450)
                      .         ...+..+...+..
T Consensus       382 ~~~~~~~~~~~~~a~~i~~~l~~  404 (451)
T PRK07678        382 NDKETKEPADNDKVASVVAACKE  404 (451)
T ss_pred             cCCcccCcCchHHHHHHHHHHHH
Confidence            1         1234556666654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.66  E-value=3.1e-14  Score=154.67  Aligned_cols=276  Identities=19%  Similarity=0.154  Sum_probs=182.0

Q ss_pred             hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh-ccCC--CEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL-CSSG--GHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l-~~~g--d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +.+.+++..||++.|.+  ++-++.+   +|++.++++.++ +.+|  ++|++++.+|+.+...+.....+ .|++++.+
T Consensus       148 qal~~~Qt~ia~LtG~~~anaSL~d~---aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~-~GieV~~v  223 (993)
T PLN02414        148 ESLLNYQTMITDLTGLPMSNASLLDE---GTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADG-LGLEVVVA  223 (993)
T ss_pred             HHHHHHHHHHHHHhCCChhhEeecCC---hHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhh-cCCEEEEe
Confidence            34678999999999975  4789999   999999887765 3434  78999999999999988766555 79999998


Q ss_pred             CCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCC-CccCCCCeEEEeCCCCc
Q 013079          174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVL-SPARLGADVVVHSISKF  250 (450)
Q Consensus       174 ~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~-~~~~~g~di~~~S~sK~  250 (450)
                      +.++.+    .. .+.+..+++.+| |.+|.+.|+++|+++||++|+++++ .++  +-... +|.++|+|+++++.+||
T Consensus       224 ~~~~~~----~~-~~~v~~vlvq~P-~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKw  296 (993)
T PLN02414        224 DEKDFD----YS-SGDVCGVLVQYP-ATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRF  296 (993)
T ss_pred             cchhhc----cc-cCceEEEEEecC-CCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCcc
Confidence            764322    22 334545555444 4599999999999999999999999 444  32333 57788999999999999


Q ss_pred             c-----ccCccceEEEEEcCHHHHHHHHH----H----------------hhhhhhc-cCCCch----HHHHHH-----H
Q 013079          251 I-----SGGADIIAGAVCGPANLVNSMMD----L----------------HQGALML-LGPTMN----PKVAFE-----L  295 (450)
Q Consensus       251 ~-----g~~g~~igG~l~~~~~~~~~l~~----~----------------~~~~~~~-~g~~~~----~~~a~~-----~  295 (450)
                      .     |||.   +|+++.++++...+-.    +                +.+..++ .+....    ...+.+     .
T Consensus       297 g~P~G~GGP~---aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~  373 (993)
T PLN02414        297 GVPMGYGGPH---AAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAV  373 (993)
T ss_pred             ccCCCCCCCC---eeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHH
Confidence            8     4443   4999888776543311    0                0000000 111111    111111     1


Q ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc
Q 013079          296 SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY  375 (450)
Q Consensus       296 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~  375 (450)
                      ..+..-+.+..++..+++.++.+.|++.|.++..+.                   +-..+.|.++..   .++.++|...
T Consensus       374 ~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~-------------------~f~~vt~~~~~~---~~v~~~L~~~  431 (993)
T PLN02414        374 YHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLP-------------------FFDTVKVKCSDA---DAIADAAAKV  431 (993)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCC-------------------CcCeEEEecCCH---HHHHHHHHHC
Confidence            111233444445667788889999987765543321                   223788887632   4566666542


Q ss_pred             ccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          376 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       376 ~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      +    |  .++                         .+.++.||+|+. ..+++++|+.|.++|...
T Consensus       432 g----I--~l~-------------------------~~~~~~lrvs~~-e~~T~edId~L~~~l~~~  466 (993)
T PLN02414        432 G----I--NLR-------------------------VVDANTVTVSFD-ETTTLEDVDKLFKVFAGG  466 (993)
T ss_pred             C----C--eeE-------------------------EecCCeEEEEee-ccCCHHHHHHHHHHHccc
Confidence            2    2  111                         011356999999 999999999999999744

>PLN02590 probable tyrosine decarboxylase

Probab=99.66  E-value=1.5e-13  Score=141.47  Aligned_cols=219  Identities=13%  Similarity=0.123  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHhCCCe---------EEEecChHHHHHHHHHHHHHhcc----C-C-----C-EEEEeCCCchhHHHHHHHh
Q 013079          102 LNLSRQMAALEGTEA---------AYCTASDKAGMSAISSVLMQLCS----S-G-----G-HVVAARTLYGGTHALLTHF  161 (450)
Q Consensus       102 ~~l~~~iA~l~g~~~---------~~~tsg~~~gt~ai~~al~~l~~----~-g-----d-~Vi~~~~~y~~~~~~~~~~  161 (450)
                      +.+-+.+++++|.+.         -+||+|   ||+|+..++.+...    . |     + .|.+++..|.++...+.  
T Consensus       173 ~~vi~wl~~l~glp~~~~~~~~~gG~~~sG---gSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~--  247 (539)
T PLN02590        173 IIVLDWLAKLLQLPDHFLSTGNGGGVIQGT---GCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACL--  247 (539)
T ss_pred             HHHHHHHHHHhCCCcccccCCCCceEEcCc---hHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHH--
Confidence            445556777777542         589999   99999888765321    0 1     2 45567888998888775  


Q ss_pred             CCCccCe---eEEEeCCC-------CHHHHHHhhhcC-----CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeC
Q 013079          162 FPRACNI---TTTFVDIS-------DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN  226 (450)
Q Consensus       162 ~~~~~g~---~v~~v~~~-------d~~~l~~ai~~~-----~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~  226 (450)
                         ++|+   .++.|+.+       |+++|+++|...     .+-+|+.+..+-.+|.+.|+++|+++|+++|+++|||+
T Consensus       248 ---ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDa  324 (539)
T PLN02590        248 ---IGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDA  324 (539)
T ss_pred             ---HcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEec
Confidence               2343   34444432       899999998321     24466666778889999999999999999999999999


Q ss_pred             CCCCCC-CCcc----CC---CCeEEEeCCCCccccCccceEEEE-EcCHH-HHHHHHH---Hhh-h------------hh
Q 013079          227 TFSPLV-LSPA----RL---GADVVVHSISKFISGGADIIAGAV-CGPAN-LVNSMMD---LHQ-G------------AL  280 (450)
Q Consensus       227 ~~~~~~-~~~~----~~---g~di~~~S~sK~~g~~g~~igG~l-~~~~~-~~~~l~~---~~~-~------------~~  280 (450)
                      +|++.. ..+.    ..   .+|-++.+.||++..|-. . |++ +.++. +.+.+..   +.. .            +.
T Consensus       325 A~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~-c-g~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~  402 (539)
T PLN02590        325 AYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQT-C-SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQ  402 (539)
T ss_pred             chhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcC-E-EEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccC
Confidence            995543 2221    11   479999999999986654 3 555 44443 3332211   110 0            00


Q ss_pred             hccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCC
Q 013079          281 MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYP  330 (450)
Q Consensus       281 ~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p  330 (450)
                      ...+-.......|..++  +.+.+.+++++..++++++.+.|++.+. ++..|
T Consensus       403 i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~  455 (539)
T PLN02590        403 ISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT  455 (539)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence            01111123344444444  4456788889999999999999988764 55443

>PRK07481 hypothetical protein; Provisional

Probab=99.65  E-value=1e-13  Score=141.59  Aligned_cols=241  Identities=15%  Similarity=0.188  Sum_probs=149.8

Q ss_pred             CCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHH----
Q 013079           96 HFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTH----  160 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~----  160 (450)
                      ..++...++.++|+++.+   .+.++|++|   |+||+..|++....       +| .+|+.....||+.......    
T Consensus        83 ~~~~~~~~lae~L~~~~~~~~~~~v~f~~s---GsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~  159 (449)
T PRK07481         83 TTHPRAIELSYELIDMFAPEGMRRVFFSSG---GSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGN  159 (449)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCCEEEEcCc---hHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCC
Confidence            457888889999999873   467899999   99999999985421       23 5799999999885432111    


Q ss_pred             ------hCCCccCeeEEEeCC----------CCHHH--------HHHhhh---cCCceEEEEecCCCCcccccC----HH
Q 013079          161 ------FFPRACNITTTFVDI----------SDHEM--------VNSAIV---QGRTKVLYFESISNPTLAVAN----IP  209 (450)
Q Consensus       161 ------~~~~~~g~~v~~v~~----------~d~~~--------l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~  209 (450)
                            +.+...|  +..++.          .|++.        +++.+.   .+++.+|++|.++...|.+.+    ++
T Consensus       160 ~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~  237 (449)
T PRK07481        160 TVFRRNYEPLLPG--CFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWP  237 (449)
T ss_pred             cccccccCCCCCC--CEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHH
Confidence                  0111012  222211          13333        334341   256899999999988888765    89


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh------
Q 013079          210 ELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------  276 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------  276 (450)
                      +|.++|+++|+++|.||+++++..       ......+|+++  ++|.+++.-.++ |.+++++++.+.+....      
T Consensus       238 ~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~  314 (449)
T PRK07481        238 LVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMC--LAKGITSGYVPL-GATMVNARIADAFEANADFGGAI  314 (449)
T ss_pred             HHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEE--EeecccCCCcCc-eEEEEcHHHHHHHhccCcccccc
Confidence            999999999999999999866532       22233578888  899998532477 77888888887764311      


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                      .+..+..|+.+...++...+..++. ....++..+..++|.+.|+++..+.....               +.+|.|.++.
T Consensus       315 ~h~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~---------------~vrG~Glm~g  378 (449)
T PRK07481        315 MHGYTYSGHPVACAAALATLDIVVR-EDLPANAAKRGAYLLEGLQPLKERFELVG---------------DVRGKGLMLA  378 (449)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhhcCCCeE---------------EEeecceEEE
Confidence            1122334444444444333332221 12334455556667667665321110111               2347889999


Q ss_pred             EEeC
Q 013079          357 LDME  360 (450)
Q Consensus       357 ~~l~  360 (450)
                      +++.
T Consensus       379 i~l~  382 (449)
T PRK07481        379 LDLV  382 (449)
T ss_pred             EEec
Confidence            9984

>PRK06062 hypothetical protein; Provisional

Probab=99.65  E-value=4.2e-14  Score=144.34  Aligned_cols=244  Identities=14%  Similarity=0.197  Sum_probs=148.1

Q ss_pred             CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC--------
Q 013079           95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF--------  162 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~--------  162 (450)
                      ...++...++.++|+++..  .+.++|++|   |+||+..|++...  ....+||.....||+.........        
T Consensus        91 ~~~~~~~~~lae~L~~~~p~~~~~v~f~~S---GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~  167 (451)
T PRK06062         91 AHANDARSEAARLIAERAPGDLSKVFFTNG---GADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPN  167 (451)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEcCC---hHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccC
Confidence            4567788899999999874  468999999   9999999998542  223578888888888653321110        


Q ss_pred             -CCccCeeEEEeCC---------CC-------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHHHHHHHhc
Q 013079          163 -PRACNITTTFVDI---------SD-------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDK  218 (450)
Q Consensus       163 -~~~~g~~v~~v~~---------~d-------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~  218 (450)
                       +...|+.....+.         .|       ++++++.+..   +++.+|++|.+....|.+.|    +++|.++|+++
T Consensus       168 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~  247 (451)
T PRK06062        168 DTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH  247 (451)
T ss_pred             CCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc
Confidence             0001211111110         12       5667777731   46789999999988898887    99999999999


Q ss_pred             CCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-hhhhhccCCCchHH
Q 013079          219 GVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALMLLGPTMNPK  290 (450)
Q Consensus       219 gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~~~g~~~~~~  290 (450)
                      |+++|+||+++++..       ....+.+|+++  ++|.+++.-.++ |.++.++++++.+.... .+..++.|+.+...
T Consensus       248 g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t--~gK~lggG~~Pi-gav~~~~~i~~~~~~~~~~~~~T~~gnpl~~A  324 (451)
T PRK06062        248 GIVLIADEVMAGFGRTGKWFAIEHFGVVPDLIT--FAKGVNSGYVPL-GGVAISEAIAATFADRPYPGGLTYSGHPLACA  324 (451)
T ss_pred             CCEEEeeccccCCCcCcHHHHHHhcCCCCCeee--echhhhcCCcCc-EEEEEcHHHHHHhccCCCCCCCCCCCCHHHHH
Confidence            999999999966632       11223578776  899999532367 66777778887764211 11223444433333


Q ss_pred             HHHHHHccCCcHHHHHHHHHHHH-HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          291 VAFELSERIPHLGLRMKEHCHRA-LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       291 ~a~~~~~~~~~l~~~~~~~~~~~-~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ++...+..++.. ...++..+.. +++.+.|+++..+  +|...             +.+|.|.++.+++.
T Consensus       325 aa~a~L~~l~~~-~l~~~~~~~G~~~l~~~L~~l~~~--~~~v~-------------~vrG~Gl~~gve~~  379 (451)
T PRK06062        325 AAVATINAMEEE-GIVENAARIGAEVLGPGLRELAER--HPSVG-------------EVRGLGVFWALELV  379 (451)
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhc--CCcEE-------------eEeccccEEEEEEc
Confidence            333333222111 1223333333 3555556543111  11100             22368889999885

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.65  E-value=4.6e-14  Score=143.78  Aligned_cols=289  Identities=12%  Similarity=0.133  Sum_probs=173.9

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------C-CCEEEEeCCCchhHHHHHH------
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLT------  159 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~------  159 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..|++....       + ..+||.....||+......      
T Consensus        89 ~~~~~~~~la~~L~~~~p~~~~~v~f~~s---GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~  165 (445)
T PRK09221         89 MGHPLAFELAERLAELAPGGLDHVFFTNS---GSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIV  165 (445)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCCh
Confidence            356778889999999874  368999999   99999999985421       1 2479998999988642211      


Q ss_pred             ---H-hCCCccCeeEEEeCCC------------------CHHHHHHhhh---cCCceEEEEecCCCCcccccC----HHH
Q 013079          160 ---H-FFPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPE  210 (450)
Q Consensus       160 ---~-~~~~~~g~~v~~v~~~------------------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~  210 (450)
                         . +.+.  ...+..++..                  .++++++.+.   .+++.+|++|.+....|.+.|    +++
T Consensus       166 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~  243 (445)
T PRK09221        166 NNRKMFGGL--LPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQR  243 (445)
T ss_pred             hhhhccCCC--CCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHH
Confidence               0 0010  0112222221                  1356666663   146889999999999999988    999


Q ss_pred             HHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh------h
Q 013079          211 LSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------Q  277 (450)
Q Consensus       211 I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~  277 (450)
                      |.++|+++|+++|+||+++++..       .-.....|+++  ++|.+++...++ |.++.++++++.+....      .
T Consensus       244 l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~--~gK~l~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~  320 (445)
T PRK09221        244 LREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIIT--FAKGLTNGAIPM-GAVIASDEIYDAFMQGPEYAIEFF  320 (445)
T ss_pred             HHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEE--eccccccCcccc-eeeEEcHHHHHhhccCcccccccc
Confidence            99999999999999999855531       11223458776  999998544567 77788888877664210      0


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL  357 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~  357 (450)
                      +..+..++.+...++...+..++. ....++..++.+++.+.|+++..   +|.+.             +.+|.|.+..+
T Consensus       321 ~~~T~~~~pl~~aaa~a~L~~i~~-~~l~~~~~~~g~~l~~~l~~l~~---~~~v~-------------~vrg~Gl~~~v  383 (445)
T PRK09221        321 HGYTYSAHPVACAAGLATLDIYRE-EDLFERAAELAPYFEDAVHSLKG---LPHVI-------------DIRNIGLVAGI  383 (445)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhhcc---CCCEE-------------EEecCceEEEE
Confidence            111233433333333333322211 12345566677777777776521   11110             22367888888


Q ss_pred             EeCCH-----HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHH
Q 013079          358 DMETE-----EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW  432 (450)
Q Consensus       358 ~l~~~-----~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i  432 (450)
                      ++...     ..+..+...+..   .| +.+..+                            .+.|||+.. ...+++.+
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~---~G-v~~~~~----------------------------~~~lr~~Pp-l~~t~~ei  430 (445)
T PRK09221        384 ELAPRPGAPGARGYEAFMKCFE---KG-LLVRYT----------------------------GDTIALSPP-LIIEKAQI  430 (445)
T ss_pred             EEecccccccchHHHHHHHHHH---CC-eEEeec----------------------------CCEEEEECC-ccCCHHHH
Confidence            87521     123445555543   23 221110                            256999977 65555556


Q ss_pred             HHHHHHHHHh
Q 013079          433 SQFEKALSRM  442 (450)
Q Consensus       433 ~~l~~al~~~  442 (450)
                      +.+.++|++.
T Consensus       431 d~~~~~l~~~  440 (445)
T PRK09221        431 DELVDALGDA  440 (445)
T ss_pred             HHHHHHHHHH
Confidence            6655555443

>PRK07482 hypothetical protein; Provisional

Probab=99.65  E-value=2.2e-14  Score=146.74  Aligned_cols=242  Identities=10%  Similarity=0.110  Sum_probs=149.8

Q ss_pred             CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc------c-C-CCEEEEeCCCchhHHHHHHH----
Q 013079           95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC------S-S-GGHVVAARTLYGGTHALLTH----  160 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~------~-~-gd~Vi~~~~~y~~~~~~~~~----  160 (450)
                      ...++...+|.++|+++..  .+.++|++|   |+||+..|++...      . + ..+||.....||+.......    
T Consensus        90 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~~s---GSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~  166 (461)
T PRK07482         90 GHGTEASITLSKRIIDRAPAGMSKVYYGLS---GSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGL  166 (461)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCC
Confidence            3457788889999999874  467899999   9999999998652      1 2 35788888899885322110    


Q ss_pred             ------hCCCccCeeEEEeCCC------------------CHHHHHHhhh---cCCceEEEEecCCCCcccccC----HH
Q 013079          161 ------FFPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IP  209 (450)
Q Consensus       161 ------~~~~~~g~~v~~v~~~------------------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~  209 (450)
                            +.+...+  +..++.+                  +++++++.+.   .+++.+|++|.++...|.+.+    ++
T Consensus       167 ~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~  244 (461)
T PRK07482        167 SLFHQHFDLPIAR--VLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWP  244 (461)
T ss_pred             chhhhccCCCCCC--CEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHH
Confidence                  1110011  1222111                  3567777773   246899999999888888754    88


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh------
Q 013079          210 ELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------  276 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------  276 (450)
                      +|.++|++||+++|+||+++++..       .-....+|+++  ++|.+++.-.++ |.++.++++.+.+....      
T Consensus       245 ~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gKgl~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~  321 (461)
T PRK07482        245 AIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLIT--VAKGLTSAYAPL-SGSIVGEKVWDVLEQGSDEHGAI  321 (461)
T ss_pred             HHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEE--EccccccCcccc-ceeeecHHHHHHHhcccccCCcc
Confidence            999999999999999999966632       12233579998  899998532377 66777777777664211      


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                      .+..+..|+.++..++...+..++. +...++..+..++|.+.|++.-.+.....               +.+|.|.++.
T Consensus       322 ~h~~T~~gnpl~~Aaa~a~L~~~~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~v~---------------~vrG~Glm~g  385 (461)
T PRK07482        322 GHGWTYSGHPICAAAALANLDILER-ENLVGNAAEVGAYFRARLRAAFGDHPLVG---------------EVRGVGMLAA  385 (461)
T ss_pred             ccCCCCCcCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCEE---------------EEeeceeEEE
Confidence            1122334444444444443332211 11233345555666666654311100001               2347889999


Q ss_pred             EEeC
Q 013079          357 LDME  360 (450)
Q Consensus       357 ~~l~  360 (450)
                      +++.
T Consensus       386 iel~  389 (461)
T PRK07482        386 VEFV  389 (461)
T ss_pred             EEec
Confidence            9985

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.65  E-value=5.6e-14  Score=143.07  Aligned_cols=219  Identities=12%  Similarity=0.149  Sum_probs=138.6

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------C-CCEEEEeCCCchhHHHHHH------
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLT------  159 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~------  159 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..|++....       + ..+||+....||+......      
T Consensus        86 ~~~~~~~~la~~l~~~~p~~~~~v~f~~s---GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~  162 (442)
T PRK13360         86 MGHPKAFELANRIAEIAPGGLNHVFFTNS---GSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIV  162 (442)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCCh
Confidence            346778889999999874  467899999   99999999985421       2 2579999999988532210      


Q ss_pred             ---H-hCCCccCeeEEEeCCC------------------CHHHHHHhhh---cCCceEEEEecCCCCcccccC----HHH
Q 013079          160 ---H-FFPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPE  210 (450)
Q Consensus       160 ---~-~~~~~~g~~v~~v~~~------------------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~  210 (450)
                         . +.+.  ...+.+++..                  .++++++++.   .+++.+|++|.+....|.+.|    +++
T Consensus       163 ~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~  240 (442)
T PRK13360        163 PNRKAFGAL--LPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQR  240 (442)
T ss_pred             hhhhccCCC--CCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHH
Confidence               0 0110  0112223221                  1456777773   246789999999999999988    999


Q ss_pred             HHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh------h
Q 013079          211 LSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------Q  277 (450)
Q Consensus       211 I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~  277 (450)
                      |.++|+++|+++|+||+++++..       ......+|+++  ++|.+++...++ |.++.++++.+.+....      .
T Consensus       241 lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt--~gK~l~gG~~P~-gav~~~~~i~~~~~~~~~~~~~~~  317 (442)
T PRK13360        241 LREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLT--CAKGLTNGAIPM-GAVFVSSEIHDAFMQGPEAGIEFF  317 (442)
T ss_pred             HHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceee--eeeccccCccce-EEEEEcHHHHHHhhcCCccccccc
Confidence            99999999999999999855531       11223467775  899998644677 66777888877664311      0


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      +..+..++.+...++...+..++. ....++..++.+++.+.|+++
T Consensus       318 ~~~T~~g~pl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~l~~l  362 (442)
T PRK13360        318 HGYTYSGHPLACAAALATLDLYER-EGLLTRAARLAPYWEDALHSL  362 (442)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHh
Confidence            112233433333333333322221 123344555666777777654

>PRK07046 aminotransferase; Validated

Probab=99.64  E-value=4.6e-14  Score=143.90  Aligned_cols=170  Identities=18%  Similarity=0.125  Sum_probs=125.8

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHH-Hh-------CCCcc
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLT-HF-------FPRAC  166 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~-~~-------~~~~~  166 (450)
                      .++...++.+.|+++.+.+.+.|++|   |+||+..|++...  ...++|+.....||+...... ..       .+...
T Consensus       113 ~~~~~~~lAe~l~~~~~~~~v~F~nS---GtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~  189 (453)
T PRK07046        113 PSEDAAWVGEELARRFGLPYWQVATT---ATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLL  189 (453)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEECC---HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCC
Confidence            45677788888888888889999999   9999999998542  224678888888998642211 10       00001


Q ss_pred             Ce------eEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCC---CCCC
Q 013079          167 NI------TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFS---PLVL  233 (450)
Q Consensus       167 g~------~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~---~~~~  233 (450)
                      |+      .+..++.+|++++++.+..+++.+|++|.+....|.+.|    +++|.++|+++|+++|+||+++   ++..
T Consensus       190 g~~~~~~~~~~~~~~nd~~~l~~~l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg  269 (453)
T PRK07046        190 GQVHDLTATTRVVEFNDLAALEAALADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGG  269 (453)
T ss_pred             CCCccccCceEeeCCCCHHHHHHHhCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcc
Confidence            21      234455569999999884467899999999888888865    8999999999999999999985   2221


Q ss_pred             Cc--cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH
Q 013079          234 SP--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM  273 (450)
Q Consensus       234 ~~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~  273 (450)
                      ..  ..+.+|+++  ++|.+|+ |.++ |++++++++++.+.
T Consensus       270 ~~~~~gv~PDi~t--~gK~lgg-G~Pi-~av~g~~~i~~~~~  307 (453)
T PRK07046        270 YTRAHGLEPDFLV--VGKPIAG-GVPC-AVYGFSAELAERAQ  307 (453)
T ss_pred             hhHHhCCCcccee--ehhhhcC-CCcc-eeeeehHHHHHHHh
Confidence            11  123478887  8999995 6888 88888988888775

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.64  E-value=6.7e-14  Score=141.70  Aligned_cols=291  Identities=12%  Similarity=0.140  Sum_probs=174.5

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhcc-------CCCEEEEeCCCchhHHHHHHHhCC---
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCS-------SGGHVVAARTLYGGTHALLTHFFP---  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~-------~gd~Vi~~~~~y~~~~~~~~~~~~---  163 (450)
                      ..++...++.++|+++.+.  +.++|++|   |+||+..|++....       ...+||.....||+..........   
T Consensus        83 ~~~~~~~~la~~L~~~~p~~~~~v~f~~S---GsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~  159 (428)
T PRK07986         83 ITHPPAIELCRKLVAMTPQPLECVFLADS---GSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDN  159 (428)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCch
Confidence            4577888899999998753  67899999   99999999985431       235799999999874322111000   


Q ss_pred             ---CccC---eeEEEeCC-----------CCHHHHHHhhhc--CCceEEEEecC-CCCccccc----CHHHHHHHHHhcC
Q 013079          164 ---RACN---ITTTFVDI-----------SDHEMVNSAIVQ--GRTKVLYFESI-SNPTLAVA----NIPELSRLAHDKG  219 (450)
Q Consensus       164 ---~~~g---~~v~~v~~-----------~d~~~l~~ai~~--~~t~lv~i~~~-~NptG~v~----~l~~I~~la~~~g  219 (450)
                         ..++   ..+.+++.           .|++++++.+..  +++.+|++|++ +...|.+.    .+++|.++|+++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g  239 (428)
T PRK07986        160 SMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREG  239 (428)
T ss_pred             hhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence               0000   01122221           256677777732  46788999985 66666543    2899999999999


Q ss_pred             CEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHh----hhhhhccCCCc
Q 013079          220 VTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH----QGALMLLGPTM  287 (450)
Q Consensus       220 i~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~----~~~~~~~g~~~  287 (450)
                      +++|+||+++++..       ......+|+++  ++|.+++ | .++ |.+++++++.+.+....    ....+..|+.+
T Consensus       240 ~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~g-G~~p~-~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~  315 (428)
T PRK07986        240 ILLIADEIATGFGRTGKLFACEHAGIAPDILC--LGKALTG-GTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGNPL  315 (428)
T ss_pred             CEEEEeccccCCccCCCeeeecccCCCCCEEE--echhhhC-CcccC-cchhchHHHHHHhhcCCCCccccCCCCCcCHH
Confidence            99999999855531       11223468886  8999984 5 466 77788888888775421    01122334433


Q ss_pred             hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013079          288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR  367 (450)
Q Consensus       288 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~  367 (450)
                      ...++...++.++.. ...++..++.+++.+.|+++..   +|.+.             +.+|.|.++.+++.....+..
T Consensus       316 ~~aaa~a~L~~i~~~-~~~~~~~~~g~~l~~~l~~l~~---~~~i~-------------~vRg~Gl~~~ve~~~~~~~~~  378 (428)
T PRK07986        316 ACAVANASLSLLESG-DWQQQVAAIEAQLREELAPLRD---APMVA-------------DVRVLGAIGVVETTRPVNMAA  378 (428)
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHhc---CCCEE-------------eEeccceEEEEEeCCcccHHH
Confidence            333333333222211 2345556666777777765421   12111             234788899999974433556


Q ss_pred             HHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          368 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       368 ~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      +...+..   .|+ .+..                         .   .+.|||+.. +.-+++.++.+.++|.+.-
T Consensus       379 ~~~~l~~---~Gl-~~~~-------------------------~---g~~i~~~Pp-l~it~~ei~~~~~~l~~~l  421 (428)
T PRK07986        379 LQRFFVE---QGV-WIRP-------------------------F---GKLIYLMPP-YIILPEQLQRLTAAVNRAV  421 (428)
T ss_pred             HHHHHHH---CCc-EEEe-------------------------c---CCEEEEeCC-CCCCHHHHHHHHHHHHHHH
Confidence            6666654   232 1110                         0   146888777 6555666666666665543

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.63  E-value=3.1e-15  Score=148.07  Aligned_cols=213  Identities=15%  Similarity=0.223  Sum_probs=141.2

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ....+.++++..|+++|++..+| |+|   .|.+|.+++.+++++||.|++.+.+|.++...+.     +.|..++|+++
T Consensus        64 p~G~I~eAe~~aA~~fGAd~t~flvnG---sT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~ali-----l~ga~Pvyi~p  135 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGADKTFFLVNG---STSGNQAMIMALCRPGDKVLVDRNCHKSVYNALI-----LSGAIPVYIPP  135 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTESEEEEESSH---HHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHH-----HHTEEEEEEEE
T ss_pred             CccHHHHHHHHHHHhcCCCeEEEEecC---chHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHH-----HcCCeEEEecC
Confidence            44578999999999999998755 566   7888999999999999999999999999998875     46888888765


Q ss_pred             C----------CH-----HHHHHhhhc-CCce---EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCc
Q 013079          176 S----------DH-----EMVNSAIVQ-GRTK---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP  235 (450)
Q Consensus       176 ~----------d~-----~~l~~ai~~-~~t~---lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~  235 (450)
                      .          ++     +.++++++. ++.+   +|+|.+|+. -|.+.|+++|+++|++++++|+|||++ +++.+.+
T Consensus       136 ~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~  214 (417)
T PF01276_consen  136 EDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHP  214 (417)
T ss_dssp             EE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSG
T ss_pred             CccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCC
Confidence            2          34     889888842 3444   489888865 699999999999999999999999998 5555542


Q ss_pred             -----cCCCCe-------EEEeCCCCccccCccceEEEEEc-CHH--HHHHHHHHhhhhhhccCCCchHHHHHHHHc-cC
Q 013079          236 -----ARLGAD-------VVVHSISKFISGGADIIAGAVCG-PAN--LVNSMMDLHQGALMLLGPTMNPKVAFELSE-RI  299 (450)
Q Consensus       236 -----~~~g~d-------i~~~S~sK~~g~~g~~igG~l~~-~~~--~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~  299 (450)
                           ..+|+|       +++.|.||.++.-  .-++++-. ...  -.+++..... ....+.+.....+.....+ .+
T Consensus       215 lp~~a~~~gad~~~~~~~~vvqS~HKtL~al--tQts~lh~~~~~~v~~~~~~~~l~-~~~TTSPSY~lmASlD~a~~~m  291 (417)
T PF01276_consen  215 LPRSALALGADRPNDPGIIVVQSTHKTLPAL--TQTSMLHVKGDRIVDHERVNEALS-MHQTTSPSYPLMASLDVARAQM  291 (417)
T ss_dssp             GGTTCSSTTSS-CTSBEEEEEEEHHHHSSS---TT-EEEEEETCCCTTHHHHHHHHH-HHS-SS--HHHHHHHHHHHHHH
T ss_pred             CccchhhccCccccccceeeeechhhccccc--ccceEEEecCCCcccHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHH
Confidence                 345899       9999999999743  34466633 322  2344443222 1112223222222222211 12


Q ss_pred             --CcHHHHHHHHHHHHHHHHHHHH
Q 013079          300 --PHLGLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       300 --~~l~~~~~~~~~~~~~l~~~L~  321 (450)
                        ..-....++..++++.+++.|+
T Consensus       292 ~~~~G~~l~~~~i~~a~~~R~~i~  315 (417)
T PF01276_consen  292 EEEEGRELLEEAIELAEEFRKKIN  315 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHH
Confidence              1122344555666777777774

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.63  E-value=2e-13  Score=140.80  Aligned_cols=204  Identities=15%  Similarity=0.125  Sum_probs=133.9

Q ss_pred             EEEecChHHHHHHHHHHHHHhcc--------------------------CCCEEEEeCCCchhHHHHHHHhCCCccCe--
Q 013079          117 AYCTASDKAGMSAISSVLMQLCS--------------------------SGGHVVAARTLYGGTHALLTHFFPRACNI--  168 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~--------------------------~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--  168 (450)
                      .+||+|   ||+||..++.....                          ++..|+++..+|.++...+..     .|+  
T Consensus       162 G~~tsG---GS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~-----lglg~  233 (522)
T TIGR03799       162 GAFCSG---GTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADV-----LGIGR  233 (522)
T ss_pred             eEEcCc---hHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHH-----cCCCc
Confidence            589999   99999998865311                          124688999999999877642     343  


Q ss_pred             -eEEEeCCC-----CHHHHHHhhhc---CCceEEEEe--cCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCc-
Q 013079          169 -TTTFVDIS-----DHEMVNSAIVQ---GRTKVLYFE--SISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSP-  235 (450)
Q Consensus       169 -~v~~v~~~-----d~~~l~~ai~~---~~t~lv~i~--~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~-  235 (450)
                       +++.++.+     |+++|+++|..   .+++.++|.  ..++.||.+.|+++|+++|+++|+++|||++|+... ..+ 
T Consensus       234 ~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~  313 (522)
T TIGR03799       234 DNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNT  313 (522)
T ss_pred             ccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHH
Confidence             56666654     89999998831   455555554  556799999999999999999999999999994332 222 


Q ss_pred             -----cCC-CCeEEEeCCCCccccCccceEEEE-EcCHHHHHHHHHH-----hhhh-----hhccCCCch-HHHHHHHHc
Q 013079          236 -----ARL-GADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDL-----HQGA-----LMLLGPTMN-PKVAFELSE  297 (450)
Q Consensus       236 -----~~~-g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~-----~~~~-----~~~~g~~~~-~~~a~~~~~  297 (450)
                           ..+ ++|.++.|.||++.+|-. + |++ +.++.+.+.+...     ..+.     ....++... ....+..++
T Consensus       314 ~r~~l~gle~aDSit~d~HK~l~~P~g-~-G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~  391 (522)
T TIGR03799       314 YRHLLKGIERADSVTIDAHKQLYVPMG-A-GMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLH  391 (522)
T ss_pred             HHHHhcCchhCCEEEEChhhcCCcCcc-c-EEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHH
Confidence                 222 689999999996554432 4 666 4555555444321     0000     011122221 122333333


Q ss_pred             --cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCC
Q 013079          298 --RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYP  330 (450)
Q Consensus       298 --~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p  330 (450)
                        +...+...+++..++++++.+.|++.+. ++..|
T Consensus       392 ~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~  427 (522)
T TIGR03799       392 IIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTE  427 (522)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC
Confidence              2344667777888999999999988754 55543

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.63  E-value=6.4e-14  Score=149.54  Aligned_cols=150  Identities=20%  Similarity=0.244  Sum_probs=116.9

Q ss_pred             CCChhHHHHHHHHHHHhCCCeEEEec-ChHHHHHHHHHHHHHhc----c---C-CCEEEEeCCCchhHHHHHHHhCCCcc
Q 013079           96 HFNPTVLNLSRQMAALEGTEAAYCTA-SDKAGMSAISSVLMQLC----S---S-GGHVVAARTLYGGTHALLTHFFPRAC  166 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~~~~ts-g~~~gt~ai~~al~~l~----~---~-gd~Vi~~~~~y~~~~~~~~~~~~~~~  166 (450)
                      ...+.+.++++.++++.|.+.+-+.. +   |+.+..++++++.    .   + .++|+++...|+.....+.     ..
T Consensus       540 G~lq~i~elq~~l~eLtGmd~~Sl~p~s---GA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~-----~~  611 (954)
T PRK12566        540 GYRAMIDELEAWLCAITGFDAICMQPNS---GAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQ-----MA  611 (954)
T ss_pred             CHHHHHHHHHHHHHHHHCCCeEeecCCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHH-----HC
Confidence            33467889999999999999886666 5   7777766666542    1   2 3578888888865544443     26


Q ss_pred             CeeEEEeCCC-----CHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCC-c
Q 013079          167 NITTTFVDIS-----DHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLS-P  235 (450)
Q Consensus       167 g~~v~~v~~~-----d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~-~  235 (450)
                      |++++.++.+     |+++|++.+ +   +++++|.+.+|++-.+...++++|+++||++|+++++|.++  +...+. |
T Consensus       612 GieVv~Vp~D~~G~iDle~L~a~I-~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P  690 (954)
T PRK12566        612 GMRVVIVECDPDGNVDLDDLKAKA-AAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARP  690 (954)
T ss_pred             CCEEEEeccCCCCCcCHHHHHHHh-hccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCCh
Confidence            8899988774     899999998 5   67888888888876666678999999999999999999998  344444 6


Q ss_pred             cCCCCeEEEeCCCCccccC
Q 013079          236 ARLGADVVVHSISKFISGG  254 (450)
Q Consensus       236 ~~~g~di~~~S~sK~~g~~  254 (450)
                      .++|+|++.+++||++++|
T Consensus       691 g~~GADi~~~s~HKtf~~P  709 (954)
T PRK12566        691 ADIGADVSHMNLHKTFCIP  709 (954)
T ss_pred             hhcCCCEEEecCCcccCcC
Confidence            7889999999999998743

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.63  E-value=7.5e-14  Score=142.42  Aligned_cols=240  Identities=12%  Similarity=0.088  Sum_probs=145.5

Q ss_pred             CCChhHHHHHHHHHHHhCC----CeE-EEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCC---c
Q 013079           96 HFNPTVLNLSRQMAALEGT----EAA-YCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR---A  165 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~----~~~-~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~---~  165 (450)
                      ..++...++.++|+++...    ... ++++|   |+||+..|++...  ....+|++....||+...........   .
T Consensus        79 ~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~s---GsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~  155 (442)
T TIGR00709        79 LTTPLKDAFIEALLNIIPKRKMDYKLQFPGPS---GADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAK  155 (442)
T ss_pred             cCcHHHHHHHHHHHHhCCCcCCCccEEEeCCC---HHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhh
Confidence            4577888899999998753    244 45689   9999999998542  22357999898998875443221100   0


Q ss_pred             cC-----eeEEEeCCCC-------------H----HHHHHhhh-----cCCceEEEEecCCCCccccc-C---HHHHHHH
Q 013079          166 CN-----ITTTFVDISD-------------H----EMVNSAIV-----QGRTKVLYFESISNPTLAVA-N---IPELSRL  214 (450)
Q Consensus       166 ~g-----~~v~~v~~~d-------------~----~~l~~ai~-----~~~t~lv~i~~~~NptG~v~-~---l~~I~~l  214 (450)
                      .+     ..+.+++..+             .    +.+++.+.     .+++.+|+++++++..|.+. |   +++|.++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~l  235 (442)
T TIGR00709       156 NAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREV  235 (442)
T ss_pred             ccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHH
Confidence            00     1122333221             1    12333331     14688999999988888774 3   8899999


Q ss_pred             HHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCc
Q 013079          215 AHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM  287 (450)
Q Consensus       215 a~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~  287 (450)
                      |++||+++|.||+|+++...       -.....|+++  ++|.+++ |+++ |+++.+++ ++.+.... +..+..|+.+
T Consensus       236 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~~-G~Pi-gav~~~~~-~~~~~~~~-~~~T~~gnpl  309 (442)
T TIGR00709       236 TRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVV--MSKAVGG-GLPL-AVLLIAPE-FDAWQPAG-HTGTFRGNQL  309 (442)
T ss_pred             HHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEE--EcccccC-Cccc-EEEEEchH-HhccCCCc-CCCCCCcCHH
Confidence            99999999999999666421       1123478888  8999997 7998 77777766 44432111 1223444444


Q ss_pred             hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       288 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      .+.++...+..++. ....++..++.++|.+.|+++..+  +|...             +.+|.|.++.+++.
T Consensus       310 a~aaa~a~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~v~-------------~vrG~Gl~~~ie~~  366 (442)
T TIGR00709       310 AMVTGTEALNYWKD-DNLAQNAQERGERITSFLDDMIKE--HPCIG-------------NVRGRGLMQGIMIV  366 (442)
T ss_pred             HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCee-------------eeeccceEEEEEEc
Confidence            44444444332211 122344566667777777653211  11100             33478999999985

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.63  E-value=9e-14  Score=141.34  Aligned_cols=219  Identities=15%  Similarity=0.182  Sum_probs=144.3

Q ss_pred             CCChhHHHHHHHHHHHhC-CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC---------C
Q 013079           96 HFNPTVLNLSRQMAALEG-TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF---------P  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g-~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~---------~  163 (450)
                      ..++...++.++|+++.. .+.++|++|   |+||+..|++...  ....+|+.....||+.........         +
T Consensus        90 ~~~~~~~~la~~l~~~~p~~~~v~f~~s---GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~  166 (428)
T PRK12389         90 TPTELEIEFAKMLKEAIPSLEKVRFVNS---GTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTP  166 (428)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcEEEEeCC---HHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCC
Confidence            356777888888888764 467899999   9999999998542  223578888888988543321110         0


Q ss_pred             CccC------eeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          164 RACN------ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       164 ~~~g------~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~  231 (450)
                      ...+      ..+..++..|++.+++.+..  +++.+|++|.+.+..|.+.|    +++|.++|+++|+++|+||+++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~  246 (428)
T PRK12389        167 DSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF  246 (428)
T ss_pred             CCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence            0011      13344556689999888832  46789999999999999887    999999999999999999999655


Q ss_pred             CCC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh--hhhhhccCCCchHHHHHHHHccCCcHH
Q 013079          232 VLS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--QGALMLLGPTMNPKVAFELSERIPHLG  303 (450)
Q Consensus       232 ~~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--~~~~~~~g~~~~~~~a~~~~~~~~~l~  303 (450)
                      ...      .....+|+++  ++|.+++ |.++ |.+++++++++.+....  ....+..|+.+...++.+.+..++.. 
T Consensus       247 Rt~~~~a~~~~gv~PDivt--~gK~lgg-G~Pi-~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~-  321 (428)
T PRK12389        247 RFMYGGAQDLLGVEPDLTA--LGKIIGG-GLPI-GAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE-  321 (428)
T ss_pred             ccCcchhhHHhCCCCCeee--echhhcC-CCce-eEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc-
Confidence            221      1123478765  8999985 6888 66688888887764211  11122344444444443433333221 


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 013079          304 LRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~  322 (450)
                      ...++..++.++|.+.|++
T Consensus       322 ~l~~~~~~~g~~l~~~L~~  340 (428)
T PRK12389        322 GVYEKLDRLGAMLEEGILE  340 (428)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            2344455566666666654

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.63  E-value=1.7e-13  Score=139.94  Aligned_cols=239  Identities=16%  Similarity=0.178  Sum_probs=151.5

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc-------cC-CCEEEEeCCCchhHHHHHHH-----
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC-------SS-GGHVVAARTLYGGTHALLTH-----  160 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~-------~~-gd~Vi~~~~~y~~~~~~~~~-----  160 (450)
                      ..++...++.++|+++.+.  +.++|++|   |+||+..|++...       .+ ..+||.....||+.......     
T Consensus        94 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~s---GseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~  170 (453)
T PRK06943         94 CTHEPAIELAERLAALTGGTLGHAFFASD---GASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVA  170 (453)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCC---CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCCh
Confidence            4567778899999998764  47899999   9999999998652       12 35799999999885422110     


Q ss_pred             -----hCCCccCeeEEEeCCC-----------------CHHHHHHhhh--cCCceEEEEec-CCCCcccccC----HHHH
Q 013079          161 -----FFPRACNITTTFVDIS-----------------DHEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPEL  211 (450)
Q Consensus       161 -----~~~~~~g~~v~~v~~~-----------------d~~~l~~ai~--~~~t~lv~i~~-~~NptG~v~~----l~~I  211 (450)
                           +.+. . ..+.+++..                 +++++++.+.  .+++.+|++|. ++...|.+.+    +++|
T Consensus       171 ~~~~~~~~~-~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~l  248 (453)
T PRK06943        171 LFKDAYDPL-I-RHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGL  248 (453)
T ss_pred             hhhcccccC-C-CCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHH
Confidence                 0010 0 012222211                 2466777763  25788999999 4888887754    8899


Q ss_pred             HHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHh-----hh
Q 013079          212 SRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH-----QG  278 (450)
Q Consensus       212 ~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~-----~~  278 (450)
                      .++|++||+++|.||+++++..       ....+.+|+++  ++|.+++ | .++ |.++.++++.+.+....     .+
T Consensus       249 r~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt--~gKgl~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~  324 (453)
T PRK06943        249 RALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC--LSKGISG-GYLPL-SLVLSRDAIFAAFYDDDVTRGFLH  324 (453)
T ss_pred             HHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe--eehhhcc-Ccccc-eEEEEcHHHHHhhcccCccCCccC
Confidence            9999999999999999966632       12233578888  8999995 5 478 77788888887664211     01


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      ..+..|+.+...++...+..++. +...++..+..++|.+.|+++. +  +|.+.             +.+|.|.++.++
T Consensus       325 ~~T~~gnpl~~aaa~a~L~~i~~-~~l~~~~~~~G~~l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~gve  387 (453)
T PRK06943        325 SHSYTGNPLACRAALATLDLFAE-DDVLARNARKSARLRAALAPLA-A--HPQVR-------------HLRQRGTIFAFD  387 (453)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHh-c--CCCEE-------------eEeccccEEEEE
Confidence            22234444444444333332221 1123444555667777776542 1  22211             234789999999


Q ss_pred             eC
Q 013079          359 ME  360 (450)
Q Consensus       359 l~  360 (450)
                      +.
T Consensus       388 l~  389 (453)
T PRK06943        388 VA  389 (453)
T ss_pred             Ec
Confidence            86

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.62  E-value=2.9e-13  Score=138.25  Aligned_cols=290  Identities=13%  Similarity=0.187  Sum_probs=170.5

Q ss_pred             ChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC---C-CccCe-
Q 013079           98 NPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF---P-RACNI-  168 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~---~-~~~g~-  168 (450)
                      ++...+|.++|+++.+.  +.++|++|   |+||+..|++...  ....+||.....||+.........   . ...++ 
T Consensus        95 ~~~~~~lae~L~~~~p~~~~~v~f~~S---GsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~  171 (457)
T PRK05639         95 SERAIRVAEKLAEISPIENPKVLFGLS---GSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFS  171 (457)
T ss_pred             CHHHHHHHHHHHhhCCCCcCEEEEeCc---hHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCC
Confidence            56777899999998753  57899999   9999999998542  233578888888988543321110   0 00111 


Q ss_pred             ----eEEEeCCC-------------CH--------HHHHHhhh-----cCCceEEEEecCCCCcccccC----HHHHHHH
Q 013079          169 ----TTTFVDIS-------------DH--------EMVNSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRL  214 (450)
Q Consensus       169 ----~v~~v~~~-------------d~--------~~l~~ai~-----~~~t~lv~i~~~~NptG~v~~----l~~I~~l  214 (450)
                          .+.+++..             |.        +.+++.+.     .+++.+|++|.++...|.+.|    +++|.++
T Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~l  251 (457)
T PRK05639        172 PLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKL  251 (457)
T ss_pred             CCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence                23333332             12        23444331     357899999999988888754    8899999


Q ss_pred             HHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCc
Q 013079          215 AHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM  287 (450)
Q Consensus       215 a~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~  287 (450)
                      |++||+++|+||+++++..       ....+.+|+++  ++|.+++ |.++ |++++++++++ ... .....+..++.+
T Consensus       252 c~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~g-G~pi-~av~~~~~i~~-~~~-~~~~~T~~g~p~  325 (457)
T PRK05639        252 LDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLII--FGKGVAS-GMGL-SGVIGRKELMD-LTS-GSALLTPAANPV  325 (457)
T ss_pred             HHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEE--echhhcC-CCcc-eeEEehHHHHh-hcC-CCcccCCCcCHH
Confidence            9999999999999865532       11233578888  8999995 5777 88888888877 221 111112233333


Q ss_pred             hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC------
Q 013079          288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------  361 (450)
Q Consensus       288 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~------  361 (450)
                      ...++...+..++. +...++..++.++|.+.|+++..+...+.               +.+|.|.++.+++..      
T Consensus       326 ~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~~---------------~VrG~Gl~~gve~~~~~~~~~  389 (457)
T PRK05639        326 ISAAAEATLEIIEE-ENLLKNALKVGEFIKKRLLEMKESFEVIG---------------DVRGKGLMIGVEIVKENGKPD  389 (457)
T ss_pred             HHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHHHhCCCEE---------------eeccceeEEEEEEecCCCCCC
Confidence            32222222222211 12234445556667777765311100111               234789999999842      


Q ss_pred             HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHH
Q 013079          362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEK  437 (450)
Q Consensus       362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~  437 (450)
                      .+.+..+...+..   .|++. ..                         .+...+.|||+.. .    +++++.++.|.+
T Consensus       390 ~~~~~~~~~~~~~---~Gv~~-~~-------------------------~g~~~~~lr~~Pp-l~it~~~id~~~~~l~~  439 (457)
T PRK05639        390 PELTGKICWRAFE---LGLIL-PS-------------------------YGMFGNVIRITPP-LVITKEIAEKGLEIMER  439 (457)
T ss_pred             HHHHHHHHHHHHh---CCeEE-ee-------------------------cCCCCCEEEEeCC-CccCHHHHHHHHHHHHH
Confidence            2234456655553   23221 11                         0111367999888 5    445555566666


Q ss_pred             HHHHh
Q 013079          438 ALSRM  442 (450)
Q Consensus       438 al~~~  442 (450)
                      ++..+
T Consensus       440 ~l~~~  444 (457)
T PRK05639        440 AIKDA  444 (457)
T ss_pred             HHHHH
Confidence            66554

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.62  E-value=4.6e-14  Score=139.20  Aligned_cols=243  Identities=19%  Similarity=0.227  Sum_probs=148.6

Q ss_pred             HHHHHHHHhCCC----eE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCC-C----ccCeeEEEe
Q 013079          104 LSRQMAALEGTE----AA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP-R----ACNITTTFV  173 (450)
Q Consensus       104 l~~~iA~l~g~~----~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~-~----~~g~~v~~v  173 (450)
                      +.+++.++++++    .+ +=.-|   |+.|+.+++.+|++|||+|+..+..+++....-..... +    ...+++..+
T Consensus        71 a~~ra~~lF~~~~~~w~anvqp~S---Gs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y  147 (399)
T PF00464_consen   71 AIERAKELFGAEPKEWYANVQPHS---GSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPY  147 (399)
T ss_dssp             HHHHHHHHHT-STTTEEEE---SS---HHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEE
T ss_pred             HHHHHHHHhCCCcccceEEeecCC---chHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEee
Confidence            556677789998    55 44567   99999999999999999999998887765432110000 0    012334443


Q ss_pred             CCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCe
Q 013079          174 DIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGAD  241 (450)
Q Consensus       174 ~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~d  241 (450)
                      +++      |.+++++.+...++++|++-..+.|  ...|++++.++|++.|+++++|.++      +++..+|.+. +|
T Consensus       148 ~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~-AD  224 (399)
T PF00464_consen  148 PVDPDTGLIDYDELEKLAKEHKPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPY-AD  224 (399)
T ss_dssp             EB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCT-SS
T ss_pred             eeecCCCeECHHHHHHHHhhcCCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCcccc-ce
Confidence            333      8999999886679999998655443  4678999999999999999999997      4455688876 99


Q ss_pred             EEEeCCCCccccCccceEEEEEcC--------------HHHHHHHHHHhhhhhhccCCCchHHHHHH--HHccCC-cHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGP--------------ANLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERIP-HLGL  304 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~--------------~~~~~~l~~~~~~~~~~~g~~~~~~~a~~--~~~~~~-~l~~  304 (450)
                      ++++|.||.+.||-   ||+++.+              +++.+++....-.. ...++.+...++.+  +..... ...+
T Consensus       225 vvt~sThKtl~GPr---ggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~-~qg~~h~~~iaalAval~ea~~~~fk~  300 (399)
T PF00464_consen  225 VVTGSTHKTLRGPR---GGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPG-LQGGPHMHRIAALAVALKEALSPEFKE  300 (399)
T ss_dssp             EEEEESSGGG-SSS----EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTT-T-SS--HHHHHHHHHHHHHHTSHHHHH
T ss_pred             EEEeeccccccccC---ceEEEEcCCccccCCcccccHHHHHHHhccccCCC-cccCcchhHHHHHHHHHhcccCHHHHH
Confidence            99999999998775   6888877              67777776543211 12233333333322  222222 3566


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013079          305 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN  374 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~~~~~l~~  374 (450)
                      ..++..++++.|++.|.+.|+++..-+..                  ..++++++.    +...++.++++..+
T Consensus       301 Ya~qVv~NAk~La~~L~~~G~~v~~ggTd------------------~H~vlvd~~~~~~~g~~a~~~Le~~gI  356 (399)
T PF00464_consen  301 YAKQVVKNAKALAEALQERGFKVVTGGTD------------------NHQVLVDLRSFGIDGKEAEKALEEAGI  356 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-EEGGGS-S------------------SSEEEEEGGGGTS-HHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHHHHhhCCcEEEECCCC------------------CCeEEEEecccccchHHHHHHHHhcCe
Confidence            77778999999999999999987653322                  238888885    23345556665553

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.62  E-value=7.5e-14  Score=142.66  Aligned_cols=219  Identities=14%  Similarity=0.141  Sum_probs=141.8

Q ss_pred             CChhHHHHHHHHHHHhC-CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHh---------CCC
Q 013079           97 FNPTVLNLSRQMAALEG-TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF---------FPR  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g-~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~---------~~~  164 (450)
                      .++...++.++|++... .+.+.|++|   |+||+..|++...  ...++|+.....||+....+...         .+.
T Consensus       137 ~~~~~~~lAe~l~~~~p~~~~v~f~~S---GsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~  213 (474)
T PLN02482        137 PCLLENVLAEMVIDAVPSVEMVRFVNS---GTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPD  213 (474)
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCC---hHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCC
Confidence            45566677788887764 578999999   9999999998542  22367888888899865322100         010


Q ss_pred             ccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          165 ACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       165 ~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                      ..|+      .+..++.+|++++++.+..  +++.+|++|.+....|.+.|    +++|.++|++||+++|+||+++++.
T Consensus       214 ~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR  293 (474)
T PLN02482        214 SPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFR  293 (474)
T ss_pred             CCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCee
Confidence            0121      2334555689999988832  46789999999988898876    6689999999999999999985552


Q ss_pred             CC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHHH
Q 013079          233 LS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGL  304 (450)
Q Consensus       233 ~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~  304 (450)
                      ..      .....+|+++  ++|.+| .|.++ |.+++++++++.+.....  ...+..++.+...++...+..++. +.
T Consensus       294 ~g~~ga~~~~gv~PDi~t--~gK~lg-gG~Pi-gav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~-~~  368 (474)
T PLN02482        294 IAYGGAQEYFGITPDLTT--LGKVIG-GGLPV-GAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ-PG  368 (474)
T ss_pred             cCcchHhHHhCCCCCEEE--ecchhh-CCCce-EEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc-cC
Confidence            21      1122468765  899999 46888 666888888887742111  111223334443333333333322 22


Q ss_pred             HHHHHHHHHHHHHHHHHhC
Q 013079          305 RMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~  323 (450)
                      ..++..++.++|.+.|++.
T Consensus       369 ~~~~~~~~g~~l~~~L~~l  387 (474)
T PLN02482        369 TYEYLDKITKKLIQGILEA  387 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455566667777777654

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.62  E-value=2.8e-13  Score=124.92  Aligned_cols=220  Identities=15%  Similarity=0.128  Sum_probs=161.3

Q ss_pred             hhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           99 PTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ...+++.+-+-..+...   ..++..+   |+.+..+++..++.|||.|++....--+.+.  .+..++ .|++|..++.
T Consensus        50 qIm~~v~egikyVFkT~n~~tf~isgs---Gh~g~E~al~N~lePgd~vLv~~~G~wg~ra--~D~~~r-~ga~V~~v~~  123 (385)
T KOG2862|consen   50 QIMDEVLEGIKYVFKTANAQTFVISGS---GHSGWEAALVNLLEPGDNVLVVSTGTWGQRA--ADCARR-YGAEVDVVEA  123 (385)
T ss_pred             HHHHHHHHHHHHHhccCCCceEEEecC---CcchHHHHHHhhcCCCCeEEEEEechHHHHH--HHHHHh-hCceeeEEec
Confidence            34566777777776543   3456666   9999999999999999999887665444332  245555 8999999876


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccC-HHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCC
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSI  247 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~-l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~  247 (450)
                      +     .++.+.+++...++++|++.+.-..||.++| ++.+.++|++|+++++||.+-  +...+...++|+|+.....
T Consensus       124 ~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgS  203 (385)
T KOG2862|consen  124 DIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGS  203 (385)
T ss_pred             CcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecc
Confidence            5     7899999997788999999999999999999 778899999999999999985  6666677788999999999


Q ss_pred             CCccccCccceEEEEEcCHHHHHHHHHHhhh--------------h-----hhccCCCchHHHH-----HHHHccCCcHH
Q 013079          248 SKFISGGADIIAGAVCGPANLVNSMMDLHQG--------------A-----LMLLGPTMNPKVA-----FELSERIPHLG  303 (450)
Q Consensus       248 sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~--------------~-----~~~~g~~~~~~~a-----~~~~~~~~~l~  303 (450)
                      .|.++.|.. + +.++.++...++++.....              +     .+..-.+++....     ++.+...+-++
T Consensus       204 QKaL~aP~G-L-siisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~  281 (385)
T KOG2862|consen  204 QKALGAPAG-L-SIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLE  281 (385)
T ss_pred             hhhcCCCCC-c-ceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999996643 3 6677777777766543220              0     0111112222211     12222234578


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCe
Q 013079          304 LRMKEHCHRALIFARRMKKLGLK  326 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~~  326 (450)
                      .+.+++++..+++...|+++|.+
T Consensus       282 ~~~~rH~e~s~~l~~~l~~~GLq  304 (385)
T KOG2862|consen  282 NSWRRHREMSKWLKLSLEALGLQ  304 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcc
Confidence            88999999999999999998873

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.61  E-value=2.2e-13  Score=137.85  Aligned_cols=290  Identities=13%  Similarity=0.145  Sum_probs=172.4

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHhCC--
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFP--  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~--  163 (450)
                      ..++...++.++|+++.+  .+.++|++|   |+||+..|++....       ++ .+|++....||+..........  
T Consensus        80 ~~~~~~~~lae~L~~~~p~~~~~v~f~~S---GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~  156 (422)
T PRK05630         80 LTHEPAIKLTRKLLNLTDNGLDHVFYSDS---GSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPE  156 (422)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCc
Confidence            456778889999999874  468999999   99999999985421       22 5799999999885432211100  


Q ss_pred             ----CccC---eeEEEeCCC--------C----HHHHHHhhhcCCceEEEEecC-CCCcccccC----HHHHHHHHHhcC
Q 013079          164 ----RACN---ITTTFVDIS--------D----HEMVNSAIVQGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKG  219 (450)
Q Consensus       164 ----~~~g---~~v~~v~~~--------d----~~~l~~ai~~~~t~lv~i~~~-~NptG~v~~----l~~I~~la~~~g  219 (450)
                          ...+   ..+.+++..        +    .+.+++.+ .+++.+|++|.. +...|.+.+    +++|.++|++||
T Consensus       157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g  235 (422)
T PRK05630        157 GGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLI-DETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHD  235 (422)
T ss_pred             ccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHH-hhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcC
Confidence                0000   012222211        1    23455555 568999999995 888787643    889999999999


Q ss_pred             CEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-----hhhhhccCCCc
Q 013079          220 VTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-----QGALMLLGPTM  287 (450)
Q Consensus       220 i~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-----~~~~~~~g~~~  287 (450)
                      +++|+||+++++...       .....+|+++  ++|.+++.-.++ |++++++++.+.+....     .+..+..|+..
T Consensus       236 ~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t--~gK~l~gG~~p~-~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pl  312 (422)
T PRK05630        236 ILLIADEIATGFGRTGELFATLAAGVTPDIMC--VGKALTGGFMSF-AATLCTDKVAQLISTPNGGGALMHGPTFMANPL  312 (422)
T ss_pred             CEEEEecceeCCCcCchhhHHHhcCCCCCeee--eechhhcCcccc-ceeeccHHHHHHHhccCCCCccccCCCCcCCHH
Confidence            999999998655321       1223467885  899997421356 88888888887764210     11112333333


Q ss_pred             hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013079          288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR  367 (450)
Q Consensus       288 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~  367 (450)
                      ...++...+..++.. ...++..++.++|.+.|+++. .  +|.+.             +.+|.|.++.+++.....+..
T Consensus       313 a~aaa~aaL~~l~~~-~~~~~~~~~g~~l~~~L~~l~-~--~~~v~-------------~vRg~Gl~~~ie~~~~~~~~~  375 (422)
T PRK05630        313 ACAVAHASLEIIETG-MWRKQVKRIEAELIAGLSPLA-H--LPGVA-------------DVRVLGAIGVVEMEQPVDMEE  375 (422)
T ss_pred             HHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHhh-c--CCCee-------------eeeccccEEEEEECCcccHHH
Confidence            333333333322211 123345556666766666431 1  22211             234789999999974323445


Q ss_pred             HHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          368 LMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       368 ~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      +...+..   .|++. ..                         .   .+.|||... +.-+++.++.+.++|++.
T Consensus       376 ~~~~~~~---~Gl~~-~~-------------------------~---g~~l~~~Pp-L~it~~~i~~~~~~l~~a  417 (422)
T PRK05630        376 ATQAAVD---HGVWL-RP-------------------------F---GRLVYVMPP-YITTSEQIAQICAALAAA  417 (422)
T ss_pred             HHHHHHH---CCeEE-Ee-------------------------c---CCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence            6655553   23211 10                         0   146888887 655666666666665543

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.61  E-value=9.7e-14  Score=140.68  Aligned_cols=256  Identities=11%  Similarity=0.123  Sum_probs=156.0

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHH-HHHH----
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHA-LLTH----  160 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~-~~~~----  160 (450)
                      ..++...+|.++|+++..  .+.++|++|   |+||+..|++....       +| .+|+.....||+... .+.-    
T Consensus        84 ~~~~~~~~lae~L~~~~p~~~~~v~f~~s---GseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~  160 (429)
T PRK06173         84 FTHEPAVELAQKLLEILPPSLNKIFFADS---GSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPV  160 (429)
T ss_pred             cCCHHHHHHHHHHHhhCCCCcCEEEEeCC---chHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCc
Confidence            456778889999999874  467899999   99999999985431       23 578999999988422 1110    


Q ss_pred             h-CCCccC---eeEEEeCCC-----------CHHHHHHhhh--cCCceEEEEecC-CCCcccccC----HHHHHHHHHhc
Q 013079          161 F-FPRACN---ITTTFVDIS-----------DHEMVNSAIV--QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDK  218 (450)
Q Consensus       161 ~-~~~~~g---~~v~~v~~~-----------d~~~l~~ai~--~~~t~lv~i~~~-~NptG~v~~----l~~I~~la~~~  218 (450)
                      . ....++   ..+.+++..           +++.+++.+.  .+++.+|++|.+ +...|.+.+    +++|.++|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~  240 (429)
T PRK06173        161 TGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY  240 (429)
T ss_pred             hhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc
Confidence            0 000000   012233321           3566777773  257889999996 888887743    88999999999


Q ss_pred             CCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh----hhhhhccCCCc
Q 013079          219 GVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH----QGALMLLGPTM  287 (450)
Q Consensus       219 gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~----~~~~~~~g~~~  287 (450)
                      |+++|+||+++++..       .-.....|+++  ++|.+++.-.++ +.++.++++.+.+....    .+..+..++.+
T Consensus       241 g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~--~gK~l~gG~~p~-~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~  317 (429)
T PRK06173        241 GVLLIFDEIATGFGRTGKLFALEHAGVVPDIMC--IGKALTGGYLTL-SATITTEAIAQTICSGEAKCFMHGPTFMANPL  317 (429)
T ss_pred             CCeEEecchhcCCCcCCcchHHHhcCCCCCEEE--eehhhhCCcccc-ceEEecHHHHHHHhcCCCCccccCCCCCcCHH
Confidence            999999999855532       11223478887  899997422356 77778888887764211    11111223333


Q ss_pred             hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH
Q 013079          288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR  367 (450)
Q Consensus       288 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~  367 (450)
                      ...++...++.++.. ...++..++.++|.+.|++.. .  +|.+.             +.+|.|.++.+++.....+..
T Consensus       318 ~~aaa~a~l~~i~~~-~~~~~~~~~g~~l~~~L~~~~-~--~~~v~-------------~vRg~Gl~~~iel~~~~~~~~  380 (429)
T PRK06173        318 ACAIAAESIRLLLES-PWQQNIQRIEAQLKQELAPAA-E--FDSVA-------------EVRVLGAIGVVEMKEPVNMAT  380 (429)
T ss_pred             HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhh-c--CCCee-------------eeeccceEEEEEeCCcccHHH
Confidence            333333332222211 124455666777777777531 1  12111             223678899999985433556


Q ss_pred             HHHHhhc
Q 013079          368 LMNYLQN  374 (450)
Q Consensus       368 ~~~~l~~  374 (450)
                      +.+.+..
T Consensus       381 i~~~l~e  387 (429)
T PRK06173        381 LQPRFVE  387 (429)
T ss_pred             HHHHHHH
Confidence            6666654

>PRK07036 hypothetical protein; Provisional

Probab=99.61  E-value=1.1e-13  Score=141.77  Aligned_cols=241  Identities=13%  Similarity=0.174  Sum_probs=149.3

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc------c-C-CCEEEEeCCCchhHHHHHHHhCCC-
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC------S-S-GGHVVAARTLYGGTHALLTHFFPR-  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~------~-~-gd~Vi~~~~~y~~~~~~~~~~~~~-  164 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..|++...      . + ..+|+.....||+........... 
T Consensus        92 ~~~~~~~~lae~L~~~~p~~~~~v~f~~s---GseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~  168 (466)
T PRK07036         92 MTNAPAAELAAKLAELAPGDLNHVFLTTG---GSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKA  168 (466)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCC---chHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCC
Confidence            457778889999998874  357899999   9999999998542      1 2 257888888898865332111000 


Q ss_pred             ----ccC---eeEEEeCCCC-----------------HHHHHHhhh---cCCceEEEEecCCCCcccccC----HHHHHH
Q 013079          165 ----ACN---ITTTFVDISD-----------------HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSR  213 (450)
Q Consensus       165 ----~~g---~~v~~v~~~d-----------------~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~I~~  213 (450)
                          .++   ..+.+++.++                 ++.+++.+.   .+++.+|++|.++...|.+.|    +++|.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~  248 (466)
T PRK07036        169 ADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMRE  248 (466)
T ss_pred             cccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHH
Confidence                000   1122222211                 233445442   256889999999988898876    999999


Q ss_pred             HHHhcCCEEEEeCCCCCCCC-------C-ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHH------hhh
Q 013079          214 LAHDKGVTVVVDNTFSPLVL-------S-PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDL------HQG  278 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~-------~-~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~------~~~  278 (450)
                      +|++||+++|+||+++++..       . .....+|+++  ++|.+++ | .++ |.+++++++.+.+...      ..+
T Consensus       249 lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt--~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~~~~~  324 (466)
T PRK07036        249 ICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIIT--FAKGLTS-GYQPL-GAVIISERLLDVISGPNAKGNVFTH  324 (466)
T ss_pred             HHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEE--Ecccccc-Ccccc-EEEEEcHHHHHHHhcccCcCccccc
Confidence            99999999999999865521       1 1233578887  8999985 5 467 7777888888776531      011


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      ..+..|+.+...++...+..++. +...++..+..++|.+.|+++. +  +|...             +.+|.|.++.++
T Consensus       325 ~~T~~gnpl~~aaa~a~Le~i~~-~~l~~~~~~~g~~l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~~ve  387 (466)
T PRK07036        325 GFTYSGHPVACAAALKNIEIMER-EGLCEHVREVGPYFEERLASLR-E--LPLVG-------------DVRGDHLMACVE  387 (466)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhc-c--CCCEE-------------EEEeeceEEEEE
Confidence            11233444443333333322211 1233445566666777776531 1  12100             334789999999


Q ss_pred             eC
Q 013079          359 ME  360 (450)
Q Consensus       359 l~  360 (450)
                      |.
T Consensus       388 ~~  389 (466)
T PRK07036        388 CV  389 (466)
T ss_pred             Ec
Confidence            85

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.60  E-value=4.7e-13  Score=137.00  Aligned_cols=172  Identities=15%  Similarity=0.198  Sum_probs=117.9

Q ss_pred             CCChhHHHHHHHHHHHhCC-------CeEEEecChHHHHHHHHHHHHHhcc-------C-CCEEEEeCCCchhHHHHHHH
Q 013079           96 HFNPTVLNLSRQMAALEGT-------EAAYCTASDKAGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTH  160 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~-------~~~~~tsg~~~gt~ai~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~  160 (450)
                      ..++...++.++|+++...       +.++|++|   |+||+..|++....       + ..+||.....||+.......
T Consensus       104 ~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~s---GSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals  180 (472)
T PRK08742        104 FTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADN---GSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALA  180 (472)
T ss_pred             cCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCC---chHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhh
Confidence            4467788899999988742       57899999   99999999986421       2 25799999999886533211


Q ss_pred             hCC-----CccC---eeEEEeCCC-----------------CHHHHHHhhh--cCCceEEEEec-CCCCcccccC----H
Q 013079          161 FFP-----RACN---ITTTFVDIS-----------------DHEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----I  208 (450)
Q Consensus       161 ~~~-----~~~g---~~v~~v~~~-----------------d~~~l~~ai~--~~~t~lv~i~~-~~NptG~v~~----l  208 (450)
                      ...     ..++   ..+.+++..                 +++.+++.+.  .+++.+|++|. +++..|.+.+    +
T Consensus       181 ~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl  260 (472)
T PRK08742        181 VGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYL  260 (472)
T ss_pred             ccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHH
Confidence            100     0000   012223221                 2456666662  25788999998 5777887653    8


Q ss_pred             HHHHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH
Q 013079          209 PELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM  273 (450)
Q Consensus       209 ~~I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~  273 (450)
                      ++|.++|+++|+++|.||+++++..       ......+|+++  ++|.+++.-.++ |.++.++++++.+.
T Consensus       261 ~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~--~gKgl~gG~~Pl-aav~~~~ei~~~~~  329 (472)
T PRK08742        261 RRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLC--LSKGLTGGFLPL-SAVLATQQLYDAFL  329 (472)
T ss_pred             HHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEE--EcccccCCCCCc-ceeeccHHHHHHhh
Confidence            8999999999999999999866632       11233578888  899998532477 77788888877664

>PRK07483 hypothetical protein; Provisional

Probab=99.59  E-value=4.4e-13  Score=136.55  Aligned_cols=240  Identities=17%  Similarity=0.203  Sum_probs=147.4

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHh----
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHF----  161 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~----  161 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..|++....       +| .+|+.....||+........    
T Consensus        70 ~~~~~~~~lae~L~~~~p~~~~~v~f~~s---GsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~  146 (443)
T PRK07483         70 FTTEPAEALADRLVAAAPAGLEHVYFVSG---GSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNA  146 (443)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEcCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCc
Confidence            346778889999999864  468999999   99999999985421       23 47888888888864322110    


Q ss_pred             ------CCCccCeeEEEeCCC----C--------------HHHHHHhhh---cCCceEEEEecCCC-CcccccC----HH
Q 013079          162 ------FPRACNITTTFVDIS----D--------------HEMVNSAIV---QGRTKVLYFESISN-PTLAVAN----IP  209 (450)
Q Consensus       162 ------~~~~~g~~v~~v~~~----d--------------~~~l~~ai~---~~~t~lv~i~~~~N-ptG~v~~----l~  209 (450)
                            .+...+  +..++..    +              ++++++++.   .+++.+|++|.++. ..|.+.+    ++
T Consensus       147 ~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~  224 (443)
T PRK07483        147 WRREPFAPLLIE--AHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFK  224 (443)
T ss_pred             ccccccCCCCCC--CEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHH
Confidence                  111011  2222211    1              256666552   25688999999886 3566654    89


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCcc-ceEEEEEcCHHHHHHHHHHh---hh
Q 013079          210 ELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLH---QG  278 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~-~igG~l~~~~~~~~~l~~~~---~~  278 (450)
                      +|.++|++||+++|+||+++++..       .-..+.+|+++  ++|.+++ |. ++ |.++.++++.+.+....   .+
T Consensus       225 ~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~g-G~~Pi-~av~~~~~i~~~~~~~~~~~~h  300 (443)
T PRK07483        225 RIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVT--IAKGLGA-GYQPI-GAVLASDRIYDAIADGSGFFQH  300 (443)
T ss_pred             HHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeee--ehhhhcc-Ccccc-EEEEEcHHHHHHHhcCCCcccc
Confidence            999999999999999999866632       12233578888  8999985 54 77 77788888877764311   11


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      ..+..|+.+...++...+..++. +...++..+..++|.+.|++.-.+  +|...             +.+|.|.++.++
T Consensus       301 ~~T~~gnpl~~aaa~a~l~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~i~-------------~vRG~Glm~gie  364 (443)
T PRK07483        301 GHTYLGHATACAAALAVQRVIAE-DGLLANVRARGEQLRARLRERLGQ--HPHVG-------------DIRGRGLFVGVE  364 (443)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHhc--CCCee-------------eEeecccEEEEE
Confidence            22344455444444443332221 112334455556666666542111  11100             234789999999


Q ss_pred             eC
Q 013079          359 ME  360 (450)
Q Consensus       359 l~  360 (450)
                      +.
T Consensus       365 ~~  366 (443)
T PRK07483        365 LV  366 (443)
T ss_pred             Ee
Confidence            84

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.59  E-value=2.5e-13  Score=138.20  Aligned_cols=289  Identities=13%  Similarity=0.170  Sum_probs=166.4

Q ss_pred             CCChhHHHHHHHHHHHh---CCCeEEEecChHHHHHHHHHHHHHhcc--------C------CCEEEEeCCCchhHHHHH
Q 013079           96 HFNPTVLNLSRQMAALE---GTEAAYCTASDKAGMSAISSVLMQLCS--------S------GGHVVAARTLYGGTHALL  158 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~---g~~~~~~tsg~~~gt~ai~~al~~l~~--------~------gd~Vi~~~~~y~~~~~~~  158 (450)
                      ...+...++.++|+++.   +.+.++|++|   |+||+..|++....        .      +.+|+.....||+.....
T Consensus        82 ~~~~~~~~l~~~l~~~~~~~~~~~v~f~~s---GsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~a  158 (431)
T TIGR03251        82 VYTVAMARFVDTFARVLGDPALPHLFFIEG---GALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYT  158 (431)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCcCEEEEeCC---cHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhh
Confidence            34667777888888875   2367899999   99999999985421        1      367999999998865332


Q ss_pred             HHhCC---CccC---------eeEEEe--CC-------------CCHHHHHHhhh--cCCceEEEEecCCCCccccc---
Q 013079          159 THFFP---RACN---------ITTTFV--DI-------------SDHEMVNSAIV--QGRTKVLYFESISNPTLAVA---  206 (450)
Q Consensus       159 ~~~~~---~~~g---------~~v~~v--~~-------------~d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~---  206 (450)
                      .....   ...+         +...+.  +.             .+++++++.+.  .+++.+|++|.++...|.+.   
T Consensus       159 ls~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~  238 (431)
T TIGR03251       159 LSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRP  238 (431)
T ss_pred             hhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCH
Confidence            11100   0000         000000  00             12344555552  35789999999999889875   


Q ss_pred             -CHHHHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCH--HHHHHHHHHh
Q 013079          207 -NIPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPA--NLVNSMMDLH  276 (450)
Q Consensus       207 -~l~~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~--~~~~~l~~~~  276 (450)
                       .+++|.++|++||+++|+||+++++...       ...+.+|+++  ++|.+  +   ++|++.+++  ++........
T Consensus       239 ~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~--~gK~~--~---~~g~~~~~~i~~~~~~~~~~~  311 (431)
T TIGR03251       239 EFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA--FGKKT--Q---VCGIMAGRRVDEVADNVFAVP  311 (431)
T ss_pred             HHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEE--ecccC--c---cceEEecchHHHhhhhcccCc
Confidence             3899999999999999999999666432       2234578887  78876  2   346666543  2221111100


Q ss_pred             -hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          277 -QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       277 -~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                       ....+..|+.+...++...+..++.. ...++..++.+++.+.|+++..+  +|.+..            +.+|.|.++
T Consensus       312 ~~~~~T~~gnpl~~aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~~i~------------~vrg~G~~~  376 (431)
T TIGR03251       312 SRLNSTWGGNLVDMVRATRILEIIEEE-RLVDNARVQGAHLLARLHELAAE--FPHLVS------------NPRGRGLMC  376 (431)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHh--Ccccee------------cccccceeE
Confidence             11122334433333333333222110 12233344445555555442110  111000            123678899


Q ss_pred             EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      .++++..+....+...+..   .|++. ...                           ....|||++. ...+++.++.+
T Consensus       377 ~i~~~~~~~~~~~~~~l~~---~Gvl~-~~~---------------------------g~~~lr~~P~-l~~t~~eid~~  424 (431)
T TIGR03251       377 AFDLPSTADRDEVIRQLYR---EGVLL-LGC---------------------------GERSIRFRPP-LTVTREEIDAA  424 (431)
T ss_pred             EEEeCCHHHHHHHHHHHHh---CCeEE-ecC---------------------------CCCeEEEECC-ccCCHHHHHHH
Confidence            9999865555667777664   23221 100                           0256999999 88888888888


Q ss_pred             HHHHHH
Q 013079          436 EKALSR  441 (450)
Q Consensus       436 ~~al~~  441 (450)
                      .++|++
T Consensus       425 l~~l~~  430 (431)
T TIGR03251       425 IDAIRR  430 (431)
T ss_pred             HHHHHh
Confidence            888765

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.59  E-value=1.7e-13  Score=140.31  Aligned_cols=241  Identities=11%  Similarity=0.116  Sum_probs=149.9

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHhCCC--
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR--  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~--  164 (450)
                      .++...++.++|+++...  +.++|++|   |+||+..|++....       +| .+||.....||+...........  
T Consensus        97 ~~~~~~~lae~L~~~~p~~~~~v~f~~S---GseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~  173 (460)
T PRK06916         97 ANVPSILLAEKLIEVVPEGLKKVFYSDS---GATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDL  173 (460)
T ss_pred             CCHHHHHHHHHHHHhCCCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcc
Confidence            467778899999998753  57899999   99999999985431       33 57899999998854332111000  


Q ss_pred             ---ccC---eeEEEeCCC-----------------CHHHHHHhhh--cCCceEEEEec-CCCCcccccC----HHHHHHH
Q 013079          165 ---ACN---ITTTFVDIS-----------------DHEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSRL  214 (450)
Q Consensus       165 ---~~g---~~v~~v~~~-----------------d~~~l~~ai~--~~~t~lv~i~~-~~NptG~v~~----l~~I~~l  214 (450)
                         .++   ..+..++..                 +++++++.+.  .+++.+|++|. ++...|.+.+    +++|.++
T Consensus       174 ~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~l  253 (460)
T PRK06916        174 FHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNL  253 (460)
T ss_pred             cccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHH
Confidence               000   011222111                 3456666662  25789999999 6888887753    8899999


Q ss_pred             HHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh------hhhhh
Q 013079          215 AHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH------QGALM  281 (450)
Q Consensus       215 a~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~------~~~~~  281 (450)
                      |+++|+++|+||+++++..       ....+.+|+++  ++|.+++.-.++ |++++++++.+.+....      .+..+
T Consensus       254 c~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi-~av~~~~ei~~~~~~~~~~~~~~~~~~T  330 (460)
T PRK06916        254 CTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMT--AGKGLTGGYLPI-AITVTTDEIYNAFYGDYEEQKTFFHGHS  330 (460)
T ss_pred             HHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeee--eehhhhcCcccc-ceeeecHHHHHHhhccccccCccccCCC
Confidence            9999999999999865531       12233578887  899998532478 88888888877664210      01122


Q ss_pred             ccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          282 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       282 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ..|+.+...++...+..++. ....++..++.+++.+.|+++. +  +|.+.             +.+|.|.++.+++.
T Consensus       331 ~~gnpl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~l~~l~-~--~~~v~-------------~vrG~Glm~giel~  392 (460)
T PRK06916        331 YTGNPLGCAVALANLELYEK-TNLIEQVARKTEYVATQLEDLF-A--LKHVG-------------DIRQLGLMVGIELV  392 (460)
T ss_pred             CCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHhh-c--CCCeE-------------EeecCCceeeEEee
Confidence            33444443333333322211 1233455666667777776642 1  12111             23478999999885

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.59  E-value=3.6e-13  Score=125.02  Aligned_cols=240  Identities=17%  Similarity=0.193  Sum_probs=165.8

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc------c--CCC--EEEEeCCCchhH-H---------HH
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC------S--SGG--HVVAARTLYGGT-H---------AL  157 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~------~--~gd--~Vi~~~~~y~~~-~---------~~  157 (450)
                      +...-++++.+++++|.+.++-++.   |.||...+++...      +  |.+  .|+.....|++- .         ..
T Consensus       100 nd~~~~f~~~vt~lf~~~kvlpmnT---GaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds  176 (427)
T KOG1402|consen  100 NDVLGEFAEYVTKLFGYDKVLPMNT---GAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDS  176 (427)
T ss_pred             hhhHHHHHHHHHHhcCcceeeeccc---chhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcch
Confidence            4456789999999999999999999   9999999997542      1  222  344444444431 1         12


Q ss_pred             HHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          158 LTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       158 ~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                      +..+.+- ....+..++..|.++|+.++.+++.+++.+|.++.+.|.+.|    ++++.++|++|++++|.||+|+++..
T Consensus       177 ~~~fgp~-~P~~~~~v~Y~d~eale~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~R  255 (427)
T KOG1402|consen  177 WDGFGPF-LPGVVDKVPYGDAEALEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLAR  255 (427)
T ss_pred             hhccCCC-CCCcceeeccCCHHHHHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccc
Confidence            2344442 222367778889999999997788999999999999999965    89999999999999999999966643


Q ss_pred             -------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH
Q 013079          234 -------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM  306 (450)
Q Consensus       234 -------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~  306 (450)
                             +......|+++  +.|.+++.-.++ ..+.++++++..+..... ..+..|+++....+.+++.-+.+ +...
T Consensus       256 TGk~la~d~env~PDivi--lgKalSGG~~Pv-savl~~~~im~~~~pgeH-gsTyggNpLg~~vaiAalevi~e-ekL~  330 (427)
T KOG1402|consen  256 TGKLLACDYENVRPDIVI--LGKALSGGVYPV-SAVLADDDIMLNIKPGEH-GSTYGGNPLGCAVAIAALEVIVE-EKLV  330 (427)
T ss_pred             cCcEEEeehhhcCCCeEE--EeccccCCeeee-EEEEecHHHHhccCCCcc-ccccCCChHHHHHHHHHHHHHHH-HHHH
Confidence                   23344679999  999999877777 556677777766654433 34456666666666554432221 2233


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ++...+...|..+|.+++.++  |+            ++...+|.|.+..+.+.
T Consensus       331 era~~lG~~l~~~L~~l~~~~--p~------------~v~~VRGrGl~~ai~i~  370 (427)
T KOG1402|consen  331 ERAAKLGEILRDQLNKLQKKF--PH------------VVKEVRGRGLLNAIVIN  370 (427)
T ss_pred             HHHHHHHHHHHHHHHhccccc--cc------------hhheeeccceEEEEEec
Confidence            445566677778887765432  22            11234578888888876

>PRK07480 putative aminotransferase; Validated

Probab=99.58  E-value=5.4e-13  Score=136.29  Aligned_cols=242  Identities=14%  Similarity=0.198  Sum_probs=146.7

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHh----
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHF----  161 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~----  161 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..|++....       +| .+||.....||+........    
T Consensus        91 ~~~~~~~~lae~L~~~~p~~~~~v~f~~S---GseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~  167 (456)
T PRK07480         91 TTHPPAIELAAKLAEVAPPGFNHVFFTNS---GSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMK  167 (456)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCCh
Confidence            457888899999999884  367899999   99999999975421       23 46888888888854221000    


Q ss_pred             -CCCccC---eeEEEeCCC---------------C--HHHHHHhhh---cCCceEEEEecCCCCcccccC----HHHHHH
Q 013079          162 -FPRACN---ITTTFVDIS---------------D--HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSR  213 (450)
Q Consensus       162 -~~~~~g---~~v~~v~~~---------------d--~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~I~~  213 (450)
                       .....+   ..+..++.+               +  ++.+++.+.   .+++.+|++|.++...|.+.+    +++|.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~  247 (456)
T PRK07480        168 YMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQR  247 (456)
T ss_pred             hhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHH
Confidence             000011   012222211               1  255554442   257889999999988888765    999999


Q ss_pred             HHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH-Hh--hhhhhcc
Q 013079          214 LAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LH--QGALMLL  283 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~~--~~~~~~~  283 (450)
                      +|++||+++|+||+++++..       .-....+|+++  ++|.+++.-.++ |.+++++++.+.+.. ..  .+..+..
T Consensus       248 lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi-~av~~~~~i~~~~~~~~~~~~~~~T~~  324 (456)
T PRK07480        248 ICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMT--IAKGLTSGYIPM-GAVGVGDRVAEVLIEEGGEFNHGFTYS  324 (456)
T ss_pred             HHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeee--eehhhccCCccc-eEEEEcHHHHHHHhcCCCCcccCCCCC
Confidence            99999999999999865531       11223468876  899999532367 777778888776631 11  1122344


Q ss_pred             CCCchHHHHHHHHccCCcHHHHHHHH-HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          284 GPTMNPKVAFELSERIPHLGLRMKEH-CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       284 g~~~~~~~a~~~~~~~~~l~~~~~~~-~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      |+.+...++...+..++. +...++. .+..++|.+.|++.. +  +|...             +.+|.|.++.+++.
T Consensus       325 gnpl~~Aaa~a~L~~l~~-~~l~~~~~~~~g~~l~~~l~~l~-~--~~~i~-------------~vrG~Glm~gie~~  385 (456)
T PRK07480        325 GHPVAAAVALANLRILRD-EGIVERVRDDTGPYLQKRLRELA-D--HPLVG-------------EVRGVGLVGAIELV  385 (456)
T ss_pred             cCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhh-c--CCCee-------------eEEeecceEEEEEe
Confidence            444444444333332221 1122333 244566666665531 1  12110             23478999999984

>PRK06148 hypothetical protein; Provisional

Probab=99.58  E-value=4.8e-13  Score=148.58  Aligned_cols=257  Identities=16%  Similarity=0.154  Sum_probs=156.8

Q ss_pred             CCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHh----CCCcc
Q 013079           95 RHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF----FPRAC  166 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~----~~~~~  166 (450)
                      ++.++...++.++|+++...  +.++|++|   |+||+.+|++...  ....+||+....||+........    ..+..
T Consensus       659 ~~~~~~~~~lAe~L~~~~p~~~~~v~f~nS---GsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~  735 (1013)
T PRK06148        659 RYLHDAIVAYAERLTATLPDGLTVAFFVNS---GSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKG  735 (1013)
T ss_pred             CcCCHHHHHHHHHHHHhCCCCcCEEEEeCC---cHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccC
Confidence            45677888899999988753  57899999   9999999998542  22357899898888864321110    00000


Q ss_pred             C----eeEEEe--------CCC--C-------HHHHHHhhh-----cCCceEEEEecCCCCcccccC----HHHHHHHHH
Q 013079          167 N----ITTTFV--------DIS--D-------HEMVNSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRLAH  216 (450)
Q Consensus       167 g----~~v~~v--------~~~--d-------~~~l~~ai~-----~~~t~lv~i~~~~NptG~v~~----l~~I~~la~  216 (450)
                      +    ..+..+        +..  +       .+.+++.+.     .+++.+|++|.+....|.+.+    +++|.++|+
T Consensus       736 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~  815 (1013)
T PRK06148        736 GKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVR  815 (1013)
T ss_pred             CCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHH
Confidence            1    011111        111  1       134554442     146889999999988888876    999999999


Q ss_pred             hcCCEEEEeCCCCCCCCC--------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCch
Q 013079          217 DKGVTVVVDNTFSPLVLS--------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN  288 (450)
Q Consensus       217 ~~gi~livD~~~~~~~~~--------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~  288 (450)
                      ++|+++|.||+++++...        -.....|+++  ++|.+|+ |.++ |.+++++++.+.+........++.|+.++
T Consensus       816 ~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt--~gK~lgg-G~Pl-gav~~~~ei~~~~~~g~~~~~Tf~gnpla  891 (1013)
T PRK06148        816 AAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVT--MGKPIGN-GHPM-GAVVTTREIADSFDNGMEYFNTFGGNPVS  891 (1013)
T ss_pred             HhCCEEEEEecccCCCCCCCcchhhhhcCCCcceee--ecccccC-Ccce-EEEEEcHHHHhhccCCCccccCCCCCHHH
Confidence            999999999999655321        1223478877  8999995 6888 77888888887764321112234445554


Q ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------
Q 013079          289 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------  361 (450)
Q Consensus       289 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------  361 (450)
                      ..++...+..++. +...++..+..++|.+.|+++..+....+               +.+|.|.++.+++..       
T Consensus       892 ~aaa~a~L~~i~~-e~l~~~~~~~G~~l~~~L~~l~~~~~~i~---------------~VrG~Gl~~gvel~~~~~~~~~  955 (1013)
T PRK06148        892 CAIGLAVLDIIED-EDLQRNALEIGNYLLAGLRELQDRFDIIG---------------DVRGMGLFLGIELVTDRKTKAP  955 (1013)
T ss_pred             HHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhCCCce---------------EEeeeceEEEEEecCCccccCc
Confidence            4444443332221 12233445555666666655311110111               234789999999852       


Q ss_pred             -HHHHHHHHHHhhc
Q 013079          362 -EEKANRLMNYLQN  374 (450)
Q Consensus       362 -~~~~~~~~~~l~~  374 (450)
                       .+.+..+++.+..
T Consensus       956 ~~~~~~~i~~~~~~  969 (1013)
T PRK06148        956 ATAIARYVKNGARE  969 (1013)
T ss_pred             cHHHHHHHHHHHHh
Confidence             1224456666654

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.58  E-value=7e-13  Score=134.62  Aligned_cols=291  Identities=11%  Similarity=0.110  Sum_probs=175.9

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhcc-------C-CCEEEEeCCCchhHHHHHHHhCC--
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTHFFP--  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~~~~--  163 (450)
                      ..++...++.+.|+++.+.  +.++|+++   |++|+..+++....       + ..+||+....|++....+.....  
T Consensus        85 ~~~~~~~~la~~l~~~~~~~~~~v~f~~s---GseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~  161 (427)
T TIGR00508        85 FTHKPAIELCQKLVKMTPNALDCVFLADS---GSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPE  161 (427)
T ss_pred             cCCHHHHHHHHHHHhhCCCCCCEEEEeCC---cHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCc
Confidence            3456778888899988753  57899999   99999999985431       2 25799999999886433211100  


Q ss_pred             ----C-ccC-e-eEEEeC-----------CCCHHHHHHhhhc--CCceEEEEecC-CCCcccc----cCHHHHHHHHHhc
Q 013079          164 ----R-ACN-I-TTTFVD-----------ISDHEMVNSAIVQ--GRTKVLYFESI-SNPTLAV----ANIPELSRLAHDK  218 (450)
Q Consensus       164 ----~-~~g-~-~v~~v~-----------~~d~~~l~~ai~~--~~t~lv~i~~~-~NptG~v----~~l~~I~~la~~~  218 (450)
                          . ..+ . .+..++           ..|++++++.+..  +++++|++|++ ++..|.+    .++++|.++|+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~  241 (427)
T TIGR00508       162 NSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQY  241 (427)
T ss_pred             ccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc
Confidence                0 000 0 011111           0145667777632  46789999986 6666654    3589999999999


Q ss_pred             CCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCcc-ceEEEEEcCHHHHHHHHHHhh----hhhhccCCC
Q 013079          219 GVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQ----GALMLLGPT  286 (450)
Q Consensus       219 gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~-~igG~l~~~~~~~~~l~~~~~----~~~~~~g~~  286 (450)
                      |+++|+||++.++...       -..+..|+++  ++|.++ .|. ++ +.++.++++.+.+.....    ...+..++.
T Consensus       242 ~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~--~gK~l~-gG~~p~-~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p  317 (427)
T TIGR00508       242 DILLIADEIATGFGRTGKLFACEHAGVVPDILC--VGKALT-GGYMTL-SATVTTDKVAQTISSGEAGCFMHGPTFMGNP  317 (427)
T ss_pred             CCEEEEeccccCCCcCCccchhhhcCCCCCEEE--echhhh-cCcccc-eEEEEcHHHHHHHhcCCCCccccCCCCCcCH
Confidence            9999999998545321       1223578777  899997 453 55 778888888887753211    111123333


Q ss_pred             chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHH
Q 013079          287 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN  366 (450)
Q Consensus       287 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~  366 (450)
                      +...++...+..++.. ...++..++.++|.+.|+++..   +|...             +.+|.|.++.+.+.+.....
T Consensus       318 ~~~aaa~a~l~~l~~~-~~~~~~~~~~~~l~~~L~~l~~---~~~i~-------------~vrg~G~~~~i~~~~~~~~~  380 (427)
T TIGR00508       318 LACAVAEASLAILLEG-EWQKQVSAIENQLKRELSPLRK---NPVVK-------------DVRVLGAIGVVEMYKPVNVE  380 (427)
T ss_pred             HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhhc---CCCEE-------------eEeccccEEEEEECCccCHH
Confidence            3333333333322211 2245566677778888876532   12111             12367889999997443355


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .+...+...   | +.+..                            ....+|++.. ...+++.++.+.+++++.-
T Consensus       381 ~~~~~l~~~---G-v~~~~----------------------------~~~~l~~~pp-l~~t~~~id~~~~~l~~~l  424 (427)
T TIGR00508       381 ELQKKFVEQ---G-VWIRP----------------------------FGKLIYVMPP-YIITTEQLQKLTAALIEAL  424 (427)
T ss_pred             HHHHHHHHC---C-eEEEe----------------------------cCCEEEEECC-CCCCHHHHHHHHHHHHHHH
Confidence            666666542   3 22110                            0135888888 7666777777777766543

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK06917 hypothetical protein; Provisional

Probab=99.58  E-value=7e-13  Score=135.22  Aligned_cols=305  Identities=13%  Similarity=0.150  Sum_probs=175.9

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc-------cCC-CEEEEeCCCchhHHHHHHHhCCC-
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC-------SSG-GHVVAARTLYGGTHALLTHFFPR-  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~-------~~g-d~Vi~~~~~y~~~~~~~~~~~~~-  164 (450)
                      ..++...++.++|+++...  +.++|++|   |+||+..|++...       .+| .+|+.....||+........... 
T Consensus        71 ~~~~~~~~lae~L~~~~p~~~~~v~f~~s---GsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~  147 (447)
T PRK06917         71 FTSEPAEKLAKKLSDLSPGDLNWSFFVNS---GSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHP  147 (447)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCEEEEeCC---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCc
Confidence            4567788899999998753  46899999   9999999998652       123 57888888898865432111000 


Q ss_pred             ----ccC---eeEEEeCC-----------------CCHHHHHHhhhc---CCceEEEEecCCCCc-ccccC----HHHHH
Q 013079          165 ----ACN---ITTTFVDI-----------------SDHEMVNSAIVQ---GRTKVLYFESISNPT-LAVAN----IPELS  212 (450)
Q Consensus       165 ----~~g---~~v~~v~~-----------------~d~~~l~~ai~~---~~t~lv~i~~~~Npt-G~v~~----l~~I~  212 (450)
                          .++   ..+..++.                 .+++.+++.+..   +++.+|++|.+.... |.+.+    +++|.
T Consensus       148 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr  227 (447)
T PRK06917        148 LRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIK  227 (447)
T ss_pred             cccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHH
Confidence                000   00111110                 024566666631   468899999987644 45543    88999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCcc-ceEEEEEcCHHHHHHHHHHhh---hhhh
Q 013079          213 RLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGAD-IIAGAVCGPANLVNSMMDLHQ---GALM  281 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~-~igG~l~~~~~~~~~l~~~~~---~~~~  281 (450)
                      ++|+++|+++|+||+++++..       .-.....|+++  ++|.+++ |. ++ |++++++++++.+.....   +..+
T Consensus       228 ~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~--~gK~l~~-G~~Pi-~a~~~~~~i~~~~~~~~~~~~~~~T  303 (447)
T PRK06917        228 EICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMT--LGKGLGA-GYTPI-AATVVSDRVMEPILRGSRSIMSGHT  303 (447)
T ss_pred             HHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEE--eeehhcc-CCcce-EEEEEcHHHHHHHhccCcccccccC
Confidence            999999999999999865531       11233578876  8999984 53 67 777788888877643211   1112


Q ss_pred             ccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          282 LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       282 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      ..|+.+...++...+..++. +...++..++.++|.+.|+++..+...+.               +.+|.|.++.++|..
T Consensus       304 ~~gnpl~~aaa~a~l~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~i~---------------~vrG~Gl~~~ie~~~  367 (447)
T PRK06917        304 LSANPLSAATALAVLEYMEK-HNLPEKAAEKGEYLIKGLQKVQQQSTIIG---------------DVRGKGLLIGVEFVA  367 (447)
T ss_pred             CCCCHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhcCCCEE---------------EEeecceEEEEEEec
Confidence            33444444333333332211 12334555566667677665421110111               234788999999841


Q ss_pred             -----------HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---CCC
Q 013079          362 -----------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---LGT  427 (450)
Q Consensus       362 -----------~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~~~  427 (450)
                                 .+....+...+..   .|++....+.         ..            .|...+.|||+..+   .++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~---~Gvl~~~~~~---------~~------------~g~~~~~i~l~Ppl~it~~e  423 (447)
T PRK06917        368 DKKTKQPFSKSQAVASELISVAAK---NGLLLYPAVA---------GQ------------DGKEGDAVIIAPPMTITYSE  423 (447)
T ss_pred             cCCcCCCCcchhHHHHHHHHHHHh---CCcEEEeccc---------cc------------CCCCCCEEEEECCCcCCHHH
Confidence                       1224455555543   2322110000         00            01113678888661   255


Q ss_pred             HHHHHHHHHHHHHHhhhcCC
Q 013079          428 LDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       428 ~~~~i~~l~~al~~~~~~~~  447 (450)
                      +++.++.|.++|.++.++++
T Consensus       424 id~~~~~l~~~l~~~~~~~~  443 (447)
T PRK06917        424 LDELLSIFAKSVEEMMQKGG  443 (447)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            66666777777777655443

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.57  E-value=4.6e-13  Score=132.53  Aligned_cols=296  Identities=13%  Similarity=0.156  Sum_probs=178.8

Q ss_pred             ccCCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc-------cCC-CEEEEeCCCchhHHHHH-H-
Q 013079           93 YSRHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC-------SSG-GHVVAARTLYGGTHALL-T-  159 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~-------~~g-d~Vi~~~~~y~~~~~~~-~-  159 (450)
                      ++-...| ..+|.++|+++..   -+.++|++|   |++|+..+++...       ++. .++|+-...||+..-.. . 
T Consensus        82 ~~~t~~P-a~~LA~~L~~~aP~~~l~~vFf~~s---GSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv  157 (449)
T COG0161          82 GGFTHEP-AIELAEKLAELAPEGGLDHVFFTDS---GSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSV  157 (449)
T ss_pred             cccCCch-HHHHHHHHHHhCCCCCccEEEEeCC---chHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheec
Confidence            4444455 8999999999987   467899999   9999999998543       222 35888888887743221 0 


Q ss_pred             --------HhCCCccCeeEEEeCCC-----------C------HHHHHHhhhc---CCceEEEEecCCCC-cccccC---
Q 013079          160 --------HFFPRACNITTTFVDIS-----------D------HEMVNSAIVQ---GRTKVLYFESISNP-TLAVAN---  207 (450)
Q Consensus       160 --------~~~~~~~g~~v~~v~~~-----------d------~~~l~~ai~~---~~t~lv~i~~~~Np-tG~v~~---  207 (450)
                              .+... .-..+..++.+           +      .++|++.|..   ++..++++|.+..- .|.+.|   
T Consensus       158 ~g~~~~~~~~~~~-ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~  236 (449)
T COG0161         158 GGPVALRHAFYDP-LLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPG  236 (449)
T ss_pred             cCchhhhhhhccc-cccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChH
Confidence                    11100 00111122211           1      4566666633   56788999998777 666654   


Q ss_pred             -HHHHHHHHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--
Q 013079          208 -IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--  277 (450)
Q Consensus       208 -l~~I~~la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--  277 (450)
                       ++++.++|++|||++|+||+.++|..       .-...-.|+++  ++|.+.+.-.++ |.++.++++.+.+.....  
T Consensus       237 Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~--~aKGLT~GY~Pl-~a~l~~~~I~~~~~~~~~~~  313 (449)
T COG0161         237 YLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILC--LAKGLTGGYLPL-SAVLTSDRIYEAFSDGDAGA  313 (449)
T ss_pred             HHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeee--ecccccccchhh-HhHhhhHHHHHHHhcccCCe
Confidence             88999999999999999999766642       11223478888  999999877777 777777888888765311  


Q ss_pred             --hhhhccCCCchHHHHHHHHccCCcHH--HHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          278 --GALMLLGPTMNPKVAFELSERIPHLG--LRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       278 --~~~~~~g~~~~~~~a~~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                        +..+.+|+.   .+|+.++..++-++  ..+++..+...++.+.|++. ..   .|..             .+.++.|
T Consensus       314 f~HG~TYsghP---lacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~---~p~V-------------gdVR~~G  374 (449)
T COG0161         314 FMHGHTYSGNP---LACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALAD---HPLV-------------GDVRGLG  374 (449)
T ss_pred             eccCCccccCH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccc---CCcE-------------EEeeccc
Confidence              112233333   33333333333322  23344456666777777652 11   0111             1345788


Q ss_pred             cEEEEEeCCHH---------HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079          353 GLLCLDMETEE---------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG  423 (450)
Q Consensus       353 ~~~~~~l~~~~---------~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g  423 (450)
                      .+..+++....         ...++...+..   .|++.-.+|... .+.+|-+.                        .
T Consensus       375 li~~iElv~d~~t~~~f~~~~~~~~~~~~~e---~Gl~iRp~g~~i-~~~PPlii------------------------t  426 (449)
T COG0161         375 LIGAIELVADKATKTPFEARVGARVRAAALE---RGLLIRPLGDVI-YLMPPLII------------------------T  426 (449)
T ss_pred             eEEEEEEecccccccchhhhHHHHHHHHHHH---CCeEEeecCCEE-EEcCCccC------------------------C
Confidence            89999987221         13445554433   344444454321 11222222                        2


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh
Q 013079          424 YLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       424 ~~~~~~~~i~~l~~al~~~~~  444 (450)
                       .++++++++.+.++|+....
T Consensus       427 -~~eid~l~~~l~~al~~~~~  446 (449)
T COG0161         427 -REEIDELVDALREALDETLA  446 (449)
T ss_pred             -HHHHHHHHHHHHHHHHHHHh
Confidence             57888888888888886643

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.57  E-value=9.4e-13  Score=134.75  Aligned_cols=240  Identities=16%  Similarity=0.172  Sum_probs=144.7

Q ss_pred             CCChhHHHHHHHHHHHhCC-----CeEEEe-cChHHHHHHHHHHHHHhc-cC-CCEEEEeCCCchhHHHHHHHhC----C
Q 013079           96 HFNPTVLNLSRQMAALEGT-----EAAYCT-ASDKAGMSAISSVLMQLC-SS-GGHVVAARTLYGGTHALLTHFF----P  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~-----~~~~~t-sg~~~gt~ai~~al~~l~-~~-gd~Vi~~~~~y~~~~~~~~~~~----~  163 (450)
                      ..++...++.++|+++...     +.++|+ +|   |+||+..|++... .+ ..+||.....||+.........    .
T Consensus       103 ~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~S---GSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~  179 (464)
T PRK06938        103 LTTPVKDQFVQDLFASLPEAFAREAKIQFCGPT---GTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGP  179 (464)
T ss_pred             cCCHHHHHHHHHHHHhCcccccccceEEEeCCC---cHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccc
Confidence            4577778888888887642     246565 79   9999999998542 22 3578888888988653321110    0


Q ss_pred             C-cc-C--eeEEEeCCC-----------------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC----HHHHHH
Q 013079          164 R-AC-N--ITTTFVDIS-----------------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSR  213 (450)
Q Consensus       164 ~-~~-g--~~v~~v~~~-----------------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~----l~~I~~  213 (450)
                      + .+ +  ..+.+++..                 +++.+++.+..     +++.+|++|.++...|.+.+    +++|.+
T Consensus       180 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~  259 (464)
T PRK06938        180 KKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRR  259 (464)
T ss_pred             cccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHH
Confidence            0 00 0  122333321                 25667777732     25889999999888888754    889999


Q ss_pred             HHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCC
Q 013079          214 LAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT  286 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~  286 (450)
                      +|+++|+++|.||+++++..       .-..+.+|+++  ++|.+++ |.++ |.++.++++ +.+... .+..+..|+.
T Consensus       260 lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~--~gKglgg-G~Pl-sAv~~~~~~-~~~~~~-~~~~T~~gnp  333 (464)
T PRK06938        260 ITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVV--LSKAIGG-SLPL-AVVVYREWL-DTWQPG-AHAGTFRGNQ  333 (464)
T ss_pred             HHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEE--eeccccC-CCce-EEEeehhHh-hccCCC-CCCCCCCcCH
Confidence            99999999999999966632       12233578888  8999985 6888 666666553 433211 1122234444


Q ss_pred             chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          287 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       287 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +...++...+..++. +...++..+..++|.+.|+++..+  +|...             +.+|.|.++.+++.
T Consensus       334 la~Aaa~a~L~~l~~-~~l~~~~~~~G~~l~~~L~~l~~~--~~~i~-------------~VrG~Glm~gie~~  391 (464)
T PRK06938        334 MAMAAGSATLRYIKE-HRLAEHAAAMGERLREHLRQLQRD--YPQLG-------------DVRGRGLMLGVEIV  391 (464)
T ss_pred             HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHh--CCCee-------------eeeccceEEEEEec
Confidence            444444333322211 122334455555666666543111  11100             33478999999985

>PRK06149 hypothetical protein; Provisional

Probab=99.57  E-value=8.1e-13  Score=146.65  Aligned_cols=257  Identities=15%  Similarity=0.139  Sum_probs=153.3

Q ss_pred             CCCChhHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHh------CCC
Q 013079           95 RHFNPTVLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHF------FPR  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~------~~~  164 (450)
                      +..++...++.++|+++.  +.+.++|++|   |+||+..|++...  ....+||+....||+........      .+.
T Consensus       620 ~~~~~~~~elae~L~~~~p~~~~~v~f~~S---GsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~  696 (972)
T PRK06149        620 RFHYAAVAEFSERLAALAPDGLDTVFLVNS---GSEANDLAIRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQ  696 (972)
T ss_pred             cccCHHHHHHHHHHHHhCCCCcCEEEEeCC---chHHHHHHHHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCcccccc
Confidence            345677889999999988  3578999999   9999999998431  22357888888888744221000      000


Q ss_pred             ccC---eeEEEeCC----------CC-----HHHHHHhhh-----cCCceEEEEecCCCCcccccC----HHHHHHHHHh
Q 013079          165 ACN---ITTTFVDI----------SD-----HEMVNSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRLAHD  217 (450)
Q Consensus       165 ~~g---~~v~~v~~----------~d-----~~~l~~ai~-----~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~  217 (450)
                      ..+   ..+..++.          .+     .+++++.++     .+++.+|++|.+....|.+.+    +++|.++|++
T Consensus       697 ~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~  776 (972)
T PRK06149        697 ALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRA  776 (972)
T ss_pred             ccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHH
Confidence            000   00111111          11     234333331     246789999999988898887    9999999999


Q ss_pred             cCCEEEEeCCCCCCCCCc--------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH
Q 013079          218 KGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP  289 (450)
Q Consensus       218 ~gi~livD~~~~~~~~~~--------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~  289 (450)
                      ||+++|+||+++++...-        ....+|+++  ++|.+|+ |.++ |++++++++.+.+........+..|+.++.
T Consensus       777 ~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt--~gK~lg~-G~Pl-~av~~~~~i~~~~~~~~~~~sT~~gnP~~~  852 (972)
T PRK06149        777 RGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIIT--MAKGMGN-GHPL-GAVITRREIAEALEAEGYFFSSTGGSPVSC  852 (972)
T ss_pred             cCCEEEEEeehhcCCccCccchhhhhcCCCCCEEE--ecccccC-Ceee-EEEEEcHHHHhhhccCCcccCCCCCCHHHH
Confidence            999999999985553211        123478885  8999994 5777 888888888877653111111123333333


Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------C
Q 013079          290 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------T  361 (450)
Q Consensus       290 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~  361 (450)
                      .++...+..++. +...++..+..++|.+.|+++..+  +|...             +.+|.|.++.+++.        .
T Consensus       853 aaala~L~~i~~-e~l~~~~~~~G~~l~~~L~~l~~~--~~~i~-------------~vrG~Gl~~gvel~~~~~~~~~~  916 (972)
T PRK06149        853 RIGMAVLDVLRE-EKLQENARRVGDHLKARLEALADR--HPLIG-------------AVHGMGLYLGVELVRDRQTLEPA  916 (972)
T ss_pred             HHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCeE-------------EEeecceEEEEEEecCcccCCCC
Confidence            333333322211 112233444456666666553111  11100             23478999999984        1


Q ss_pred             HHHHHHHHHHhhc
Q 013079          362 EEKANRLMNYLQN  374 (450)
Q Consensus       362 ~~~~~~~~~~l~~  374 (450)
                      .+.+..+.+.+..
T Consensus       917 ~~~~~~i~~~l~~  929 (972)
T PRK06149        917 TEETAAICDRLLE  929 (972)
T ss_pred             hHHHHHHHHHHHh
Confidence            2334556666654

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.57  E-value=1.3e-12  Score=133.88  Aligned_cols=241  Identities=15%  Similarity=0.142  Sum_probs=150.8

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------C-CCEEEEeCCCchhHHHHHHHhCCC-
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------S-GGHVVAARTLYGGTHALLTHFFPR-  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~-gd~Vi~~~~~y~~~~~~~~~~~~~-  164 (450)
                      ..++...++.++|+++..  .+.++|++|   |+||+..|++....       + ..+||.....||+........... 
T Consensus        87 ~~~~~~~~lae~L~~~~p~~~~~v~f~~s---GsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~  163 (466)
T PRK07030         87 FSHEPVIELSERLVKITPPGLSRCFYADN---GSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVA  163 (466)
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCC---cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCc
Confidence            456778889999999864  467899999   99999999986421       2 357898998998864332111000 


Q ss_pred             ----ccC---eeEEEeCCC-----------------CHHHHHHhhh--cCCceEEEEec-CCCCcccccC----HHHHHH
Q 013079          165 ----ACN---ITTTFVDIS-----------------DHEMVNSAIV--QGRTKVLYFES-ISNPTLAVAN----IPELSR  213 (450)
Q Consensus       165 ----~~g---~~v~~v~~~-----------------d~~~l~~ai~--~~~t~lv~i~~-~~NptG~v~~----l~~I~~  213 (450)
                          ..+   ..+..++..                 +++++++.+.  .+++.+|++|. ++...|.+.+    +++|.+
T Consensus       164 ~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~  243 (466)
T PRK07030        164 LFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLRE  243 (466)
T ss_pred             cccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHH
Confidence                000   012222211                 2455677663  25788999998 5777787754    889999


Q ss_pred             HHHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHh------hhh
Q 013079          214 LAHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH------QGA  279 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~------~~~  279 (450)
                      +|+++|+++|+||+++++..       ....+.+|+++  ++|.+++ | .++ |.++.++++.+.+....      .+.
T Consensus       244 lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~--~gKgl~g-G~~Pi-~av~~~~ei~~~~~~~~~~~~~~~h~  319 (466)
T PRK07030        244 ACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLC--LSKALTG-GYLPL-AAVLTTDTVYQAFYDDYPTLRAFLHS  319 (466)
T ss_pred             HHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEe--eehhccC-Ccccc-eEEEecHHHHHHHhcccccccccccC
Confidence            99999999999999866632       22233578988  7999995 6 477 88888888887764210      112


Q ss_pred             hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       280 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                      .+..|+.+...++...+..++. +...++..+..++|.+.|+++. +  +|.+.             +.+|.|.++.+++
T Consensus       320 ~T~~gnpla~aaa~a~L~~i~~-~~l~~~~~~~G~~l~~~L~~l~-~--~~~v~-------------~vrG~Gl~~gie~  382 (466)
T PRK07030        320 HSYTGNPLACAAALATLDIFEQ-DNVIENNRALARRMAEATAHLA-D--HPHVA-------------EVRQTGMILAIEM  382 (466)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHh-c--CCCEE-------------EeEeceeEEEEEe
Confidence            2233444443333333322221 1123445556667777776542 1  22111             2347899999998


Q ss_pred             C
Q 013079          360 E  360 (450)
Q Consensus       360 ~  360 (450)
                      .
T Consensus       383 ~  383 (466)
T PRK07030        383 V  383 (466)
T ss_pred             c
Confidence            5

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.55  E-value=5.6e-13  Score=135.09  Aligned_cols=171  Identities=15%  Similarity=0.193  Sum_probs=120.6

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc-cCC-CEEEEeCCCchhHHHH-HH--HhC------
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC-SSG-GHVVAARTLYGGTHAL-LT--HFF------  162 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~-~~g-d~Vi~~~~~y~~~~~~-~~--~~~------  162 (450)
                      ..++...++.++|.++.+.  +.+.|++|   |+||+..|++... -.| .+|+.....||+.... +.  ...      
T Consensus        90 ~~~~~~~~la~~L~~~~~~~~~~v~f~~S---GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~  166 (433)
T PRK00615         90 LTSEQEILFAEELFSYLGLEDHKIRFVSS---GTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDT  166 (433)
T ss_pred             CCCHHHHHHHHHHHHhCCCCcCEEEEeCc---hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCc
Confidence            3467778889999888754  47899999   9999999998542 123 5788888889885421 10  000      


Q ss_pred             -CCcc-----CeeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCC
Q 013079          163 -PRAC-----NITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSP  230 (450)
Q Consensus       163 -~~~~-----g~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~  230 (450)
                       +...     ......++..|++++++.+..  +++.+|++|.+....|.+.|    +++|.++|++||+++|+||++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG  246 (433)
T PRK00615        167 LTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTG  246 (433)
T ss_pred             CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccc
Confidence             0000     011122344588888888732  46789999999988898876    56999999999999999999865


Q ss_pred             CCC------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH
Q 013079          231 LVL------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM  273 (450)
Q Consensus       231 ~~~------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~  273 (450)
                      +..      .-..+..|+++  ++|.+|+ |.++ |++++++++++.+.
T Consensus       247 ~R~G~~ga~~~~gv~PDi~~--~gK~lgg-G~p~-~av~~~~~i~~~~~  291 (433)
T PRK00615        247 FRVAQGGAAAIYHVKPDITV--YGKILGG-GLPA-AAVVAHKSIMDHLA  291 (433)
T ss_pred             ccccHhHHHHhcCCCCCeEE--EcccccC-Ccce-eeeeecHHHHhhhc
Confidence            521      11223578876  8999984 4665 88889998888774

>PRK15029 arginine decarboxylase; Provisional

Probab=99.54  E-value=4e-13  Score=142.32  Aligned_cols=155  Identities=13%  Similarity=0.076  Sum_probs=124.7

Q ss_pred             CChhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ....+.++++..|+++|++.. ++|+|   .|.+|.+++.+++++||.|++.+.+|.++...+.     +.|..++|+.+
T Consensus       203 p~G~I~eAq~~aA~~fgA~~t~FlvNG---ST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~-----L~ga~Pvyl~P  274 (755)
T PRK15029        203 HTGAFGESEKYAARVFGADRSWSVVVG---TSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLI-----LTGAKPVYMVP  274 (755)
T ss_pred             CCcHHHHHHHHHHHHhCCCcEEEEeCC---hhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-----HcCCeEEEecc
Confidence            345689999999999999886 66788   8889999999999999999999999999998875     47888888864


Q ss_pred             C----------C-----HHHHHHhhhc-CCce--------EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CC
Q 013079          176 S----------D-----HEMVNSAIVQ-GRTK--------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SP  230 (450)
Q Consensus       176 ~----------d-----~~~l~~ai~~-~~t~--------lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~  230 (450)
                      .          +     ++.++++++. +.++        +|++++|+. -|.+.++++|+++|+++++++++||++ ++
T Consensus       275 ~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah  353 (755)
T PRK15029        275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYNAKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_pred             cccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeCHHHHHHHHHhcCCeEEEECccccc
Confidence            2          3     8889888832 2344        888888764 699999999999999999999999998 44


Q ss_pred             CCC-------Ccc-----C-CCCe-EEEeCCCCccccCccceEEEE
Q 013079          231 LVL-------SPA-----R-LGAD-VVVHSISKFISGGADIIAGAV  262 (450)
Q Consensus       231 ~~~-------~~~-----~-~g~d-i~~~S~sK~~g~~g~~igG~l  262 (450)
                      +.+       +..     . .|+| +++.|.||.++.  ...+.++
T Consensus       354 ~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a--lTQaS~L  397 (755)
T PRK15029        354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA--LSQASYI  397 (755)
T ss_pred             cccCccccccccccccccccCCCceEEEEchhhcccc--hhhhhhh
Confidence            432       222     2 5788 999999999974  3344555

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.53  E-value=9.1e-13  Score=125.20  Aligned_cols=247  Identities=15%  Similarity=0.157  Sum_probs=154.7

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHh-ccCC-CEEEEeCCCchhHHHHHHHh---CC
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQL-CSSG-GHVVAARTLYGGTHALLTHF---FP  163 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l-~~~g-d~Vi~~~~~y~~~~~~~~~~---~~  163 (450)
                      |...-+.++.+.++.+.|++.+-.  ..++|++|   |+|||.++++.. .-.| -+||.-+.+|++.......+   .+
T Consensus        84 H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~ns---GsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~  160 (442)
T KOG1404|consen   84 HTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNS---GSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSP  160 (442)
T ss_pred             EeeccccCCcHHHHHHHHHHhCCCCceEEEEecC---CchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCc
Confidence            556667788888899998888754  45799999   999999999754 2222 37888888888754432111   00


Q ss_pred             Ccc---Ce--eEE-EeCCC--------C---------HHHHHHhhh---cCCceEEEEecCCCCcccccC----HHHHHH
Q 013079          164 RAC---NI--TTT-FVDIS--------D---------HEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSR  213 (450)
Q Consensus       164 ~~~---g~--~v~-~v~~~--------d---------~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~I~~  213 (450)
                      ...   +.  -+. ...++        +         .+++++.+.   .+...+.+.|+++..-|.+++    +++..+
T Consensus       161 ~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~  240 (442)
T KOG1404|consen  161 WKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYK  240 (442)
T ss_pred             ccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHH
Confidence            000   00  000 00111        1         134444442   235677888999998899865    889999


Q ss_pred             HHHhcCCEEEEeCCCCCCCC-----CccCCC--CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCC
Q 013079          214 LAHDKGVTVVVDNTFSPLVL-----SPARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT  286 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~-----~~~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~  286 (450)
                      +|+++|.++|.||+|+++..     .....+  .|+++  +.|.+| .|.++ |+++..+++.+-+.....+..+..|+.
T Consensus       241 ~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvT--mAKgiG-nG~Pl-~AVvtt~EIa~v~~~~~~~fnTyggnP  316 (442)
T KOG1404|consen  241 VVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVT--MAKGIG-NGFPL-GAVVTTPEIADVLNQKSSHFNTYGGNP  316 (442)
T ss_pred             HHHHcCCEEEehhhhhccccccccccccccCCCccHHH--HHhhcc-CCCcc-eeeecCHHHHHHHHhccccccccCCCc
Confidence            99999999999999966642     222333  46655  999999 56888 888888889888876554444455665


Q ss_pred             chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          287 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       287 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +...++.+.+.-++. +...++......+|.+.|.+...+  +|-+.             +.+|.|.|+.+++-
T Consensus       317 ~a~avg~aVL~Vike-e~LqE~aa~vG~yl~~~l~~l~d~--h~iIG-------------dVRG~GLm~GvE~V  374 (442)
T KOG1404|consen  317 VACAVGLAVLKVIKE-ENLQENAAEVGSYLLEKLAALKDK--HPIIG-------------DVRGRGLMLGVELV  374 (442)
T ss_pred             hhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhc--CCcee-------------ecccceeEEEEEEe
Confidence            555555444432221 112223344455666666554221  11111             44588999999985

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.52  E-value=2.8e-12  Score=131.15  Aligned_cols=240  Identities=12%  Similarity=0.163  Sum_probs=141.9

Q ss_pred             CCChhHHHHHHHHHHHhCCC----eE-EEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC----C
Q 013079           96 HFNPTVLNLSRQMAALEGTE----AA-YCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP----R  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~----~~-~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~----~  164 (450)
                      ..++...++.++|+++....    .. ++++|   |+||+..|++...  ...++|+.....||+..........    +
T Consensus        98 ~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~S---GsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~  174 (459)
T PRK06931         98 LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPS---GADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPK  174 (459)
T ss_pred             cCCHHHHHHHHHHHHhCCCccccceEEEeCCC---cHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccc
Confidence            45677888999999887522    24 55589   9999999998542  2345788899999887644321100    0


Q ss_pred             ----ccCeeEEEeCCCC-------------HHHH----HHhhh-----cCCceEEEEecCCCCcccccC----HHHHHHH
Q 013079          165 ----ACNITTTFVDISD-------------HEMV----NSAIV-----QGRTKVLYFESISNPTLAVAN----IPELSRL  214 (450)
Q Consensus       165 ----~~g~~v~~v~~~d-------------~~~l----~~ai~-----~~~t~lv~i~~~~NptG~v~~----l~~I~~l  214 (450)
                          .....+.+++..+             .+.+    ++.+.     .+++.+|++|.++...|.+.+    +++|.++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~l  254 (459)
T PRK06931        175 NAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREV  254 (459)
T ss_pred             cCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHH
Confidence                0011233333221             2222    33331     135789999999888887754    8899999


Q ss_pred             HHhcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCc
Q 013079          215 AHDKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTM  287 (450)
Q Consensus       215 a~~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~  287 (450)
                      |+++|+++|.||+++++..       .-..+.+|+++  ++|.+++ |.++ |.++.++++ +.+... .+..+..|+.+
T Consensus       255 c~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt--~gK~l~g-G~Pi-~av~~~~~~-~~~~~~-~~~~T~~gnpl  328 (459)
T PRK06931        255 TQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIV--MSKAVGG-GLPL-AVLGIKKEF-DAWQPG-GHTGTFRGNQL  328 (459)
T ss_pred             HHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEE--ecccccC-Ccce-eeeeeHHHH-hhccCC-CCCCCCCCCHH
Confidence            9999999999999966631       22233578888  8999995 6888 666666553 444211 11223445554


Q ss_pred             hHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          288 NPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       288 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +..++...+..++. ....++..+..++|.+.|+++..+  +|...             +.+|.|.++.+++.
T Consensus       329 a~aaala~L~~l~~-~~l~~~~~~~G~~l~~~L~~l~~~--~~~i~-------------~vrG~Glm~giel~  385 (459)
T PRK06931        329 AMATGLTTLKILKE-ENLAQNAAERGEWLKAQLAELQKR--YPCIG-------------NVRGRGLMIGIEIV  385 (459)
T ss_pred             HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHh--CCCeE-------------eEecCceEEEEEEc
Confidence            44444443332211 112233444445555555543111  11100             23478999999985

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.52  E-value=4.3e-12  Score=125.15  Aligned_cols=247  Identities=15%  Similarity=0.084  Sum_probs=150.7

Q ss_pred             ccccCcccc-CCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc-
Q 013079           62 IEASATFTV-MEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS-  139 (450)
Q Consensus        62 i~~att~~~-~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~-  139 (450)
                      -..|+|.+- ++.+....++.   |    .-.|+  .+|++.+|++.+++++|-+.+++|.+   |..+..+++..+++ 
T Consensus        45 DLrSDTgT~apS~~m~aAM~~---G----DD~Y~--gdpSv~~Lee~vael~G~E~alpthq---GRgaE~Il~~~~~~~  112 (467)
T TIGR02617        45 DLLTDSGTGAVTQSMQAAMMR---G----DEAYS--GSRSYYALAESVKNIFGYQYTIPTHQ---GRGAEQIYIPVLIKK  112 (467)
T ss_pred             ECccCCCCCCCCHHHHHHHHc---C----Ccccc--cCchHHHHHHHHHHHhCCceEEECCC---CchHHHHHHHhhccc
Confidence            456778773 66555555553   2    23355  67899999999999999999999999   99999999998888 


Q ss_pred             CCCEEEEeC--------CCchhHHHHHHHhCCCccCeeEEEe------------C---CCCHHHHHHhhhc---CCceEE
Q 013079          140 SGGHVVAAR--------TLYGGTHALLTHFFPRACNITTTFV------------D---ISDHEMVNSAIVQ---GRTKVL  193 (450)
Q Consensus       140 ~gd~Vi~~~--------~~y~~~~~~~~~~~~~~~g~~v~~v------------~---~~d~~~l~~ai~~---~~t~lv  193 (450)
                      +|+++++..        .-|........     +.|+.+..+            +   ..|+++|+++|..   ++.-.+
T Consensus       113 ~g~e~g~~~~~~~v~hn~~fett~g~a~-----l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v  187 (467)
T TIGR02617       113 REQEKGLDRSKMVAFSNYFFDTTQGHSQ-----INGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYI  187 (467)
T ss_pred             ccccccccccccccceEEEEecchHHHH-----HcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceee
Confidence            566665332        22332222221     235443332            1   1289999999942   233344


Q ss_pred             EEecCCCCc-cccc---CHHHHHHHHHhcCCEEEEeCCC-C---CC---------CCCccC------CCCeEEEeCCCCc
Q 013079          194 YFESISNPT-LAVA---NIPELSRLAHDKGVTVVVDNTF-S---PL---------VLSPAR------LGADVVVHSISKF  250 (450)
Q Consensus       194 ~i~~~~Npt-G~v~---~l~~I~~la~~~gi~livD~~~-~---~~---------~~~~~~------~g~di~~~S~sK~  250 (450)
                      .+.-.+|-. |.+.   .++++.++|++||+++|.|.+- .   .+         ..++.+      -.+|.++.|++|.
T Consensus       188 ~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKg  267 (467)
T TIGR02617       188 VATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKD  267 (467)
T ss_pred             eeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCC
Confidence            433344544 4444   4779999999999999999873 1   11         122221      2589999999999


Q ss_pred             cccCccceEEEEEcCHH----HHHHHHHHhh---hhhhccCCCchHHHHHHHHccCCc-H-HHHHHHHHHHHHHHHHHHH
Q 013079          251 ISGGADIIAGAVCGPAN----LVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPH-L-GLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       251 ~g~~g~~igG~l~~~~~----~~~~l~~~~~---~~~~~~g~~~~~~~a~~~~~~~~~-l-~~~~~~~~~~~~~l~~~L~  321 (450)
                      ++.+   +||+++++++    +.++++...-   +.. ..| .++.....++..++.+ + ...++......++|.+.|.
T Consensus       268 lgAp---vGg~Lag~d~~~~~l~~~~~~~~i~~EGf~-tYG-Glagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~  342 (467)
T TIGR02617       268 AMVP---MGGLLCFKDDSFFDVYTECRTLCVVQEGFP-TYG-GLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLE  342 (467)
T ss_pred             CCCc---ccceEEecchhHHHHHHHHHhhcccccCCc-CcC-chhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHH
Confidence            9977   6788887654    3344433211   221 222 2232222222223322 2 2233333455678999999


Q ss_pred             hCCCeeeCC
Q 013079          322 KLGLKVLYP  330 (450)
Q Consensus       322 ~~~~~v~~p  330 (450)
                      +.|..+..+
T Consensus       343 ~~Gvpi~~~  351 (467)
T TIGR02617       343 EIGVVCQQA  351 (467)
T ss_pred             hCCCcEEec
Confidence            988755443

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.51  E-value=5e-12  Score=132.86  Aligned_cols=153  Identities=14%  Similarity=0.159  Sum_probs=120.4

Q ss_pred             ChhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH-HHHhCCCccCeeEEEeCC
Q 013079           98 NPTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVDI  175 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~-~~~~~~~~~g~~v~~v~~  175 (450)
                      .....++++..|+++|++.. ++++|   .|.+|.+++.+++.+||.|++.+.+|.++... +.     +.|..++|+.+
T Consensus       173 eG~i~eAq~~AA~~fgAd~tyFlvNG---TS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLi-----LsGa~PVYl~P  244 (720)
T PRK13578        173 EGAAKDAQKHAAKVFNADKTYFVLNG---TSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALI-----QAGATPVYLET  244 (720)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEEeCC---hhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH-----HcCCeEEEeec
Confidence            34678999999999999887 56778   88899999999999999999999999998874 43     36888888754


Q ss_pred             C----------C-----HHHHHHhhhcC--C-------ceEEEEecCCCCcccccCHHHHHHH-HHhcCCEEEEeCCC-C
Q 013079          176 S----------D-----HEMVNSAIVQG--R-------TKVLYFESISNPTLAVANIPELSRL-AHDKGVTVVVDNTF-S  229 (450)
Q Consensus       176 ~----------d-----~~~l~~ai~~~--~-------t~lv~i~~~~NptG~v~~l~~I~~l-a~~~gi~livD~~~-~  229 (450)
                      .          +     .+.++++|+..  +       .++++|++|+. -|.+.++++|+++ ++.++ ++++|++| +
T Consensus       245 ~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~ydi~~I~~~~~h~~~-~llvDEAhga  322 (720)
T PRK13578        245 ARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYNARQVVDKIGHLCD-YILFDSAWVG  322 (720)
T ss_pred             cccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeecHHHHHHHhhccCC-cEEEeCcchh
Confidence            2          3     45588888322  1       58899888754 6999999999999 67778 99999998 5


Q ss_pred             CCCCCc---------cCCCCe----EEEeCCCCccccCccceEEEE
Q 013079          230 PLVLSP---------ARLGAD----VVVHSISKFISGGADIIAGAV  262 (450)
Q Consensus       230 ~~~~~~---------~~~g~d----i~~~S~sK~~g~~g~~igG~l  262 (450)
                      ++.+.+         .+.|+|    +++.|.||.+++  ...+.++
T Consensus       323 h~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a--lTQaS~L  366 (720)
T PRK13578        323 YEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG--FSQTSQI  366 (720)
T ss_pred             hhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh--hhhHhhh
Confidence            554444         244899    999999999974  3344555

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.51  E-value=1.8e-11  Score=116.86  Aligned_cols=249  Identities=14%  Similarity=0.130  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHh-CCC-------e--EEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079          101 VLNLSRQMAALE-GTE-------A--AYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus       101 ~~~l~~~iA~l~-g~~-------~--~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      ...+.+.+++++ |.+       .  .+-|.|   ||.|+..+..-+.  .+...|.+++|+|+.+...+.     ..|.
T Consensus        71 ~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~G---GTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~-----~aGl  142 (396)
T COG1448          71 LPEFLEAVQKLLFGADSPALAEDRVATVQTLG---GTGALRVAADFLARFFPDATVWISDPTWPNHKAIFE-----AAGL  142 (396)
T ss_pred             cHHHHHHHHHHhcCCCcHHHHhhhHhheecCC---cchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHH-----hcCC
Confidence            455667777754 533       1  377899   9999999887663  345579999999999998886     3677


Q ss_pred             eEEEeCCC-------CHHHHHHhhhc-CCceEEEE-ecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013079          169 TTTFVDIS-------DHEMVNSAIVQ-GRTKVLYF-ESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVLS--  234 (450)
Q Consensus       169 ~v~~v~~~-------d~~~l~~ai~~-~~t~lv~i-~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~~--  234 (450)
                      ++..++.-       |.+.+.+.+.+ ++..+|++ ...|||||.-.   ..++|+++.+++|.+-++|-+|.+|.-.  
T Consensus       143 ~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~Gle  222 (396)
T COG1448         143 EVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLE  222 (396)
T ss_pred             ceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchH
Confidence            77655432       67777666632 22334444 45799999875   4778999999999999999998655421  


Q ss_pred             --cc------CCC-CeEEEeCCCCccccCccceEEEEE-c-CHHHHHHHH----HHhhhhhhccCCCchHHHHHHHHcc-
Q 013079          235 --PA------RLG-ADVVVHSISKFISGGADIIAGAVC-G-PANLVNSMM----DLHQGALMLLGPTMNPKVAFELSER-  298 (450)
Q Consensus       235 --~~------~~g-~di~~~S~sK~~g~~g~~igG~l~-~-~~~~~~~l~----~~~~~~~~~~g~~~~~~~a~~~~~~-  298 (450)
                        ..      ..+ --+++.|+||.+|.-|.|+|++.+ + +.+...++.    ...+. ..+.++......+...+.. 
T Consensus       223 eDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~-~ySnPP~~Ga~vva~IL~~p  301 (396)
T COG1448         223 EDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRT-NYSNPPAHGAAVVATILNNP  301 (396)
T ss_pred             HHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHh-ccCCCchhhHHHHHHHhCCH
Confidence              11      112 268999999999999999965543 2 344444432    22221 1122333333333332221 


Q ss_pred             ------CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013079          299 ------IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL  372 (450)
Q Consensus       299 ------~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l  372 (450)
                            ..++...++++.+.|..|.+.|++++..-....+.                ..-||+++.=-+.+++.++.++.
T Consensus       302 ~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~----------------~Q~GMFsy~Gls~~QV~rLree~  365 (396)
T COG1448         302 ELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFII----------------SQRGMFSYTGLSPEQVDRLREEF  365 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHh----------------hcCceeecCCCCHHHHHHHHHhc
Confidence                  12344555677888889999998854311111111                12347777633666666665554


Q ss_pred             hc
Q 013079          373 QN  374 (450)
Q Consensus       373 ~~  374 (450)
                      .+
T Consensus       366 ~I  367 (396)
T COG1448         366 GI  367 (396)
T ss_pred             cE
Confidence            43

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.50  E-value=1.2e-11  Score=126.16  Aligned_cols=253  Identities=13%  Similarity=0.176  Sum_probs=146.0

Q ss_pred             CCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhcc--------C------CCEEEEeCCCchhHHHHH
Q 013079           96 HFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCS--------S------GGHVVAARTLYGGTHALL  158 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~--------~------gd~Vi~~~~~y~~~~~~~  158 (450)
                      ..++...++.++|+++.+   .+.++|++|   |+||+..|++....        .      ..+||.....||+.....
T Consensus        89 ~~~~~~~~la~~l~~~~~p~~~~~v~f~~S---GsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~a  165 (443)
T PRK08297         89 VYTVEMARFVDTFARVLGDPELPHLFFVDG---GALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYT  165 (443)
T ss_pred             cCCHHHHHHHHHHHhhcCCCCCCEEEEeCc---hHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhh
Confidence            345677788888988862   367899999   99999999986520        1      257999999998865432


Q ss_pred             HHhCC-----C----ccC---eeEEEe--CC-------------CCHHHHHHhhh--cCCceEEEEecCCCCcccccC--
Q 013079          159 THFFP-----R----ACN---ITTTFV--DI-------------SDHEMVNSAIV--QGRTKVLYFESISNPTLAVAN--  207 (450)
Q Consensus       159 ~~~~~-----~----~~g---~~v~~v--~~-------------~d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~--  207 (450)
                      .....     +    ..+   +...++  +.             .+++++++.+.  .+++.+|++|.++...|.+.+  
T Consensus       166 ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~  245 (443)
T PRK08297        166 LSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRP  245 (443)
T ss_pred             hhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCH
Confidence            11100     0    000   000011  00             02345556662  257899999999888888743  


Q ss_pred             --HHHHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH-Hh-
Q 013079          208 --IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-LH-  276 (450)
Q Consensus       208 --l~~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~~-  276 (450)
                        +++|.++|++||+++|+||+++++...       -....+|+++  ++|.++     ++|++.++ ++.+.+.. .. 
T Consensus       246 ~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~-----~~a~l~~~-~i~~~~~~~~~~  317 (443)
T PRK08297        246 EFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKTQ-----VCGIMAGR-RVDEVEDNVFAV  317 (443)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--eccccc-----ccceecch-HHHHhhhhhccC
Confidence              889999999999999999999666322       1233578887  899874     33555554 32221111 10 


Q ss_pred             --hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 --QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 --~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                        ....+..++.++..++...+..++. ....++..+..+++.+.|+++..+  +|....            +.+|.|.+
T Consensus       318 ~~~~~~T~~gnpl~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~~~~------------~vrg~G~~  382 (443)
T PRK08297        318 SSRINSTWGGNLVDMVRARRILEVIEE-DGLVENAARQGEYLLARLEELAAE--FPAVVS------------NVRGRGLM  382 (443)
T ss_pred             ccccCCCCCccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH--CCCcce------------eeeccceE
Confidence              1122233444443333333332211 123344455555666666543111  111000            12267889


Q ss_pred             EEEEeCCHHHHHHHHHHhhc
Q 013079          355 LCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       355 ~~~~l~~~~~~~~~~~~l~~  374 (450)
                      +.+++.+.+....+...+..
T Consensus       383 ~~i~~~~~~~~~~~~~~l~~  402 (443)
T PRK08297        383 CAFDLPTTADRDEVIRRLWE  402 (443)
T ss_pred             EEEEecCHHHHHHHHHHHHH
Confidence            99999865555667766654

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.49  E-value=8.1e-13  Score=131.45  Aligned_cols=222  Identities=14%  Similarity=0.154  Sum_probs=141.7

Q ss_pred             CChhHHHHHH----HHHHHhCCC---------eEEEecChHHHHHHHHHHHHHhcc--------CC-----C-EEEEeCC
Q 013079           97 FNPTVLNLSR----QMAALEGTE---------AAYCTASDKAGMSAISSVLMQLCS--------SG-----G-HVVAART  149 (450)
Q Consensus        97 ~~~~~~~l~~----~iA~l~g~~---------~~~~tsg~~~gt~ai~~al~~l~~--------~g-----d-~Vi~~~~  149 (450)
                      ..|...++|.    .+++++|.+         .-+||+|   ||+||..++.+..+        .|     + .|+++..
T Consensus        73 ~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~G---gt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~  149 (373)
T PF00282_consen   73 ASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSG---GTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQ  149 (373)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESS---HHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETT
T ss_pred             cccccccchHHHHHHHHHHhCCcccccccCCCceeEecc---chHHHHHHHHHHHHHHhhhhhhcccccccccccccccc
Confidence            4566655555    566667755         3599999   99999988865421        12     2 5778888


Q ss_pred             CchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC----Cce-EEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079          150 LYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG----RTK-VLYFESISNPTLAVANIPELSRLAHDKG  219 (450)
Q Consensus       150 ~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~----~t~-lv~i~~~~NptG~v~~l~~I~~la~~~g  219 (450)
                      .|.+....+.     ++|+.++.|+.+     |+++|++++...    ++- +|+....+..+|.+.|+++|+++|++++
T Consensus       150 aH~S~~Kaa~-----~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~  224 (373)
T PF00282_consen  150 AHYSIEKAAR-----ILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYN  224 (373)
T ss_dssp             S-THHHHHHH-----HTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT
T ss_pred             cccHHHHhcc-----eeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccc
Confidence            9999988875     466667777655     788888887321    223 5666777889999999999999999999


Q ss_pred             CEEEEeCCCCC-CCC----CccCC---CCeEEEeCCCCccccCccceEEEE-EcCHHHHHHHHHHhhhhhh---------
Q 013079          220 VTVVVDNTFSP-LVL----SPARL---GADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALM---------  281 (450)
Q Consensus       220 i~livD~~~~~-~~~----~~~~~---g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~---------  281 (450)
                      +++|||++|++ ..+    .....   .+|-++.+.||+++.|-. . |++ +.++............+..         
T Consensus       225 ~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~-~-~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~  302 (373)
T PF00282_consen  225 IWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYG-C-GVLLVRDKSDLRDAFSINADYLGNDDRESDES  302 (373)
T ss_dssp             -EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS---EEEEESSGGGHHGGGEEEETCTT-S-SSS-GG
T ss_pred             eeeeecccccccccccccccccccccccccccccchhhhhcCCcc-c-eeEEeecccchHHHhccChhhhcccccccccc
Confidence            99999999955 221    11111   589999999999997754 4 555 5555544332100000000         


Q ss_pred             -------ccCCC-chHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eee
Q 013079          282 -------LLGPT-MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVL  328 (450)
Q Consensus       282 -------~~g~~-~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~  328 (450)
                             ..++- .....+|..++  +.+.+.+++++..++++++.+.|++.+. ++.
T Consensus       303 ~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~  360 (373)
T PF00282_consen  303 YDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELV  360 (373)
T ss_dssp             GCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred             cccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence                   01111 12233444333  4566788889999999999999999875 544

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.49  E-value=3.1e-13  Score=133.22  Aligned_cols=238  Identities=17%  Similarity=0.219  Sum_probs=149.9

Q ss_pred             cCCCChhHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHhc-------c-CCCEEEEeCCCchhHHHHH-H---
Q 013079           94 SRHFNPTVLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQLC-------S-SGGHVVAARTLYGGTHALL-T---  159 (450)
Q Consensus        94 ~r~~~~~~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l~-------~-~gd~Vi~~~~~y~~~~~~~-~---  159 (450)
                      ....++...++.++|.++.  +.+.++|++|   |++|+..|++...       . ...+|+.....||+..... .   
T Consensus        54 ~~~~~~~~~~la~~L~~~~p~~~~~v~f~~s---GseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~  130 (339)
T PF00202_consen   54 SGFTHPEAAELAEKLAELFPGGLDRVFFANS---GSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTG  130 (339)
T ss_dssp             TTSEEHHHHHHHHHHHHHSSTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSS
T ss_pred             cceeccchhhhhhhhhhccccccceeeeccC---chHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccC
Confidence            4556788899999999999  4567899999   9999999998654       1 2368999999998743221 1   


Q ss_pred             -----HhCCCccCeeEEEeCCCCHHH----------HHHh---hhcCCceEEEEecCCCCcccccC----HHHHHHHHHh
Q 013079          160 -----HFFPRACNITTTFVDISDHEM----------VNSA---IVQGRTKVLYFESISNPTLAVAN----IPELSRLAHD  217 (450)
Q Consensus       160 -----~~~~~~~g~~v~~v~~~d~~~----------l~~a---i~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~  217 (450)
                           ..... ....+..+|.+++..          +++.   ...+++.+|++|+++...|.+.+    +++|.++|++
T Consensus       131 ~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~  209 (339)
T PF00202_consen  131 NPPYRKGFGP-LYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCRE  209 (339)
T ss_dssp             STHHHTTTCS-SSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHH
T ss_pred             Cccccccccc-cccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccc
Confidence                 11111 122456677776655          2222   22467889999999888887642    8999999999


Q ss_pred             cCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH
Q 013079          218 KGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK  290 (450)
Q Consensus       218 ~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~  290 (450)
                      +|+++|+||+++++..       ....+.+|+++  ++|.+++. .++ |.++.++++.+.+..... ..+..++..+..
T Consensus       210 ~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~--~gK~l~gG-~p~-sav~~~~~i~~~~~~~~~-~~T~~g~p~~~a  284 (339)
T PF00202_consen  210 HGILLIADEVQTGFGRTGKFFASEHYGVDPDIVT--FGKGLGGG-LPI-SAVLGSEEIMEAFQPGSH-GSTFGGNPLSCA  284 (339)
T ss_dssp             TT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEE--EEGGGGTT-SSE-EEEEEEHHHHTTSCTTSS-TCTTTT-HHHHH
T ss_pred             cccceecccccccccccCCccceecccccCcccc--cccchhhh-hhc-ccccccchhhcccccccc-ccccccchHhhh
Confidence            9999999999966632       11233579998  56999964 888 888888888776532221 222334444444


Q ss_pred             HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       291 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ++...+..++.. ...++..+..+++.+.|+++    +. +.                  ..+|.|.++.+++.
T Consensus       285 aa~~~l~~~~~~-~~~~~~~~~g~~l~~~L~~l~~~~~~-i~------------------~vrg~Gl~~~ie~~  338 (339)
T PF00202_consen  285 AALATLEILEEE-DLLERVRELGERLREGLRELAARYPL-IG------------------EVRGIGLMIGIELV  338 (339)
T ss_dssp             HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHTTT-EE------------------EEEEETTEEEEEES
T ss_pred             hhhhHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHhCCC-eE------------------EEeeeCeEEEEEEE
Confidence            443333322211 12233344445555555432    22 10                  22368889999875

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.48  E-value=2.3e-11  Score=130.86  Aligned_cols=197  Identities=13%  Similarity=0.139  Sum_probs=124.8

Q ss_pred             CCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhcc---------------------CCCEEEEeCCC
Q 013079           95 RHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCS---------------------SGGHVVAARTL  150 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~---------------------~gd~Vi~~~~~  150 (450)
                      ...++...+|.++|++..+   .+.++|++|   |++|+..|++...+                     ...+||.....
T Consensus       405 ~~~hepa~~LAe~L~~~~~~~~l~rVffs~s---GSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gs  481 (817)
T PLN02974        405 ENVHEPALRAAELLLGGPGKGWASRVFFSDN---GSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGS  481 (817)
T ss_pred             ccCCHHHHHHHHHHHhccCCCCCCEEEECCc---hHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCC
Confidence            3467778888999988765   257899999   99999999975421                     12369999988


Q ss_pred             chhHHHHHHHhC-----------CCcc--CeeE----EE---------eCCC----------------------------
Q 013079          151 YGGTHALLTHFF-----------PRAC--NITT----TF---------VDIS----------------------------  176 (450)
Q Consensus       151 y~~~~~~~~~~~-----------~~~~--g~~v----~~---------v~~~----------------------------  176 (450)
                      ||+.........           +...  +..+    .+         ++..                            
T Consensus       482 YHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~  561 (817)
T PLN02974        482 YHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPL  561 (817)
T ss_pred             cCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhh
Confidence            887332211110           0000  0000    00         0000                            


Q ss_pred             ---CHHHHHHhhh-------cCCceEEEEecC-CCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC-------C
Q 013079          177 ---DHEMVNSAIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL-------S  234 (450)
Q Consensus       177 ---d~~~l~~ai~-------~~~t~lv~i~~~-~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~-------~  234 (450)
                         ..+.+++.|.       .+++.+|++|.+ +...|.+.+    +++|.++|++||+++|.||+++++..       +
T Consensus       562 ~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e  641 (817)
T PLN02974        562 AKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWE  641 (817)
T ss_pred             hHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHH
Confidence               0144566552       146789999995 777788754    88999999999999999999976632       2


Q ss_pred             ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-----hhhhhccCCCchHHHHHHHHc
Q 013079          235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-----QGALMLLGPTMNPKVAFELSE  297 (450)
Q Consensus       235 ~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-----~~~~~~~g~~~~~~~a~~~~~  297 (450)
                      ......|+++  ++|.+++.-.++ |++++++++.+.+....     .+..++.|+.+...++...+.
T Consensus       642 ~~gv~PDIi~--~gKgLtgG~~Pl-aa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~  706 (817)
T PLN02974        642 LLGCKPDIAC--YAKLLTGGLVPL-AATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQ  706 (817)
T ss_pred             hcCCCCCEEe--ecccccCCCCcc-EEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHH
Confidence            2233478888  999999533578 88888888888774210     122334555555555544443

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.48  E-value=8.3e-12  Score=119.59  Aligned_cols=223  Identities=13%  Similarity=0.139  Sum_probs=143.3

Q ss_pred             ccccCCCChhHHHHHHHHHHHh---CCCeEEEecChHHHHHHHHHHHHHhccC--CC------EEEEeCCCchhHH-HHH
Q 013079           91 FIYSRHFNPTVLNLSRQMAALE---GTEAAYCTASDKAGMSAISSVLMQLCSS--GG------HVVAARTLYGGTH-ALL  158 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~---g~~~~~~tsg~~~gt~ai~~al~~l~~~--gd------~Vi~~~~~y~~~~-~~~  158 (450)
                      |..+-+......++++.|.+..   .++.++|++|   ||+|+..||+...+.  -+      .+|....+||+-. ..+
T Consensus        90 hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~ns---GTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgal  166 (433)
T KOG1401|consen   90 HSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNS---GTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGAL  166 (433)
T ss_pred             eccCccccHHHHHHHHHHHhcccCCCccEEEEecC---CcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHH
Confidence            4444433333667788888877   5788999999   999999999754321  12      3888888887733 222


Q ss_pred             HH-hCCCccCe-------eEEEeCCCCHHHHHHhhhcC--CceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEE
Q 013079          159 TH-FFPRACNI-------TTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVV  224 (450)
Q Consensus       159 ~~-~~~~~~g~-------~v~~v~~~d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~liv  224 (450)
                      .. .... .+.       .+......|..++++.++..  +..+|++|..+..-|.++.    +..|.++|+++|++||.
T Consensus       167 s~~~~s~-y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~  245 (433)
T KOG1401|consen  167 SVTGNSK-YGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIF  245 (433)
T ss_pred             Hhhcccc-cCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEe
Confidence            20 0010 121       33444455899999988433  3689999999988888753    78999999999999999


Q ss_pred             eCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHH
Q 013079          225 DNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFEL  295 (450)
Q Consensus       225 D~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~  295 (450)
                      ||+++++...       ....-.|+.+  +.|.+++ |.++ |+..+++++.+.+.....  +..++.|+.+...++...
T Consensus       246 DEV~tG~gR~g~~~a~e~~~~~PDI~t--~aK~L~g-GlPi-gA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~  321 (433)
T KOG1401|consen  246 DEVQTGLGRLGYGWAQEYFGVTPDITT--VAKPLGG-GLPI-GATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKV  321 (433)
T ss_pred             ehhhhCccccchHHHHHHhCcCCccee--ehhhccC-Ccee-EEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHH
Confidence            9999765422       1223467777  9999994 6999 888888888887754322  123355555555555444


Q ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          296 SERIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       296 ~~~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      +..+.. .+..++..+..+.|.+.|.+
T Consensus       322 l~~l~~-~e~~k~vs~~~k~L~~~l~e  347 (433)
T KOG1401|consen  322 LDELKD-PETLKNVSKIGKELRKLLDE  347 (433)
T ss_pred             HHHHcC-HHHHHHHHHHHHHHHHHHHH
Confidence            433322 22333333333444444443

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=4e-13  Score=129.61  Aligned_cols=217  Identities=15%  Similarity=0.221  Sum_probs=159.8

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD  177 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d  177 (450)
                      .....++++.+|+++|.+++++++-   |-..+.+.+.+++.+|.-|+.....|.+...-+     ++.|..++....+|
T Consensus       181 ~~~hkelE~l~A~f~g~e~a~vF~m---Gf~TNs~~~p~l~~~gsLIiSDelNHaSi~~Ga-----RLSgAtiRVfkHNd  252 (519)
T KOG1357|consen  181 TEEHKELEELVARFLGVEDAIVFSM---GFATNSMNIPSLLGKGSLIISDELNHASLITGA-----RLSGATTRVFRHND  252 (519)
T ss_pred             HHHHHHHHHHHHHhcCCcceEEEec---cccccccCcceeecCCcceeeccccchheeccc-----cccCceEEEEecCC
Confidence            3567899999999999999888887   778888888889999887777777777655443     35688887778888


Q ss_pred             HHHHHHhhhc------CCc------eEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCC---C------C
Q 013079          178 HEMVNSAIVQ------GRT------KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLV---L------S  234 (450)
Q Consensus       178 ~~~l~~ai~~------~~t------~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~---~------~  234 (450)
                      ..+||+.+++      ++|      .+|+++.....-|.+.++.++.+++|++..+++.||++  +.+.   .      .
T Consensus       253 m~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g  332 (519)
T KOG1357|consen  253 MQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFG  332 (519)
T ss_pred             HHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccC
Confidence            8888887721      222      36777888889999999999999999999999999997  2221   1      1


Q ss_pred             ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC---------CcHHHH
Q 013079          235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---------PHLGLR  305 (450)
Q Consensus       235 ~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---------~~l~~~  305 (450)
                      +..-.+|+++++++|++|..    ||++.+++++++.++.....  ...+..+++..+...+..+         ....++
T Consensus       333 ~d~~dvDImMGtftKSfga~----GGyiagsk~lid~lrt~s~~--~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k  406 (519)
T KOG1357|consen  333 VDPEDVDIMMGTFTKSFGAA----GGYIAGSKELIDYLRTPSPS--ALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQK  406 (519)
T ss_pred             CCchhheeecceehhhcccc----cceecCcHHHHhhhccCCCc--eeecccCChHHHHHHHHHHHhhcCCCcccHHHHH
Confidence            22225899999999999965    49999999999887643321  1233334444333322222         224567


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeee
Q 013079          306 MKEHCHRALIFARRMKKLGLKVL  328 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~~v~  328 (450)
                      .++..++..+++..|+..++.+.
T Consensus       407 ~~~l~~ns~yfr~~l~~~gfivy  429 (519)
T KOG1357|consen  407 IERLAENSRYFRWELQKMGFIVY  429 (519)
T ss_pred             HHHHHhhhHHHHHhhhcCcEEEe
Confidence            77889999999999988877554

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.47  E-value=1.4e-11  Score=122.00  Aligned_cols=287  Identities=14%  Similarity=0.109  Sum_probs=174.1

Q ss_pred             cCCCChhHHHHHHHHHHHhCCC--e--EEEecChHHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079           94 SRHFNPTVLNLSRQMAALEGTE--A--AYCTASDKAGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus        94 ~r~~~~~~~~l~~~iA~l~g~~--~--~~~tsg~~~gt~ai~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      +.......+++++.|.++++.+  .  .++++|   ||.++.+++..++ ++|+++++.. .|+.-..  .+...+ .|+
T Consensus        34 s~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~Gs---GT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~--~eia~~-~g~  106 (374)
T TIGR01365        34 SKLGKEKLAEAIKKTREMLGVPADYLIGIVPAS---DTGAVEMALWSMLGCRGVDVLAWE-SFGKGWV--TDVTKQ-LKL  106 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCc---hHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHH--HHHHHh-cCC
Confidence            3334566788889999999853  2  466888   9999999999998 5788888764 3433211  022222 566


Q ss_pred             -eEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCC
Q 013079          169 -TTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGA  240 (450)
Q Consensus       169 -~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~  240 (450)
                       +++.++..     |+++++.   .   +.|++.+.-..||...|+++|.+.+  ++++++||.+-  +...++..  ++
T Consensus       107 ~~v~~l~~~~g~~~~~~~ve~---~---~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d--~i  176 (374)
T TIGR01365       107 PDVRVLEAEYGKLPDLKKVDF---K---NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH--KL  176 (374)
T ss_pred             CCcEEEcCCCCCCCCHHHcCC---C---CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChh--HC
Confidence             35555433     6777652   2   1255666666789999997766432  58999999984  43334333  48


Q ss_pred             eEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh---------h---------hhh-hccCCCchHHHHHHHHccC--
Q 013079          241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH---------Q---------GAL-MLLGPTMNPKVAFELSERI--  299 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~---------~---------~~~-~~~g~~~~~~~a~~~~~~~--  299 (450)
                      |+++.|..|.++++++ + ++++.+++.+++.....         .         ... ..+..++.....+.+...+  
T Consensus       177 Dv~~tgsQK~L~~ppG-l-s~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~  254 (374)
T TIGR01365       177 DVVTFSWQKVLGGEGA-H-GMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKW  254 (374)
T ss_pred             cEEEEechhccCCCCc-e-EEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHH
Confidence            9999999999998764 3 77777877765544210         0         000 1223333333333222222  


Q ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH------H----
Q 013079          300 ----PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE------K----  364 (450)
Q Consensus       300 ----~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~------~----  364 (450)
                          ..++.+.+++.++++.+.+.+++++ ..+.... +..              ....++.+.++...      +    
T Consensus       255 i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~-~~~--------------rS~tvt~v~~~~~~~~~~~~~~~~~  319 (374)
T TIGR01365       255 AESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAET-PEI--------------RSNTSVCLKVVDPAIDALDEDAQAD  319 (374)
T ss_pred             HHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCC-hhh--------------cCCCeEEEEeCCccccccccchhhH
Confidence                2488899999999999999999998 4432210 100              11226667775321      2    


Q ss_pred             -HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          365 -ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       365 -~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                       ...|.+.+...   | +.+..|...                       ..+..+||.-- -+-..+.++.|..+|+-+
T Consensus       320 ~~~~~~~~l~~~---g-i~i~~G~~~-----------------------~~~~~fRIg~~-G~i~~~di~~l~~~l~~~  370 (374)
T TIGR01365       320 FAKELISTLEKE---G-VAYDIGSYR-----------------------DAPSGLRIWCG-ATVEKSDLECLCPWLDWA  370 (374)
T ss_pred             HHHHHHHHHHHC---C-EEEeccccc-----------------------cCCCceEEecC-CcCCHHHHHHHHHHHHHH
Confidence             46677777642   3 344433211                       11367999654 445566677777777644

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PLN02452 phosphoserine transaminase

Probab=99.47  E-value=9.6e-12  Score=123.14  Aligned_cols=282  Identities=12%  Similarity=0.070  Sum_probs=178.3

Q ss_pred             ChhHHHHHHHHHHHhCCC---eE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           98 NPTVLNLSRQMAALEGTE---AA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~---~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      ....+++++.|.++++.+   .+ ++..|   ||.++.+++..++.+|+++++....+.+-...  +...+ .|...+..
T Consensus        51 ~~i~~~~~~~L~~l~~~p~~y~v~~l~Gs---gt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~--~~a~~-~g~~~~~~  124 (365)
T PLN02452         51 LSIIQKAEADLRELLDIPDNYEVLFLQGG---ASTQFAAIPLNLCKPGDKADFVVTGSWSKKAA--KEAKK-YCKTNVIA  124 (365)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEeCc---cHHHHHHHHHhcCCCCCeEEEEECCHHHHHHH--HHHHH-hCCCcEEE
Confidence            356788999999999863   35 45577   99999999999999999888776665544322  22222 34322222


Q ss_pred             ---C-----CCCHHHHHHhhhcCCceEEEEecCCCCccc-ccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeE
Q 013079          174 ---D-----ISDHEMVNSAIVQGRTKVLYFESISNPTLA-VANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADV  242 (450)
Q Consensus       174 ---~-----~~d~~~l~~ai~~~~t~lv~i~~~~NptG~-v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di  242 (450)
                         +     ..++++++  . .++.+.|++++....||. ..|++++.      ++++++|.++  +...++..++++|+
T Consensus       125 ~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~hnETstGv~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~  195 (365)
T PLN02452        125 SGKDEKYTKIPSVSEWE--L-TPDAKFVHICANETIHGVEFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY  195 (365)
T ss_pred             ecCCCCCCCCCChHHcC--C-CCCCcEEEECCCCCCCcEecCcccccC------CCeEEEECCccccCcccCHHHcCEEE
Confidence               1     22555542  2 456788888877778898 48887765      3899999997  55566666677655


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh-----h---ccCCCchHHHHHH---HHccCC---cHHHHHHH
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL-----M---LLGPTMNPKVAFE---LSERIP---HLGLRMKE  308 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~-----~---~~g~~~~~~~a~~---~~~~~~---~l~~~~~~  308 (450)
                        .|.+|.+|++|  + |+++.++++++++........     .   ..-++++....+.   ++..+.   .++.+.++
T Consensus       196 --~saqK~lGP~G--l-~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r  270 (365)
T PLN02452        196 --AGAQKNVGPSG--V-TIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKR  270 (365)
T ss_pred             --EecccccCCCC--e-EEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence              59999999988  5 888888887765432111000     0   1112333332222   222221   35667778


Q ss_pred             HHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccc
Q 013079          309 HCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      ++++++++.+.|++. ++  ..+..  .+.+           ....+++|.+++.+...+|++.++..+    +..--| 
T Consensus       271 ~~~~a~~l~~~l~~~~G~--y~~~~--~~~~-----------rs~~~vsF~~~~~~~~~~f~~~~~~~g----~~~~~G-  330 (365)
T PLN02452        271 NIRKADLLYDAIDESNGF--YVCPV--EKSV-----------RSLMNVPFTLGGSELEAEFVKEAAKAG----MVQLKG-  330 (365)
T ss_pred             HHHHHHHHHHHHHhCCCc--ccCCC--ChHH-----------hCCeEEEEEcCCchhHHHHHHHHHHCC----CcccCC-
Confidence            899999999999875 33  11111  1110           123489999987666788998888633    221111 


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                               ..+               -+-+|+|+= -.-..+.+++|.+.+++..+
T Consensus       331 ---------~r~---------------~gg~R~s~y-na~~~~~v~~L~~~m~~f~~  362 (365)
T PLN02452        331 ---------HRS---------------VGGMRASIY-NAMPLAGVEKLVAFMKDFQA  362 (365)
T ss_pred             ---------ccc---------------cCceEEECc-CCCCHHHHHHHHHHHHHHHH
Confidence                     110               123999976 66778888999998888754

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.45  E-value=6.3e-12  Score=127.88  Aligned_cols=287  Identities=15%  Similarity=0.125  Sum_probs=163.8

Q ss_pred             CCChhHHHHHHHHHH----HhC--CCeEEEecChHHHHHHHHHHHHHhcc--------------------------CC--
Q 013079           96 HFNPTVLNLSRQMAA----LEG--TEAAYCTASDKAGMSAISSVLMQLCS--------------------------SG--  141 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~----l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------------------------~g--  141 (450)
                      ..++...++.+.|++    +..  .+.++|++|   |+||+..|++....                          +|  
T Consensus        98 ~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~S---GsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~  174 (464)
T TIGR00699        98 LGNFPSKDWAKILKEGILKVAPKGQDQVWTGMS---GSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSP  174 (464)
T ss_pred             CCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCC---cHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCc
Confidence            345556666676644    443  367899999   99999999985521                          11  


Q ss_pred             -CEEEEeCCCchhHHHHHHHhCC----CccCe---eEEEeCC-------------------CCHHHHHHhhhc--CCceE
Q 013079          142 -GHVVAARTLYGGTHALLTHFFP----RACNI---TTTFVDI-------------------SDHEMVNSAIVQ--GRTKV  192 (450)
Q Consensus       142 -d~Vi~~~~~y~~~~~~~~~~~~----~~~g~---~v~~v~~-------------------~d~~~l~~ai~~--~~t~l  192 (450)
                       .+||.....||+..........    +..+.   .+.+++.                   .+++.+++++..  +++.+
T Consensus       175 r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAA  254 (464)
T TIGR00699       175 DLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAA  254 (464)
T ss_pred             CCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEE
Confidence             2699999999886543211100    00010   1111111                   135566776632  46899


Q ss_pred             EEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCC--CeEEEeCCCCccccCccceE
Q 013079          193 LYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLG--ADVVVHSISKFISGGADIIA  259 (450)
Q Consensus       193 v~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-------~~~g--~di~~~S~sK~~g~~g~~ig  259 (450)
                      |++|.+....|.+.+    +++|.++|+++|+++|+||+++++....       ..+.  +|+++  ++|.+++.     
T Consensus       255 vI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t--~gK~lg~g-----  327 (464)
T TIGR00699       255 IIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVT--FSKKFQTA-----  327 (464)
T ss_pred             EEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEE--ehhhhccC-----
Confidence            999999999999887    9999999999999999999986553211       1222  78877  89999633     


Q ss_pred             EEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCchh
Q 013079          260 GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP-GLEDHPHH  338 (450)
Q Consensus       260 G~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p-~~~~~p~~  338 (450)
                      |+++.++ .+...... ....+..|+.+...++...+..++. ....++..+..++|.+.|+++..+  +| .+.     
T Consensus       328 G~~~~~~-~~~~~~~~-~~~~T~~gnp~~~aaa~a~L~~l~~-~~l~~~~~~~g~~l~~~L~~l~~~--~~~~i~-----  397 (464)
T TIGR00699       328 GYFFHDP-AFRPNKPY-RQFNTWMGDPSRALILREIIQEIKR-KDLLENVAHVGDYLYTGLEDLQKK--YPEFIQ-----  397 (464)
T ss_pred             Cccccch-hccCCCCc-ccccCCCCCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCcee-----
Confidence            3333332 11110000 1112233444333333333322211 112233344445565666543111  11 000     


Q ss_pred             HHHHHHhccCC--CcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079          339 ELLKSMANKEY--GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG  416 (450)
Q Consensus       339 ~l~~~~~~~~~--g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~  416 (450)
                              +.+  |.|.++.+++++...+..+...+..   .|++. ..                           ...+
T Consensus       398 --------~vRg~G~Glm~gie~~~~~~~~~i~~~~~~---~Gvl~-~~---------------------------~g~~  438 (464)
T TIGR00699       398 --------NLRGKGRGTFIAWDTPDEAKRDKLLKKARN---NGVNI-GG---------------------------CGVK  438 (464)
T ss_pred             --------eecccCeEEEEEEecCCHHHHHHHHHHHHH---CCcEE-ec---------------------------CCCC
Confidence                    122  6789999999865556677777664   23221 10                           0136


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          417 LVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       417 ~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .|||+.. ..-+++.++.+.++|++.
T Consensus       439 ~ir~~Pp-l~it~~eid~~~~~l~~~  463 (464)
T TIGR00699       439 AIRLRPM-LVFQKHHADIFLEIISKI  463 (464)
T ss_pred             eEEEeCC-CCCCHHHHHHHHHHHHHh
Confidence            7999999 877788888877777653

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.45  E-value=2.4e-11  Score=113.02  Aligned_cols=284  Identities=17%  Similarity=0.203  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCC-chhHHHHHH---HhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTL-YGGTHALLT---HFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~-y~~~~~~~~---~~~~~~~g~~v~~  172 (450)
                      -+.+-.++|-++|+.  +++++.+   .+--++-++.+.+  .+|+.||++.-. |+.-...+.   ....  .|.++..
T Consensus        78 p~~lgdklApLiGA~~~Evvv~dt---ts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~--~~~~~~~  152 (407)
T COG3844          78 PERLGDKLAPLIGARAGEVVVTDT---TSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLG--IGYDLEG  152 (407)
T ss_pred             hhHHHHHhhhhhcCCCCceEEeCC---cchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhc--cccccee
Confidence            466788899999974  4677776   5555555555544  348888887643 333222222   2222  1333333


Q ss_pred             eCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCc
Q 013079          173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF  250 (450)
Q Consensus       173 v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~  250 (450)
                        .+.+.++++++ ++++.+|++.++|.-||...++.+|.++++++|++++-|-++  +.+..+.-..|+|+-+++.+|+
T Consensus       153 --~~~P~~~~~~~-~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKY  229 (407)
T COG3844         153 --VIAPRALEEAI-TDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKY  229 (407)
T ss_pred             --eeChHHHHHhh-ccceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeecee
Confidence              34778999999 899999999999999999999999999999999999999998  5555666666999999999999


Q ss_pred             cccCccceEEEEEcCHHHHH----HHHHHhh---------------hhhhccCCCchHHHHHHHHccCC-----cHHHHH
Q 013079          251 ISGGADIIAGAVCGPANLVN----SMMDLHQ---------------GALMLLGPTMNPKVAFELSERIP-----HLGLRM  306 (450)
Q Consensus       251 ~g~~g~~igG~l~~~~~~~~----~l~~~~~---------------~~~~~~g~~~~~~~a~~~~~~~~-----~l~~~~  306 (450)
                      +++...-++|+.+.++ ..+    ++..+..               +...+..++........+.-.++     .+.+..
T Consensus       230 LNgGPGapa~l~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR  308 (407)
T COG3844         230 LNGGPGAPAGLFVAPR-HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELR  308 (407)
T ss_pred             ccCCCCCceeEEeccc-cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHH
Confidence            9743333445444432 222    2211100               11111112222222211111221     144444


Q ss_pred             HHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013079          307 KEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~  382 (450)
                      ++-..+.+++++.++.+    +..+..|..     |          .-.|+-+++..+.   +.+.+.+|...   |+| 
T Consensus       309 ~kSlaLTd~fieLvEa~~~~~~l~l~tPr~-----~----------~~rGsqvS~~hp~---~~~V~qaLi~r---GVi-  366 (407)
T COG3844         309 KKSLALTDYFIELVEARCEYYGLTLVTPRA-----H----------EERGSQVSLYHPH---GYQVMQALIDR---GVI-  366 (407)
T ss_pred             HhhhHHHHHHHHHHHhccccCCcEEeccch-----h----------hhccceeeEecCc---HHHHHHHHHHc---Ccc-
Confidence            55566778888887765    235555541     1          1368889999985   34555665532   222 


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHh
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~  442 (450)
                         |.+                        -.++.|||.+..+    .|+-+.++.|.++|+..
T Consensus       367 ---gD~------------------------R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         367 ---GDF------------------------REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             ---ccc------------------------cCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence               111                        1257799887732    55666667777777654

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.43  E-value=3.2e-11  Score=114.55  Aligned_cols=203  Identities=18%  Similarity=0.220  Sum_probs=135.2

Q ss_pred             ccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh----C----CCeEEEecChHHHHHHHH
Q 013079           60 MSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G----TEAAYCTASDKAGMSAIS  131 (450)
Q Consensus        60 ~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~  131 (450)
                      |-+..+..|+.+..+...+.+...-| .-+.|.-++    .++-+|+.+|+++    |    ++.+++|.|   ++.|+.
T Consensus        79 p~lLd~~~fp~Dai~RA~~~L~~~gG-s~GaYS~Sq----Gv~~vR~~VA~~I~rRDG~p~~p~dI~LT~G---AS~ai~  150 (475)
T KOG0258|consen   79 PELLDSPEFPTDAIKRAKRILNDCGG-SLGAYSDSQ----GVPGVRKHVAEFIERRDGIPADPEDIFLTTG---ASPAIR  150 (475)
T ss_pred             hhhcCCCCCCHHHHHHHHHHHHhcCC-ccccccccc----CChhHHHHHHHHHHhccCCCCCHHHeeecCC---CcHHHH
Confidence            44555555655556788888877644 233343333    3445566666654    3    245899999   999999


Q ss_pred             HHHHHhc-cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE-eCC-----CCHHHHHHhhhc----CCceEEEEecCCC
Q 013079          132 SVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTTF-VDI-----SDHEMVNSAIVQ----GRTKVLYFESISN  200 (450)
Q Consensus       132 ~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~-v~~-----~d~~~l~~ai~~----~~t~lv~i~~~~N  200 (450)
                      .++..++ .+.+.|+++-|-|+-|...+..+.    +..+.| ++.     .|.++|++.+..    -++++++|.+|.|
T Consensus       151 ~il~l~~~~~~~GvliPiPQYPLYsAti~l~~----~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGN  226 (475)
T KOG0258|consen  151 SILSLLIAGKKTGVLIPIPQYPLYSATISLLG----GTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGN  226 (475)
T ss_pred             HHHHHHhcCCCCceEeecCCCchhHHHHHHhC----CcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCC
Confidence            9998775 456889999999998888775332    222322 221     278888877621    2678999999999


Q ss_pred             Cccccc---CHHHHHHHHHhcCCEEEEeCCCC-CCCCCc----------cCCC---C----eEEEeCCCCccccCccceE
Q 013079          201 PTLAVA---NIPELSRLAHDKGVTVVVDNTFS-PLVLSP----------ARLG---A----DVVVHSISKFISGGADIIA  259 (450)
Q Consensus       201 ptG~v~---~l~~I~~la~~~gi~livD~~~~-~~~~~~----------~~~g---~----di~~~S~sK~~g~~g~~ig  259 (450)
                      |||.+.   .+++|.++|+++++.++.|++|. .+....          .++|   .    -+..+|.||.+.+....-|
T Consensus       227 PTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RG  306 (475)
T KOG0258|consen  227 PTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRG  306 (475)
T ss_pred             ccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccC
Confidence            999995   58999999999999999999982 222110          0111   1    2567889999987655557


Q ss_pred             EEE-E-c-CHHHHHHHHH
Q 013079          260 GAV-C-G-PANLVNSMMD  274 (450)
Q Consensus       260 G~l-~-~-~~~~~~~l~~  274 (450)
                      |++ + . +++..+.+.+
T Consensus       307 GYmEv~n~~prv~~qi~K  324 (475)
T KOG0258|consen  307 GYMESLNRDPRVKQQIKK  324 (475)
T ss_pred             CeeecccCChhHHHHHHH
Confidence            997 2 2 3444444443

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.40  E-value=2.3e-11  Score=123.75  Aligned_cols=165  Identities=15%  Similarity=0.191  Sum_probs=107.3

Q ss_pred             hHHHHHHHHHHHhC-CCeEEEecChHHHHHHHHHHHHHhc-cCCC-EEEEe-CCCchhHHHHHHHhCCCccCe------e
Q 013079          100 TVLNLSRQMAALEG-TEAAYCTASDKAGMSAISSVLMQLC-SSGG-HVVAA-RTLYGGTHALLTHFFPRACNI------T  169 (450)
Q Consensus       100 ~~~~l~~~iA~l~g-~~~~~~tsg~~~gt~ai~~al~~l~-~~gd-~Vi~~-~~~y~~~~~~~~~~~~~~~g~------~  169 (450)
                      ...++.++|+++.. .+.++|++|   |+||+..|++... -.|+ +|+.. ...|++.............+.      .
T Consensus        89 ~~~~la~~l~~~~p~~~~v~f~~s---GseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~  165 (431)
T PRK06209         89 IELDAAESFLELIDGADMVKFCKN---GSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSAL  165 (431)
T ss_pred             HHHHHHHHHHHhCCccceEEEecC---HHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhcc
Confidence            33467888888774 468899999   9999999998542 2343 55554 344443211110000000111      1


Q ss_pred             EEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc------cCCCCe
Q 013079          170 TTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP------ARLGAD  241 (450)
Q Consensus       170 v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~------~~~g~d  241 (450)
                      +..++..|++++++++..  +++.+|++|++....+....+++|.++|++||+++|+||+++++....      ..+.+|
T Consensus       166 ~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PD  245 (431)
T PRK06209        166 TVTFRYNDIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPD  245 (431)
T ss_pred             ccccCCCCHHHHHHHHHhCCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcc
Confidence            233445689999988832  357789999876553333459999999999999999999985553321      122467


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNS  271 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~  271 (450)
                      +++  ++|.+|+ |.++ |++++++++++.
T Consensus       246 i~t--~gK~lgg-G~p~-~av~~~~~i~~~  271 (431)
T PRK06209        246 LSC--FGKALGN-GFAV-SALAGKREYMEL  271 (431)
T ss_pred             eee--ehhhhcC-Cccc-EEEEEHHHHHhh
Confidence            755  8999995 5666 888888887765

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.36  E-value=2.2e-10  Score=123.51  Aligned_cols=276  Identities=14%  Similarity=0.153  Sum_probs=182.0

Q ss_pred             hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc---cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +.+-+++..|+++.|.+  ++-+..+   +|++.++++++.-   +++++|++++..|+.+...++..... .|++++.+
T Consensus       109 e~l~e~Qt~i~eLtGm~~aNaSl~d~---atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~g~~v~~~  184 (939)
T TIGR00461       109 EALLNFQTVVSDLTGLPVANASLLDE---GTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKP-FGIEVIVV  184 (939)
T ss_pred             HHHHHHHHHHHHHHCCChhhhhccch---hhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHh-cCcEEEEE
Confidence            45567889999999976  4577778   7777776666532   22478999999999999888655544 79998887


Q ss_pred             CCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCcc
Q 013079          174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFI  251 (450)
Q Consensus       174 ~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~  251 (450)
                      +   +++|++.+   ++.+|++++|| -.|.+.|+++|++++|++|.+++++.-.  ..+..+|-++|+|+++++..++.
T Consensus       185 ~---~~~l~~~~---~~~~v~~q~Pn-~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg~~q~fg  257 (939)
T TIGR00461       185 D---CSDIKKAV---DVFGCLLQYPA-TDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLGSSQRFG  257 (939)
T ss_pred             c---HHHHhhcC---CEEEEEEECCC-CCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEeeCCCccC
Confidence            4   55666554   57788888885 5899999999999999999999997655  44456888999999988766653


Q ss_pred             c-----cCccceEEEEEcCHHHHHHHHHH--------------------hhhhhhc-cCC----CchHHHH-----HHHH
Q 013079          252 S-----GGADIIAGAVCGPANLVNSMMDL--------------------HQGALML-LGP----TMNPKVA-----FELS  296 (450)
Q Consensus       252 g-----~~g~~igG~l~~~~~~~~~l~~~--------------------~~~~~~~-~g~----~~~~~~a-----~~~~  296 (450)
                      -     ||+   +|++..++++...+-..                    |.+..++ -+.    +.....|     ++..
T Consensus       258 ~p~g~GGP~---aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~  334 (939)
T TIGR00461       258 VPMGYGGPH---AAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVY  334 (939)
T ss_pred             CCCCCCCCc---eeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHH
Confidence            3     444   58988887766544110                    0000001 111    1111111     1222


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079          297 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA  376 (450)
Q Consensus       297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~  376 (450)
                      .+-+.+.+..++...++.++.+.|.+.|.++..+.                   +=..+.+.++.. .++++.+.+... 
T Consensus       335 ~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~~-------------------fF~~~~v~~~~~-~~~~i~~~~~~~-  393 (939)
T TIGR00461       335 HGPKGLKNIARRIHSLTSILANGLENDPHELINKT-------------------WFDTLTVKVGNG-ISSELLKAAEEF-  393 (939)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-------------------ccceEEEEeCCC-CHHHHHHHHHHC-
Confidence            23344555555667788899999988777654332                   111455666422 245666666542 


Q ss_pred             cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                        | |-++.                           ..++.|++|+. ..+++++++.|.+++.
T Consensus       394 --g-i~l~~---------------------------~~~~~i~~s~~-E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       394 --N-INLRA---------------------------VDTTTVGIALD-ETTTKADVENLLKVFD  426 (939)
T ss_pred             --C-Ceeee---------------------------cCCCEEEEEee-cCCCHHHHHHHHHHhc
Confidence              1 22110                           11467999999 9889999999999885

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.35  E-value=5.3e-10  Score=109.80  Aligned_cols=283  Identities=11%  Similarity=0.018  Sum_probs=172.0

Q ss_pred             ChhHHHHHHHHHHHhCCC---eE-EEecChHHHHHHHHHHHHHhccCCCEEE-EeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079           98 NPTVLNLSRQMAALEGTE---AA-YCTASDKAGMSAISSVLMQLCSSGGHVV-AARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~---~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi-~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ....+++++.|.++++.+   .+ ++.+|   ||.+..+++..++.+||+++ +....+.+-...  ....+ .| ++..
T Consensus        48 ~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~Gg---gT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~--~ea~~-~g-~v~~  120 (364)
T PRK12462         48 SSLLAQAEADLRDLLGIPDEYGVVFLQGG---SSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAI--GEASR-VA-AMRV  120 (364)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEEecc---HHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHH--HHHHh-cC-CceE
Confidence            355688888999999862   34 55667   99999999999999998655 444444443322  22222 34 2332


Q ss_pred             eC---------CCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCe
Q 013079          173 VD---------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGAD  241 (450)
Q Consensus       173 v~---------~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~d  241 (450)
                      +.         ..+++++.  + .++.+.|++++-...+|...|     ++.+.+++++|+|.+-  +...++..+  .|
T Consensus       121 ~~~~~~~~~~~~p~~~~~~--~-~~d~~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~--~d  190 (364)
T PRK12462        121 VWDGAASGYRTLPSLAELD--W-DARAPFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEA--YG  190 (364)
T ss_pred             ecCcCCCCCCcCCCHHHhc--c-CCCCcEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHH--cc
Confidence            22         12455542  3 456788888776667788775     3333468999999984  222333333  49


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHH-------hhhh-hhccCCCchHHHHHHHHccC-----C--cHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDL-------HQGA-LMLLGPTMNPKVAFELSERI-----P--HLGLRM  306 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~-------~~~~-~~~~g~~~~~~~a~~~~~~~-----~--~l~~~~  306 (450)
                      ++..+..|.+|++|  + ++++.+++.+++....       +... .....++++....+.+...+     +  -++.+.
T Consensus       191 vi~agsQKnlgP~G--l-tvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~  267 (364)
T PRK12462        191 MVYAHAQKNLGPAG--V-TVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMR  267 (364)
T ss_pred             EEEeeccccCCCCc--e-EEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            99999999999888  4 6777787776554221       1100 00122344433333322222     2  456677


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      +++++.++.+.+.+.+.+.-...+..+   ..           ..-..+.|.+++.+...+|+...+..   |++.  +-
T Consensus       268 ~r~~~ka~~ly~~id~~~~~~~~~~~~---~~-----------RS~mnv~f~~~~~~l~~~f~~~a~~~---gl~~--lk  328 (364)
T PRK12462        268 DINARKAAMLYATLDALNEVIDCHAHR---AA-----------RSTMNVAFRFRQPRLDTLFKEQSTEA---GFCG--LS  328 (364)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCCCCh---hh-----------cCcceEEEEcCCHHHHHHHHHHHHHC---CCcc--cc
Confidence            888899999999998875211111111   10           01125788888777778898888753   3211  11


Q ss_pred             cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      +..                        +-+.+|+|+= -.-+.+.+++|.+-+++..+
T Consensus       329 Ghr------------------------~vgg~Ras~y-na~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        329 GHR------------------------SIGGIRASLY-NAVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             CCc------------------------ccCceEEEcC-CCCCHHHHHHHHHHHHHHHH
Confidence            111                        1255999987 77778888888888877654

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.34  E-value=7e-10  Score=116.77  Aligned_cols=145  Identities=13%  Similarity=0.129  Sum_probs=115.0

Q ss_pred             ChhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .-...++++..|+++|++.. ++|+|   .|.+|.+++.+++.+||.|++.+.+|.++...+.     +.|..++|+.+.
T Consensus       194 ~G~i~eAe~~AA~~fgAd~tyfvvNG---TS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLi-----lsga~PVYl~P~  265 (714)
T PRK15400        194 SGPHKEAEEYIARVFNADRSYMVTNG---TSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMM-----MSDVTPIYFRPT  265 (714)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCc---hHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-----HcCCeEEEeccc
Confidence            34678999999999999987 55677   7888999999999999999999999999988764     478888887643


Q ss_pred             ---------------CHHHHHHhhhc-CCce---EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCc-
Q 013079          177 ---------------DHEMVNSAIVQ-GRTK---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSP-  235 (450)
Q Consensus       177 ---------------d~~~l~~ai~~-~~t~---lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~-  235 (450)
                                     +.+.++++++. ++.+   .++|++| +--|.+.++++|+++|+.++  +++|++| +++.+.+ 
T Consensus       266 rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~  342 (714)
T PRK15400        266 RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPI  342 (714)
T ss_pred             ccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcc
Confidence                           37888888832 2333   6888777 45799999999999999887  6899998 4443332 


Q ss_pred             ------cCCCC---e--EEEeCCCCcccc
Q 013079          236 ------ARLGA---D--VVVHSISKFISG  253 (450)
Q Consensus       236 ------~~~g~---d--i~~~S~sK~~g~  253 (450)
                            ...|+   |  +++.|.||.+++
T Consensus       343 ~~~~sam~~ga~~~~~i~vtQStHKtL~a  371 (714)
T PRK15400        343 YEGKCGMSGGRVEGKVIYETQSTHKLLAA  371 (714)
T ss_pred             cCCcChhhcCCCCCCceEEEEchhhcccc
Confidence                  22355   4  999999999974

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.33  E-value=1e-09  Score=115.42  Aligned_cols=151  Identities=13%  Similarity=0.103  Sum_probs=116.5

Q ss_pred             ChhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .-...++++..|+++|++.. ++++|   .|.+|.+++.+++.+||.|++.+.+|.++...+.     +.|..++|+.+.
T Consensus       194 ~G~i~eAe~~aA~~fgAd~tyfvvNG---TS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLi-----lsga~PVYl~P~  265 (713)
T PRK15399        194 TGPHLEAEEYIARTFGAEQSYIVTNG---TSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLM-----MSDVVPIWLKPT  265 (713)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCC---hHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHH-----HcCCeeEEeccc
Confidence            34678999999999999987 55677   7889999999999999999999999999988764     478888887643


Q ss_pred             ----------C-----HHHHHHhhhc-CC---ceEEEEecCCCCcccccCHHHHHHHHHhcCCEE-EEeCCC-CCCCCCc
Q 013079          177 ----------D-----HEMVNSAIVQ-GR---TKVLYFESISNPTLAVANIPELSRLAHDKGVTV-VVDNTF-SPLVLSP  235 (450)
Q Consensus       177 ----------d-----~~~l~~ai~~-~~---t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~l-ivD~~~-~~~~~~~  235 (450)
                                +     .+.++++++. ++   +++++|++| +--|.+.++++|+++|   |+.+ ++|++| +++.+.+
T Consensus       266 ~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p  341 (713)
T PRK15399        266 RNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHP  341 (713)
T ss_pred             ccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCc
Confidence                      3     3888888832 22   257888887 4579999999999999   6766 699998 4444333


Q ss_pred             -------cCC--CCeEE---EeCCCCccccCccceEEEE
Q 013079          236 -------ARL--GADVV---VHSISKFISGGADIIAGAV  262 (450)
Q Consensus       236 -------~~~--g~di~---~~S~sK~~g~~g~~igG~l  262 (450)
                             ...  ++|.+   +.|.||.+++-.  -+.++
T Consensus       342 ~~~~~sam~~~~~aD~~i~~tQStHKtL~alT--QaS~i  378 (713)
T PRK15399        342 IYQGKSGMSGERVPGKVIFETQSTHKMLAAFS--QASLI  378 (713)
T ss_pred             ccCCcChhhCCCCCCeeeeeeeehhccccccc--hheee
Confidence                   112  46777   999999997533  44666

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.32  E-value=8.3e-10  Score=105.82  Aligned_cols=282  Identities=15%  Similarity=0.128  Sum_probs=147.1

Q ss_pred             ChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHH----Hh----cc---C-----CCEEEEeCCCchhHHHHHH
Q 013079           98 NPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLM----QL----CS---S-----GGHVVAARTLYGGTHALLT  159 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~----~l----~~---~-----gd~Vi~~~~~y~~~~~~~~  159 (450)
                      -..+.++|+.+|+++|.+  ++++..+     +++++...    ++    ..   |     .-+.+++.|.|.-....++
T Consensus        68 l~Gipe~r~l~a~llgv~~~~viv~gN-----SSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E  142 (425)
T PF12897_consen   68 LDGIPEARELFAELLGVPPENVIVGGN-----SSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITE  142 (425)
T ss_dssp             SS--HHHHHHHHHHHTS-GGGEEE-SS------HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHH
T ss_pred             cCChHHHHHHHHHHhCCCHHHEEEecc-----chHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHH
Confidence            446788999999999964  5555544     33333222    11    11   1     1268999999998888776


Q ss_pred             HhCCCccCeeEEEeCCC----CHHHHHHhhh-cCCceEEEEe-cCCCCcccccCHHHHHHHH----HhcCCEEEEeCCC-
Q 013079          160 HFFPRACNITTTFVDIS----DHEMVNSAIV-QGRTKVLYFE-SISNPTLAVANIPELSRLA----HDKGVTVVVDNTF-  228 (450)
Q Consensus       160 ~~~~~~~g~~v~~v~~~----d~~~l~~ai~-~~~t~lv~i~-~~~NptG~v~~l~~I~~la----~~~gi~livD~~~-  228 (450)
                           .+|++...|+..    |.|.+++.+. ++..|.+++- .-+||||.+..=+-+.+++    ...+..++-|++| 
T Consensus       143 -----~~Giemi~VpM~~dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~  217 (425)
T PF12897_consen  143 -----HFGIEMIPVPMTEDGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYA  217 (425)
T ss_dssp             -----HCT-EEEEEEEETTEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTT
T ss_pred             -----hhCcEEEecCCCCCCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCce
Confidence                 379888888754    9999999883 4567777764 5689999998766555555    3469999999998 


Q ss_pred             -CCCCCC-c----cCC----------CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH
Q 013079          229 -SPLVLS-P----ARL----------GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA  292 (450)
Q Consensus       229 -~~~~~~-~----~~~----------g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a  292 (450)
                       -++..+ +    ..+          +..++..|.||+-- +|..| +++.+++..++.+.+... ..+....-++|..-
T Consensus       218 vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf-~GaGv-a~~aaS~~Nl~~~~~~~~-~~tIgpdKvNQLRH  294 (425)
T PF12897_consen  218 VHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITF-PGAGV-AFFAASEANLAWIKKHLS-VQTIGPDKVNQLRH  294 (425)
T ss_dssp             T-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS--EEEEE-HHHHHHHHHHHH-HH-S---HHHHHHH
T ss_pred             EeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccccc-CCcce-eeeecCHHHHHHHHHHhc-CceeCccHHHHHHH
Confidence             333211 1    111          46799999999866 44447 888888877777665433 11122233555544


Q ss_pred             HHHHccCC-cHHHHHHHH----HHHHHHHHHHHHh-----CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          293 FELSERIP-HLGLRMKEH----CHRALIFARRMKK-----LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       293 ~~~~~~~~-~l~~~~~~~----~~~~~~l~~~L~~-----~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      ...+...+ .+...++++    +-+.+.+.+.|.+     .+. .+..|.                   .|.+++|+...
T Consensus       295 vrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~-------------------GGYFIsld~~~  355 (425)
T PF12897_consen  295 VRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK-------------------GGYFISLDVLD  355 (425)
T ss_dssp             HHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S-------------------BSS-EEEEEST
T ss_pred             HHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC-------------------CceEEEEecCC
Confidence            44444544 455555554    2333344444432     233 455554                   68899999875


Q ss_pred             HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      . .+.+.++..+.   .|+.-...|.+.-...                  .-.+..|||... ....+++-.+
T Consensus       356 G-~AkrvV~lake---AGV~LT~AGAtfPyg~------------------DP~D~nIRiAPS-~P~leel~~A  405 (425)
T PF12897_consen  356 G-TAKRVVELAKE---AGVALTPAGATFPYGK------------------DPRDSNIRIAPS-YPSLEELETA  405 (425)
T ss_dssp             T--HHHHHHHHHH---TTEE---TTTTSGGG--------------------TTS-EEEE--S-SS-HHHHHHH
T ss_pred             C-hHHHHHHHHHH---hCceeCCCCCCCCCCC------------------CCCCCcEEecCC-CCCHHHHHHH
Confidence            4 26667766664   2322222232211110                  112567999999 7666665443

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.31  E-value=1.6e-09  Score=104.82  Aligned_cols=282  Identities=17%  Similarity=0.189  Sum_probs=182.1

Q ss_pred             hHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc--c-CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079          100 TVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC--S-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~--~-~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .+-+++..++++.|-+  ++-+.-+   +|++-++++++.-  + +.++++++...|+.+...++..... .|+++..++
T Consensus       121 aLfefQtlv~dLTGm~VANASm~De---aTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~-~g~~i~~~~  196 (450)
T COG0403         121 ALFEFQTLVADLTGLDVANASMLDE---ATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEG-LGIEIEVVD  196 (450)
T ss_pred             HHHHHHHHHHHHhCCCcccchhhhh---HHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhccc-CceEEEEec
Confidence            3457788899999864  3455556   6776666665542  2 2478999999999999999766554 799999999


Q ss_pred             CCCHHHHHHhhhcCCceEEEEecCCCCcc-cccCHHHHHHHHHhcCCEEEEeC--CCCCCCCCccCCCCeEEEeCCCCc-
Q 013079          175 ISDHEMVNSAIVQGRTKVLYFESISNPTL-AVANIPELSRLAHDKGVTVVVDN--TFSPLVLSPARLGADVVVHSISKF-  250 (450)
Q Consensus       175 ~~d~~~l~~ai~~~~t~lv~i~~~~NptG-~v~~l~~I~~la~~~gi~livD~--~~~~~~~~~~~~g~di~~~S~sK~-  250 (450)
                      .+|+++++++ ...++..|++++|+ -.| .+.++.+|.+.+|++|.++++=.  .--.+...|-++|+|++++|..-+ 
T Consensus       197 ~~d~~~l~~~-~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfG  274 (450)
T COG0403         197 ADDLDDLESA-DDGDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFG  274 (450)
T ss_pred             cchhhhhhhc-cccCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccC
Confidence            9999999887 36689999999997 466 66789999999999998877632  223445578889999999999876 


Q ss_pred             ----cccCccceEEEEEcCHHHHHHH-------------------------HHHhhhhhhccCCCchHH-----HHHHHH
Q 013079          251 ----ISGGADIIAGAVCGPANLVNSM-------------------------MDLHQGALMLLGPTMNPK-----VAFELS  296 (450)
Q Consensus       251 ----~g~~g~~igG~l~~~~~~~~~l-------------------------~~~~~~~~~~~g~~~~~~-----~a~~~~  296 (450)
                          ||||.   +|++..++++..++                         ...|+.-.+++-++....     ..++..
T Consensus       275 vPmgfGGPh---ag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~  351 (450)
T COG0403         275 VPMGFGGPH---AGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVY  351 (450)
T ss_pred             CCcCCCCcc---eeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHH
Confidence                44443   48887777665433                         001111111111111111     112233


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHhCC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          297 ERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      .+.+-+.+..++..+...+++++|++.+  .++.....            ++       .+.++++. +....++.+...
T Consensus       352 hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~f------------Fd-------t~~v~~~~-~~~~~l~~~~~~  411 (450)
T COG0403         352 HGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHF------------FD-------TFTVRVPE-EVAEALLAAAIA  411 (450)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccc------------ee-------eEEEecch-hHHHHHHHHHHh
Confidence            3444566666677888899999999665  44432210            00       45566653 335566655443


Q ss_pred             cccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                            -++.++                         .++.+.+=||+- ..++++.++.|.+++...
T Consensus       412 ------~G~~L~-------------------------~~~~~~~~ia~t-Et~t~~~i~~l~~~~~~~  447 (450)
T COG0403         412 ------GGINLR-------------------------RVDADTVLIALT-ETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             ------cCCcee-------------------------eecCCceEEEee-cccCHHHHHHHHHHHhhh
Confidence                  122332                         112345666777 667788899998887654

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.27  E-value=9.2e-10  Score=109.34  Aligned_cols=214  Identities=18%  Similarity=0.176  Sum_probs=131.0

Q ss_pred             hhHHHHHHHHHHHhCCCeE--EEecChHHHHHHHHHHHHHh---ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEGTEAA--YCTASDKAGMSAISSVLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~--~~tsg~~~gt~ai~~al~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +.+-+++..|+++.|-+-+  -+..+   ++++-.+++.+.   -+.+++|+++...|+.+...++.+... .|++++.+
T Consensus       110 q~lfe~Qs~i~eLTGmdvaNaSlyd~---atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~-~g~~iv~~  185 (429)
T PF02347_consen  110 QALFEYQSMICELTGMDVANASLYDG---ATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAP-LGIEIVEV  185 (429)
T ss_dssp             HHHHHHHHHHHHHHTSSEE-SEBSSC---CHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCH-CCEEEEEE
T ss_pred             HHHHHHHHHHHHhhCCCccCCCCCCh---hHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhh-CCeEEEEe
Confidence            4457899999999998754  45556   444444443332   233469999999999999888766654 79999888


Q ss_pred             CCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC---CCCCCCccCCCCeEEEeCCCCc
Q 013079          174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF---SPLVLSPARLGADVVVHSISKF  250 (450)
Q Consensus       174 ~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~---~~~~~~~~~~g~di~~~S~sK~  250 (450)
                      +.++-..    ...+++.+|++++|| -.|.+.++++|.+++|++|.++++ .+-   -....+|.++|+|+++++ +|.
T Consensus       186 ~~~~~~~----~d~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~  258 (429)
T PF02347_consen  186 PLDEDGT----TDDDDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQT  258 (429)
T ss_dssp             -BBTTCS----B-STTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTT
T ss_pred             cccccCC----ccccCeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCC
Confidence            7542111    105789999999997 479999999999999999999987 543   223457888999999877 887


Q ss_pred             cccC---ccceEEEEEcCHHHHHHHHHH-------------------------hhhh-hhccCCC--chH--HHHHHHHc
Q 013079          251 ISGG---ADIIAGAVCGPANLVNSMMDL-------------------------HQGA-LMLLGPT--MNP--KVAFELSE  297 (450)
Q Consensus       251 ~g~~---g~~igG~l~~~~~~~~~l~~~-------------------------~~~~-~~~~g~~--~~~--~~a~~~~~  297 (450)
                      ||.|   |++-.|++..++++...+-..                         ++.- ..+.++.  +..  ..+++...
T Consensus       259 fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~  338 (429)
T PF02347_consen  259 FGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYL  338 (429)
T ss_dssp             TT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHH
T ss_pred             CcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHh
Confidence            7643   333348888887766544110                         1100 0011111  111  12333444


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          298 RIPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       298 ~~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      +.+-+.+..++...++.++.+.|.+.
T Consensus       339 G~~GL~~iA~~~~~~A~yl~~~L~~~  364 (429)
T PF02347_consen  339 GPEGLREIAERIHLNAHYLAERLKKI  364 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55667777777888999999999886

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.24  E-value=1.1e-11  Score=119.24  Aligned_cols=164  Identities=24%  Similarity=0.303  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCC---CchhHHHHHHHhCCCccCeeEEEeCCC--
Q 013079          102 LNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAART---LYGGTHALLTHFFPRACNITTTFVDIS--  176 (450)
Q Consensus       102 ~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~---~y~~~~~~~~~~~~~~~g~~v~~v~~~--  176 (450)
                      ..+++.++.+.|++.++++++   ...|+.+++..++ +|.+||++.-   ++++....- +.... .|.+.+.|-..  
T Consensus        50 ~~v~~ll~~ltgAeaA~VvNn---naAAv~L~l~~la-~~~EvIvsRGelVeiGgsFRip-~vm~~-sGa~lvEVGttN~  123 (367)
T PF03841_consen   50 AHVEELLCELTGAEAALVVNN---NAAAVLLALNTLA-KGKEVIVSRGELVEIGGSFRIP-DVMRQ-SGARLVEVGTTNR  123 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccc---ccccccccccccc-cccccccccccccccccccccc-ccccc-ccccccccccccc
Confidence            456778899999999999999   9999998888775 4678888874   445433221 33333 57666665443  


Q ss_pred             -CHHHHHHhhhcCCceEEEEecCCCCc--ccc--cCHHHHHHHHHhcCCEEEEeCCCCC------C-------CCCccCC
Q 013079          177 -DHEMVNSAIVQGRTKVLYFESISNPT--LAV--ANIPELSRLAHDKGVTVVVDNTFSP------L-------VLSPARL  238 (450)
Q Consensus       177 -d~~~l~~ai~~~~t~lv~i~~~~Npt--G~v--~~l~~I~~la~~~gi~livD~~~~~------~-------~~~~~~~  238 (450)
                       .+++.+++| +++|.+++--+++|-.  |..  .+++++++++++|++++++|..-+.      +       .....+.
T Consensus       124 t~~~Dye~AI-~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~  202 (367)
T PF03841_consen  124 THLSDYEKAI-TENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAA  202 (367)
T ss_dssp             --------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCC
T ss_pred             cccccccccc-cccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhc
Confidence             578899999 9999988776766653  323  5899999999999999999976411      1       1233456


Q ss_pred             CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH
Q 013079          239 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL  275 (450)
Q Consensus       239 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~  275 (450)
                      |+|++++|.-|.+|+|-   +|+++++++++++++..
T Consensus       203 GaDlV~fSGdKlLGGPQ---aGiI~Gkk~lI~~lk~~  236 (367)
T PF03841_consen  203 GADLVTFSGDKLLGGPQ---AGIIVGKKELIEKLKKH  236 (367)
T ss_dssp             T-SEEEEETTSSSSS-S----EEEEEEHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCCCCC---eEEEEeCHHHHHHHhhC
Confidence            99999999999999886   59999999999988653

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.23  E-value=9e-10  Score=106.91  Aligned_cols=160  Identities=26%  Similarity=0.280  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeC-----CCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079          102 LNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAAR-----TLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus       102 ~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-----~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+.+..+.+.+++.+++++.   .+.|+.+++.++.. +.+|+++.     +.++.+...+.     ..|.++..+...
T Consensus        71 ~~~~~~~~~~~~aea~~ivnn---n~aAVll~~~al~~-~~EvVis~g~lV~gg~~~v~d~~~-----~aG~~l~EvG~t  141 (395)
T COG1921          71 TELAELLCGLTGAEAAAIVNN---NAAAVLLTLNALAE-GKEVVVSRGELVEGGAFRVPDIIR-----LAGAKLVEVGTT  141 (395)
T ss_pred             HHHHHHHhcccchhheeeECC---cHHHHHHHHhhhcc-CCeEEEEccccccCCCCChhHHHH-----HcCCEEEEeccc
Confidence            355556666667888999999   89999988888766 45565544     24455555554     367777766543


Q ss_pred             ---CHHHHHHhhhcCCceEEEEecCCCCcccc--cCHHHHHHHHHhcCCEEEEeCCCCCC-----C-CCccCCCCeEEEe
Q 013079          177 ---DHEMVNSAIVQGRTKVLYFESISNPTLAV--ANIPELSRLAHDKGVTVVVDNTFSPL-----V-LSPARLGADVVVH  245 (450)
Q Consensus       177 ---d~~~l~~ai~~~~t~lv~i~~~~NptG~v--~~l~~I~~la~~~gi~livD~~~~~~-----~-~~~~~~g~di~~~  245 (450)
                         ...+++.+| .++|++++=-+-+|- |..  .++++++++||++|+++++|.+-+..     . ......|+|+|++
T Consensus       142 n~t~~~d~~~AI-ne~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~  219 (395)
T COG1921         142 NRTHLKDYELAI-NENTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSF  219 (395)
T ss_pred             CcCCHHHHHHHh-ccCCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEE
Confidence               788999999 888887554333332 333  57888999999999999999986332     1 1234559999999


Q ss_pred             CCCCccccCccceEEEEEcCHHHHHHHHHH
Q 013079          246 SISKFISGGADIIAGAVCGPANLVNSMMDL  275 (450)
Q Consensus       246 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~  275 (450)
                      |..|.+++|-   +|++++++++++.++..
T Consensus       220 SgdKllgGPq---aGii~GkKelI~~lq~~  246 (395)
T COG1921         220 SGDKLLGGPQ---AGIIVGKKELIEKLQSH  246 (395)
T ss_pred             ecchhcCCCc---cceEechHHHHHHHHhh
Confidence            9999999885   69999999999888654

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=6.3e-10  Score=105.96  Aligned_cols=153  Identities=20%  Similarity=0.308  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHH
Q 013079          101 VLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEM  180 (450)
Q Consensus       101 ~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~  180 (450)
                      .-.+++.||+++|++..++.+-   |-.+++.++.++++.||.|++......+....++     +.--.+.+...+|.++
T Consensus       141 HldlE~~iakF~G~E~aivYs~---gF~ti~S~ipafsKrGDIi~~de~~nfaIq~Glq-----lSRS~i~~Fkhndm~~  212 (467)
T KOG1358|consen  141 HLDLEKRIAKFMGTEDAIVYSY---GFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQ-----LSRSTISYFKHNDMED  212 (467)
T ss_pred             ecccHHHHHHhhCCcceeeecc---ccchhhhcchhhhccCcEEEEehhhhHHHHHHHh-----hhhheeEEecCCCHHH
Confidence            4579999999999999999999   9999999999999999999888877776666554     1233567777889999


Q ss_pred             HHHhhhcCCc-------------eEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCC---------Ccc
Q 013079          181 VNSAIVQGRT-------------KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVL---------SPA  236 (450)
Q Consensus       181 l~~ai~~~~t-------------~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~---------~~~  236 (450)
                      +++.+ .+++             +.|+++...-++|.+.|+.+|.++..++...+++|+.+  +-+..         ...
T Consensus       213 lerll-~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~  291 (467)
T KOG1358|consen  213 LERLL-PEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVP  291 (467)
T ss_pred             HHHhc-cCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCC
Confidence            98876 3322             46778888889999999999999999999999999997  22221         111


Q ss_pred             CCCCeEEEeCCCCccccCccceEEEEEcCH
Q 013079          237 RLGADVVVHSISKFISGGADIIAGAVCGPA  266 (450)
Q Consensus       237 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~  266 (450)
                      .-.+|++++|+.-.++..    ||+.+++.
T Consensus       292 ~~~iDiv~~sm~~alas~----GgFc~G~~  317 (467)
T KOG1358|consen  292 ITDIDIVTASMETALASG----GGFCAGKS  317 (467)
T ss_pred             ccceeeeeeccccccccc----Cceeecce
Confidence            114799999999999865    47877754

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.18  E-value=4e-09  Score=110.13  Aligned_cols=225  Identities=17%  Similarity=0.114  Sum_probs=144.8

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCCCe--EEEecChHHHHHHHHHHHHHhcc---------C-------------------
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGTEA--AYCTASDKAGMSAISSVLMQLCS---------S-------------------  140 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~~~--~~~tsg~~~gt~ai~~al~~l~~---------~-------------------  140 (450)
                      +..+..+...-+++-+.+++++|-+.  -+||+|   ||+||..++.....         .                   
T Consensus       115 ~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsG---GT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~  191 (608)
T TIGR03811       115 YESSPATSQMEEEVGKEFATLMGYKNGWGHIVAD---GSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPT  191 (608)
T ss_pred             cccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCC---hHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccc
Confidence            33444334444667778888888643  589999   99999987754311         0                   


Q ss_pred             ------------------------C------CEEEEeCCCchhHHHHHHHhCCCccCe---eEEEeCCC-----CHHHHH
Q 013079          141 ------------------------G------GHVVAARTLYGGTHALLTHFFPRACNI---TTTFVDIS-----DHEMVN  182 (450)
Q Consensus       141 ------------------------g------d~Vi~~~~~y~~~~~~~~~~~~~~~g~---~v~~v~~~-----d~~~l~  182 (450)
                                              |      ..++++...|.++...+.     ++|+   .++.|+++     |+++|+
T Consensus       192 ~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~-----ilGlG~~~vv~VpvD~~~rmd~~~L~  266 (608)
T TIGR03811       192 KEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAAD-----IIGIGLDQVIPVPVDSNYRMDINELE  266 (608)
T ss_pred             ccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHH-----HcCCCcccEEEeecCCCCcCCHHHHH
Confidence                                    0      057788888999988875     3444   35666654     899998


Q ss_pred             Hhhhc---C--CceEEEEecCCCCcccccCHHHHHHHH---HhcCC--EEEEeCCCCCCC----CC------cc------
Q 013079          183 SAIVQ---G--RTKVLYFESISNPTLAVANIPELSRLA---HDKGV--TVVVDNTFSPLV----LS------PA------  236 (450)
Q Consensus       183 ~ai~~---~--~t~lv~i~~~~NptG~v~~l~~I~~la---~~~gi--~livD~~~~~~~----~~------~~------  236 (450)
                      ++|++   .  .+-+|+....+..+|.+-|+++|+++|   +++|+  ++|||++|+++.    .+      |.      
T Consensus       267 ~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~  346 (608)
T TIGR03811       267 KIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEV  346 (608)
T ss_pred             HHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcc
Confidence            88832   1  234455566788999999999999999   66887  699999996532    11      00      


Q ss_pred             -----------------------CC-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh-----hh--------
Q 013079          237 -----------------------RL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----GA--------  279 (450)
Q Consensus       237 -----------------------~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-----~~--------  279 (450)
                                             .+ .+|-++...||++..|-. .|++++.++.+.+.+.....     +.        
T Consensus       347 ~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~-~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~  425 (608)
T TIGR03811       347 HAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYS-AGGIVIQDIRMRDVISYFATYVFEKGADIPALLGA  425 (608)
T ss_pred             cccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCC-eEEEEEeCHHHHHHHhcCcchhccccccCcccccc
Confidence                                   01 589999999999886643 43455666655443321100     00        


Q ss_pred             hhccCCCch--HHHHHHHHccC----CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          280 LMLLGPTMN--PKVAFELSERI----PHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       280 ~~~~g~~~~--~~~a~~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      ....|.-+.  ....|+..+.+    +.+.+.+.+..++++++.+.|++.+
T Consensus       426 ~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~  476 (608)
T TIGR03811       426 YILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLE  476 (608)
T ss_pred             cceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            011222222  33444444332    3466778888899999999998864

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.14  E-value=4e-09  Score=106.95  Aligned_cols=153  Identities=18%  Similarity=0.231  Sum_probs=118.5

Q ss_pred             hhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-
Q 013079           99 PTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-  176 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-  176 (450)
                      -...++++..|+.+|++.. ++++|   .+.||..++.+++.+||.|++.+++|.+....+.     +.|....|+... 
T Consensus        70 G~i~eAqe~aA~~fgAd~tyFvvNG---TS~ank~vi~a~~~~GD~VLvdRN~HKSi~~gli-----laGa~Pvyl~p~~  141 (557)
T COG1982          70 GPIKEAQELAARVFGADHTYFVVNG---TSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLI-----LAGATPVYLEPSR  141 (557)
T ss_pred             ccHHHHHHHHHHHhCCCceEEEECC---ccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHH-----HcCCceEEecCCC
Confidence            3578999999999999977 45666   7788889999999999999999999999888764     367777776543 


Q ss_pred             ----------CHHHHHHhhhc-CCc-eEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCC------ccC
Q 013079          177 ----------DHEMVNSAIVQ-GRT-KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS------PAR  237 (450)
Q Consensus       177 ----------d~~~l~~ai~~-~~t-~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~------~~~  237 (450)
                                +.+.+++++.+ +.. +++++.+|+. -|.+.++++|.++++..++++.+|++. ..+...      ..+
T Consensus       142 np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~  220 (557)
T COG1982         142 NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALN  220 (557)
T ss_pred             CccccccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhh
Confidence                      67888777633 344 7777766643 699999999999999999999999996 333222      122


Q ss_pred             CCCeEEEeCCCCccccCccceEEEE
Q 013079          238 LGADVVVHSISKFISGGADIIAGAV  262 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l  262 (450)
                      .++|+++.|.||.+++-.  .+..+
T Consensus       221 ~~~~~~tqS~HK~l~alS--QaS~i  243 (557)
T COG1982         221 GGADFVTQSTHKLLAALS--QASMI  243 (557)
T ss_pred             cCceEEEechhhhhhhhh--hhHHH
Confidence            489999999999998432  43455

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.13  E-value=7.1e-09  Score=101.19  Aligned_cols=287  Identities=13%  Similarity=0.108  Sum_probs=175.0

Q ss_pred             HHHHHHHHHHHhCCCeE---EEecChHHHHHHHHHHHHHhc---cC--C---CEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079          101 VLNLSRQMAALEGTEAA---YCTASDKAGMSAISSVLMQLC---SS--G---GHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus       101 ~~~l~~~iA~l~g~~~~---~~tsg~~~gt~ai~~al~~l~---~~--g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      -.+.-..++.++++.+.   ..|+|   |++++.++-+...   ..  |   ..|+++...+.++..    +.. .++++
T Consensus       122 e~~~Vnm~~~L~~~~~~~~g~~t~G---~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK----~a~-yf~v~  193 (491)
T KOG1383|consen  122 EAECVNMIANLFNAPSDSCGCGTVG---GSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEK----AAR-YFEVE  193 (491)
T ss_pred             HHHHHHHHHHHhcCCccccCccccc---cchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHH----HHh-hEEEE
Confidence            34445567777876543   67888   9999665554431   11  2   245555544444433    333 37788


Q ss_pred             EEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh-cCCEEEEeCCCCCCCCC-----c--
Q 013079          170 TTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPLVLS-----P--  235 (450)
Q Consensus       170 v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~~~~-----~--  235 (450)
                      +..|+++      |+..+.+.+ +++|.+|+.+.++-|+|.+.|+++|.++..+ +++++|+|.+-++|...     +  
T Consensus       194 l~~V~~~~~~~~~D~~k~~~~i-~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~  272 (491)
T KOG1383|consen  194 LREVPLDEGDYRVDPGKVVRMI-DENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEE  272 (491)
T ss_pred             EEeeeccccceEecHHHHHHHh-ccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccc
Confidence            8777765      899999999 9999999999999999999999999999999 99999999997666431     1  


Q ss_pred             cCC---CCeEEEeCCCCccc-cCccceEEEE-EcCHHHH-HHHH---HHhh---hhhhccCCCch--HHHHHH--HHccC
Q 013079          236 ARL---GADVVVHSISKFIS-GGADIIAGAV-CGPANLV-NSMM---DLHQ---GALMLLGPTMN--PKVAFE--LSERI  299 (450)
Q Consensus       236 ~~~---g~di~~~S~sK~~g-~~g~~igG~l-~~~~~~~-~~l~---~~~~---~~~~~~g~~~~--~~~a~~--~~~~~  299 (450)
                      .++   +..-++.+.||+.- ++|  + +|+ ..++++. .++.   .+..   ...+..|+-++  ..++|+  ...+.
T Consensus       273 fdFr~p~V~Sisa~~HKYGl~~~G--~-~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~  349 (491)
T KOG1383|consen  273 FDFRVPGVTSISADGHKYGLAPAG--S-SWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGE  349 (491)
T ss_pred             cccCCCCceeEeeccceeeeeecC--c-EEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhH
Confidence            122   56677888999844 555  4 555 4554433 2221   1111   01111222121  223333  33355


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhccc
Q 013079          300 PHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYA  376 (450)
Q Consensus       300 ~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~  376 (450)
                      +...+..++..+....|.+.+++.+. .+..+.                      .++|.+.+  .....++-+.|..  
T Consensus       350 eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp----------------------~vs~~~~~s~~~~i~elsd~l~~--  405 (491)
T KOG1383|consen  350 EGYRENTQNIVETARKLREGIENIKGIKIVGKP----------------------LVSFILFGSNDVNIFELSDLLRK--  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccceecCCC----------------------cEEEEEccCCccchhhhhHHHHh--
Confidence            66777888888999999999988643 443322                      45555442  1123344445543  


Q ss_pred             cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013079          377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~  447 (450)
                       +|.+--.      + ..|+               ++--...|+.+- .+=.++++.++.+++.++...|.
T Consensus       406 -~GW~lna------l-q~P~---------------a~Hi~vt~~~~~-~~~A~~~v~Di~~~~~el~~~p~  452 (491)
T KOG1383|consen  406 -KGWILNA------L-QFPA---------------AIHICVTRVHAR-EDVADRFVADIRKVVEELKSLPE  452 (491)
T ss_pred             -cCcCccc------c-CCCC---------------ceEEEEEeeecc-HHHHHHHHHHHHHHHHHHHhCCC
Confidence             3332211      1 1111               011134666666 44468889999999999987765

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.08  E-value=3.2e-09  Score=97.85  Aligned_cols=292  Identities=13%  Similarity=0.155  Sum_probs=167.2

Q ss_pred             hHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCcc----Ce-eEEE
Q 013079          100 TVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRAC----NI-TTTF  172 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~----g~-~v~~  172 (450)
                      .++-++...+.+-+-+-++|++|   |+||+.++++...  .....+|+.+..|++........-+..+    ++ +..|
T Consensus        88 lv~cA~~l~stlPeLsvc~F~NS---GSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~  164 (452)
T KOG1403|consen   88 LVQCARTLTSTLPELSVCFFVNS---GSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDY  164 (452)
T ss_pred             HHHHHHHHhhcCCCceEEEEecC---CchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCcCCCce
Confidence            44444555555555566899999   9999999997542  2234577778888876654322211101    11 2233


Q ss_pred             eCCC------------------C-----HHHHHHhhhc-----CCceEEEEecCCCCcccccC----HHHHHHHHHhcCC
Q 013079          173 VDIS------------------D-----HEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV  220 (450)
Q Consensus       173 v~~~------------------d-----~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi  220 (450)
                      |.+.                  |     .+.+++.+++     ....+.+-++.++=.|.+.|    .+++++..+.+|-
T Consensus       165 VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGG  244 (452)
T KOG1403|consen  165 VHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGG  244 (452)
T ss_pred             eEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCC
Confidence            2210                  1     1234443311     13445555777777787755    6789999999999


Q ss_pred             EEEEeCCCCCCCC--------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccC-CCchHHH
Q 013079          221 TVVVDNTFSPLVL--------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG-PTMNPKV  291 (450)
Q Consensus       221 ~livD~~~~~~~~--------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g-~~~~~~~  291 (450)
                      ++|.||+|.+|..        ....+-.|+++  +.|-+| .|-++ +.++..+++.+.+....-++....| +..+...
T Consensus       245 v~IaDEVQvGFGRvG~hyWafq~y~fiPDIVt--mgKpmG-NGhPV-a~VattkeIA~Af~atgv~YFNTyGGnPVsCAv  320 (452)
T KOG1403|consen  245 VCIADEVQVGFGRVGSHYWAFQTYNFIPDIVT--MGKPMG-NGHPV-AAVATTKEIAQAFHATGVEYFNTYGGNPVSCAV  320 (452)
T ss_pred             eEEeehhhhcccccchhhhhhhhhccccchhe--ecccCC-CCCee-eEEeccHHHHHHhccccceehhccCCCchhHHH
Confidence            9999999855531        11223468887  899998 67778 8888999998888653222322344 4444444


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHH
Q 013079          292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEE  363 (450)
Q Consensus       292 a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~  363 (450)
                      ..+.++-.+. +.......+..++|...|+++..+...-+               +.+|.|.++.+++-        ...
T Consensus       321 ~laVm~v~e~-E~Lq~ha~~vG~~L~~lL~~~k~kh~~IG---------------DvRGvGLFiGIdLVkD~~tRtP~tk  384 (452)
T KOG1403|consen  321 GLAVMRVCED-ENLQEHAQQVGEKLEVLLRRLKQKHECIG---------------DVRGVGLFIGIDLVKDRKTRTPDTK  384 (452)
T ss_pred             HHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhhhcccee---------------ccccceEEEeeeeecccccCCCcHH
Confidence            4333332221 11112223344455555554432211111               34578889999874        223


Q ss_pred             HHHHHHHHhhcccccccccccc-ccccccccccccccCCCCCHHHHHhcCCCCCeEE----EEeCCCCCHHHHHHHHHHH
Q 013079          364 KANRLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVR----MSVGYLGTLDQRWSQFEKA  438 (450)
Q Consensus       364 ~~~~~~~~l~~~~~~g~i~vs~-G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iR----iS~g~~~~~~~~i~~l~~a  438 (450)
                      .+..++.+|+.  .++ +..|. |...                          +.+.    ++|. .++.++.+..|.++
T Consensus       385 ~A~~~v~rlke--~y~-VLlsaDGPh~--------------------------NilKiKPPmCFn-eena~e~v~~ld~i  434 (452)
T KOG1403|consen  385 EAHWVVNRLKE--LYR-VLLSADGPHR--------------------------NILKIKPPMCFN-EENADEFVLGLDEI  434 (452)
T ss_pred             HHHHHHHHHHH--hhh-EEEecCCCCC--------------------------ceeecCCCcccC-hhhHHHHHHHHHHH
Confidence            35566677765  233 23332 2111                          2222    3566 88999999999999


Q ss_pred             HHHhhh
Q 013079          439 LSRMQD  444 (450)
Q Consensus       439 l~~~~~  444 (450)
                      |.-+.+
T Consensus       435 LT~mee  440 (452)
T KOG1403|consen  435 LTVMEE  440 (452)
T ss_pred             HHHHHH
Confidence            986644

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=99.05  E-value=9e-09  Score=97.51  Aligned_cols=288  Identities=15%  Similarity=0.161  Sum_probs=147.6

Q ss_pred             hhHHHHHHHHHHHh---C-----CCeEEEecChHHHHHHHHHHHHHhccC----C--CEEEEeCCCchhHHHHHHHhCCC
Q 013079           99 PTVLNLSRQMAALE---G-----TEAAYCTASDKAGMSAISSVLMQLCSS----G--GHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus        99 ~~~~~l~~~iA~l~---g-----~~~~~~tsg~~~gt~ai~~al~~l~~~----g--d~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      -...+|++.|-++.   |     ...++|.+|   +|+-+++++.+|...    +  -+|+...|.|+.+.... .++..
T Consensus        43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtG---sTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-~~f~s  118 (363)
T PF04864_consen   43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTG---STQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-DFFDS  118 (363)
T ss_dssp             TS-HHHHHHHHHHHHHH-SB--TTSEEEEECH---HHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-CCT-B
T ss_pred             eccHHHHHHHHHHHHHhccccccCcEEEEcCC---HHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-Hhccc
Confidence            34566777776665   3     235899999   999999999988533    1  27999999999887765 34332


Q ss_pred             ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeE
Q 013079          165 ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADV  242 (450)
Q Consensus       165 ~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di  242 (450)
                       ..  ..|-.  |.......= ...+-+=+|++||||.|.+..  .   +++.-+..+|-|-+|  .++.--+...+-|+
T Consensus       119 -~~--y~w~G--da~~~~~~~-~~~~~IElVTSPNNPDG~lr~--~---V~~g~~~k~I~D~AYYWPhyTpI~~~aD~Di  187 (363)
T PF04864_consen  119 -RL--YKWAG--DASNFKNSD-NPSPYIELVTSPNNPDGQLRE--A---VLNGSSGKVIHDLAYYWPHYTPITAPADHDI  187 (363)
T ss_dssp             -TT--EEEEE--ECCCGTT-S--CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SE
T ss_pred             -cC--ccccc--cHHhhccCC-CCCCeEEEEeCCCCCcccccc--h---hcCCCCcceeeeeeeecccccccCCCCCCce
Confidence             22  22211  111111100 123445567899999998742  1   224456678999997  33322222345699


Q ss_pred             EEeCCCCccccCccceEEE-EEcCHHHHHHHHHHhhhhhhccCCC-chHHHHHHHHc----cCC------cH-HHHHHHH
Q 013079          243 VVHSISKFISGGADIIAGA-VCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSE----RIP------HL-GLRMKEH  309 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~-l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~----~~~------~l-~~~~~~~  309 (450)
                      +++|+||.=|=.|.|+ || ++.++++.+++..+..-  ...|.. -+|.-|..++.    +..      .+ .--.+.+
T Consensus       188 MLFT~SK~TGHAGSR~-GWAlVKD~~Va~kM~~y~~l--nTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M  264 (363)
T PF04864_consen  188 MLFTLSKLTGHAGSRF-GWALVKDEEVAKKMTKYMEL--NTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTM  264 (363)
T ss_dssp             EEEEHHHHCS-GGG-E-EEEEES-HHHHHHHHHHHHH--HCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHH
T ss_pred             EEEEEecccCcccccc-ceeeecCHHHHHHHHHHHHH--hcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHH
Confidence            9999999999889999 66 57778888888766541  123322 23333322222    111      11 1122334


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhH-HHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhccccccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHE-LLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~-l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      +++-++|.+.+..-. ++..|.++.  ++. ..++..   ...+.+.|+.+..  .++...++...++.+       ..|
T Consensus       265 ~~RW~~L~~~~~~S~-rFSLq~~~~--~yC~ff~~~~---~psPafAWlkCe~eed~DC~~~l~~~~I~t-------r~G  331 (363)
T PF04864_consen  265 RERWEKLRAAVSASK-RFSLQKFSP--QYCNFFKRVR---EPSPAFAWLKCEREEDEDCYAVLREAKIIT-------RSG  331 (363)
T ss_dssp             HHHHHHHHHHHCCSS-SEEE---SC--EEETTTTCEE---E---SEEEEEESSCGGSSHHHHHHCTTEEE-------EEG
T ss_pred             HHHHHHHHHHHHhcC-ceecCcCCc--hhcccccccc---CCCCCeEEEecCCcccccHHHHHHhCCccc-------CCC
Confidence            555566666665432 333343321  100 001110   0135589999983  346778887766522       112


Q ss_pred             cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .                      ..|.+..++|||+-   +.++..+.|.+-|..+
T Consensus       332 ~----------------------~fga~~ryVRlSml---~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  332 V----------------------LFGADSRYVRLSML---KRDDDFDQLLERLSKL  362 (363)
T ss_dssp             G----------------------GGTS-TTEEEEESS---S-HHHHHHHHHHHHCC
T ss_pred             C----------------------ccCCCCCeEEEecc---CCHHHHHHHHHHHHhh
Confidence            1                      13556789999998   6777777777666543

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.02  E-value=9.9e-08  Score=102.81  Aligned_cols=213  Identities=14%  Similarity=0.083  Sum_probs=136.5

Q ss_pred             hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh--cc-CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL--CS-SGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l--~~-~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +.+-+++..|+++.|-+  ++-+.-+   +|++-++++++.  .+ +..+|+++...|+.+...++..... .|++++. 
T Consensus       124 qal~e~Qtmi~~LtGm~vaNASl~D~---atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~-~g~~i~~-  198 (954)
T PRK12566        124 EALLNFQQMTIDLTGLDLANASLLDE---ATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEG-FGFELVV-  198 (954)
T ss_pred             HHHHHHHHHHHHHhCchhhhhhhccc---hhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhc-CCcEEEE-
Confidence            45567889999999976  4445555   555444333332  12 2458999999999999988766554 7888775 


Q ss_pred             CCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC---CCCCCCccCCCCeEEEeCCCC-
Q 013079          174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF---SPLVLSPARLGADVVVHSISK-  249 (450)
Q Consensus       174 ~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~---~~~~~~~~~~g~di~~~S~sK-  249 (450)
                           +++++.+ .+++..|++++|| -.|.+.|+++|.+++|++|.++++ .+-   -.+...|-++|+|+++++..- 
T Consensus       199 -----~~~~~~~-~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~~-~~d~laL~ll~~Pge~GADI~vG~~Q~f  270 (954)
T PRK12566        199 -----DAVDNLA-AHAVFGALLQYPD-THGEIRDLRPLIDQLHGQQALACV-AADLLSLLVLTPPGELGADVVLGSTQRF  270 (954)
T ss_pred             -----cchhhcC-CCCEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEEE-EeCHHHHhCCCChhhcCCcEEeeCCCcC
Confidence                 3344455 5678999999986 589999999999999999998664 332   233457888999999886543 


Q ss_pred             ----ccccCccceEEEEEcCHHHHHHHHH-------------------------HhhhhhhccCCCchHH-----HHHHH
Q 013079          250 ----FISGGADIIAGAVCGPANLVNSMMD-------------------------LHQGALMLLGPTMNPK-----VAFEL  295 (450)
Q Consensus       250 ----~~g~~g~~igG~l~~~~~~~~~l~~-------------------------~~~~~~~~~g~~~~~~-----~a~~~  295 (450)
                          .||||.   +|++..++++...+-.                         .|+.-.+.+-.+....     ..++.
T Consensus       271 Gvp~~~GGP~---ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~  347 (954)
T PRK12566        271 GVPMGYGGPH---AAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAV  347 (954)
T ss_pred             CCCCCCCCCC---eeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHH
Confidence                344444   5999888776654410                         1111111111111111     11122


Q ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHHhCCCee
Q 013079          296 SERIPHLGLRMKEHCHRALIFARRMKKLGLKV  327 (450)
Q Consensus       296 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v  327 (450)
                      ..+.+-+.+..++...++.++.+.|.+.|.++
T Consensus       348 ~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~  379 (954)
T PRK12566        348 YHGPEGLKRIAQRVHRLTAILAAGLEAKGIKR  379 (954)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            22334455555566778888999998877654

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.00  E-value=3.5e-08  Score=95.65  Aligned_cols=216  Identities=19%  Similarity=0.183  Sum_probs=143.0

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh---c-cCC----CEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL---C-SSG----GHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l---~-~~g----d~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ...+.+|++.|.++.|-+.+.+.+.  +|.++=.+.++.+   - ..|    +.+++++..|+.....+.     +.|.+
T Consensus       108 l~li~~Lq~~L~~ITG~DavsLQP~--AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAa-----m~G~~  180 (496)
T COG1003         108 LELIYELQEWLKEITGMDAVSLQPN--AGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAA-----MAGFK  180 (496)
T ss_pred             HHHHHHHHHHHHHhcCCceeeccCC--CCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHh-----hcCce
Confidence            4567889999999999998866543  1666655555433   2 223    578899999987766654     47999


Q ss_pred             EEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-cCHHHHHHHHHhcCCEEEEeCCC--CCC-CCCccCCCC
Q 013079          170 TTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTF--SPL-VLSPARLGA  240 (450)
Q Consensus       170 v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~--~~~-~~~~~~~g~  240 (450)
                      |+.|+.+     |+++|++.+ .+++.++.|++||. .|.. .+|.+|+++.+++|..+..|.+-  .-+ ..+|-++|.
T Consensus       181 VV~V~~~~~G~VDlddLk~k~-~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~  258 (496)
T COG1003         181 VVVVKCDENGNVDLDDLRAKA-EDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGF  258 (496)
T ss_pred             EEEEecCCCCCccHHHHHHHh-ccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccccccccc
Confidence            9998765     999999999 78999999999864 4544 57999999999999999999884  222 247888999


Q ss_pred             eEEEeCCCCccccC---ccceEEEEEcCHHHHHHHHH---Hhhh---------------hhhccCCCchHHHHHH--HHc
Q 013079          241 DVVVHSISKFISGG---ADIIAGAVCGPANLVNSMMD---LHQG---------------ALMLLGPTMNPKVAFE--LSE  297 (450)
Q Consensus       241 di~~~S~sK~~g~~---g~~igG~l~~~~~~~~~l~~---~~~~---------------~~~~~g~~~~~~~a~~--~~~  297 (450)
                      |++=.-+||.|+.|   |.+-.|=+..+..+..-+-.   ....               .....|+......+|.  ...
T Consensus       259 DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~m  338 (496)
T COG1003         259 DVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMM  338 (496)
T ss_pred             ceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHH
Confidence            99999999998643   11111444444333321100   0000               0012233322333333  222


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHh
Q 013079          298 RIPHLGLRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       298 ~~~~l~~~~~~~~~~~~~l~~~L~~  322 (450)
                      +.+-+.+..+...-+++++.++|+.
T Consensus       339 G~~GL~~ase~AvLNANYia~rL~~  363 (496)
T COG1003         339 GADGLKQASEVAVLNANYIARRLKG  363 (496)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhh
Confidence            3444555555667788899999986

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.88  E-value=7.4e-07  Score=82.91  Aligned_cols=231  Identities=13%  Similarity=0.129  Sum_probs=134.5

Q ss_pred             EEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCccCe----eEEEeCCC----CHHHHHHhhhc
Q 013079          118 YCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNI----TTTFVDIS----DHEMVNSAIVQ  187 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~----~v~~v~~~----d~~~l~~ai~~  187 (450)
                      +-+-|   ||.|+.++..-+.  -....|-+++|+|......+..     .|+    ...+.+..    |++.+...|+.
T Consensus       103 vQsls---GTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~-----aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~  174 (410)
T KOG1412|consen  103 VQSLS---GTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEK-----AGFTTVATYPYWDAENKCVDLEGFLSDLES  174 (410)
T ss_pred             eeecc---ccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHH-----cCCceeeeeeeecCCCceecHHHHHHHHhh
Confidence            45567   8999988776542  2345788999999999888863     442    23333333    77777777732


Q ss_pred             CCce-EEEEe-cCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCC-CCcc----------CCCC-eEEEeCCCCc
Q 013079          188 GRTK-VLYFE-SISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLV-LSPA----------RLGA-DVVVHSISKF  250 (450)
Q Consensus       188 ~~t~-lv~i~-~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~-~~~~----------~~g~-di~~~S~sK~  250 (450)
                      .... ++.+. ..+||||.-.   ....|++..++++...+.|-+|.++. .++.          +.|. -+++.||+|.
T Consensus       175 APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKN  254 (410)
T KOG1412|consen  175 APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKN  254 (410)
T ss_pred             CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhh
Confidence            2223 33333 3599999765   36678888889999999999985553 2221          1133 4899999999


Q ss_pred             cccCccceEEEE---EcCHHHHHHHH----HHhhhhhhccCCCchHHHHHHHHccCCcHHH-------HHHHHHHHHHHH
Q 013079          251 ISGGADIIAGAV---CGPANLVNSMM----DLHQGALMLLGPTMNPKVAFELSERIPHLGL-------RMKEHCHRALIF  316 (450)
Q Consensus       251 ~g~~g~~igG~l---~~~~~~~~~l~----~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~-------~~~~~~~~~~~l  316 (450)
                      +|.-+.|+ |-+   +.++..+..+.    ..... ....++......+...+...+..++       ...|..+.|..|
T Consensus       255 fGlYneRv-Gnltvv~~n~a~i~~v~SQl~lviR~-~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aL  332 (410)
T KOG1412|consen  255 FGLYNERV-GNLTVVVNNPAVIAGVKSQLTLVIRS-NWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTAL  332 (410)
T ss_pred             cccccccc-cceEEEecChhHHHHHHHHHHHHHhh-ccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 544   33454444332    22220 0122333333333333332222222       223445566666


Q ss_pred             HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      ++.|..++    .|+--+|        ..    ..-||+++.=-++...+.+++...+
T Consensus       333 rd~L~aL~----TPGtWDH--------I~----~QiGMFSyTGLtp~qV~~li~~h~v  374 (410)
T KOG1412|consen  333 RDHLVALK----TPGTWDH--------IT----QQIGMFSYTGLTPAQVDHLIENHKV  374 (410)
T ss_pred             HHHHHhcC----CCCcHHH--------HH----hhccceeecCCCHHHHHHHHHhceE
Confidence            66666543    4542221        11    1345788775566667777766554

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.81  E-value=3.3e-06  Score=80.35  Aligned_cols=305  Identities=16%  Similarity=0.167  Sum_probs=172.4

Q ss_pred             CCCCChhHHHhhcCCCCCCCCcccccccccCccccCCH-HHHHHhhcCCCCC--CCCCccccCCCChhHHHHHH----HH
Q 013079           36 AAWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEP-ETMRRMFAGELGP--DRDFFIYSRHFNPTVLNLSR----QM  108 (450)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~-~~~~~~~~~~~~n--~~~~~~y~r~~~~~~~~l~~----~i  108 (450)
                      ++..||+..-.--....-+..++.  +-+|-.|+...+ +++-..+.+.|..  |.. -.||  ++..+++++.    +-
T Consensus        21 l~~~DPev~~ii~~Ek~RQ~~gie--LIaSENFts~aVmeAlGS~ltNKYSEGyPG~-RYYG--Gne~ID~iE~LCq~RA   95 (477)
T KOG2467|consen   21 LEEVDPEVHDIIEKEKERQKRGIE--LIASENFTSRAVMEALGSCLTNKYSEGYPGA-RYYG--GNEYIDQIELLCQKRA   95 (477)
T ss_pred             hhhcChHHHHHHHHHHHhhhccee--EeecccchHHHHHHHHhHHhhcccccCCCcc-cccC--cchHHHHHHHHHHHHH
Confidence            555677654443221222222232  345666665443 5555555555421  211 1233  5666655443    23


Q ss_pred             HHHhCCCe----E-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHH-HHhCCCccCeeEEEe-------CC
Q 013079          109 AALEGTEA----A-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALL-THFFPRACNITTTFV-------DI  175 (450)
Q Consensus       109 A~l~g~~~----~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~-~~~~~~~~g~~v~~v-------~~  175 (450)
                      -+.++.++    + +-.=|   |+.||..+..+++.|+++|.-.+.-.++....- ..-..+ ......|.       +.
T Consensus        96 LeaF~ldp~kWGVNVQp~S---GSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kk-ISa~SiyFeSmPYkv~~  171 (477)
T KOG2467|consen   96 LEAFGLDPEKWGVNVQPYS---GSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKK-ISATSIYFESMPYKVDP  171 (477)
T ss_pred             HHHhCCCHHHCceeeccCC---CCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCce-eeeeeeecccCceeeCC
Confidence            33456543    2 33446   789999999999999999986665444432210 000011 11111111       11


Q ss_pred             C----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCC-----CCccCCCCeEEEe
Q 013079          176 S----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVH  245 (450)
Q Consensus       176 ~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~-----~~~~~~g~di~~~  245 (450)
                      .    |-|.|++....-++++++.-...  --...|..++.++|.+.|+.+++|-++ +++.     -+|.++ +|+|+.
T Consensus       172 ~TG~IDYD~Le~~A~~frPk~iiaG~Sa--Y~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTT  248 (477)
T KOG2467|consen  172 STGYIDYDKLEKTATLFRPKLIIAGTSA--YSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-CDIVTT  248 (477)
T ss_pred             CCCceehHHHHHHHHhcCCcEEEecccc--chhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-cceeec
Confidence            1    78888876535578887753222  234578999999999999999999987 4442     345544 899999


Q ss_pred             CCCCccccCccceEEEEEcCH---------------HHHHHHHHHhhhhhhccCCCchHHHHHH-HHc--cCCcHHHHHH
Q 013079          246 SISKFISGGADIIAGAVCGPA---------------NLVNSMMDLHQGALMLLGPTMNPKVAFE-LSE--RIPHLGLRMK  307 (450)
Q Consensus       246 S~sK~~g~~g~~igG~l~~~~---------------~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~--~~~~l~~~~~  307 (450)
                      +.||.+-+|-   ||.+.-++               ++-+++...--. ....|+.....++.+ ++.  .-..+.+..+
T Consensus       249 TTHKsLRGPR---g~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP-~lQGGPHNhtIaalAvALkQa~tpefk~Yq~  324 (477)
T KOG2467|consen  249 TTHKSLRGPR---GAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFP-GLQGGPHNHTIAALAVALKQAMTPEFKEYQK  324 (477)
T ss_pred             cccccccCCc---ceeEEEeccCCcCCCCCCCcceechhhhhhhhccc-cccCCCCcchHHHHHHHHHhhCCHHHHHHHH
Confidence            9999997663   57664322               122233211100 012233322222222 222  2244666777


Q ss_pred             HHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013079          308 EHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN  374 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~~~~~l~~  374 (450)
                      +..+++..|++.|.+.|.++...+..+                  .++-+++.    +...++.+++.+.+
T Consensus       325 qV~~Nakala~~l~~~Gy~lvtgGTDn------------------HlvLvDLr~~G~dGarvE~vle~~~I  377 (477)
T KOG2467|consen  325 QVLKNAKALASALISRGYKLVTGGTDN------------------HLVLVDLRPKGVDGARVEKVLELCHI  377 (477)
T ss_pred             HHHHHHHHHHHHHHHcCceEecCCccc------------------eEEEEeccccCCchHHHHHHHHHhhh
Confidence            789999999999999998776555322                  26777776    45567888887764

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.71  E-value=5.6e-06  Score=81.14  Aligned_cols=254  Identities=13%  Similarity=0.159  Sum_probs=144.8

Q ss_pred             ccccCCCChhHHHHHHHHHHH----hCC----------Ce-EEEecChHHHHHHHHHHHHHhc-------cCC-------
Q 013079           91 FIYSRHFNPTVLNLSRQMAAL----EGT----------EA-AYCTASDKAGMSAISSVLMQLC-------SSG-------  141 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l----~g~----------~~-~~~tsg~~~gt~ai~~al~~l~-------~~g-------  141 (450)
                      -.++..+.|...+|+..+-+.    ++-          +. -++-.+   ++++...++.+..       +.+       
T Consensus       101 vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~t---ases~lvallaaR~~~i~~~k~~~p~~~e~  177 (511)
T KOG0628|consen  101 VGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGT---ASESVLVALLAARTEKIEEIKSRPPELHES  177 (511)
T ss_pred             ccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecC---cchhHHHHHHHHHHHHHHHhhcCCCcccch
Confidence            335566789999999655544    431          11 255566   7888888776531       112       


Q ss_pred             ----CE-EEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCC----ceEEEEecCCCCcccc--
Q 013079          142 ----GH-VVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGR----TKVLYFESISNPTLAV--  205 (450)
Q Consensus       142 ----d~-Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~----t~lv~i~~~~NptG~v--  205 (450)
                          +- +-+++-.|.++...+.     +.|++.+.++.+     +.+.|+++|.++.    +-.+++.+. .-||..  
T Consensus       178 ~~~~~lV~Y~SDqahssveka~~-----i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~-GTT~~ca~  251 (511)
T KOG0628|consen  178 SVLARLVAYCSDQAHSSVEKACL-----IAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATL-GTTSSCAF  251 (511)
T ss_pred             hhhhhheEEecCcccchHHHhHh-----hcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEee-cCcccccc
Confidence                11 3356777887777653     467788887765     6788888883322    223333332 234444  


Q ss_pred             cCHHHHHHHHHhcCCEEEEeCCC-CCCCC-C---ccCC---CCeEEEeCCCCccccCccceEEEEEcCH-HH-----HHH
Q 013079          206 ANIPELSRLAHDKGVTVVVDNTF-SPLVL-S---PARL---GADVVVHSISKFISGGADIIAGAVCGPA-NL-----VNS  271 (450)
Q Consensus       206 ~~l~~I~~la~~~gi~livD~~~-~~~~~-~---~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~-~~-----~~~  271 (450)
                      .++.+|..+|+++|+++|||++| +.... .   ...-   -+|-+..-.||++-..-+.. ..-+.+. .+     .++
T Consensus       252 D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs-~lWvkd~~~~~~~~~vdp  330 (511)
T KOG0628|consen  252 DELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCS-PLWVKDGTKLSRAFNVDP  330 (511)
T ss_pred             ccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeee-cceeecCceeeeeeecCh
Confidence            58999999999999999999999 33321 1   1111   25777778888876554332 2222221 11     111


Q ss_pred             HH--H--------HhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchh
Q 013079          272 MM--D--------LHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHH  338 (450)
Q Consensus       272 l~--~--------~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~  338 (450)
                      +.  .        ++. +....|--.-..-.|..++  +.+.+.++++++.++++.+.+.+.+-+. ++.-|.       
T Consensus       331 ~yL~h~~~~~~~Dyrh-wqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~-------  402 (511)
T KOG0628|consen  331 LYLKHAYQGSAPDYRH-WQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKR-------  402 (511)
T ss_pred             HhhcchhhccCCCccc-cccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccc-------
Confidence            11  0        011 1111222222333344333  4566777788888777777776655432 433332       


Q ss_pred             HHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhc
Q 013079          339 ELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQN  374 (450)
Q Consensus       339 ~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~  374 (450)
                                  .=++++|++++ .+..+.|++++..
T Consensus       403 ------------~lgLvcFRlk~~N~~ne~Ll~~in~  427 (511)
T KOG0628|consen  403 ------------ILGLVCFRLKGDNEINEALLNRLNS  427 (511)
T ss_pred             ------------ccceeEEeecCCcHHHHHHHHHHHh
Confidence                        22389999983 3446778888764

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.59  E-value=1.9e-06  Score=83.52  Aligned_cols=216  Identities=10%  Similarity=0.056  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhc---cC-----C-----CE-EEEeCCCchhHHHHHHHhCCC
Q 013079          102 LNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLC---SS-----G-----GH-VVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus       102 ~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~---~~-----g-----d~-Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      .+.-..+-++.|.+   .-+|++|   |+-++..++.+..   -|     |     +- +.+++-+|.++..... ++. 
T Consensus       144 ~~vl~km~~ivGw~~~~DgIf~pg---gsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa-~lg-  218 (510)
T KOG0629|consen  144 EEVLAKMREIVGWEEGGDGIFAPG---GSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAA-FLG-  218 (510)
T ss_pred             HHHHHHHHHHhCCCCCCCceecCC---chhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHH-Hhc-
Confidence            34445555666654   4599999   9888887776432   11     2     23 3467778888877764 222 


Q ss_pred             ccC-eeEEEeCCC-----CHHHHHHhhhc--CC---ceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCC
Q 013079          165 ACN-ITTTFVDIS-----DHEMVNSAIVQ--GR---TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV  232 (450)
Q Consensus       165 ~~g-~~v~~v~~~-----d~~~l~~ai~~--~~---t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~  232 (450)
                       +| -.+..|+.+     ++++|++.|..  .+   +-+|..+.-....|...|+..|+++|++|++++|||+++ +++.
T Consensus       219 -~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglL  297 (510)
T KOG0629|consen  219 -LGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLL  297 (510)
T ss_pred             -cCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccc
Confidence             12 345555544     78888887732  22   345666666667788899999999999999999999999 4454


Q ss_pred             CCcc---CC----CCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhh-----------------hhccCCCc
Q 013079          233 LSPA---RL----GADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGA-----------------LMLLGPTM  287 (450)
Q Consensus       233 ~~~~---~~----g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~-----------------~~~~g~~~  287 (450)
                      .+..   .+    .++-++.+.||.+|.+ ... +.+.. -..++++.......+                 ....|-..
T Consensus       298 mS~k~R~kl~Giera~SvtwnpHK~~gap-lqC-sa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~  375 (510)
T KOG0629|consen  298 MSRKHRHKLTGIERANSVTWNPHKLMGAP-LQC-SAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHV  375 (510)
T ss_pred             cChhhHhhccCccccCceeecHHHhhcCc-chh-hHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccc
Confidence            4321   11    4789999999999965 333 44333 333444432211100                 11223233


Q ss_pred             hHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          288 NPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       288 ~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      ...--|+.++  +...+++.+.+..++++++.++|++.+.
T Consensus       376 D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~  415 (510)
T KOG0629|consen  376 DVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREG  415 (510)
T ss_pred             cHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3444555544  4566888899999999999999998765

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.58  E-value=3.1e-06  Score=82.56  Aligned_cols=152  Identities=13%  Similarity=0.182  Sum_probs=96.2

Q ss_pred             CeEEEecChHHHH-HHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----C----CHHHHHH
Q 013079          115 EAAYCTASDKAGM-SAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S----DHEMVNS  183 (450)
Q Consensus       115 ~~~~~tsg~~~gt-~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----~----d~~~l~~  183 (450)
                      ..+++++-   +| .++.+++.++.  ..++.|+.+...+.+....+.     ..|.++..|+.    +    |++.+++
T Consensus        75 ~~~~~vP~---atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~-----~AGl~~~vV~~~~~~d~l~td~~~ie~  146 (389)
T PF05889_consen   75 KSCFVVPM---ATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIE-----RAGLEPVVVENVLEGDELITDLEAIEA  146 (389)
T ss_dssp             CEEEEESS----HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHH-----HTT-EEEEE-EEEETTEEEEHHHHHHH
T ss_pred             cceEEEec---ccccHHHHHHHHHhcccCCceEEEeeccccchHHHHH-----hcCCeEEEeeccCCCCeeeccHHHHHH
Confidence            45677766   54 34556666653  346889999988888777765     25777766663    1    6778887


Q ss_pred             hhhc--CCceEEEEecCCCCcccccC-HHHHHHHHHhcCCEEEEeCCCCCCCC-------CccCC-CCeEEEeCCCCccc
Q 013079          184 AIVQ--GRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTFSPLVL-------SPARL-GADVVVHSISKFIS  252 (450)
Q Consensus       184 ai~~--~~t~lv~i~~~~NptG~v~~-l~~I~~la~~~gi~livD~~~~~~~~-------~~~~~-g~di~~~S~sK~~g  252 (450)
                      .+++  ++..+.++.++.---+.+.| +.+|+++|+++||+.++.++|+--..       ..... ..|+++.|.-|.|-
T Consensus       147 ~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~  226 (389)
T PF05889_consen  147 KIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFM  226 (389)
T ss_dssp             HHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHC
T ss_pred             HHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEE
Confidence            7732  35577778888888888988 99999999999999999999843110       01112 36888888888887


Q ss_pred             cCccceEEEE-Ec-CHHHHHHHHHHhh
Q 013079          253 GGADIIAGAV-CG-PANLVNSMMDLHQ  277 (450)
Q Consensus       253 ~~g~~igG~l-~~-~~~~~~~l~~~~~  277 (450)
                      .|-   ||.+ .+ ++..+..+.....
T Consensus       227 VPv---Ggai~As~~~~~i~~vs~~Yp  250 (389)
T PF05889_consen  227 VPV---GGAIMASFDPSGILAVSKEYP  250 (389)
T ss_dssp             EES---SHEEEEESSHHHHHHHHHTSH
T ss_pred             ecC---CCcEEEecCHHHHHHHHHHhh
Confidence            552   4444 33 4567777765433

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=98.56  E-value=1.7e-05  Score=75.44  Aligned_cols=219  Identities=18%  Similarity=0.155  Sum_probs=129.4

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccC-----CCEEEEeCCCchhHHH-HHHHhCCCccCeeEE
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSS-----GGHVVAARTLYGGTHA-LLTHFFPRACNITTT  171 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~-----gd~Vi~~~~~y~~~~~-~~~~~~~~~~g~~v~  171 (450)
                      +.....|++.+-+.+|-+.++-|..   |..|-+..+..++++     |.+.++.+..|..+.. ..+     ..|..+.
T Consensus        78 srs~~~L~~avkdifGfq~~iPthQ---GRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~-----~ng~~~~  149 (471)
T COG3033          78 SRSYYALADAVKDIFGFQYTIPTHQ---GRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQ-----INGATPR  149 (471)
T ss_pred             cccHHHHHHHHHHhcCceeeeeccC---CccHHHHHHHHHhhhccccCCccccccccceecchhHHHH-----hcCCccc
Confidence            4456778899999999988999999   888877777666654     4455566666554433 222     1232222


Q ss_pred             EeCC---------------CCHHHHHHhhhc---CCceEEEEecCCCCcccc----cCHHHHHHHHHhcCCEEEEeCCC-
Q 013079          172 FVDI---------------SDHEMVNSAIVQ---GRTKVLYFESISNPTLAV----ANIPELSRLAHDKGVTVVVDNTF-  228 (450)
Q Consensus       172 ~v~~---------------~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v----~~l~~I~~la~~~gi~livD~~~-  228 (450)
                      -+..               -|++.|++.|..   ++.-.|++.--+|..|..    .+++++.++|++|+++++.|.+. 
T Consensus       150 n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rf  229 (471)
T COG3033         150 NVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARF  229 (471)
T ss_pred             cccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhh
Confidence            1111               188899988831   356666665555555433    46889999999999999999883 


Q ss_pred             ---CCCC------C---CccCC------CCeEEEeCCCCccccCccceEEEEEcCHH----HHHHHHHHh--hhhhhccC
Q 013079          229 ---SPLV------L---SPARL------GADVVVHSISKFISGGADIIAGAVCGPAN----LVNSMMDLH--QGALMLLG  284 (450)
Q Consensus       229 ---~~~~------~---~~~~~------g~di~~~S~sK~~g~~g~~igG~l~~~~~----~~~~l~~~~--~~~~~~~g  284 (450)
                         ..|.      +   +..++      -+|-++.|+-|-.-..   |||+++.+++    +...++...  +......|
T Consensus       230 aENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYG  306 (471)
T COG3033         230 AENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVN---MGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYG  306 (471)
T ss_pred             hhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceec---cccEEEecCccHHHHHHHHHhheEeeccccccC
Confidence               1121      1   11111      3788999999976543   6899976654    555554321  11111222


Q ss_pred             CCch-HHHHHH-HH-cc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC
Q 013079          285 PTMN-PKVAFE-LS-ER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG  331 (450)
Q Consensus       285 ~~~~-~~~a~~-~~-~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~  331 (450)
                      +... ...+.+ .+ ..  ..++..|+    ...++|.+.|.+.|.++..|.
T Consensus       307 gl~GrdmealAvGL~e~~~~~yl~~Rv----~Qv~YL~~~l~~~GVpi~~pa  354 (471)
T COG3033         307 GLAGRDMEALAVGLREGVNFDYLAHRV----AQVQYLADGLEEAGVPIVQPA  354 (471)
T ss_pred             cccchhHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHhcCCeeEecC
Confidence            2211 111111 11 11  22344444    345688999999887666553

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.41  E-value=3e-05  Score=74.39  Aligned_cols=285  Identities=10%  Similarity=0.039  Sum_probs=158.1

Q ss_pred             ChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCE--EEEeCCCchhHHHHHHHhCC--CccCeeE
Q 013079           98 NPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFP--RACNITT  170 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~--Vi~~~~~y~~~~~~~~~~~~--~~~g~~v  170 (450)
                      ...+.++++.+.++++..   .++|..|+  +|....++...|+..+..  |.+-..+-.+....- .+..  .......
T Consensus        49 ~~v~~~a~~~lreLl~iPd~Y~VlflqGG--at~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~-~~~~~~~~~~~~~  125 (365)
T COG1932          49 KNVLEEAEKDLRELLNIPDDYKVLFLQGG--ATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAK-KVGKQPKLIDARI  125 (365)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCc--cHHHHHHHHHhhhcccCceeEeeeehhHhHHHHHH-Hhcccccccccce
Confidence            345788899999999864   36666651  677788888888765443  555544444333321 2211  0000110


Q ss_pred             E---EeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC-HHHHHHHHHhcCCEEEEeCCCCCCCCCccCC-CCeEEEe
Q 013079          171 T---FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN-IPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVH  245 (450)
Q Consensus       171 ~---~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~-l~~I~~la~~~gi~livD~~~~~~~~~~~~~-g~di~~~  245 (450)
                      .   +-...+++.+.  + .++...|++++-..-+|.-.+ ...+.     .+.++|+|.+- .+.-.+.++ ..|++..
T Consensus       126 ~~~~~~~iP~~~~~~--~-~~~~ayv~~~~NeTi~Gv~v~~~p~~~-----~~~~~v~D~SS-~ilsr~iDvsk~dviya  196 (365)
T COG1932         126 EEAGYGSIPDLSKWD--F-SDNDAYVHFCWNETISGVEVPELPDIG-----SDGLLVADASS-AILSRPIDVSKYDVIYA  196 (365)
T ss_pred             eccCccCCCChhhcc--c-CCCccEEEEecCCcccceEccCCCCCC-----CCceEEEeccc-HHhcCCCChhHcceEEE
Confidence            0   11112444333  3 344444666543334454433 22221     12789999874 222222222 4689999


Q ss_pred             CCCCccccCccceEEEEEcCHHHHHHHHHH--------hhhhh-hccCCCchHHHHHHHHccCCc------HHHHHHHHH
Q 013079          246 SISKFISGGADIIAGAVCGPANLVNSMMDL--------HQGAL-MLLGPTMNPKVAFELSERIPH------LGLRMKEHC  310 (450)
Q Consensus       246 S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--------~~~~~-~~~g~~~~~~~a~~~~~~~~~------l~~~~~~~~  310 (450)
                      +..|.+|+.|  + ++++.++++++++...        ..+.. ...-++++..+.+.....++|      ++...++..
T Consensus       197 gaQKnlGpaG--l-tvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~  273 (365)
T COG1932         197 GAQKNLGPAG--L-TVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQ  273 (365)
T ss_pred             ehhhccCccc--e-EEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999988  5 8888888888776432        11100 012244544444444333343      445556678


Q ss_pred             HHHHHHHHHHHhCCCe--eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccc
Q 013079          311 HRALIFARRMKKLGLK--VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY  388 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~--v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~  388 (450)
                      ++++.|-+.+.+.++-  ...+. .+                .-..++|.+.+.+....|+..+...+    +..-.| .
T Consensus       274 ~ka~~LY~~id~s~fy~~~v~~~-~R----------------S~mnV~f~~~~~~ld~~fv~eae~~g----l~~lkG-h  331 (365)
T COG1932         274 AKAQLLYDWIDKSDFYRNLVAKA-NR----------------SRMNVTFTLVDAELDKGFVAEAEAAG----LIYLKG-H  331 (365)
T ss_pred             HHHHHHHHHHHhCCccccccchh-hc----------------cceeEEEEcCcHHHHHHHHHHHHHcC----Cceecc-c
Confidence            8888899999887651  11111 11                11258888887766678888877533    111111 1


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          389 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       389 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                            .                  ..+-+|+|++ -.-.-+.++.|...++.+.+
T Consensus       332 ------r------------------~vgGmRasiy-nA~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         332 ------R------------------SVGGLRASIY-NAVPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             ------c------------------CCCceeeeee-cCCCHHHHHHHHHHHHHHHH
Confidence                  0                  0244999999 75566667777777766543

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.32  E-value=3.7e-05  Score=72.99  Aligned_cols=176  Identities=18%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             HHHHHHhhhc-----CCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEEEeCCCCCCCC--C-------ccCCC
Q 013079          178 HEMVNSAIVQ-----GRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVL--S-------PARLG  239 (450)
Q Consensus       178 ~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~--~-------~~~~g  239 (450)
                      ++++++.|.+     ..+.+++||..+.+.|.-.    -.++|.+++++||+.+|+||+|++...  .       .++..
T Consensus       255 l~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~P  334 (484)
T KOG1405|consen  255 LAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSP  334 (484)
T ss_pred             HHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCC
Confidence            5666666621     2467899999999988763    288999999999999999999944321  1       12235


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHH--HHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVN--SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA  317 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~--~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~  317 (450)
                      +|+|+  |||=+-.     ||+... ++++.  +.+-+..    ..|-..-...+..+.+.+.. +..+.....-.+.|.
T Consensus       335 pD~vT--FSKK~q~-----gGffh~-~~frpn~pYrifNT----WmGdP~k~lll~~vv~~I~~-~~Ll~n~~~vG~~l~  401 (484)
T KOG1405|consen  335 PDVVT--FSKKFQT-----GGFFHD-EEFRPNEPYRIFNT----WMGDPSKNLLLEEVVQEIKR-EDLLNNVAHVGKALL  401 (484)
T ss_pred             cccee--hhhhhhc-----CccccC-cccCCCchHHHhhh----hcCChHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence            78988  7787762     365432 22221  1111111    23322111111111111111 111222233334454


Q ss_pred             HHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079          318 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       318 ~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      ..|.++..  .+|+.-            +..+|.|.++.+++++......|+..++.      -++.+|
T Consensus       402 ~gL~~Lq~--~~p~~~------------~~~RGrGTF~a~d~ps~~~Rdk~i~~~~~------nGv~~G  450 (484)
T KOG1405|consen  402 KGLLELQA--KYPGKI------------NNLRGRGTFIAWDCPSGSIRDKLILIARL------NGVNLG  450 (484)
T ss_pred             HHHHHHHH--hCchhh------------hcccccceEEEEeCCChHHHHHHHHHHHH------cCceec
Confidence            45443321  234311            12347899999999988777888888876      355665

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=98.22  E-value=3.8e-05  Score=72.76  Aligned_cols=226  Identities=13%  Similarity=0.158  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE---eCCC----CHHHHHHhhhc-CCceEEEE
Q 013079          126 GMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF---VDIS----DHEMVNSAIVQ-GRTKVLYF  195 (450)
Q Consensus       126 gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~---v~~~----d~~~l~~ai~~-~~t~lv~i  195 (450)
                      ||.|+..+..-+  .-++..|.+++|+|+.....+.     ..|+.+.+   .+..    |.+.+.+.+.. +.-..|++
T Consensus       129 GTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~-----~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilL  203 (427)
T KOG1411|consen  129 GTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFK-----DAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILL  203 (427)
T ss_pred             CcchhhHHHHHHHhhccccceeecCCcccccCcccc-----ccCcceeeeeeccccccccchHHHHHHHhcCCCCcEEEe
Confidence            777766655433  3467889999999998776664     25655533   3322    55554444411 12223333


Q ss_pred             -ecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCCC-Ccc----------CC-CCeEEEeCCCCccccCccceE
Q 013079          196 -ESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLVL-SPA----------RL-GADVVVHSISKFISGGADIIA  259 (450)
Q Consensus       196 -~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~~-~~~----------~~-g~di~~~S~sK~~g~~g~~ig  259 (450)
                       ...+||||.-.   ..++|.++.++.+.+-+.|-+|.++.. +..          +- +.-+++.|+.|.+|.-|.|+ 
T Consensus       204 haCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERv-  282 (427)
T KOG1411|consen  204 HACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERV-  282 (427)
T ss_pred             ehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcc-
Confidence             35799999764   577999999999999999999855532 111          11 34588999999999999998 


Q ss_pred             EEE---EcCHHHHHHHH----HHhhhhhhccCCCchHHHHHHHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          260 GAV---CGPANLVNSMM----DLHQGALMLLGPTMNPKVAFELSERIP-------HLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       260 G~l---~~~~~~~~~l~----~~~~~~~~~~g~~~~~~~a~~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      |.+   +.+.+...++.    ...++. ...++......+...+...+       ++.....++...|+.|.+.|+..+.
T Consensus       283 Ga~svvc~~ad~A~rV~SQlk~liRpm-YSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs  361 (427)
T KOG1411|consen  283 GALSVVCKDADEAKRVESQLKILIRPM-YSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGS  361 (427)
T ss_pred             ceeEEEecCHHHHHHHHHHHHHHhccc-ccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCC
Confidence            554   34455444432    222211 12333333333333333221       1222334455556666666654332


Q ss_pred             eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       326 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                          |.     ...+..+       .=||++|.--++++.+.+..+..+
T Consensus       362 ----~~-----~W~hI~~-------QIGMF~fTgl~peQv~~l~ke~~i  394 (427)
T KOG1411|consen  362 ----PG-----NWSHITK-------QIGMFCFTGLNPEQVDWLTKEYHI  394 (427)
T ss_pred             ----Cc-----cHHHHHH-------hhheeeecCCCHHHHHHHHhhhee
Confidence                11     1111111       123888886678777777766553

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.07  E-value=0.00022  Score=72.80  Aligned_cols=217  Identities=15%  Similarity=0.127  Sum_probs=132.2

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHH---HHhc-cCCC----EEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVL---MQLC-SSGG----HVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al---~~l~-~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      .....+|++.++++.|-+.+.|-+++  |.++-.+.+   ++.. ..|+    .-+++...|+.....+.     +.|.+
T Consensus       581 ~~lf~~Le~~Lc~iTG~D~~s~QPNs--GA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~-----Magmk  653 (1001)
T KOG2040|consen  581 QQLFTELEKDLCEITGFDSFSLQPNS--GAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAA-----MAGMK  653 (1001)
T ss_pred             HHHHHHHHHHhheeecccceeecCCC--CcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHH-----hcCCE
Confidence            35678999999999999988665432  555545444   4443 2332    23455556655444443     46888


Q ss_pred             EEEeCCC-----CHHHHHHhhhc--CCceEEEEecCCCCcccc-cCHHHHHHHHHhcCCEEEEeCCC--CCC-CCCccCC
Q 013079          170 TTFVDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTF--SPL-VLSPARL  238 (450)
Q Consensus       170 v~~v~~~-----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~--~~~-~~~~~~~  238 (450)
                      ++.|..+     |..+|++...+  ++-.++.|..|+. .|.. ..+++++++.++||-.+..|.+-  ..+ ..+|-++
T Consensus       654 vvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~  732 (1001)
T KOG2040|consen  654 VVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDI  732 (1001)
T ss_pred             EEEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccc
Confidence            8887765     77888776632  4567888888864 4555 56999999999999999999874  222 2578889


Q ss_pred             CCeEEEeCCCCccccC---ccc-eEEEEEcCHHHHHHHHH------Hhhhhh--------hccCCC--chHHHHHHHHcc
Q 013079          239 GADVVVHSISKFISGG---ADI-IAGAVCGPANLVNSMMD------LHQGAL--------MLLGPT--MNPKVAFELSER  298 (450)
Q Consensus       239 g~di~~~S~sK~~g~~---g~~-igG~l~~~~~~~~~l~~------~~~~~~--------~~~g~~--~~~~~a~~~~~~  298 (450)
                      |+|+.-.-+||.|..|   |.+ + |=+..++.+..-+-.      .+.+..        ..+|+.  +..-.++....+
T Consensus       733 GaDV~HLNLHKTFcIPHGGGGPg~-gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG  811 (1001)
T KOG2040|consen  733 GADVCHLNLHKTFCIPHGGGGPGM-GPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMG  811 (1001)
T ss_pred             cccceeecccceeeecCCCCCCCC-CccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhc
Confidence            9999999999998633   111 2 334333333221100      000000        012222  112233333334


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          299 IPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       299 ~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      ...+....+-..-++.++.++|+.+
T Consensus       812 ~~GL~~as~~AiLNaNYMakRLe~h  836 (1001)
T KOG2040|consen  812 SGGLKDASKIAILNANYMAKRLESH  836 (1001)
T ss_pred             ccccchhhHHHhhhhHHHHHHHhhc
Confidence            4555555555566788999999875

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=97.92  E-value=0.0033  Score=64.44  Aligned_cols=138  Identities=19%  Similarity=0.219  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHH
Q 013079          103 NLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHE  179 (450)
Q Consensus       103 ~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~  179 (450)
                      ..+..|+++.|-+  ++-+.--   ||+|-.+...+. ..++.++++...+|+.+...++.... .+|++++..   |++
T Consensus       167 NyQTmi~dlTGL~~aNASLLDE---gTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~-~~~i~v~~~---~~~  239 (1001)
T KOG2040|consen  167 NYQTMITDLTGLPMANASLLDE---GTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAK-GFGIKVVVS---DIK  239 (1001)
T ss_pred             hhHHhhhhccCCcccchhhhcc---chhHHHHHHHHHhhcccceEEecCCCCcchhhhhhcccc-ccceeEEec---CHH
Confidence            4455666776643  2323333   555555444332 34556799999999999988854333 367765443   444


Q ss_pred             HHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCc
Q 013079          180 MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF  250 (450)
Q Consensus       180 ~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~  250 (450)
                      +... . ..+...|++..|.. -|.+.|..++++.++..|.++++-.-.  --+...|.++|+|++++|...+
T Consensus       240 ~~~~-s-~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRF  309 (1001)
T KOG2040|consen  240 EADY-S-SKDVSGVLVQYPDT-EGSVLDFDELVELAHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRF  309 (1001)
T ss_pred             Hhhc-c-ccceeEEEEEcCCC-CCcccCHHHHHHHhhccCceEEEeehhhHHHccCChhhcCceeeecccccc
Confidence            4332 2 35678899998865 589999999999999999887653222  2234578889999999998775

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.12  E-value=0.0012  Score=57.11  Aligned_cols=51  Identities=14%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHHhC------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079          100 TVLNLSRQMAALEG------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus       100 ~~~~l~~~iA~l~g------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      .++.+.+.+.+..|      .+++++|+|   +++|+.+++.+++++||.|+++.|.|++
T Consensus        97 lR~AiA~~l~~~~g~~v~~~pd~Ivvt~G---a~~al~~l~~~l~dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         97 FRKAIANFMAEARGGRVKFDADMIVLSAG---ATAANEIIMFCIADPGDAFLVPTPYYAA  153 (153)
T ss_pred             HHHHHHHHHHHHhCCCCccchhheEEcCC---HHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            33444444444434      246899999   9999999999999999999999999974

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.01  Score=54.62  Aligned_cols=166  Identities=14%  Similarity=0.214  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc--cCC-CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079          102 LNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC--SSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus       102 ~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~--~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      +++...+-.+.|.   ..+++++= -+| .++.+++..+.  +|. .-|+-.+..-.+....+-     ..|++...+..
T Consensus        60 ne~a~~~i~l~glhav~nc~vvpl-~tg-mslslc~~s~r~krpkakyiiw~ridqks~~ksi~-----~agfepiiie~  132 (432)
T KOG3843|consen   60 NEFAKDAIHLAGLHAVANCFVVPL-ATG-MSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSII-----HAGFEPIIIEN  132 (432)
T ss_pred             HHHHHHHHHHhhhhhhhceeEEec-ccc-ccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHH-----hcCCCceeeec
Confidence            4444444455553   34444432 003 34566666653  333 345556665555544432     14665554432


Q ss_pred             ----C----CHHHHHHhhhcCCce-EEEEecCCC-Ccccc-cCHHHHHHHHHhcCCEEEEeCCCCCCCC-------CccC
Q 013079          176 ----S----DHEMVNSAIVQGRTK-VLYFESISN-PTLAV-ANIPELSRLAHDKGVTVVVDNTFSPLVL-------SPAR  237 (450)
Q Consensus       176 ----~----d~~~l~~ai~~~~t~-lv~i~~~~N-ptG~v-~~l~~I~~la~~~gi~livD~~~~~~~~-------~~~~  237 (450)
                          +    |++.+++.++..... .+++.+..+ -.-.. ..+++|+.+|..|+++-+|.++|+--..       ...+
T Consensus       133 i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~  212 (432)
T KOG3843|consen  133 ILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAE  212 (432)
T ss_pred             cccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhh
Confidence                1    778888777432333 333322111 11122 3499999999999999999999843211       1112


Q ss_pred             C-CCeEEEeCCCCccccCccceEEEEEc--CHHHHHHHHHHhh
Q 013079          238 L-GADVVVHSISKFISGGADIIAGAVCG--PANLVNSMMDLHQ  277 (450)
Q Consensus       238 ~-g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~~~l~~~~~  277 (450)
                      . .+|.++.|+-|.|-.|   +||+++.  ++.+++.+.+...
T Consensus       213 ~grida~vqsldknf~vp---vggaiia~fk~n~iq~iak~yp  252 (432)
T KOG3843|consen  213 CGRIDAFVQSLDKNFMVP---VGGAIIAAFKDNFIQEIAKMYP  252 (432)
T ss_pred             hccHHHHHHHhhhcceee---cchhHhhHhHHHHHHHHHHhCC
Confidence            2 3689999999999876   5788754  4567777766544

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=96.95  E-value=0.0067  Score=57.00  Aligned_cols=158  Identities=15%  Similarity=0.176  Sum_probs=108.7

Q ss_pred             HHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCC---CEEEEeCCCchhHHHHHHHhCCCccCeeE----EEeC
Q 013079          104 LSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSG---GHVVAARTLYGGTHALLTHFFPRACNITT----TFVD  174 (450)
Q Consensus       104 l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v----~~v~  174 (450)
                      .-..++.+.|+.  .+-+.++   -|.-++..+.++.+|-   -+|+...-.|++-+.++...++ +.|+.+    +.+.
T Consensus       116 il~l~~~iVGA~e~EvavmNs---LTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~-lhG~~~e~sm~~ie  191 (465)
T KOG3846|consen  116 ILPLLAPIVGAQENEVAVMNS---LTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCK-LHGISPENSMIQIE  191 (465)
T ss_pred             hhhhhhhhccCCchhhhhHhh---hhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhh-hcCCChHHheEEec
Confidence            344566777774  3566777   7777888888887764   3688888777776555543332 245432    1222


Q ss_pred             CC------CHHHHHHhhhc--CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEE
Q 013079          175 IS------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVV  244 (450)
Q Consensus       175 ~~------d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~  244 (450)
                      +.      ..+++.+.|+.  +..++|++..++.-||...++.+|...-+..|+++-.|-++  +.+....-++|+|+.+
T Consensus       192 PREGEetlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFAC  271 (465)
T KOG3846|consen  192 PREGEETLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFAC  271 (465)
T ss_pred             ccccccchhHHHHHHHHHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEE
Confidence            11      34555555532  45678889999999999999999997767789999999886  5555555677999999


Q ss_pred             eCCCCccccCccceEEEEEcC
Q 013079          245 HSISKFISGGADIIAGAVCGP  265 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~~  265 (450)
                      ....|++....+-|||..+-.
T Consensus       272 WCSYKYlnaGaGgIgGlFvHe  292 (465)
T KOG3846|consen  272 WCSYKYLNAGAGGIGGLFVHE  292 (465)
T ss_pred             EeeecccccCCCccceeeeeh
Confidence            999999875444477776643

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=95.25  E-value=1  Score=42.39  Aligned_cols=244  Identities=14%  Similarity=0.132  Sum_probs=122.7

Q ss_pred             ChhHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHHHHHhc--cCC---CEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           98 NPTVLNLSRQMAALEGTEA---AYCTASDKAGMSAISSVLMQLC--SSG---GHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~---~~~tsg~~~gt~ai~~al~~l~--~~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ...++..+..+.++++...   ++|.-|+  ||.-..++...++  +.|   |-|++-..+-.+..+.-+      +|..
T Consensus        51 ~kii~~tes~lreLlniPdn~~vlf~QGG--Gt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk------~~~~  122 (370)
T KOG2790|consen   51 AKIINDTESLLRELLNIPDNYKVLFLQGG--GTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKK------YGTP  122 (370)
T ss_pred             HHHHHHHHHHHHHHHcCCCceeEEEEeCC--CcccccccchhhhccccCCccceEEeccccHHHHHHHHh------hCCc
Confidence            3567888888888988543   4555431  6665555555554  444   567777665555544432      2211


Q ss_pred             -E--------EEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCC-C
Q 013079          170 -T--------TFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-G  239 (450)
Q Consensus       170 -v--------~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~-g  239 (450)
                       .        .|-.++|.+.++.   +++.+.|+.|.  |+|-.-.....+- +-.-+|.++|+|-. +.+.-.|.+. .
T Consensus       123 ~~V~~~~k~y~ygkvPd~~~w~~---~~da~yvyyCa--NETVHGVEf~~~P-~~~~~~~vlVaDmS-SnflSrpvDvsk  195 (370)
T KOG2790|consen  123 NIVIPKLKSYTYGKVPDPSTWEL---NPDASYVYYCA--NETVHGVEFDFIP-VNDPKGAVLVADMS-SNFLSRPVDVSK  195 (370)
T ss_pred             eEEeccccccccCcCCChhhccc---CCCccEEEEec--CceeeceecCCCC-CCCCCCceEEEecc-cchhcCCccchh
Confidence             1        1112347776654   55677777753  4442211111111 12346889999965 3333333333 2


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh-----------hhhhccCCCchHHHHHHHHccC---CcHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-----------GALMLLGPTMNPKVAFELSERI---PHLGLR  305 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-----------~~~~~~g~~~~~~~a~~~~~~~---~~l~~~  305 (450)
                      .+++.....|.+|+.|..   .++.+++++........           .....+.++......-+.+..+   -.+...
T Consensus       196 ~gvi~aGAQKN~G~aG~T---vvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~  272 (370)
T KOG2790|consen  196 FGVIFAGAQKNVGPAGVT---VVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAM  272 (370)
T ss_pred             cceEEeccccccCccccE---EEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHH
Confidence            457788899999998843   34555566543322110           0111222222222222222211   112222


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013079          306 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ  373 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~  373 (450)
                      .+...+....+-+.+.+...-...|-.+.      .++.        ..+.|++...+.-.+|+....
T Consensus       273 e~~n~~KskllYd~iD~s~gfy~cpVe~~------~RS~--------MNV~Fri~~d~Le~eFLkeA~  326 (370)
T KOG2790|consen  273 EKLNQEKSKLLYDAIDNSNGFYRCPVEPS------VRSR--------MNVPFRIEKDELEAEFLKEAA  326 (370)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEcccchh------hhhh--------cccceeecchHHHHHHHHHHH
Confidence            23345566778888877633223333221      1111        147788876655567776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	450
3mkj_A	398	Methionine Gamma-Lyase From Citrobacter Freundii Wi		2e-54
3jw9_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-53
3jwa_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-53
2rfv_A	398	High Resolution Structure Of L-Methionine Gamma-Lya		3e-53
1y4i_A	398	Crystal Structure Of Citrobacter Freundii L-Methion		5e-53
1pg8_A	398	Crystal Structure Of L-Methionine Alpha-, Gamma-Lya		3e-47
1e5e_A	404	Methionine Gamma-Lyase (Mgl) From Trichomonas Vagin		1e-46
3vk2_A	398	Crystal Structure Of L-Methionine Gamma-Lyase From		2e-46
1gc0_A	398	Crystal Structure Of The Pyridoxal-5'-Phosphate Dep		2e-46
3e6g_A	400	Crystal Structure Of Xometc, A Cystathionine C-Lyas		2e-42
3aej_A	389	Reaction Intermediate Structure Of Entamoeba Histol		1e-41
3acz_A	389	Crystal Structure Of Entamoeba Histolytica Methioni		6e-41
1pff_A	331	Crystal Structure Of Homocysteine Alpha-, Gamma-Lya		2e-40
1qgn_A	445	Cystathionine Gamma-Synthase From Nicotiana Tabacum		9e-40
3ndn_A	414	Crystal Structure Of O-Succinylhomoserine Sulfhydry		5e-32
1cs1_A	386	Cystathionine Gamma-Synthase (Cgs) From Escherichia		1e-31
1ibj_A	464	Crystal Structure Of Cystathionine Beta-Lyase From		8e-30
2nmp_A	403	Crystal Structure Of Human Cystathionine Gamma Lyas		1e-29
3elp_B	410	Structure Of Cystationine Gamma Lyase Length = 410		1e-29
1n8p_A	393	Crystal Structure Of Cystathionine Gamma-lyase From		2e-29
2ctz_A	421	Crystal Structure Of O-Acetyl Homoserine Sulfhydryl		3e-29
3qhx_A	392	Crystal Structure Of Cystathionine Gamma-Synthase M		2e-28
2cb1_A	412	Crystal Structure Of O-Actetyl Homoserine Sulfhydry		6e-28
3ri6_A	430	A Novel Mechanism Of Sulfur Transfer Catalyzed By O		2e-27
1cl2_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		2e-16
2fq6_A	415	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		2e-16
1cl1_A	395	Cystathionine Beta-Lyase (Cbl) From Escherichia Col		8e-16

>pdb|3MKJ|A Chain A, Methionine Gamma-Lyase From Citrobacter Freundii With Pyridoximine-5'- Phosphate Length = 398

Iteration: 1
 Score =  210 bits (534), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 205/371 (55%), Gaps = 20/371 (5%)
Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G ++  I  ++TF     E     FA E       +IY+R  NPT   L +++A LE  E
Sbjct: 25  GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
           A   TAS   G+SAI++ L+ LC  G H+V+A  +YG THA L+H  P+   I  +FVD 
Sbjct: 81  AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGXTHAFLSHSMPK-FGINVSFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
           +  E + +A+ +  TKV+Y E+ +NPTL++ +I  ++ +AH +G  +VVDNTF SP    
Sbjct: 137 AKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYXQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
           P +LGAD+VVHS++K+I+G  D+I G + G    ++    +  G   + G  M+P  A+ 
Sbjct: 196 PLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGXMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
               +  LG+RM+ HC  AL  AR ++      +V YPGL  HP +EL +   +     G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
           G++  ++    +A R M    N  +   +AVSLG  ETL+          +  EE+  AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
           I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378

>pdb|3JW9|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With S-Ethyl-Cysteine Length = 398

Iteration: 1
 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 20/371 (5%)
Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G ++  I  ++TF     E     FA E       +IY+R  NPT   L +++A LE  E
Sbjct: 25  GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
           A   TAS   G+SAI++ L+ LC  G H+V+A  +YG THA L+H  P+   I  +FVD 
Sbjct: 81  AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVSFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
           +  E + +A+ +  TKV+Y E+ +NPTL++ +I  ++ +AH +G  +VVDNTF SP    
Sbjct: 137 AKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
           P +LGAD+VVHS++ +I+G  D+I G + G    ++    +  G   + G  M+P  A+ 
Sbjct: 196 PLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
               +  LG+RM+ HC  AL  AR ++      +V YPGL  HP +EL +   +     G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
           G++  ++    +A R M    N  +   +AVSLG  ETL+          +  EE+  AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
           I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378

>pdb|3JWA|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii With Methionine Phosphinate Length = 398

Iteration: 1
 Score =  206 bits (525), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 20/371 (5%)
Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G ++  I  ++TF     E     FA E       +IY+R  NPT   L +++A LE  E
Sbjct: 25  GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
           A   TAS   G+SAI++ L+ LC  G H+V+A  +YG THA L+H  P+   I  +FVD 
Sbjct: 81  AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVSFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
           +  E + +A+ +  TKV+Y E+ +NPTL++ +I  ++ +AH +G  +VVDNTF SP    
Sbjct: 137 AKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
           P +LGAD+VVHS++ +I+G  D+I G + G    ++    +  G   + G  M+P  A+ 
Sbjct: 196 PLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
               +  LG+RM+ HC  AL  AR ++      +V YPGL  HP +EL +   +     G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
           G++  ++    +A R M    N  +   +AVSLG  ETL+          +  EE+  AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
           I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378

>pdb|2RFV|A Chain A, High Resolution Structure Of L-Methionine Gamma-Lyase From Citrobacter Freundii Length = 398

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 203/371 (54%), Gaps = 20/371 (5%)
Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G ++  I  ++TF     E     FA E       +IY+R  NPT   L +++A LE  E
Sbjct: 25  GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
           A   TAS   G+SAI++ L+ LC  G H+V+A  +YG THA L+H  P+   I   FVD 
Sbjct: 81  AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
           +  E + +A+ +  TKV+Y E+ +NPTL++ +I  ++ +AH +G  +VVDNTF SP    
Sbjct: 137 AKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
           P +LGAD+VVHS++ +I+G  D+I G + G    ++    +  G   + G  M+P  A+ 
Sbjct: 196 PLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
               +  LG+RM+ HC  AL  AR ++      +V YPGL  HP +EL +   +     G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
           G++  ++    +A R M    N  +   +AVSLG  ETL+          +  EE+  AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
           I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378

>pdb|1Y4I|A Chain A, Crystal Structure Of Citrobacter Freundii L-Methionine-Lyase Length = 398

Iteration: 1
 Score =  205 bits (521), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 202/371 (54%), Gaps = 20/371 (5%)
Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G ++  I  ++TF     E     FA E       +IY+R  NPT   L +++A LE  E
Sbjct: 25  GALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE 80
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
           A   TAS   G+SAI++ L+ LC  G H+V+A  +YG THA L+H  P+   I   FVD 
Sbjct: 81  AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDA 136
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
              E + +A+ +  TKV+Y E+ +NPTL++ +I  ++ +AH +G  +VVDNTF SP    
Sbjct: 137 GKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ 195
Query: 235 PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE 294
           P +LGAD+VVHS++ +I+G  D+I G + G    ++    +  G   + G  M+P  A+ 
Sbjct: 196 PLQLGADIVVHSVTXYINGHGDVIGGIIVGKQEFIDQARFV--GLKDITGGCMSPFNAWL 253
Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFG 352
               +  LG+RM+ HC  AL  AR ++      +V YPGL  HP +EL +   +     G
Sbjct: 254 TLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP---G 310
Query: 353 GLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAG 412
           G++  ++    +A R M    N  +   +AVSLG  ETL+          +  EE+  AG
Sbjct: 311 GIISFEIAGGLEAGRRMI---NSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAG 367
Query: 413 ISAGLVRMSVG 423
           I+ GL+R+SVG
Sbjct: 368 ITDGLIRLSVG 378

>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase Length = 398

Iteration: 1
 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 206/392 (52%), Gaps = 26/392 (6%)
Query: 54  EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
           +HGG  +  +  +ATFT    E     FAGE    +    YSR  NPT+  L  +MA+LE
Sbjct: 23  DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
           G EA    AS   GM AI+S L  L   G  V+   TLYG T A L H       +    
Sbjct: 79  GGEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRH 134
Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
           VD++D + + +A+    T+V+YFES +NP + +A+I  ++++A   G TVVVDNT+ +P 
Sbjct: 135 VDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY 193
Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
           +  P  LGAD+VVHS +K++SG  DI AG V G   LV+ +    QG   + G  ++P  
Sbjct: 194 LQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHD 251
Query: 292 AFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKE 348
           A  L   I  L LRM  HC  A + A    R  ++ L + YPGL   P + L +   ++ 
Sbjct: 252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP 310
Query: 349 YGFGGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEE 407
              GG++  +++    A  R MN LQ +++    AVSLG  E+L              EE
Sbjct: 311 ---GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEE 363
Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
           +A  GIS GLVR+SVG L  +D   +  ++AL
Sbjct: 364 RAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 394

>pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trichomonas Vaginalis In Complex With Propargylglycine Length = 404

Iteration: 1
 Score =  183 bits (465), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 209/386 (54%), Gaps = 24/386 (6%)
Query: 62  IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTA 121
           I  ++TF     +     FAG+       +IY+R  NPTV NL  ++A LE TEA   T+
Sbjct: 29  IYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATS 84
Query: 122 SDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMV 181
           S   GM AI++ ++ +  +G H+++   LYG THAL  H   +   I   F++ +    V
Sbjct: 85  S---GMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFINTAIPGEV 140
Query: 182 NSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTF-SPLVLSPARLG 239
              + +  TK++YFE+ +NPTL + ++  + + AH + GV V+ DNTF SP++ +P   G
Sbjct: 141 KKHM-KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFG 199
Query: 240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI 299
            DVVVHS +K+I+G  D++AG +CG A+L+  +  +  G   + G  ++P  A+ ++  +
Sbjct: 200 VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV--GIKDITGSVISPHDAWLITRGL 257
Query: 300 PHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 357
             L +RMK     A+  A  +K      KV YPG EDH  H++ K        +G ++  
Sbjct: 258 STLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRM---YGSMITF 314
Query: 358 DMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAG 416
            +++  E A +L++ L+       +AVSLG  E+L+          +  EE+  AGI+ G
Sbjct: 315 ILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDG 370
Query: 417 LVRMSVGYLGTLDQRWSQFEKALSRM 442
           ++R+SVG +   D+  + F++ L  +
Sbjct: 371 MIRLSVG-IEDADELIADFKQGLDAL 395

>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From Pseudomonas Putida C116h Mutant. Length = 398

Iteration: 1
 Score =  183 bits (465), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 205/392 (52%), Gaps = 26/392 (6%)
Query: 54  EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
           +HGG  +  +  +ATFT    E     FAGE    +    YSR  NPT+  L  +MA+LE
Sbjct: 23  DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
           G EA    AS   GM AI+S L  L   G  V+   TLYG T A L H       +    
Sbjct: 79  GGEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGHTFAFLHHGIGE-FGVKLRH 134
Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
           VD++D + + +A+    T+V+YFES +NP + +A+I  ++++A   G TVVVDNT+ +P 
Sbjct: 135 VDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY 193
Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
           +  P  LGAD+VVHS + ++SG  DI AG V G   LV+ +    QG   + G  ++P  
Sbjct: 194 LQRPLELGADLVVHSATXYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHD 251
Query: 292 AFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKE 348
           A  L   I  L LRM  HC  A + A    R  ++ L + YPGL   P + L +   ++ 
Sbjct: 252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP 310
Query: 349 YGFGGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEE 407
              GG++  +++    A  R MN LQ +++    AVSLG  E+L              EE
Sbjct: 311 ---GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEE 363
Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
           +A  GIS GLVR+SVG L  +D   +  ++AL
Sbjct: 364 RAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 394

>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent L- Methionine Gamma-Lyase From Pseudomonas Putida Length = 398

Iteration: 1
 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/392 (36%), Positives = 205/392 (52%), Gaps = 26/392 (6%)
Query: 54  EHGGVNMS-IEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE 112
           +HGG  +  +  +ATFT    E     FAGE    +    YSR  NPT+  L  +MA+LE
Sbjct: 23  DHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLE 78
Query: 113 GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF 172
           G EA    AS   GM AI+S L  L   G  V+   TLYG T A L H       +    
Sbjct: 79  GGEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRH 134
Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL 231
           VD++D + + +A+    T+V+YFES +NP + +A+I  ++++A   G TVVVDNT+ +P 
Sbjct: 135 VDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY 193
Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
           +  P  LGAD+VVHS + ++SG  DI AG V G   LV+ +    QG   + G  ++P  
Sbjct: 194 LQRPLELGADLVVHSATXYLSGHGDITAGIVVGSQALVDRIR--LQGLKDMTGAVLSPHD 251
Query: 292 AFELSERIPHLGLRMKEHCHRALIFAR---RMKKLGLKVLYPGLEDHPHHELLKSMANKE 348
           A  L   I  L LRM  HC  A + A    R  ++ L + YPGL   P + L +   ++ 
Sbjct: 252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVEL-IHYPGLASFPQYTLARQQMSQP 310
Query: 349 YGFGGLLCLDMETEEKAN-RLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEE 407
              GG++  +++    A  R MN LQ +++    AVSLG  E+L              EE
Sbjct: 311 ---GGMIAFELKGGIGAGRRFMNALQLFSR----AVSLGDAESLAQHPASMTHSSYTPEE 363
Query: 408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
           +A  GIS GLVR+SVG L  +D   +  ++AL
Sbjct: 364 RAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 394

>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like Protein From Xanthomonas Oryzae Pv.Oryzae Length = 400

Iteration: 1
 Score =  170 bits (430), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 196/391 (50%), Gaps = 26/391 (6%)
Query: 55  HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
           HGG +      +T  VM P      +A     +   F YSR  NPT     R +AALEG 
Sbjct: 26  HGGQSPD---PSTGAVMPPIYATSTYAQSSPGEHQGFEYSRTHNPTRFAYERCVAALEGG 82
Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174
             A+  AS   GM+A S+V M+L  +G HVVA   LYGGT  L      R   +  +FVD
Sbjct: 83  TRAFAFAS---GMAATSTV-MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL 233
           ++D     +AI +  TK+++ E+ +NP L + +I  ++ +A   G+  VVDNTF SP++ 
Sbjct: 139 LTDPAAFKAAI-RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ 197
Query: 234 SPARLGADVVVHSISKFISGGADIIAG-AVCGP-ANLVNSMMDLHQGALMLLGPTMNPKV 291
            P  LGAD+VVHS +K+++G +D++ G AV G  A L   M  L       +G    P  
Sbjct: 198 RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS----IGGVQGPFD 253
Query: 292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEY 349
           +F     +  L LRM+ HC  AL  A+ ++      KV+YPGL  HP H L K    +  
Sbjct: 254 SFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAK---RQMS 310
Query: 350 GFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEK 408
           GFGG++ + ++   + A R     + +     +A SLG  E+L+          +    +
Sbjct: 311 GFGGIVSIVLKGGFDAAKRFCEKTELFT----LAESLGGVESLVNHPAVMTHASIPVARR 366
Query: 409 ALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
              GIS  LVR+SVG     D R    E+AL
Sbjct: 367 EQLGISDALVRLSVGIEDLGDLR-GDLERAL 396

>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Tetramer Containing Michaelis Complex And Methionine- Pyridoxal-5'-Phosphate Length = 389

Iteration: 1
 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 185/352 (52%), Gaps = 21/352 (5%)
Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           IYSR  NPTV      + ++EG   A  +A+  +GM AISS  +     G H++A  TLY
Sbjct: 52  IYSRLGNPTVEQFEEMVCSIEG---AAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLY 108
Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           G T +L TH+ PR   I    +D SD E V +A  +  TK++Y ES +NPT  V++I  +
Sbjct: 109 GCTVSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSDIKGI 166
Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLV 269
           + + H++G  +VVD TF SP  L P  LGAD+ +HS+SK+I+G  D+I G      A  +
Sbjct: 167 AVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDI 226
Query: 270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKV 327
            ++    + A    G  M P  AF  +  +  L +RM+ H    L  A+ +++    +KV
Sbjct: 227 ATIKFYRKDA----GSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKV 282
Query: 328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 387
            +PGLE  P H++ K       G+G     +M++ E A +LM +L+       +AVSLG 
Sbjct: 283 NHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSFEAAKKLMEHLKVCT----LAVSLGC 335
Query: 388 YETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
            +TL+          +        GI+  LVR+SVG +  +D   +  ++AL
Sbjct: 336 VDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQAL 386

>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine Gamma-Lyase 1 Length = 389

Iteration: 1
 Score =  164 bits (416), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 184/352 (52%), Gaps = 21/352 (5%)
Query: 92  IYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY 151
           IYSR  NPTV      + ++EG   A  +A+  +GM AISS  +     G H++A  TLY
Sbjct: 52  IYSRLGNPTVEQFEEMVCSIEG---AAGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLY 108
Query: 152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL 211
           G T +L TH+ PR   I    +D SD E V +A  +  TK++Y ES +NPT  V++I  +
Sbjct: 109 GCTVSLFTHWLPRF-GIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSDIKGI 166
Query: 212 SRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLV 269
           + + H++G  +VVD TF SP  L P  LGAD+ +HS+S +I+G  D+I G      A  +
Sbjct: 167 AVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSXYINGHGDVIGGVSSAKTAEDI 226
Query: 270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKV 327
            ++    + A    G  M P  AF  +  +  L +RM+ H    L  A+ +++    +KV
Sbjct: 227 ATIKFYRKDA----GSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKV 282
Query: 328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY 387
            +PGLE  P H++ K       G+G     +M++ E A +LM +L+       +AVSLG 
Sbjct: 283 NHPGLESFPGHDIAKKQMT---GYGSTFLFEMKSFEAAKKLMEHLKVCT----LAVSLGC 335
Query: 388 YETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
            +TL+          +        GI+  LVR+SVG +  +D   +  ++AL
Sbjct: 336 VDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADLKQAL 386

>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At 1.8 Angstroms Length = 331

Iteration: 1
 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 177/325 (54%), Gaps = 20/325 (6%)
Query: 104 LSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP 163
           L  ++A LE  EA   TAS   GM AI++ +     +G H+++   LYG THAL  H   
Sbjct: 3   LEGKIAKLEHAEACAATAS---GMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQL- 58
Query: 164 RACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTV 222
           R   +   F+D++    +   + +  T+++YFE+ +NPTL V +I +  + A   K + V
Sbjct: 59  RKFGVEVDFIDMAVPGNIEKHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILV 117
Query: 223 VVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM 281
           +VDNTF SP++ +P  LG D+VVHS +K+I+G  D++AG VC  A+++  +    QG   
Sbjct: 118 IVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKS--QGIKD 175
Query: 282 LLGPTMNPKVAFELSERIPHLGLRMK---EHCHRALIFARRMKKLGLKVLYPGLEDHPHH 338
           + G  ++P  A+ ++     L +R+K   E+  +   F    K +  KV YPGL DHP H
Sbjct: 176 ITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVK-KVYYPGLPDHPGH 234
Query: 339 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXX 398
           E+ K        FG ++  D++  EKA ++++     +    +AVSLG  E+L+      
Sbjct: 235 EIAKKQMKM---FGSMIAFDVDGLEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASM 287
Query: 399 XXXELNAEEKALAGISAGLVRMSVG 423
               +  EE+  AG++  L+R+SVG
Sbjct: 288 THAGVPKEEREAAGLTDNLIRLSVG 312

>pdb|1QGN|A Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum Length = 445

Iteration: 1
 Score =  161 bits (407), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 175/340 (51%), Gaps = 19/340 (5%)
Query: 88  RDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA 147
           R  F Y R+ NPT + L  +++ALEG E+    AS   GM A + +L+ L  +GGH+V  
Sbjct: 103 RASFEYGRYGNPTTVVLEEKISALEGAESTLLMAS---GMCASTVMLLALVPAGGHIVTT 159
Query: 148 RTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN 207
              Y  T   +    P+   IT T +D +D   +  A+ Q +  + + ES +NP L   +
Sbjct: 160 TDCYRKTRIFIETILPKM-GITATVIDPADVGALELALNQKKVNLFFTESPTNPFLRCVD 218
Query: 208 IPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA 266
           I  +S+L H+KG  V +D TF +PL      LGAD+V+HS +KF+ G  D++AG + GP 
Sbjct: 219 IELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPL 278
Query: 267 NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-- 324
            LV+ + +LH     +LG  +NP  A+ +   +  L LR+++    AL  A  ++     
Sbjct: 279 KLVSEIRNLHH----ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 334
Query: 325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAV 383
             V YPGL+ HP H + K       GFGG +  +++ +     + ++ L    +  ++A 
Sbjct: 335 RHVYYPGLQSHPEHHIAKKQMT---GFGGAVSFEVDGDLLTTAKFVDAL----KIPYIAP 387
Query: 384 SLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
           S G  E+++         +L+  ++A  GI   LVR S G
Sbjct: 388 SFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG 427

>pdb|3NDN|A Chain A, Crystal Structure Of O-Succinylhomoserine Sulfhydrylase From Mycobacterium Tuberculosis Covalently Bound To Pyridoxal-5- Length = 414

Iteration: 1
 Score =  135 bits (339), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 179/369 (48%), Gaps = 24/369 (6%)
Query: 78  RMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL 137
           + FAGEL    D ++YSR+ NPTV     ++  +EG  AA+ TAS   GM+A+ + L  L
Sbjct: 64  KSFAGEL----DHYVYSRYGNPTVSVFEERLRLIEGAPAAFATAS---GMAAVFTSLGAL 116
Query: 138 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 197
             +G  +VAAR+L+G    + +   PR   + T FVD  D      A+    T+ ++FE+
Sbjct: 117 LGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFET 174
Query: 198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGAD 256
            SNP  ++ +I  ++ LAH  G  VV+DN F +PL+     LG DVVV+S +  I G   
Sbjct: 175 PSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTXHIDGQGR 234
Query: 257 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 316
           ++ GA+ G    ++  +   Q  +   GP M+   A+ L + +  L +R++     A   
Sbjct: 235 VLGGAILGDREYIDGPV---QKLMRHTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRI 291
Query: 317 ARRMK--KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL---CLDMETEEKANRLMNY 371
           A  +        V YP L  HP ++L    A ++   GG +    LD   +    R    
Sbjct: 292 AEFLNGHPSVRWVRYPYLPSHPQYDL----AKRQMSGGGTVVTFALDCPEDVAKQRAFEV 347
Query: 372 LQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQR 431
           L        ++ +LG  ++L+          +  E +A  G+  G+VR+SVG L   D  
Sbjct: 348 LDKMRLID-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LEDTDDL 405
Query: 432 WSQFEKALS 440
            +  ++ALS
Sbjct: 406 IADIDRALS 414

>pdb|1CS1|A Chain A, Cystathionine Gamma-Synthase (Cgs) From Escherichia Coli Length = 386

Iteration: 1
 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 167/333 (50%), Gaps = 15/333 (4%)
Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG 152
           YSR  NPT   + R +A LEG   A  T     GMSAI  V       G  +VA    YG
Sbjct: 46  YSRRGNPTRDVVQRALAELEGGAGAVLT---NTGMSAIHLVTTVFLKPGDLLVAPHDCYG 102
Query: 153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS 212
           G++ L      R C     FVD  D + + +A+ + + K++  ES SNP L V +I ++ 
Sbjct: 103 GSYRLFDSLAKRGC-YRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKIC 160
Query: 213 RLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS 271
            LA + G   VVDNTF SP + +P  LGAD+V+HS + +++G +D++AG V      V +
Sbjct: 161 HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTXYLNGHSDVVAGVVIAKDPDVVT 220
Query: 272 MMDLHQGALMLLGPTMNPKVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 330
            +      + + G   +  +    L   +P + L  +    +A++   + + L  K+ +P
Sbjct: 221 ELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRN--AQAIVKYLQTQPLVKKLYHP 278
Query: 331 GLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET 390
            L ++  HE+    A ++ GFG +L  +++ +E+   L  +L   + F  +A SLG  E+
Sbjct: 279 SLPENQGHEI---AARQQKGFGAMLSFELDGDEQT--LRRFLGGLSLF-TLAESLGGVES 332
Query: 391 LMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
           L+          +  E +A AGIS  L+R+S G
Sbjct: 333 LISHAATMTHAGMAPEARAAAGISETLLRISTG 365

>pdb|1IBJ|A Chain A, Crystal Structure Of Cystathionine Beta-Lyase From Arabidopsis Thaliana Length = 464

Iteration: 1
 Score =  128 bits (321), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 177/356 (49%), Gaps = 31/356 (8%)
Query: 75  TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVL 134
           T ++  A E GP    + Y+R  NPT   L   +A L+  + A+C  S   GM+A+S+V 
Sbjct: 113 TFKQPSAIENGP----YDYTRSGNPTRDALESLLAKLDKADRAFCFTS---GMAALSAV- 164
Query: 135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY 194
             L  +G  +VA   +YGG+  LL+   PR+  +    V+ +  + V +AI   +TK+++
Sbjct: 165 THLIKNGEEIVAGDDVYGGSDRLLSQVVPRS-GVVVKRVNTTKLDEVAAAI-GPQTKLVW 222
Query: 195 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISG 253
            ES +NP   +++I ++S +AH +G  V+VDN+  SP++  P  LGAD+V+HS +KFI+G
Sbjct: 223 LESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAG 282
Query: 254 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA 313
            +D++AG +      +   +   Q +    G  + P   +     I  + LR+++    A
Sbjct: 283 HSDVMAGVLAVKGEKLAKEVYFLQNS---EGSGLAPFDCWLCLRGIKTMALRIEKQQENA 339
Query: 314 LIFA------RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR 367
              A       R+K    KV Y GL DHP H L  S A    G G +      +      
Sbjct: 340 RKIAMYLSSHPRVK----KVYYAGLPDHPGHHLHFSQAK---GAGSVFSFITGSVA---- 388
Query: 368 LMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
           L  +L    ++  +AVS G  ++L+          + AE +   G++  LVR+S G
Sbjct: 389 LSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG 444

>pdb|2NMP|A Chain A, Crystal Structure Of Human Cystathionine Gamma Lyase Length = 403

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 186/373 (49%), Gaps = 25/373 (6%)
Query: 58  VNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
           V    E   +  V+ P ++   F          F YSR  NPT   L + +AAL+G  A 
Sbjct: 26  VGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDG--AK 83
Query: 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVD 174
           YC A   +G++A  ++   L  +G  ++    +YGGT+     +F +  +   +  +FVD
Sbjct: 84  YCLAF-ASGLAATVTI-THLLKAGDQIICMDDVYGGTN----RYFRQVASEFGLKISFVD 137
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLV 232
            S  +++ +AI    TK+++ E+ +NPT  V +I   + + H  G + +VVDNTF SP  
Sbjct: 138 CSKIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF 196
Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P  LGAD+ ++S +K+++G +D++ G V      +++ +   Q +   LG   +P   
Sbjct: 197 QRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDC 253
Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           +  +  +  L +RM++H    +  A+ ++      KV+YPGL  HP HEL+K       G
Sbjct: 254 YLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---G 310
Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKAL 410
             G++   ++   +   +  +L+N   F  +A SLG +E+L           +   ++ +
Sbjct: 311 CTGMVTFYIKGTLQHAEI--FLKNLKLFT-LAESLGGFESLAELPAIMTHASVLKNDRDV 367
Query: 411 AGISAGLVRMSVG 423
            GIS  L+R+SVG
Sbjct: 368 LGISDTLIRLSVG 380

>pdb|3ELP|B Chain B, Structure Of Cystationine Gamma Lyase Length = 410

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 186/373 (49%), Gaps = 25/373 (6%)
Query: 58  VNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
           V    E   +  V+ P ++   F          F YSR  NPT   L + +AAL+G  A 
Sbjct: 30  VGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDG--AK 87
Query: 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTTFVD 174
           YC A   +G++A  ++   L  +G  ++    +YGGT+     +F +  +   +  +FVD
Sbjct: 88  YCLAF-ASGLAATVTI-THLLKAGDQIICMDDVYGGTN----RYFRQVASEFGLKISFVD 141
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLV 232
            S  +++ +AI    TK+++ E+ +NPT  V +I   + + H  G + +VVDNTF SP  
Sbjct: 142 CSKIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF 200
Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P  LGAD+ ++S +K+++G +D++ G V      +++ +   Q +   LG   +P   
Sbjct: 201 QRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDC 257
Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           +  +  +  L +RM++H    +  A+ ++      KV+YPGL  HP HEL+K       G
Sbjct: 258 YLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---G 314
Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKAL 410
             G++   ++   +   +  +L+N   F  +A SLG +E+L           +   ++ +
Sbjct: 315 CTGMVTFYIKGTLQHAEI--FLKNLKLFT-LAESLGGFESLAELPAIMTHASVLKNDRDV 371
Query: 411 AGISAGLVRMSVG 423
            GIS  L+R+SVG
Sbjct: 372 LGISDTLIRLSVG 384

>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast Length = 393

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 189/389 (48%), Gaps = 45/389 (11%)
Query: 55  HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
           HG V   I  S TF    P       A  +G     + YSR  NP   NL R +AALE  
Sbjct: 22  HGSVIEPISLSTTFKQSSP-------ANPIGT----YEYSRSQNPNRENLERAVAALENA 70
Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN---ITTT 171
           +     +S     SA ++ ++Q    G H V+   +YGGTH     +F +  N   + T+
Sbjct: 71  QYGLAFSSG----SATTATILQSLPQGSHAVSIGDVYGGTH----RYFTKVANAHGVETS 122
Query: 172 FVDISDHEMVNS--AIVQGRTKVLYFESISNPTLAVANIPELSRL----AHDKGVTVVVD 225
           F +    +++N    +++  TK+++ E+ +NPTL V +I +++ L    A  + V +VVD
Sbjct: 123 FTN----DLLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178
Query: 226 NTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLG 284
           NTF SP + +P   GAD+VVHS +K+I+G +D++ G +      +   +   Q A   +G
Sbjct: 179 NTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---IG 235
Query: 285 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM---KKLGLKVLYPGLEDHPHHELL 341
              +P  A+     +  L LR+++    A   A  +   K+  + V YPGL+ HP+++++
Sbjct: 236 AIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVV 295
Query: 342 KSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXX 400
                   G GG++   ++   E A++  +  + +     +A SLG  E+L+        
Sbjct: 296 LKQHRDALG-GGMISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTH 350
Query: 401 XELNAEEKALAGISAGLVRMSVGYLGTLD 429
             +  E +  +G+   LVR+SVG   T D
Sbjct: 351 GGIPKEAREASGVFDDLVRISVGIEDTDD 379

>pdb|2CTZ|A Chain A, Crystal Structure Of O-Acetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8 Length = 421

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 176/399 (44%), Gaps = 49/399 (12%)
Query: 59  NMSIEASATFTVMEPETMRRMFA-GELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA 117
            + I  + ++    PE    +FA  E G      IYSR  NPTV  L +++AALEG +AA
Sbjct: 22  QVPIYPTTSYVFKSPEHAANLFALKEFG-----NIYSRIMNPTVDVLEKRLAALEGGKAA 76
Query: 118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD 177
             TAS   G +A    L  L  +G ++V+   LYGGT         R   I   F    +
Sbjct: 77  LATAS---GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREE 132
Query: 178 HEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSP 235
                 A+   +T+  + ESI NP L + ++  L++ A +KGV ++VDNTF     +L P
Sbjct: 133 RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRP 192
Query: 236 ARLGADVVVHSISKFISGGADIIAGAVCGPAN----------LVNSMMDLHQ-------G 278
              GA +V HS++K++ G   +IAGA+    N          L       H        G
Sbjct: 193 LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG 252
Query: 279 ALMLL-----------GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM--KKLGL 325
            L  +           G  + P  A+ +   +  L LR + H    L  A  +  +    
Sbjct: 253 ELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVA 312
Query: 326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVS 384
            V YPGL  HPHH+  +     +   G +L   ++   E A R ++ L+  +       +
Sbjct: 313 WVNYPGLPHHPHHDRAQKYFKGKP--GAVLTFGLKGGYEAAKRFISRLKLISHL----AN 366
Query: 385 LGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
           +G   TL          +L+ EE+A AG+S  +VR+SVG
Sbjct: 367 VGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG 405

>pdb|3QHX|A Chain A, Crystal Structure Of Cystathionine Gamma-Synthase Metb (Cgs) From Mycobacterium Ulcerans Agy99 Bound To Hepes Length = 392

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 170/372 (45%), Gaps = 33/372 (8%)
Query: 56  GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE 115
           G VN  I AS+TF               +G  R  + Y+R  NPT   L   +AA+E   
Sbjct: 34  GAVNAPIYASSTFA-----------QDGVGGLRGGYEYARTGNPTRTALEAALAAVEDAA 82
Query: 116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI 175
                +S   GM+A    L  +   G HVV     YGGT  L+   F    N+  T V +
Sbjct: 83  FGRAFSS---GMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVF-TGWNVEYTPVAL 138
Query: 176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLS 234
           +D + V +AI +  T++++ E+ +NP L++A+I  +++L  D    V+VDNTF SP +  
Sbjct: 139 ADLDAVRAAI-RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQ 197
Query: 235 PARLGADVVVHSISKFISGGADIIAGA-VCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 293
           P  LGADVV+HS + +I G +D++ GA V     L  S   L  GA    G    P  A+
Sbjct: 198 PLSLGADVVLHSTTXYIGGHSDVVGGALVTNDEELDQSFAFLQNGA----GAVPGPFDAY 253
Query: 294 ELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF 351
                +  L LRM+ H   A   A  + +      VLYPGL  HP H +    A +  GF
Sbjct: 254 LTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAV---AARQMRGF 310
Query: 352 GGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXXELNAEEKALA 411
           GG++ + M     A   +    N      +A SLG  E+L+              +    
Sbjct: 311 GGMVSVRMRAGRTAAEQLCAKTN---IFILAESLGSVESLIEHPSAMTHASTAGSQLE-- 365
Query: 412 GISAGLVRMSVG 423
            +   LVR+SVG
Sbjct: 366 -VPDDLVRLSVG 376

>pdb|2CB1|A Chain A, Crystal Structure Of O-Actetyl Homoserine Sulfhydrylase From Thermus Thermophilus Hb8,Oah2 Length = 412

Iteration: 1
 Score =  121 bits (304), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 123/420 (29%), Positives = 189/420 (45%), Gaps = 62/420 (14%)
Query: 55  HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
           HG V + I A A +     E  +  FA   G     ++Y+R  +PT   L  ++ ALEG 
Sbjct: 17  HGAVGLPIYAVAAYGFKTLEEGQERFATGEG-----YVYARQKDPTAKALEERLKALEGA 71
Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174
             A   AS   G +A  + L+ L   G  VVAA+ L+G T  L          +T  +VD
Sbjct: 72  LEAVVLAS---GQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVL-SLMGVTVRYVD 127
Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLV 232
             + E V  A+   +T+ ++ E+++NP L V ++  L+ LA + GV +VVDNTF  +  +
Sbjct: 128 -PEPEAVREAL-SAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL 185
Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P   GA VVV S++ + SG   ++ GAV      ++   +L +     L P +  ++ 
Sbjct: 186 CRPLAWGAHVVVESLTXWASGHGSVLGGAV------LSRETELWRNYPQFLQPDLKGQIP 239
Query: 293 FE------LSERIPHLG------------------------LRMKEHCHRALIFARRMK- 321
           +E        ER+  LG                        LR+      A   A R++ 
Sbjct: 240 WEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQG 299
Query: 322 KLGLKVL-YPGLEDHPHHELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFG 379
              +K L YPGL + P H      A K    GG +L LD+   E+A+R +  ++      
Sbjct: 300 HPKVKALRYPGLPEDPAHR----NARKYLASGGPILTLDLGDLERASRFLGAIRL----- 350
Query: 380 FMAVSLGYYETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
             A +LG   TL+          L  E +  AG++ GLVR+SVG    LD   + FE+AL
Sbjct: 351 LKAANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDL-LALFEEAL 409

>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By O-Acetylhomoserine Sulfhydrylase In Methionine Biosynthetic Pathway Of Wolinella Succinogenes Length = 430

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 190/395 (48%), Gaps = 48/395 (12%)
Query: 55  HGGVNMSIEASATFTVMEPETMRRMFAGE-LGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           HG +   +  +A F     + + ++  G  LG      +YSR  NPTV +L +++  L G
Sbjct: 42  HGALRTPVYDNAAFEFENSDEIAQVSLGRALG-----HVYSRSSNPTVEDLEQRLKNLTG 96
Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
                   S   GM+AIS+ ++ L  +G  VV    L+G T +L     P +  I   FV
Sbjct: 97  ALGVLALGS---GMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLP-SFGIEVRFV 152
Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLV 232
           D+ D   V  A  +  TK+L+ E+ISNP L VA++  LS++ H KG+ +VVD T + P +
Sbjct: 153 DVMDSLAVEHACDET-TKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL 211
Query: 233 LSPARLGADVVVHSISKFISGGADIIAG--------------------AVCGP-ANLVNS 271
           L   RLG D+ V S +KFISGG   + G                    A  GP A L  +
Sbjct: 212 LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKA 271
Query: 272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLK--VLY 329
             ++ Q     LGP+++P  A+  S  +  + LR++  C  A   A  +  +     V +
Sbjct: 272 RKEVFQN----LGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNH 327
Query: 330 PGLEDHPHHELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY 388
           P L D P +    ++A +++ + G +L  ++E++E + R M+ L+   +    A ++   
Sbjct: 328 PSLPDSPFY----AIAKRQFRYAGSILTFELESKEASYRFMDALKLIRR----ATNIHDN 379
Query: 389 ETLMXXXXXXXXXELNAEEKALAGISAGLVRMSVG 423
           ++L+           + EE+    IS  ++R+SVG
Sbjct: 380 KSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG 414

>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With Aminoethoxyvinylglycine Length = 395

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 42/401 (10%)
Query: 56  GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
           G VN  I+  +S  F  +E +    R    GEL        Y R    T  +L + M  L
Sbjct: 22  GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 74
Query: 112 EGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171
           EG   A C      G +A+++ ++     G HV+   T Y  +    +    +   +TT+
Sbjct: 75  EG--GAGCVLF-PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTS 130
Query: 172 FVDISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDN 226
           + D     ++ + IV   Q  TK+++ ES  + T+ V ++P +            +++DN
Sbjct: 131 WFD----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 186
Query: 227 TFSPLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLG 284
           T++  VL  A   G DV + + +K++ G +D + G AVC           L + A  L+G
Sbjct: 187 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMG 241
Query: 285 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLK 342
             ++   A+  S  +  LG+R+++H   +L  A  + +     +V +P L     HE  K
Sbjct: 242 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 301
Query: 343 SMANKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXX 401
               +++ G  GL    ++ +     L NYL N++ F  MA S G YE+L+         
Sbjct: 302 ----RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIA 356
Query: 402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
            +  + +     S  L+R+ +G L  +D   +  +   +R+
Sbjct: 357 AIRPQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 394

>pdb|2FQ6|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In Complex With N-Hydrazinocarbonylmethyl-2-Trifluoromethyl-Benzamide Length = 415

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 42/401 (10%)
Query: 56  GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
           G VN  I+  +S  F  +E +    R    GEL        Y R    T  +L + M  L
Sbjct: 42  GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 94
Query: 112 EGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171
           EG   A C      G +A+++ ++     G HV+   T Y  +    +    +   +TT+
Sbjct: 95  EG--GAGCVLF-PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTS 150
Query: 172 FVDISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDN 226
           + D     ++ + IV   Q  TK+++ ES  + T+ V ++P +            +++DN
Sbjct: 151 WFD----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 206
Query: 227 TFSPLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLG 284
           T++  VL  A   G DV + + +K++ G +D + G AVC           L + A  L+G
Sbjct: 207 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMG 261
Query: 285 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLK 342
             ++   A+  S  +  LG+R+++H   +L  A  + +     +V +P L     HE  K
Sbjct: 262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 321
Query: 343 SMANKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXX 401
               +++ G  GL    ++ +     L NYL N++ F  MA S G YE+L+         
Sbjct: 322 ----RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIA 376
Query: 402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
            +  + +     S  L+R+ +G L  +D   +  +   +R+
Sbjct: 377 AIRPQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 414

>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli Length = 395

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 175/401 (43%), Gaps = 42/401 (10%)
Query: 56  GGVNMSIE--ASATFTVMEPE--TMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL 111
           G VN  I+  +S  F  +E +    R    GEL        Y R    T  +L + M  L
Sbjct: 22  GAVNSVIQRASSLVFDSVEAKKHATRNRANGEL-------FYGRRGTLTHFSLQQAMCEL 74
Query: 112 EGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT 171
           EG   A C      G +A+++ ++     G HV+   T Y  +    +    +   +TT+
Sbjct: 75  EG--GAGCVLF-PCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTS 130
Query: 172 FVDISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDN 226
           + D     ++ + IV   Q  TK+++ ES  + T+ V ++P +            +++DN
Sbjct: 131 WFD----PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 186
Query: 227 TFSPLVLSPA-RLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLG 284
           T++  VL  A   G DV + + + ++ G +D + G AVC           L + A  L+G
Sbjct: 187 TWAAGVLFKALDFGIDVSIQAATXYLVGHSDAMIGTAVCN----ARCWEQLRENA-YLMG 241
Query: 285 PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLK 342
             ++   A+  S  +  LG+R+++H   +L  A  + +     +V +P L     HE  K
Sbjct: 242 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 301
Query: 343 SMANKEY-GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMXXXXXXXXX 401
               +++ G  GL    ++ +     L NYL N++ F  MA S G YE+L+         
Sbjct: 302 ----RDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIA 356
Query: 402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
            +  + +     S  L+R+ +G L  +D   +  +   +R+
Sbjct: 357 AIRPQGE--IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 394

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	1e-107
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	1e-107
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	1e-106
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	1e-106
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	1e-104
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	1e-103
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	2e-92
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	3e-92
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	3e-92
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	5e-92
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	3e-91
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	5e-90
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	1e-89
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	6e-86
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	5e-78
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	9e-75
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	1e-72
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	1e-47
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	1e-46
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	7e-45
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	3e-44
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	1e-39
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	3e-06
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	1e-05
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	2e-05
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	4e-05
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	4e-05
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	8e-05

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* Length = 445

 Score =  323 bits (831), Expect = e-107
 Identities = 108/374 (28%), Positives = 180/374 (48%), Gaps = 23/374 (6%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
               +   +  ++ +   +   +           R  F Y R+ NPT + L  +++ALEG
Sbjct: 73  VTDAITTPVVNTSAYFFNKTSELIDFKEKR----RASFEYGRYGNPTTVVLEEKISALEG 128

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            E+    AS   GM A + +L+ L  +GGH+V     Y  T   +    P+   IT T +
Sbjct: 129 AESTLLMAS---GMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM-GITATVI 184

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D +D   +  A+ Q +  + + ES +NP L   +I  +S+L H+KG  V +D TF +PL 
Sbjct: 185 DPADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN 244

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
                LGAD+V+HS +KF+ G  D++AG + GP  LV+ + +LH      LG  +NP  A
Sbjct: 245 QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI----LGGALNPNAA 300

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           + +   +  L LR+++    AL  A  ++       V YPGL+ HP H + K       G
Sbjct: 301 YLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---G 357

Query: 351 FGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 409
           FGG +  +++       + ++ L+       +A S G  E+++      +  +L+  ++A
Sbjct: 358 FGGAVSFEVDGDLLTTAKFVDALKIPY----IAPSFGGCESIVDQPAIMSYWDLSQSDRA 413

Query: 410 LAGISAGLVRMSVG 423
             GI   LVR S G
Sbjct: 414 KYGIMDNLVRFSFG 427

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} Length = 414

 Score =  322 bits (827), Expect = e-107
 Identities = 104/379 (27%), Positives = 185/379 (48%), Gaps = 29/379 (7%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
                  ++  ++ +         + FAGE     D ++YSR+ NPTV     ++  +EG
Sbjct: 40  GFEETAEAMYLTSGYVYGSAAVAEKSFAGE----LDHYVYSRYGNPTVSVFEERLRLIEG 95

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
             AA+ TAS   GM+A+ + L  L  +G  +VAAR+L+G    + +   PR   + T FV
Sbjct: 96  APAAFATAS---GMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRW-GVQTVFV 151

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D  D      A+    T+ ++FE+ SNP  ++ +I  ++ LAH  G  VV+DN F +PL+
Sbjct: 152 DGDDLSQWERAL-SVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLL 210

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
                LG DVVV+S +K I G   ++ GA+ G    ++  +          GP M+   A
Sbjct: 211 QQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH---TGPAMSAFNA 267

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKS-MANKEY 349
           + L + +  L +R++     A   A  +        V YP L  HP ++L K  M+    
Sbjct: 268 WVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS---- 323

Query: 350 GFGGLLCLDME-----TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN 404
           G G ++   ++      +++A  +++ ++       ++ +LG  ++L++   ++T   + 
Sbjct: 324 GGGTVVTFALDCPEDVAKQRAFEVLDKMRLID----ISNNLGDAKSLVTHPATTTHRAMG 379

Query: 405 AEEKALAGISAGLVRMSVG 423
            E +A  G+  G+VR+SVG
Sbjct: 380 PEGRAAIGLGDGVVRISVG 398

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* Length = 389

 Score =  320 bits (823), Expect = e-106
 Identities = 121/373 (32%), Positives = 185/373 (49%), Gaps = 22/373 (5%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
                   I  ++TF     +    +F G+     +  IYSR  NPTV      + ++EG
Sbjct: 18  VLHSHAYPIFQTSTFCFDSTQQGADLFMGK----GEGHIYSRLGNPTVEQFEEMVCSIEG 73

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
              +    S   GM AISS  +     G H++A  TLYG T +L TH+ PR   I    +
Sbjct: 74  AAGSAAFGS---GMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDLI 129

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D SD E V +A  +  TK++Y ES +NPT  V++I  ++ + H++G  +VVD TF SP  
Sbjct: 130 DTSDVEKVKAAW-KPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCF 188

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
           L P  LGAD+ +HS+SK+I+G  D+I G          + +  ++      G  M P  A
Sbjct: 189 LKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD---AGSLMAPMDA 245

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           F  +  +  L +RM+ H    L  A+ +++     KV +PGLE  P H++ K       G
Sbjct: 246 FLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---G 302

Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 410
           +G     +M++ E A +LM +L+       +AVSLG  +TL+    S T + +       
Sbjct: 303 YGSTFLFEMKSFEAAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRK 358

Query: 411 AGISAGLVRMSVG 423
            GI+  LVR+SVG
Sbjct: 359 QGITPELVRISVG 371

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Length = 398

 Score =  319 bits (821), Expect = e-106
 Identities = 136/376 (36%), Positives = 207/376 (55%), Gaps = 26/376 (6%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             G ++  I  ++TF     E     FA E       +IY+R  NPT   L +++A LE 
Sbjct: 23  STGALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLER 78

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            EA   TAS   G+SAI++ L+ LC  G H+V+A  +YG THA L+H  P+   I   FV
Sbjct: 79  GEAGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVRFV 134

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D +  E + +A+ +  TKV+Y E+ +NPTL++ +I  ++ +AH +G  +VVDNTF SP  
Sbjct: 135 DAAKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC 193

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKV 291
             P +LGAD+VVHS++K+I+G  D+I G + G    ++       +      G  M+P  
Sbjct: 194 QQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI---TGGCMSPFN 250

Query: 292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKS-MANKE 348
           A+     +  LG+RM+ HC  AL  AR ++      +V YPGL  HP +EL +  M+   
Sbjct: 251 AWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS--- 307

Query: 349 YGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 407
              GG++  ++    E   R++N ++       +AVSLG  ETL+    S T S +  EE
Sbjct: 308 -LPGGIISFEIAGGLEAGRRMINSVELCL----LAVSLGDTETLIQHPASMTHSPVAPEE 362

Query: 408 KALAGISAGLVRMSVG 423
           +  AGI+ GL+R+SVG
Sbjct: 363 RLKAGITDGLIRLSVG 378

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* Length = 398

 Score =  315 bits (810), Expect = e-104
 Identities = 136/375 (36%), Positives = 192/375 (51%), Gaps = 24/375 (6%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             G +   +  +ATFT    E     FAGE    +    YSR  NPT+  L  +MA+LEG
Sbjct: 24  HGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLEG 79

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            EA    AS   GM AI+S L  L   G  V+   TLYG T A L H       +    V
Sbjct: 80  GEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEF-GVKLRHV 135

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D++D + + +A+    T+V+YFES +NP + +A+I  ++++A   G TVVVDNT+ +P +
Sbjct: 136 DMADLQALEAAM-TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL 194

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPKV 291
             P  LGAD+VVHS +K++SG  DI AG V G   LV+ + +   +      G  ++P  
Sbjct: 195 QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDM---TGAVLSPHD 251

Query: 292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEY 349
           A  L   I  L LRM  HC  A + A  + +      + YPGL   P + L +   +   
Sbjct: 252 AALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS--- 308

Query: 350 GFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 408
             GG++  +++       R MN LQ ++     AVSLG  E+L     S T S    EE+
Sbjct: 309 QPGGMIAFELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEER 364

Query: 409 ALAGISAGLVRMSVG 423
           A  GIS GLVR+SVG
Sbjct: 365 AHYGISEGLVRLSVG 379

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* Length = 404

 Score =  312 bits (802), Expect = e-103
 Identities = 124/376 (32%), Positives = 203/376 (53%), Gaps = 25/376 (6%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           + G     I  ++TF     +     FAG+       +IY+R  NPTV NL  ++A LE 
Sbjct: 21  QFGAAIPPIYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNPTVSNLEGKIAFLEK 76

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
           TEA   T+S   GM AI++ ++ +  +G H+++   LYG THAL  H   +   I   F+
Sbjct: 77  TEACVATSS---GMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKF-GIQVDFI 132

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTF-SPL 231
           + +    V   + +  TK++YFE+ +NPTL + ++  + + AH + GV V+ DNTF SP+
Sbjct: 133 NTAIPGEVKKHM-KPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPM 191

Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGALMLLGPTMNPK 290
           + +P   G DVVVHS +K+I+G  D++AG +CG A+L+  + M   +      G  ++P 
Sbjct: 192 ITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI---TGSVISPH 248

Query: 291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKE 348
            A+ ++  +  L +RMK     A+  A  +K      KV YPG EDH  H++ K      
Sbjct: 249 DAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR-- 306

Query: 349 YGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE 407
             +G ++   ++   E A +L++ L+       +AVSLG  E+L+    S T + +  EE
Sbjct: 307 -MYGSMITFILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEE 361

Query: 408 KALAGISAGLVRMSVG 423
           +  AGI+ G++R+SVG
Sbjct: 362 REAAGITDGMIRLSVG 377

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} PDB: 3e6g_A* 3nnp_A* Length = 400

 Score =  284 bits (728), Expect = 2e-92
 Identities = 127/375 (33%), Positives = 192/375 (51%), Gaps = 32/375 (8%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             G V   I A++T+         +   GE       F YSR  NPT     R +AALEG
Sbjct: 34  STGAVMPPIYATSTY--------AQSSPGEHQG----FEYSRTHNPTRFAYERCVAALEG 81

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
              A+  AS   GM+A S+V+ +L  +G HVVA   LYGGT  L      R   +  +FV
Sbjct: 82  GTRAFAFAS---GMAATSTVM-ELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFV 137

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D++D     +AI +  TK+++ E+ +NP L + +I  ++ +A   G+  VVDNTF SP++
Sbjct: 138 DLTDPAAFKAAI-RADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPML 196

Query: 233 LSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQGALMLLGPTMNPKV 291
             P  LGAD+VVHS +K+++G +D++ G AV G    +   M   Q +   +G    P  
Sbjct: 197 QRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS---IGGVQGPFD 253

Query: 292 AFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEY 349
           +F     +  L LRM+ HC  AL  A+ ++      KV+YPGL  HP H L K   +   
Sbjct: 254 SFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS--- 310

Query: 350 GFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK 408
           GFGG++ + ++   + A R     + +     +A SLG  E+L++     T + +    +
Sbjct: 311 GFGGIVSIVLKGGFDAAKRFCEKTELFT----LAESLGGVESLVNHPAVMTHASIPVARR 366

Query: 409 ALAGISAGLVRMSVG 423
              GIS  LVR+SVG
Sbjct: 367 EQLGISDALVRLSVG 381

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 Length = 386

 Score =  283 bits (727), Expect = 3e-92
 Identities = 111/374 (29%), Positives = 175/374 (46%), Gaps = 31/374 (8%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
           ++G V   I  S+T+              E         YSR  NPT   + R +A LEG
Sbjct: 19  QYGCVVPPIHLSSTYNFTGF--------NEPRA----HDYSRRGNPTRDVVQRALAELEG 66

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
              A  T +   GMSAI  V       G  +VA    YGG++ L      R       FV
Sbjct: 67  GAGAVLTNT---GMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFV 122

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D  D + + +A+   + K++  ES SNP L V +I ++  LA + G   VVDNTF SP +
Sbjct: 123 DQGDEQALRAAL-AEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL 181

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
            +P  LGAD+V+HS +K+++G +D++AG V      V + +         +G T     +
Sbjct: 182 QNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN---IGVTGGAFDS 238

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           + L   +  L  RM+     A    + ++   L  K+ +P L ++  HE+         G
Sbjct: 239 YLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---G 295

Query: 351 FGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 409
           FG +L  +++  E+   R +  L  +     +A SLG  E+L+S + + T + +  E +A
Sbjct: 296 FGAMLSFELDGDEQTLRRFLGGLSLFT----LAESLGGVESLISHAATMTHAGMAPEARA 351

Query: 410 LAGISAGLVRMSVG 423
            AGIS  L+R+S G
Sbjct: 352 AAGISETLLRISTG 365

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 Length = 464

 Score =  286 bits (733), Expect = 3e-92
 Identities = 106/382 (27%), Positives = 182/382 (47%), Gaps = 31/382 (8%)

Query: 45  LASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNL 104
           L +  ++F     ++  +  +ATF                      + Y+R  NPT   L
Sbjct: 91  LVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGP------------YDYTRSGNPTRDAL 138

Query: 105 SRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR 164
              +A L+  + A+C  S   GM+A+S+V   L  +G  +VA   +YGG+  LL+   PR
Sbjct: 139 ESLLAKLDKADRAFCFTS---GMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPR 194

Query: 165 ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224
           +  +    V+ +  + V +AI   +TK+++ ES +NP   +++I ++S +AH +G  V+V
Sbjct: 195 S-GVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLV 252

Query: 225 DNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 283
           DN+  SP++  P  LGAD+V+HS +KFI+G +D++AG +      +   +   Q +    
Sbjct: 253 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS---E 309

Query: 284 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELL 341
           G  + P   +     I  + LR+++    A   A  +       KV Y GL DHP H L 
Sbjct: 310 GSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLH 369

Query: 342 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 401
            S A    G G +      +   +  L+   +    F   AVS G  ++L+S     + +
Sbjct: 370 FSQAK---GAGSVFSFITGSVALSKHLVETTK---YFSI-AVSFGSVKSLISMPCFMSHA 422

Query: 402 ELNAEEKALAGISAGLVRMSVG 423
            + AE +   G++  LVR+S G
Sbjct: 423 SIPAEVREARGLTEDLVRISAG 444

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} PDB: 3qi6_A* Length = 392

 Score =  283 bits (726), Expect = 5e-92
 Identities = 114/374 (30%), Positives = 172/374 (45%), Gaps = 33/374 (8%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             G VN  I AS+TF             G +G  R  + Y+R  NPT   L   +AA+E 
Sbjct: 32  ATGAVNAPIYASSTFA----------QDG-VGGLRGGYEYARTGNPTRTALEAALAAVED 80

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
                  +S   GM+A    L  +   G HVV     YGGT  L+   F    N+  T V
Sbjct: 81  AAFGRAFSS---GMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW-NVEYTPV 136

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
            ++D + V +AI +  T++++ E+ +NP L++A+I  +++L  D    V+VDNTF SP +
Sbjct: 137 ALADLDAVRAAI-RPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL 195

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P  LGADVV+HS +K+I G +D++ GA+      ++      Q      G    P  A
Sbjct: 196 QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG---AGAVPGPFDA 252

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           +     +  L LRM+ H   A   A  + +      VLYPGL  HP H +         G
Sbjct: 253 YLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---G 309

Query: 351 FGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 409
           FGG++ + M      A +L      +     +A SLG  E+L+    + T +     +  
Sbjct: 310 FGGMVSVRMRAGRTAAEQLCAKTNIFI----LAESLGSVESLIEHPSAMTHASTAGSQ-- 363

Query: 410 LAGISAGLVRMSVG 423
              +   LVR+SVG
Sbjct: 364 -LEVPDDLVRLSVG 376

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 Length = 331

 Score =  278 bits (715), Expect = 3e-91
 Identities = 106/325 (32%), Positives = 176/325 (54%), Gaps = 20/325 (6%)

Query: 104 LSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP 163
           L  ++A LE  EA   TAS   GM AI++ +     +G H+++   LYG THAL  H   
Sbjct: 3   LEGKIAKLEHAEACAATAS---GMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLR 59

Query: 164 RACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH-DKGVTV 222
           +   +   F+D++    +   + +  T+++YFE+ +NPTL V +I +  + A   K + V
Sbjct: 60  KF-GVEVDFIDMAVPGNIEKHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILV 117

Query: 223 VVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-MDLHQGAL 280
           +VDNTF SP++ +P  LG D+VVHS +K+I+G  D++AG VC  A+++  +     +   
Sbjct: 118 IVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI- 176

Query: 281 MLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHH 338
              G  ++P  A+ ++     L +R+K     A   A  + +     KV YPGL DHP H
Sbjct: 177 --TGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGH 234

Query: 339 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS 398
           E+ K        FG ++  D++  EKA ++++     +    +AVSLG  E+L+    S 
Sbjct: 235 EIAKKQMK---MFGSMIAFDVDGLEKAKKVLDNCHVVS----LAVSLGGPESLIQHPASM 287

Query: 399 TSSELNAEEKALAGISAGLVRMSVG 423
           T + +  EE+  AG++  L+R+SVG
Sbjct: 288 THAGVPKEEREAAGLTDNLIRLSVG 312

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* Length = 415

 Score =  278 bits (714), Expect = 5e-90
 Identities = 79/381 (20%), Positives = 158/381 (41%), Gaps = 25/381 (6%)

Query: 49  RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQM 108
           R +    G VN  I+ +++      E  +         +     Y R    T  +L + M
Sbjct: 35  RSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGE---LFYGRRGTLTHFSLQQAM 91

Query: 109 AALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI 168
             LEG            G +A+++ ++     G HV+   T Y  +    +    +   +
Sbjct: 92  CELEGGAGCVLFPC---GAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKL-GV 147

Query: 169 TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDN 226
           TT++ D      +   + Q  TK+++ ES  + T+ V ++P +            +++DN
Sbjct: 148 TTSWFDPLIGADIVKHL-QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDN 206

Query: 227 TF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP 285
           T+ + ++      G DV + + +K++ G +D + G     A     + +       L+G 
Sbjct: 207 TWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMGQ 262

Query: 286 TMNPKVAFELSER-IPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLK 342
            ++   A+ ++ R +  LG+R+++H   +L  A  + +     +V +P L     HE  K
Sbjct: 263 MVDADTAY-ITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWK 321

Query: 343 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSE 402
                  G  GL    ++ +     L NYL N++ F  MA S G YE+L+  +     + 
Sbjct: 322 RDFT---GSSGLFSFVLKKKLNNEELANYLDNFSLFS-MAYSWGGYESLILANQPEHIAA 377

Query: 403 LNAEEKALAGISAGLVRMSVG 423
           +  + +     S  L+R+ +G
Sbjct: 378 IRPQGE--IDFSGTLIRLHIG 396

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Length = 403

 Score =  277 bits (710), Expect = 1e-89
 Identities = 104/374 (27%), Positives = 179/374 (47%), Gaps = 33/374 (8%)

Query: 55  HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
              V   I  S TF    P                 F YSR  NPT   L + +AAL+G 
Sbjct: 35  SRAVVPPISLSTTFKQGAPGQHSG------------FEYSRSGNPTRNCLEKAVAALDGA 82

Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174
           +     AS   G++A  ++   L  +G  ++    +YGGT+            +  +FVD
Sbjct: 83  KYCLAFAS---GLAATVTIT-HLLKAGDQIICMDDVYGGTNRYFRQVASEF-GLKISFVD 137

Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTF-SPLV 232
            S  +++ +AI    TK+++ E+ +NPT  V +I   + + H  G + +VVDNTF SP  
Sbjct: 138 CSKIKLLEAAI-TPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF 196

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P  LGAD+ ++S +K+++G +D++ G V      +++ +   Q +   LG   +P   
Sbjct: 197 QRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS---LGAVPSPIDC 253

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG 350
           +  +  +  L +RM++H    +  A+ ++      KV+YPGL  HP HEL+K       G
Sbjct: 254 YLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---G 310

Query: 351 FGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 409
             G++   ++ T + A   +  L+ +     +A SLG +E+L       T + +   ++ 
Sbjct: 311 CTGMVTFYIKGTLQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRD 366

Query: 410 LAGISAGLVRMSVG 423
           + GIS  L+R+SVG
Sbjct: 367 VLGISDTLIRLSVG 380

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 393

 Score =  267 bits (685), Expect = 6e-86
 Identities = 105/380 (27%), Positives = 179/380 (47%), Gaps = 37/380 (9%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
            HG V   I  S TF            +         + YSR  NP   NL R +AALE 
Sbjct: 21  VHGSVIEPISLSTTFK----------QSS-PANPIGTYEYSRSQNPNRENLERAVAALEN 69

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            +     +S   G +  +++L Q    G H V+   +YGGTH   T        + T+F 
Sbjct: 70  AQYGLAFSS---GSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAH-GVETSFT 124

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG----VTVVVDNTF- 228
           +      +   I +  TK+++ E+ +NPTL V +I +++ L         V +VVDNTF 
Sbjct: 125 N-DLLNDLPQLI-KENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFL 182

Query: 229 SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMN 288
           SP + +P   GAD+VVHS +K+I+G +D++ G +      +   +   Q A   +G   +
Sbjct: 183 SPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA---IGAIPS 239

Query: 289 PKVAFELSER-IPHLGLRMKEHCHRALIFARRMK---KLGLKVLYPGLEDHPHHELLKSM 344
           P  A+ L+ R +  L LR+++    A   A  +    +  + V YPGL+ HP+++++   
Sbjct: 240 PFDAW-LTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQ 298

Query: 345 ANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL 403
             ++   GG++   ++   E A++  +  + +     +A SLG  E+L+      T   +
Sbjct: 299 H-RDALGGGMISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGI 353

Query: 404 NAEEKALAGISAGLVRMSVG 423
             E +  +G+   LVR+SVG
Sbjct: 354 PKEAREASGVFDDLVRISVG 373

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} Length = 430

 Score =  247 bits (634), Expect = 5e-78
 Identities = 102/358 (28%), Positives = 164/358 (45%), Gaps = 42/358 (11%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
            +YSR  NPTV +L +++  L G        S   GM+AIS+ ++ L  +G  VV    L
Sbjct: 74  HVYSRSSNPTVEDLEQRLKNLTGALGVLALGS---GMAAISTAILTLARAGDSVVTTDRL 130

Query: 151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
           +G T +L     P    I   FVD+ D   V  A     TK+L+ E+ISNP L VA++  
Sbjct: 131 FGHTLSLFQKTLPSF-GIEVRFVDVMDSLAVEHAC-DETTKLLFLETISNPQLQVADLEA 188

Query: 211 LSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAV------- 262
           LS++ H KG+ +VVD T   P +L   RLG D+ V S +KFISGG   + G +       
Sbjct: 189 LSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFE 248

Query: 263 -------------CGPANLVNSMMDLHQGALML--LGPTMNPKVAFELSERIPHLGLRMK 307
                         GP   +           +   LGP+++P  A+  S  +  + LR++
Sbjct: 249 WKSLPSLAPYYAKAGPMAFL-----YKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIE 303

Query: 308 EHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA 365
             C  A   A  +  +     V +P L D P + + K         G +L  ++E++E +
Sbjct: 304 RSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFR---YAGSILTFELESKEAS 360

Query: 366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG 423
            R M+ L+   +      ++   ++L+        +  + EE+    IS  ++R+SVG
Sbjct: 361 YRFMDALKLIRRA----TNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG 414

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} Length = 412

 Score =  238 bits (611), Expect = 9e-75
 Identities = 103/366 (28%), Positives = 164/366 (44%), Gaps = 52/366 (14%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
           ++Y+R  +PT   L  ++ ALEG   A   AS   G +A  + L+ L   G  VVAA+ L
Sbjct: 48  YVYARQKDPTAKALEERLKALEGALEAVVLAS---GQAATFAALLALLRPGDEVVAAKGL 104

Query: 151 YGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE 210
           +G T  L          +T  +VD  + E V  A+   +T+ ++ E+++NP L V ++  
Sbjct: 105 FGQTIGLFGQVLSLM-GVTVRYVD-PEPEAVREAL-SAKTRAVFVETVANPALLVPDLEA 161

Query: 211 LSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAV------ 262
           L+ LA + GV +VVDNTF  +  +  P   GA VVV S++K+ SG   ++ GAV      
Sbjct: 162 LATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETE 221

Query: 263 ---------------------CGPANLVNSMMDLHQGALML--LGPTMNPKVAFELSERI 299
                                                 L L   G  ++P  A+ L + +
Sbjct: 222 LWRNYPQFLQPDLKGQIPWEALRARCFP-----ERVRTLGLSLCGMALSPFNAYLLFQGL 276

Query: 300 PHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL 357
             + LR+      A   A R++       + YPGL + P H   +         G +L L
Sbjct: 277 ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLAS---GGPILTL 333

Query: 358 DMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGL 417
           D+   E+A+R +  ++        A +LG   TL+    ++T S L  E +  AG++ GL
Sbjct: 334 DLGDLERASRFLGAIRL-----LKAANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGL 388

Query: 418 VRMSVG 423
           VR+SVG
Sbjct: 389 VRVSVG 394

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 Length = 421

 Score =  233 bits (598), Expect = 1e-72
 Identities = 108/372 (29%), Positives = 165/372 (44%), Gaps = 55/372 (14%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
            IYSR  NPTV  L +++AALEG +AA  TAS   G +A    L  L  +G ++V+   L
Sbjct: 50  NIYSRIMNPTVDVLEKRLAALEGGKAALATAS---GHAAQFLALTTLAQAGDNIVSTPNL 106

Query: 151 YGGTHALLTHFFPRACNITTTFVDISDH-EMVNSAIVQGRTKVLYFESISNPTLAVANIP 209
           YGGT         R   I   F    +  E   +     +T+  + ESI NP L + ++ 
Sbjct: 107 YGGTFNQFKVTLKRL-GIEVRFTSREERPEEFLALT-DEKTRAWWVESIGNPALNIPDLE 164

Query: 210 ELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAV----- 262
            L++ A +KGV ++VDNTF     +L P   GA +V HS++K++ G   +IAGA+     
Sbjct: 165 ALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGN 224

Query: 263 --------------------------CGPANLVNSMMDLHQGALML--LGPTMNPKVAFE 294
                                      G    +     +      L   G  + P  A+ 
Sbjct: 225 FPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFI-----VKARVDGLRDQGQALGPFEAWV 279

Query: 295 LSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG 352
           +   +  L LR + H    L  A  + +      V YPGL  HPHH+  +         G
Sbjct: 280 VLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKG--KPG 337

Query: 353 GLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALA 411
            +L   ++   E A R ++ L+  +       ++G   TL     S+T S+L+ EE+A A
Sbjct: 338 AVLTFGLKGGYEAAKRFISRLKLISHL----ANVGDTRTLAIHPASTTHSQLSPEEQAQA 393

Query: 412 GISAGLVRMSVG 423
           G+S  +VR+SVG
Sbjct: 394 GVSPEMVRLSVG 405

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} Length = 431

 Score =  168 bits (427), Expect = 1e-47
 Identities = 49/290 (16%), Positives = 91/290 (31%), Gaps = 39/290 (13%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTL 150
           + Y      T+  +   +   E         S   G  AIS+ L  +   G  ++    +
Sbjct: 60  YGYDDIGRDTLEKVYADVFGAEAGLVRPQIIS---GTHAISTALFGILRPGDELLY---I 113

Query: 151 YGGTHALLTHFFPRACN--------------ITTTFVDISDHEMVNSAIVQGRTKVLYFE 196
            G  +  L                       +  T   + D E V +AI    TK++  +
Sbjct: 114 TGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGIQ 172

Query: 197 S----ISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPARLGADVVVHSIS 248
                 + P+  ++ I E+     +    V V VDN +        P  +GAD++  S+ 
Sbjct: 173 RSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLI 232

Query: 249 KFISGGADIIAGAVCGPANLVNSMMD--LHQGALMLLGPTMNP-KVAFELSERIPHLGLR 305
           K   GG     G + G    V +        G     G ++   +  ++     PH    
Sbjct: 233 KNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPH---V 289

Query: 306 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL 355
             +    A+  A  ++KLG     P         +     +       ++
Sbjct: 290 AGQALKGAIFTAAFLEKLG-MNTSPAWNAPRTDLIQSVQFD---DKDRMI 335

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} Length = 427

 Score =  165 bits (419), Expect = 1e-46
 Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 44/280 (15%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA--- 147
           + Y+     ++  +   +   E         +   G  AI + L         +++    
Sbjct: 69  YGYNDIGRDSLDRVYANIFNTESAFVRPHFVN---GTHAIGAALFGNLRPNDTMMSICGM 125

Query: 148 -----RTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQG-RTKVLYFES 197
                  + G   +           +    VD+     D   V   + +    K+++ + 
Sbjct: 126 PYDTLHDIIGMDDSKKVGSLREY-GVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184

Query: 198 ISN----PTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVL--SPARLGADVVVHSISK 249
            +      +L +A I E+ +   +  + V V VDN +   V    P  +GAD++  S+ K
Sbjct: 185 STGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIK 244

Query: 250 FISGGADIIAGAVCGPANLVN--SMMDLHQGALMLLGPTMNP----KVAFELSERIPHLG 303
            I GG     G + G    V   +      G     G T            ++  +    
Sbjct: 245 NIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVTIEA 304

Query: 304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS 343
           ++    C R       M+  G  V        P +   ++
Sbjct: 305 VKGAVFCARI------MELAGFDV-------LPKYNDKRT 331

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* Length = 427

 Score =  160 bits (407), Expect = 7e-45
 Identities = 41/268 (15%), Positives = 83/268 (30%), Gaps = 42/268 (15%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA--- 147
           + Y      ++  +  ++   E         +   G  A+ + L      G  +++    
Sbjct: 68  YGYGDIGRDSLDAVYARVFNTESALVRPHFVN---GTHALGAALFGNLRPGNTMLSVCGE 124

Query: 148 -----RTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES 197
                  + G T             I    VD+      + E +   + +    +     
Sbjct: 125 PYDTLHDVIGITENSNMGSLKE-FGINYKQVDLKEDGKPNLEEIEKVL-KEDESITLVHI 182

Query: 198 ISN------PTLAVANIPELSRLAHD--KGVTVVVDNTF-SPLVLS-PARLGADVVVHSI 247
             +        L + +I  +     +  K +   VDN +   +    P  +GAD++  S+
Sbjct: 183 QRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSL 242

Query: 248 SKFISGGADIIAGAVCGPANLVNSMMD--LHQGALMLLGPTMNPKVAFELSERIPHLGLR 305
            K I GG     G + G  + +          G     G T           R  + GL 
Sbjct: 243 IKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTF-------GVVRSMYQGLF 295

Query: 306 MKEHCHR-----ALIFARRMKKLGLKVL 328
           +  H        A++ +R M+  G +V+
Sbjct: 296 LAPHISMEALKGAILCSRIMELAGFEVM 323

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* Length = 374

 Score =  157 bits (399), Expect = 3e-44
 Identities = 52/358 (14%), Positives = 115/358 (32%), Gaps = 59/358 (16%)

Query: 87  DRDFFIYSRHFNPTVLN-----LSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSG 141
           ++D  + + +   +           +    +  +            SAI + ++ L    
Sbjct: 44  EKDKALLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNR---TSSAILATILAL-KPK 99

Query: 142 GHVVAARTLYGGTHALLTHFFPRACN-ITTTFVDISDHEMVNSAIVQGRTKVLYFESISN 200
             +     L G           R+C  +   + +      + + I    T V+   S  +
Sbjct: 100 KVIHYLPELPGHP------SIERSCKIVNAKYFESDKVGEILNKI-DKDTLVIITGSTMD 152

Query: 201 -PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPA-----RLGADVVVHSISKFISG 253
              + + N  ++   A +K   V VD+   + + L        +LGAD+VV S  K + G
Sbjct: 153 LKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG 212

Query: 254 GADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL-RMKEHCHR 312
                 G + G   LV+ +  +        G    P +   +   + +  L R+++   R
Sbjct: 213 PR---GGLLAGKKELVDKIY-IEG---TKFGLEAQPPLLAGIYRALKNFNLERIRKAFER 265

Query: 313 ALIFARRM-------KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEK 364
           A  F            K     +    E  P   ++K +            ++++   E 
Sbjct: 266 AKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVY-------KDDTINIKKLIEI 318

Query: 365 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV 422
              L+        +G + +      T+    G+S S  ++   +    I    +  ++
Sbjct: 319 GFNLLK------NYGIITI------TVAGMPGASKSLRIDLTSRDAERIDDNYIIKAI 364

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* Length = 409

 Score =  146 bits (369), Expect = 1e-39
 Identities = 49/281 (17%), Positives = 91/281 (32%), Gaps = 43/281 (15%)

Query: 91  FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA--- 147
           + Y      T+  +   +   E         S   G  AIS+VL  +      ++     
Sbjct: 54  YGYDDEGRDTLERVYATVFKTEAALVRPQIIS---GTHAISTVLFGILRPDDELLYITGQ 110

Query: 148 -----RTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFE- 196
                  + G           +  +I  + V +      D   +   +   +TK++  + 
Sbjct: 111 PYDTLEEIVGIRKQGQGSL--KDFHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGIQR 167

Query: 197 ---SISNPTLAVANIPELSRLAHDKG--VTVVVDNTF-SPLVLS-PARLGADVVVHSISK 249
                  P+  +  I E+     +    V V VDN +   +    P  +GAD++  S+ K
Sbjct: 168 SRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIK 227

Query: 250 FISGGADIIAGAVCGPANLVNSMMD-LHQ-GALMLLGPTMNPKVAFELSERIPHLGLRMK 307
              GG     G + G   LV+     L   G     G ++             + G  + 
Sbjct: 228 NPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL-------LEMYQGFFLA 280

Query: 308 EHCHR-----ALIFARRMKKLGLKVLYPGLEDHPHHELLKS 343
            H        A   A  + + G++   P   D P  +L++S
Sbjct: 281 PHVTAQAIKGARFTAAMLAEFGVEA-DPVW-DAPRTDLIQS 319

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 9e-08
 Identities = 68/442 (15%), Positives = 130/442 (29%), Gaps = 147/442 (33%)

Query: 44  ALASARHEFG--EHG--GVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFN- 98
           AL   R        G  G   +  A     V     ++     ++     F++  ++ N 
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALD---VCLSYKVQCKMDFKI-----FWLNLKNCNS 194

Query: 99  PTVL-----NLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG 153
           P  +      L  Q+      +  + + SD    S I   +  + +    ++ ++     
Sbjct: 195 PETVLEMLQKLLYQI------DPNWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPY--- 243

Query: 154 THALL--------THF--FPRACNI--TTTFVDISDHEMVNSAIVQGRTKVLYFESISNP 201
            + LL          +  F  +C I  TT F  ++D       +    T  +  +  S  
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD------FLSAATTTHISLDHHSMT 297

Query: 202 -----TLA----VANIP--ELSRLAHDKGVTVVVDNTFSPLVLS---------PAR---- 237
                  +      +    +L R             T +P  LS          A     
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVL----------TTNPRRLSIIAESIRDGLATWDNW 347

Query: 238 --LGADVVVHSISKFISG------------------GADIIAGAVC-----GPANLVNSM 272
             +  D +   I   ++                    A I    +         + V  +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 273 MD-LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHC------HRALIFARRM-KKLG 324
           ++ LH+ +L+       PK   E +  IP + L +K         HR+++    + K   
Sbjct: 408 VNKLHKYSLVEK----QPK---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 325 LKVLYPGLED-----H-PHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF 378
              L P   D     H  HH     + N E+             E+   L   +  +  F
Sbjct: 461 SDDLIPPYLDQYFYSHIGHH-----LKNIEHP------------ERMT-LFRMV--FLDF 500

Query: 379 GFMAVSLGYYETLMSCSGSSTS 400
            F+   + +  T  + SGS  +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILN 522

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 173 VDISDHEMVNSAIVQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDN--- 226
           VD    E + +   +GR   +     +NPT   L    +  L+ +A    + +++DN   
Sbjct: 191 VDFEALENLPALK-EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYG 249

Query: 227 --TFSPLVLSPARLGADVVVH--SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 282
               + +         +  +   S+SK    G     G +   A ++ ++  ++     L
Sbjct: 250 MPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRT--GIIVADAKVIEAVSAMNAVV-NL 306

Query: 283 LGPTMNPKVAFELSER 298
                   +A  L   
Sbjct: 307 APTRFGAAIATPLVAN 322

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 27/99 (27%)

Query: 189 RTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPL--------VLSPAR 237
              ++   S +NPT    ++ EL      A      ++ D  +S +        +L    
Sbjct: 154 EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACM 213

Query: 238 LGAD------VVVHSISK----------FISGGADIIAG 260
           L  +      +V+HS+SK          FI+G + ++  
Sbjct: 214 LAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEK 252

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 32/167 (19%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 179 EMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPA 236
           + +     +G   +            + ++ +++++  +  V ++V+  ++   + +S  
Sbjct: 137 QTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLK 196

Query: 237 RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH----QGALMLLGPTMNPKVA 292
            +GAD +V S  K  S  A    G +         ++          + LLG T      
Sbjct: 197 EIGADFIVGSGHK--SMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATI 254

Query: 293 FELSERIPHLGLRMKEHCH---RALIFARRMKKLGLKVLYPGLEDHP 336
             L    PH+  R+K       +A  FA  M+KLG+K L     +H 
Sbjct: 255 ITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHD 301

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 68/212 (32%)

Query: 93  YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGG---------- 142
             R ++   ++   ++  + G+         +  + +    ++   S G           
Sbjct: 79  LKRRYDGLTVDADNEILPVLGS---------REALFSFVQTVLNPVSDGIKPAIVSPNPF 129

Query: 143 ---HVVAARTLYGGT-HALLT---HFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYF 195
              +  A   L GG  H        F P             D   ++  + + RTK+++ 
Sbjct: 130 YQIYEGATL-LGGGEIHFANCPAPSFNP-------------DWRSISEEVWK-RTKLVFV 174

Query: 196 ESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFS---------PLVLS-PARLGAD- 241
            S +NP+ +V ++     +       G  +  D  +S            L   A+LG   
Sbjct: 175 CSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSR 234

Query: 242 ---VVVHSISK----------FISGGADIIAG 260
              ++  S+SK          F++G A+++  
Sbjct: 235 QKLLMFTSLSKRSNVPGLRSGFVAGDAELLKN 266

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 13/120 (10%)

Query: 186 VQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDN----TFSPLVLSPAR- 237
           +   T ++     +NPT   +    + +L RLA+   + +V+DN     F  ++ S AR 
Sbjct: 177 IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP 236

Query: 238 LGADVVVH--SISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL 295
           L    ++   S+SK    G+    G +      + ++ +++     L    M P +  E+
Sbjct: 237 LWNPNIILCMSLSKLGLPGSRC--GIIIANDKTITAIANMNGII-SLAPGGMGPAMMCEM 293

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 35/213 (16%)

Query: 128 SAISSVLMQLCSSGGHVVAART----LYGGTHAL-LTHFFPRACNITTTFVDISDHEM-V 181
           S I SV+       G ++ AR     +    HAL ++        I T    +++H   V
Sbjct: 83  SGILSVIQSFSQKKGDILMARNVHKSVL---HALDISQQEGHF--IETHQSPLTNHYNKV 137

Query: 182 NSAIVQGRTKVLYFESISNPTL--AVANIPELSRLAHDKGVTVVVDN------TFSPLVL 233
           N + +      L    ++ P       N+ E+ +  H   + V++D              
Sbjct: 138 NLSRLNNDGHKLVV--LTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPD 195

Query: 234 SPARLGADVVVHSISK---FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK 290
           S     AD VV S  K    ++ G+ +           +   +   Q +           
Sbjct: 196 STLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSP--------- 246

Query: 291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKL 323
            ++ +   +     +  +     L FA+R + +
Sbjct: 247 -SYLIMASL-ESAAQFYKTYDSTLFFAKRAQLI 277

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	100.0
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	100.0
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	100.0
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	100.0
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	100.0
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	100.0
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	100.0
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	100.0
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	100.0
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	100.0
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	100.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	100.0
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	100.0
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	100.0
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	100.0
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	100.0
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	100.0
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	100.0
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	100.0
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	100.0
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.98
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.98
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.97
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.97
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.97
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.97
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.97
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.97
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.97
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.97
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.97
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.97
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.97
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.97
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.97
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.97
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.97
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.97
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.97
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.97
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.97
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.97
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.97
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.97
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.97
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.97
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.97
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.97
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.97
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.97
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.97
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.97
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.97
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.97
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.97
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.97
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.96
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.96
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.96
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.96
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.96
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.96
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.96
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.96
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.96
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.96
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.96
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.96
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.96
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.96
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.96
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.96
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.96
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.96
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.96
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.96
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.96
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.96
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.96
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.96
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.96
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.96
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.96
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.96
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.96
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.96
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.96
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.96
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.96
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.96
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.96
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.96
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.96
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.96
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.96
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.96
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.96
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.95
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.95
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.95
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.95
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.95
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.95
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.95
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.95
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.95
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.95
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.95
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.95
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.95
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.95
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.95
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.95
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.95
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.95
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.95
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.95
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.95
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.95
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.95
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.94
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.94
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.94
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.94
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.94
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.94
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.94
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.94
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.94
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.94
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.94
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.94
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.94
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.94
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.94
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.94
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.94
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.93
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.93
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.93
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.93
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.93
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.93
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.93
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.93
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.93
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.93
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.93
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.93
1svv_A	359	Threonine aldolase; structural genomics, structura	99.93
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.93
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.93
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.93
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.93
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.92
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.92
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.92
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.92
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.92
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.92
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.92
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.86
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.92
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.92
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.92
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.92
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.92
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.92
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.92
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.92
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.91
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.91
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.91
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.91
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.91
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.91
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.91
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.91
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.91
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.91
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.91
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.9
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.9
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.9
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.9
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.9
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.9
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.9
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.89
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.89
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.89
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.89
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.89
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.89
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.89
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.88
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.88
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.88
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.88
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.88
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.88
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.88
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.88
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.88
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.87
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.87
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.87
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.87
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.87
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.87
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.87
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.86
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.86
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.86
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.86
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.86
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.86
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.86
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.85
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.85
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.83
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.71
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.79
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.73
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.68
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.66
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.65
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.65
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.62
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.57
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.51

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.3e-55  Score=443.68  Aligned_cols=382  Identities=29%  Similarity=0.446  Sum_probs=338.4

Q ss_pred             CCCChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079           37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA  116 (450)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~  116 (450)
                      ..+++.|+++|+....+.+|++.|||+.++||.+++.+.+.+.+...    .+.|.|+|+.+|..+++++++|+++|.+.
T Consensus        23 ~~~~~~t~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~l~~~la~~~g~~~   98 (414)
T 3ndn_A           23 DGVSQATVGVRGGMLRSGFEETAEAMYLTSGYVYGSAAVAEKSFAGE----LDHYVYSRYGNPTVSVFEERLRLIEGAPA   98 (414)
T ss_dssp             TTCCHHHHHHHTTCCCCTTCBSSCCBCCCSBBCCSSHHHHHHHHTTS----SCCCCBTTTCCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCCccceeeecCCCCCCCCCcCCCcccCCceecCChHHHHHHHhCC----cCCcCcCCCCChHHHHHHHHHHHHHCCCc
Confidence            34578888888544446789999999999999999988877776443    56799999999999999999999999999


Q ss_pred             EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      +++++|   |++|+.+++++++++||+|+++.+.|+++...+...+.+ .|+++.+++.+|+++|++++ +++|++|+++
T Consensus        99 ~~~~~s---G~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~ai-~~~t~~v~le  173 (414)
T 3ndn_A           99 AFATAS---GMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPR-WGVQTVFVDGDDLSQWERAL-SVPTQAVFFE  173 (414)
T ss_dssp             EEEESS---HHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHT-SSCCSEEEEE
T ss_pred             EEEECC---HHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHH-cCcEEEEeCCCCHHHHHHhc-CCCCeEEEEE
Confidence            999999   999999999999999999999999999998877544443 79999999999999999999 8899999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHH
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMD  274 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~  274 (450)
                      +|+||+|.+.|+++|+++|+++|+++|+|++| .+....+...|+|+++.|+||+++++|..++|+++++++.+. .+..
T Consensus       174 ~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~  253 (414)
T 3ndn_A          174 TPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK  253 (414)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHH
T ss_pred             CCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHH
Confidence            99999999999999999999999999999999 344456777899999999999999988444599999887775 5554


Q ss_pred             HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      ...    ..|..+++..++++++.++++..+++++.++++++.++|++++.  .+.+|+++++|+|++++++++   |+|
T Consensus       254 ~~~----~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~---g~G  326 (414)
T 3ndn_A          254 LMR----HTGPAMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMS---GGG  326 (414)
T ss_dssp             HHH----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCC
T ss_pred             HHH----HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCC---CCc
Confidence            444    45677788888888888999999999999999999999999876  788999999999999999886   899


Q ss_pred             cEEEEEeCC-----HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013079          353 GLLCLDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT  427 (450)
Q Consensus       353 ~~~~~~l~~-----~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~  427 (450)
                      ++++|++++     .+.+.+|++.++..   + +++|+|+.+|++++|++++|..++++++.++|+.+++||||+| .|+
T Consensus       327 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG-~e~  401 (414)
T 3ndn_A          327 TVVTFALDCPEDVAKQRAFEVLDKMRLI---D-ISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG-LED  401 (414)
T ss_dssp             SEEEEEECSCGGGHHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC-SSC
T ss_pred             eEEEEEEcCCccccHHHHHHHHHhCccc---e-EcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC-cCC
Confidence            999999985     67789999999863   3 7999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHH
Q 013079          428 LDQRWSQFEKAL  439 (450)
Q Consensus       428 ~~~~i~~l~~al  439 (450)
                      +++++++|.++|
T Consensus       402 ~~dli~dl~~al  413 (414)
T 3ndn_A          402 TDDLIADIDRAL  413 (414)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999999997

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=100.00  E-value=9.4e-56  Score=447.83  Aligned_cols=380  Identities=29%  Similarity=0.457  Sum_probs=289.5

Q ss_pred             ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.|+++|+ +.....+|+++|||++++||.+++.+.+.+.+...    ...|.|+|+.+|+.++++++||+++|.+.++
T Consensus        26 ~~~t~~~h~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v  101 (430)
T 3ri6_A           26 GFTTRALHVPKAKRDVHGALRTPVYDNAAFEFENSDEIAQVSLGR----ALGHVYSRSSNPTVEDLEQRLKNLTGALGVL  101 (430)
T ss_dssp             CHHHHHHCCC------------------------------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CcchhheeCCCCCCCCCCCcCCCcccccccccCCHHHHHHHhhcc----cCCccccCCCCHHHHHHHHHHHHHHCCCcEE
Confidence            377888874 44555689999999999999999987776665433    4579999999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |++|+.+++.+++++||+|+++++.|+++...+...... .|+++++++.+|+++|++++ +++|++|++++|
T Consensus       102 ~~~s---G~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~~~~v~~~d~~~l~~ai-~~~t~~v~~e~p  176 (430)
T 3ri6_A          102 ALGS---GMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPS-FGIEVRFVDVMDSLAVEHAC-DETTKLLFLETI  176 (430)
T ss_dssp             EESC---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHH-TTCEEEEECTTCHHHHHHHC-CTTEEEEEEESS
T ss_pred             EECC---HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhh-CCCCeEEEEECC
Confidence            9999   999999999999999999999999999998866434443 79999999999999999999 889999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEE--cCHHH-------
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVC--GPANL-------  268 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~--~~~~~-------  268 (450)
                      +||+|.+.|+++|+++|+++|+++|+|++| .+..+++...|+|++++|+||+++++|..+||+++  .+..+       
T Consensus       177 ~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~  256 (430)
T 3ri6_A          177 SNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLA  256 (430)
T ss_dssp             CTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTH
T ss_pred             CCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchh
Confidence            999999999999999999999999999999 55557888889999999999999999888889888  33222       


Q ss_pred             -----------HHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCC
Q 013079          269 -----------VNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDH  335 (450)
Q Consensus       269 -----------~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~  335 (450)
                                 +..++.   ......|..+++..+++++++++++..|++++.++++.+.++|++++.  +|.+|+++++
T Consensus       257 ~l~~~~g~~~~i~~~~~---~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~  333 (430)
T 3ri6_A          257 PYYAKAGPMAFLYKARK---EVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDS  333 (430)
T ss_dssp             HHHHHHGGGHHHHHHHH---THHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTS
T ss_pred             hhhhhhchhhHHHHHHH---HHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCC
Confidence                       222221   112256777888999888888999999999999999999999999875  7899999999


Q ss_pred             chhHHHHHHhccCCCcCc-EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC
Q 013079          336 PHHELLKSMANKEYGFGG-LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS  414 (450)
Q Consensus       336 p~~~l~~~~~~~~~g~g~-~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~  414 (450)
                      |+|+++++++    |+|+ +++|++++.+.+.+|++.++..   + +++|+|+.+|++++|++++|..++++++.+.|+.
T Consensus       334 p~~~~~~~~~----g~Gg~~lsf~l~~~~~~~~~~~~l~~~---~-~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~  405 (430)
T 3ri6_A          334 PFYAIAKRQF----RYAGSILTFELESKEASYRFMDALKLI---R-RATNIHDNKSLILSPYHVIYALNSHEERLKLEIS  405 (430)
T ss_dssp             TTHHHHHHHC----SSCCSEEEEECSSHHHHHHHHHHCSSS---E-ECSCCSCSSCEEECTGGGC---------CGGGSC
T ss_pred             ccHHHHHHhC----CCCceEEEEEECCHHHHHHHHHhCCcc---e-ecCCCCCCCceeeCCcccccccCCHHHHHhcCCC
Confidence            9999999987    6888 9999999878899999999874   3 7999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          415 AGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       415 ~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      +++||||+| .|++++++++|+++|+
T Consensus       406 ~~liRlsvG-~E~~~dl~~dl~~al~  430 (430)
T 3ri6_A          406 PAMMRLSVG-IEEIEDLKEDILQALC  430 (430)
T ss_dssp             TTEEEEECC-SSCHHHHHHHHHHHHC
T ss_pred             CCeEEEEec-cCCHHHHHHHHHHhhC
Confidence            999999999 9999999999999973

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=100.00  E-value=8.7e-54  Score=434.76  Aligned_cols=386  Identities=29%  Similarity=0.493  Sum_probs=337.4

Q ss_pred             CCCCCh-hHHHhhc-CCCC--CCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHH
Q 013079           36 AAWEDP-AAALASA-RHEF--GEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL  111 (450)
Q Consensus        36 ~~~~~~-~~~~~~~-~~~~--~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l  111 (450)
                      .+++.| .|+++|+ +...  ..+|++.+||+.++||.+++.+++.+.+...    .+.|.|+|++++..++++++||++
T Consensus        51 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~----~~~~~y~r~~~~~~~~l~~~lA~l  126 (445)
T 1qgn_A           51 ASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKR----RASFEYGRYGNPTTVVLEEKISAL  126 (445)
T ss_dssp             CTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTS----SCCCCBGGGCCHHHHHHHHHHHHH
T ss_pred             cccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccc----cCCccccCCCChHHHHHHHHHHHH
Confidence            455667 7888884 4333  4689999999999999999988877776543    457999999999999999999999


Q ss_pred             hCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCc-
Q 013079          112 EGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRT-  190 (450)
Q Consensus       112 ~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t-  190 (450)
                      +|++..+++++   |++|+++++++++++||+|+++.+.|+++...+...+.+ .|+++++++.+|+++|++++ +++| 
T Consensus       127 ~g~~~~v~~~s---G~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~ai-~~~tv  201 (445)
T 1qgn_A          127 EGAESTLLMAS---GMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELAL-NQKKV  201 (445)
T ss_dssp             HTCSEEEEESC---HHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHH-HHSCE
T ss_pred             hCCCcEEEeCC---HHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCCC
Confidence            99988888899   999999999999999999999999999988876544554 79999999999999999999 7788 


Q ss_pred             eEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHH
Q 013079          191 KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLV  269 (450)
Q Consensus       191 ~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~  269 (450)
                      ++|++++|+||+|.+.|+++|+++|+++|+++|+|++| .++...+..+++|++++|+||+++++|+.++|+++++++++
T Consensus       202 ~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~  281 (445)
T 1qgn_A          202 NLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLV  281 (445)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHH
T ss_pred             CEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHH
Confidence            99999999999999999999999999999999999999 45556777789999999999999988764459999999988


Q ss_pred             HHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhcc
Q 013079          270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANK  347 (450)
Q Consensus       270 ~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~  347 (450)
                      +.+...+.    ..|..+++..++.+.++++++..+++++.++++++.++|++++.  ++.+|+++++|+|++++++++ 
T Consensus       282 ~~l~~~~~----~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~-  356 (445)
T 1qgn_A          282 SEIRNLHH----ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT-  356 (445)
T ss_dssp             HHHHHHHH----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS-
T ss_pred             HHHHHHHH----HhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhcc-
Confidence            88866544    45666777777777778899999999998999999999999875  688999999999999999876 


Q ss_pred             CCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079          348 EYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG  426 (450)
Q Consensus       348 ~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~  426 (450)
                        |.|++++|.+++ .+.+..|++.++.   ++ +++|+|++||++.+|+..+|..++++++.++|+++++||||+| .|
T Consensus       357 --g~g~ivsf~l~~~~~~~~~~l~~l~~---~~-i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG-~E  429 (445)
T 1qgn_A          357 --GFGGAVSFEVDGDLLTTAKFVDALKI---PY-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VE  429 (445)
T ss_dssp             --CCCSEEEEEESSCHHHHHHHHHHCSS---SE-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SS
T ss_pred             --CCCcEEEEEECCCHHHHHHHHHhCCC---ce-EeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec-cC
Confidence              789999999985 3558889999875   33 7999999999999999989999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHh
Q 013079          427 TLDQRWSQFEKALSRM  442 (450)
Q Consensus       427 ~~~~~i~~l~~al~~~  442 (450)
                      ++++++++|.++++++
T Consensus       430 did~li~~L~~al~~~  445 (445)
T 1qgn_A          430 DFDDLKADILQALDSI  445 (445)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhhC
Confidence            9999999999999753

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=100.00  E-value=4.6e-54  Score=433.93  Aligned_cols=379  Identities=21%  Similarity=0.361  Sum_probs=325.0

Q ss_pred             ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.|+++|+ +.....+|++++|||.|+||.+++.+.+.+.+....   ...|.|+|+++|+++++|++||+++|++.++
T Consensus        25 ~~~t~~~~~~~~~~~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~---~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i  101 (415)
T 2fq6_A           25 KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRA---NGELFYGRRGTLTHFSLQQAMCELEGGAGCV  101 (415)
T ss_dssp             CHHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTT---TTSCCCTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CcCceeEeCCCCCCCCCCCEeCCeecccceeeCCHHHHHHhhcccc---CCCccccCCCCchHHHHHHHHHHHhCCCeEE
Confidence            477777774 433445799999999999999999988888876541   3469999999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |++|+++++.+++++||+|+++.++|+++...+...+.+ .|+++++++.+|+++|++++ +++|++|++++|
T Consensus       102 ~~ss---Gt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~-~G~~v~~v~~~d~~~le~ai-~~~tklV~~e~~  176 (415)
T 2fq6_A          102 LFPC---GAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESP  176 (415)
T ss_dssp             EESS---HHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGGC-CTTEEEEEEESS
T ss_pred             EeCC---HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEECCCCHHHHHHhh-ccCCcEEEEECC
Confidence            9999   999999999999999999999999999998887655555 79999999999999999999 889999999999


Q ss_pred             CCCcccccCHHHHHHHHHh--cCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH
Q 013079          199 SNPTLAVANIPELSRLAHD--KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL  275 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~--~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~  275 (450)
                      +||+|.++|+++|+++|++  +|+++|+|++| .++...+..+++|++++|+||+++++|++++|++++++++++.+...
T Consensus       177 ~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~  256 (415)
T 2fq6_A          177 GSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN  256 (415)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH
T ss_pred             CCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHH
Confidence            9999999999999999999  99999999999 44556777889999999999999999987779999888888877665


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      +.    ..|..+++..++.+.+.++++..+++++.+++..+.++|++++.  ++.+|+++.+|.+++++++++   +.|+
T Consensus       257 ~~----~~G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---~~g~  329 (415)
T 2fq6_A          257 AY----LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSG  329 (415)
T ss_dssp             HH----HTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCS
T ss_pred             HH----hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCce
Confidence            44    45666677777777777788888999999999999999999875  677999999999999998765   6889


Q ss_pred             EEEEEeCC---HHHHHHHHHHhhccccccccccccccccccccc--cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013079          354 LLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC--SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL  428 (450)
Q Consensus       354 ~~~~~l~~---~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~--~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~  428 (450)
                      +++|.+++   .+.+..|++.++..   + +++|+|++||++.+  |+..++...    ..++|+.+++||||+| .+++
T Consensus       330 i~sf~l~g~~~~~~~~~~l~~l~~~---~-~a~s~G~~~s~~~~~~p~~~s~~~~----~~~~g~~~~~iRlS~G-~e~~  400 (415)
T 2fq6_A          330 LFSFVLKKKLNNEELANYLDNFSLF---S-MAYSWGGYESLILANQPEHIAAIRP----QGEIDFSGTLIRLHIG-LEDV  400 (415)
T ss_dssp             EEEEEESSCCCHHHHHHHHTTCSSC---E-ECSCCCSSSCEEEEECHHHHHTTCT----TCCCCCCSCEEEEECC-SSCH
T ss_pred             EEEEEECCCCCHHHHHHHHHhCCcC---e-EeccCCCCceeEEecCCCccccccc----hhhcCCCCCEEEEEec-CCCH
Confidence            99999986   56789999998863   3 79999999999987  655443210    0246787899999999 9999


Q ss_pred             HHHHHHHHHHHHHh
Q 013079          429 DQRWSQFEKALSRM  442 (450)
Q Consensus       429 ~~~i~~l~~al~~~  442 (450)
                      ++++++|.++|+++
T Consensus       401 ~d~i~~l~~al~~~  414 (415)
T 2fq6_A          401 DDLIADLDAGFARI  414 (415)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999999864

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=100.00  E-value=2.4e-53  Score=427.13  Aligned_cols=372  Identities=35%  Similarity=0.557  Sum_probs=328.9

Q ss_pred             CChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           39 EDPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        39 ~~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      +++.|+++|+ +.....+|++++||+.++||.+++.+.            ...|.|+|+++|..++++++||+++|.+.+
T Consensus        18 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~s~~~~~~~~~------------~~~~~y~r~~~p~~~~l~~~la~l~g~~~~   85 (400)
T 3nmy_A           18 LSLATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGE------------HQGFEYSRTHNPTRFAYERCVAALEGGTRA   85 (400)
T ss_dssp             CCHHHHHHHTTCCCCTTTCBSSCCBCCCSBBBCSBTTB------------SSSCCBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred             CCcchheeeCCCCCCCCCCCcCCCccccceeeccCccc------------cCCcccccCCCHHHHHHHHHHHHHhCCCCE
Confidence            5688888884 445567899999999999999887531            246899999999999999999999999999


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHh-CCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF-FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~-~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      ++++|   |++|+.+ +..++++||+|+++.+.|+++...+... +.+ .|+++.+++.+|++++++++ ++++++|+++
T Consensus        86 ~~~~s---G~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~e  159 (400)
T 3nmy_A           86 FAFAS---GMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRT-AGLDFSFVDLTDPAAFKAAI-RADTKMVWIE  159 (400)
T ss_dssp             EEESS---HHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHH-HCCEEEEECTTSHHHHHHHC-CTTEEEEEEE
T ss_pred             EEecC---HHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhh-cCeEEEEECCCCHHHHHHHh-ccCCCEEEEE
Confidence            99999   9999998 5668899999999999999888776544 343 69999999999999999999 8899999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEE-EEE-cCHHHHHHHH
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG-AVC-GPANLVNSMM  273 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG-~l~-~~~~~~~~l~  273 (450)
                      +|+||+|.+.|+++|+++|+++|+++|+|++| .++...+..+|+|++++|+||+++++|.++|| +++ .++++++.+.
T Consensus       160 ~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~  239 (400)
T 3nmy_A          160 TPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMA  239 (400)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHH
T ss_pred             CCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHH
Confidence            99999999999999999999999999999999 44556777889999999999999999988878 554 5777888887


Q ss_pred             HHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCc
Q 013079          274 DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF  351 (450)
Q Consensus       274 ~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~  351 (450)
                      ....    ..|..+++..++++++.++.+..+++++.++++.+.++|++++.  ++.+|+++++|+|++++++++   |.
T Consensus       240 ~~~~----~~g~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~---g~  312 (400)
T 3nmy_A          240 FLQN----SIGGVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMS---GF  312 (400)
T ss_dssp             HHHH----HHCCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SC
T ss_pred             HHHH----hcCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCC---CC
Confidence            6655    55677788888888888899999999999999999999999876  789999999999999999886   89


Q ss_pred             CcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013079          352 GGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ  430 (450)
Q Consensus       352 g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~  430 (450)
                      |++++|++++ .+.+.+|++.++..   + +++|+|+.+|++++|+++++..++++++.++|+++++||||+| .|++++
T Consensus       313 G~~~~~~l~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvG-le~~~d  387 (400)
T 3nmy_A          313 GGIVSIVLKGGFDAAKRFCEKTELF---T-LAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVG-IEDLGD  387 (400)
T ss_dssp             CSEEEEEETTHHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHH
T ss_pred             CceEEEEeCCcHHHHHHHHHcCCcc---e-EecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeC-cCCHHH
Confidence            9999999985 45678999999863   3 7999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHHHHHHH
Q 013079          431 RWSQFEKALS  440 (450)
Q Consensus       431 ~i~~l~~al~  440 (450)
                      ++++|+++|+
T Consensus       388 li~dl~~al~  397 (400)
T 3nmy_A          388 LRGDLERALV  397 (400)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999999987

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=100.00  E-value=6.9e-52  Score=415.98  Aligned_cols=370  Identities=32%  Similarity=0.465  Sum_probs=324.6

Q ss_pred             CChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           39 EDPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        39 ~~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      +++.|+++|+ +.....+|++.+||+.++||.+++.           +++.+.|.|+|+.++.+++++++||+++|.+.+
T Consensus        16 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~-----------~~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~   84 (392)
T 3qhx_A           16 AGLATRAIHSGYRPDPATGAVNAPIYASSTFAQDGV-----------GGLRGGYEYARTGNPTRTALEAALAAVEDAAFG   84 (392)
T ss_dssp             CCHHHHHHHSSCCCCTTTCBSSCCBCCCSBBCCSST-----------TCCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred             CCcchhheeCCCCCCCCCCCccCCcccCcceEecCc-----------ccccCCccccCCCChHHHHHHHHHHHHhCCCcE
Confidence            3788888884 4455668999999999999998763           233457999999999999999999999999999


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      ++|+|   |++|+++++.+++++||+|+++.++|+++...+...... .|+++.+++.+|++++++++ ++++++|++++
T Consensus        85 ~~~~s---Gt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~  159 (392)
T 3qhx_A           85 RAFSS---GMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTG-WNVEYTPVALADLDAVRAAI-RPTTRLIWVET  159 (392)
T ss_dssp             EEESS---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEES
T ss_pred             EEECC---HHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHh-cCcEEEEeCCCCHHHHHHhh-CCCCeEEEEEC
Confidence            99999   999999999999999999999999999998887555554 79999999999999999999 88999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHH
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDL  275 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~  275 (450)
                      |+||||.+.|+++|+++|+++|+++|+|++| ..+...+..+++|++++|+||+++++|+.++|+++.+ +++.+.+...
T Consensus       160 ~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~  239 (392)
T 3qhx_A          160 PTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFL  239 (392)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH
T ss_pred             CCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHH
Confidence            9999999999999999999999999999999 5556677788999999999999999885445999886 6788888766


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      +.    ..+...++..++++...++.+..+++++.++++++.+.|++++.  .+.+|+++++|+|++++++++   |.|+
T Consensus       240 ~~----~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~---g~g~  312 (392)
T 3qhx_A          240 QN----GAGAVPGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMR---GFGG  312 (392)
T ss_dssp             HH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCS
T ss_pred             HH----hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCC---CCce
Confidence            55    45666677777777777888888999999999999999999875  788999999999999999886   7999


Q ss_pred             EEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHH
Q 013079          354 LLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW  432 (450)
Q Consensus       354 ~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i  432 (450)
                      +++|++++ .+.++.|++.++..   | +++|+|++|+++++|++.++..++.+   .+|+.+++||||+| .+++++++
T Consensus       313 ~~~~~l~~~~~~~~~~~~~l~~~---~-~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg-~e~~~~~i  384 (392)
T 3qhx_A          313 MVSVRMRAGRTAAEQLCAKTNIF---I-LAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVG-IEDVADLL  384 (392)
T ss_dssp             EEEEEETTCHHHHHHHHHHCSSS---E-ECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECC-SSCHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHhCCCc---e-ECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEec-cCCHHHHH
Confidence            99999985 56688999999863   3 79999999999998888887776655   68899999999999 99999999


Q ss_pred             HHHHHHH
Q 013079          433 SQFEKAL  439 (450)
Q Consensus       433 ~~l~~al  439 (450)
                      ++|.++|
T Consensus       385 ~~l~~al  391 (392)
T 3qhx_A          385 DDLKQAL  391 (392)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=100.00  E-value=3.7e-50  Score=403.00  Aligned_cols=380  Identities=33%  Similarity=0.506  Sum_probs=329.5

Q ss_pred             ChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           40 DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      ++.|+++|+. ....+|++.+|||.++||.+++.+++.+.+.+.    ...|.|+|+++|..+++++.||+++|.+.+++
T Consensus         5 ~~~t~~~~~~-~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~   79 (389)
T 3acz_A            5 DITTTLLHPK-GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGK----GEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAA   79 (389)
T ss_dssp             CHHHHHHSCS-SCCSTTBSSCCBCCCSBBCCSSHHHHHHHHTTC----SSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             CcceeEEecC-CCCCCCCCCCCcccCCceecCChHHHHHhhcCC----CCCcccCCCCChHHHHHHHHHHHHhCCCeEEE
Confidence            5778888865 445689999999999999999998888877653    35689999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   |++|+++++.+++++||+|+++.+.|+++...+...... .|+++.+++..|++++++++ ++++++|++++|+
T Consensus        80 ~~s---G~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~~~  154 (389)
T 3acz_A           80 FGS---GMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPR-FGIEVDLIDTSDVEKVKAAW-KPNTKMVYLESPA  154 (389)
T ss_dssp             ESS---HHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHH-TTCEEEEECTTCHHHHHHTC-CTTEEEEEEESSC
T ss_pred             eCC---HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECCC
Confidence            999   999999999988999999999999999988776443333 79999999999999999999 7899999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQ  277 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~  277 (450)
                      ||+|.+.|+++|.++|+++|+++|+|++|. .+...+..+++|++++|+||+++++|+|++|+++.++ ++++.+.....
T Consensus       155 nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~  234 (389)
T 3acz_A          155 NPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK  234 (389)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH
Confidence            999999999999999999999999999994 4444677789999999999999999998879998887 88888876554


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|...++..++.+...++.+..+++++.++++.+.+.|++++.  ++.+|+++++|.+.++.+..+   |.|+++
T Consensus       235 ----~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~---g~g~~~  307 (389)
T 3acz_A          235 ----DAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMT---GYGSTF  307 (389)
T ss_dssp             ----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEE
T ss_pred             ----hcCCCCCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCCeEE
Confidence                34555667777777777788888889999999999999999875  788999999999999988765   689999


Q ss_pred             EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      +|.+++.+....+++.+++..    .++|+|+.+|++++|.+.++..++++++..+|++++.||||+| .+++++++++|
T Consensus       308 ~~~l~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~~~~~~li~~l  382 (389)
T 3acz_A          308 LFEMKSFEAAKKLMEHLKVCT----LAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVG-IENVDDIIADL  382 (389)
T ss_dssp             EEEESSHHHHHHHHTTCSSSE----EBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHhCCCcE----ECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHHH
Confidence            999987555667777665422    5889999999999999889999999999999999999999999 99999999999


Q ss_pred             HHHHHH
Q 013079          436 EKALSR  441 (450)
Q Consensus       436 ~~al~~  441 (450)
                      .++|++
T Consensus       383 ~~al~~  388 (389)
T 3acz_A          383 KQALEL  388 (389)
T ss_dssp             HHHHTC
T ss_pred             HHHHhh
Confidence            999864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=1.2e-49  Score=399.73  Aligned_cols=376  Identities=28%  Similarity=0.431  Sum_probs=317.7

Q ss_pred             CCCChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC
Q 013079           37 AWEDPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE  115 (450)
Q Consensus        37 ~~~~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~  115 (450)
                      +.+++.++++|+ +... .+|++.+|||.++||.+++..           ...+.|.|+++.++..+++|++||+++|.+
T Consensus         4 ~~~~~~t~~~~~~~~~~-~~~~~~~pi~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~lr~~la~~~g~~   71 (393)
T 1n8p_A            4 ESDKFATKAIHAGEHVD-VHGSVIEPISLSTTFKQSSPA-----------NPIGTYEYSRSQNPNRENLERAVAALENAQ   71 (393)
T ss_dssp             SSCCHHHHHHHTTCCCC-SSCCSSCCBCCCSBCCBSSSS-----------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCS
T ss_pred             CCCCccceEEecCCCcc-CCCCcCCCcccccceeecccc-----------ccccCcceecCCChhHHHHHHHHHHHhCCC
Confidence            345787888884 4333 789999999999999987631           112468999999999999999999999998


Q ss_pred             eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEE
Q 013079          116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYF  195 (450)
Q Consensus       116 ~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i  195 (450)
                      ..++++|   |++|++++++ ++++||+|+++.++|+++...+...+.. .|+++.+++.+| ++|++++ +++|++|++
T Consensus        72 ~~i~~~s---Gt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d-~~l~~~i-~~~t~lv~~  144 (393)
T 1n8p_A           72 YGLAFSS---GSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTNDLL-NDLPQLI-KENTKLVWI  144 (393)
T ss_dssp             EEEEESC---HHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEESSHH-HHHHHHS-CSSEEEEEE
T ss_pred             cEEEECC---hHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEeCCCh-HHHHHhc-ccCceEEEE
Confidence            8999999   9999999999 8899999999999999887766545554 799999999888 9999999 788999999


Q ss_pred             ecCCCCcccccCHHHHHHHHHhc----CCEEEEeCCCCCC-CCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHH
Q 013079          196 ESISNPTLAVANIPELSRLAHDK----GVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLV  269 (450)
Q Consensus       196 ~~~~NptG~v~~l~~I~~la~~~----gi~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~  269 (450)
                      ++|+||||.++|+++|.++|+++    |+++|+|++|..+ ..++..+++|+++.|+||++|++|+|+||+++. +++++
T Consensus       145 ~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~  224 (393)
T 1n8p_A          145 ETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLY  224 (393)
T ss_dssp             CSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH
T ss_pred             ECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHH
Confidence            99999999999999999999999    9999999999332 236667789999999999999999998899987 47888


Q ss_pred             HHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC---eeeCCCCCCCchhHHHHHHhc
Q 013079          270 NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL---KVLYPGLEDHPHHELLKSMAN  346 (450)
Q Consensus       270 ~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~---~v~~p~~~~~p~~~l~~~~~~  346 (450)
                      +.+...+.    ..|..+++..++.+...++.+..++++..++++.+.+.|++++.   .+.+|++.++|.++++.+..+
T Consensus       225 ~~l~~~~~----~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~  300 (393)
T 1n8p_A          225 ERLQFLQN----AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR  300 (393)
T ss_dssp             HHHHHHHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSG
T ss_pred             HHHHHHHH----hcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCC
Confidence            88876654    34445556666655566677888888888999999999988764   466899888899999887665


Q ss_pred             cCCC-c-CcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079          347 KEYG-F-GGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG  423 (450)
Q Consensus       347 ~~~g-~-g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g  423 (450)
                         + . |++++|.++ ....+..|++.++..+    +++|+|++||++.+|+..+|..++.+++.++|++++.||||+|
T Consensus       301 ---~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~----~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g  373 (393)
T 1n8p_A          301 ---DALGGGMISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG  373 (393)
T ss_dssp             ---GGCCCSEEEEEESSCHHHHHHHHHHCSSSE----ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC
T ss_pred             ---CCCCccEEEEEeCCcHHHHHHHHhhCCcce----ECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEc
Confidence               4 5 889999998 4456888999987633    7999999999999888888888888888899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhh
Q 013079          424 YLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       424 ~~~~~~~~i~~l~~al~~~~  443 (450)
                       .+++++++++|.++|+++.
T Consensus       374 -~~~~~~~i~~l~~al~~~~  392 (393)
T 1n8p_A          374 -IEDTDDLLEDIKQALKQAT  392 (393)
T ss_dssp             -SSCHHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHhh
Confidence             9999999999999998764

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=100.00  E-value=1.8e-48  Score=392.41  Aligned_cols=378  Identities=29%  Similarity=0.460  Sum_probs=312.0

Q ss_pred             CCCChhHHHhhcC-CCCCCC-CcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCC
Q 013079           37 AWEDPAAALASAR-HEFGEH-GGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT  114 (450)
Q Consensus        37 ~~~~~~~~~~~~~-~~~~~~-~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~  114 (450)
                      +.+++.|+++|+. .....+ |++.+||+.+|||.+++..+            ...|.|+|+++|...++++.||+++|.
T Consensus        15 ~~~~~~t~~~h~g~~~~~~~~~~~~~pi~~stt~~~~~~~~------------~~~~~y~r~~~p~~~~l~~~la~~~g~   82 (403)
T 3cog_A           15 HFQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQ------------HSGFEYSRSGNPTRNCLEKAVAALDGA   82 (403)
T ss_dssp             CCTTHHHHHHHTTCCGGGSTTCBSSCCBCCCSCBCCC--------------------------CHHHHHHHHHHHHHHTC
T ss_pred             ccCCcccEEEeCCCCCCcCCCCCccCCeeccceeecCCccc------------cCCCcccCCCCchHHHHHHHHHHHhCC
Confidence            3457888888854 434457 89999999999999887532            123779999999999999999999999


Q ss_pred             CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEE
Q 013079          115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLY  194 (450)
Q Consensus       115 ~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~  194 (450)
                      +..+++++   |++|+++++. ++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ +++|++|+
T Consensus        83 ~~~i~~~s---G~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~t~~v~  156 (403)
T 3cog_A           83 KYCLAFAS---GLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASE-FGLKISFVDCSKIKLLEAAI-TPETKLVW  156 (403)
T ss_dssp             SEEEEESC---HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGG-GTCEEEEECTTSHHHHHHHC-CTTEEEEE
T ss_pred             CcEEEECC---HHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CcCCeEEE
Confidence            88888889   9999999999 8899999999999999988776545454 79999999998999999999 78999999


Q ss_pred             EecCCCCcccccCHHHHHHHHHhcC-CEEEEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHH
Q 013079          195 FESISNPTLAVANIPELSRLAHDKG-VTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVNS  271 (450)
Q Consensus       195 i~~~~NptG~v~~l~~I~~la~~~g-i~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~  271 (450)
                      +++|+||||.+.|+++|+++|+++| +++|+|++|. .....+..+++|++++|+||+++++|++++|+++. ++++++.
T Consensus       157 ~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~  236 (403)
T 3cog_A          157 IETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNR  236 (403)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHH
T ss_pred             EECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHH
Confidence            9999999999999999999999999 9999999994 33345667899999999999999888743599987 4788888


Q ss_pred             HHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCC
Q 013079          272 MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEY  349 (450)
Q Consensus       272 l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~  349 (450)
                      +.....    ..+...++..++++.+.++++..+++++.+++..+.++|++++.  ++.+|+++++|.++++.+..+   
T Consensus       237 l~~~~~----~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---  309 (403)
T 3cog_A          237 LRFLQN----SLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCT---  309 (403)
T ss_dssp             HHHHHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---
T ss_pred             HHHHHH----hcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCC---
Confidence            876554    34555566666666667788888899999999999999998876  788999999999998887654   


Q ss_pred             CcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH
Q 013079          350 GFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL  428 (450)
Q Consensus       350 g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~  428 (450)
                      +.|++++|.++ ..+...++++.+++..    .++|+|+.+|++++|++.++..++++.+..+|+++++||||+| .+++
T Consensus       310 ~~g~~~~~~l~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg-~e~~  384 (403)
T 3cog_A          310 GCTGMVTFYIKGTLQHAEIFLKNLKLFT----LAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVG-LEDE  384 (403)
T ss_dssp             CCCSEEEEEESSCHHHHHHHHHHCSSSE----ECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECC-SSCH
T ss_pred             CCceEEEEEecCCHHHHHHHHHhCCcce----EccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCH
Confidence            68999999997 4456777888776522    5899999999999999988889999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 013079          429 DQRWSQFEKALSRMQD  444 (450)
Q Consensus       429 ~~~i~~l~~al~~~~~  444 (450)
                      ++++++|.++|.++.+
T Consensus       385 ~d~i~~l~~al~~~~~  400 (403)
T 3cog_A          385 EDLLEDLDQALKAAHP  400 (403)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999988754

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=100.00  E-value=3.8e-48  Score=389.54  Aligned_cols=382  Identities=36%  Similarity=0.513  Sum_probs=295.8

Q ss_pred             ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.++++|+ +.....++++.+|+++++|+.+++.++....    ++|+.+.|.|+|+.++..+++++.+|+++|.+..+
T Consensus         9 ~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i   84 (398)
T 1gc0_A            9 GFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAAC----FAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGL   84 (398)
T ss_dssp             CHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC-------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CcCceeEeCCCCCCCCCCCcCCCccCCCccccCCHHHHHHh----hcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEE
Confidence            577777774 4434567999999999999999986554432    56677789999999999999999999999999899


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |++|+++++.+++++||+|+++.+.|+++...+...... .|+++.+++.+|++++++++ ++++++|++++|
T Consensus        85 ~~~s---G~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~  159 (398)
T 1gc0_A           85 ALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESP  159 (398)
T ss_dssp             EESS---HHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESS
T ss_pred             EECC---HHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCeEEEEECC
Confidence            9999   999999999999999999999999999998877544444 79999999999999999999 789999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHHh
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLH  276 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~  276 (450)
                      +||||.+.|+++|+++|+++|+++|+|++|. .....+...++|+++.|+||+++++|++++|+++.+++.+. .+....
T Consensus       160 ~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~  239 (398)
T 1gc0_A          160 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGL  239 (398)
T ss_dssp             CTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHH
T ss_pred             CCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHh
Confidence            9999999999999999999999999999993 22334556789999999999999999888899999887665 454433


Q ss_pred             hhhhhc-cCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          277 QGALML-LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       277 ~~~~~~-~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      .    . .+.+.++..++.+...++.+..++++..++++.+.+.|++++.  ++.+|+++++|.++++.+..+   +.|+
T Consensus       240 ~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~---~~~~  312 (398)
T 1gc0_A          240 K----DMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGG  312 (398)
T ss_dssp             H----HHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTT
T ss_pred             h----ccCCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC---CCce
Confidence            3    2 4555666666666667778888889999999999999999875  677899988898888876544   6899


Q ss_pred             EEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHH
Q 013079          354 LLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW  432 (450)
Q Consensus       354 ~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i  432 (450)
                      +++|.+++. +.+..+++.+++..    +++|+|++++++++|.+.++..++.+++..+|++++.||||+| .+++++++
T Consensus       313 ~~~~~l~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~~~~~~~i  387 (398)
T 1gc0_A          313 MIAFELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLL  387 (398)
T ss_dssp             EEEEEETTHHHHHHHHHHHCSSSE----ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-cCCHHHHH
Confidence            999999853 45677888877532    6889999999999999888889999999999999999999999 99999999


Q ss_pred             HHHHHHHHHh
Q 013079          433 SQFEKALSRM  442 (450)
Q Consensus       433 ~~l~~al~~~  442 (450)
                      ++|.++|+++
T Consensus       388 ~~l~~al~~~  397 (398)
T 1gc0_A          388 ADVQQALKAS  397 (398)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999999864

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=1.6e-47  Score=387.86  Aligned_cols=384  Identities=30%  Similarity=0.427  Sum_probs=319.7

Q ss_pred             ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.++++|+ ......+|++.+||++++||.+++.+.+...+.    ++..+|.|+|+.++..++++++||+++|.+..+
T Consensus         2 ~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v   77 (421)
T 2ctz_A            2 RFETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFA----LKEFGNIYSRIMNPTVDVLEKRLAALEGGKAAL   77 (421)
T ss_dssp             CHHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHT----TTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CcceeeeeCCCCCCcCCCCccCCeeccceeeeCCHHHHHHhhc----cccCCCcccCCCChHHHHHHHHHHHHhCCCceE
Confidence            456677774 444446899999999999999999877776653    335578999999999999999999999998889


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe-CCCCHHHHHHhhhcCCceEEEEec
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV-DISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v-~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      ++++   |++|+++++.+++++||+|+++.++|+++...+...... .|+++.++ +.+|++++++++ +++|++|++++
T Consensus        78 ~~~s---Gt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~  152 (421)
T 2ctz_A           78 ATAS---GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVES  152 (421)
T ss_dssp             EESS---HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEES
T ss_pred             EecC---HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEECCCCCHHHHHHhh-ccCCeEEEEEC
Confidence            9999   999999999998999999999999999988876433333 79999999 888999999999 78999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-C-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC--HHH----H
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-S-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP--ANL----V  269 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~--~~~----~  269 (450)
                      ++||+|.+.|+++|.++|+++|+++|+|++| + ++...+...++|++++|+||+++++|+++||+++.+  .++    +
T Consensus       153 ~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~  232 (421)
T 2ctz_A          153 IGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRY  232 (421)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTC
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccch
Confidence            9999999999999999999999999999999 3 333456667899999999999999998886777653  222    1


Q ss_pred             HHHHH----------------------HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--
Q 013079          270 NSMMD----------------------LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--  325 (450)
Q Consensus       270 ~~l~~----------------------~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--  325 (450)
                      +.+..                      .+.......|..+.+..+++...+++.+..+++++.++++++.+.|++++.  
T Consensus       233 ~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~  312 (421)
T 2ctz_A          233 PLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVA  312 (421)
T ss_dssp             HHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred             hhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCee
Confidence            22211                      111011134556777777777778888888899888999999999999865  


Q ss_pred             eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079          326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN  404 (450)
Q Consensus       326 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~  404 (450)
                      .+.+|+++++|+|++++++++.  +.|++++|.+++. +.+..|++.++..   + +++|+|+.++++.+|+..+|..++
T Consensus       313 ~v~~p~~~~~~~~~~~~~~~~~--~~g~ivsf~l~~~~~~~~~~~~~l~~~---~-~~~~~G~~~sl~~~~~~~~h~~~~  386 (421)
T 2ctz_A          313 WVNYPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLI---S-HLANVGDTRTLAIHPASTTHSQLS  386 (421)
T ss_dssp             EEECTTSTTCTTHHHHHHHHTT--CCCSEEEEEETTHHHHHHHHHHTCSSS---E-ECSCCCCSSCEEECGGGTTTTTSC
T ss_pred             EEECCCCCCCCCHHHHHHhccC--CCceEEEEEeCCCHHHHHHHHHhCCcc---e-ecccCCCCCceeeCCcccccccCC
Confidence            4557999999999999988721  6899999999863 5678899998763   3 789999999999999999999999


Q ss_pred             HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                      ++.+..+|+++++||+|+| .+++++++++|.++|
T Consensus       387 ~~~~~~~g~~~~~vRlS~g-~e~~~~li~~l~~al  420 (421)
T 2ctz_A          387 PEEQAQAGVSPEMVRLSVG-LEHVEDLKAELKEAL  420 (421)
T ss_dssp             HHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCCeEEEEeC-CCCHHHHHHHHHHHh
Confidence            9889999999999999999 999999999999986

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=100.00  E-value=5.8e-46  Score=375.37  Aligned_cols=378  Identities=32%  Similarity=0.471  Sum_probs=313.6

Q ss_pred             ChhHHHhhc-CCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALASA-RHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~~-~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      ++.+.++|+ .+.. .+|+++|||+.++|+.+++++.+.+.+. .    ...|.|++..++..+++++++|+++|.+.++
T Consensus         2 ~~~t~~~~~~~~~~-~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~----~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~   75 (412)
T 2cb1_A            2 EYTTLAVLAGLPED-PHGAVGLPIYAVAAYGFKTLEEGQERFA-T----GEGYVYARQKDPTAKALEERLKALEGALEAV   75 (412)
T ss_dssp             CHHHHHHHTTCCCC-TTCCSSCCCCCCSBCCCSSHHHHHHHHH-H----CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CccceeeecCCCcC-CCCCcCCCccccceeecCChHHHHHHhc-c----ccCcCcCCCCChHHHHHHHHHHHHhCCCcEE
Confidence            455666774 4333 6899999999999999999888777765 2    2458899999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +|+|   |++|+++++.+++++||+|+++.++|+++...+...... .|+++.+++.+ +++|++++ ++++++|++++|
T Consensus        76 ~~~~---gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~l~~~i-~~~~~~v~~~~~  149 (412)
T 2cb1_A           76 VLAS---GQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL-MGVTVRYVDPE-PEAVREAL-SAKTRAVFVETV  149 (412)
T ss_dssp             EESS---HHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT-TTCEEEEECSS-HHHHHHHC-CTTEEEEEEESS
T ss_pred             EECC---HHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCC-HHHHHHHh-ccCCeEEEEeCC
Confidence            9999   999999999999999999999999999988777554554 79999999864 99999999 789999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCCC-C-CCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH----------
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P-LVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA----------  266 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~~-~-~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~----------  266 (450)
                      +||+|.+.|+++|+++|+++|+++|+|++|+ . +...+...++|+++.|+||+++++|+++||+++.++          
T Consensus       150 ~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~  229 (412)
T 2cb1_A          150 ANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQF  229 (412)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGG
T ss_pred             CCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEecccccccccccc
Confidence            9999999999999999999999999999993 3 455666778999999999999999998866666652          


Q ss_pred             -----------------HHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--ee
Q 013079          267 -----------------NLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KV  327 (450)
Q Consensus       267 -----------------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v  327 (450)
                                       ++.+.++...   ....|..+.+..++.....++.+..++++..++++++.+.|.+++.  .+
T Consensus       230 ~~~~~~g~~~~~~~~~~~~~~~~r~~~---~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v  306 (412)
T 2cb1_A          230 LQPDLKGQIPWEALRARCFPERVRTLG---LSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKAL  306 (412)
T ss_dssp             GCC-------HHHHGGGHHHHHHHHHH---TTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEE
T ss_pred             ccccccccchhhccchHHHHHHHHHHH---HHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence                             2333333322   1133445567777776667788888888888899999999998754  47


Q ss_pred             eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHH
Q 013079          328 LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEE  407 (450)
Q Consensus       328 ~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~  407 (450)
                      .+|+.+++|+|++++++++   +.|++++|.+.+.+....+++.+.+   + . +.|+|+.++++.+|++..+..+++++
T Consensus       307 ~~p~~~~~p~~~~~~~~~~---~~~~iv~~~~~~~~~~~~~l~~~~i---~-~-~~s~g~~~sl~~~~~~~~~~~~~~~~  378 (412)
T 2cb1_A          307 RYPGLPEDPAHRNARKYLA---SGGPILTLDLGDLERASRFLGAIRL---L-K-AANLGDARTLLVHPWTTTHSRLKEEA  378 (412)
T ss_dssp             ECTTSTTCTTHHHHHHHCS---SSCSEEEEECSSHHHHHHHHHHCSS---E-E-CSCCSCSSCEEECTTTTTTTTSCHHH
T ss_pred             ECCCCCCCccHHHHHHhCC---CCceEEEEEeCCHHHHHHHHHhCCe---e-e-ecccCCCcceeecCcccccccCCHHH
Confidence            7899999999999999886   6899999999544455666666553   1 2 66888999999888888888889999


Q ss_pred             HHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          408 KALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       408 ~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      +.++|++++.||+|+| .+++++++++|.++|++
T Consensus       379 ~~~~g~~~~~iR~s~g-~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          379 RLQAGVTPGLVRVSVG-LEDPLDLLALFEEALEA  411 (412)
T ss_dssp             HHHTTCCTTEEEEECC-SSCHHHHHHHHHHHHHC
T ss_pred             HHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence            9999999999999999 99999999999999875

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=100.00  E-value=7e-46  Score=373.74  Aligned_cols=385  Identities=34%  Similarity=0.555  Sum_probs=320.5

Q ss_pred             CChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      |++.++++|+......++++.+|++.++++.++.+.++.+.+..    +.+.|.|++.+++..+++++.||+++|.+.++
T Consensus         6 ~~~~t~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i   81 (404)
T 1e5e_A            6 MTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAG----QESGYIYTRLGNPTVSNLEGKIAFLEKTEACV   81 (404)
T ss_dssp             CCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTT----SSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CCccceeeecCCCCCCCCCcCCCCcCCCccccCCHHHHHHhhcC----CcCCccccCCcChHHHHHHHHHHHHhCCCcEE
Confidence            45777877754324457899999999999999988666555433    34568899988999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |++|+++++.+++++||+|+++.|.|+++...+...... .|+++.+++.+|+++|++++ +++|++|++++|
T Consensus        82 ~~~~---g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~t~~v~l~~p  156 (404)
T 1e5e_A           82 ATSS---GMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFETP  156 (404)
T ss_dssp             EESS---HHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEESS
T ss_pred             EeCC---hHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEEECCCCHHHHHHhc-CCCCcEEEEECC
Confidence            9999   999999999999999999999999999998854332333 79999999988999999999 789999999999


Q ss_pred             CCCcccccCHHHHHHHHHh-cCCEEEEeCCCCCCC-CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHH
Q 013079          199 SNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDL  275 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~~-~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~  275 (450)
                      +||||.+.|+++|+++|++ +|+++|+|++|..+. ..+..+++|+++.|+||+++++|+|++|++++++++++ .+...
T Consensus       157 ~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~  236 (404)
T 1e5e_A          157 ANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG  236 (404)
T ss_dssp             CTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC
T ss_pred             CCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH
Confidence            9999999999999999999 999999999995443 35666789999999999999999987799999988877 66554


Q ss_pred             hhhhhhcc-CCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          276 HQGALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       276 ~~~~~~~~-g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      ..    .. +...++..++++...++.+..++++..++++.+.+.|++++.  ++.+|.+++.|.++++....+   +.|
T Consensus       237 ~~----~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g  309 (404)
T 1e5e_A          237 IK----DITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYG  309 (404)
T ss_dssp             CC----CCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCC
T ss_pred             HH----hCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCC---CCc
Confidence            43    23 444555555555556677778888888899999999998864  577899998999988887654   679


Q ss_pred             cEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          353 GLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       353 ~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      +++.|.+++. +...++++.+++..    .++|+|+.+|++.+|++.++..++++++...|+++++||||+| .++.+++
T Consensus       310 ~~~~~~~~~~~~~~~~~l~~~~i~~----~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g-~e~~~~l  384 (404)
T 1e5e_A          310 SMITFILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADEL  384 (404)
T ss_dssp             SEEEEEETTHHHHHHHHHHTCSSSE----ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHH
T ss_pred             eEEEEEeCCCHHHHHHHHHhCCCce----eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC-CCCHHHH
Confidence            9999999864 44566776665421    5788999999999999988989999999999998899999999 8999999


Q ss_pred             HHHHHHHHHHhhh
Q 013079          432 WSQFEKALSRMQD  444 (450)
Q Consensus       432 i~~l~~al~~~~~  444 (450)
                      +++|.+++..+.+
T Consensus       385 i~~l~~al~~~~~  397 (404)
T 1e5e_A          385 IADFKQGLDALLR  397 (404)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=100.00  E-value=3e-44  Score=361.11  Aligned_cols=383  Identities=35%  Similarity=0.568  Sum_probs=313.2

Q ss_pred             CChhHHHhhcC-CCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           39 EDPAAALASAR-HEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        39 ~~~~~~~~~~~-~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      +++.++++|+. .....++++..|++.++++..+.+.+....    +.++.+.|.|+++.++..+++++++++++|.+..
T Consensus         7 ~~~~t~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~   82 (398)
T 2rfv_A            7 YGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAAR----FALEESGYIYTRLGNPTTDALEKKLAVLERGEAG   82 (398)
T ss_dssp             SCHHHHHHHTTCCCCTTTCCSSCCCCCCSBCCCSSHHHHHHH----C-----CCSBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred             CCCceeEeecCCcCccCCCCcCCCCcCCCccccCCHHHHHHh----hcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcE
Confidence            46778888854 334567899999999999999987544433    4455677999999999999999999999999988


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      +++++   |++|+++++++++++||+|+++.+.|+++...+...... .|.++.+++.+|++++++++ ++++++|++++
T Consensus        83 i~~~s---G~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~~~  157 (398)
T 2rfv_A           83 LATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAAKPEEIRAAM-RPETKVVYIET  157 (398)
T ss_dssp             EEESS---HHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEEES
T ss_pred             EEECC---HHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHhc-CCCCeEEEEEC
Confidence            99999   999999999999999999999999999998876433233 68999999999999999999 78999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHH
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDL  275 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~  275 (450)
                      |+||||.+.|+++|+++|+++|+++|+|++|. .....+..+++|+++.|+||+++++|+|++|+++.++++++ .+...
T Consensus       158 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~  237 (398)
T 2rfv_A          158 PANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG  237 (398)
T ss_dssp             SBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHH
Confidence            99999999999999999999999999999994 33335666789999999999999999887799999988876 55443


Q ss_pred             hhhhhhcc-CCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          276 HQGALMLL-GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       276 ~~~~~~~~-g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      ..    .. +.+.++..++.+...++.+..++++..++++.+.+.|++++.  .+.+|.++..|.++++....+   +.|
T Consensus       238 ~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~---~~g  310 (398)
T 2rfv_A          238 LK----DITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---LPG  310 (398)
T ss_dssp             HH----HTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---SCC
T ss_pred             HH----hCCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCC---CCc
Confidence            33    22 344455555554555566777888888899999999998874  677888888888888765433   678


Q ss_pred             cEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          353 GLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       353 ~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      ++++|++++. +....+++.+...   | ++++.|+.++++.++.+.++..++.+++..+|++++.||||+| .++++++
T Consensus       311 ~~~~~~~~~~~~~~~~l~~~~~~~---~-i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~-~~~~~~~  385 (398)
T 2rfv_A          311 GIISFEIAGGLEAGRRMINSVELC---L-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPEDI  385 (398)
T ss_dssp             SEEEEEETTHHHHHHHHHTTCSSS---E-ECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECC-SSCHHHH
T ss_pred             eEEEEEEcCCHHHHHHHHHhCCcc---e-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEec-CCCHHHH
Confidence            9999999853 4567787777653   3 7899999999988887777778888888899998999999999 9999999


Q ss_pred             HHHHHHHHHHh
Q 013079          432 WSQFEKALSRM  442 (450)
Q Consensus       432 i~~l~~al~~~  442 (450)
                      +++|.++|+++
T Consensus       386 i~~l~~al~~~  396 (398)
T 2rfv_A          386 INDLEHAIRKA  396 (398)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999865

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=100.00  E-value=5.2e-42  Score=343.29  Aligned_cols=374  Identities=29%  Similarity=0.410  Sum_probs=300.9

Q ss_pred             CChhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           39 EDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        39 ~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      +++.++++| |+.....+|++.+||+.++|+.+++.           ++ ...|.|+++.++...++++.||++++.+..
T Consensus         3 ~~~~t~~~~~~~~~~~~~~~~~~pi~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~l~~~la~~~~~~~~   70 (386)
T 1cs1_A            3 RKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGF-----------NE-PRAHDYSRRGNPTRDVVQRALAELEGGAGA   70 (386)
T ss_dssp             CCHHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBT-----------TB-CCSCSBTTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred             CCcceeEEecCCCccccCCCCCCCccccceeecccc-----------CC-CCCcceeCCCCccHHHHHHHHHHHhCCCcE
Confidence            356677777 44444568999999999999998652           11 246889999999999999999999998888


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      +++++   |++|+++++++++++||+|+++.++|+++...+...... .|.++.+++.+|++++++++ ++++++|++++
T Consensus        71 i~~~s---Gt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~  145 (386)
T 1cs1_A           71 VLTNT---GMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVES  145 (386)
T ss_dssp             EEESS---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEEC
T ss_pred             EEeCC---HHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHhh-ccCCcEEEEeC
Confidence            88899   999999999998999999999999999877766444343 79999999988999999999 78899999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHH
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDL  275 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~  275 (450)
                      |+||||.+.|+++|.++|+++|+++|+|++|..+. ..+...++|+++.|+||++++++.++||+++.++ ++++.+...
T Consensus       146 ~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~  225 (386)
T 1cs1_A          146 PSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW  225 (386)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHH
Confidence            99999999999999999999999999999994433 3455678999999999999989888779988875 788888765


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      ..    ..+...++..++.+...++.+..+.++..++++.+.+.|++++.  .+.+|.+...|.++++....+   +.|+
T Consensus       226 ~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~~~  298 (386)
T 1cs1_A          226 AN----NIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGA  298 (386)
T ss_dssp             HH----HHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCS
T ss_pred             HH----hcCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcC---CCce
Confidence            54    22333444444444445566777788888889999999988765  556788888888888776533   6789


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccc---cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVS---LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ  430 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs---~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~  430 (450)
                      +++|.+++.  .+.+...|..   .| +.++   +|+..|++++|.+..+...+.+.+..+|+.++.||||+| .+++++
T Consensus       299 ~~~~~~~~~--~~~~~~~l~~---~g-i~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~-~~~~~~  371 (386)
T 1cs1_A          299 MLSFELDGD--EQTLRRFLGG---LS-LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGED  371 (386)
T ss_dssp             EEEEEESSC--HHHHHHHHHT---CS-SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHH
T ss_pred             EEEEEECCC--HHHHHHHHHh---CC-cceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEc-cCCHHH
Confidence            999999742  2333344433   22 3443   788888888888777777788888888998899999999 999999


Q ss_pred             HHHHHHHHHHHhh
Q 013079          431 RWSQFEKALSRMQ  443 (450)
Q Consensus       431 ~i~~l~~al~~~~  443 (450)
                      +++.|.++|+++.
T Consensus       372 ~i~~l~~al~~~~  384 (386)
T 1cs1_A          372 LIADLENGFRAAN  384 (386)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=100.00  E-value=1.6e-41  Score=347.03  Aligned_cols=373  Identities=29%  Similarity=0.460  Sum_probs=300.6

Q ss_pred             CChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           39 EDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      +.+.+.+++-....+..+++++||+.++++.+++..            ....|.|++.+++..+++++.+++++|++.++
T Consensus        85 ~~~~~~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~------------~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i  152 (464)
T 1ibj_A           85 ASVSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAI------------ENGPYDYTRSGNPTRDALESLLAKLDKADRAF  152 (464)
T ss_dssp             CCHHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSS------------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CCcCCeEEECCCCCCCCCCCCccHHhhhhhhhhccc------------ccCCccccCCCCHHHHHHHHHHHHHhCCCeEE
Confidence            456666776432113567899999999998765421            02357788999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |++|+++++. ++++||+|+++.+.|+++...+...... .|.++.+++.+|+++|++++ ++++++|++++|
T Consensus       153 ~~~s---Gt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v~~~d~~~l~~~i-~~~tk~v~l~~p  226 (464)
T 1ibj_A          153 CFTS---GMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESP  226 (464)
T ss_dssp             EESS---HHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSS
T ss_pred             EECC---HHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHH-cCCEEEEeCCCCHHHHHHHh-ccCceEEEEeCC
Confidence            9999   9999998885 7899999999999999998776544443 79999999999999999999 789999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccC-ccceEEEEEcC-HHHHHHHHHH
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGG-ADIIAGAVCGP-ANLVNSMMDL  275 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~-g~~igG~l~~~-~~~~~~l~~~  275 (450)
                      +||||.+.|+++|+++|+++|+++|+|++| .+....+..+++|++++|+||+++++ |.++ |+++++ +++++.+...
T Consensus       227 ~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~-G~l~~~~~~l~~~l~~~  305 (464)
T 1ibj_A          227 TNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMA-GVLAVKGEKLAKEVYFL  305 (464)
T ss_dssp             CTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCC-EEEEECSHHHHHHHHHH
T ss_pred             CCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcE-EEEEEChHHHHHHHHHH
Confidence            999999999999999999999999999999 44445566789999999999999865 6565 898887 4788877665


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      +.    ..|...++..++++...++.+..++++...+...+.+.|++++.  ++.++.+..+|.++++....   .+.|+
T Consensus       306 ~~----~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~---~g~g~  378 (464)
T 1ibj_A          306 QN----SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQA---KGAGS  378 (464)
T ss_dssp             HH----HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTC---SCCCS
T ss_pred             HH----hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccC---CCCce
Confidence            54    34444555555555556677777888877888888899988763  77889998888877765433   36789


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      +++|.+++.+....|++.|...   | ++++.|+.++++++|+..++...+.+.+..+|+++++||||+| .++.+++++
T Consensus       379 ~~~~~l~~~~~~~~~~~~L~~~---g-i~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg-~edi~~li~  453 (464)
T 1ibj_A          379 VFSFITGSVALSKHLVETTKYF---S-IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLIS  453 (464)
T ss_dssp             EEEEECSCHHHHHHHHHHCSSS---E-ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHH
T ss_pred             EEEEEECCHHHHHHHHHhcCcc---e-EeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeC-CCCHHHHHH
Confidence            9999997655456788888753   3 7999999999999887766666665566667888899999999 899999999


Q ss_pred             HHHHHHHHh
Q 013079          434 QFEKALSRM  442 (450)
Q Consensus       434 ~l~~al~~~  442 (450)
                      +|.++|.++
T Consensus       454 ~L~~al~~~  462 (464)
T 1ibj_A          454 DLDIAFKTF  462 (464)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHhhc
Confidence            999998753

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=100.00  E-value=4.4e-37  Score=300.73  Aligned_cols=323  Identities=33%  Similarity=0.541  Sum_probs=259.3

Q ss_pred             HHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHH
Q 013079          103 NLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN  182 (450)
Q Consensus       103 ~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~  182 (450)
                      ++++.+|+++|.+..+++++   |++|+++++.+++++||+|+++.++|+++...+..+... .|.++.+++..|+++++
T Consensus         2 ~l~~~la~~~g~~~~i~~~s---G~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~d~~~l~   77 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATAS---GMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIE   77 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHH
T ss_pred             hHHHHHHHHhCCCeEEEeCC---hHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHh-cCCEEEEeCCCCHHHHH
Confidence            68999999999998899999   999999999998999999999999999987776432222 68899999988999999


Q ss_pred             HhhhcCCceEEEEecCCCCcccccCHHHHHHHHHh-cCCEEEEeCCCCCC-CCCccCCCCeEEEeCCCCccccCccceEE
Q 013079          183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLAHD-KGVTVVVDNTFSPL-VLSPARLGADVVVHSISKFISGGADIIAG  260 (450)
Q Consensus       183 ~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~-~gi~livD~~~~~~-~~~~~~~g~di~~~S~sK~~g~~g~~igG  260 (450)
                      +++ ++++++|++++|+||||.+.|+++|.++|++ +|+++|+|++|... ...+.+.++|+++.|+||+++++|+|++|
T Consensus        78 ~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G  156 (331)
T 1pff_A           78 KHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAG  156 (331)
T ss_dssp             HTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCE
T ss_pred             Hhh-cCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEE
Confidence            999 7889999999999999999999999999999 99999999999322 22344678999999999999999988559


Q ss_pred             EEEcCH-HHHHHHHHHhhhhhhc-cCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCc
Q 013079          261 AVCGPA-NLVNSMMDLHQGALML-LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHP  336 (450)
Q Consensus       261 ~l~~~~-~~~~~l~~~~~~~~~~-~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p  336 (450)
                      +++.++ ++++.+.....    . .+...++..++.+...++.+..+.++..++.+.+.+.|++++.  .+.++.+.+.|
T Consensus       157 ~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~  232 (331)
T 1pff_A          157 LVCSRADIIAKVKSQGIK----DITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHP  232 (331)
T ss_dssp             EEEECHHHHHHHHHTCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTST
T ss_pred             EEEeCcHHHHHHHHHHHH----hhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCc
Confidence            999998 88887765544    2 3344444444444444555666777778888888999988743  56678888888


Q ss_pred             hhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079          337 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG  416 (450)
Q Consensus       337 ~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~  416 (450)
                      ...++....+   +.|++++|.+++.+....+++...+.    ..++|+|+.+|++.+++...+..++.+.+..+|++++
T Consensus       233 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~gI~----~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~  305 (331)
T 1pff_A          233 GHEIAKKQMK---MFGSMIAFDVDGLEKAKKVLDNCHVV----SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDN  305 (331)
T ss_dssp             THHHHHHHCS---SCCSEEEEECSSHHHHHHHHHTCSSS----EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTT
T ss_pred             cHHHHHhhCC---CCceEEEEEECCHHHHHHHHHhCCCc----eeccCCCCcceeeecchhhcccccCHHHHHhcCCCCC
Confidence            7777765443   67899999998544444444443321    0267899999998888777777788888888999889


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          417 LVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       417 ~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .||||+| .++++++++.+.++|+++
T Consensus       306 ~iRis~~-~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          306 LIRLSVG-CENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             EEEEECC-SSCHHHHHHHHHHHHHTC
T ss_pred             eEEEEEe-cCCHHHHHHHHHHHHHHh
Confidence            9999999 999999999999998753

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=100.00  E-value=1.3e-32  Score=277.16  Aligned_cols=331  Identities=18%  Similarity=0.200  Sum_probs=252.5

Q ss_pred             CCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE---ecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhHHHHH--
Q 013079           85 GPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALL--  158 (450)
Q Consensus        85 ~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~---tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~~~~~--  158 (450)
                      .+++++|.|++.   .++++++.+|+++|++.+++   ++|   |++|+.+++.+++++||+|++++ +.|+++...+  
T Consensus        62 ~~~~~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~s---Gt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~  135 (427)
T 3i16_A           62 FTNSSGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVN---GTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGI  135 (427)
T ss_dssp             SCCCCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCS---HHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTC
T ss_pred             cCCCCCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCcc---HHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhc
Confidence            344677888865   48999999999999998877   899   99999999999999999999998 9999887665  


Q ss_pred             -----HHhCCCccCeeEEEeCC-----CCHHHHHHhhhc--CCceEEEEec----CCCCcccccCHHHHHHHHHh--cCC
Q 013079          159 -----THFFPRACNITTTFVDI-----SDHEMVNSAIVQ--GRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGV  220 (450)
Q Consensus       159 -----~~~~~~~~g~~v~~v~~-----~d~~~l~~ai~~--~~t~lv~i~~----~~NptG~v~~l~~I~~la~~--~gi  220 (450)
                           ...+.. .|+++++++.     .|++++++++ +  ++|++|++++    |+||+|.+.|+++|+++|++  +|+
T Consensus       136 ~~~~~~~~l~~-~G~~~~~v~~~~~g~~D~e~l~~~l-~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~  213 (427)
T 3i16_A          136 TENSNMGSLKE-FGINYKQVDLKEDGKPNLEEIEKVL-KEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDI  213 (427)
T ss_dssp             SCCCSSCCTGG-GTCEEEECCCCTTSSCCHHHHHHHH-HTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTS
T ss_pred             cccchHHHHHH-cCCEEEEecCccCCCcCHHHHHHHh-hCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCC
Confidence                 123333 6999999987     4999999999 6  7899999999    99999999999999999999  999


Q ss_pred             EEEEeCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH-H-HHHHHH
Q 013079          221 TVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP-K-VAFELS  296 (450)
Q Consensus       221 ~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~-~-~a~~~~  296 (450)
                      ++|+|++|+.+  ...+...++|++++|+||++|++|...||++++++++++.+.......  ..|....+ . .+++++
T Consensus       214 ~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~--~~g~~~~~~~~~a~~~l  291 (427)
T 3i16_A          214 ICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVP--GIGGECGSTFGVVRSMY  291 (427)
T ss_dssp             EEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT--TTGGGCCCCTTCHHHHH
T ss_pred             EEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccC--ccCccCCccHHHHHHHH
Confidence            99999999443  467777899999999999999887666799999999999887643211  12211111 2 256667


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079          297 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA  376 (450)
Q Consensus       297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~  376 (450)
                      ++++.+..|++++.+++.++++.|+++|.+| +|+ +++|.|+             .+++|.+.+.+.+.+|++.|+...
T Consensus       292 ~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~~~-------------~i~~i~l~~~~~~~~f~~~l~~~~  356 (427)
T 3i16_A          292 QGLFLAPHISMEALKGAILCSRIMELAGFEV-MPK-YDEKRSD-------------IIQSIKFNDKDKLIEFCKGIQTGS  356 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCCSS-------------SCEEEECSSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCCcc-------------EEEEEEECCHHHHHHHHHHHhhcC
Confidence            7788888999999999999999999999988 787 6666643             289999998888999999998632


Q ss_pred             ccccc-----ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          377 QFGFM-----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       377 ~~g~i-----~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ..+..     ....|..+.++...+.- -+..+.|.-....+.+.++...-| -.+-+...-.+..++.++
T Consensus       357 ~~~s~~~p~~~~~~gy~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  425 (427)
T 3i16_A          357 PIDSFVSCEPWDMPGYTDQVIMAAGAF-IQGSSIELSADAPIREPYIAYLQG-GLTFDHAKIGILIALSRI  425 (427)
T ss_dssp             SSSTTSCCCCBCC---CCCEEEEECCS-STTCSSSSEEEEESCTTCEEEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred             cccccccCcCCCCCCCCCceeeccCcC-CCCccccccCCCCCCCCeEEEEcC-CccHHHHHHHHHHHHHHH
Confidence            11111     12345555554443331 111111111223456788999999 878888877888887765

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=100.00  E-value=1.2e-32  Score=276.45  Aligned_cols=330  Identities=19%  Similarity=0.216  Sum_probs=251.8

Q ss_pred             CCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE---ecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhHHHHHH--
Q 013079           86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT--  159 (450)
Q Consensus        86 n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~---tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~--  159 (450)
                      ++++.|.|++.   ..+++++.+|+++|++.+++   |+|   |++|+.+++.+++++||+|+++. +.|.++...+.  
T Consensus        49 ~~~~~~~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~s---Gt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~  122 (409)
T 3jzl_A           49 HPSTGYGYDDE---GRDTLERVYATVFKTEAALVRPQIIS---GTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIR  122 (409)
T ss_dssp             CCCCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTSCS---HHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSS
T ss_pred             CCCcCCCCChh---HHHHHHHHHHHHhCCCcEEEECCCcc---HHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcc
Confidence            44677888865   58899999999999998877   899   99999999999999999999998 99999886652  


Q ss_pred             ----HhCCCccCeeEEEeCC-----CCHHHHHHhhhcCCceEEEEec----CCCCcccccCHHHHHHHHHh--cCCEEEE
Q 013079          160 ----HFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGVTVVV  224 (450)
Q Consensus       160 ----~~~~~~~g~~v~~v~~-----~d~~~l~~ai~~~~t~lv~i~~----~~NptG~v~~l~~I~~la~~--~gi~liv  224 (450)
                          ..+.. .|+++.+++.     .|++++++++ +++|++|++++    |+||+|.+.|+++|+++|++  +|+++|+
T Consensus       123 g~~~~~l~~-~G~~~~~v~~~~~g~~d~e~l~~ai-~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~liv  200 (409)
T 3jzl_A          123 KQGQGSLKD-FHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFV  200 (409)
T ss_dssp             SSSSSCTGG-GTCEEEECCCCTTSCCCHHHHHHHC-CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cchhhHHHH-cCCEEEEeCCCCCCCcCHHHHHHhc-cCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEE
Confidence                23333 6899999987     5999999999 88999999999    99999999999999999999  9999999


Q ss_pred             eCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCC
Q 013079          225 DNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIP  300 (450)
Q Consensus       225 D~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~  300 (450)
                      |++|+.+  ...+...++|++++|+||++++++.++||++++++++++.+.....  +.....++.+.+.  +.++++++
T Consensus       201 D~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~--~~~l~gl~  278 (409)
T 3jzl_A          201 DNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL--LEMYQGFF  278 (409)
T ss_dssp             ECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCH--HHHHHHHH
T ss_pred             eCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHH--HHHHHHHh
Confidence            9999544  3567778999999999999998887778999999999998876432  1112344444322  33455667


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013079          301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF  380 (450)
Q Consensus       301 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~  380 (450)
                      .+..+++++.+++.++++.|+++|.++ +|+ +++|.|             ..+++|.+++.+.+.+|++.|+.....+.
T Consensus       279 ~~~~r~~~~~~~a~~la~~L~~~g~~v-~p~-~~~~~~-------------~~i~~i~l~~~~~~~~~~~~L~~~~~~~s  343 (409)
T 3jzl_A          279 LAPHVTAQAIKGARFTAAMLAEFGVEA-DPV-WDAPRT-------------DLIQSVSFHNKEKMVAFAQAIQAASPVNA  343 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCCS-------------SSCCEEECSCHHHHHHHHHHHHHTSSSST
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCcc-cCC-CCCCCc-------------cEEEEEEeCCHHHHHHHHHHHHhcCcccc
Confidence            788899999999999999999999987 776 555553             33899999988889999999986321111


Q ss_pred             c-----ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          381 M-----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       381 i-----~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .     ....|..+.++...+.- -+..+.|.-....+.+.++...-| -.+-+...-.+..++.++
T Consensus       344 ~~~p~~~~~~gy~~~~~~~~~~f-~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  408 (409)
T 3jzl_A          344 HVLPIGAYMPGYEDDVIMAAGTF-IQGASLELTADGPIREPYQLYVQG-GLTYEHIKIAVTRAIQKI  408 (409)
T ss_dssp             TSCCCCBCCTTCSSCEEEECCCS-STTCSSSCEEEEESSTTTEEEEEC-CSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCceeEecccc-CCCcceeecCCCCCCCCeEEEEcC-CccHHHHHHHHHHHHHhh
Confidence            1     11224444444433321 111111111223456788999999 878888777777777664

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=5.9e-32  Score=272.40  Aligned_cols=331  Identities=21%  Similarity=0.237  Sum_probs=249.7

Q ss_pred             CCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE---ecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhHHHHHH
Q 013079           84 LGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT  159 (450)
Q Consensus        84 ~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~---tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~  159 (450)
                      +++ ..+|.|++.   .++++++.+|+++|++.+++   ++|   |++|+.+++.+++++||+|++.+ +.|+++...+.
T Consensus        63 ~~~-~~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~s---Gt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g  135 (427)
T 3hvy_A           63 FTN-SSGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVN---GTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIG  135 (427)
T ss_dssp             SCC-CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCS---HHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHT
T ss_pred             ccc-CcCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCc---HHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhc
Confidence            444 567888765   48999999999999998888   899   99999999999999999999998 99998875551


Q ss_pred             -------HhCCCccCeeEEEeCC----CCHHHHHHhhhc--CCceEEEEec----CCCCcccccCHHHHHHHHHh--cCC
Q 013079          160 -------HFFPRACNITTTFVDI----SDHEMVNSAIVQ--GRTKVLYFES----ISNPTLAVANIPELSRLAHD--KGV  220 (450)
Q Consensus       160 -------~~~~~~~g~~v~~v~~----~d~~~l~~ai~~--~~t~lv~i~~----~~NptG~v~~l~~I~~la~~--~gi  220 (450)
                             ..+.. .|+++.+++.    .|+++|++++ +  ++|++|++++    |+||+|.+.|+++|+++|++  +|+
T Consensus       136 ~~~~~~~~~l~~-~G~~~~~v~~~~~~~d~e~l~~~i-~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~  213 (427)
T 3hvy_A          136 MDDSKKVGSLRE-YGVKYKMVDLKDGKVDINTVKEEL-KKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENV  213 (427)
T ss_dssp             CCTTCCSCCTGG-GTCEEEECCCBTTBCCHHHHHHHH-HHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSS
T ss_pred             cccchhhhHHHH-cCCEEEEecCCCCCcCHHHHHHHh-hCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCC
Confidence                   22333 6999999987    6999999999 6  7999999999    99999999999999999999  899


Q ss_pred             EEEEeCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHH
Q 013079          221 TVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       221 ~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~  296 (450)
                      ++++|++|+.+  ...+...++|++++|+||+++++|.+.||++++++++++.++....  +.....++++.  .+++++
T Consensus       214 ~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~~  291 (427)
T 3hvy_A          214 IVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFG--VMRSLY  291 (427)
T ss_dssp             EEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHH
T ss_pred             EEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHH--HHHHHH
Confidence            99999999443  4577778999999999999998876678999999999999877432  11112222222  245566


Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079          297 ERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA  376 (450)
Q Consensus       297 ~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~  376 (450)
                      ++++.++.+++++.+++.++++.|+++|.++ +|+ +++|.|             ..+++|.+.+.+.+.+|++.|+...
T Consensus       292 ~gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~-~~~~~~-------------~li~~~~l~~~~~~~~f~~~l~~~~  356 (427)
T 3hvy_A          292 EGLFMAPHVTIEAVKGAVFCARIMELAGFDV-LPK-YNDKRT-------------DIIQAIKFNDEKKLIDFIKGIQTAS  356 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESC-TTSCCS-------------SSEEEEECSSHHHHHHHHHHHHHTC
T ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHhCCCee-cCC-CCCCCc-------------eEEEEEeCCCHHHHHHHHHHhcccc
Confidence            6777788899999999999999999999987 777 655554             3389999998888999999998632


Q ss_pred             ccccc-----ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          377 QFGFM-----AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       377 ~~g~i-----~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ..+..     ....|..+.++.+.+.- -+..+.|.-....+.+.++...-| -.+-+...-.+..++.++
T Consensus       357 ~~~s~~~p~~~~~~Gy~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  425 (427)
T 3hvy_A          357 PVDSFVQCEAWDMPGYEDKVIMAAGTF-VQGASIELSADAPIREPYIGYLQG-GLTFDHAKLGVLIALSKL  425 (427)
T ss_dssp             SSSTTCCC----------CEEEECCCS-STTCSSSSEEEEESCTTCEEEEEC-CSSHHHHHHHHHHHHHTT
T ss_pred             ccccccCCCCCCCCCCcCceeeecccc-CCCccccccCCCCCCCCeeEEEcC-CccHHHHHHHHHHHHHHh
Confidence            11111     12234444444443321 111111112224556788999999 888888877788887765

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.98  E-value=1.2e-31  Score=266.18  Aligned_cols=335  Identities=13%  Similarity=0.128  Sum_probs=228.7

Q ss_pred             cCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc---
Q 013079           65 SATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC---  138 (450)
Q Consensus        65 att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~---  138 (450)
                      +++++.+. .+++.+.+...++||.+.|.+++...+..+++++.+|+++|.+  .+++|+|   |++|+.+++.+++   
T Consensus         8 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g---~~~a~~~~~~~~~~~~   84 (382)
T 4hvk_A            8 SAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSG---ATEANNLAIIGYAMRN   84 (382)
T ss_dssp             TCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESS---HHHHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECC---chHHHHHHHHHhhhhh
Confidence            33444444 4788888888888888888888878889999999999999975  5899999   9999999999887   


Q ss_pred             -cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHH
Q 013079          139 -SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS  212 (450)
Q Consensus       139 -~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~  212 (450)
                       ++||+|+++.++|+++...+... .+ .|.++.+++.+     |+++|++++ ++++++|++++++||||.+.|+++|.
T Consensus        85 ~~~gd~vi~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~  161 (382)
T 4hvk_A           85 ARKGKHILVSAVEHMSVINPAKFL-QK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHANNEIGTIQPVEEIS  161 (382)
T ss_dssp             GGGCCEEEEETTCCHHHHHHHHHH-HH-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHH
T ss_pred             cCCCCEEEECCCCcHHHHHHHHHH-Hh-cCCEEEEeccCCCCCcCHHHHHHHh-ccCceEEEEECCCCCceeeCCHHHHH
Confidence             89999999999999998876433 22 58899998865     899999999 88999999999999999999999999


Q ss_pred             HHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh---hhhccCCCc
Q 013079          213 RLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG---ALMLLGPTM  287 (450)
Q Consensus       213 ~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~---~~~~~g~~~  287 (450)
                      ++|+++|+ +|+|++|  +....+....++|+++.|+||++|++|  + |+++.+++.  .+.....+   .......+.
T Consensus       162 ~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g--~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  235 (382)
T 4hvk_A          162 EVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEA--KLQPVILGGGQENGLRSGSE  235 (382)
T ss_dssp             HHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTT--C-EEEEEETTC--CCCCSSCSSCTGGGTSCSCC
T ss_pred             HHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCc--e-EEEEEcCcc--CcCcccccCCCcCccccCCc
Confidence            99999999 9999998  333334444578999999999988777  4 666554432  11111000   000112222


Q ss_pred             hH--HHHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079          288 NP--KVAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE  362 (450)
Q Consensus       288 ~~--~~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~  362 (450)
                      +.  ..+. .++.. .+.+....+++.++++++.+.|++++. .+..+...                +.+++++|.+++.
T Consensus       236 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~  299 (382)
T 4hvk_A          236 NVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEK----------------RLPNNVNVRFSYI  299 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSS----------------BCTTEEEEEETTC
T ss_pred             CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccc----------------cCCCEEEEEECCC
Confidence            22  2221 12111 133455666778889999999987743 44433211                2345889988743


Q ss_pred             HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHH
Q 013079          363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKA  438 (450)
Q Consensus       363 ~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~a  438 (450)
                      + ...+.+.|...   | +.++.|+.|+......        ......+|.+    ++.||||++ ...+++.++.+.++
T Consensus       300 ~-~~~~~~~l~~~---g-i~v~~g~~~~~~~~~~--------~~~~~~~g~~~~~~~~~iRl~~~-~~~t~e~i~~~~~~  365 (382)
T 4hvk_A          300 E-GESIVLSLDMA---G-IQASTGSACSSKTLQP--------SHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEV  365 (382)
T ss_dssp             C-HHHHHHHHHHT---T-CBCBCC--------CC--------CHHHHHTTCCHHHHHTEEEEECC-TTCCHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHC---C-EEEeeCCccCCCCCcc--------hHHHHHcCCChhhcCCeEEEEcC-CCCCHHHHHHHHHH
Confidence            2 45677777643   3 6788887664322111        1222334443    588999999 75555555555554


Q ss_pred             HHH
Q 013079          439 LSR  441 (450)
Q Consensus       439 l~~  441 (450)
                      |.+
T Consensus       366 l~~  368 (382)
T 4hvk_A          366 LPG  368 (382)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.98  E-value=2.4e-30  Score=255.04  Aligned_cols=279  Identities=15%  Similarity=0.209  Sum_probs=211.1

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ..+...++++.+|++++.  +.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.+++
T Consensus        49 ~~~~~~~l~~~la~~~~~~~~~i~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~  120 (354)
T 3ly1_A           49 AKNEILMLGNKLAAHHQVEAPSILLTAG---SSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAK-----IAGMKVTKVK  120 (354)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEEC
T ss_pred             CCCchHHHHHHHHHHhCCChHHEEEeCC---hHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHH-----HcCCEEEEec
Confidence            456789999999999995  57999999   9999999999999999999999999999987775     3688999998


Q ss_pred             CC-----CHHHHHHhhhc--CCceEEEEecCCCCcccccCHHHHHHHHHh--cCCEEEEeCCCCCCCCCc-----c----
Q 013079          175 IS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHD--KGVTVVVDNTFSPLVLSP-----A----  236 (450)
Q Consensus       175 ~~-----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l~~I~~la~~--~gi~livD~~~~~~~~~~-----~----  236 (450)
                      .+     |+++|++++ +  +++++|++++|+||||.+.|++++.++++.  +|+++|+|++|+.+....     .    
T Consensus       121 ~~~~~~~d~~~l~~~l-~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~  199 (354)
T 3ly1_A          121 MLDNWAFDIEGLKAAV-AAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMIT  199 (354)
T ss_dssp             CCTTSCCCHHHHHHHH-HTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHH
T ss_pred             CCCCCCCCHHHHHHHh-ccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhh
Confidence            77     999999999 6  789999999999999999998888888887  999999999996544321     1    


Q ss_pred             CC-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013079          237 RL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI  315 (450)
Q Consensus       237 ~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~  315 (450)
                      .. +.++++.|+||.+|++|.|+ ||++.++++++.+......   ...+.+.+.++..++...+++..+.+++.+++++
T Consensus       200 ~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  275 (354)
T 3ly1_A          200 QGAENIILLKTFSKIHAMAGMRV-GYAVAHPTVIALMGRYVAG---EKINFSGVDAALASMNDSAFITYSKKSNDVSRQI  275 (354)
T ss_dssp             TTCSSEEEEEESSSTTCCGGGCC-EEEECCHHHHHHHGGGTTC---SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeeChhhccChhhhh-eeeecCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            22 67799999999999899998 9999999998888765541   2222333333333333334456667778889999


Q ss_pred             HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          316 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       316 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      +.+.|++++..+. |                   +.|.++++.++.  ....+.+.|...   | +.++ |+.+.     
T Consensus       276 l~~~l~~~~~~~~-~-------------------~~~~~~~~~~~~--~~~~~~~~l~~~---g-i~v~-g~~~~-----  323 (354)
T 3ly1_A          276 LLKALEDLKLPYL-P-------------------SEGNFVFHQLVV--PLKDYQTHMADA---G-VLIG-RAFPP-----  323 (354)
T ss_dssp             HHHHHHHHTCCBC-C-------------------CCSSEEEEECSS--CHHHHHHHHHHT---T-EECC-CCCTT-----
T ss_pred             HHHHHHHCCCeEC-C-------------------CCceEEEEECCC--CHHHHHHHHHHC---C-EEEe-ecCCC-----
Confidence            9999988765432 2                   245688999985  245666666642   3 5555 53310     


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                        .++.||||++ .   ++.++.+.++|+++
T Consensus       324 ------------------~~~~iRis~~-~---~~~i~~~~~~l~~~  348 (354)
T 3ly1_A          324 ------------------ADNWCRISLG-T---PQEMQWVADTMREF  348 (354)
T ss_dssp             ------------------CTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred             ------------------CCCEEEEEcC-C---HHHHHHHHHHHHHH
Confidence                              2578999999 3   33455555555544

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.97  E-value=3.2e-29  Score=251.08  Aligned_cols=312  Identities=14%  Similarity=0.133  Sum_probs=226.1

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      +++.+.+.. +.+....|.+.....+..+++++.+++++|.+.+++|+|   |++|+.+++++++++||+|+++.|.|++
T Consensus        64 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~g---gt~a~~~~~~~~~~~gd~V~~~~p~~~~  139 (398)
T 3a2b_A           64 KAAQDALEK-YGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFST---GFQSNLGPLSCLMGRNDYILLDERDHAS  139 (398)
T ss_dssp             HHHHHHHHH-HCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHSSCTTCEEEEETTCCHH
T ss_pred             HHHHHHHHH-cCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHHHHHhCCCCEEEECCccCHH
Confidence            555555433 222222344444456789999999999999999999999   9999999999999999999999999999


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC----CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQG----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS  229 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~----~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~  229 (450)
                      +...+.     ..|.++..++..|+++|++++ ++    ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+
T Consensus       140 ~~~~~~-----~~g~~~~~v~~~d~~~l~~~l-~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~  213 (398)
T 3a2b_A          140 IIDGSR-----LSFSKVIKYGHNNMEDLRAKL-SRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHS  213 (398)
T ss_dssp             HHHHHH-----HSSSEEEEECTTCHHHHHHHH-HTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHHHHH-----HcCCceEEeCCCCHHHHHHHH-HhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCc
Confidence            988775     368889999888999999998 44    79999999999999999999999999999999999999995


Q ss_pred             CCCC-----CccCC-----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH-HHHHcc
Q 013079          230 PLVL-----SPARL-----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA-FELSER  298 (450)
Q Consensus       230 ~~~~-----~~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a-~~~~~~  298 (450)
                      .+.+     ...+.     ++|++++|+||+++++|    ||+++++++++.+............+.+.+.++ ..++..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~  289 (398)
T 3a2b_A          214 LGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG----GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEI  289 (398)
T ss_dssp             TTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH
T ss_pred             ccccCCCCCchHhhcCCCcCCeEEEecccccccCCC----cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHH
Confidence            4322     11111     25999999999999765    899999999888876422121122334444322 233333


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079          299 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF  378 (450)
Q Consensus       299 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~  378 (450)
                      .+++....+++.++++++.+.|++++..+..|                    .|.++++.++.......+.+.|...   
T Consensus       290 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~g~~~~~~~~~~~~~~~l~~~l~~~---  346 (398)
T 3a2b_A          290 IQNEPEHIEKLWKNTDYAKAQLLDHGFDLGAT--------------------ESPILPIFIRSNEKTFWVTKMLQDD---  346 (398)
T ss_dssp             HHHCTHHHHHHHHHHHHHHHHHHHTTCCBCSC--------------------CSSEEEEECCCHHHHHHHHHHHHHT---
T ss_pred             HhhCHHHHHHHHHHHHHHHHHHHhcCCCcCCC--------------------CCCEEEEEcCCHHHHHHHHHHHHHC---
Confidence            33334566677889999999999876544322                    2569999998654567787777652   


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      | +.+..|+.+..   +                 ..++.||||++ ...+++.++.+.++|.++.+
T Consensus       347 g-i~v~~~~~~~~---~-----------------~~~~~iRis~~-~~~~~e~i~~~~~~l~~~l~  390 (398)
T 3a2b_A          347 G-VFVNPVVSPAV---P-----------------AEESLIRFSLM-ATHTYDQIDEAIEKMVKVFK  390 (398)
T ss_dssp             T-EECEEECTTTS---C-----------------GGGCEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred             C-cEEEeeCCCCC---C-----------------CCCceEEEEEe-CCCCHHHHHHHHHHHHHHHH
Confidence            3 56665543211   0                 01478999999 75566666666666665543

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=1e-29  Score=251.51  Aligned_cols=279  Identities=16%  Similarity=0.195  Sum_probs=209.3

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .++...++++.+|++++.  +.+++|+|   |++|+++++.+++++||+|+++.|.|+++...+.     ..|.++.+++
T Consensus        65 ~~~~~~~lr~~la~~~~~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~  136 (363)
T 3ffh_A           65 PDGWASSLRKEVADFYQLEEEELIFTAG---VDELIELLTRVLLDTTTNTVMATPTFVQYRQNAL-----IEGAEVREIP  136 (363)
T ss_dssp             ----CHHHHHHHHHHHTCCGGGEEEESS---HHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHH-----HHTCEEEEEE
T ss_pred             CCcchHHHHHHHHHHhCCChhhEEEeCC---HHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHH-----HcCCEEEEec
Confidence            345678999999999985  57999999   9999999999999999999999999999887775     3688888888


Q ss_pred             CC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCCCCCC----Ccc----CCC
Q 013079          175 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFSPLVL----SPA----RLG  239 (450)
Q Consensus       175 ~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~~~~~----~~~----~~g  239 (450)
                      .+     |++++++++ ++++++|++++|+||||.+.|+++|.++++.+  |+++|+|++|+.+..    ...    ..+
T Consensus       137 ~~~~~~~d~~~l~~~i-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  215 (363)
T 3ffh_A          137 LLQDGEHDLEGMLNAI-DEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYK  215 (363)
T ss_dssp             CCTTSCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCT
T ss_pred             CCCCCCcCHHHHHHhc-ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCC
Confidence            76     999999999 88999999999999999999999999999887  999999999964432    111    125


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR  319 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~  319 (450)
                      .++++.|+||.+|++|.|+ |+++.++++++.+......   ...+.+.+.++..++...+++..+.+++.++++++.+.
T Consensus       216 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  291 (363)
T 3ffh_A          216 NLIITRTFSKIYGLASARV-GYGIADKEIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAF  291 (363)
T ss_dssp             TEEEEEESSSTTCCSSCCC-EEEEECHHHHHHHHHTCCS---CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeechhhhcCchhce-eeeecCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            6799999999999999998 9998899999888765541   22333334444444443345666777788999999999


Q ss_pred             HHh-CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccc
Q 013079          320 MKK-LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS  398 (450)
Q Consensus       320 L~~-~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~  398 (450)
                      |++ .+..+. |.                   .|+++++.++.  ....+.+.|...   | +.++.|+.+         
T Consensus       292 l~~~~g~~~~-~~-------------------~~~~~~~~~~~--~~~~~~~~l~~~---g-i~v~~g~~~---------  336 (363)
T 3ffh_A          292 AKRFEKVKLY-PA-------------------NGNFVLIDLGI--EAGTIFSYLEKN---G-YITRSGAAL---------  336 (363)
T ss_dssp             HHHCTTCEEC-CC-------------------CSSEEEEECSS--CHHHHHHHHHHT---T-EECEETTTT---------
T ss_pred             HhhCCCceEC-CC-------------------CCeEEEEECCC--CHHHHHHHHHHC---C-eEEEeCccC---------
Confidence            998 455543 22                   35688999974  245666666642   3 566655331         


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       399 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                   +. ++.||||++ .   ++.++.+.++|++
T Consensus       337 -------------~~-~~~iRis~~-~---~~~i~~~~~~l~~  361 (363)
T 3ffh_A          337 -------------GF-PTAVRITIG-K---EEDNSAVIALLEK  361 (363)
T ss_dssp             -------------TC-TTEEEEECC-C---HHHHHHHHHHHHH
T ss_pred             -------------CC-CCeEEEECC-C---HHHHHHHHHHHHH
Confidence                         11 478999999 3   3344555555543

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.97  E-value=3.2e-30  Score=255.29  Aligned_cols=274  Identities=14%  Similarity=0.198  Sum_probs=210.2

Q ss_pred             HHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----
Q 013079          102 LNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----  175 (450)
Q Consensus       102 ~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----  175 (450)
                      .++++.||+++|.  +.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.+++.    
T Consensus        68 ~~lr~~la~~~~~~~~~v~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~  139 (365)
T 3get_A           68 IELKSTLAQKYKVQNENIIIGAG---SDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAK-----QCGAKCYKTQSITHN  139 (365)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----HHTCEEEECSSSSCC
T ss_pred             HHHHHHHHHHhCCCcceEEECCC---HHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEEecCCCC
Confidence            6899999999994  57999999   9999999999999999999999999999988775     36888988886    


Q ss_pred             -CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHH--hcCCEEEEeCCCCCCC--------CCccC----CCC
Q 013079          176 -SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTFSPLV--------LSPAR----LGA  240 (450)
Q Consensus       176 -~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~--~~gi~livD~~~~~~~--------~~~~~----~g~  240 (450)
                       .|++++++++ ++++++|++++|+||||.+.|+++|.++++  ++|+++|+|++|..+.        .+...    .+.
T Consensus       140 ~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (365)
T 3get_A          140 LDEFKKLYETH-KDEIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDN  218 (365)
T ss_dssp             HHHHHHHHHHT-TTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTT
T ss_pred             CCCHHHHHHHh-CCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCC
Confidence             3688999999 789999999999999999999998888888  6799999999985332        12221    267


Q ss_pred             eEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013079          241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM  320 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L  320 (450)
                      ++++.|+||.+|++|.|+ ||++.++++++.+......   ...+.+.+.++..++...+++..+.+++.++++++.+.|
T Consensus       219 ~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  294 (365)
T 3get_A          219 VLYLGTFSKLYGLGGLRI-GYGIANANIISAFYKLRAP---FNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFA  294 (365)
T ss_dssp             EEEEEESSSTTSCTTTCC-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecchHhcCcchhe-EEEEcCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999998 9998899999988776552   223334444444444443456667777889999999999


Q ss_pred             HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccC
Q 013079          321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS  400 (450)
Q Consensus       321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~  400 (450)
                      ++++..+. |.                   .|+++++.++.. ....+.+.|...   | +.++.|+.+           
T Consensus       295 ~~~g~~~~-~~-------------------~~~~~~~~~~~~-~~~~~~~~l~~~---g-i~v~~g~~~-----------  338 (365)
T 3get_A          295 KKHNIKII-DS-------------------YTNFITYFFDEK-NSTDLSEKLLKK---G-IIIRNLKSY-----------  338 (365)
T ss_dssp             HHTTCEEC-CC-------------------SSSEEEEECSSS-CHHHHHHHHHTT---T-EECEECGGG-----------
T ss_pred             HhCCCEEC-CC-------------------CCeEEEEECCCC-CHHHHHHHHHHC---C-EEEEECccC-----------
Confidence            98866543 22                   356889999743 356777777653   3 566666432           


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       401 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                 +  ++.||||++ .   ++.++.+.++|.+
T Consensus       339 -----------~--~~~iRis~~-~---~~~i~~l~~~l~~  362 (365)
T 3get_A          339 -----------G--LNAIRITIG-T---SYENEKFFTEFDK  362 (365)
T ss_dssp             -----------T--CSEEEEECC-C---HHHHHHHHHHHHH
T ss_pred             -----------C--CCEEEEEcC-C---HHHHHHHHHHHHH
Confidence                       2  478999999 3   3344555555544

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.97  E-value=2.5e-30  Score=257.06  Aligned_cols=331  Identities=15%  Similarity=0.141  Sum_probs=224.1

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc----cCCCEEEE
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC----SSGGHVVA  146 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~----~~gd~Vi~  146 (450)
                      .+++.+.+...++||.+.|.+++...+...++++.+|+++|.+  .+++|+|   |++|+++++.++.    ++||+|++
T Consensus        18 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~gd~vl~   94 (384)
T 1eg5_A           18 LEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSC---ATESINWILKTVAETFEKRKRTIIT   94 (384)
T ss_dssp             HHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESC---HHHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred             HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECC---HHHHHHHHHHhhhhhccCCCCEEEE
Confidence            3777777777778887666666655677899999999999965  7999999   9999999999987    78999999


Q ss_pred             eCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC--
Q 013079          147 ARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG--  219 (450)
Q Consensus       147 ~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g--  219 (450)
                      +.++|+++...+..+ . ..|.++.+++.+     |+++|++++ ++++++|++++|+||||.+.|+++|.++|+++|  
T Consensus        95 ~~~~~~~~~~~~~~~-~-~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~  171 (384)
T 1eg5_A           95 TPIEHKAVLETMKYL-S-MKGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKE  171 (384)
T ss_dssp             CTTSCHHHHHHHHHH-H-HTTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTT
T ss_pred             CCCCchHHHHHHHHH-H-hcCCEEEEEccCCCCccCHHHHHHHh-CCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCc
Confidence            999999987766321 1 258888888763     899999999 778999999999999999999999999999999  


Q ss_pred             CEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH--HHHHHHHhhhhhhccC--CCchHHHHH
Q 013079          220 VTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL--VNSMMDLHQGALMLLG--PTMNPKVAF  293 (450)
Q Consensus       220 i~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~--~~~l~~~~~~~~~~~g--~~~~~~~a~  293 (450)
                      +++|+|++|+  ....+...+++|+++.|+||++|++|  + |+++.++++  ...+...........+  +.+.+.++.
T Consensus       172 ~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  248 (384)
T 1eg5_A          172 TLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKG--V-GITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAA  248 (384)
T ss_dssp             CEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTT--C-EEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHH
T ss_pred             eEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCc--e-EEEEEcCCCccccccccCcccccccCCCCChHHHHHHH
Confidence            9999999973  22233334578999999999999877  5 899888765  2111110000000112  222222222


Q ss_pred             HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh
Q 013079          294 ELSER-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL  372 (450)
Q Consensus       294 ~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l  372 (450)
                      .++.. .+.+....+++.++++++.+.|++.+.++..|...                +.+.+++|.+++.+ ...+.+.|
T Consensus       249 ~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~l  311 (384)
T 1eg5_A          249 RAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI----------------SLPNTLSVSFPNIR-GSTLQNLL  311 (384)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS----------------BCTTEEEEECTTCC-HHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCccc----------------CCCCEEEEEeCCCC-HHHHHHHH
Confidence            33322 23456667778889999999998865555433200                23558888887432 45677777


Q ss_pred             hccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          373 QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       373 ~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ..   .| +.+..|..|......        +......+|.+    .+.||||++ ...+++.++.+.++|.++
T Consensus       312 ~~---~g-i~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~  372 (384)
T 1eg5_A          312 SG---YG-IYVSTSSACTSKDER--------LRHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFLKKIEEI  372 (384)
T ss_dssp             HH---TT-EECBC--------------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred             hh---CC-eEEeccccccCCCCc--------chHHHHHcCCChhhcCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence            54   33 677766554321100        01122334443    478999999 655555555555555443

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=1.2e-30  Score=262.05  Aligned_cols=322  Identities=16%  Similarity=0.126  Sum_probs=229.1

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh---ccCCCEEEEe
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL---CSSGGHVVAA  147 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l---~~~gd~Vi~~  147 (450)
                      .+++.+.+...++||++.|.|++...+..+++++.+|+++|.+  .+++|+|   +++++++++.++   +++||+|+++
T Consensus        43 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~al~~~~~~l~~~~~~gd~vi~~  119 (406)
T 3cai_A           43 ATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGAD---RAVLLSLLAEASSSRAGLGYEVIVS  119 (406)
T ss_dssp             HHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESC---HHHHHHHHHHHTGGGGBTTCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCC---hHHHHHHHHHHHhhccCCCCEEEEc
Confidence            3777777766667777777777666788999999999999975  6899999   999999999887   7889999999


Q ss_pred             CCCchhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCE
Q 013079          148 RTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVT  221 (450)
Q Consensus       148 ~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~  221 (450)
                      .++|+++...+..+..+ .|.++.+++.+      |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|++
T Consensus       120 ~~~~~~~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~  197 (406)
T 3cai_A          120 RLDDEANIAPWLRAAHR-YGAKVKWAEVDIETGELPTWQWESLI-SKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGAL  197 (406)
T ss_dssp             TTSCGGGTHHHHHHHHH-HBCEEEEECCCTTTCCCCGGGHHHHC-CTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCE
T ss_pred             CCccHHHHHHHHHHHHh-cCCeEEEEecCcccCCcCHHHHHHHh-CCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCE
Confidence            99999877665432222 58888888875      889999999 78899999999999999999999999999999999


Q ss_pred             EEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEE-EEEcCHHHHHHHHHHhhh------hhhccCCC-chHH-
Q 013079          222 VVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAG-AVCGPANLVNSMMDLHQG------ALMLLGPT-MNPK-  290 (450)
Q Consensus       222 livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG-~l~~~~~~~~~l~~~~~~------~~~~~g~~-~~~~-  290 (450)
                      +|+|++|+  ....+...+++|+++.|+||++| ++  + | +++.++++++.+......      .....+.. .... 
T Consensus       198 li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~--~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~  273 (406)
T 3cai_A          198 VVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PP--I-GAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLA  273 (406)
T ss_dssp             EEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTS-CS--C-EEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHH
T ss_pred             EEEEcccccCCCCCCchhcCCCEEEeehhhhcC-CC--c-CeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHH
Confidence            99999993  22234344589999999999887 44  5 6 999998877665432210      00012221 1111 


Q ss_pred             HHHHHHccCC----------------cHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          291 VAFELSERIP----------------HLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       291 ~a~~~~~~~~----------------~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      ++..++....                ++....++..++++++.+.|++++. .+..|..                 ..++
T Consensus       274 a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----------------~~~~  336 (406)
T 3cai_A          274 GVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPE-----------------AQIP  336 (406)
T ss_dssp             HHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCS-----------------SBCS
T ss_pred             HHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCcc-----------------ccCC
Confidence            1111222111                2455566678889999999988743 4433320                 2355


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC--CCeEEEEeCCCCCHHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS--AGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~--~~~iRiS~g~~~~~~~~  431 (450)
                      +++|.+++.+ ...+.+.|...   | +.++.|+...                ....+|.+  .+.||||++ ..++++.
T Consensus       337 ~~~~~~~~~~-~~~~~~~L~~~---g-i~v~~g~~~~----------------~~~~~g~~~~~~~iRis~~-~~~t~e~  394 (406)
T 3cai_A          337 VVSFAVHKVP-ADRVVQRLADN---G-ILAIANTGSR----------------VLDVLGVNDVGGAVTVGLA-HYSTMAE  394 (406)
T ss_dssp             EEEEEETTBC-HHHHHHHHHHT---T-EECEECCSCH----------------HHHHHTTTTTTCCEEEECC-TTCCHHH
T ss_pred             EEEEEECCcC-HHHHHHHHHHC---C-cEEecCChHH----------------HHHHcCCCCCCCeEEEEee-cCCCHHH
Confidence            8999987422 45666666542   3 5666664110                11123332  478999999 8888888


Q ss_pred             HHHHHHHHHHh
Q 013079          432 WSQFEKALSRM  442 (450)
Q Consensus       432 i~~l~~al~~~  442 (450)
                      ++.+.++|+++
T Consensus       395 i~~~~~~l~~~  405 (406)
T 3cai_A          395 VDQLVRALASL  405 (406)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            88888888754

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.97  E-value=2e-30  Score=261.78  Aligned_cols=327  Identities=17%  Similarity=0.182  Sum_probs=227.2

Q ss_pred             HHHHHhhc--CCCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhcc----CCCEE
Q 013079           74 ETMRRMFA--GELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCS----SGGHV  144 (450)
Q Consensus        74 ~~~~~~~~--~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~----~gd~V  144 (450)
                      +++.+.+.  ..++||.+ .|.+++...+..+++++.++++++.+  .+++|+|   |++|+.++++++.+    +||+|
T Consensus        40 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---gt~a~~~a~~~l~~~~~~~gd~V  116 (423)
T 3lvm_A           40 EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG---ATESDNLAIKGAANFYQKKGKHI  116 (423)
T ss_dssp             HHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS---HHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             HHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC---hHHHHHHHHHHHHHhhccCCCEE
Confidence            66666666  66788877 67777777788899999999999986  7999999   99999999998874    79999


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG  219 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g  219 (450)
                      +++.++|+++...+... .. .|.++.+++.+     |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|
T Consensus       117 l~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~  193 (423)
T 3lvm_A          117 ITSKTEHKAVLDTCRQL-ER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG  193 (423)
T ss_dssp             EEETTSCHHHHHHHHHH-HH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHT
T ss_pred             EECCccchHHHHHHHHH-HH-cCCEEEEeccCCCCccCHHHHHHhc-CCCcEEEEEeCCCCCCccccCHHHHHHHHHHcC
Confidence            99999999988776433 22 58899998876     899999999 789999999999999999999999999999999


Q ss_pred             CEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh----hhccCC-CchHHHH
Q 013079          220 VTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLLGP-TMNPKVA  292 (450)
Q Consensus       220 i~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~g~-~~~~~~a  292 (450)
                      +++|+|++|+  ....+....++|+++.|+||.+|++|  + |+++.+++....+.....+.    ....+. ......+
T Consensus       194 ~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  270 (423)
T 3lvm_A          194 IIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG--I-GALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVG  270 (423)
T ss_dssp             CEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSS--C-EEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHH
T ss_pred             CEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCC--e-EEEEEeccccCCCCccccCCcccccccCCCCCHHHHHH
Confidence            9999999983  23345556689999999999988777  5 88887766554433221100    001121 1222222


Q ss_pred             H-HHHccC-CcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHH
Q 013079          293 F-ELSERI-PHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLM  369 (450)
Q Consensus       293 ~-~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~  369 (450)
                      . .++... ..+....+++.++++++.+.|++++ ..+..+...                ..+++++|.+++.. ...+.
T Consensus       271 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-~~~l~  333 (423)
T 3lvm_A          271 MGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH----------------GAPNILNVSFNYVE-GESLI  333 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT----------------BCTTEEEEEETTSC-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc----------------cCCCeEEEEeCCCC-HHHHH
Confidence            1 222211 2245566677888999999998874 355433211                23568888886433 45677


Q ss_pred             HHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          370 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       370 ~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      +.|..      +.++.|..|+.....        +......+|+.    .+.||||++ ...+++.++.+.++|++
T Consensus       334 ~~l~~------i~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~  394 (423)
T 3lvm_A          334 MALKD------LAVSSGSACTSASLE--------PSYVLRALGLNDELAHSSIRFSLG-RFTTEEEIDYTIELVRK  394 (423)
T ss_dssp             HHTTT------EECBCCCC-----CC--------CCHHHHHHTCCHHHHHTEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred             HHHhh------heeccCccccCCCcc--------ccHHHHHhCCCccccCceEEEECC-CCCCHHHHHHHHHHHHH
Confidence            76654      567777665432111        11223334544    488999999 75555555555444443

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.97  E-value=1.7e-29  Score=252.29  Aligned_cols=266  Identities=23%  Similarity=0.288  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..++++.+|+++    |    .+++++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++..
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~  141 (385)
T 1b5p_A           70 IPELREALAEKFRRENGLSVTPEETIVTVG---GSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVE  141 (385)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHHEEEcCC---hHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEEE
Confidence            456777777765    3    357999999   9999999999999999999999999999888775     36778877


Q ss_pred             eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC
Q 013079          173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR  237 (450)
Q Consensus       173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~~  237 (450)
                      ++.+       |+++|++++ ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|+.+.+     +...
T Consensus       142 v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  220 (385)
T 1b5p_A          142 VETLPEEGFVPDPERVRRAI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR  220 (385)
T ss_dssp             EECCGGGTTCCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG
T ss_pred             eecCcccCCCCCHHHHHHhc-CCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHH
Confidence            7752       789999998 778999999999999999976   88999999999999999999965543     2223


Q ss_pred             C--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc----CCcHHHHHHHHHH
Q 013079          238 L--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER----IPHLGLRMKEHCH  311 (450)
Q Consensus       238 ~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~----~~~l~~~~~~~~~  311 (450)
                      +  +.++++.|+||.+|++|+|+ ||++.++++++.+...+... ....+.+.+.++..++..    .+++....+++.+
T Consensus       221 ~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  298 (385)
T 1b5p_A          221 VAPEHTLTVNGAAKAFAMTGWRI-GYACGPKEVIKAMASVSRQS-TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRR  298 (385)
T ss_dssp             TCTTTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEechhhcCCcccce-EEEEeCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            3  67899999999999999998 99999999988887655421 122333344444334422    3345556677788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      +++.+.+.|++++..+..|.                   .|.++++.++. ......+.+.|..   .| +.+..|+.+ 
T Consensus       299 ~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~---~g-v~v~~g~~f-  354 (385)
T 1b5p_A          299 RRDLLLEGLTALGLKAVRPS-------------------GAFYVLMDTSPIAPDEVRAAERLLE---AG-VAVVPGTDF-  354 (385)
T ss_dssp             HHHHHHHHHHHHTCCBCCCS-------------------BTTEEEEECTTTCSSHHHHHHHHHH---TT-EECEESGGG-
T ss_pred             HHHHHHHHHHHCCCeecCCC-------------------eeEEEEEecCCCCCCHHHHHHHHHH---CC-eEEeccccc-
Confidence            89999999988755543332                   34577778751 1124566666653   23 566656432 


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVG  423 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g  423 (450)
                                           +. ++.||||++
T Consensus       355 ---------------------~~-~~~iRis~~  365 (385)
T 1b5p_A          355 ---------------------AA-FGHVRLSYA  365 (385)
T ss_dssp             ---------------------TC-TTEEEEECC
T ss_pred             ---------------------CC-CCeEEEEec
Confidence                                 11 468999999

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.97  E-value=1.6e-29  Score=252.25  Aligned_cols=294  Identities=15%  Similarity=0.103  Sum_probs=211.9

Q ss_pred             ccccCCCChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCcc
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC  166 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~  166 (450)
                      +.|+....+..+++++.+++.+|    .+.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..
T Consensus        58 ~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~  129 (391)
T 3dzz_A           58 FGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASG---VVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIE-----GN  129 (391)
T ss_dssp             CCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESC---HHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHH-----HT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCC---HHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHH-----Hc
Confidence            45665555667788888888776    467999999   9999999999999999999999999999988775     36


Q ss_pred             CeeEEEeCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccc---cCHHHHHHHHHhcCCEEEEeCCCCCCCC--
Q 013079          167 NITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVL--  233 (450)
Q Consensus       167 g~~v~~v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~~--  233 (450)
                      |.++.+++.        .|+++|++++.++++++|++++|+||||.+   .++++|+++|+++|+++|+|++|+.+..  
T Consensus       130 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g  209 (391)
T 3dzz_A          130 GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTD  209 (391)
T ss_dssp             TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS
T ss_pred             CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCC
Confidence            788888776        489999999933789999999999999999   6789999999999999999999954432  


Q ss_pred             ----CccCCC---Ce--EEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcH
Q 013079          234 ----SPARLG---AD--VVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHL  302 (450)
Q Consensus       234 ----~~~~~g---~d--i~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l  302 (450)
                          +...++   .|  +++.|+||.+|++|.|+ |+++.+ +++++.+...........++.+.+.++..++... +++
T Consensus       210 ~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~  288 (391)
T 3dzz_A          210 EDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA-ACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWL  288 (391)
T ss_dssp             CCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC-EEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHH
T ss_pred             CCceehhhcCccccCcEEEEEeChhhccccchhh-eEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHH
Confidence                122222   34  99999999999899998 999887 8888888766442222344455555544444332 335


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-ccccc
Q 013079          303 GLRMKEHCHRALIFARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQF  378 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~-~~~~~  378 (450)
                      ....+++.++++++.+.|++ + +..+..|.                   .+.++++.++.. .....+.+.|. ..   
T Consensus       289 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~---  346 (391)
T 3dzz_A          289 RELKQVLRDNFAYAREFLAKEVPEVKVLDSN-------------------ASYLAWVDISALGMNAEDFCKYLREKT---  346 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTSEECCCC-------------------BSSEEEEECGGGCSCHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCcEEeccC-------------------ceEEEEEehhhcCCCHHHHHHHHHHhC---
Confidence            56667778899999999988 5 44544332                   345677888631 23556777763 32   


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      | +.++.|+.+..                     ..++.||||++ .  +++.++.+.+.|.
T Consensus       347 g-i~v~~g~~~~~---------------------~~~~~iRis~~-~--~~~~i~~~l~~l~  383 (391)
T 3dzz_A          347 G-LIISAGNGYRG---------------------NGHEFVRINLA-C--PKELVIDGMQRLK  383 (391)
T ss_dssp             C-EECEESGGGCT---------------------TGGGEEEEECC-S--CHHHHHHHHHHHH
T ss_pred             C-EEEeCchhhCC---------------------CCCCEEEEEec-C--CHHHHHHHHHHHH
Confidence            3 56666654321                     01478999999 5  2333444333333

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.97  E-value=3.8e-30  Score=255.75  Aligned_cols=338  Identities=12%  Similarity=0.112  Sum_probs=226.9

Q ss_pred             ccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc----c
Q 013079           67 TFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC----S  139 (450)
Q Consensus        67 t~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~----~  139 (450)
                      +++.+. .+++.+.+...++||.+.|.+++...+..+++++.+|+++|.+  .+++|+|   |++|+++++.++.    +
T Consensus        10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~a~~~~~~~l~~~~~~   86 (382)
T 4eb5_A           10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSG---ATEANNLAIIGYAMRNAR   86 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESS---HHHHHHHHHHHHHHHHGG
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCc---hHHHHHHHHHHHHhhccC
Confidence            333344 3777777777678877666666556678899999999999975  6899999   9999999999987    8


Q ss_pred             CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHH
Q 013079          140 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL  214 (450)
Q Consensus       140 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~l  214 (450)
                      +||+|++++++|+++...+.. +.. .|.++++++.+     |+++|++++ ++++++|++++++||||.+.|+++|.++
T Consensus        87 ~gd~Vl~~~~~~~~~~~~~~~-~~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l  163 (382)
T 4eb5_A           87 KGKHILVSAVEHMSVINPAKF-LQK-QGFEVEYIPVGKYGEVDVSFIDQKL-RDDTILVSVQHANNEIGTIQPVEEISEV  163 (382)
T ss_dssp             GCCEEEEETTCCHHHHHHHHH-HTT-TTCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEECCSBCTTTCBBCCHHHHHHH
T ss_pred             CCCEEEECCCcchHHHHHHHH-HHh-CCcEEEEeccCCCCccCHHHHHHHh-cCCCeEEEEeccCCCccccCCHHHHHHH
Confidence            999999999999998877642 233 68899888863     899999999 7789999999999999999999999999


Q ss_pred             HHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HHHHHHH-hhhhhhccCCCc-hH
Q 013079          215 AHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDL-HQGALMLLGPTM-NP  289 (450)
Q Consensus       215 a~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~-~~~~~~~~g~~~-~~  289 (450)
                      |+++|++ |+|++|+  ....+...+++|+++.|+||++|++|  + |+++.+++. +...... ........+... ..
T Consensus       164 ~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g--~-G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  239 (382)
T 4eb5_A          164 LAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKG--V-GALWIRKEAKLQPVILGGGQENGLRSGSENVPS  239 (382)
T ss_dssp             HTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSS--C-EEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHH
T ss_pred             HHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCc--e-EEEEEccccccCceecCCCccccccCCCccHHH
Confidence            9999999 9999984  22222223478999999999988766  5 777665542 1111000 000001122211 12


Q ss_pred             HHH-HHHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHH
Q 013079          290 KVA-FELSER-IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN  366 (450)
Q Consensus       290 ~~a-~~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~  366 (450)
                      ..+ ..++.. .+.+....+++.++++++.+.|++++ ..+..|.  .              ...+++++|.+++. ...
T Consensus       240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~-~~~  302 (382)
T 4eb5_A          240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHP--E--------------KRLPNNVNVRFSYI-EGE  302 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCS--S--------------SBCTTEEEEEETTS-CHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCc--c--------------cCCCCEEEEEeCCc-CHH
Confidence            111 122221 12345566677888999999998864 3443221  0              01356889998742 245


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHH----HHHHHHHH
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQ----RWSQFEKA  438 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~----~i~~l~~a  438 (450)
                      .+.+.|...   | +.++.|..|+.....        ++.....+|.+    ++.||||++ ...+++    +++.|.++
T Consensus       303 ~~~~~l~~~---g-i~v~~g~~~~~~~~~--------~~~~~~~~g~~~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~  369 (382)
T 4eb5_A          303 SIVLSLDMA---G-IQASTGSACSSKTLQ--------PSHVLMACGLKHEEAHGTLLLTLG-RYNTDEDVDRLLEVLPGV  369 (382)
T ss_dssp             HHHHHHHHH---T-CBCBCCCGGGTSSCC--------CCHHHHHTTCCHHHHTTEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC---C-EEEeccccccCCCCc--------ccHHHHHcCCChhccCCeEEEECC-CCCCHHHHHHHHHHHHHH
Confidence            677776542   3 677777665432111        11233334543    579999999 654444    44555555


Q ss_pred             HHHhhh
Q 013079          439 LSRMQD  444 (450)
Q Consensus       439 l~~~~~  444 (450)
                      ++++++
T Consensus       370 ~~~~~~  375 (382)
T 4eb5_A          370 IERLRS  375 (382)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.97  E-value=5.1e-30  Score=256.81  Aligned_cols=324  Identities=15%  Similarity=0.208  Sum_probs=227.0

Q ss_pred             HHHHHHhhcCCCCCCCC-CccccCCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh----ccCCCEE
Q 013079           73 PETMRRMFAGELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL----CSSGGHV  144 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l----~~~gd~V  144 (450)
                      .+++.+.+...++||.. .|.++....+...++++.||++++.   +.+++|+|   |++|+++++.++    +++||+|
T Consensus        40 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~gd~v  116 (406)
T 1kmj_A           40 IDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRG---TTEGINLVANSWGNSNVRAGDNI  116 (406)
T ss_dssp             HHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESS---HHHHHHHHHHHTHHHHCCTTCEE
T ss_pred             HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCC---hhHHHHHHHHHhhhhcCCCCCEE
Confidence            36677777665566653 3455444567789999999999997   57899999   999999999998    8899999


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG  219 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g  219 (450)
                      +++.++|++....+...... .|.++.+++.+     |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|
T Consensus       117 l~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~  194 (406)
T 1kmj_A          117 IISQMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHVSNVLGTENPLAEMITLAHQHG  194 (406)
T ss_dssp             EEETTCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTT
T ss_pred             EEecccchHHHHHHHHHHHh-CCCEEEEEecCCCCCcCHHHHHHHh-ccCCeEEEEeCCCccccCcCCHHHHHHHHHHcC
Confidence            99999998865443222222 58888888764     789999999 788999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh-----------------
Q 013079          220 VTVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL-----------------  280 (450)
Q Consensus       220 i~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~-----------------  280 (450)
                      +++|+|++|+..  ..+....++|+++.|+||.+|++|  + |+++.++++++.+.....++.                 
T Consensus       195 ~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (406)
T 1kmj_A          195 AKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAP  271 (406)
T ss_dssp             CEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTT
T ss_pred             CEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCC--c-EEEEEeHHHHhhcCCcccCCCceeecccccccccCCCc
Confidence            999999999432  223233479999999999998877  5 999999888877653322110                 


Q ss_pred             --hccC-CCchHHHHH-HHHccCC--cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          281 --MLLG-PTMNPKVAF-ELSERIP--HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       281 --~~~g-~~~~~~~a~-~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                        ...+ +.+.+.++. .++..+.  .+....+++.++++++.+.|++++ .++..|.                  +.|+
T Consensus       272 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~  333 (406)
T 1kmj_A          272 WRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ------------------NRLG  333 (406)
T ss_dssp             GGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT------------------TCCS
T ss_pred             hhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------------CcCC
Confidence              0112 222222222 1222221  344556667888899999998873 4554331                  1356


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      ++.|.+++.+ ...+.+.|...   | +.+..|..|+.              ......|. ++.||||++ ..++++.++
T Consensus       334 ~~~~~~~~~~-~~~~~~~l~~~---g-i~v~~g~~~~~--------------~~~~~~g~-~~~iRis~~-~~~t~~~i~  392 (406)
T 1kmj_A          334 VIAFNLGKHH-AYDVGSFLDNY---G-IAVRTGHHCAM--------------PLMAYYNV-PAMCRASLA-MYNTHEEVD  392 (406)
T ss_dssp             EEEEEETTCC-HHHHHHHHHHT---T-EECEEECTTCH--------------HHHHHTTC-SCEEEEECC-TTCCHHHHH
T ss_pred             EEEEEECCCC-HHHHHHHHhhC---C-cEEEeccccch--------------HHHHhcCC-CCeEEEEee-cCCCHHHHH
Confidence            8888887322 34566666542   3 56666654321              01111232 478999999 877777778


Q ss_pred             HHHHHHHHhh
Q 013079          434 QFEKALSRMQ  443 (450)
Q Consensus       434 ~l~~al~~~~  443 (450)
                      .+.++|.++.
T Consensus       393 ~~~~~l~~~~  402 (406)
T 1kmj_A          393 RLVTGLQRIH  402 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777777654

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.97  E-value=5.5e-30  Score=257.86  Aligned_cols=326  Identities=17%  Similarity=0.186  Sum_probs=225.7

Q ss_pred             HHHHHhhcCCCCCCC-CCccccCCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh----ccCCCEEE
Q 013079           74 ETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL----CSSGGHVV  145 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~-~~~~y~r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l----~~~gd~Vi  145 (450)
                      +++.+.+....+||. +.+.|+....+..+++++.||++++.   +.+++|+|   |++|+++++.++    +++||+|+
T Consensus        46 ~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~gd~Vl  122 (420)
T 1t3i_A           46 EKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRN---ATEAINLVAYSWGMNNLKAGDEII  122 (420)
T ss_dssp             HHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESS---HHHHHHHHHHHTHHHHCCTTCEEE
T ss_pred             HHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCC---hHHHHHHHHHHhhhcccCCCCEEE
Confidence            667666666556665 34667654456789999999999998   67999999   999999999998    88999999


Q ss_pred             EeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079          146 AARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV  220 (450)
Q Consensus       146 ~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi  220 (450)
                      ++.++|++....+..... ..|.++.+++.+     |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|+
T Consensus       123 ~~~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~  200 (420)
T 1t3i_A          123 TTVMEHHSNLVPWQMVAA-KTGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGA  200 (420)
T ss_dssp             EETTCCGGGTHHHHHHHH-HHCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTC
T ss_pred             ECcchhHHHHHHHHHHHH-hcCcEEEEeccCCCCCcCHHHHHHhh-CCCceEEEEeCCcccccCcCCHHHHHHHHHHcCC
Confidence            999999995332221111 257888888763     899999999 7889999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC--CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh------------------
Q 013079          221 TVVVDNTFSPL--VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL------------------  280 (450)
Q Consensus       221 ~livD~~~~~~--~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~------------------  280 (450)
                      ++|+|++|+..  ..+...+++|+++.|+||.+|++|  + |+++.++++++.+.....++.                  
T Consensus       201 ~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (420)
T 1t3i_A          201 KVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG--I-GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHK  277 (420)
T ss_dssp             EEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGG
T ss_pred             EEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCc--e-EEEEEchHHHhhcCceecCCCccccccccccCCCCchhh
Confidence            99999998432  223344579999999999998877  5 999999888877654332110                  


Q ss_pred             hccC-CCchHHHHHH-HHccCC--cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          281 MLLG-PTMNPKVAFE-LSERIP--HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       281 ~~~g-~~~~~~~a~~-~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                      ...+ +...+..+.. ++..+.  .+....+++.++++++.+.|+++ +.++..|....              .+.|+++
T Consensus       278 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--------------~~~~~~~  343 (420)
T 1t3i_A          278 FEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH--------------GDRAALA  343 (420)
T ss_dssp             GCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG--------------SCBCSEE
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccc--------------cccCCEE
Confidence            0112 2222222221 222221  24556667788899999999987 44554442000              0246789


Q ss_pred             EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 013079          356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQF  435 (450)
Q Consensus       356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l  435 (450)
                      +|.+++. ....+.+.|...   | +.+..|..|..              ......|. ++.||||++ ...+++.++.+
T Consensus       344 ~~~~~~~-~~~~~~~~l~~~---g-i~v~~~~~~~~--------------~~~~~~g~-~~~iRis~~-~~~~~~~i~~~  402 (420)
T 1t3i_A          344 SFNVAGL-HASDVATMVDQD---G-IAIRSGHHCTQ--------------PLHRLFDA-SGSARASLY-FYNTKEEIDLF  402 (420)
T ss_dssp             EEEETTB-CHHHHHHHHHTT---T-EECBCSCTTCH--------------HHHHHTTC-CCCEEEECC-TTCCHHHHHHH
T ss_pred             EEEECCC-CHHHHHHHHHHC---C-eEEeeccccch--------------HHHHhcCC-CCeEEEecC-CCCCHHHHHHH
Confidence            9998742 245566666642   3 56666644321              00111222 578999999 76666666666


Q ss_pred             HHHHHHh
Q 013079          436 EKALSRM  442 (450)
Q Consensus       436 ~~al~~~  442 (450)
                      .++|.++
T Consensus       403 ~~~l~~~  409 (420)
T 1t3i_A          403 LQSLQAT  409 (420)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665544

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.97  E-value=2.4e-29  Score=248.79  Aligned_cols=284  Identities=14%  Similarity=0.136  Sum_probs=209.2

Q ss_pred             CChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ..+...+++++||+++|  .+.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.+++
T Consensus        63 ~~~~~~~lr~~la~~~g~~~~~i~~t~g---~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v~  134 (360)
T 3hdo_A           63 PSASSQKLREVAGELYGFDPSWIIMANG---SDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAE-----VQGARVRTFG  134 (360)
T ss_dssp             CCSSCHHHHHHHHHHHTCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHH-----HHTCEEEEEC
T ss_pred             CCCchHHHHHHHHHHhCcCcceEEEcCC---HHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHH-----HCCCEEEEee
Confidence            33445799999999998  467999999   9999999999999999999999999999987775     3688888887


Q ss_pred             CCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-cc----CCCCeEEEeCCCC
Q 013079          175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-PA----RLGADVVVHSISK  249 (450)
Q Consensus       175 ~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-~~----~~g~di~~~S~sK  249 (450)
                      .++...+++..+..++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... +.    ..+.++++.|+||
T Consensus       135 ~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK  214 (360)
T 3hdo_A          135 LTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSK  214 (360)
T ss_dssp             BCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTT
T ss_pred             CCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchH
Confidence            653212222221135779999999999999999999999999999999999999654321 11    2267799999999


Q ss_pred             ccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013079          250 FISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY  329 (450)
Q Consensus       250 ~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~  329 (450)
                      .+|++|.|+ ||++.++++++.+......   ...+.+.+.++..++...+++.++.+++.++++++.+.|++++..+. 
T Consensus       215 ~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-  289 (360)
T 3hdo_A          215 SYSLAGMRI-GLAIARPEVIAALDKIRDH---YNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSIGYDVI-  289 (360)
T ss_dssp             TTSCTTSCC-EEEECCHHHHHHHHHHSCS---CCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEC-
T ss_pred             hhcCCccce-eeEeeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEc-
Confidence            999999998 9999999999988776541   22333344444444444344666777788999999999998866543 


Q ss_pred             CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHH
Q 013079          330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA  409 (450)
Q Consensus       330 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~  409 (450)
                      +.                   .|+++++.+++.+ ...+.+.|...   | +.++.|+.      +              
T Consensus       290 ~~-------------------~~~~~~~~~~~~~-~~~l~~~l~~~---g-i~v~~~~~------~--------------  325 (360)
T 3hdo_A          290 PS-------------------QGNYLFATPPDRD-GKRVYDGLYAR---K-VLVRHFSD------P--------------  325 (360)
T ss_dssp             CC-------------------SSSEEEEECTTCC-HHHHHHHHHHT---T-EECBCCCS------T--------------
T ss_pred             CC-------------------CccEEEEECCCCC-HHHHHHHHHHC---C-EEEEECCC------C--------------
Confidence            22                   4568888887432 45666776642   3 45554422      0              


Q ss_pred             hcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          410 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       410 ~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                         ..++.||||++    +++.++.|.++|.++.+
T Consensus       326 ---~~~~~iRis~~----~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          326 ---LLAHGMRISIG----TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             ---TTTTSEEEECC----CHHHHHHHHHHHHHHHC
T ss_pred             ---CCCCEEEEEcC----CHHHHHHHHHHHHHHhc
Confidence               01478999999    35567777778777653

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.97  E-value=1.2e-28  Score=246.42  Aligned_cols=311  Identities=14%  Similarity=0.180  Sum_probs=225.8

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      +++.+.+.. ++++...+.|.....+..+++++.+|+++|.+..+++++   |++|+..++.+++++||+|+++.|.|++
T Consensus        64 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~s---Gt~a~~~~l~~~~~~gd~v~~~~~~~~~  139 (399)
T 3tqx_A           64 KTAQTVVEQ-YGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSS---CFDANGGLFETLLGPEDAIISDELNHAS  139 (399)
T ss_dssp             HHHHHHHHH-HCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHTTHHHHCCTTCEEEEETTCCHH
T ss_pred             HHHHHHHHH-hCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECc---hHHHHHHHHHHhcCCCCEEEECCcccHH
Confidence            555555543 344334444544456789999999999999998899999   9999999999999999999999999999


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC------CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT  227 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~  227 (450)
                      +...+.     ..|.++..++..|+++|++++ ++      ++++|++++|+||||.+.|+++|.++|+++|+++|+|++
T Consensus       140 ~~~~~~-----~~g~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~  213 (399)
T 3tqx_A          140 IIDGIR-----LCKAQRYRYKNNAMGDLEAKL-KEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDS  213 (399)
T ss_dssp             HHHHHH-----SCCSEEEEECTTCTTHHHHHH-HHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECT
T ss_pred             HHHHHH-----HcCCceeEeCCCCHHHHHHHH-HhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECC
Confidence            988775     468899999888899999888 43      899999999999999999999999999999999999999


Q ss_pred             CC-CC-CCC------ccCC--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH---HH
Q 013079          228 FS-PL-VLS------PARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA---FE  294 (450)
Q Consensus       228 ~~-~~-~~~------~~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a---~~  294 (450)
                      |+ .+ ...      ...+  ++|+++.|+||++++  .+ |||++.++++++.+........ . .++.++..+   ..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g--~~-gG~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~  288 (399)
T 3tqx_A          214 HAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGG--AS-GGYTSGHKEIIEWLRNRSRPYL-F-SNTVAPVIVATSLK  288 (399)
T ss_dssp             TTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCS--SC-CEEEEECHHHHHHHHHHCHHHH-S-SCCCCHHHHHHHHH
T ss_pred             ccccccCCCCCchHHhhCCCCCCcEEEecchHhccc--Cc-eEEEEcCHHHHHHHHHhCccee-c-cCCCcHHHHHHHHH
Confidence            93 33 211      0111  579999999999992  23 4999999999988876543221 1 222333222   22


Q ss_pred             HHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh
Q 013079          295 LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ  373 (450)
Q Consensus       295 ~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~  373 (450)
                      .+... ++.....+++.++++++.+.|++++..+. +                   ..|+++++.++.......+.+.|.
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~l~  348 (399)
T 3tqx_A          289 VLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLV-P-------------------GNHPIIPVMLGDAQLATNMADHLL  348 (399)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCBC-C-------------------CSSSEEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcC-C-------------------CCCCEEEEEeCCHHHHHHHHHHHH
Confidence            22222 34566677788999999999998765443 2                   246689999987656778888877


Q ss_pred             ccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          374 NYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       374 ~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      ..   | +.+..+..      +.              ....++.||||++ ...+++.++.+.++|.++.+
T Consensus       349 ~~---g-i~v~~~~~------~~--------------~~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~  394 (399)
T 3tqx_A          349 QE---G-IYVVGFSY------PV--------------VPMGKARIRVQMS-AVHTQQQLDRAIEAFGQVGK  394 (399)
T ss_dssp             HT---T-EECCEECT------TT--------------SCTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred             HC---C-CEEeeeCC------CC--------------CCCCCceEEEEee-cCCCHHHHHHHHHHHHHHHH
Confidence            52   3 44443211      00              0112468999999 76666777777666666543

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.97  E-value=7.1e-29  Score=245.25  Aligned_cols=278  Identities=15%  Similarity=0.172  Sum_probs=203.8

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      ..+...++++.||++++.  +.+++|+|   +++++++++++++++| |+|+++.|+|+++...+.     ..|.++..+
T Consensus        56 ~~~~~~~lr~~la~~~~~~~~~v~~~~G---~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~-----~~g~~~~~v  127 (356)
T 1fg7_A           56 PECQPKAVIENYAQYAGVKPEQVLVSRG---ADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECRTV  127 (356)
T ss_dssp             CCSSCHHHHHHHHHHHTSCGGGEEEESH---HHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEEEC
T ss_pred             CCccHHHHHHHHHHHhCCChHHEEEcCC---HHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHH-----HcCCEEEEe
Confidence            334468899999999986  46899999   9999999999999999 999999999999988775     257788887


Q ss_pred             CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHH---HHHHHHhcCCEEEEeCCCCCCC--CCcc----CCC
Q 013079          174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPE---LSRLAHDKGVTVVVDNTFSPLV--LSPA----RLG  239 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~---I~~la~~~gi~livD~~~~~~~--~~~~----~~g  239 (450)
                      +.+     |++++++++ + ++++|++++||||||.+.|.++   |+++|+ +|+++|+|++|..+.  .+..    ..+
T Consensus       128 ~~~~~~~~d~~~l~~~i-~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~  204 (356)
T 1fg7_A          128 PTLDNWQLDLQGISDKL-D-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYP  204 (356)
T ss_dssp             CCCTTSCCCHHHHHTSC-T-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCT
T ss_pred             eCCCCCCCCHHHHHHHh-c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCC
Confidence            753     789999988 6 8999999999999999988554   455566 899999999995443  1222    236


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCc--HHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPH--LGLRMKEHCHRALIFA  317 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~--l~~~~~~~~~~~~~l~  317 (450)
                      .++++.|+||++|++|+|+ ||++.++++++.+...+..   ...+.+.+.++..++.....  +....+++.++++++.
T Consensus       205 ~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~  280 (356)
T 1fg7_A          205 HLAILRTLSKAFALAGLRC-GFTLANEEVINLLMKVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLI  280 (356)
T ss_dssp             TEEEEEESSSTTCCGGGCC-EEEEECHHHHHHHHHHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEecchHhhcCchhhh-EEEEeCHHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999998 9999999999888766542   22333333333333322122  5556667788899999


Q ss_pred             HHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc-cccccccccc
Q 013079          318 RRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL-GYYETLMSCS  395 (450)
Q Consensus       318 ~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~-G~~~s~~~~~  395 (450)
                      +.|++++. ....|.                   .|.++++.+++   ...+.+.|..   .| +.+.. |+.+      
T Consensus       281 ~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~---~~~l~~~L~~---~g-I~v~~~g~~~------  328 (356)
T 1fg7_A          281 AALKEIPCVEQVFDS-------------------ETNYILARFKA---SSAVFKSLWD---QG-IILRDQNKQP------  328 (356)
T ss_dssp             HHHHHSTTEEEECCC-------------------SSSEEEEEETT---HHHHHHHHHH---TT-EECEECTTST------
T ss_pred             HHHHhCCCceEECCC-------------------CCeEEEEECCC---HHHHHHHHHH---CC-EEEEECCCCC------
Confidence            99998863 222332                   46688999972   4567777754   33 45554 4332      


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                      +. ++.+|||++ .   ++.++.+.++|+++
T Consensus       329 ----------------~~-~~~iRis~~-~---~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          329 ----------------SL-SGCLRITVG-T---REESQRVIDALRAE  354 (356)
T ss_dssp             ----------------TC-TTEEEEECC-C---HHHHHHHHHHHHTC
T ss_pred             ----------------CC-CCeEEEEeC-C---HHHHHHHHHHHHhh
Confidence                            11 368999999 4   45677777777654

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.97  E-value=3.6e-29  Score=248.60  Aligned_cols=286  Identities=19%  Similarity=0.191  Sum_probs=203.1

Q ss_pred             ChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           98 NPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .+...++++.+|++++   .+.+++|+|   |++|+.+++.+++++||+|+++.|.|+++...+.     ..|.++..++
T Consensus        62 ~~g~~~l~~~la~~~~~~~~~~v~~~~g---~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~  133 (375)
T 3op7_A           62 IEGSPAFKKSVSQLYTGVKPEQILQTNG---ATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPK-----SLGAEVDLWQ  133 (375)
T ss_dssp             TTCCHHHHHHHHTTSSSCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHH-----HTTCEEEEEE
T ss_pred             CCChHHHHHHHHHHhccCChhhEEEcCC---hHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEEEe
Confidence            3446789999999863   477999999   9999999999999999999999999999887765     2577777776


Q ss_pred             CC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----CCC
Q 013079          175 IS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----RLG  239 (450)
Q Consensus       175 ~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-----~~g  239 (450)
                      .+       |+++|++++ ++++++|++++|+||||.+.|   +++|.++|+++|+++|+|++|..+...+.     ..+
T Consensus       134 ~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~  212 (375)
T 3op7_A          134 IEEENGWLPDLEKLRQLI-RPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYD  212 (375)
T ss_dssp             EEGGGTTEECHHHHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCT
T ss_pred             ccccCCCCCCHHHHHHhh-ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcC
Confidence            43       899999999 789999999999999999999   99999999999999999999965544311     125


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC-cHHHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP-HLGLRMKEHCHRALIFAR  318 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~-~l~~~~~~~~~~~~~l~~  318 (450)
                      .++++.|+||.++++|.|+ ||++.++++++.+...+... ...++.+.+.++..++...+ .+....+++.++++.+.+
T Consensus       213 ~~i~~~s~sK~~~~~G~r~-G~v~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  290 (375)
T 3op7_A          213 KGIAVNSLSKTYSLPGIRI-GWVAANHQVTDILRDYRDYT-MICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQ  290 (375)
T ss_dssp             TEEEEEESSSSSSCGGGCC-EEEECCHHHHHHHTTTGGGT-TSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeEChhhcCCcccce-EEEEeCHHHHHHHHHHHhhh-ccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            7799999999999899998 99999999998887655421 12223333333333333222 233344455788889999


Q ss_pred             HHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh-hccccccccccccccccccccccc
Q 013079          319 RMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSG  396 (450)
Q Consensus       319 ~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l-~~~~~~g~i~vs~G~~~s~~~~~~  396 (450)
                      .|++++. .+..|.                   .|.++++.++.......+...+ ..   .| +.+..|+.+.      
T Consensus       291 ~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ll~~---~g-i~v~~g~~~~------  341 (375)
T 3op7_A          291 WIEEEPLVSYIRPA-------------------VVSTSFVKIAVDMPMEDFCLQLLQE---HG-VLLVPGNRFE------  341 (375)
T ss_dssp             HHHHCTTEEECCCS-------------------SSSCEEEEECCSSCHHHHHHHHHHH---HC-EECEEGGGGT------
T ss_pred             HHhhCCCceEecCC-------------------CeEEEeEEcCCCCCHHHHHHHHHHh---CC-EEEeChhhhC------
Confidence            9988654 433332                   3446667776322245565555 33   23 4555443321      


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEeCCCCC--HHHHHHHHHHHHHH
Q 013079          397 SSTSSELNAEEKALAGISAGLVRMSVGYLGT--LDQRWSQFEKALSR  441 (450)
Q Consensus       397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~--~~~~i~~l~~al~~  441 (450)
                                      . ++.+|||++ ..+  +++.++.|.+++.+
T Consensus       342 ----------------~-~~~iRi~~~-~~~~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          342 ----------------R-DGYVRLGFA-CEQETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             ----------------C-TTEEEECCC-SCHHHHHHHHHHHHHHHGG
T ss_pred             ----------------C-CCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence                            1 478999999 643  33334444444443

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.97  E-value=1.9e-28  Score=244.27  Aligned_cols=310  Identities=12%  Similarity=0.099  Sum_probs=223.1

Q ss_pred             HHHHHhhcC-CCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCch
Q 013079           74 ETMRRMFAG-ELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYG  152 (450)
Q Consensus        74 ~~~~~~~~~-~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~  152 (450)
                      +++.+.+.. ..+++.+.|.|+  ..+...++++.||+++|.+..+++++   |++|+.+++.+++++||.|+++.+.|+
T Consensus        60 ~a~~~~~~~~~~~~~~~~~~~g--~~~~~~~l~~~la~~~g~~~~i~~~s---Gt~a~~~~~~~~~~~gd~v~~~~~~~~  134 (384)
T 1bs0_A           60 RAWQQGAEQFGIGSGGSGHVSG--YSVVHQALEEELAEWLGYSRALLFIS---GFAANQAVIAAMMAKEDRIAADRLSHA  134 (384)
T ss_dssp             HHHHHHHHHHCSCCCSBTTTTC--CCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHCCTTCEEEEETTCCH
T ss_pred             HHHHHHHHHhCCCCCCcCcccC--ChHHHHHHHHHHHHHhCCCcEEEeCC---cHHHHHHHHHHhCCCCcEEEEcccccH
Confidence            555555543 122222223333  45788999999999999988999999   999999999999999999999999999


Q ss_pred             hHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC--CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079          153 GTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQG--RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP  230 (450)
Q Consensus       153 ~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~  230 (450)
                      .+...+.     ..|.++..++..|+++|++++.+.  ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.
T Consensus       135 ~~~~~~~-----~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~  209 (384)
T 1bs0_A          135 SLLEAAS-----LSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGT  209 (384)
T ss_dssp             HHHHHHH-----TSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             HHHHHHH-----HcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCccc
Confidence            9888775     368899999988999999988332  388999999999999999999999999999999999999943


Q ss_pred             CCCC------c--cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhcc-CCCchHHHHHHHHccCC-
Q 013079          231 LVLS------P--ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL-GPTMNPKVAFELSERIP-  300 (450)
Q Consensus       231 ~~~~------~--~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~-g~~~~~~~a~~~~~~~~-  300 (450)
                      ..+.      +  ...+.|++++|+||+++++|    |++++++++++.+........... .+.+.+.++..++.... 
T Consensus       210 ~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  285 (384)
T 1bs0_A          210 GVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG----AAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRS  285 (384)
T ss_dssp             TTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHS
T ss_pred             ceecCCCCchHHhcCCCCcEEEeeccchhhccC----cEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhc
Confidence            2211      1  12357999999999999654    999999988888765432121111 22222222222333333 


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079          301 -HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG  379 (450)
Q Consensus       301 -~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g  379 (450)
                       +.....+++.++++++.+.|++++.++. |.                   .|+++++.++.......+.+.|...   |
T Consensus       286 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~-------------------~~~~~~~~~~~~~~~~~l~~~l~~~---g  342 (384)
T 1bs0_A          286 DEGDARREKLAALITRFRAGVQDLPFTLA-DS-------------------CSAIQPLIVGDNSRALQLAEKLRQQ---G  342 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCEEC-SC-------------------CSSBCCEEEESHHHHHHHHHHHHHT---T
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCccc-CC-------------------CCCEEEEEeCCHHHHHHHHHHHHHC---C
Confidence             3455667788899999999988765543 21                   3567888887544567788777652   3


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                       +.+..|+...      .              ...++.||||++ ...+++.++.+.++|.++
T Consensus       343 -i~v~~~~~~~------~--------------~~~~~~~Ri~~~-~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          343 -CWVTAIRPPT------V--------------PAGTARLRLTLT-AAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             -EECCEECTTS------S--------------CTTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred             -cEEEeecCCC------C--------------CCCCceEEEEEc-CCCCHHHHHHHHHHHHhh
Confidence             5555443210      0              012478999999 877788888888887654

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.97  E-value=1.1e-28  Score=247.45  Aligned_cols=312  Identities=13%  Similarity=0.120  Sum_probs=223.0

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      +++.+.+.. ++++.+.+.|.....+...++++.||+++|.+..+++++   |++|+..++++++++||.|+++.+.|++
T Consensus        66 ~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~s---Gs~a~~~~~~~~~~~gd~v~~~~~~~~~  141 (401)
T 1fc4_A           66 AAAKAGMDS-HGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSS---CFDANGGLFETLLGAEDAIISDALNHAS  141 (401)
T ss_dssp             HHHHHHHHH-HCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHTTHHHHCCTTCEEEEETTCCHH
T ss_pred             HHHHHHHHH-hCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCC---hHHHHHHHHHHHcCCCCEEEEcchhHHH
Confidence            555555432 333333344544346788999999999999988889999   9999999999999999999999999998


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcC------CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT  227 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~  227 (450)
                      +...+.     ..|.++..++..|+++|++++ ++      ++++|++++|+||||.+.|+++|.++|+++|+++|+|++
T Consensus       142 ~~~~~~-----~~g~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~  215 (401)
T 1fc4_A          142 IIDGVR-----LCKAKRYRYANNDMQELEARL-KEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDS  215 (401)
T ss_dssp             HHHHHH-----TSCSEEEEECTTCHHHHHHHH-HHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECT
T ss_pred             HHHHHH-----HcCCceEEECCCCHHHHHHHH-HHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECc
Confidence            877654     368899999888999999988 43      799999999999999999999999999999999999999


Q ss_pred             C-CCCCCC-c------cC--CCCeEEEeCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhhhhh-hccCCCchHHHHHHH
Q 013079          228 F-SPLVLS-P------AR--LGADVVVHSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQGAL-MLLGPTMNPKVAFEL  295 (450)
Q Consensus       228 ~-~~~~~~-~------~~--~g~di~~~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~~-~~~g~~~~~~~a~~~  295 (450)
                      | .++... .      ..  .++|+++.|+||++ ++.    ||++++++++++.+........ ....+.+.+.++..+
T Consensus       216 ~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~----gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  291 (401)
T 1fc4_A          216 HAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS----GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKV  291 (401)
T ss_dssp             TTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS----CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHH
T ss_pred             ccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCC----CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHH
Confidence            9 365421 0      11  25799999999999 544    3999999999888876543111 111222222222222


Q ss_pred             HccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc
Q 013079          296 SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY  375 (450)
Q Consensus       296 ~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~  375 (450)
                      +..........+++.++++++.+.|++++.++. |                   +.|+++++.+++......+.+.|...
T Consensus       292 l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-------------------~~~~~~~~~~~~~~~~~~l~~~l~~~  351 (401)
T 1fc4_A          292 LEMVEAGSELRDRLWANARQFREQMSAAGFTLA-G-------------------ADHAIIPVMLGDAVVAQKFARELQKE  351 (401)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBC-C-------------------SSSSEEEEEEECHHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHcCCccc-C-------------------CCCCEEEEEcCChHHHHHHHHHHHHC
Confidence            222222345667778899999999998765443 3                   24679999998654567787777652


Q ss_pred             ccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          376 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       376 ~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                         | +.+..|..+..                    ....+.+|||++ ...+++.++.+.++|.++.+
T Consensus       352 ---g-i~v~~~~~~~~--------------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~~  395 (401)
T 1fc4_A          352 ---G-IYVTGFFYPVV--------------------PKGQARIRTQMS-AAHTPEQITRAVEAFTRIGK  395 (401)
T ss_dssp             ---T-EECCEECTTSS--------------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred             ---C-cEEeeecCCCC--------------------CCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHH
Confidence               3 55555533210                    011468999999 76666666666666665533

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.97  E-value=2.5e-29  Score=251.77  Aligned_cols=280  Identities=15%  Similarity=0.189  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCC-CEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSG-GHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~g-d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++++.+|+++    |    .+.+++|+|   |++|+++++++++++| |+|+++.|.|+++...+.     ..|.++.
T Consensus        78 ~~~lr~~la~~l~~~~g~~~~~~~i~~~~g---~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~-----~~g~~~~  149 (398)
T 3ele_A           78 DVETRAAIAEFLNNTHGTHFNADNLYMTMG---AAASLSICFRALTSDAYDEFITIAPYFPEYKVFVN-----AAGARLV  149 (398)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHH-----HTTCEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCChHHEEEccC---HHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHH-----HcCCEEE
Confidence            345666666654    3    467999999   9999999999999999 999999999999988775     3688888


Q ss_pred             EeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHh------cCCEEEEeCCCCCCCCCc-
Q 013079          172 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHD------KGVTVVVDNTFSPLVLSP-  235 (450)
Q Consensus       172 ~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~------~gi~livD~~~~~~~~~~-  235 (450)
                      .++.+      |+++|++++ ++++++|++++|+||||.+.+   +++|+++|++      +|+++|+|++|+.+.+.. 
T Consensus       150 ~v~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~  228 (398)
T 3ele_A          150 EVPADTEHFQIDFDALEERI-NAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI  228 (398)
T ss_dssp             EECCCTTTSSCCHHHHHHTC-CTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTC
T ss_pred             EEecCCcCCcCCHHHHHHHh-CcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCC
Confidence            88765      899999999 788999999999999999988   6777899998      999999999996544321 


Q ss_pred             ------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHH------HHHHHHhhhhhhccCCCchHHHHHHHHccCCcHH
Q 013079          236 ------ARLGADVVVHSISKFISGGADIIAGAVCGPANLV------NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG  303 (450)
Q Consensus       236 ------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~------~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~  303 (450)
                            ...+.++++.|+||.+|++|.|+ ||++.+++++      ..+......   ......+......+...++...
T Consensus       229 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~l~~~~  304 (398)
T 3ele_A          229 KVPFVTKYYDNTLVCYSYSKSLSLPGERI-GYVLVPDEVYDKAELYAAVCGAGRA---LGYVCAPSLFQKMIVKCQGATG  304 (398)
T ss_dssp             CCCCGGGTCSSEEEEEESTTTSSCTTTCC-EEEECCTTSTTHHHHHHHHHHHHHH---TTCCCSCHHHHHHHTTCTTCCC
T ss_pred             CcCChHhhcCCeEEEEehhhcCCCcccee-EEEEEcchhhhHHHHHHHHHHHhhh---ccccCCCHHHHHHHHHHhcCHH
Confidence                  12367899999999999999998 9998887643      333322221   1111222222222222222211


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079          304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV  383 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v  383 (450)
                       ..+++.++++++.+.|++++..+..|.                   .|.++++.++..+ ...+.+.|..   .| +.+
T Consensus       305 -~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~l~~---~g-i~v  359 (398)
T 3ele_A          305 -DINAYKENRDLLYEGLTRIGYHCFKPD-------------------GAFYMFVKALEDD-SNAFCEKAKE---ED-VLI  359 (398)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCEECCS-------------------BSSEEEEECSSSC-HHHHHHHHHT---TT-EEC
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCeecCCC-------------------eeEEEEEEcCCCC-HHHHHHHHHH---CC-EEE
Confidence             345677888899999988776655442                   3456899987432 5567777764   33 566


Q ss_pred             ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079          384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~  442 (450)
                      ..|+.+..                       ++.||||++ .  +++++.++.|.++++++
T Consensus       360 ~~g~~~~~-----------------------~~~iRis~~-~~~e~i~~~l~~l~~~l~~~  396 (398)
T 3ele_A          360 VAADGFGC-----------------------PGWVRISYC-VDREMIKHSMPAFEKIYKKY  396 (398)
T ss_dssp             EESGGGTC-----------------------TTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred             eCccccCC-----------------------CCeEEEEec-CCHHHHHHHHHHHHHHHHHh
Confidence            66644311                       478999999 5  23344444555554443

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.97  E-value=6.3e-31  Score=263.38  Aligned_cols=329  Identities=14%  Similarity=0.107  Sum_probs=218.5

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc----cCCC-EEE
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC----SSGG-HVV  145 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~----~~gd-~Vi  145 (450)
                      .+++.+.+...++||.+.|.+++...+..+++++.+|+++|.+  .+++|+|   |++|+++++.+++    ++|| +|+
T Consensus        37 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---~t~al~~~~~~l~~~~~~~gd~~Vl  113 (400)
T 3vax_A           37 ADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSG---ATESNNIALLGLAPYGERTGRRHII  113 (400)
T ss_dssp             HHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESC---HHHHHHHHHHTTHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCC---HHHHHHHHHHHHHHhhccCCCCEEE
Confidence            3777777766678887777778777788999999999999975  6999999   9999999999987    8899 999


Q ss_pred             EeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079          146 AARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV  220 (450)
Q Consensus       146 ~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi  220 (450)
                      ++.++|+++...+..+ .+ .|.++.+++.+     |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|+
T Consensus       114 ~~~~~~~~~~~~~~~~-~~-~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~  190 (400)
T 3vax_A          114 TSAIEHKAVLEPLEHL-AG-RGFEVDFLTPGPSGRISVEGVMERL-RPDTLLVSLMHVNNETGVIQPVAELAQQLRATPT  190 (400)
T ss_dssp             EETTSCHHHHHHHHHH-HT-TTCEEEEECCCTTCCCCHHHHHTTC-CTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSC
T ss_pred             ECccccHhHHHHHHHH-Hh-cCCeEEEEccCCCCCcCHHHHHHhc-CCCceEEEEECCCCCceeeCcHHHHHHHHHhcCC
Confidence            9999999988777543 23 68899998875     899999999 7899999999999999999999999999999999


Q ss_pred             EEEEeCCCCC--CCCCccCCCCeEEEeCCCCccccCccceEEEEE-cCH-HHH---HHHHHHhhh---hhhccCCCchHH
Q 013079          221 TVVVDNTFSP--LVLSPARLGADVVVHSISKFISGGADIIAGAVC-GPA-NLV---NSMMDLHQG---ALMLLGPTMNPK  290 (450)
Q Consensus       221 ~livD~~~~~--~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~-~~~-~~~---~~l~~~~~~---~~~~~g~~~~~~  290 (450)
                      ++|+|++|+.  ...+.... +|+++.|+||.+|+.|  + |+++ .++ .+.   ..+.....+   .......+.+..
T Consensus       191 ~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (400)
T 3vax_A          191 YLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKG--V-GALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVP  266 (400)
T ss_dssp             EEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSS--C-EEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHH
T ss_pred             EEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCc--e-EEEEEecchhccccccccCceecCCCceeeeecCCCCHH
Confidence            9999999832  22233334 8999999999888766  4 6666 544 111   111111100   000112222222


Q ss_pred             --HHH-HHHcc-CCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013079          291 --VAF-ELSER-IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA  365 (450)
Q Consensus       291 --~a~-~~~~~-~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~  365 (450)
                        .+. .++.. .+.+.+..+++.++++++.+.|+ .+ ..+..|..                ...+++++|.+++.+ .
T Consensus       267 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~  328 (400)
T 3vax_A          267 LIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQD----------------HVVPHILNLSFEDVD-A  328 (400)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTT----------------SBCTTEEEEECTTCC-H
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcc----------------cCCCCEEEEEeCCCC-H
Confidence              211 12211 12455666777888899999998 43 35443321                024568999887432 4


Q ss_pred             HHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEe-CCCCCHHHHHHHHHHHHH
Q 013079          366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSV-GYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       366 ~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~-g~~~~~~~~i~~l~~al~  440 (450)
                      ..+.+.|. .+    +.++.|+.|+.....+        ......+|++    ++.||||+ | ...+++.++.+.++|.
T Consensus       329 ~~l~~~L~-~g----i~v~~g~~~~~~~~~~--------~~~~~~~g~~~~~~~~~iRls~~~-~~~t~e~i~~~~~~l~  394 (400)
T 3vax_A          329 EAFLVTLK-DL----VAVATGSASTSASFTP--------SHVLRAMGLPEEAASKSLRFSWTP-GQATDLDVEELARGVA  394 (400)
T ss_dssp             HHHHHHHH-HH----HHHTTTTEEEEEEECC--------HHHHHTTTCCHHHHTSEEEEEEEE-C---------------
T ss_pred             HHHHHHHh-cC----cEEEecccccCCCCCc--------cHHHHHcCCCccccCceEEEEccC-CCCCHHHHHHHHHHHH
Confidence            56667666 54    7888887765432221        2223334554    48999999 8 7777777777777776


Q ss_pred             Hhh
Q 013079          441 RMQ  443 (450)
Q Consensus       441 ~~~  443 (450)
                      ++.
T Consensus       395 ~~~  397 (400)
T 3vax_A          395 KLK  397 (400)
T ss_dssp             ---
T ss_pred             HHh
Confidence            653

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.97  E-value=2.6e-29  Score=248.93  Aligned_cols=280  Identities=16%  Similarity=0.180  Sum_probs=209.5

Q ss_pred             CChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           97 FNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      ..+...++++.+|+++|.   +.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.++
T Consensus        65 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g---~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v  136 (367)
T 3euc_A           65 PVPSSEALRAKLKEVMQVPAGMEVLLGNG---SDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQ-----FAGLEFVGV  136 (367)
T ss_dssp             CCCCHHHHHHHHHHHHTCCTTCEEEEEEH---HHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHH-----TTTCEEEEE
T ss_pred             CCCcHHHHHHHHHHHhCCCCcceEEEcCC---HHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHH-----HcCCeEEEe
Confidence            345678999999999998   67999999   9999999999999999999999999999887765     368888888


Q ss_pred             CCC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccC---HHHHHHHHHhc--CCEEEEeCCCCCCCCCc-----cC
Q 013079          174 DIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVAN---IPELSRLAHDK--GVTVVVDNTFSPLVLSP-----AR  237 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~---l~~I~~la~~~--gi~livD~~~~~~~~~~-----~~  237 (450)
                      +.+     |+++|++++ ++ ++++|++++|+||||.+.+   +++|+++|+++  |+++|+|++|+.+....     ..
T Consensus       137 ~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  215 (367)
T 3euc_A          137 PLRADFTLDRGAMLAAM-AEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTD  215 (367)
T ss_dssp             ECCTTSCCCHHHHHHHH-HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGT
T ss_pred             cCCCCCCCCHHHHHHHh-hccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhh
Confidence            754     899999999 65 8999999999999999964   77888889999  99999999996553221     12


Q ss_pred             CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013079          238 LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA  317 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~  317 (450)
                      .+.++++.|+||. +++|.++ ||++.++++++.+......   ...+.+.+.++..++...+++..+.+++.++++++.
T Consensus       216 ~~~~i~~~s~sK~-~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  290 (367)
T 3euc_A          216 FGNLLVMRTVSKL-GLAGIRL-GYVAGDPQWLEQLDKVRPP---YNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVA  290 (367)
T ss_dssp             CTTEEEEEECCCT-TSCSCCE-EEEEECHHHHHHHGGGCCS---SCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecchhh-cccccCc-eeeeeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            3677999999999 8899998 9999999888887654431   223334444444444443345667777889999999


Q ss_pred             HHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccc
Q 013079          318 RRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG  396 (450)
Q Consensus       318 ~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~  396 (450)
                      +.|+++ +..+ .|.                   .|.++++.+++   ...+.+.|...   | +.++.|+.+.      
T Consensus       291 ~~l~~~~g~~~-~~~-------------------~~~~~~~~~~~---~~~l~~~l~~~---g-i~v~~~~~~~------  337 (367)
T 3euc_A          291 EGMAAHGGVTV-FPS-------------------AANFLLARVPD---AAQTFDRLLAR---K-VLIKNVSKMH------  337 (367)
T ss_dssp             HHHHTSTTCEE-CCC-------------------SSSEEEEECSC---HHHHHHHHHTT---T-EECEECGGGC------
T ss_pred             HHHHhCCCcEE-CCC-------------------CCeEEEEECCC---HHHHHHHHHHC---C-eEEEECCccC------
Confidence            999887 4453 332                   45688899872   45677777643   3 5666664431      


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          397 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                     +..++.||||++ .   ++.++.+.++|+++
T Consensus       338 ---------------~~~~~~iRis~~-~---~~~i~~~~~~l~~~  364 (367)
T 3euc_A          338 ---------------PLLANCLRVTVS-T---PEENAQFLEAFAAS  364 (367)
T ss_dssp             ---------------GGGTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred             ---------------CCCCCEEEEecC-C---HHHHHHHHHHHHHH
Confidence                           012578999999 3   33445555555543

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.97  E-value=6.1e-29  Score=249.45  Aligned_cols=288  Identities=17%  Similarity=0.143  Sum_probs=207.7

Q ss_pred             CCChhHHHHHHHHHHHhCC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           96 HFNPTVLNLSRQMAALEGT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ...+..+++++.+++++|.     +.+++|+|   |++|+++++.+++++||+|+++.|.|+++...+.     ..|.++
T Consensus        79 g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g---~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~  150 (407)
T 3nra_A           79 GDLGIRDLLAPRLAAFTGAPVDARDGLIITPG---TQGALFLAVAATVARGDKVAIVQPDYFANRKLVE-----FFEGEM  150 (407)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESH---HHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHH-----HTTCEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCC---cHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHH-----HcCCEE
Confidence            3456778889999998886     68999999   9999999999999999999999999999888775     367777


Q ss_pred             EEeCC-------C----CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC--
Q 013079          171 TFVDI-------S----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS--  234 (450)
Q Consensus       171 ~~v~~-------~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~--  234 (450)
                      ..++.       +    |+++|++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+.  
T Consensus       151 ~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~  229 (407)
T 3nra_A          151 VPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA  229 (407)
T ss_dssp             EEEEBCCCSSCCSSCCBCHHHHHHHH-HTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC
T ss_pred             EEeecccccccCcCCCcCHHHHHHHH-hhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            77765       1    899999999 678999999999999999998   999999999999999999999543321  


Q ss_pred             ----c-----cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHH
Q 013079          235 ----P-----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGL  304 (450)
Q Consensus       235 ----~-----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~  304 (450)
                          .     ...+.++++.|+||.+|++|.|+ ||+++++++++.+....... ...++.+.+.++..++. ...++..
T Consensus       230 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~  307 (407)
T 3nra_A          230 SYTHLRAEAAVDAENVVTIMGPSKTESLSGYRL-GVAFGSRAIIARMEKLQAIV-SLRAAGYSQAVLRGWFDEAPGWMED  307 (407)
T ss_dssp             CCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCC-EEEEECHHHHHHHHHHHHHH-TSSSCHHHHGGGGGTTCCCTTHHHH
T ss_pred             CCCChhhcCcccCCcEEEEeCcccccCCCeeeE-EEEEcCHHHHHHHHHHHhhh-ccCCChHHHHHHHHHHhccchHHHH
Confidence                1     11356799999999999999998 99999999998887665522 11222222222212222 1234666


Q ss_pred             HHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccc
Q 013079          305 RMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~  382 (450)
                      +.+++.++++++.+.|++++ ..+..|.                   .|.++++.++. ......+.+.|..  ..| +.
T Consensus       308 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~  365 (407)
T 3nra_A          308 RIARHQAIRDELLHVLRGCEGVFARTPQ-------------------AGSYLFPRLPKLAVAPAEFVKILRL--QAG-VV  365 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCBCCCCS-------------------BSSEECCBCCCBSSCHHHHHHHHHH--HHC-EE
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceeccCC-------------------eeEEEEEeCCCCCCCHHHHHHHHHH--hCC-EE
Confidence            77778889999999998873 3443222                   35678888764 2234566666632  123 56


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      ++.|+.+..                     ...+.||||++ .  +++.++.+.++|.
T Consensus       366 v~~g~~~~~---------------------~~~~~iRis~~-~--~~~~i~~~~~~l~  399 (407)
T 3nra_A          366 VTPGTEFSP---------------------HTADSVRLNFS-Q--DHEAAVAAARRIV  399 (407)
T ss_dssp             CEEGGGTCT---------------------TCTTBEEEECC-S--CHHHHHHHHHHHH
T ss_pred             EeCchhhCC---------------------CCCCEEEEEeC-C--CHHHHHHHHHHHH
Confidence            666655321                     12578999999 6  3334444444443

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.5e-28  Score=244.60  Aligned_cols=295  Identities=13%  Similarity=0.103  Sum_probs=207.6

Q ss_pred             ccCCCChhHHHHHHHHHHHhCCC--e-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh--HHHHHHHhCCCccC
Q 013079           93 YSRHFNPTVLNLSRQMAALEGTE--A-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACN  167 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~~--~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g  167 (450)
                      |+....+..+++++.+++++|.+  . +++|+|   |++|+.+++.+++++||+|+++.++|++  +...+.     ..|
T Consensus        47 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g---~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-----~~g  118 (386)
T 2dr1_A           47 RSKEYRKVHMDTVERLREFLEVEKGEVLLVPSS---GTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVE-----SNG  118 (386)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSC---HHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHH-----HTT
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC---hHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHH-----HhC
Confidence            33333577899999999999975  3 789999   9999999999999999999999999998  555443     268


Q ss_pred             eeEEEeCC-----CCHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCC
Q 013079          168 ITTTFVDI-----SDHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLG  239 (450)
Q Consensus       168 ~~v~~v~~-----~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g  239 (450)
                      .++.+++.     .|+++|++++.+ +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+..  ..+....+
T Consensus       119 ~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~  198 (386)
T 2dr1_A          119 RKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWG  198 (386)
T ss_dssp             CEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTT
T ss_pred             CceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccC
Confidence            88888876     389999998842 57999999999999999999999999999999999999998432  23444558


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHH----------------HHh-hhhhhccCCCchHHHHHHHHccC-C-
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMM----------------DLH-QGALMLLGPTMNPKVAFELSERI-P-  300 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~----------------~~~-~~~~~~~g~~~~~~~a~~~~~~~-~-  300 (450)
                      +|+++.|+||++++++. + |+++.++++++.+.                ... ........+...+.++..++... + 
T Consensus       199 ~di~~~s~sK~~~~~~g-~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  276 (386)
T 2dr1_A          199 LDVVFSSSQKAFGVPPG-L-AIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKM  276 (386)
T ss_dssp             CSEEEEETTSTTCCCSS-C-EEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEeccccccCCCc-e-EEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            89999999999997633 5 99999988877662                111 10111111222222232233222 1 


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079          301 -HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG  379 (450)
Q Consensus       301 -~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g  379 (450)
                       .+....+++.++++++.+.|++++.++..|.-                ...+++++|.++.......+.+.|...   |
T Consensus       277 g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g  337 (386)
T 2dr1_A          277 GGKEKWLEMYEKRAKMVREGVREIGLDILAEPG----------------HESPTITAVLTPPGIKGDEVYEAMRKR---G  337 (386)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTT----------------CBCSSEEEEECCTTCCHHHHHHHHHHT---T
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCcc----------------ccCCceEEEEcCCCCCHHHHHHHHHHC---C
Confidence             25566777889999999999988655443320                014679999997322355677777642   3


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                       +.+..|...                       ..++.||||++ ...+++.++.+.++|.+
T Consensus       338 -i~v~~~~~~-----------------------~~~~~iRi~~~-~~~~~~~i~~~~~~l~~  374 (386)
T 2dr1_A          338 -FELAKGYGS-----------------------VKEKTFRIGHM-GYMKFEDIQEMLDNLRE  374 (386)
T ss_dssp             -EECEECCGG-----------------------GTTTEEEEECC-SSCCHHHHHHHHHHHHH
T ss_pred             -eEEecCccc-----------------------cCCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence             555555321                       02478999999 64445555555444443

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.97  E-value=3e-29  Score=253.15  Aligned_cols=310  Identities=16%  Similarity=0.211  Sum_probs=214.6

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC------C---CeEEEecChHHHHHHHHHHHHHhccCCCEE
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG------T---EAAYCTASDKAGMSAISSVLMQLCSSGGHV  144 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g------~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~V  144 (450)
                      +++.+.+...    ...+.|+..  ....++++.||++++      .   +.+++|+|   |++|+++++..++++||+|
T Consensus        48 ~a~~~~~~~~----~~~~~y~~~--~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g---~~~a~~~~~~~~~~~gd~v  118 (422)
T 3fvs_A           48 EAFQHAVSGD----FMLNQYTKT--FGYPPLTKILASFFGELLGQEIDPLRNVLVTVG---GYGALFTAFQALVDEGDEV  118 (422)
T ss_dssp             HHHHHHHHSC----GGGGSCCCT--TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESH---HHHHHHHHHHHHCCTTCEE
T ss_pred             HHHHHHHhCC----CccCCCCCC--CCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECC---hHHHHHHHHHHHcCCCCEE
Confidence            5666655432    112334432  223456666666554      2   47999999   9999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeCC-----------------CCHHHHHHhhhcCCceEEEEecCCCCccccc-
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVDI-----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA-  206 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-----------------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~-  206 (450)
                      +++.|.|+++...+.     ..|.++.+++.                 .|+++|++++ ++++++|++++|+||||.+. 
T Consensus       119 l~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~nptG~~~~  192 (422)
T 3fvs_A          119 IIIEPFFDCYEPMTM-----MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF-TSRTKALVLNTPNNPLGKVFS  192 (422)
T ss_dssp             EEEESCCTTHHHHHH-----HTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCC
T ss_pred             EEcCCCchhhHHHHH-----HcCCEEEEEecccccccccccccccCCCCCHHHHHhhc-CCCceEEEECCCCCCCCcCCC
Confidence            999999999887775     25777766653                 2899999999 78899999999999999998 


Q ss_pred             --CHHHHHHHHHhcCCEEEEeCCCCCCCCC------ccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          207 --NIPELSRLAHDKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       207 --~l~~I~~la~~~gi~livD~~~~~~~~~------~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                        ++++|+++|+++|+++|+|++|+.+.+.      ...    .+.++++.|+||.+|++|.|+ ||+++++++++.+..
T Consensus       193 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~  271 (422)
T 3fvs_A          193 REELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKV-GWVLGPDHIMKHLRT  271 (422)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-EEEECCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceE-EEEEeCHHHHHHHHH
Confidence              5999999999999999999999654322      111    256799999999999999998 999999999888876


Q ss_pred             HhhhhhhccCCCchHHHHHHHHc--------cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhc
Q 013079          275 LHQGALMLLGPTMNPKVAFELSE--------RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMAN  346 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~--------~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~  346 (450)
                      .... ....++.+.+.++..++.        ..+++....+++.++++++.+.|++++..+..|.               
T Consensus       272 ~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------  335 (422)
T 3fvs_A          272 VHQN-SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQ---------------  335 (422)
T ss_dssp             HHHT-TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS---------------
T ss_pred             HHhh-ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC---------------
Confidence            5441 112333344444444443        2345666777789999999999999877665553               


Q ss_pred             cCCCcCcEEEEEeCCHHH-------------HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCC
Q 013079          347 KEYGFGGLLCLDMETEEK-------------ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI  413 (450)
Q Consensus       347 ~~~g~g~~~~~~l~~~~~-------------~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~  413 (450)
                          .|.++++.++....             ...+...+..  ..| +.++.|+.|.....                ...
T Consensus       336 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~g-v~v~~g~~f~~~~~----------------~~~  392 (422)
T 3fvs_A          336 ----GSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIK--NKG-LVAIPVSIFYSVPH----------------QKH  392 (422)
T ss_dssp             ----BSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHH--HHC-EECEEGGGGSCHHH----------------HTT
T ss_pred             ----eeeEEEEechhhcccccccccccccccHHHHHHHHHH--hcC-EEEeCcHHhcCCcC----------------CCC
Confidence                46688888753211             2345554322  123 67777765432100                011


Q ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          414 SAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       414 ~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ..+.||||++ .  +++.++.+.+.|.+
T Consensus       393 ~~~~iRis~~-~--~~e~i~~~l~~l~~  417 (422)
T 3fvs_A          393 FDHYIRFCFV-K--DEATLQAMDEKLRK  417 (422)
T ss_dssp             SCSEEEEECC-C--CHHHHHHHHHHHHH
T ss_pred             CCCeEEEEec-C--CHHHHHHHHHHHHH
Confidence            2589999999 6  44444444444444

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.97  E-value=2.4e-28  Score=247.48  Aligned_cols=290  Identities=14%  Similarity=0.107  Sum_probs=214.3

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+...++++.||+++|.+..+++++   |++|+..++.+++++||.|++..+.|.++...+.     ..|.++..++..
T Consensus       107 ~~~~~~~l~~~la~~~g~~~~i~~~s---Gs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~-----~~g~~~~~~~~~  178 (427)
T 2w8t_A          107 TFHDHMEVEQALRDFYGTTGAIVFST---GYMANLGIISTLAGKGEYVILDADSHASIYDGCQ-----QGNAEIVRFRHN  178 (427)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHH-----HSCSEEEEECTT
T ss_pred             CcHHHHHHHHHHHHHhCCCceEEecC---cHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH-----HcCCeeEEeCCC
Confidence            45788999999999999998999999   9999999999999999999999999999888775     367888888888


Q ss_pred             CHHHHHHhhhcC----CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc--------c--CCCCeE
Q 013079          177 DHEMVNSAIVQG----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP--------A--RLGADV  242 (450)
Q Consensus       177 d~~~l~~ai~~~----~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~--------~--~~g~di  242 (450)
                      |+++|++++ +.    ++++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+.+..        .  ..++|+
T Consensus       179 d~~~le~~l-~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di  257 (427)
T 2w8t_A          179 SVEDLDKRL-GRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDF  257 (427)
T ss_dssp             CHHHHHHHH-HTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSE
T ss_pred             CHHHHHHHH-HhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcE
Confidence            999999998 44    78999999999999999999999999999999999999995433221        1  125799


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH-HHHccCCcHHHHHHHHHHHHHHHHHHHH
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSERIPHLGLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~~~~l~~~~~~~~~~~~~l~~~L~  321 (450)
                      ++.|+||++|++|    ||+++++++++.+...........+..+...++. .++..++.+....+++.++++++.+.|+
T Consensus       258 ~~~s~sK~~g~~g----G~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~  333 (427)
T 2w8t_A          258 VVGTFSKSVGTVG----GFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLK  333 (427)
T ss_dssp             EEEESSSTTCSCC----EEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhccCC----CEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999654    9999888887766543211111112222222222 2333334446677788899999999998


Q ss_pred             hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCC
Q 013079          322 KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS  401 (450)
Q Consensus       322 ~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~  401 (450)
                      ++++.+..+.                  +.|+++++.+++......+.+.|...   | +.+..|..++.          
T Consensus       334 ~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~L~~~---G-i~v~~~~~~~~----------  381 (427)
T 2w8t_A          334 AMGFRLGTET------------------CDSAIVAVMLEDQEQAAMMWQALLDG---G-LYVNMARPPAT----------  381 (427)
T ss_dssp             HHTCEESCSS------------------CCSSEEEEEESSHHHHHHHHHHHHHT---T-EECEEECTTTS----------
T ss_pred             HcCCcccCCC------------------CCCCEEEEEECCHHHHHHHHHHHHHC---C-eEEeeeCCCCC----------
Confidence            8766543221                  14569999998755577788887652   3 55554432210          


Q ss_pred             CCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       402 ~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                ....+.||||++ ...+++.++.+.++|.++
T Consensus       382 ----------~~~~~~lRi~~~-~~~t~e~i~~~~~~l~~~  411 (427)
T 2w8t_A          382 ----------PAGTFLLRCSIC-AEHTPAQIQTVLGMFQAA  411 (427)
T ss_dssp             ----------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred             ----------CCCCeEEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence                      011468999999 766666666666666554

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.97  E-value=3.8e-28  Score=237.44  Aligned_cols=276  Identities=16%  Similarity=0.167  Sum_probs=204.7

Q ss_pred             CCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           96 HFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +.++...++++.||++++.+  .+++|+|   +++++++++..+  +||+|+++.|+|+++...+.     ..|.++.++
T Consensus        48 y~~~~~~~lr~~la~~~~~~~~~i~~t~G---~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~v  117 (337)
T 3p1t_A           48 YPFDAEPRVMRKLAEHFSCPEDNLMLVRG---IDECFDRISAEF--SSMRFVTAWPGFDGYRARIA-----VSGLRHFEI  117 (337)
T ss_dssp             CCTTHHHHHHHHHHHHHTSCGGGEEEESH---HHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHT-----TSCCEEEEE
T ss_pred             CCCCchHHHHHHHHHHhCcCHHHEEEeCC---HHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHH-----HcCCEEEEe
Confidence            34678899999999999974  6899999   999999999887  89999999999999887764     368888888


Q ss_pred             CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC----ccCCCCeEEE
Q 013079          174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS----PARLGADVVV  244 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~----~~~~g~di~~  244 (450)
                      +.+     |+++++++   .++++|++++|+||||.+.|+++|.++|+++++ +|+|++|..+...    ....+.++++
T Consensus       118 ~~~~~~~~d~~~l~~~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~  193 (337)
T 3p1t_A          118 GLTDDLLLDPNDLAQV---SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVF  193 (337)
T ss_dssp             CBCTTSSBCHHHHTTC---CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEE
T ss_pred             cCCCCCCCCHHHHHhh---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEE
Confidence            754     78888764   468999999999999999999999999999997 5669998544321    1122678999


Q ss_pred             eCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          245 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      +|+||.+|++|+|+ ||++.++++++.+.....   ....+.+.+.++..++.....+..+.+++.++++++.+.|++++
T Consensus       194 ~S~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~---~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  269 (337)
T 3p1t_A          194 RSFSKSYGLAGLRL-GALFGPSELIAAMKRKQW---FCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGLG  269 (337)
T ss_dssp             EESSSTTCCTTTCC-EEEECCHHHHHHHHTTSC---TTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eeCchhccCcchhe-EEEEeCHHHHHHHHhhcC---CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            99999999999998 999999999888865433   12223333334433444333455666777788899999999886


Q ss_pred             CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079          325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN  404 (450)
Q Consensus       325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~  404 (450)
                      ..+..|                    .|+++++.+++.+   .+.+.|...   | +.++.|+.+.              
T Consensus       270 ~~~~~~--------------------~~~~~~~~~~~~~---~~~~~l~~~---g-i~v~~g~~~~--------------  308 (337)
T 3p1t_A          270 YRVASS--------------------EANFVLVENAAGE---RTLRFLRER---G-IQVKDAGQFG--------------  308 (337)
T ss_dssp             CCBCCC--------------------SSSEEEEECTTTH---HHHHHHHHT---T-EECEEGGGGT--------------
T ss_pred             CEECCC--------------------CCeEEEEEcCCHH---HHHHHHHHC---C-eEEEECccCC--------------
Confidence            554322                    3568888887533   344444432   3 5667665431              


Q ss_pred             HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                              . ++.||||++ .   ++.++.|.++|+++.
T Consensus       309 --------~-~~~iRis~~-~---~~~~~~l~~al~~~~  334 (337)
T 3p1t_A          309 --------L-HHHIRISIG-R---EEDNDRLLAALAEYS  334 (337)
T ss_dssp             --------C-CSEEEEECC-C---HHHHHHHHHHHHHHT
T ss_pred             --------C-CCeEEEecC-C---HHHHHHHHHHHHHHh
Confidence                    1 478999999 4   555677777776654

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.97  E-value=9.6e-29  Score=250.38  Aligned_cols=285  Identities=15%  Similarity=0.134  Sum_probs=204.9

Q ss_pred             hhHHHHHHHHHHHhC-------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079           99 PTVLNLSRQMAALEG-------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g-------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ....++++.+|++++       .+.+++|+|   |++|+.+++..++++||+|+++.|+|+++...+.     ..|.++.
T Consensus        96 ~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g---~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~  167 (427)
T 3dyd_A           96 IGFLSSREEIASYYHCPEAPLEAKDVILTSG---CSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAE-----SMGIEVK  167 (427)
T ss_dssp             TCCHHHHHHHHHHHCBTTBCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEE
T ss_pred             CCcHHHHHHHHHHHhhcCCCCChHHEEEecC---cHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HcCCEEE
Confidence            456789999999988       467999999   9999999999999999999999999999887775     3577777


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------c
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------P  235 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~  235 (450)
                      +++.+       |++++++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+.      .
T Consensus       168 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~  246 (427)
T 3dyd_A          168 LYNLLPEKSWEIDLKQLEYLI-DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPL  246 (427)
T ss_dssp             EEEEEGGGTTEECHHHHHSSC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCG
T ss_pred             EEecccccCCCCCHHHHHHHh-ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccH
Confidence            76542       899999999 778999999999999999999   999999999999999999999655322      1


Q ss_pred             cCCC---CeEEEeCCCCccccCccceEEEEEcC-------HHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHH
Q 013079          236 ARLG---ADVVVHSISKFISGGADIIAGAVCGP-------ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLG  303 (450)
Q Consensus       236 ~~~g---~di~~~S~sK~~g~~g~~igG~l~~~-------~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~  303 (450)
                      ..++   ..+++.|+||.++++|+|+ ||++.+       +++.+.+......  ...++.+.+.++..++..  .+++.
T Consensus       247 ~~~~~~~~vi~~~S~sK~~~~~G~ri-G~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~  323 (427)
T 3dyd_A          247 ATLSTDVPILSCGGLAKRWLVPGWRL-GWILIHDRRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYH  323 (427)
T ss_dssp             GGGCSSCCEEEEEESTTTSSCGGGCC-EEEEEECSTTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHhCCCCcEEEEeeccccCCCcCcce-EEEEecCcchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHH
Confidence            1222   3478899999999999999 888765       4566666554331  133444444444444442  23456


Q ss_pred             HHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHHHhh-ccc
Q 013079          304 LRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMNYLQ-NYA  376 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~~l~-~~~  376 (450)
                      .+.+++.++++.+.+.|++++ +.+..|.                   .|.++++.++..     .....+...|. .  
T Consensus       324 ~~~~~~~~~~~~l~~~L~~~~g~~~~~p~-------------------~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~--  382 (427)
T 3dyd_A          324 NTLSFLKSNADLCYGALAAIPGLRPVRPS-------------------GAMYLMVGIEMEHFPEFENDVEFTERLVAE--  382 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTEEEECCS-------------------BTTEEEEEECGGGCTTCSSHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceecCCC-------------------eeEEEEEecCHhhcCCCCCHHHHHHHHHHH--
Confidence            667778889999999999874 3544443                   456788887611     12345665553 3  


Q ss_pred             cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079          377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~  442 (450)
                       .| +.+..|+.+.                       .++.+|||++ .  +++++.++.|.+++.++
T Consensus       383 -~g-V~v~~g~~~~-----------------------~~~~iRis~~-~~~e~i~~~l~~l~~~l~~~  424 (427)
T 3dyd_A          383 -QS-VHCLPATCFE-----------------------YPNFIRVVIT-VPEVMMLEACSRIQEFCEQH  424 (427)
T ss_dssp             -HC-EECEEGGGGT-----------------------CTTEEEEESC-SCHHHHHHHHHHHHHHHHHH
T ss_pred             -CC-EEEECCcccC-----------------------CCCeEEEEEC-CCHHHHHHHHHHHHHHHHHh
Confidence             23 5666554321                       1478999999 5  22344444444444443

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.97  E-value=7.2e-29  Score=247.47  Aligned_cols=305  Identities=13%  Similarity=0.114  Sum_probs=216.6

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCC
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAART  149 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~  149 (450)
                      +++.+.+..      ..+.|+....+..+++++.+++.+|    .+.+++|+|   |++|+++++.+++++||+|+++.|
T Consensus        52 ~a~~~~~~~------~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~~  122 (391)
T 4dq6_A           52 DSLKNRLEQ------EIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPG---VIPAISLLINELTKANDKIMIQEP  122 (391)
T ss_dssp             HHHHHHHTT------CCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             HHHHHHHhC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCC---hHHHHHHHHHHhCCCCCEEEEcCC
Confidence            555555532      2355776667788899999999887    467999999   999999999999999999999999


Q ss_pred             CchhHHHHHHHhCCCccCeeEEEeCCC---------CHHHHHHhhhcCCceEEEEecCCCCcccc---cCHHHHHHHHHh
Q 013079          150 LYGGTHALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHD  217 (450)
Q Consensus       150 ~y~~~~~~~~~~~~~~~g~~v~~v~~~---------d~~~l~~ai~~~~t~lv~i~~~~NptG~v---~~l~~I~~la~~  217 (450)
                      .|+++...+.     ..|.++.+++.+         |+++|++++ ++ +++|++++|+||||.+   .++++|+++|++
T Consensus       123 ~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~  195 (391)
T 4dq6_A          123 VYSPFNSVVK-----NNNRELIISPLQKLENGNYIMDYEDIENKI-KD-VKLFILCNPHNPVGRVWTKDELKKLGDICLK  195 (391)
T ss_dssp             CCTHHHHHHH-----HTTCEEEECCCEECTTSCEECCHHHHHHHC-TT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHH-----HcCCeEEeeeeeecCCCceEeeHHHHHHHh-hc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHH
Confidence            9999988775     367888887754         899999999 66 9999999999999999   568899999999


Q ss_pred             cCCEEEEeCCCCCCCCC------ccCC-----CCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCC
Q 013079          218 KGVTVVVDNTFSPLVLS------PARL-----GADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGP  285 (450)
Q Consensus       218 ~gi~livD~~~~~~~~~------~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~  285 (450)
                      +|+++|+|++|..+.+.      ...+     +.++++.|+||.+|++|.|+ |+++.++ ++.+.+...........++
T Consensus       196 ~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (391)
T 4dq6_A          196 HNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQS-SYVVLPDEKDYKLLDDAFTRIDIKRNN  274 (391)
T ss_dssp             TTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTCCCCC
T ss_pred             cCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccce-EEEEeCCHHHHHHHHHHHHhhcCCCCC
Confidence            99999999999654332      1222     34599999999999899998 9988775 8888887665422212223


Q ss_pred             CchHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-
Q 013079          286 TMNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-  361 (450)
Q Consensus       286 ~~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-  361 (450)
                      .+.+.++..++... +++..+.+++.++++++.+.|++ ++ ..+..|.                   .+.++++.++. 
T Consensus       275 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~  335 (391)
T 4dq6_A          275 CFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPE-------------------GTYLLWVDFSAL  335 (391)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCS-------------------BSSEEEEECGGG
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCC-------------------ccEEEEEEhhhc
Confidence            33333333333332 33556667778899999999987 43 4443322                   34466788863 


Q ss_pred             HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ......+.+.|...  +| +.+..|+.+..                     ..++.+|||++ .  +++.++.+.++|.+
T Consensus       336 ~~~~~~~~~~l~~~--~g-i~v~~g~~~~~---------------------~~~~~iRis~~-~--~~~~i~~~l~~l~~  388 (391)
T 4dq6_A          336 GLSDEELESILVQK--GK-VALNQGNSFGI---------------------GGSGYQRINLA-C--PRSMLEEALIRIKN  388 (391)
T ss_dssp             CCCHHHHHHHHHHT--TC-EECEEGGGGCT---------------------TCTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh--CC-EEeeCchhhCC---------------------CCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence            12356677777642  24 56666644311                     12578999999 5  34444444444443

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=2.7e-28  Score=243.93  Aligned_cols=278  Identities=18%  Similarity=0.196  Sum_probs=201.5

Q ss_pred             hHHHHHHHHHHHh----CC----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALE----GT----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~----g~----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...++++.+|+++    |.    +.+++|+|   |++|+++++.+++++||+|++++|+|+++...+.     ..|.++.
T Consensus        79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g---~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~  150 (389)
T 1o4s_A           79 GIYELREGIAKRIGERYKKDISPDQVVVTNG---AKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII-----LAGGTVN  150 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHEEEecC---HHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEE
Confidence            3567777888776    53    57999999   9999999999999999999999999999987774     3677887


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA  236 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~  236 (450)
                      +++.+       |+++|++++ ++++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|+.+.+.     ..
T Consensus       151 ~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~  229 (389)
T 1o4s_A          151 VVETFMSKNFQPSLEEVEGLL-VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSIL  229 (389)
T ss_dssp             EEECCGGGTTCCCHHHHHHTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHH
T ss_pred             EEecCCccCCCCCHHHHHHhc-ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHh
Confidence            77653       789999999 778999999999999999977   999999999999999999999554431     11


Q ss_pred             C----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079          237 R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR  312 (450)
Q Consensus       237 ~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~  312 (450)
                      .    .++|+++.|+||++|++|.|+ ||+++++++++.+....... ....+.+.+.++..++...  +....+++.++
T Consensus       230 ~~~~~~~~~i~~~s~sK~~~~~G~r~-G~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~  305 (389)
T 1o4s_A          230 DVSEGFDRIVYINGFSKSHSMTGWRV-GYLISSEKVATAVSKIQSHT-TSCINTVAQYAALKALEVD--NSYMVQTFKER  305 (389)
T ss_dssp             HHCSSSTTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred             hcCCCCCcEEEEeechhhcCCcccce-EEEEeCHHHHHHHHHHhhhc-ccCCCHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence            1    368999999999999899998 99999999888887655421 1222333333333333222  55666777889


Q ss_pred             HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccccccc
Q 013079          313 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       313 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~-~~~~~g~i~vs~G~~~s~  391 (450)
                      ++++.+.|++++..+..|.                   .|.++++.++  .....+.+.|. ..   | +.+..|+.+  
T Consensus       306 ~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~--~~~~~l~~~l~~~~---g-i~v~~g~~f--  358 (389)
T 1o4s_A          306 KNFVVERLKKMGVKFVEPE-------------------GAFYLFFKVR--GDDVKFCERLLEEK---K-VALVPGSAF--  358 (389)
T ss_dssp             HHHHHHHHHHTTCCCCCCS-------------------BSSEEEEECS--SCHHHHHHHHHHHH---C-EECEEGGGG--
T ss_pred             HHHHHHHHHhcCCeeecCC-------------------cceEEEEeCC--CCHHHHHHHHHHHC---C-EEEeCchhc--
Confidence            9999999998755443221                   3557888886  12445666654 32   2 455555332  


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                          +. ++.||||++ .  +++.++.+.+.|.+
T Consensus       359 --------------------~~-~~~~Ris~~-~--~~~~l~~~l~~l~~  384 (389)
T 1o4s_A          359 --------------------LK-PGFVRLSFA-T--SIERLTEALDRIED  384 (389)
T ss_dssp             --------------------TC-TTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred             --------------------CC-CCeEEEEEe-C--CHHHHHHHHHHHHH
Confidence                                11 368999999 6  34444444444443

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.97  E-value=8.4e-29  Score=248.82  Aligned_cols=288  Identities=16%  Similarity=0.173  Sum_probs=207.1

Q ss_pred             HHHHHHHHHHHhC--------C-CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALEG--------T-EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~g--------~-~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++++.+|++++        . +.+++|+|   |++|+++++..++++||+|+++.|.|+++...+.     ..|.++.
T Consensus        63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~  134 (410)
T 3e2y_A           63 HPALVKALSCLYGKIYQRQIDPNEEILVAVG---AYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVR-----MAGAVPV  134 (410)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEE
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCC---cHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHH-----HcCCEEE
Confidence            4567777777765        3 67999999   9999999999999999999999999999988775     2577777


Q ss_pred             EeCCC----------------CHHHHHHhhhcCCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          172 FVDIS----------------DHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       172 ~v~~~----------------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                      +++.+                |++++++++ ++++++|++++|+||||.+.   ++++|+++|+++|+++|+|++|+.+.
T Consensus       135 ~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~  213 (410)
T 3e2y_A          135 FIPLRSKPTDGMKWTSSDWTFDPRELESKF-SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLV  213 (410)
T ss_dssp             EEECEECCCCSSCCBGGGEECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCB
T ss_pred             EEeccccccccccccccCCcCCHHHHHhhc-CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcc
Confidence            66543                899999999 78899999999999999994   68999999999999999999996543


Q ss_pred             CC------ccCC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-----
Q 013079          233 LS------PARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-----  297 (450)
Q Consensus       233 ~~------~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-----  297 (450)
                      +.      ...+    +.++++.|+||.+|++|.|+ ||+++++++++.+...... ....++.+.+.++..++.     
T Consensus       214 ~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~  291 (410)
T 3e2y_A          214 YTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKL-GWSIGPAHLIKHLQTVQQN-SFYTCATPLQAALAEAFWIDIKR  291 (410)
T ss_dssp             CTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCC-EEEECCHHHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceE-EEEEECHHHHHHHHHHHHh-hccCCChHHHHHHHHHHHhhhcc
Confidence            32      1112    46799999999999999998 9999999998888765541 112333344444444433     


Q ss_pred             ---cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH-----------
Q 013079          298 ---RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE-----------  363 (450)
Q Consensus       298 ---~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~-----------  363 (450)
                         ...++....+++.++++++.+.|++++..+..|.                   .|.++++.+....           
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~  352 (410)
T 3e2y_A          292 MDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPD-------------------GGYFIIADVSSLGADLSDMNSDEP  352 (410)
T ss_dssp             TTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEBCS-------------------BSSEEEEECGGGCCCCTTCCSSCC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-------------------ccEEEEEEchhhhccccccccccc
Confidence               1344666677789999999999999877665553                   4668888875210           


Q ss_pred             HHHHHHHHh-hccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          364 KANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       364 ~~~~~~~~l-~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ....+...+ ..   .| +.++.|+.|....          ..+      ..++.||||++ .  +++.++.+.++|.+
T Consensus       353 ~~~~~~~~ll~~---~g-v~v~~g~~f~~~~----------~~~------~~~~~iRis~~-~--~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          353 YDYKFVKWMTKH---KK-LTAIPVSAFCDSK----------SKP------HFEKLVRFCFI-K--KDSTLDAAEEIFRA  408 (410)
T ss_dssp             HHHHHHHHHHHH---HS-EECEEGGGGSCTT----------THH------HHTTEEEEECC-C--CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHH---cC-EEEeCchhhCCCC----------CCC------CCCCEEEEEEc-C--CHHHHHHHHHHHHh
Confidence            112444433 32   23 6777776543210          000      01588999999 6  55555555555544

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.97  E-value=1.4e-28  Score=245.97  Aligned_cols=284  Identities=17%  Similarity=0.166  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE--------GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~--------g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..++++.||+++        ..+.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.+
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g---~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~  141 (391)
T 3h14_A           70 LPALRQRIARLYGEWYGVDLDPGRVVITPG---SSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILR-----ALGLVPVD  141 (391)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEE
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHHHEEEecC---hHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHH-----HcCCEEEE
Confidence            466777777775        3467999999   9999999999999999999999999999988775     36888888


Q ss_pred             eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC
Q 013079          173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR  237 (450)
Q Consensus       173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~~  237 (450)
                      ++.+       |+++|+++    ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+     ....
T Consensus       142 v~~~~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  217 (391)
T 3h14_A          142 LPTAPENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALE  217 (391)
T ss_dssp             EECCGGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG
T ss_pred             eecCcccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhh
Confidence            8764       77777653    7899999999999999987   88999999999999999999965442     2222


Q ss_pred             C-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079          238 L-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       238 ~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l  316 (450)
                      + +.++++.|+||.+|++|.|+ ||++.++++++.+....... ...++.+.+.++..++...+++....+++.++++.+
T Consensus       218 ~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l  295 (391)
T 3h14_A          218 LTDECYVINSFSKYFSMTGWRV-GWMVVPEDQVRVVERIAQNM-FICAPHASQVAALAALDCDAELQANLDVYKANRKLM  295 (391)
T ss_dssp             TCSSSEEEEESSSTTCCTTSCC-EEEECCGGGHHHHHHHHHHT-TCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEechhccCCcccee-EEEEeCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            2 56799999999999999998 99999999988887655421 122233333333344443344566667788899999


Q ss_pred             HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      .+.|++++.....+.                  ..+.++++.++. ......+...|...  .| +.++.|+.|..    
T Consensus       296 ~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g-i~v~~g~~~~~----  350 (391)
T 3h14_A          296 LERLPKAGFTRIAPP------------------DGAFYVYADVSDLTDDSRAFAAEILEK--AG-VAVTPGLDFDP----  350 (391)
T ss_dssp             HHHHHHHTCCCBCCC------------------CBTTEEEEECTTTCSCHHHHHHHHHHH--HC-EECEEGGGTCT----
T ss_pred             HHHHHHcCCCcccCC------------------CeeEEEEEecCccCCCHHHHHHHHHHH--CC-EEEcCchhhCC----
Confidence            999988765332221                  134578888863 22355666665431  23 67777755422    


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                      ...++.||||++ . + ++.++.+.+.|.++
T Consensus       351 ----------------~~~~~~iRis~~-~-~-~~~i~~~l~~l~~~  378 (391)
T 3h14_A          351 ----------------ERGAGTLRFSYA-R-A-TADIEEGLDRLEAF  378 (391)
T ss_dssp             ----------------TTGGGEEEEECC-S-C-HHHHHHHHHHHHHH
T ss_pred             ----------------CCCCCeEEEEec-C-C-HHHHHHHHHHHHHH
Confidence                            011478999999 6 2 34444444444443

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.97  E-value=1.3e-28  Score=245.73  Aligned_cols=216  Identities=18%  Similarity=0.250  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..++++.+|+++    |    .+.+++|+|   |++|+++++++++++||+|+++.|+|+++...+.     ..|.++..
T Consensus        69 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~  140 (388)
T 1j32_A           69 EPRLREAIAQKLQRDNGLCYGADNILVTNG---GKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVI  140 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCEEEE
Confidence            455666666665    3    357899999   9999999999999999999999999999887764     36778888


Q ss_pred             eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------cc
Q 013079          173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PA  236 (450)
Q Consensus       173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~  236 (450)
                      ++.+       |+++|++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+.      ..
T Consensus       141 v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  219 (388)
T 1j32_A          141 LPTTVETQFKVSPEQIRQAI-TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIG  219 (388)
T ss_dssp             ECCCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred             ecCCcccCCCCCHHHHHHhc-CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHH
Confidence            7753       789999999 778999999999999999965   899999999999999999999655432      11


Q ss_pred             C-----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHH
Q 013079          237 R-----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHC  310 (450)
Q Consensus       237 ~-----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~  310 (450)
                      .     .+.|+++.|+||++|++|+|+ ||++.++++++.+....... ....+.+.+.++..++.. .+++.+..+++.
T Consensus       220 ~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  297 (388)
T 1j32_A          220 AASPEAYERSVVCSGFAKTYAMTGWRV-GFLAGPVPLVKAATKIQGHS-TSNVCTFAQYGAIAAYENSQDCVQEMLAAFA  297 (388)
T ss_dssp             GSCHHHHHTEEEEEESTTTTTCTTTCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHH
T ss_pred             HccccccCCEEEEeechhccCCcccce-EEEEeCHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            1     257999999999999899998 99999999888887654421 122233333333334432 234566667788


Q ss_pred             HHHHHHHHHHHhC-CCee
Q 013079          311 HRALIFARRMKKL-GLKV  327 (450)
Q Consensus       311 ~~~~~l~~~L~~~-~~~v  327 (450)
                      ++++++.+.|+++ +..+
T Consensus       298 ~~~~~l~~~L~~~~g~~~  315 (388)
T 1j32_A          298 ERRRYMLDALNAMPGLEC  315 (388)
T ss_dssp             HHHHHHHHHHHTCTTCBC
T ss_pred             HHHHHHHHHHhhCCCCcc
Confidence            8999999999887 3343

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.97  E-value=4.9e-28  Score=240.13  Aligned_cols=280  Identities=17%  Similarity=0.206  Sum_probs=202.4

Q ss_pred             hHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...++++.+|++++        .+.+++|+|   |++|+++++.+++++||+|++++|+|+++...+.     ..|.++.
T Consensus        67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~  138 (370)
T 2z61_A           67 GILELREKISELYKDKYKADIIPDNIIITGG---SSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIR-----FLGAKPV  138 (370)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEECCC---hHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHH-----HcCCEEE
Confidence            35677888887764        367999999   9999999999999999999999999999988775     3688888


Q ss_pred             EeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-----CccC----CCCeE
Q 013079          172 FVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-----SPAR----LGADV  242 (450)
Q Consensus       172 ~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-----~~~~----~g~di  242 (450)
                      .++ .|+++|++++ ++++++|++++|+||||.+.|++ |.++|+++|+++|+|++|+.+.+     +...    .+.|+
T Consensus       139 ~v~-~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i  215 (370)
T 2z61_A          139 FCD-FTVESLEEAL-SDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTI  215 (370)
T ss_dssp             EEC-SSHHHHHHHC-CSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEE
T ss_pred             EeC-CCHHHHHHhc-ccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEE
Confidence            888 7899999999 77899999999999999999999 99999999999999999955432     2222    26799


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHH
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRM  320 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L  320 (450)
                      ++.|+||.+|++|+|+ ||+++++++++.+....... ....+.+.+.++..++..  .+++....+++.++++++.+.|
T Consensus       216 ~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L  293 (370)
T 2z61_A          216 LINGFSKLYAMTGWRI-GYVISNDEIIEAILKLQQNL-FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYV  293 (370)
T ss_dssp             EEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecChhccCCccceE-EEEEECHHHHHHHHHHHhhc-ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999899998 99999999988887655421 112222222222222221  1223445566788899999999


Q ss_pred             HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccccccccccccccc
Q 013079          321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETLMSCSGSST  399 (450)
Q Consensus       321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~-~~~~~g~i~vs~G~~~s~~~~~~~~~  399 (450)
                      ++++..+..|.                   .|.++++.++.  ....+.+.|. ..   | +.+..|+.+..        
T Consensus       294 ~~~g~~~~~~~-------------------~~~~~~~~~~~--~~~~~~~~l~~~~---g-i~v~~g~~f~~--------  340 (370)
T 2z61_A          294 KDFGWEVNNPI-------------------GAYYVFPNIGE--DGREFAYKLLKEK---F-VALTPGIGFGS--------  340 (370)
T ss_dssp             HHTTCBCCCCC-------------------BTTEECCBCSS--CHHHHHHHHHHHH---C-EECEEGGGGCG--------
T ss_pred             HHcCCeecCCC-------------------cceEEEEecCC--CHHHHHHHHHHhC---C-EEEeCchhhCC--------
Confidence            88765443221                   35577888874  2456666664 32   3 56665544311        


Q ss_pred             CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          400 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       400 ~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                   ..++.+|||++ .  +++.++.+.+.|.+
T Consensus       341 -------------~~~~~~Ri~~~-~--~~~~i~~~~~~l~~  366 (370)
T 2z61_A          341 -------------KGKNYIRISYA-N--SYENIKEGLERIKE  366 (370)
T ss_dssp             -------------GGSSBEEEECC-S--CHHHHHHHHHHHHH
T ss_pred             -------------CCCCEEEEEEe-C--CHHHHHHHHHHHHH
Confidence                         01478999999 5  33444444444443

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.97  E-value=2.2e-28  Score=249.37  Aligned_cols=288  Identities=16%  Similarity=0.170  Sum_probs=207.3

Q ss_pred             hHHHHHHHHHHHh----CC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          100 TVLNLSRQMAALE----GT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       100 ~~~~l~~~iA~l~----g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ...++++.||+++    |.   +.+++|+|   +++|++++++.++++||+|+++.|+|+++...+.     ..|.++..
T Consensus       119 g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G---~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~  190 (448)
T 3aow_A          119 GFTPLRETLMKWLGKRYGISQDNDIMITSG---SQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFN-----FYEPQYIQ  190 (448)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCTTSEEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCcCChhhEEEeCc---HHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHH-----HcCCEEEE
Confidence            4567888888887    75   67999999   9999999999999999999999999999988775     36777777


Q ss_pred             eCCC----CHHHHHHhhhc----C--CceEEE-EecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC----
Q 013079          173 VDIS----DHEMVNSAIVQ----G--RTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS----  234 (450)
Q Consensus       173 v~~~----d~~~l~~ai~~----~--~t~lv~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~----  234 (450)
                      ++.+    |+++|++++ +    +  ++++|+ +++++||||.+.+   +++|.++|+++|+++|+|++|+.+.+.    
T Consensus       191 v~~~~~g~d~~~L~~~l-~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~  269 (448)
T 3aow_A          191 IPLDDEGMKVEILEEKL-KELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPE  269 (448)
T ss_dssp             EEEETTEECHHHHHHHH-HHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCC
T ss_pred             eccCCCCCCHHHHHHHH-hhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCC
Confidence            7653    899999998 4    4  789985 6899999999986   569999999999999999999555331    


Q ss_pred             --ccCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC---CcHHHHH
Q 013079          235 --PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRM  306 (450)
Q Consensus       235 --~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~  306 (450)
                        ...+   +.++++.|+||.++ +|+|+ ||+++++++++.+....... ....+.+.+.++..++...   +++....
T Consensus       270 ~~~~~~~~~~~vi~~~S~SK~~~-~Glri-G~v~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~  346 (448)
T 3aow_A          270 KKIKALDNEGRVIYLGTFSKILA-PGFRI-GWMVGDPGIIRKMEIAKQST-DLCTNVFGQVVAWRYVDGGYLEKHIPEIR  346 (448)
T ss_dssp             CCTGGGCTTSCEEEEEESTTTTC-GGGCC-EEEEECHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             cCHHhcCCCCCEEEEccchhhcc-ccccE-EEEEeCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence              1122   57899999999999 89998 99999999998887655422 1233444455544444432   2344555


Q ss_pred             HHHHHHHHHHHHHHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079          307 KEHCHRALIFARRMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV  383 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v  383 (450)
                      +++.++++.+.+.|+++   +..+..|.                   .|.++++.++...+...+...|...   | +.+
T Consensus       347 ~~~~~~~~~l~~~L~~~~~~g~~~~~p~-------------------~g~~~~v~~~~~~~~~~l~~~l~~~---g-V~v  403 (448)
T 3aow_A          347 KFYKPRRDAMLEALEEFMPEGVKWTKPE-------------------GGMFIWVTLPDGIDSKKMLERAIKK---G-VAY  403 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTCEECCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHT---T-EEC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEeCCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-cEE
Confidence            66778899999999874   34444332                   4678999997422245677666542   3 566


Q ss_pred             ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013079          384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM  442 (450)
Q Consensus       384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~  442 (450)
                      ..|+.+...                   +..++.||||++ ..   ++++.++.|.+++++.
T Consensus       404 ~pg~~f~~~-------------------~~~~~~iRls~~-~~~~e~i~~~~~~L~~~l~~~  445 (448)
T 3aow_A          404 VPGEAFYAH-------------------RDVKNTMRLNFT-YVDEDKIMEGIKRLAETIKEE  445 (448)
T ss_dssp             EEGGGGSTT-------------------CCCCSEEEEECS-SSCTHHHHHHHHHHHHHHHHH
T ss_pred             EcchhhcCC-------------------CCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHHHH
Confidence            655432110                   112578999999 53   3445555555555543

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.97  E-value=4.2e-28  Score=244.28  Aligned_cols=272  Identities=15%  Similarity=0.097  Sum_probs=198.6

Q ss_pred             hhHHHHHHHHHHHh----CC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALE----GT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~----g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      +...++++.+|+++    |.     +.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.+
T Consensus        75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g---~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~  146 (412)
T 2x5d_A           75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG---SKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAV-----IAGAQ  146 (412)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HHTCE
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCE
Confidence            34567888888887    63     47999999   9999999999999999999999999999988775     25777


Q ss_pred             EEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------
Q 013079          170 TTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------  233 (450)
Q Consensus       170 v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------  233 (450)
                      +..++.+       |+++|++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+      
T Consensus       147 ~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~  225 (412)
T 2x5d_A          147 VRSVPLVPGIDFFNELERAIRES-IPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAP  225 (412)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHTE-ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred             EEEeecCCccCCCCCHHHHHHhc-ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCC
Confidence            7777653       468888888 678999999999999999976   68899999999999999999955432      


Q ss_pred             CccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHH
Q 013079          234 SPAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKE  308 (450)
Q Consensus       234 ~~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~  308 (450)
                      +...    .+.|+++.|+||++|++|+|+ ||+++++++++.+...... ....++.+.+.++..++... +++....++
T Consensus       226 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  303 (412)
T 2x5d_A          226 SIMQVPGAKDIAVEFFTLSKSYNMAGWRI-GFMVGNPELVSALARIKSY-HDYGTFTPLQVAAIAALEGDQQCVRDIARQ  303 (412)
T ss_dssp             CGGGSTTGGGTEEEEEECC-CCSCTTSCC-EEEEECHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred             ChhhccCccCcEEEEecCccccCCcccce-EEEEcCHHHHHHHHHHHhh-hccCCCHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            1222    267899999999999899998 9999999998888765442 11233344444444444432 345666677


Q ss_pred             HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH---HHHHHHHHhhcccccccccccc
Q 013079          309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE---KANRLMNYLQNYAQFGFMAVSL  385 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~---~~~~~~~~l~~~~~~g~i~vs~  385 (450)
                      +.++++++.+.|++++..+..|                   ..|.++++.++...   ....+...|..  +.| +.+..
T Consensus       304 ~~~~~~~l~~~L~~~g~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~  361 (412)
T 2x5d_A          304 YQQRRDVLVKGLREAGWMVENP-------------------KASMYVWAKIPEPYAHLGSLEFAKKLLQ--DAK-VSVSP  361 (412)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCC-------------------SBSSEEEEECCTTTGGGCHHHHHHHHHH--HHC-EECEE
T ss_pred             HHHHHHHHHHHHHHCCCEecCC-------------------CeeeEEEEEcCCccCCCCHHHHHHHHHH--HCC-EEEeC
Confidence            8889999999998875544322                   13557889986321   24567666632  123 56666


Q ss_pred             ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       386 G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                      |+.+..                     ..++.||||++ .
T Consensus       362 g~~f~~---------------------~~~~~iRis~~-~  379 (412)
T 2x5d_A          362 GIGFGD---------------------YGDDHVRFALI-E  379 (412)
T ss_dssp             GGGGCG---------------------GGTTEEEEECC-S
T ss_pred             chhhCC---------------------CCCCeEEEEec-C
Confidence            644311                     01478999999 6

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.97  E-value=8.3e-29  Score=246.22  Aligned_cols=284  Identities=19%  Similarity=0.158  Sum_probs=205.7

Q ss_pred             hhHHHHHHHHHHHh----CC----C-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALE----GT----E-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~----g~----~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      +...++++.+|+++    |.    + .+++|+|   +++|+++++++++++||+|+++.|+|+++...+.     ..|.+
T Consensus        63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g---~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~  134 (376)
T 2dou_A           63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIG---SQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAAR-----VASLR  134 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS---HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HTTCE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC---cHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHH-----HcCCE
Confidence            46788999999987    75    3 7999999   9999999999999999999999999999988775     25778


Q ss_pred             EEEeCC-----CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc
Q 013079          170 TTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA  236 (450)
Q Consensus       170 v~~v~~-----~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~  236 (450)
                      +..++.     .|++++++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+     +..
T Consensus       135 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~  213 (376)
T 2dou_A          135 TFLIPLREDGLADLKAVPEGV-WREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPL  213 (376)
T ss_dssp             EEEECBCTTSSBCGGGSCHHH-HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGG
T ss_pred             EEEeeCCCCCCCCHHHHHHhh-ccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh
Confidence            888775     3778888888 678999999999999999986   67899999999999999999954432     222


Q ss_pred             CC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHHHH
Q 013079          237 RL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCH  311 (450)
Q Consensus       237 ~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~  311 (450)
                      .+    +.++++.|+||.+|++|.|+ ||+++++++++.+....... ....+.+.+.++..++... +++....+++.+
T Consensus       214 ~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  291 (376)
T 2dou_A          214 ALPGAKERVVELFSLSKSYNLAGFRL-GFALGSEEALARLERVKGVI-DFNQYAGVLRMGVEALKTPKEVVRGYARVYRE  291 (376)
T ss_dssp             GSTTGGGTEEEEEEHHHHHTCGGGCC-EEEEECHHHHHHHHHHHHHH-CCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             hcCCCCCcEEEEecchhhcCChhhee-EEEecCHHHHHHHHHHHHhc-ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            22    57899999999999899998 99999999998887655421 1223334444444444432 234555666788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      +++.+.+.|+++ ..+..|                   ..|.++++.++.......+.+.|...   | +.+..|+.+..
T Consensus       292 ~~~~l~~~L~~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~f~~  347 (376)
T 2dou_A          292 RALGMAEALKGV-LSLLPP-------------------RATMYLWGRLPEGVDDLEFGLRLVER---G-VALAPGRGFGP  347 (376)
T ss_dssp             HHHHHHHHHTTT-SEECCC-------------------CBSSEEEEECCTTCCHHHHHHHHHHT---T-EECEEGGGGCG
T ss_pred             HHHHHHHHHHHh-cCccCC-------------------CeeEEEEEECCCCCCHHHHHHHHHHC---C-EEEcCchhhCC
Confidence            899999999887 544322                   13557889997422245666666542   3 56665544311


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                           ..++.||||++ .  +++.++.+.+.|.+
T Consensus       348 ---------------------~~~~~~Ris~~-~--~~~~i~~~l~~l~~  373 (376)
T 2dou_A          348 ---------------------GGKGFVRIALV-R--PLEELLEAAKRIRE  373 (376)
T ss_dssp             ---------------------GGTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred             ---------------------CCCCeEEEEec-C--CHHHHHHHHHHHHH
Confidence                                 01478999999 6  34444544444443

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.97  E-value=3.9e-28  Score=241.75  Aligned_cols=282  Identities=17%  Similarity=0.179  Sum_probs=206.4

Q ss_pred             hHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-
Q 013079          100 TVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-  176 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-  176 (450)
                      ...++++.||++++.  +.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++..++.+ 
T Consensus        62 ~~~~l~~~la~~~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~  133 (381)
T 1v2d_A           62 GLPALREALAEEFAVEPESVVVTSG---ATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAF-----LAGAKARLVRLDL  133 (381)
T ss_dssp             CCHHHHHHHHHHHTSCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEE
T ss_pred             CCHHHHHHHHHhcCCChhhEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEEEEeCCC
Confidence            467899999999986  46999999   9999999999999999999999999999887764     257777777653 


Q ss_pred             -------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc--CCC
Q 013079          177 -------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA--RLG  239 (450)
Q Consensus       177 -------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~--~~g  239 (450)
                             |+++|++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+     +..  ..+
T Consensus       134 ~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~  212 (381)
T 1v2d_A          134 TPEGFRLDLSALEKAL-TPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPE  212 (381)
T ss_dssp             ETTEEECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTT
T ss_pred             CCccCCcCHHHHHHhc-CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCC
Confidence                   899999999 788999999999999999976   88999999999999999999965432     122  237


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-c--CCcHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-R--IPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~--~~~l~~~~~~~~~~~~~l  316 (450)
                      +|+++.|+||.++++|+|+ ||++.++++++.+...... .....+.+.+.++..++. .  .+++....+++.++++++
T Consensus       213 ~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l  290 (381)
T 1v2d_A          213 RTFTVGSAGKRLEATGYRV-GWIVGPKEFMPRLAGMRQW-TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLL  290 (381)
T ss_dssp             TEEEEEEHHHHTTCGGGCC-EEEECCTTTHHHHHHHHHH-HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeechhhcCCcccce-EEEEeCHHHHHHHHHHHhh-cccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence            8999999999999899998 9999998888887665441 112333344444433433 2  344666677788999999


Q ss_pred             HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccc
Q 013079          317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG  396 (450)
Q Consensus       317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~  396 (450)
                      .+.|++.+..+..|.                   .|.++++.++..+    +...+..   .| +.+..|+.+...    
T Consensus       291 ~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~----~~~~l~~---~g-i~v~~g~~~~~~----  339 (381)
T 1v2d_A          291 AGGLRAMGLRVYVPE-------------------GTYFLMAELPGWD----AFRLVEE---AR-VALIPASAFYLE----  339 (381)
T ss_dssp             HHHHHHTTCCEECCS-------------------BSSEEEEECTTCC----HHHHHHH---TC-EECEEGGGGCSS----
T ss_pred             HHHHHHCCCEecCCC-------------------cceEEEEecChHh----HHHHHHh---CC-EEEecchHhCCC----
Confidence            999998766654332                   3558889887432    3333332   23 455555433110    


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          397 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                     ...++.||||++ .  +++.++.+.+.|.+
T Consensus       340 ---------------~~~~~~iRi~~~-~--~~~~i~~~~~~l~~  366 (381)
T 1v2d_A          340 ---------------DPPKDLFRFAFC-K--TEEELHLALERLGR  366 (381)
T ss_dssp             ---------------SCCTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred             ---------------CCCCCEEEEEeC-C--CHHHHHHHHHHHHH
Confidence                           012578999999 6  34444444444443

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.96  E-value=4.6e-29  Score=247.13  Aligned_cols=294  Identities=15%  Similarity=0.132  Sum_probs=209.1

Q ss_pred             ccccCCCChhHHHHHHH-HHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           91 FIYSRHFNPTVLNLSRQ-MAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~-iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      |.+++...+...++++. +|+++|.+.+++|+|   |++|+.+++.+++++||+|+++.++|+++...+.     ..|.+
T Consensus        45 ~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~  116 (371)
T 2e7j_A           45 GRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNG---AREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLN  116 (371)
T ss_dssp             --------CCHHHHHHTHHHHHTTSSEEEEESS---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCE
T ss_pred             ccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCC---hHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHH-----HcCCe
Confidence            44556677889999999 999999888899999   9999999999999999999999999999988764     36888


Q ss_pred             EEEeC--CC-----CHHHHHHhhhc-----CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC--CCc
Q 013079          170 TTFVD--IS-----DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV--LSP  235 (450)
Q Consensus       170 v~~v~--~~-----d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~--~~~  235 (450)
                      +.+++  .+     |+++|++++ +     +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+...  .+.
T Consensus       117 ~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~  195 (371)
T 2e7j_A          117 IALVPKTDYPDYAITPENFAQTI-EETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSL  195 (371)
T ss_dssp             EEEECCCCTTTCCCCHHHHHHHH-HHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCH
T ss_pred             EEEeecccCCCCCcCHHHHHHHH-HhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCCh
Confidence            98888  65     899999999 5     689999999999999999999999999999999999999994432  334


Q ss_pred             cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHH-HHHHhhhhhhc----cCC-CchHHHHHHHHccCCcHH-HHHHH
Q 013079          236 ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-MMDLHQGALML----LGP-TMNPKVAFELSERIPHLG-LRMKE  308 (450)
Q Consensus       236 ~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~-l~~~~~~~~~~----~g~-~~~~~~a~~~~~~~~~l~-~~~~~  308 (450)
                      ..+++|+++.|+||++++++ ++ |+++.++++++. +.....+....    .+. ...+..+...  .++.+. ...++
T Consensus       196 ~~~~~di~~~s~sK~~~~~~-~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~l~~~~~~~~~~  271 (371)
T 2e7j_A          196 KEIGADFIVGSGHKSMAASG-PI-GVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMA--SFPHVRERIKRW  271 (371)
T ss_dssp             HHHTCSEEEEEHHHHSSCCS-SC-EEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHH--HHHHHHHHGGGH
T ss_pred             hhcCCCEEEecCCcCCCCCC-Cc-EEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHH--HHHHHHHHHHHH
Confidence            44578999999999888654 66 999988877666 54332211110    222 2222222211  122222 33445


Q ss_pred             H--HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079          309 H--CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       309 ~--~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      .  .++++++.+.|++++..+..|..                 +.+++++|.++   ....+.+.|..   .| +.+.. 
T Consensus       272 ~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~l~~---~g-i~~~~-  326 (371)
T 2e7j_A          272 DEEVEKARRFAAEMEKLGIKQLGDNP-----------------HNHDLMFFHAE---VLYEISKKAKG---GR-FFLYR-  326 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEESSSS-----------------CCSSEEEEECH---HHHHHHHHSSS---GG-GHHHH-
T ss_pred             HHHHHHHHHHHHHHHHcCcEEecCCC-----------------ccCceEEEECC---CHHHHHHHHHH---CC-EEEEe-
Confidence            6  78888999999888666554320                 13568999986   35677777764   23 33221 


Q ss_pred             cccccccccccccCCCCCHHHHHhc---CCCCCeEE-EEeCCCC-CHHHHHHHHHHHHHHhh
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALA---GISAGLVR-MSVGYLG-TLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~---g~~~~~iR-iS~g~~~-~~~~~i~~l~~al~~~~  443 (450)
                      ..                    ...   |..++.|| ||++ .. .+++.++.+.++|.++.
T Consensus       327 ~~--------------------~~~~~~g~~~~~iRii~~~-~~~~~~~~i~~~~~~l~~~~  367 (371)
T 2e7j_A          327 EL--------------------KSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEII  367 (371)
T ss_dssp             HH--------------------HHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHH
T ss_pred             cc--------------------ccccccCCCCCceEEEEee-ccCCCHHHHHHHHHHHHHHH
Confidence            00                    011   33368899 9999 76 67777778777777654

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.96  E-value=2.5e-28  Score=243.56  Aligned_cols=285  Identities=15%  Similarity=0.134  Sum_probs=204.1

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++++.+|+++    |    .+ .+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.
T Consensus        69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~  140 (386)
T 1u08_A           69 VQALREAIAQKTERLYGYQPDADSDITVTAG---ATEALYAAITALVRNGDEVICFDPSYDSYAPAIA-----LSGGIVK  140 (386)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCC---hHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHH-----HcCCEEE
Confidence            456667777663    5    35 8999999   9999999999999999999999999999888764     3577777


Q ss_pred             EeCC------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------Ccc
Q 013079          172 FVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SPA  236 (450)
Q Consensus       172 ~v~~------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------~~~  236 (450)
                      .++.      .|+++|++++ ++++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|+.+.+      +..
T Consensus       141 ~v~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~  219 (386)
T 1u08_A          141 RMALQPPHFRVDWQEFAALL-SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVL  219 (386)
T ss_dssp             EEECCTTTCCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGG
T ss_pred             EeecCcccCcCCHHHHHHhh-cccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChh
Confidence            7765      3799999999 788999999999999999986   68999999999999999999965432      111


Q ss_pred             C----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHH
Q 013079          237 R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH  311 (450)
Q Consensus       237 ~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~  311 (450)
                      .    .+.|+++.|+||.++++|+|+ ||++.++++++.+....... ....+.+.+.++..++.. .+++....+++.+
T Consensus       220 ~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  297 (386)
T 1u08_A          220 AHPQLRERAVAVSSFGKTYHMTGWKV-GYCVAPAPISAEIRKVHQYL-TFSVNTPAQLALADMLRAEPEHYLALPDFYRQ  297 (386)
T ss_dssp             GSHHHHTTEEEEEEHHHHTTCGGGCC-EEEECCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHH
T ss_pred             cccCccCcEEEEecchhhcCCcccce-EEEEcCHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            2    368999999999999999998 99999999888887654311 123333444444344433 2345556667788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      +++++.+.|++++..+..|.                   .|.++++.++..  .....+.+.|..  ..| +.+..|+.+
T Consensus       298 ~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~~f  355 (386)
T 1u08_A          298 KRDILVNALNESRLEILPCE-------------------GTYFLLVDYSAVSTLDDVEFCQWLTQ--EHG-VAAIPLSVF  355 (386)
T ss_dssp             HHHHHHHHTTSSSCEECCCC-------------------BSSEEEEECTTTCCSCHHHHHHHHHH--HSC-EECEEGGGG
T ss_pred             HHHHHHHHHHHCCCeecCCC-------------------ceEEEEEecCCCCCCCHHHHHHHHHH--hCC-EEEeCchHh
Confidence            89999999988766554332                   356899998742  124566665532  123 555555332


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      ...                   ...++.||||++ .  +++.++.+.+.|.
T Consensus       356 ~~~-------------------~~~~~~iRis~~-~--~~~~i~~~~~~l~  384 (386)
T 1u08_A          356 CAD-------------------PFPHKLIRLCFA-K--KESTLLAAAERLR  384 (386)
T ss_dssp             CSS-------------------CCCSCEEEEECC-S--CHHHHHHHHHHHT
T ss_pred             CCC-------------------CCCCCEEEEEEc-C--CHHHHHHHHHHHh
Confidence            110                   012578999999 5  3555555554443

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.96  E-value=5.6e-28  Score=241.69  Aligned_cols=289  Identities=12%  Similarity=0.079  Sum_probs=203.1

Q ss_pred             hHHHHHHHHHHHhC-----CC-eEEEecChHHHHHHHHHHHHHhccCC-----CEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079          100 TVLNLSRQMAALEG-----TE-AAYCTASDKAGMSAISSVLMQLCSSG-----GHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus       100 ~~~~l~~~iA~l~g-----~~-~~~~tsg~~~gt~ai~~al~~l~~~g-----d~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      ..+.+.+.+++.+|     .+ .+++|+|   +++|+++++++++++|     |+|+++.|.|+++...+.     ..|.
T Consensus        71 lr~~la~~l~~~~g~~~~~~~~~i~~t~g---~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~-----~~g~  142 (396)
T 3jtx_A           71 LRQACANWLKRRYDGLTVDADNEILPVLG---SREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATL-----LGGG  142 (396)
T ss_dssp             HHHHHHHHHHHHTTTCCCCTTTSEEEESS---HHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHH-----HTTC
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCeEEEcCC---cHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHH-----HcCC
Confidence            33444444444445     45 8999999   9999999999999996     799999999999988765     3677


Q ss_pred             eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCCc---c
Q 013079          169 TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLSP---A  236 (450)
Q Consensus       169 ~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~~---~  236 (450)
                      ++.+++.+      |+++|++++ ++++++|++++|+||||.+.+.+   +|+++|+++|+++|+|++|..+.+..   .
T Consensus       143 ~~~~v~~~~~g~~~d~~~l~~~~-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~  221 (396)
T 3jtx_A          143 EIHFANCPAPSFNPDWRSISEEV-WKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPL  221 (396)
T ss_dssp             EEEEEECCTTTCCCCGGGSCHHH-HHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCC
T ss_pred             EEEEeecCCCCCccCHHHHHHhh-ccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence            88887753      778888888 66899999999999999998755   59999999999999999996554321   1


Q ss_pred             -----------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHH
Q 013079          237 -----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR  305 (450)
Q Consensus       237 -----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~  305 (450)
                                 ..+.++++.|+||.++++|.|+ ||++.++++++.+...... .....+.+.+.++..++...+++...
T Consensus       222 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~  299 (396)
T 3jtx_A          222 GCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRS-GFVAGDAELLKNFLLYRTY-HGSAMSIPVQRASIAAWDDEQHVIDN  299 (396)
T ss_dssp             CHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCC-EEEEECHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHCCHHHHHH
T ss_pred             hHHhhhhhcccccCcEEEEeccccccCCcccce-EEEEeCHHHHHHHHHHHhh-cccCCCHHHHHHHHHHhCCHHHHHHH
Confidence                       2578899999999999999998 9999999999888765541 11223334444444444444556666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccc
Q 013079          306 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSL  385 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~  385 (450)
                      .+++.++++.+.+.|+++ ..+..|                   ..|.++++.++.. ....+...|..  ..| +.++.
T Consensus       300 ~~~~~~~~~~l~~~l~~~-~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~~l~~--~~g-i~v~~  355 (396)
T 3jtx_A          300 RRLYQEKFERVIPILQQV-FDVKLP-------------------DASFYIWLKVPDG-DDLAFARNLWQ--KAA-IQVLP  355 (396)
T ss_dssp             HHHHHHHHHHHHHHHTTT-SCCCCC-------------------SSSSEEEEECTTS-CHHHHHHHHHH--HHC-EECEE
T ss_pred             HHHHHHHHHHHHHHHHhc-CCccCC-------------------CeeEEEEEECCCC-CHHHHHHHHHH--HCC-EEEeC
Confidence            777888889999999765 222222                   2466899999852 24456665522  123 67777


Q ss_pred             ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       386 G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      |+.+......               .+...+.||||++ .  +++.++.+.+.|.+
T Consensus       356 g~~~~~~~~~---------------~~~~~~~iRis~~-~--~~~~i~~~l~~l~~  393 (396)
T 3jtx_A          356 GRFLARDTEQ---------------GNPGEGYVRIALV-A--DVATCVKAAEDIVS  393 (396)
T ss_dssp             GGGGCCCCTT---------------CCTTTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred             ChHhCCcccc---------------cCCCCCeEEEEEc-C--CHHHHHHHHHHHHH
Confidence            7665331100               0123589999999 6  34445555454443

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.96  E-value=1.6e-28  Score=245.42  Aligned_cols=296  Identities=15%  Similarity=0.138  Sum_probs=210.7

Q ss_pred             ccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh--HHHHHHHhCCCccC
Q 013079           93 YSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACN  167 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g  167 (450)
                      |+....+..+++++.+++++|.+   .+++|+|   |++|+++++.+++++||+|+++.|+|++  +...+.     ..|
T Consensus        61 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g---~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-----~~g  132 (393)
T 1vjo_A           61 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGT---GTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG-----RYG  132 (393)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTT
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCc---hHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHH-----HcC
Confidence            44333467889999999999874   6899999   9999999999999999999999999998  665553     267


Q ss_pred             eeEEEeCC-----CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCC
Q 013079          168 ITTTFVDI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLG  239 (450)
Q Consensus       168 ~~v~~v~~-----~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g  239 (450)
                      .++.+++.     .|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+  ....+....+
T Consensus       133 ~~~~~v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~  211 (393)
T 1vjo_A          133 ADVRTISKPWGEVFSLEELRTAL-ETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWG  211 (393)
T ss_dssp             CEEEEEECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTT
T ss_pred             CceEEEecCCCCCCCHHHHHHHH-hhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccC
Confidence            88888875     3899999999 66 89999999999999999999999999999999999999984  2223333457


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh---hhh-------------hhcc--C-CCchHHHHHHHHccC-
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH---QGA-------------LMLL--G-PTMNPKVAFELSERI-  299 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~---~~~-------------~~~~--g-~~~~~~~a~~~~~~~-  299 (450)
                      +|+++.|+||++++++ ++ |+++.++++++.+....   ...             ....  + +.+.+.++..++... 
T Consensus       212 ~di~~~s~sK~l~~~~-~~-G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~  289 (393)
T 1vjo_A          212 VDLAYSCSQKGLGCSP-GA-SPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA  289 (393)
T ss_dssp             CSEEECCSSSTTCSCS-SC-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred             ccEEEEcCcccccCCC-ce-EEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            8999999999998777 67 99999998887764320   000             0111  1 112222222333222 


Q ss_pred             -CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079          300 -PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF  378 (450)
Q Consensus       300 -~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~  378 (450)
                       ..+....+++.++++++.+.|++++.++..|.               . +..+.+++|.++.......+.+.|...  +
T Consensus       290 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~  351 (393)
T 1vjo_A          290 QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEK---------------E-YRLPTLTTVCIPDGVDGKAVARRLLNE--H  351 (393)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG---------------G-GBCSSEEEEECCTTCCHHHHHHHHHHH--H
T ss_pred             HccHHHHHHHHHHHHHHHHHHHHHcCCcccCCc---------------c-ccCCcEEEEEcCCCCCHHHHHHHHHhh--C
Confidence             12455667788999999999998765544332               0 013568899886322355677776542  2


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHh
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~  442 (450)
                      | +.+..|+.+.                       .++.+||| ++ ..+.++.++.+.++|.++
T Consensus       352 g-i~v~~g~~~~-----------------------~~~~iRis~~~-~~~~~~~i~~~~~~l~~~  391 (393)
T 1vjo_A          352 N-IEVGGGLGEL-----------------------AGKVWRVGLMG-FNSRKESVDQLIPALEQV  391 (393)
T ss_dssp             C-EECEECCGGG-----------------------TTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred             C-EEEecCcccc-----------------------CCCEEEEeCCc-cCChHHHHHHHHHHHHHH
Confidence            3 5666654321                       14789999 56 556666677776666654

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.96  E-value=2.9e-28  Score=243.25  Aligned_cols=283  Identities=16%  Similarity=0.177  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHHh----C----CCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++++.+|+++    |    .+. +++|+|   |++|+.+++.+++++||+|+++.|+|+++...+.     ..|.++.
T Consensus        65 ~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~  136 (389)
T 1gd9_A           65 LLELREAIAEKLKKQNGIEADPKTEIMVLLG---ANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPV  136 (389)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEESS---TTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HCCCEEE
Confidence            456777777776    6    357 999999   9999999999999999999999999999987765     2577777


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------Cc
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SP  235 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------~~  235 (450)
                      .++.+       |+++|++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+      +.
T Consensus       137 ~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~  215 (389)
T 1gd9_A          137 EVPTYEEDEFRLNVDELKKYV-TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSI  215 (389)
T ss_dssp             EEECCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCG
T ss_pred             EeccCCccCCCCCHHHHHHhc-CcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCH
Confidence            77642       789999999 778999999999999999974   89999999999999999999955433      12


Q ss_pred             cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC---cHHHHHHH
Q 013079          236 AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP---HLGLRMKE  308 (450)
Q Consensus       236 ~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~  308 (450)
                      ..    .++|+++.|+||.+|++|+|+ ||+++++++++.+....... ....+.+.+.++..++....   ++....++
T Consensus       216 ~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~  293 (389)
T 1gd9_A          216 ASLDGMFERTITVNGFSKTFAMTGWRL-GFVAAPSWIIERMVKFQMYN-ATCPVTFIQYAAAKALKDERSWKAVEEMRKE  293 (389)
T ss_dssp             GGSTTCGGGEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHTTT-TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhccCCCCCEEEEecChhhcCCcccce-EEEEECHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            22    257999999999999999998 99999999988887655421 12233333434333433222   34555566


Q ss_pred             HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhh-ccccccccccccc
Q 013079          309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQ-NYAQFGFMAVSLG  386 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~-~~~~~g~i~vs~G  386 (450)
                      +.++++++.+.|++++..+..|.                   .|.++++.++. ......+.+.|. .   .| +.+..|
T Consensus       294 ~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i~v~~g  350 (389)
T 1gd9_A          294 YDRRRKLVWKRLNEMGLPTVKPK-------------------GAFYIFPRIRDTGLTSKKFSELMLKE---AR-VAVVPG  350 (389)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC-------------------BTTEECCBCGGGTCCHHHHHHHHHHH---TC-EECEEG
T ss_pred             HHHHHHHHHHHHHHcCCeecCCC-------------------eeeEEEEeccCCCCCHHHHHHHHHHh---CC-EEEeCc
Confidence            78889999999998765443221                   34567777752 112456666664 3   23 555555


Q ss_pred             cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      +.+..                     ..++.||||++ . + ++.++.+.+.|.+
T Consensus       351 ~~~~~---------------------~~~~~iRi~~~-~-~-~~~i~~~l~~l~~  381 (389)
T 1gd9_A          351 SAFGK---------------------AGEGYVRISYA-T-A-YEKLEEAMDRMER  381 (389)
T ss_dssp             GGGCG---------------------GGTTBEEEECC-S-C-HHHHHHHHHHHHH
T ss_pred             hhhCC---------------------CCCCeEEEEec-C-C-HHHHHHHHHHHHH
Confidence            43210                     01478999999 6 3 3444444444443

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.96  E-value=5.7e-28  Score=241.98  Aligned_cols=288  Identities=12%  Similarity=0.070  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..++++.+|+++    |    .+.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++..
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g---~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~  139 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAG---VVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIE  139 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEe
Confidence            566777777763    5    457999999   9999999999999999999999999999987775     36777777


Q ss_pred             eCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC------Cc
Q 013079          173 VDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL------SP  235 (450)
Q Consensus       173 v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~------~~  235 (450)
                      ++.        .|+++|++++.++++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|+.+.+      +.
T Consensus       140 ~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~  219 (399)
T 1c7n_A          140 CELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVF  219 (399)
T ss_dssp             CCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCG
T ss_pred             cccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccH
Confidence            765        37999999993378999999999999999988   99999999999999999999955432      12


Q ss_pred             cC-----CCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHH
Q 013079          236 AR-----LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKE  308 (450)
Q Consensus       236 ~~-----~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~  308 (450)
                      ..     .+.++++.|+||.+|++|.|+ ||++.+ +++++.+............+.+.+.++..++.. .+++....++
T Consensus       220 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  298 (399)
T 1c7n_A          220 QSIDEQLADKTITFTAPSKTFNIAGMGM-SNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKV  298 (399)
T ss_dssp             GGSCHHHHTTEEEEECSHHHHTCGGGCC-EEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHcCccccCcEEEEEeChhhccccchhe-EEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHH
Confidence            22     246799999999999899998 999886 678888876554221112233333333333332 2345555666


Q ss_pred             HHHHHHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh-ccccccccccc
Q 013079          309 HCHRALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ-NYAQFGFMAVS  384 (450)
Q Consensus       309 ~~~~~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~-~~~~~g~i~vs  384 (450)
                      +.++++++.+.|++ ++ ..+..|                   ..+.++++.++.. .....+.+.|. .   .| +.+.
T Consensus       299 ~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---~g-i~v~  355 (399)
T 1c7n_A          299 IDKNQRIVKDFFEVNHPEIKAPLI-------------------EGTYLQWIDFRALKMDHKAMEEFMIHK---AQ-IFFD  355 (399)
T ss_dssp             HHHHHHHHHHHHHHHCTTSBCCCC-------------------SBSSEEEEECGGGCCCHHHHHHHHHHT---TC-CCCE
T ss_pred             HHHHHHHHHHHHHhhCCCCeEecC-------------------CceEEEEEEcccCCCCHHHHHHHHHHh---CC-EEEe
Confidence            78889999999987 53 333222                   1344667888631 12456777764 3   23 5666


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSRM  442 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~~  442 (450)
                      .|+.+..                     ..++.||||++ ..  ++++.++.|.++++++
T Consensus       356 ~g~~~~~---------------------~~~~~iRis~~-~~~~~l~~~l~~l~~~l~~~  393 (399)
T 1c7n_A          356 EGYIFGD---------------------GGIGFERINLA-APSSVIQESLERLNKALKDL  393 (399)
T ss_dssp             EGGGGCG---------------------GGTTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCC---------------------CCCCeEEEEec-cCHHHHHHHHHHHHHHHHHH
Confidence            6644321                     01478999999 64  2333344455555444

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.96  E-value=9.7e-29  Score=250.57  Aligned_cols=292  Identities=14%  Similarity=0.117  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhc--cCCC--EEEEeCCCchhHHHHHHHhCCCccCe
Q 013079          101 VLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLC--SSGG--HVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus       101 ~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~--~~gd--~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      ..++++.+|++++        .+.+++|+|   |++|+++++.+++  ++||  +|+++.|+|+++...+.     ..|.
T Consensus        84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g---~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-----~~g~  155 (437)
T 3g0t_A           84 LPELKQEASRFAKLFVNIDIPARACVPTVG---SMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-----ILGQ  155 (437)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-----HHTC
T ss_pred             hHHHHHHHHHHHHHhhCCCCCcccEEEeCC---HHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-----HcCC
Confidence            4678888888876        467999999   9999999999998  9999  99999999999988775     2577


Q ss_pred             eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---c-
Q 013079          169 TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---P-  235 (450)
Q Consensus       169 ~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---~-  235 (450)
                      ++.+++.+      |+++|+++++++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+.   + 
T Consensus       156 ~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~  235 (437)
T 3g0t_A          156 KFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSH  235 (437)
T ss_dssp             CCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCS
T ss_pred             EEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCc
Confidence            77777653      7899999985578999999999999999987   777899999999999999999543321   1 


Q ss_pred             -------c----CCCCeEEEeCCCCccccCccceEEEEEcCHHHHH-H-----------------HHHHhhhhhhccCCC
Q 013079          236 -------A----RLGADVVVHSISKFISGGADIIAGAVCGPANLVN-S-----------------MMDLHQGALMLLGPT  286 (450)
Q Consensus       236 -------~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~-----------------l~~~~~~~~~~~g~~  286 (450)
                             .    ..+.++++.|+||.++++|.|+ ||++.++++++ .                 +..... ......+.
T Consensus       236 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  313 (437)
T 3g0t_A          236 PGEPLYQPSVANYTDNYILALSSSKAFSYAGQRI-GVLMISGKLYEREYPDLEESFGRLRFGEALSSSALY-ALSSGATH  313 (437)
T ss_dssp             TTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCC-EEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHH-HHHSSSCH
T ss_pred             ccccchhhccCCCCCcEEEEEcCccCCCCcccee-EEEEECHHHhhhhhhcccccccccchhHHHHHHHHh-hhcCCCCH
Confidence                   1    1467899999999999999998 99999988887 6                 543332 11123334


Q ss_pred             chHHHHHHHHccCCc----HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079          287 MNPKVAFELSERIPH----LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE  362 (450)
Q Consensus       287 ~~~~~a~~~~~~~~~----l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~  362 (450)
                      +.+.++..++.....    +..+.+++.++++.+.+.|++++..+..+.-...|.            ..|.++++.+++.
T Consensus       314 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~~~  381 (437)
T 3g0t_A          314 SAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPL------------ADGFYFTVGYKGM  381 (437)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEEC------------CSSSEEEEEETTC
T ss_pred             HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCC------------ceeEEEEEecCCC
Confidence            444444444433222    677778889999999999998865554110000010            2466899999732


Q ss_pred             HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       363 ~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                       ....+.+.|...   | +.+..|+.+..                     ..++.||||++ .. +++.++.+.++|.++
T Consensus       382 -~~~~l~~~L~~~---g-i~v~~~~~~~~---------------------~~~~~iRis~~-~~-~~e~i~~~~~~l~~~  433 (437)
T 3g0t_A          382 -DSSKLIEKFVRY---G-MCAITLKTTGS---------------------KRNEAMRICTS-LL-PESQFPDLEKRLQML  433 (437)
T ss_dssp             -CHHHHHHHHHHT---T-EECEESTTTTC---------------------CCTTCEEEECS-SS-CGGGHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHc---C-eEEeeccccCC---------------------CCCCEEEEEEe-cC-CHHHHHHHHHHHHHH
Confidence             255677777642   3 56665544311                     01377999999 64 334445555555544

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.96  E-value=9e-28  Score=243.08  Aligned_cols=312  Identities=15%  Similarity=0.147  Sum_probs=217.0

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEE
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHV  144 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~V  144 (450)
                      +++.+.+...  + ...+.|+..  ....++++.+|+++    |    .+ .+++|+|   |++|+++++++++++||+|
T Consensus        57 ~a~~~~~~~~--~-~~~~~y~~~--~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~V  128 (429)
T 1yiz_A           57 NALAAAANSP--D-PLANQYTRG--FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVG---AYEALYATIQGHVDEGDEV  128 (429)
T ss_dssp             HHHHHHHTCS--C-GGGGSCCCS--SCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESH---HHHHHHHHHHHHCCTTCEE
T ss_pred             HHHHHHHhcc--c-cCccCCCCC--CCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecC---hHHHHHHHHHHhcCCCCEE
Confidence            5555555431  1 122345432  22456677777664    5    35 8999999   9999999999999999999


Q ss_pred             EEeCCCchhHHHHHHHhCCCccCeeEEEeCC---------------CCHHHHHHhhhcCCceEEEEecCCCCcccccC--
Q 013079          145 VAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN--  207 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---------------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~--  207 (450)
                      +++.|.|+++...+.     ..|.++..++.               .|+++|++++ ++++++|++++|+||||.+.+  
T Consensus       129 l~~~p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~  202 (429)
T 1yiz_A          129 IIIEPFFDCYEPMVK-----AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF-NEKTKMIIINTPHNPLGKVMDRA  202 (429)
T ss_dssp             EEEESCCTTHHHHHH-----HTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHH
T ss_pred             EEcCCCchhHHHHHH-----HcCCEEEEEeCCcccccccccccCcccCHHHHHHHh-ccCceEEEECCCCCCCCccCCHH
Confidence            999999999988775     25777766653               3789999999 788999999999999999985  


Q ss_pred             -HHHHHHHHHhcCCEEEEeCCCCCCCC------Ccc----CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh
Q 013079          208 -IPELSRLAHDKGVTVVVDNTFSPLVL------SPA----RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH  276 (450)
Q Consensus       208 -l~~I~~la~~~gi~livD~~~~~~~~------~~~----~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~  276 (450)
                       +++|+++|+++|+++|+|++|+.+.+      +..    ..++|+++.|+||.++++|+|+ ||+++++++++.+....
T Consensus       203 ~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~  281 (429)
T 1yiz_A          203 ELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI-GWAYGPEALLKNLQMVH  281 (429)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCC-EEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcce-EEEEeCHHHHHHHHHHH
Confidence             89999999999999999999965432      111    2368999999999999999998 99999999988887654


Q ss_pred             hhhhhccCCCchHHHHHHHHcc--------CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccC
Q 013079          277 QGALMLLGPTMNPKVAFELSER--------IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKE  348 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~--------~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~  348 (450)
                      . .....++.+.+.++..++..        .+++....+++.++++.+.+.|++++..+..|.                 
T Consensus       282 ~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-----------------  343 (429)
T 1yiz_A          282 Q-NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQ-----------------  343 (429)
T ss_dssp             H-TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEECS-----------------
T ss_pred             h-hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-----------------
Confidence            3 11233344444444444443        334556666778899999999988776654332                 


Q ss_pred             CCcCcEEEEEeCCH------------HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079          349 YGFGGLLCLDMETE------------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG  416 (450)
Q Consensus       349 ~g~g~~~~~~l~~~------------~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~  416 (450)
                        .|.++++.++..            .....+.+.|..  ..| +.+..|+.+....   .             .+..++
T Consensus       344 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~g-v~v~~g~~f~~~~---~-------------~~~~~~  402 (429)
T 1yiz_A          344 --GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTK--SVG-LQGIPPSAFYSEP---N-------------KHLGED  402 (429)
T ss_dssp             --BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHH--HTS-EECBCGGGGSCGG---G-------------GGGTTT
T ss_pred             --cceEEEEEcccccccccccccccCCCHHHHHHHHHH--hCC-EEEeCchHhCCCc---c-------------cCCCCC
Confidence              466899998742            235567666531  123 5555554321100   0             011257


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          417 LVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       417 ~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .||||++ .  +++.++.+.+.|.++
T Consensus       403 ~iRis~~-~--~~e~i~~~l~~l~~~  425 (429)
T 1yiz_A          403 FVRYCFF-K--KDENLQKAAEILRKW  425 (429)
T ss_dssp             EEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred             eEEEEec-C--CHHHHHHHHHHHHHh
Confidence            8999999 5  455566666666554

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.96  E-value=2.9e-28  Score=242.12  Aligned_cols=290  Identities=12%  Similarity=0.115  Sum_probs=204.6

Q ss_pred             ChhHHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           98 NPTVLNLSRQMAALEGTEA----AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~----~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      .+..+++++.+++++|.+.    +++|+|   |++|++ ++..++++||+|+++.+.|++..  +...... .|.++.++
T Consensus        34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g---~t~al~-~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~-~g~~~~~v  106 (384)
T 3zrp_A           34 VEALAYSLKGLRYVMGASKNYQPLIIPGG---GTSAME-SVTSLLKPNDKILVVSNGVFGDR--WEQIFKR-YPVNVKVL  106 (384)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSEEEEEESC---HHHHHH-HGGGGCCTTCEEEEECSSHHHHH--HHHHHTT-SSCEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcEEEEcCC---cHHHHH-HHHhhcCCCCEEEEecCCcchHH--HHHHHHH-cCCcEEEe
Confidence            5678999999999999754    899999   999999 99989999999999999997732  1122222 68899998


Q ss_pred             CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeC
Q 013079          174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHS  246 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S  246 (450)
                      +.+     |+++|++++...++++|++++++||||.+.|+++|.++|+++|+++|+|++++  ....+....++|+++.|
T Consensus       107 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s  186 (384)
T 3zrp_A          107 RPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTA  186 (384)
T ss_dssp             CCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred             cCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEec
Confidence            875     89999999933389999999999999999999999999999999999999983  33344455689999999


Q ss_pred             CCCccc-cCccceEEEEEcCHHHHHHH-------------HHHhhhhh-------hccCC-CchHHHHH-HHHccC--Cc
Q 013079          247 ISKFIS-GGADIIAGAVCGPANLVNSM-------------MDLHQGAL-------MLLGP-TMNPKVAF-ELSERI--PH  301 (450)
Q Consensus       247 ~sK~~g-~~g~~igG~l~~~~~~~~~l-------------~~~~~~~~-------~~~g~-~~~~~~a~-~~~~~~--~~  301 (450)
                      +||+++ ++|  + |+++.++++++.+             ........       ...|. ......+. .++...  ..
T Consensus       187 ~~K~~~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~  263 (384)
T 3zrp_A          187 SQKALGSAAG--L-GLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEG  263 (384)
T ss_dssp             TTSTTCCCSS--E-EEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CcccccCCCc--e-EEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcC
Confidence            999885 444  5 9999998887776             22222110       01122 22222221 222211  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013079          302 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM  381 (450)
Q Consensus       302 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i  381 (450)
                      +....+++.++++++.+.|++++.++..|.    +           ....+++++|.+++ .....+.+.|...   | +
T Consensus       264 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~-----------~~~~~~~~~~~~~~-~~~~~~~~~l~~~---g-i  323 (384)
T 3zrp_A          264 IENRIKRHTMVASAIRAGLEALGLEIVARR----P-----------ESYSNTVTGVILKV-ADPQKVLAGTVNE---G-V  323 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSCSS----G-----------GGBCSSEEEEECSS-SCHHHHHHHHHTT---T-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeEccCc----c-----------cccCccEEEEECCC-CCHHHHHHHHHHC---C-E
Confidence            556667788899999999998865543322    0           01246688999986 3356777777652   3 5


Q ss_pred             ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          382 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       382 ~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .++.|..+                      .  .+.||||++ ...+++.++.+.++|.++
T Consensus       324 ~v~~g~~~----------------------~--~~~iRi~~~-~~~~~e~i~~~~~~l~~~  359 (384)
T 3zrp_A          324 EFAPGVHP----------------------A--FKYFRIGHM-GWVTPNDAIIAISVIERT  359 (384)
T ss_dssp             CCEECCCT----------------------T--CCEEEEECC-SSCCHHHHHHHHHHHHHH
T ss_pred             EEecCCCC----------------------C--cCEEEEecc-ccCCHHHHHHHHHHHHHH
Confidence            55555311                      0  168999999 656666666655555543

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.96  E-value=3.1e-28  Score=246.08  Aligned_cols=296  Identities=15%  Similarity=0.089  Sum_probs=211.3

Q ss_pred             ccccCCCChhHHHHHHHHHHHhC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCcc
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRAC  166 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~  166 (450)
                      +.|+....+..+++++.+++.++    .+.++||+|   +++|++++++.++++||+|++..|.|+++...+.     ..
T Consensus        92 ~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g---~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~-----~~  163 (421)
T 3l8a_A           92 FGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDG---VVPAISIALQAFSEKGDAVLINSPVYYPFARTIR-----LN  163 (421)
T ss_dssp             SSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHH-----HT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCC---HHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HC
Confidence            55666666777888888888877    356999999   9999999999999999999999999999888775     25


Q ss_pred             CeeEEEeCCC--------CHHHHHHhhhcCCceEEEEecCCCCcccc---cCHHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079          167 NITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPLVLS-  234 (450)
Q Consensus       167 g~~v~~v~~~--------d~~~l~~ai~~~~t~lv~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~~~~-  234 (450)
                      |.++..++.+        |+++|++++.++++++|++++|+||+|.+   .++++|+++|+++|+++|+|++|+.+... 
T Consensus       164 g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g  243 (421)
T 3l8a_A          164 DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFG  243 (421)
T ss_dssp             TEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             CCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence            7777777643        89999999933789999999999999998   57999999999999999999999655321 


Q ss_pred             -----ccC-----CCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcH
Q 013079          235 -----PAR-----LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHL  302 (450)
Q Consensus       235 -----~~~-----~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l  302 (450)
                           ...     .+.++++.|+||.+|++|.++ |+++.+ +++.+.+...........++.+.+.++..++.. .+++
T Consensus       244 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~-G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~  322 (421)
T 3l8a_A          244 NTHHSLNTLDASYKDFTIILSSATKTFNIAGTKN-SFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWL  322 (421)
T ss_dssp             CCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCC-EEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHH
T ss_pred             CCCccHHHcCchhcCcEEEEEeChhhccCchhhe-EeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHH
Confidence                 111     256799999999999899998 898887 888888876554222123333444444444432 2335


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccc
Q 013079          303 GLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGF  380 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~  380 (450)
                      .+..+++.++++++.+.|+++ +..+..|.                   .+.++|++++.. .....+.+.|..  ..| 
T Consensus       323 ~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~-------------------~~~~~~v~~~~~~~~~~~l~~~l~~--~~g-  380 (421)
T 3l8a_A          323 EELKTVIEGNIKLVIKELEAKTKIKVMEPE-------------------GTYLVWLDFSAYAIAQPQLSEKLQN--EAK-  380 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCEEECCS-------------------BSSEEEEECGGGTCCTTHHHHHHHH--TTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEeCCC-------------------eeEEEEEeccccCCCHHHHHHHHHH--hCC-
Confidence            666677788999999999886 44554332                   344667888631 124456666632  123 


Q ss_pred             cccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       381 i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      +.++.|+.+..                     ..++.||||++ .  +++.++.+.+.|.+
T Consensus       381 i~v~~g~~f~~---------------------~~~~~iRi~~~-~--~~~~i~~~l~~l~~  417 (421)
T 3l8a_A          381 VVLNDGAHFGK---------------------EGKYFARLNVA-T--PKNTVQEALSRIIS  417 (421)
T ss_dssp             EECEEGGGGCG---------------------GGTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred             EEEECchhhCC---------------------CCCCEEEEEec-C--CHHHHHHHHHHHHH
Confidence            56666654311                     11588999999 5  34444544444443

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.96  E-value=6.2e-28  Score=238.20  Aligned_cols=278  Identities=13%  Similarity=0.154  Sum_probs=202.0

Q ss_pred             CChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .++...++++.+|++++.  +.+++|+|   |++|+++++..+    |+|+++.|+|+++...+.     ..|.++.+++
T Consensus        59 ~~~~~~~l~~~la~~~~~~~~~i~~~~g---~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~-----~~g~~~~~~~  126 (361)
T 3ftb_A           59 PDVNYRRLNKSIENYLKLKDIGIVLGNG---ASEIIELSISLF----EKILIIVPSYAEYEINAK-----KHGVSVVFSY  126 (361)
T ss_dssp             CCTTCHHHHHHHHHHHTCCSCEEEEESS---HHHHHHHHHTTC----SEEEEEESCCTHHHHHHH-----HTTCEEEEEE
T ss_pred             CCccHHHHHHHHHHHhCCCcceEEEcCC---HHHHHHHHHHHc----CcEEEecCChHHHHHHHH-----HcCCeEEEee
Confidence            345568999999999984  57899999   999999999876    899999999999988775     3688888887


Q ss_pred             CC-----CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC----Ccc----CC
Q 013079          175 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL----SPA----RL  238 (450)
Q Consensus       175 ~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~----~~~----~~  238 (450)
                      .+     +++++++++ ++ +++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+..    .+.    ..
T Consensus       127 ~~~~~~~~~~~l~~~l-~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  204 (361)
T 3ftb_A          127 LDENMCIDYEDIISKI-DD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNY  204 (361)
T ss_dssp             CCTTSCCCHHHHHHHT-TT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTC
T ss_pred             cCcccCCCHHHHHHhc-cC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccC
Confidence            54     678999999 66 999999999999999986   66788888899999999999954433    211    12


Q ss_pred             CCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013079          239 GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFA  317 (450)
Q Consensus       239 g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~  317 (450)
                      +.++++.|+||.+|++|.++ ||++ .++++++.+......   ...+.+.+.++..++...+++.++.+++.++++++.
T Consensus       205 ~~~i~~~s~sK~~~~~G~r~-g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  280 (361)
T 3ftb_A          205 SCLFIIRAMTKFFAMPGIRF-GYGITNNKEIAAKIKAKQNP---WNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFI  280 (361)
T ss_dssp             SSEEEEEESSSTTSCGGGCC-EEEEESCHHHHHHHHTTSCT---TCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeChhhcCCCCcce-eEEEeCCHHHHHHHHhhCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999998 8887 899998888755441   222223333333333322335566677788999999


Q ss_pred             HHHHhCCC-e-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          318 RRMKKLGL-K-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       318 ~~L~~~~~-~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      +.|++++. . +. +.                   .|+++++.++. .....+.+.|...   | +.++.|+.+.     
T Consensus       281 ~~l~~~~~~~~~~-~~-------------------~~~~~~~~~~~-~~~~~l~~~l~~~---g-i~v~~g~~~~-----  330 (361)
T 3ftb_A          281 EELNKIGFIKRVF-SP-------------------HANFVLCRLEN-ISGEKLYDSLLKE---D-IVIRRCCNFI-----  330 (361)
T ss_dssp             HHHHHSSSEEEEE-CC-------------------SSSEEEEEESS-SCHHHHHHHHHTT---T-EECEECTTST-----
T ss_pred             HHHHhCCCCceec-CC-------------------CCeEEEEEcCC-CCHHHHHHHHHHC---C-eEEeeCccCC-----
Confidence            99998854 4 43 22                   35688999985 2355677777652   3 5666664431     


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                      +..++.||||++ .   .+.++.|.++|+++
T Consensus       331 ----------------~~~~~~iRis~~-~---~~~~~~l~~~l~~~  357 (361)
T 3ftb_A          331 ----------------GLDDSFVRFAIK-D---EKKNTKFLRALKGV  357 (361)
T ss_dssp             ----------------TCCTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred             ----------------CCCCCEEEEEcC-C---HHHHHHHHHHHHHH
Confidence                            123588999999 4   22344555555544

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.96  E-value=5.7e-28  Score=239.92  Aligned_cols=280  Identities=12%  Similarity=0.067  Sum_probs=199.6

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccC--CCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ..++++.+|+++    |    .+.+++|+|   |++|++++++.++++  ||+|+++.|+|+++...+.     ..|.++
T Consensus        61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g---~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~  132 (376)
T 3ezs_A           61 EESLRAAQRGFFKRRFKIELKENELISTLG---SREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAK-----FIKAKS  132 (376)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCGGGEEEESS---SHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHH-----HTTCEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHEEECcC---cHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHH-----HcCCEE
Confidence            345666666654    5    367999999   999999999999999  9999999999999888775     368888


Q ss_pred             EEeCCCCHH----HHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc--
Q 013079          171 TFVDISDHE----MVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA--  236 (450)
Q Consensus       171 ~~v~~~d~~----~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~--  236 (450)
                      .+++.++.+    ++++++ .+++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+.     ..  
T Consensus       133 ~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~  211 (376)
T 3ezs_A          133 LLMPLTKENDFTPSLNEKE-LQEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEA  211 (376)
T ss_dssp             EEEECCGGGTSCCCCCHHH-HHHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHH
T ss_pred             EEcccCCCCCcchhHHhhh-ccCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHc
Confidence            888765221    566667 567999999999999999987   667888899999999999999654331     11  


Q ss_pred             -------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079          237 -------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH  309 (450)
Q Consensus       237 -------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~  309 (450)
                             ..+.++++.|+||.+|++|.|+ ||++.++++++.+...... .....+.+.+.++..++...+++....+++
T Consensus       212 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  289 (376)
T 3ezs_A          212 CMLAGNEAFKNVLVIHSLSKRSSAPGLRS-GFIAGDSRLLEKYKAFRAY-LGYTSANAIQKASEAAWLDDRHAEFFRNIY  289 (376)
T ss_dssp             HHHTTCTTCTTEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHHTT-TCCCCCHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred             cccccccccCcEEEEecchhccCCcccee-EEEeeCHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence                   3578899999999999899998 9999999999888766541 112233344444444444444556666677


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      .++++.+.+.|+  ++.  .|                   +.|.++++.+++   ...+.+.|..  +.| +.++.|+.+
T Consensus       290 ~~~~~~l~~~l~--~~~--~~-------------------~~~~~~~~~~~~---~~~~~~~l~~--~~g-i~v~~g~~~  340 (376)
T 3ezs_A          290 ANNLKLARKIFK--NTL--IY-------------------PYSFYVYLPVQN---GENFAKTLYQ--NEG-IITLPALYL  340 (376)
T ss_dssp             HHHHHHHHHHST--TCC--CC-------------------SBSSEEEEECSC---HHHHHHHHHH--HHC-CBCEEGGGG
T ss_pred             HHHHHHHHHHhc--CCC--CC-------------------CcceEEEEECCC---HHHHHHHHHH--hCC-EEEeCcHHh
Confidence            888888888876  322  22                   256789999973   3455555543  123 677767554


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ...                   ...++.||||++ .  +++.++.+.++|.++
T Consensus       341 ~~~-------------------~~~~~~iRis~~-~--~~~~i~~~l~~l~~~  371 (376)
T 3ezs_A          341 GRN-------------------RIGADYVRLALV-Y--DTPLLEKPLEIIETY  371 (376)
T ss_dssp             CST-------------------TTTTTEEEEECC-S--CHHHHHHHHHHHHHH
T ss_pred             CCC-------------------CCCCCeEEEEEc-C--CHHHHHHHHHHHHHH
Confidence            310                   112588999998 5  445555555555544

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5.6e-28  Score=246.23  Aligned_cols=289  Identities=20%  Similarity=0.218  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHh----CC----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----GT----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g~----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..++++.+|+++    |.    +.+++|+|   |++|+.+++++++++||+|+++.|.|+++...+.     ..|.++..
T Consensus        97 ~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~~  168 (447)
T 3b46_A           97 RPSLINSLIKLYSPIYNTELKAENVTVTTG---ANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIE-----LCGGKVVY  168 (447)
T ss_dssp             CHHHHHHHHHHHTTTTTSCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEeCC---HHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHH-----HcCCEEEE
Confidence            456777777765    32    56999999   9999999999999999999999999999988775     25666665


Q ss_pred             eCC-----------------CCHHHHHHhhhcCCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          173 VDI-----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       173 v~~-----------------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                      ++.                 .|+++|++++ ++++++|++++|+||||.+.   ++++|+++|+++|+++|+|++|..+.
T Consensus       169 v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~  247 (447)
T 3b46_A          169 VPINPPKELDQRNTRGEEWTIDFEQFEKAI-TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLY  247 (447)
T ss_dssp             EEEECCGGGGTSCBCSTTSEECHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred             EeCCCccccccccccccCcccCHHHHHHhh-ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence            542                 2789999999 78899999999999999996   58899999999999999999996543


Q ss_pred             CC-----ccC-----CCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc---
Q 013079          233 LS-----PAR-----LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER---  298 (450)
Q Consensus       233 ~~-----~~~-----~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~---  298 (450)
                      +.     ...     .+.|+++.|+||.++++|+|+ ||+++ ++++++.+...... ....++.+.+.++..++..   
T Consensus       248 ~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~ri-G~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~a~~~aL~~~~~  325 (447)
T 3b46_A          248 FTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRI-GWVLSLNAELLSYAAKAHTR-ICFASPSPLQEACANSINDALK  325 (447)
T ss_dssp             CSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCC-EEEECSCHHHHHHHHHHHHH-HTSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhh-EEEEeCCHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhCCcc
Confidence            31     122     268999999999999999998 99999 99998888765431 1233444444444434432   


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH---------------H
Q 013079          299 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE---------------E  363 (450)
Q Consensus       299 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~---------------~  363 (450)
                      ..++.+..+++.++++.+.+.|++++..+..|.                   .|.+++++++..               .
T Consensus       326 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~p~~~~~~~~~~~~~  386 (447)
T 3b46_A          326 IGYFEKMRQEYINKFKIFTSIFDELGLPYTAPE-------------------GTYFVLVDFSKVKIPEDYPYPEEILNKG  386 (447)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHTCCEECCS-------------------BSSEEEEECTTCCCCTTCCCCGGGSSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC-------------------eeEEEEEecccccCccccccccccccCC
Confidence            233555667788999999999988776654442                   466889988631               2


Q ss_pred             HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ....|...|..  ..| +.+..|+.+...  + .             .+..++.||||++ .  .++.++...+.|.+
T Consensus       387 ~~~~~~~~l~~--~~g-V~v~pg~~f~~~--~-~-------------~~~~~~~iRls~~-~--~~e~l~~~~~~l~~  442 (447)
T 3b46_A          387 KDFRISHWLIN--ELG-VVAIPPTEFYIK--E-H-------------EKAAENLLRFAVC-K--DDAYLENAVERLKL  442 (447)
T ss_dssp             HHHHHHHHHHH--HTC-EECBCGGGGSCG--G-G-------------GGGGTTEEEEECC-S--CHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHH--hCC-EEEECchHhCCC--C-c-------------cCCCCCEEEEEEe-C--CHHHHHHHHHHHHH
Confidence            34567766542  123 555555432210  0 0             0011578999999 6  34444444444444

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.96  E-value=1.6e-27  Score=239.73  Aligned_cols=315  Identities=14%  Similarity=0.126  Sum_probs=221.6

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG  153 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~  153 (450)
                      +++.+.++. +++....+.+.....+..+++++.+++++|.+..+++++   |++|+..++++++++||.|+++.+.|++
T Consensus        80 ~a~~~~l~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~s---Gt~a~~~~l~~~~~~gd~Vl~~~~~~~~  155 (409)
T 3kki_A           80 ARLAKSLLE-EQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQS---GWNANVGLLQTICQPNTNVYIDFFAHMS  155 (409)
T ss_dssp             HHHHHHHHS-CCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHCCTTCEEEEETTSCHH
T ss_pred             HHHHHHHHH-cCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecc---hHHHHHHHHHHhcCCCCEEEECCCcCHH
Confidence            556665543 333222222222234566789999999999999999999   9999999999999999999999999999


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                      +...+.     ..|.++..++..|+++|++++...++++|++++++||||.+.|+++|.++|+++|+++|+|++|+...+
T Consensus       156 ~~~~~~-----~~g~~~~~~~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~  230 (409)
T 3kki_A          156 LWEGAR-----YANAQAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTH  230 (409)
T ss_dssp             HHHHHH-----HTTCEEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred             HHHHHH-----HcCCeEEEecCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCcccccc
Confidence            888775     357888888888999999999434689999999999999999999999999999999999999954221


Q ss_pred             Cc--------cC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH-HHHccCCcH
Q 013079          234 SP--------AR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSERIPHL  302 (450)
Q Consensus       234 ~~--------~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~~~~l  302 (450)
                      .+        ..  .++|+++.|+||.++++    ||++++++++++.+..............+...++. .++...+..
T Consensus       231 g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~----gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~  306 (409)
T 3kki_A          231 GPNGAGLLAELGLTREVHFMTASLAKTFAYR----AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESA  306 (409)
T ss_dssp             SGGGCCHHHHHTCGGGCSEEEEESSSTTCSS----CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCcchhhcCCCCCCCEEEeecchhhCCC----ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcC
Confidence            10        11  15789999999999976    39999988887776654332211122222122122 222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013079          303 GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~  382 (450)
                      ....+++.++++++.+.|++++..+.                     +.+.++++.++.......+.+.|...   | +.
T Consensus       307 ~~~~~~~~~~~~~l~~~L~~~g~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~L~~~---G-v~  361 (409)
T 3kki_A          307 DNRRQHLDRMARKLRIGLSQLGLTIR---------------------SESQIIGLETGDERNTEKVRDYLESN---G-VF  361 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCCC---------------------CSSSEEEEEEESHHHHHHHHHHHHHT---T-EE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccC---------------------CCCCEEEEEeCCHHHHHHHHHHHHHC---C-ce
Confidence            45556678889999999998765432                     24568999998765567777777652   3 33


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~  447 (450)
                      ++.+..      +..              ....+.|||+++ ...+++.++.+.++|.++.+..+
T Consensus       362 v~~~~~------~~~--------------~~~~~~iRi~~~-~~~t~e~i~~~~~~l~~~l~~~~  405 (409)
T 3kki_A          362 GSVFCR------PAT--------------SKNKNIIRLSLN-SDVNDEQIAKIIEVCSDAVNYGD  405 (409)
T ss_dssp             CEEECT------TSS--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHSS
T ss_pred             EeeeCC------CCc--------------CCCCcEEEEEcc-CCCCHHHHHHHHHHHHHHHhcCC
Confidence            332211      100              112578999999 77777778887777776654443

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.96  E-value=7.9e-28  Score=242.21  Aligned_cols=297  Identities=20%  Similarity=0.242  Sum_probs=206.5

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..++++.+|+++    |    .+ .+++|+|   |++|+.+++.+++++||+|+++.|+|+++...+.     ..|.++.
T Consensus        64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g---~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~  135 (411)
T 2o0r_A           64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVG---ATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVA-----MAGAHRV  135 (411)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCCceEEEeCC---HHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHH-----HcCCEEE
Confidence            355666666664    5    34 7999999   9999999999999999999999999999887764     2577777


Q ss_pred             EeCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------
Q 013079          172 FVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------  234 (450)
Q Consensus       172 ~v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------  234 (450)
                      +++.        .|+++|++++ ++++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|+.+.+.      
T Consensus       136 ~v~~~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~  214 (411)
T 2o0r_A          136 TVPLVPDGRGFALDADALRRAV-TPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLP  214 (411)
T ss_dssp             EEECEEETTEEECCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCC
T ss_pred             EeeccccccCCCCCHHHHHHhh-ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcC
Confidence            7654        3899999999 778999999999999999977   589999999999999999999554321      


Q ss_pred             ccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHH
Q 013079          235 PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEH  309 (450)
Q Consensus       235 ~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~  309 (450)
                      ...    .++|+++.|+||.+|++|+|+ ||++.++++++.+....... ....+.+.+.++..++... +++....+++
T Consensus       215 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  292 (411)
T 2o0r_A          215 LAGFDGMAERTITISSAAKMFNCTGWKI-GWACGPAELIAGVRAAKQYL-SYVGGAPFQPAVALALDTEDAWVAALRNSL  292 (411)
T ss_dssp             GGGSTTTGGGEEEEEEHHHHTTCTTTCE-EEEECCHHHHHHHHHHHHHH-TSCCCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhccCCCCCEEEEeechhhcCCccceE-EEEeeCHHHHHHHHHHHhhc-cCCCChHHHHHHHHHHhCChHHHHHHHHHH
Confidence            112    367999999999999999998 99999999988887654421 1334445554444444332 3345556667


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhcccccccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      .++++++.+.|++++..+..|.                   .|.++++.++..  .....+.+.|..  ..| +.+..|+
T Consensus       293 ~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~  350 (411)
T 2o0r_A          293 RARRDRLAAGLTEIGFAVHDSY-------------------GTYFLCADPRPLGYDDSTEFCAALPE--KVG-VAAIPMS  350 (411)
T ss_dssp             HHHHHHHHHHHHHHTCEECCCC-------------------BSSEEEEECGGGTCCCHHHHHHHHHH--HHS-EECEEGG
T ss_pred             HHHHHHHHHHHHHcCCEecCCC-------------------eeEEEEEecCCCCCCCHHHHHHHHHH--hCC-EEEcChh
Confidence            8889999999988766554332                   355889998641  124456665531  123 5666664


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .+......++.        ..  ....++.||||++ .  +++.++.+.++|.++.
T Consensus       351 ~f~~~~~~~~~--------~~--~~~~~~~iRis~~-~--~~e~i~~~~~~l~~~~  393 (411)
T 2o0r_A          351 AFCDPAAGQAS--------QQ--ADVWNHLVRFTFC-K--RDDTLDEAIRRLSVLA  393 (411)
T ss_dssp             GGSCCC------------------CCGGGCEEEECC-S--CHHHHHHHHHHHGGGG
T ss_pred             hhCCCcccccc--------cc--ccCCCCeEEEEec-C--CHHHHHHHHHHHHHHH
Confidence            43110000000        00  0112478999999 6  3555666666666543

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.96  E-value=4.1e-28  Score=245.49  Aligned_cols=292  Identities=15%  Similarity=0.197  Sum_probs=205.1

Q ss_pred             hHHHHHHHHHHHh----C---C--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          100 TVLNLSRQMAALE----G---T--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       100 ~~~~l~~~iA~l~----g---~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ...++++.+|+++    |   .  +.+++|+|   |++|+++++.+++++||+|++..|+|+++...+.     ..|.++
T Consensus        86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G---~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~  157 (425)
T 1vp4_A           86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVG---SQQALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANF  157 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEE
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCcccEEEecc---HHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEE
Confidence            3567788888877    7   2  46899999   9999999999999999999999999999988775     367777


Q ss_pred             EEeCCC----CHHHHHHhhhc-------CCceEEE-EecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079          171 TFVDIS----DHEMVNSAIVQ-------GRTKVLY-FESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-  234 (450)
Q Consensus       171 ~~v~~~----d~~~l~~ai~~-------~~t~lv~-i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-  234 (450)
                      ..++.+    |+++|++++..       .++++|+ +++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+. 
T Consensus       158 ~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g  237 (425)
T 1vp4_A          158 VVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEG  237 (425)
T ss_dssp             EEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSS
T ss_pred             EEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC
Confidence            777653    89999998832       2789985 7899999999986   668999999999999999999654331 


Q ss_pred             -----ccC---CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC---CcHH
Q 013079          235 -----PAR---LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLG  303 (450)
Q Consensus       235 -----~~~---~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~  303 (450)
                           ...   .+.++++.|+||+++ +|+|+ ||+++++++++.+....... ....+.+.+.++..++...   +++.
T Consensus       238 ~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~  314 (425)
T 1vp4_A          238 ETVDPIFKIGGPERVVLLNTFSKVLA-PGLRI-GMVAGSKEFIRKIVQAKQSA-DLCSPAITHRLAARYLERYDLLEQLK  314 (425)
T ss_dssp             CCCCCHHHHHCTTTEEEEEESTTTTC-GGGCE-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHSCHHHHTH
T ss_pred             CCCcCHHHhCCCCCEEEEeccccccc-cccce-EEEeeCHHHHHHHHHHhhhh-cCCCCHHHHHHHHHHHhcCCHHHHHH
Confidence                 111   257899999999999 99998 99999999988887655422 1233444444444444332   2344


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079          304 LRMKEHCHRALIFARRMKKL-----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF  378 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~-----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~  378 (450)
                      ...+++.++++.+.+.|+++     +..+..|.                   .|.++++.++.......+.+.|...   
T Consensus       315 ~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~l~~~l~~~---  372 (425)
T 1vp4_A          315 PTIELYRRKRTVMLNALEEYFSDIPGVKWVKSE-------------------GGLFIWLTLPEGFDTWEMFEYAKRK---  372 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCS-------------------BSSEEEEECCTTCCTTTTHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCceEEecCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---
Confidence            55566788889999999874     34443332                   4668999997321234455555432   


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHhhhc
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~~~~  445 (450)
                      | +.+..|+.+...                   +..++.||||++ ..   +.++.++.|.+++.++.+.
T Consensus       373 g-i~v~~g~~f~~~-------------------~~~~~~iRis~~-~~~~e~i~~~l~~l~~~l~~~~~~  421 (425)
T 1vp4_A          373 K-VFYVPGRVFKVY-------------------DEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE  421 (425)
T ss_dssp             T-EECEEGGGGCTT-------------------CCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CEEECchhhcCC-------------------CCCCCeEEEEeC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence            2 566655432110                   112578999999 63   3445556666666655443

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.96  E-value=5.4e-28  Score=239.34  Aligned_cols=278  Identities=13%  Similarity=0.107  Sum_probs=199.2

Q ss_pred             hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      +...++++.||++++.  +.+++|+|   +++++++++..+  +||+|++..|+|+++...+.     ..|.++..++.+
T Consensus        59 ~~~~~l~~~la~~~~~~~~~v~~~~g---~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~~  128 (364)
T 1lc5_A           59 ADYFHLHQALARHHQVPASWILAGNG---ETESIFTVASGL--KPRRAMIVTPGFAEYGRALA-----QSGCEIRRWSLR  128 (364)
T ss_dssp             TTCHHHHHHHHHHHTSCGGGEEEESS---HHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHH-----HTTCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHCcCHHHEEECCC---HHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHH-----HcCCeEEEEeCC
Confidence            4568899999999986  46899999   999999999987  67999999999999988775     257788887764


Q ss_pred             C------HHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC---Ccc----CCCC
Q 013079          177 D------HEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL---SPA----RLGA  240 (450)
Q Consensus       177 d------~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~---~~~----~~g~  240 (450)
                      .      ++++.+.+ ++++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|..+..   .+.    ..+.
T Consensus       129 ~~~~~~~l~~~~~~~-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  207 (364)
T 1lc5_A          129 EADGWQLTDAILEAL-TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH  207 (364)
T ss_dssp             GGGTTCCCTTHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred             cccccchhHHHHHhc-cCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCC
Confidence            2      35455666 578999999999999999998   89999999999999999999954432   222    2368


Q ss_pred             eEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079          241 DVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR  319 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~  319 (450)
                      ++++.|+||++|++|.|+ ||++ .++++++.+......   ...+.+.+.++..++...+++....+++.++++++.+.
T Consensus       208 ~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  283 (364)
T 1lc5_A          208 IWVLRSLTKFYAIPGLRL-GYLVNSDDAAMARMRRQQMP---WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQA  283 (364)
T ss_dssp             EEEEEESTTTTTCTTTCC-EEEECCCHHHHHHHHHHSCT---TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECchhhcCCccce-EEEEECCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999899998 9998 999998888765431   22233333333333322233555666678888999999


Q ss_pred             HHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccc
Q 013079          320 MKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS  398 (450)
Q Consensus       320 L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~  398 (450)
                      |++++ ..+. |.                   .|+++++.++..  ...+.+.|...   | +.+..|+.+.        
T Consensus       284 L~~~~~~~~~-~~-------------------~g~~~~~~~~~~--~~~l~~~l~~~---g-i~v~~g~~~~--------  329 (364)
T 1lc5_A          284 LCQLPLLTVY-PG-------------------RANYLLLRCERE--DIDLQRRLLTQ---R-ILIRSCANYP--------  329 (364)
T ss_dssp             HHTSTTEEEC-CC-------------------SSSEEEEEESCT--TCCHHHHHHTT---T-EECEECTTST--------
T ss_pred             HhcCCCCEEC-CC-------------------CCeEEEEECCCc--HHHHHHHHHHC---C-cEEeeCcccC--------
Confidence            98873 3432 22                   356888988742  33466666542   3 5666554321        


Q ss_pred             cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          399 TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       399 ~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                   +..++.||||++ .   .+.++.+.++|+++
T Consensus       330 -------------~~~~~~iRis~~-~---~~~~~~l~~~l~~~  356 (364)
T 1lc5_A          330 -------------GLDSRYYRVAIR-S---AAQNERLLAALRNV  356 (364)
T ss_dssp             -------------TCCTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred             -------------CCCCCEEEEEeC-C---HHHHHHHHHHHHHH
Confidence                         112578999999 4   33344555555544

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.96  E-value=1.8e-28  Score=249.27  Aligned_cols=324  Identities=14%  Similarity=0.093  Sum_probs=214.6

Q ss_pred             HHHHHhhcCCCCC-------CC-CCccccCCCChhHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHHHHHh
Q 013079           74 ETMRRMFAGELGP-------DR-DFFIYSRHFNPTVLNLSRQMAALE--------GTEAAYCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        74 ~~~~~~~~~~~~n-------~~-~~~~y~r~~~~~~~~l~~~iA~l~--------g~~~~~~tsg~~~gt~ai~~al~~l  137 (450)
                      +.+.+.++..+.+       ++ +.+.++........++|+.||+++        +.+++++|+|   |++|+++++.++
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G---~t~al~~~~~~l  126 (444)
T 3if2_A           50 ELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNG---SQNAFFYLFNLF  126 (444)
T ss_dssp             HHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC---cHHHHHHHHHHH
Confidence            4555555544444       43 233344333445678888888886        3467999999   999999999999


Q ss_pred             ccCCC--------------EEEEe-CCCchhHHHHHH--HhCCCccCeeEEEeCC----------CCHHHHHHh---hhc
Q 013079          138 CSSGG--------------HVVAA-RTLYGGTHALLT--HFFPRACNITTTFVDI----------SDHEMVNSA---IVQ  187 (450)
Q Consensus       138 ~~~gd--------------~Vi~~-~~~y~~~~~~~~--~~~~~~~g~~v~~v~~----------~d~~~l~~a---i~~  187 (450)
                      +++||              +|+++ .|+|+++...+.  ..+.. .|..+..++.          .|+++|+++   + +
T Consensus       127 ~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~-~  204 (444)
T 3if2_A          127 GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAA-VLPHIDEVTHDGEEGFFKYRVDFEALENLPALK-E  204 (444)
T ss_dssp             SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEE-CCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH-T
T ss_pred             hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhc-cCceEEecccccccCccccCCCHHHHHHHHHhc-C
Confidence            98887              78875 899998765321  01112 4666666552          389999988   5 6


Q ss_pred             CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCC----CCC---ccCCCCeEEEeCCCCccccCccc
Q 013079          188 GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL----VLS---PARLGADVVVHSISKFISGGADI  257 (450)
Q Consensus       188 ~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~----~~~---~~~~g~di~~~S~sK~~g~~g~~  257 (450)
                      +++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+    .+.   +...+.++++.|+||+ +++|.|
T Consensus       205 ~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r  283 (444)
T 3if2_A          205 GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMR  283 (444)
T ss_dssp             TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGC
T ss_pred             CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCc
Confidence            78999999999999999998   889999999999999999999532    111   1223688999999997 779999


Q ss_pred             eEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcH---HH-HHHHHHHHHHHHHHHHHh-CC---CeeeC
Q 013079          258 IAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL---GL-RMKEHCHRALIFARRMKK-LG---LKVLY  329 (450)
Q Consensus       258 igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l---~~-~~~~~~~~~~~l~~~L~~-~~---~~v~~  329 (450)
                      + ||++.++++++.+....... ...++.+.+.++...+......   .. ..+.+.++++.+.+.|++ ++   ..+..
T Consensus       284 ~-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  361 (444)
T 3if2_A          284 T-GIIVADAKVIEAVSAMNAVV-NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHK  361 (444)
T ss_dssp             C-EEEECCHHHHHHHHHHHHHH-HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEEC
T ss_pred             e-EEEEECHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEec
Confidence            8 99999999998887665522 2344555555554444433222   12 234467777788888866 33   23333


Q ss_pred             CCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHH
Q 013079          330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK  408 (450)
Q Consensus       330 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~  408 (450)
                      |.                   .|.++++.++. ......+...|...   | +.++.|+.|.......+.          
T Consensus       362 ~~-------------------~g~~~~~~~~~~~~~~~~l~~~l~~~---g-i~v~~g~~~~~~~~~~~~----------  408 (444)
T 3if2_A          362 PE-------------------GAIFLWLWFKDLPISTLDLYERLKAK---G-TLIVPSEYFFPGVDVSDY----------  408 (444)
T ss_dssp             CC-------------------BSSEEEEEETTCSSCHHHHHHHHHHT---T-EECEEGGGSCTTCCCTTC----------
T ss_pred             CC-------------------ccEEEEEEcCCCCCCHHHHHHHHHHC---C-eEEecchhhcCCCCCccc----------
Confidence            32                   56789999874 22356677777643   3 678888765432111000          


Q ss_pred             HhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079          409 ALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       409 ~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~  442 (450)
                         ....+.||||++ .  +++++.++.|.+++.++
T Consensus       409 ---~~~~~~iRis~~-~~~e~i~~~l~~l~~~~~~~  440 (444)
T 3if2_A          409 ---QHAHECIRMSIA-ADEQTLIDGIKVIGEVVREL  440 (444)
T ss_dssp             ---SGGGSEEEEESS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccCCCeEEEEEe-CCHHHHHHHHHHHHHHHHHH
Confidence               001378999999 7  12333344455555444

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.96  E-value=1.3e-27  Score=240.33  Aligned_cols=284  Identities=17%  Similarity=0.169  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..++++.+|+++    |    .+.+++|+|   |++|+.+++.+++++||+|+++.|+|+++...+.     ..|.++.+
T Consensus        80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g---~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~  151 (406)
T 1xi9_A           80 LPELRKAIVEREKRKNGVDITPDDVRVTAA---VTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVE  151 (406)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCHHHEEEcCC---hHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHH-----HcCCEEEE
Confidence            456777777766    2    357999999   9999999999999999999999999999887774     25777777


Q ss_pred             eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccC
Q 013079          173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-----PAR  237 (450)
Q Consensus       173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-----~~~  237 (450)
                      ++.+       |+++|++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+.     ...
T Consensus       152 v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~  230 (406)
T 1xi9_A          152 YRTIEEEDWQPDIDDIRKKI-TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGS  230 (406)
T ss_dssp             EEEEGGGTSEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHH
T ss_pred             eecCCCcCCcCCHHHHHHhh-CcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHH
Confidence            6542       899999999 778999999999999999976   999999999999999999999554321     112


Q ss_pred             --CCC-eEEEeCCCCccccCccceEEEEE--cCH----HHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHHHHH
Q 013079          238 --LGA-DVVVHSISKFISGGADIIAGAVC--GPA----NLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMK  307 (450)
Q Consensus       238 --~g~-di~~~S~sK~~g~~g~~igG~l~--~~~----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~  307 (450)
                        .+. |+++.|+||+++++|+|+ ||++  .++    ++++.+.......  ...+.+.+.++..++. ..+.+....+
T Consensus       231 ~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~  307 (406)
T 1xi9_A          231 LTKDVPVIVMNGLSKVYFATGWRL-GYMYFVDPENKLSEVREAIDRLARIR--LCPNTPAQFAAIAGLTGPMDYLKEYMK  307 (406)
T ss_dssp             HCSSSCEEEEEESTTTTCCGGGCC-EEEEEECTTCTTHHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             cCCCceEEEEeccccccCCCccEE-EEEEEecCchhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence              256 899999999999899998 8888  888    8888887655421  2334444444444443 3333555566


Q ss_pred             HHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhh-cccccccccc
Q 013079          308 EHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQ-NYAQFGFMAV  383 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~-~~~~~g~i~v  383 (450)
                      ++.++++.+.+.|++++ ..+..|.                   .|.++++.++.  ......+.+.|. .   .| +.+
T Consensus       308 ~~~~~~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g-i~v  364 (406)
T 1xi9_A          308 KLKERRDYIYKRLNEIPGISTTKPQ-------------------GAFYIFPKIEVGPWKNDKEFVLDVLHN---AH-VLF  364 (406)
T ss_dssp             HHHHHHHHHHHHHHTSTTEECCCCC-------------------BSSEECCEECSCSCSSHHHHHHHHHHH---HC-EEC
T ss_pred             HHHHHHHHHHHHHHhCCCCeeecCC-------------------eeEEEEEecCccCCCCHHHHHHHHHHh---CC-EEE
Confidence            77888999999998873 3332221                   24466667763  122456666654 3   23 555


Q ss_pred             ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHH
Q 013079          384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSR  441 (450)
Q Consensus       384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~  441 (450)
                      ..|+.+..                     ..++.||||++ .  +++++.++.|.+++++
T Consensus       365 ~~g~~f~~---------------------~~~~~lRis~~-~~~~~i~~~~~~l~~~l~~  402 (406)
T 1xi9_A          365 VHGSGFGE---------------------YGAGHFRAVFL-PPIEILEEAMDRFEKFMKE  402 (406)
T ss_dssp             EEGGGGCG---------------------GGTTBEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred             eCchhcCC---------------------CCCCEEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence            55543210                     01478999999 4  2233444445555444

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.96  E-value=1e-27  Score=240.77  Aligned_cols=289  Identities=16%  Similarity=0.173  Sum_probs=206.2

Q ss_pred             hHHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...++++.+|+++    |    .+.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.
T Consensus        76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g---~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~  147 (407)
T 2zc0_A           76 GIPELREELAAFLKKYDHLEVSPENIVITIG---GTGALDLLGRVLIDPGDVVITENPSYINTLLAFE-----QLGAKIE  147 (407)
T ss_dssp             CCHHHHHHHHHHHHHHSCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCcceEEEecC---HHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHH-----HcCCEEE
Confidence            4577888888887    7    357899999   9999999999999999999999999999887765     3677887


Q ss_pred             EeCCC----CHHHHHHhhhc----C--CceEEE-EecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013079          172 FVDIS----DHEMVNSAIVQ----G--RTKVLY-FESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS---  234 (450)
Q Consensus       172 ~v~~~----d~~~l~~ai~~----~--~t~lv~-i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~---  234 (450)
                      +++.+    |+++|++++ +    +  ++++|+ +++|+||||.+.|++   +|+++|+++|+++|+|++|+.+.+.   
T Consensus       148 ~v~~~~~~~d~~~l~~~l-~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~  226 (407)
T 2zc0_A          148 GVPVDNDGMRVDLLEEKI-KELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGD  226 (407)
T ss_dssp             EEEEETTEECHHHHHHHH-HHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSS
T ss_pred             EcccCCCCCCHHHHHHHH-HhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCC
Confidence            77653    899999998 4    4  788874 689999999999876   9999999999999999999554321   


Q ss_pred             ---ccCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC----CcHHH
Q 013079          235 ---PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI----PHLGL  304 (450)
Q Consensus       235 ---~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~----~~l~~  304 (450)
                         ...+   +.++++.|+||+++ +|.|+ ||+++++++++.+....... ...++.+.+.++..++...    .++..
T Consensus       227 ~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~  303 (407)
T 2zc0_A          227 IVPLKALDNEGRVIVAGTLSKVLG-TGFRI-GWIIAEGEILKKVLMQKQPI-DFCAPAISQYIALEYLKRGYFEKYHLEG  303 (407)
T ss_dssp             CCCGGGGCSSCCEEEEEESTTTTC-TTSCC-EEEECCHHHHHHHHHHHTTT-TSSSCHHHHHHHHHHHHTTHHHHHTTTT
T ss_pred             CCChhhcCCCCCEEEEcccccccC-CCcce-EEEecCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHcCCchHHHHHH
Confidence               1122   46789999999999 89997 99999999988887665422 1223344444444444433    23444


Q ss_pred             HHHHHHHHHHHHHHHHHhC-C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013079          305 RMKEHCHRALIFARRMKKL-G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~-~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~  382 (450)
                      ..+++.++++++.+.|+++ + ..+..|.                   .|.++++.++.......+.+.|...  +| +.
T Consensus       304 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~l~~~--~g-i~  361 (407)
T 2zc0_A          304 ALLGYKEKRDIMLKALENHLPNAEFTKPI-------------------AGMFVMFFLPEGADGISFANELMER--EG-VV  361 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTSCBCCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHH--TC-EE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEecCC-------------------CcEEEEEEcCCCCCHHHHHHHHHHh--CC-eE
Confidence            5566778888999999873 3 3333232                   4568999997322245677776542  23 56


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~  442 (450)
                      +..|+.+...                   +..++.||||++ .   ++.++.++.|.++++++
T Consensus       362 v~~g~~~~~~-------------------~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          362 VVPGKPFYTD-------------------ESGKNAIRLNFS-RPSKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             CBCSGGGCSS-------------------SCCTTEEEEECS-SSCTTHHHHHHHHHHHHHHHH
T ss_pred             EECchhccCC-------------------CCCCCeEEEEeC-CCCHHHHHHHHHHHHHHHHHH
Confidence            6666432110                   012578999999 5   44555666666666544

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.96  E-value=3.1e-28  Score=244.78  Aligned_cols=286  Identities=15%  Similarity=0.118  Sum_probs=203.5

Q ss_pred             hHHHHHHHHHHHh----CC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          100 TVLNLSRQMAALE----GT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       100 ~~~~l~~~iA~l~----g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ...++++.||+++    |.     +.+++|+|   +++|+++++++++++||+|+++.|+|+++...+.     ..|.++
T Consensus        86 g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G---~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~  157 (404)
T 2o1b_A           86 GKEAFKQAIVDFYQRQYNVTLDKEDEVCILYG---TKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVL-----LADGKP  157 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHH-----HTTCEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCcccEEEcCC---cHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHH-----HCCCEE
Confidence            4567888888877    74     47899999   9999999999999999999999999999988775     257777


Q ss_pred             EEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc
Q 013079          171 TFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA  236 (450)
Q Consensus       171 ~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~  236 (450)
                      ..++.+      |+++|++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+     +..
T Consensus       158 ~~v~~~~~~~~~d~~~l~~~l-~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~  236 (404)
T 2o1b_A          158 VPLNLEPPHYLPDWSKVDSQI-IDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSIL  236 (404)
T ss_dssp             EEEECCTTTCCCCGGGSCHHH-HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGG
T ss_pred             EEeccCcccCcCCHHHHHHhh-ccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChh
Confidence            777642      678888888 678999999999999999985   78999999999999999999955432     222


Q ss_pred             CC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHH
Q 013079          237 RL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCH  311 (450)
Q Consensus       237 ~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~  311 (450)
                      .+    +.++++.|+||++|++|+|+ ||+++++++++.+....... ....+.+.+.++..++.. .+++....+++.+
T Consensus       237 ~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~  314 (404)
T 2o1b_A          237 ASENGKDVAIEIYSLSKGYNMSGFRV-GFAVGNKDMIQALKKYQTHT-NAGMFGALQDAAIYALNHYDDFLEEQSNVFKT  314 (404)
T ss_dssp             GSTTHHHHEEEEEESTTTTTCGGGCC-EEEEECHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEEecchhccCchhhe-EeEecCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            32    46899999999999899998 99999999988887655421 123333444444334333 2335555666788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      +++.+.+.|++++..+..|.                   .|.++++.++.......+.+.|..  ..| +.+..|+.+..
T Consensus       315 ~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~l~~~l~~--~~g-i~v~~g~~f~~  372 (404)
T 2o1b_A          315 RRDRFEAMLAKADLPFVHAK-------------------GGIYVWLETPPGYDSEQFEQFLVQ--EKS-ILVAPGKPFGE  372 (404)
T ss_dssp             HHHHHHHHHHHTTCCEECCC-------------------BSSEEEEECCTTCCHHHHHHHHHH--HHC-EECEESGGGCG
T ss_pred             HHHHHHHHHHhcCCeecCCC-------------------cceEEEEeCCCCCCHHHHHHHHHH--HCC-EEEeCchhhCc
Confidence            89999999998866554332                   345789998732123456665432  123 56665644311


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                           ..++.||||++ . + ++.++.+.+.|.++
T Consensus       373 ---------------------~~~~~iRis~~-~-~-~e~l~~~l~~l~~~  399 (404)
T 2o1b_A          373 ---------------------NGNRYVRISLA-L-D-DQKLDEAAIRLTEL  399 (404)
T ss_dssp             ---------------------GGTTEEEEECC-S-C-TTHHHHHHHHHHGG
T ss_pred             ---------------------CCCCeEEEEEc-C-C-HHHHHHHHHHHHHH
Confidence                                 01478999999 6 2 33344444444443

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=5.7e-28  Score=240.82  Aligned_cols=307  Identities=14%  Similarity=0.122  Sum_probs=215.0

Q ss_pred             CccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccC--
Q 013079           66 ATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSS--  140 (450)
Q Consensus        66 tt~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~--  140 (450)
                      ++++.+. .+++.+.+...++++.   .|. ...+..+++++.+++++|.+  .+++|+|   |++|+.+++..+..+  
T Consensus        39 ~~~~~~~v~~a~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~la~~~~~~~~~i~~~~g---gt~a~~~~~~~~~~~~~  111 (397)
T 3f9t_A           39 CSNVLPITRKIVDIFLETNLGDPG---LFK-GTKLLEEKAVALLGSLLNNKDAYGHIVSG---GTEANLMALRCIKNIWR  111 (397)
T ss_dssp             CCCCCTHHHHHHHHHTTCCTTSGG---GBH-HHHHHHHHHHHHHHHHTTCTTCEEEEESC---HHHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHhhcCCCcc---cCh-hHHHHHHHHHHHHHHHhCCCCCCEEEecC---cHHHHHHHHHHHHHHHH
Confidence            3344444 3667776665555432   121 23456778999999999864  5699999   999999999988765  


Q ss_pred             -----------CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC-CceEEEEecCCCCcc
Q 013079          141 -----------GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-RTKVLYFESISNPTL  203 (450)
Q Consensus       141 -----------gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG  203 (450)
                                 ||+|+++.++|+++...+.     ..|.++.+++.+     |+++|++++ ++ ++++|++++|+||||
T Consensus       112 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG  185 (397)
T 3f9t_A          112 EKRRKGLSKNEHPKIIVPITAHFSFEKGRE-----MMDLEYIYAPIKEDYTIDEKFVKDAV-EDYDVDGIIGIAGTTELG  185 (397)
T ss_dssp             HHHHTTCCCCSSCEEEEETTCCTHHHHHHH-----HHTCEEEEECBCTTSSBCHHHHHHHH-HHSCCCEEEEEBSCTTTC
T ss_pred             hhhhhcccCCCCeEEEECCcchhHHHHHHH-----HcCceeEEEeeCCCCcCCHHHHHHHH-hhcCCeEEEEECCCCCCC
Confidence                       8999999999999988775     358888888876     899999999 66 899999999999999


Q ss_pred             cccCHHHHHHHHHhcCCEEEEeCCCCCCC----------------CCccCCCCeEEEeCCCCccccCccceEEEE-EcCH
Q 013079          204 AVANIPELSRLAHDKGVTVVVDNTFSPLV----------------LSPARLGADVVVHSISKFISGGADIIAGAV-CGPA  266 (450)
Q Consensus       204 ~v~~l~~I~~la~~~gi~livD~~~~~~~----------------~~~~~~g~di~~~S~sK~~g~~g~~igG~l-~~~~  266 (450)
                      .+.|+++|.++|+++|+++|+|++|+.+.                ++... ++|+++.|+||+++++ .++ |++ +.++
T Consensus       186 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~-~~~-g~~~~~~~  262 (397)
T 3f9t_A          186 TIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCP-IPS-GGILFKDI  262 (397)
T ss_dssp             CBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCC-SSC-EEEEESSG
T ss_pred             CCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCC-CCc-eEEEEeCH
Confidence            99999999999999999999999994321                12223 7899999999988644 456 555 5555


Q ss_pred             HHHHHHHHHhhhhhhc------cCCC--chHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCc
Q 013079          267 NLVNSMMDLHQGALML------LGPT--MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP  336 (450)
Q Consensus       267 ~~~~~l~~~~~~~~~~------~g~~--~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p  336 (450)
                      .+.+.+..... ....      .+..  ......+.++.  ....+....++..++++++.+.|++++..+..+.     
T Consensus       263 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-----  336 (397)
T 3f9t_A          263 GYKRYLDVDAP-YLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEP-----  336 (397)
T ss_dssp             GGGGGTCEECT-TSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCC-----
T ss_pred             HHHHhhccCCc-cccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCC-----
Confidence            55544321111 1000      0111  12222222222  2334556677778899999999998865543332     


Q ss_pred             hhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079          337 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG  416 (450)
Q Consensus       337 ~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~  416 (450)
                                    .+++++|.++.   ...+.+.|...   | +.++.|+.                          ++
T Consensus       337 --------------~~~~~~~~~~~---~~~~~~~l~~~---g-i~v~~~~~--------------------------~~  369 (397)
T 3f9t_A          337 --------------ILNIVAIEDED---YKEVCKKLRDR---G-IYVSVCNC--------------------------VK  369 (397)
T ss_dssp             --------------SSSEEEEECTT---HHHHHHHHHHT---T-CBCEECSS--------------------------SS
T ss_pred             --------------CccEEEEEeCC---HHHHHHHHHhC---C-eEEeccCC--------------------------CC
Confidence                          35688888876   34566666542   3 44444321                          47


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          417 LVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       417 ~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .||||++ ...+++.++.+.++|.++
T Consensus       370 ~~Ri~~~-~~~~~e~i~~~~~~l~~~  394 (397)
T 3f9t_A          370 ALRIVVM-PHIKREHIDNFIEILNSI  394 (397)
T ss_dssp             EEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEc-CCCCHHHHHHHHHHHHHh
Confidence            8999999 877888888888887765

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.96  E-value=1.7e-27  Score=241.04  Aligned_cols=293  Identities=15%  Similarity=0.150  Sum_probs=204.7

Q ss_pred             CCCChh-HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCC
Q 013079           95 RHFNPT-VLNLSRQMAALEG----------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP  163 (450)
Q Consensus        95 r~~~~~-~~~l~~~iA~l~g----------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~  163 (450)
                      ++..+. ..++++.+|++++          .+.+++|+|   +++++.+++++++++||+|+++.|+|+++...+.   .
T Consensus        78 ~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G---~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~---~  151 (428)
T 1iay_A           78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG---ATGANETIIFCLADPGDAFLVPSPYYPAFNRDLR---W  151 (428)
T ss_dssp             HCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEH---HHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT---T
T ss_pred             CCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccC---hHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHH---H
Confidence            344443 6788888888875          467899999   9999999999999999999999999999865431   1


Q ss_pred             CccCeeEEEeCCC-------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013079          164 RACNITTTFVDIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTF  228 (450)
Q Consensus       164 ~~~g~~v~~v~~~-------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~  228 (450)
                       ..|.++..++.+       |++++++++..     .++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|
T Consensus       152 -~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~  230 (428)
T 1iay_A          152 -RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIY  230 (428)
T ss_dssp             -TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTT
T ss_pred             -hcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccc
Confidence             268888888753       78999988832     37899999999999999999   999999999999999999999


Q ss_pred             CCCCCC------ccCC--C-------Ce--EEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHH
Q 013079          229 SPLVLS------PARL--G-------AD--VVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPK  290 (450)
Q Consensus       229 ~~~~~~------~~~~--g-------~d--i~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~  290 (450)
                      ..+.+.      ...+  .       .|  +++.|+||.+|++|.|+ |+++. ++++++.+.....   ....+.+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  306 (428)
T 1iay_A          231 AATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRV-GIIYSFNDDVVNCARKMSS---FGLVSTQTQY  306 (428)
T ss_dssp             GGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCE-EEEEESCHHHHHHHHHHHT---TSCCCHHHHH
T ss_pred             cccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCceE-EEEEeCCHHHHHHHHHHHh---cccCCHHHHH
Confidence            553321      1111  1       45  89999999999999998 88887 6778887765433   1223333343


Q ss_pred             HHHHHHccCC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH----
Q 013079          291 VAFELSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE----  362 (450)
Q Consensus       291 ~a~~~~~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~----  362 (450)
                      ++..++....    ++.+..+++.++++++.+.|++++..+..|                   ..|.++++.++..    
T Consensus       307 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-------------------~~g~~~~~~~~~~~~~~  367 (428)
T 1iay_A          307 FLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKN-------------------NAGLFCWMDLRPLLRES  367 (428)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC-------------------SSSSEEEEECGGGCSSS
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-------------------CeeEEEEEechhhcCCC
Confidence            3333333222    234455567888999999999876544322                   1466889998742    


Q ss_pred             --HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          363 --EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       363 --~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                        .....+.+.|...  +| +.+..|+.+..                     ..++.||||++ .. +++.++.+.++|.
T Consensus       368 ~~~~~~~l~~~l~~~--~g-i~v~~~~~~~~---------------------~~~~~iRis~~-~~-~~e~i~~~~~~l~  421 (428)
T 1iay_A          368 TFDSEMSLWRVIIND--VK-LNVSPGSSFEC---------------------QEPGWFRVCFA-NM-DDGTVDIALARIR  421 (428)
T ss_dssp             SHHHHHHHHHHHHHT--SC-EECEEGGGGTC---------------------SSSSEEEEECS-SS-CHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHh--CC-EEEeCchhhCC---------------------CCCCEEEEEEe-cC-CHHHHHHHHHHHH
Confidence              2345677776531  23 55555533211                     01478999999 53 4455566666665


Q ss_pred             Hhh
Q 013079          441 RMQ  443 (450)
Q Consensus       441 ~~~  443 (450)
                      ++.
T Consensus       422 ~~l  424 (428)
T 1iay_A          422 RFV  424 (428)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.96  E-value=2.2e-27  Score=240.16  Aligned_cols=288  Identities=18%  Similarity=0.180  Sum_probs=196.5

Q ss_pred             hhHHHHHHHHHHHhCC-----------CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccC
Q 013079           99 PTVLNLSRQMAALEGT-----------EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~-----------~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      +.++.+.+.+++..|.           +.+++|+|   +++|+++++.+++++||+|+++.|+|+++...+.     ..|
T Consensus        82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~-----~~g  153 (425)
T 2r2n_A           82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSG---SQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLH-----PLG  153 (425)
T ss_dssp             HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESS---HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHG-----GGT
T ss_pred             HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCc---HHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcC
Confidence            3445555555555563           36899999   9999999999999999999999999999887764     367


Q ss_pred             eeEEEeCCC----CHHHHHHhhhc-----------CCceEEEE-ecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCC
Q 013079          168 ITTTFVDIS----DHEMVNSAIVQ-----------GRTKVLYF-ESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTF  228 (450)
Q Consensus       168 ~~v~~v~~~----d~~~l~~ai~~-----------~~t~lv~i-~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~  228 (450)
                      .++..++.+    |+++|++++..           +++++|++ ++||||||.+.+.+   +|+++|+++|+++|+|++|
T Consensus       154 ~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~  233 (425)
T 2r2n_A          154 CNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY  233 (425)
T ss_dssp             CEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence            788777653    88999998831           46888877 68999999998755   9999999999999999999


Q ss_pred             CCCCCC------ccCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC
Q 013079          229 SPLVLS------PARL---GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI  299 (450)
Q Consensus       229 ~~~~~~------~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~  299 (450)
                      +.+.+.      ...+   +.++++.|+||.++ +|+|+ ||+++++++++.+....... ....+.+.+.++..++...
T Consensus       234 ~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRi-G~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~  310 (425)
T 2r2n_A          234 YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRI-GFLTGPKPLIERVILHIQVS-TLHPSTFNQLMISQLLHEW  310 (425)
T ss_dssp             GGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCC-EEEEEEHHHHHHHHHHHHTT-TCSSCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCCccccCCCCCEEEEccchhhcc-Cccce-EEEecCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhc
Confidence            544321      1222   56799999999998 99998 99999999988887655421 1233334444443333321


Q ss_pred             ------CcHHHHHHHHHHHHHHHHHHHHhC--CC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHH-HH
Q 013079          300 ------PHLGLRMKEHCHRALIFARRMKKL--GL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANR-LM  369 (450)
Q Consensus       300 ------~~l~~~~~~~~~~~~~l~~~L~~~--~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~-~~  369 (450)
                            +++....+++.++++.+.+.|+++  +. .+..|.                   .|.++++.++....... +.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~-------------------~g~~~~~~~~~~~~~~~~~~  371 (425)
T 2r2n_A          311 GEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPA-------------------AGMFLWIKVKGINDVKELIE  371 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCS-------------------BSSEEEEEETTCSCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCC-------------------ceEEEEEEeCCCCCHHHHHH
Confidence                  234445556788889999999874  33 233332                   56789999974211223 34


Q ss_pred             HHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          370 NYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       370 ~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      +.+..   .| +.+..|+.+....                  +...+.||||++ .. .++.++.+.+.|.
T Consensus       372 ~~l~~---~g-v~v~pg~~f~~~~------------------~~~~~~iRis~~-~~-~~~~i~~~~~~l~  418 (425)
T 2r2n_A          372 EKAVK---MG-VLMLPGNAFYVDS------------------SAPSPYLRASFS-SA-SPEQMDVAFQVLA  418 (425)
T ss_dssp             THHHH---TT-EECEEGGGGSSST------------------TSCCCEEEEECS-SC-CHHHHHHHHHHHH
T ss_pred             HHHHH---CC-cEEechhhhcCCC------------------CCCCCEEEEEeC-CC-CHHHHHHHHHHHH
Confidence            44443   23 5666665432100                  012478999998 54 3333444444443

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.96  E-value=9.4e-28  Score=240.43  Aligned_cols=290  Identities=18%  Similarity=0.204  Sum_probs=206.0

Q ss_pred             hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      +...++++.+|+++|.  +.+++|+|   +++|+++++.+++++||+|++..|.|+++...+.     ..|.++..++.+
T Consensus        74 ~~~~~l~~~la~~~g~~~~~v~~~~g---~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~~g~~~~~~~~~  145 (397)
T 2zyj_A           74 EGYAPLRAFVAEWIGVRPEEVLITTG---SQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFR-----LQGPRFLTVPAG  145 (397)
T ss_dssp             TCCHHHHHHHHHHHTSCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEEEEEE
T ss_pred             CCCHHHHHHHHHHhCCChhhEEEecc---HHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHH-----HcCCEEEecCcC
Confidence            3467899999999985  56899999   9999999999999999999999999999988775     367777777653


Q ss_pred             ----CHHHHHHhhhcCCceEEE-EecCCCCcccccCHH---HHHHHHHhcCCEEEEeCCCCCCCCC------ccCC----
Q 013079          177 ----DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIP---ELSRLAHDKGVTVVVDNTFSPLVLS------PARL----  238 (450)
Q Consensus       177 ----d~~~l~~ai~~~~t~lv~-i~~~~NptG~v~~l~---~I~~la~~~gi~livD~~~~~~~~~------~~~~----  238 (450)
                          |+++|++++.+.++++|+ +++|+||||.+.+.+   +|+++|+++|+++|+|++|+.+.+.      ...+    
T Consensus       146 ~~~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  225 (397)
T 2zyj_A          146 EEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA  225 (397)
T ss_dssp             TTEECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc
Confidence                899999999334788875 689999999998754   8999999999999999999554321      1222    


Q ss_pred             --CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC--CcHHHHHHHHHHHHH
Q 013079          239 --GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRMKEHCHRAL  314 (450)
Q Consensus       239 --g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~~~~~~~~~  314 (450)
                        +.++++.|+||+++ +|.|+ ||++.++++++.+....... ...++.+.+.++..++...  +++....+++.++++
T Consensus       226 ~~~~~i~~~s~sK~~~-~G~r~-G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  302 (397)
T 2zyj_A          226 GYPGVIYLGSFSKVLS-PGLRV-AFAVAHPEALQKLVQAKQGA-DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQ  302 (397)
T ss_dssp             TCCCEEEEEESTTTTC-GGGCC-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeccccccc-cccee-EEEecCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence              34589999999999 89998 99999999988887654422 1223344444444444433  234555566788889


Q ss_pred             HHHHHHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079          315 IFARRMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       315 ~l~~~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      .+.+.|+++   +..+..|.                   .|.++++.++.......+.+.|...   | +.+..|+.+..
T Consensus       303 ~l~~~L~~~~~~g~~~~~~~-------------------~g~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~f~~  359 (397)
T 2zyj_A          303 AMLHALDREVPKEVRYTRPK-------------------GGMFVWMELPKGLSAEGLFRRALEE---N-VAFVPGGPFFA  359 (397)
T ss_dssp             HHHHHHHHHSCTTSEECCCS-------------------BSSEEEEECSTTCCHHHHHHHHHHT---T-EEEEESGGGCT
T ss_pred             HHHHHHHHHCCCCeEEccCC-------------------ccEEEEEEcCCCCCHHHHHHHHHHC---C-CEEechHHhcC
Confidence            999999874   34543332                   4668999997322245677766542   3 56655543211


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM  442 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~  442 (450)
                      .                   +..++.||||++ ..   ++++.++.|.++++++
T Consensus       360 ~-------------------~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~  393 (397)
T 2zyj_A          360 N-------------------GGGENTLRLSYA-TLDREGIAEGVRRLGRALKGL  393 (397)
T ss_dssp             T-------------------SCCTTEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             C-------------------CCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Confidence            0                   112578999999 64   3344455555555444

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.96  E-value=1.1e-27  Score=237.63  Aligned_cols=273  Identities=15%  Similarity=0.212  Sum_probs=201.5

Q ss_pred             HHHHHHHHHH------hC--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079          102 LNLSRQMAAL------EG--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus       102 ~~l~~~iA~l------~g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      .++++.+|++      .+  .+.+++|+|   +++++++++.+++++||+|+++.|+|+++...+.     ..|.++.++
T Consensus        72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G---~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-----~~g~~~~~v  143 (369)
T 3cq5_A           72 VELRDELAAYITKQTGVAVTRDNLWAANG---SNEILQQLLQAFGGPGRTALGFQPSYSMHPILAK-----GTHTEFIAV  143 (369)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHH-----HTTCEEEEE
T ss_pred             HHHHHHHHHhhhhcccCCCChHhEEECCC---hHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHH-----HcCCEEEEe
Confidence            5788888888      34  356899999   9999999999999999999999999999887764     257777777


Q ss_pred             CCC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--CccC----CC-C
Q 013079          174 DIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPAR----LG-A  240 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~~~~----~g-~  240 (450)
                      +.+     |++++++++ ++ ++++|++++|+||||.+.|++++.++|+.+++++|+|++|+.+..  +...    .+ .
T Consensus       144 ~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  222 (369)
T 3cq5_A          144 SRGADFRIDMDVALEEI-RAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTK  222 (369)
T ss_dssp             ECCTTSSCCHHHHHHHH-HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTT
T ss_pred             cCCcCCCCCHHHHHHHh-hccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCC
Confidence            643     789999998 55 899999999999999999999999999999999999999954442  2222    35 7


Q ss_pred             eEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013079          241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRM  320 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L  320 (450)
                      ++++.|+||++|++|.|+ ||++.++++++.+......   ...+.+.+.++..++...+++....+++.++++++.+.|
T Consensus       223 ~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L  298 (369)
T 3cq5_A          223 LVVSRTMSKAFDFAGGRL-GYFVANPAFIDAVMLVRLP---YHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARL  298 (369)
T ss_dssp             EEEEEESSSTTSCGGGCC-EEEEECTHHHHHHHTTSCT---TCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             EEEEEechHhcCCcccce-EEEEeCHHHHHHHHHcCCC---CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999889998 9999998888877654431   223333333343344333345556667788899999999


Q ss_pred             HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccC
Q 013079          321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS  400 (450)
Q Consensus       321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~  400 (450)
                      ++.+..+. |.                   .|+++++.++.  ....+.+.|..   .| +.+..|              
T Consensus       299 ~~~g~~~~-~~-------------------~~~~~~~~~~~--~~~~l~~~l~~---~g-i~v~~~--------------  338 (369)
T 3cq5_A          299 EELGYAVV-PS-------------------ESNFVFFGDFS--DQHAAWQAFLD---RG-VLIRDV--------------  338 (369)
T ss_dssp             HHHTCEEE-CC-------------------SSSEEEEECCS--SHHHHHHHHHH---TT-EECBCC--------------
T ss_pred             HhCCCEEC-CC-------------------CCeEEEEECCC--CHHHHHHHHHH---CC-EEEEEC--------------
Confidence            88666554 32                   35688998871  24556666653   23 444433              


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       401 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                                 + .++.+|||++ .   ++.++.+.++|.++.
T Consensus       339 -----------~-~~~~iRis~~-~---~~~i~~~~~~l~~~~  365 (369)
T 3cq5_A          339 -----------G-IAGHLRTTIG-V---PEENDAFLDAAAEII  365 (369)
T ss_dssp             -----------S-CTTEEEEECC-C---HHHHHHHHHHHHHHH
T ss_pred             -----------C-CCCeEEEEeC-C---HHHHHHHHHHHHHHH
Confidence                       0 1468999999 3   344566666666543

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.96  E-value=1.4e-27  Score=235.02  Aligned_cols=279  Identities=15%  Similarity=0.172  Sum_probs=202.2

Q ss_pred             hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-
Q 013079           99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-  175 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-  175 (450)
                      +...+++++||++++.  +.+++|+|   +++|++++++++.  ||+|+++.|+|.++...+.     ..|.++.+++. 
T Consensus        50 ~~~~~lr~~la~~~~~~~~~i~~t~g---~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~-----~~g~~~~~v~~~  119 (350)
T 3fkd_A           50 PDAGTLRQMLAKRNSVDNNAILVTNG---PTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACR-----MYEHEVCFYPSN  119 (350)
T ss_dssp             TTCHHHHHHHHHHTTCCGGGEEEESH---HHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHH-----HTTCEEEEEETT
T ss_pred             CcHHHHHHHHHHHhCcCHHHEEEcCC---HHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHH-----HcCCeEEEEecC
Confidence            3347899999999986  47999999   9999999999887  9999999999999987775     36889999887 


Q ss_pred             CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcC-CEEEEeCCCCCCCCCc-------cCCCCeEEEeCC
Q 013079          176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG-VTVVVDNTFSPLVLSP-------ARLGADVVVHSI  247 (450)
Q Consensus       176 ~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~g-i~livD~~~~~~~~~~-------~~~g~di~~~S~  247 (450)
                      ++.+.    +..+++++|++++|+||||.+.|+++|.++++.++ .++|+|++|..+....       ...+.++++.|+
T Consensus       120 ~~~~~----~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~  195 (350)
T 3fkd_A          120 EDIGE----ADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSF  195 (350)
T ss_dssp             SCGGG----SCCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEES
T ss_pred             Ccccc----CccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecC
Confidence            44322    21268999999999999999999999999998875 7999999996554321       123577999999


Q ss_pred             CCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-Ce
Q 013079          248 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LK  326 (450)
Q Consensus       248 sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~  326 (450)
                      ||.++++|.|+ ||++.++++++.+......   ...+.+.+.++..++.....+.++++++.++++++.+.|++++ ..
T Consensus       196 sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~  271 (350)
T 3fkd_A          196 SHAYGIPGLRI-GYIVANKDFMKRVAAFSTP---WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGVE  271 (350)
T ss_dssp             HHHHSCGGGCC-EEEECCHHHHHHHHTTCCT---TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTEE
T ss_pred             chhccCcchhe-EeEEeCHHHHHHHHHhCCC---CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence            99999999998 9999999999888765441   2223334444444444433233344444588899999998874 34


Q ss_pred             eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHH
Q 013079          327 VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAE  406 (450)
Q Consensus       327 v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~  406 (450)
                      + .|.                   .|+++++.++.. ....+.+.|..  ..| +.++.|+.+.                
T Consensus       272 ~-~~~-------------------~~~~~~~~~~~~-~~~~l~~~L~~--~~g-i~v~~g~~f~----------------  311 (350)
T 3fkd_A          272 V-HPS-------------------GTTFFLLRLKKG-TAAELKKYMLE--EYN-MLIRDASNFR----------------  311 (350)
T ss_dssp             E-CCC-------------------SSSEEEEEESSS-CHHHHHHHHHH--TTC-EECEECTTST----------------
T ss_pred             E-CCC-------------------CCcEEEEECCCC-CHHHHHHHHHH--HCC-EEEEeCccCC----------------
Confidence            4 232                   456888999843 35677777764  123 6777775541                


Q ss_pred             HHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          407 EKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       407 ~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                           +..++.||||++ .   .+.++.|.++|+++.+
T Consensus       312 -----~~~~~~iRis~~-~---~~~~~~l~~al~~~~~  340 (350)
T 3fkd_A          312 -----GLDESYVRITTQ-R---PAQNQLFIKALETFLE  340 (350)
T ss_dssp             -----TCCTTEEEEECC-C---HHHHHHHHHHHHHHHT
T ss_pred             -----CCCCCEEEEEcC-C---HHHHHHHHHHHHHHHH
Confidence                 122588999999 3   3345566666666543

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.96  E-value=1.1e-27  Score=237.95  Aligned_cols=283  Identities=15%  Similarity=0.133  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079          102 LNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus       102 ~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      .++++.+|++++        .+.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.++
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g---~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~  132 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARPEWIFPIPD---VVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLS-----ATQREGIFI  132 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHH-----HHTCCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEeCC---hHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHH-----HcCCEEEEc
Confidence            445666666554        467999999   9999999999999999999999999999987775     257788888


Q ss_pred             CCC---CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----cC------
Q 013079          174 DIS---DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----AR------  237 (450)
Q Consensus       174 ~~~---d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----~~------  237 (450)
                      +.+   |+++|++++ ++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+..    ..      
T Consensus       133 ~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~  211 (377)
T 3fdb_A          133 DATGGINLHDVEKGF-QAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA  211 (377)
T ss_dssp             ECTTSCCHHHHHHHH-HTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH
T ss_pred             cCCCCCCHHHHHHHh-ccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC
Confidence            876   999999999 778999999999999999975   6678888999999999999995543321    11      


Q ss_pred             CCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHHHHHHHHH
Q 013079          238 LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKEHCHRALI  315 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~~~~~~~~  315 (450)
                      .+.++++.|+||.+|++|.|+ ||++. ++++++.+..... ......+.+.+.++..++.. .+++..+.+++.+++++
T Consensus       212 ~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  289 (377)
T 3fdb_A          212 ASVCITITAPSKAWNIAGLKC-AQIIFSNPSDAEHWQQLSP-VIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDF  289 (377)
T ss_dssp             HHHEEEEECSTTTTTCGGGCC-EEEECCSHHHHHHHHHSCH-HHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeChHhccCcchhh-eEEEeCCHHHHHHHHHHHH-hhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            145699999999999999998 87665 7888888876543 11123333444443344433 23356666778899999


Q ss_pred             HHHHHHh-C-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccc
Q 013079          316 FARRMKK-L-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS  393 (450)
Q Consensus       316 l~~~L~~-~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~  393 (450)
                      +.+.|++ + +..+..|.                   .+.++++.++.......+...+..  +.| +.+..|+.+... 
T Consensus       290 l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~--~~g-i~v~~g~~~~~~-  346 (377)
T 3fdb_A          290 LLHEIPKRIPGAKITPMQ-------------------ATYLMWIDFRDTTIEGSPSEFFIE--KAK-VAMNDGAWFGED-  346 (377)
T ss_dssp             HHHHHHHHSTTCEECCCS-------------------BCSEEEEECTTSCCCSCHHHHHHH--HHC-EECEEGGGGCGG-
T ss_pred             HHHHHHhhCCCceEecCC-------------------eeEEEEEECcccCCCHHHHHHHHH--hCC-EEecCChhccCC-
Confidence            9999988 4 44554332                   345668888742001233333322  123 566666543221 


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          394 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                          .++.||||++ .  .++.++.+.++|.+
T Consensus       347 --------------------~~~~~Ris~~-~--~~e~i~~~l~~l~~  371 (377)
T 3fdb_A          347 --------------------GTGFCRLNFA-T--SREVLEEAIDRMAK  371 (377)
T ss_dssp             --------------------GTTEEEEECC-S--CHHHHHHHHHHHHH
T ss_pred             --------------------CCCEEEEEeC-C--CHHHHHHHHHHHHH
Confidence                                1578999999 6  34444444444444

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.96  E-value=4.6e-27  Score=234.75  Aligned_cols=269  Identities=18%  Similarity=0.132  Sum_probs=187.6

Q ss_pred             HHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079          104 LSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus       104 l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      +++.||+++    |    .+.+++|+|   +++|+++++++++++||+|+++.|.|+++...+.     ..|.++..++.
T Consensus        69 lr~~la~~l~~~~g~~~~~~~v~~t~g---~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~~g~~~~~v~~  140 (390)
T 1d2f_A           69 FLAAIAHWFSTQHYTAIDSQTVVYGPS---VIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIE-----GNQRTVMPVAL  140 (390)
T ss_dssp             HHHHHHHHHHHHSCCCCCGGGEEEESC---HHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHEEEcCC---HHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHH-----HCCCEEEEeec
Confidence            666666654    4    357999999   9999999999999999999999999999988775     25777777664


Q ss_pred             --------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------ccCC
Q 013079          176 --------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------PARL  238 (450)
Q Consensus       176 --------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~~~~  238 (450)
                              .|+++|++++...++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|+.+.+.      ...+
T Consensus       141 ~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~  220 (390)
T 1d2f_A          141 EKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV  220 (390)
T ss_dssp             EECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT
T ss_pred             ccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHc
Confidence                    38999999993348999999999999999977   889999999999999999999554321      1223


Q ss_pred             C--C-eEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhc-cCCCchHHHHHHHHccC-CcHHHHHHHHHHH
Q 013079          239 G--A-DVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALML-LGPTMNPKVAFELSERI-PHLGLRMKEHCHR  312 (450)
Q Consensus       239 g--~-di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~-~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~  312 (450)
                      .  . |. +.|+||.+|++|.|+ ||++.+ +++++.+.....+.... .++.+.+.++..++... +++....+++.++
T Consensus       221 ~~~~~d~-~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  298 (390)
T 1d2f_A          221 ARGDWAL-LTSGSKSFNIPALTG-AYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN  298 (390)
T ss_dssp             CCSSEEE-EECSHHHHTCGGGCC-EEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             chhhHhh-ccCccHhhcccChhh-eEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2  2 77 999999999899998 988874 78888776544301111 22233333333333322 3345556667888


Q ss_pred             HHHHHHHHHh-CC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccccccccc
Q 013079          313 ALIFARRMKK-LG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       313 ~~~l~~~L~~-~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      ++.+.+.|++ ++ ..+..|                   ..|.++++.++.. .....+.+.|..  ..| +.+..|+.+
T Consensus       299 ~~~l~~~L~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~--~~g-i~v~~g~~f  356 (390)
T 1d2f_A          299 LTYIADKMNAAFPELNWQIP-------------------QSTYLAWLDLRPLNIDDNALQKALIE--QEK-VAIMPGYTY  356 (390)
T ss_dssp             HHHHHHHHHHHCSSCCCCCC-------------------SBCSEEEEECGGGCCCHHHHHHHHHH--TTC-EECEEGGGG
T ss_pred             HHHHHHHHHhhCCCCEEecC-------------------CccEEEEEEccccCCCHHHHHHHHHH--HcC-EEeeCcccc
Confidence            8999999987 53 333222                   1344668888632 124567776652  123 566666443


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG  426 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~  426 (450)
                      ..                     ..++.||||++ ..
T Consensus       357 ~~---------------------~~~~~~Ris~~-~~  371 (390)
T 1d2f_A          357 GE---------------------EGRGFVRLNAG-CP  371 (390)
T ss_dssp             CG---------------------GGTTEEEEECC-SC
T ss_pred             CC---------------------CCCCeEEEEec-CC
Confidence            11                     01478999999 63

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.96  E-value=1.9e-27  Score=240.72  Aligned_cols=297  Identities=13%  Similarity=0.067  Sum_probs=207.5

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHH--HHHHHHhcc--C----------CCEEEEeCCCchhH
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAI--SSVLMQLCS--S----------GGHVVAARTLYGGT  154 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai--~~al~~l~~--~----------gd~Vi~~~~~y~~~  154 (450)
                      +.|+.  .....++|+.||++++.  +++++|+|   +++++  ++++.+++.  +          ||+|+++.|+|+++
T Consensus        72 ~~Y~~--~~g~~~lr~~ia~~~~~~~~~i~~t~G---~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~  146 (427)
T 3ppl_A           72 RNYGG--LDGIVDIRQIWADLLGVPVEQVLAGDA---SSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRH  146 (427)
T ss_dssp             TSSCC--SSCCHHHHHHHHHHHTSCGGGEEECSS---CHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHH
T ss_pred             cCCCC--CCCcHHHHHHHHHHhCCCcceEEEeCC---cHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHH
Confidence            44543  33467899999999986  56899999   99999  588888777  6          89999999999999


Q ss_pred             HHHHHHhCCCccCeeEEEeCCC----CHHHHHHhhhcCCceEEEEe-cCCCCcccccCHH---HHHHHH-HhcCCEEEEe
Q 013079          155 HALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGRTKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVD  225 (450)
Q Consensus       155 ~~~~~~~~~~~~g~~v~~v~~~----d~~~l~~ai~~~~t~lv~i~-~~~NptG~v~~l~---~I~~la-~~~gi~livD  225 (450)
                      ...+.     ..|.++..++.+    |+++|++++.++++++|+++ ++|||||.+.+.+   +|+++| +++|+++|+|
T Consensus       147 ~~~~~-----~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~D  221 (427)
T 3ppl_A          147 FSITE-----RFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWD  221 (427)
T ss_dssp             HHHHH-----HTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE
T ss_pred             HHHHH-----HcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEE
Confidence            88875     367788777654    89999999844689999876 8999999998876   888888 9999999999


Q ss_pred             CCCCCCCCC--------cc-------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHH
Q 013079          226 NTFSPLVLS--------PA-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPK  290 (450)
Q Consensus       226 ~~~~~~~~~--------~~-------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~  290 (450)
                      ++|..+.+.        ..       ..+.++++.|+||+ +++|+|+ ||+++++++++.+....... ....+.+.+.
T Consensus       222 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~-G~~~~~~~l~~~~~~~~~~~-~~~~~~~~q~  298 (427)
T 3ppl_A          222 NAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGV-SFFLTSAENRKWYTGHAGIR-GIGPNKVNQL  298 (427)
T ss_dssp             CTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSC-EEEECCHHHHHHHHHHHHHH-CSCCCHHHHH
T ss_pred             CCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-cCcCccE-EEEEcCHHHHHHHHHHhhcc-cCCCCHHHHH
Confidence            999663321        11       23678999999999 6689998 99999999998887665521 1233444455


Q ss_pred             HHHHHHccC----CcHHHHHHHHHHHHHHHHHHHHhC----C-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          291 VAFELSERI----PHLGLRMKEHCHRALIFARRMKKL----G-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       291 ~a~~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~~----~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      ++..++...    +++....+.+.++++.+.+.|++.    + ..+..|.                   .|.++++.++.
T Consensus       299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-------------------~g~~~~~~~~~  359 (427)
T 3ppl_A          299 AHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-------------------GGYFISLDVVP  359 (427)
T ss_dssp             HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-------------------BSSCEEEECST
T ss_pred             HHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-------------------ccEEEEEECCc
Confidence            544444431    223344445667777777777552    2 2333332                   47789999985


Q ss_pred             HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHH
Q 013079          362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKA  438 (450)
Q Consensus       362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~a  438 (450)
                      .. ...+.+.+...   | +.+..|+.+....                 .+..++.||||++ ..   ++++.++.|.++
T Consensus       360 ~~-~~~~~~~l~~~---g-v~v~~~g~~~~~~-----------------~~~~~~~~Ris~~-~~~~~~i~~~~~~l~~~  416 (427)
T 3ppl_A          360 GT-ASRVAELAKEA---G-IALTGAGSSYPLR-----------------QDPENKNLRLAPS-LPPVEELEVAMDGVATC  416 (427)
T ss_dssp             TC-HHHHHHHHHHT---T-EECCCTTTTSGGG-----------------CCTTSCEEEECCS-SSCHHHHHHHHHHHHHH
T ss_pred             ch-HHHHHHHHHHC---C-CEEecCcCcCCCC-----------------CCCCCCeEEEECC-CCCHHHHHHHHHHHHHH
Confidence            32 55666666642   3 5666644322100                 0112588999999 63   344445556666


Q ss_pred             HHHh
Q 013079          439 LSRM  442 (450)
Q Consensus       439 l~~~  442 (450)
                      +.++
T Consensus       417 l~~~  420 (427)
T 3ppl_A          417 VLLA  420 (427)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.96  E-value=1.4e-27  Score=240.50  Aligned_cols=285  Identities=15%  Similarity=0.153  Sum_probs=195.7

Q ss_pred             hHHHHHHHHHHHhC--------------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCc
Q 013079          100 TVLNLSRQMAALEG--------------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA  165 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~  165 (450)
                      ...++++.+|++++              .+.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     .
T Consensus        76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g---~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~-----~  147 (416)
T 1bw0_A           76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG---GSHGILMAITAICDAGDYALVPQPGFPHYETVCK-----A  147 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----H
T ss_pred             CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC---hHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHH-----H
Confidence            45678888888877              467999999   9999999999999999999999999999887764     2


Q ss_pred             cCeeEEEeCC-------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079          166 CNITTTFVDI-------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS-  234 (450)
Q Consensus       166 ~g~~v~~v~~-------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~-  234 (450)
                      .|.++..++.       .|+++|++++ ++++++|++++|+||||.+.|   +++|+++|+++|+++|+|++|..+.+. 
T Consensus       148 ~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g  226 (416)
T 1bw0_A          148 YGIGMHFYNCRPENDWEADLDEIRRLK-DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG  226 (416)
T ss_dssp             TTCEEEEEEEEGGGTTEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCS
T ss_pred             cCcEEEEeecCcccCCCCCHHHHHHHh-ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence            5777777653       2799999999 778999999999999999998   999999999999999999999554321 


Q ss_pred             ---------ccCC---CCeEEEeCCCCccccCccceEEEEEcCH--HHHHHHHH-Hhh-hhhhccCCCchHHHHHHHHcc
Q 013079          235 ---------PARL---GADVVVHSISKFISGGADIIAGAVCGPA--NLVNSMMD-LHQ-GALMLLGPTMNPKVAFELSER  298 (450)
Q Consensus       235 ---------~~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~--~~~~~l~~-~~~-~~~~~~g~~~~~~~a~~~~~~  298 (450)
                               ...+   +.++++.|+||.++++|+|+ ||++.++  ++++.+.. .+. .......+.+.+.++..++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  305 (416)
T 1bw0_A          227 KDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRL-GWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLN  305 (416)
T ss_dssp             SCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCC-EEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHS
T ss_pred             CCCCCCccCHHHccCCCcEEEEecchhhCCCCCceE-EEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhc
Confidence                     1111   24688999999999999998 8887654  34443331 111 001122333444444444432


Q ss_pred             --CCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-----HHHHHHHH
Q 013079          299 --IPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-----EKANRLMN  370 (450)
Q Consensus       299 --~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-----~~~~~~~~  370 (450)
                        ..++....+++.++++++.+.|++++ ..+..|.                   .|.++++.++..     .....+..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~  366 (416)
T 1bw0_A          306 TPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR-------------------GAMYLMSRIDLEKYRDIKTDVEFFE  366 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC-------------------BTTEEEEEECGGGBSSCCSHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC-------------------eeEEEEEeCCHHHcCCCCCHHHHHH
Confidence              23355666777888999999998773 3433232                   456788888621     12455666


Q ss_pred             Hh-hccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHH
Q 013079          371 YL-QNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSR  441 (450)
Q Consensus       371 ~l-~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~  441 (450)
                      .| ..   .| +.+..|+.+.                       .++.+|||++ ..  ++++.++.|.+++++
T Consensus       367 ~l~~~---~g-i~v~~g~~f~-----------------------~~~~iRis~~-~~~e~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          367 KLLEE---EN-VQVLPGTIFH-----------------------APGFTRLTTT-RPVEVYREAVERIKAFCQR  412 (416)
T ss_dssp             HHHHH---HC-EECEEGGGGT-----------------------CTTEEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH---CC-EEEecccccC-----------------------CCCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence            55 33   23 5555553321                       1478999999 52  233333444444443

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.96  E-value=7.1e-28  Score=240.02  Aligned_cols=288  Identities=15%  Similarity=0.178  Sum_probs=207.5

Q ss_pred             hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      +...++++.||+++|.+  .+++|+|   |++|+++++.++ +++||+|+++.++|+++...+...... .|.++.+++.
T Consensus        59 ~~~~~l~~~la~~~g~~~~~v~~~~g---~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~v~~  134 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPNTITITDN---VTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR-FGITYRFFPV  134 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESS---HHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH-HCCEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCHHHEEEeCC---hHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH-hCcEEEEEcC
Confidence            67889999999999975  6899999   999999999998 889999999999999987654322222 5888888876


Q ss_pred             C-------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHH----hcCCEEEEeCCCC--CCCCCccCCCCeE
Q 013079          176 S-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH----DKGVTVVVDNTFS--PLVLSPARLGADV  242 (450)
Q Consensus       176 ~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~----~~gi~livD~~~~--~~~~~~~~~g~di  242 (450)
                      +       |+++|++++ ++++++|++++|+||||.+.|+++|.++|+    ++|+++|+|++|+  ....+....++|+
T Consensus       135 ~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~  213 (390)
T 1elu_A          135 AATLNQGDAAAVLANHL-GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDY  213 (390)
T ss_dssp             GGGSSSSCHHHHHHTTC-CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSE
T ss_pred             CCCCCccchHHHHHHhc-CCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCE
Confidence            3       789999999 788999999999999999999999999999    9999999999983  2222333457899


Q ss_pred             EEeCCCC-ccccCccceEEEEEcCHHHHHHHHHHhhhh-------------------hhccCCC--chHHHHHHHHc---
Q 013079          243 VVHSISK-FISGGADIIAGAVCGPANLVNSMMDLHQGA-------------------LMLLGPT--MNPKVAFELSE---  297 (450)
Q Consensus       243 ~~~S~sK-~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------------------~~~~g~~--~~~~~a~~~~~---  297 (450)
                      ++.|+|| .+++.|  + |+++.++++++.+.....++                   ....+..  ....++..++.   
T Consensus       214 ~~~s~~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~  290 (390)
T 1elu_A          214 YAFTGHKWFAGPAG--V-GGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ  290 (390)
T ss_dssp             EEEESSSTTCCCTT--C-EEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH
T ss_pred             EEccccccccCCCc--e-EEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999 555444  6 99988887776654321000                   0011221  11222222222   


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079          298 RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA  376 (450)
Q Consensus       298 ~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~  376 (450)
                      ...++....+++.++++++.+.|+++ +.++..|. +                +.|+++.|.++.......+.+.|..  
T Consensus       291 ~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~l~~--  351 (390)
T 1elu_A          291 RQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS-A----------------PQAGLVSFTVDSPLGHRAIVQKLEE--  351 (390)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS-C----------------CSSSEEEEEECSSSCHHHHHHHHHH--
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc-c----------------ccccEEEEEcCCCCCHHHHHHHHHH--
Confidence            22336667778899999999999987 44554331 0                3567899998622224567777754  


Q ss_pred             cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                       .| +.+..|+                          .++.||||++ ...+++.++.+.++|.++
T Consensus       352 -~g-i~v~~~~--------------------------~~~~iRis~~-~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          352 -QR-IYLRTIA--------------------------DPDCIRACCH-YITDEEEINHLLARLADF  388 (390)
T ss_dssp             -TT-EECEEET--------------------------TTTEEEEECC-TTCCHHHHHHHHHHHTTC
T ss_pred             -CC-EEEEecC--------------------------CCCeEEEecc-cCCCHHHHHHHHHHHHhh
Confidence             23 4444431                          1478999998 777888888888887654

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.96  E-value=2.2e-26  Score=230.67  Aligned_cols=310  Identities=13%  Similarity=0.085  Sum_probs=216.2

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCc
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLY  151 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y  151 (450)
                      +++.+.+.....++. .+.......+...++++.||+++|.+..+++++   |++++..++..+.  .+||+|+++.++|
T Consensus        67 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~s---G~~a~~~~~~~l~~~~~gd~Vl~~~~~~  142 (401)
T 2bwn_A           67 AAMHEALEAVGAGSG-GTRNISGTTAYHRRLEAEIAGLHQKEAALVFSS---AYNANDATLSTLRVLFPGLIIYSDSLNH  142 (401)
T ss_dssp             HHHHHHHHHHCSCCC-SBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHHHHHSTTCEEEEETTCC
T ss_pred             HHHHHHHHHcCCCCC-CcCcccCChHHHHHHHHHHHHHhCCCcEEEECC---cHHHHHHHHHHHhcCCCCCEEEECchhh
Confidence            666666654323332 232222345678999999999999877666677   7778777776654  4899999999999


Q ss_pred             hhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC
Q 013079          152 GGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF  228 (450)
Q Consensus       152 ~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~  228 (450)
                      +++...+.     ..|.++.+++.+|++++++++..   +++++|++++++||||.+.|+++|.++|+++|+++|+|++|
T Consensus       143 ~~~~~~~~-----~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~  217 (401)
T 2bwn_A          143 ASMIEGIK-----RNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVH  217 (401)
T ss_dssp             HHHHHHHH-----HSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHHHHHH-----HcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccc
Confidence            99988774     36888999998899999998831   57999999999999999999999999999999999999999


Q ss_pred             CC--CCCC---c---cCC--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCC-chHHHHHHHHc
Q 013079          229 SP--LVLS---P---ARL--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPT-MNPKVAFELSE  297 (450)
Q Consensus       229 ~~--~~~~---~---~~~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~  297 (450)
                      +.  +...   .   ..+  ..|+++.|+||.++++|    ||+++++++++.+...........+.. ..+.++..++.
T Consensus       218 ~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~  293 (401)
T 2bwn_A          218 AVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIA  293 (401)
T ss_dssp             TTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHH
T ss_pred             cccccCCCCceeeeccCccccCcEEEeechhhccCCC----CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHH
Confidence            52  2111   0   111  35899999999999765    899889888887765433221122222 22222223333


Q ss_pred             cCCcH--HHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-c
Q 013079          298 RIPHL--GLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-N  374 (450)
Q Consensus       298 ~~~~l--~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~-~  374 (450)
                      .+...  ....+++.++++++.+.|++++..+..|                    .|++++|.++.......+.+.|. .
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~L~~~  353 (401)
T 2bwn_A          294 FLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDH--------------------GSHIVPVVIGDPVHTKAVSDMLLSD  353 (401)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCC--------------------SSSCEEEECCCHHHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccCC--------------------CCCeEEEEeCChHHHHHHHHHHHhc
Confidence            33333  5566777888999999998875544322                    23589999986444667777763 3


Q ss_pred             cccccccccccccccccccccccccCCCCCHHHHHhcCC--CCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGI--SAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~--~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                         .| +.+..+..                      .+.  ..+.||||++ ...+++.++.+.++|.++.
T Consensus       354 ---~g-i~v~~~~~----------------------~~~~~~~~~iRis~~-~~~t~~~i~~~~~~l~~~~  397 (401)
T 2bwn_A          354 ---YG-VYVQPINF----------------------PTVPRGTERLRFTPS-PVHDLKQIDGLVHAMDLLW  397 (401)
T ss_dssp             ---HC-EECCEECT----------------------TTSCTTCCEEEECCC-TTSCHHHHHHHHHHHHHHC
T ss_pred             ---CC-EEEeecCC----------------------CCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHH
Confidence               23 45443321                      011  1358999999 8778888888888887764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.96  E-value=2.1e-27  Score=240.89  Aligned_cols=288  Identities=17%  Similarity=0.166  Sum_probs=201.4

Q ss_pred             hHHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079          100 TVLNLSRQMAALEG----------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus       100 ~~~~l~~~iA~l~g----------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ...++++.||++++          .+.+++|+|   |++|+.+++.+++++||+|+++.|.|+++...+.   . ..|.+
T Consensus        87 g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~g---g~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~---~-~~g~~  159 (435)
T 3piu_A           87 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAG---ATSANETFIFCLADPGEAVLIPTPYYPGFDRDLK---W-RTGVE  159 (435)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTT---T-TTCCE
T ss_pred             CcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCC---hHHHHHHHHHHhcCCCCeEEECCCccccHHHHHH---H-hcCCE
Confidence            35788999998887          577999999   9999999999999999999999999998876542   1 25888


Q ss_pred             EEEeCCC-------CHHHHHHhhhc-----CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          170 TTFVDIS-------DHEMVNSAIVQ-----GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       170 v~~v~~~-------d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                      +..++.+       |+++|++++.+     .++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|+.+.+.
T Consensus       160 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~  239 (435)
T 3piu_A          160 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFS  239 (435)
T ss_dssp             EEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS
T ss_pred             EEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence            8887754       89999998832     28999999999999999976   578889999999999999999553221


Q ss_pred             c------c----C---------CCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHH
Q 013079          235 P------A----R---------LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFE  294 (450)
Q Consensus       235 ~------~----~---------~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~  294 (450)
                      .      .    +         .+.++++.|+||.+|++|.|+ ||+++ ++.+.+.+.....   ....+.+.+.++..
T Consensus       240 ~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  315 (435)
T 3piu_A          240 SPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSS---FGLVSSQTQHLLSA  315 (435)
T ss_dssp             SSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCE-EEEEESCHHHHHHHHHHGG---GSCCCHHHHHHHHH
T ss_pred             CCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeE-EEEEeCCHHHHHHHHHHhh---cCCCCHHHHHHHHH
Confidence            1      1    1         233488999999999999998 88887 5667776665443   12233344444433


Q ss_pred             HHccCC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH------HH
Q 013079          295 LSERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE------EK  364 (450)
Q Consensus       295 ~~~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~------~~  364 (450)
                      ++....    ++.+..+++.++++++.+.|+++++.+..+.                   .|.++++.++..      ..
T Consensus       316 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~g~~~~~~l~~~~~~~~~~~  376 (435)
T 3piu_A          316 MLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGN-------------------AGLFCWVDMRHLLRSNTFEA  376 (435)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCC-------------------SSSEEEEECGGGSSSSSHHH
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC-------------------eeEEEEEEcccccccCCchh
Confidence            433332    2334455678888899999988876554322                   456899998742      13


Q ss_pred             HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHH
Q 013079          365 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSR  441 (450)
Q Consensus       365 ~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~  441 (450)
                      ...+.+.|..  ++| +.+..|+.+..                     ..++.||||++ ..   ++++.++.|.+++++
T Consensus       377 ~~~~~~~l~~--~~g-i~v~~g~~~~~---------------------~~~~~iRi~~~-~~~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          377 EMELWKKIVY--EVH-LNISPGSSCHC---------------------TEPGWFRVCFA-NLPERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             HHHHHHHHHH--TSC-EECEEGGGGTC---------------------SSTTEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--HCC-EEEeCCcccCC---------------------CCCCEEEEEee-CCCHHHHHHHHHHHHHHHHH
Confidence            4566666643  234 56665544311                     12578999999 63   333344444444444


Q ss_pred             h
Q 013079          442 M  442 (450)
Q Consensus       442 ~  442 (450)
                      +
T Consensus       432 ~  432 (435)
T 3piu_A          432 Y  432 (435)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.96  E-value=1.2e-27  Score=235.16  Aligned_cols=286  Identities=14%  Similarity=0.074  Sum_probs=198.3

Q ss_pred             ChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           98 NPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      .+...++++.+|+++|.+  .+++|+|   |++|+++++.+++++||+|+++.++|+++. .. ..... .|.++.+++.
T Consensus        33 ~~~~~~l~~~la~~~g~~~~~i~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~  106 (352)
T 1iug_A           33 REVFLKARGLLREAFRTEGEVLILTGS---GTLAMEALVKNLFAPGERVLVPVYGKFSER-FY-EIALE-AGLVVERLDY  106 (352)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEESC---HHHHHHHHHHHHCCTTCEEEEEECSHHHHH-HH-HHHHH-TTCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCceEEEcCc---hHHHHHHHHHhccCCCCeEEEEeCCchhHH-HH-HHHHH-cCCceEEEeC
Confidence            345789999999999975  6899999   999999999999999999999999999976 22 22222 5888888876


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCC--CCCCCccCCCCeEEEeC
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPARLGADVVVHS  246 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~--~~~~~~~~~g~di~~~S  246 (450)
                      +     |++++++    +++++|++++++||||.+.|+++|.++|+++  |+++|+|++|+  ....+....++|+++.|
T Consensus       107 ~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s  182 (352)
T 1iug_A          107 PYGDTPRPEDVAK----EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASG  182 (352)
T ss_dssp             CTTCCCCTTTSCC----SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEE
T ss_pred             CCCCCCCHHHHhc----cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEec
Confidence            4     4554443    5789999999999999999999999999999  99999999983  23333334578999999


Q ss_pred             CCCc-cccCccceEEEEEcCHHHHHH---------HHHHhhh--hhhccCCC-chHH-HHHHHHcc-CCcHHHHHHHHHH
Q 013079          247 ISKF-ISGGADIIAGAVCGPANLVNS---------MMDLHQG--ALMLLGPT-MNPK-VAFELSER-IPHLGLRMKEHCH  311 (450)
Q Consensus       247 ~sK~-~g~~g~~igG~l~~~~~~~~~---------l~~~~~~--~~~~~g~~-~~~~-~a~~~~~~-~~~l~~~~~~~~~  311 (450)
                      +||+ +++.|  + |+++.++++++.         +......  .....+.. .... ++..++.. .+.+....+++.+
T Consensus       183 ~~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  259 (352)
T 1iug_A          183 SQKGLMCPPG--L-GFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAW  259 (352)
T ss_dssp             SSSTTCCCSC--E-EEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             CcccccCCCc--e-eEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9994 55445  5 888888877654         2211000  01122221 1112 22222222 1235666777889


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      +++++.+.|++++..+..|.                  ..+++++|.++.......+.+.|...   | +.++.|+.+  
T Consensus       260 ~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~~~~--  315 (352)
T 1iug_A          260 QNALLYGVGEEGGLRPVPKR------------------FSPAVAAFYLPEGVPYARVKEAFAQR---G-AVIAGGQGP--  315 (352)
T ss_dssp             HHHHHHHHHHHTTCEESCSS------------------BCTTCEEEECCTTCCHHHHHHHHHTT---T-EECEECCGG--
T ss_pred             HHHHHHHHHHHCCCcccccc------------------cCCeEEEEEcCCCCCHHHHHHHHHHC---C-EEEEeCCCc--
Confidence            99999999998765554331                  13568999987322256677777642   3 565555310  


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                           ..++.||||++ ..++++.++.+.++|.++
T Consensus       316 ---------------------~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~  344 (352)
T 1iug_A          316 ---------------------LKGKVFRLSLM-GAYDRYEALGVAGMFREV  344 (352)
T ss_dssp             ---------------------GTTTEEEECCC-SSCCHHHHHHHHHHHHHH
T ss_pred             ---------------------cCCCEEEEEcc-ccCCHHHHHHHHHHHHHH
Confidence                                 02478999999 766666677776666654

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.96  E-value=4.7e-27  Score=236.41  Aligned_cols=292  Identities=20%  Similarity=0.226  Sum_probs=205.3

Q ss_pred             hHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          100 TVLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       100 ~~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...++++.+|++++        .+.+++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     ..|.++.
T Consensus        80 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~  151 (409)
T 2gb3_A           80 GIWELREAFASYYKRRQRVDVKPENVLVTNG---GSEAILFSFAVIANPGDEILVLEPFYANYNAFAK-----IAGVKLI  151 (409)
T ss_dssp             CCHHHHHHHHHHHHHTSCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HHTCEEE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCHHHEEEeCC---HHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHH-----HcCCEEE
Confidence            35677888887764        267999999   9999999999999999999999999999888765     3577888


Q ss_pred             EeCCCC------HHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC-----Ccc-
Q 013079          172 FVDISD------HEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL-----SPA-  236 (450)
Q Consensus       172 ~v~~~d------~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~-----~~~-  236 (450)
                      +++.++      +++|++++ ++++++|++++|+||||.+.+   +++|.++|+++|+++|+|++|+.+.+     ... 
T Consensus       152 ~v~~~~~~~~~~~~~l~~~l-~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~  230 (409)
T 2gb3_A          152 PVTRRMEEGFAIPQNLESFI-NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALS  230 (409)
T ss_dssp             EEECCGGGTSCCCTTGGGGC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGG
T ss_pred             EeccCCCCCCccHHHHHHhh-CcCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccc
Confidence            877642      67888888 678999999999999999964   88999999999999999999954432     111 


Q ss_pred             C-CCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013079          237 R-LGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-PHLGLRMKEHCHRA  313 (450)
Q Consensus       237 ~-~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-~~l~~~~~~~~~~~  313 (450)
                      . .+.|+++.|+||.+|++|+|+ ||++.++ ++++.+.......  ..++.+.+.++..++... .++....+++.+++
T Consensus       231 ~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  307 (409)
T 2gb3_A          231 IESDKVVVIDSVSKKFSACGARV-GCLITRNEELISHAMKLAQGR--LAPPLLEQIGSVGLLNLDDSFFDFVRETYRERV  307 (409)
T ss_dssp             SCCTTEEEEEESTTTTTCGGGCC-EEEECSCHHHHHHHHHHHHHS--CCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEecchhccCCccceE-EEEEECcHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            2 267999999999999899998 9999887 8888887665422  123333343443444322 23445556678889


Q ss_pred             HHHHHHHHhCCCee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc---cccccccccccccc
Q 013079          314 LIFARRMKKLGLKV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY---AQFGFMAVSLGYYE  389 (450)
Q Consensus       314 ~~l~~~L~~~~~~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~---~~~g~i~vs~G~~~  389 (450)
                      +++.+.|++++..+ ..|.                   .|.++++.+++. ....+.+.|...   ...| +.+..|..+
T Consensus       308 ~~l~~~L~~~g~~~~~~~~-------------------~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~g-i~v~~g~~f  366 (409)
T 2gb3_A          308 ETVLKKLEEHGLKRFTKPS-------------------GAFYITAELPVE-DAEEFARWMLTDFNMDGET-TMVAPLRGF  366 (409)
T ss_dssp             HHHHHHHHHTTCCCBCCCS-------------------BSSEEEEECSSS-CHHHHHHHHHHSCCBTTEE-EECEEGGGG
T ss_pred             HHHHHHHHHcCceeeeCCC-------------------eeEEEEEEeCCC-CHHHHHHHHHhccccccCc-EEEeCchHh
Confidence            99999998876544 3221                   355778888622 245566666531   0013 555555332


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHhh
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~~  443 (450)
                      ...                  .+..++.||||++ .  ++.++.++.|.+++.+++
T Consensus       367 ~~~------------------~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~~~~  403 (409)
T 2gb3_A          367 YLT------------------PGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMFC  403 (409)
T ss_dssp             CSS------------------TTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC------------------CCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHhh
Confidence            110                  0122578999999 5  334555566666665553

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.96  E-value=4.2e-27  Score=234.85  Aligned_cols=293  Identities=13%  Similarity=0.043  Sum_probs=199.3

Q ss_pred             ChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           98 NPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      .+..+++++.+|+++|.+  .+++|+|   |++|+.+++.+++++||+|+++.++|+++. .. ..... .|.++.+++.
T Consensus        41 ~~~~~~l~~~la~~~g~~~~~v~~t~g---~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v~~  114 (392)
T 2z9v_A           41 QLLYEKVVDKAQKAMRLSNKPVILHGE---PVLGLEAAAASLISPDDVVLNLASGVYGKG-FG-YWAKR-YSPHLLEIEV  114 (392)
T ss_dssp             HHHHHHHHHHHHHHTTCSSCCEEESSC---THHHHHHHHHHHCCTTCCEEEEESSHHHHH-HH-HHHHH-HCSCEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCC---chHHHHHHHHHhcCCCCEEEEecCCcccHH-HH-HHHHH-cCCceEEeeC
Confidence            345789999999999974  6899999   999999999999999999999999999873 21 12122 5777777775


Q ss_pred             C-----CHHHHHHhhhc-CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCC
Q 013079          176 S-----DHEMVNSAIVQ-GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHSI  247 (450)
Q Consensus       176 ~-----d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~  247 (450)
                      +     |+++|++++++ +++++|++++++||||.+.|+++|.++|+++|+++|+|++|+  ....+...+++|+++.|+
T Consensus       115 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~  194 (392)
T 2z9v_A          115 PYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGP  194 (392)
T ss_dssp             CTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECS
T ss_pred             CCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecC
Confidence            3     89999999842 579999999999999999999999999999999999999983  233333445789999999


Q ss_pred             CCcc-ccCccceEEEEEcCHHHHHHHHHHhh-----------------hhhhccCCCchHH--HH-HHHHccC-Cc-HHH
Q 013079          248 SKFI-SGGADIIAGAVCGPANLVNSMMDLHQ-----------------GALMLLGPTMNPK--VA-FELSERI-PH-LGL  304 (450)
Q Consensus       248 sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~-----------------~~~~~~g~~~~~~--~a-~~~~~~~-~~-l~~  304 (450)
                      ||++ +++|  + |+++.++++++.+.....                 ......+ +.+..  .+ ..++... +. +..
T Consensus       195 sK~~~~~~g--~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~g~~~  270 (392)
T 2z9v_A          195 NKCLGAPPG--L-TMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPF-TPSVSEINGLDVALDLYLNEGPEA  270 (392)
T ss_dssp             SSTTCCCSC--C-EEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSS-CCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cccccCCCc--e-eEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCC-CCCHHHHHHHHHHHHHHHhccHHH
Confidence            9965 4556  4 899999888877753210                 0001122 22222  11 1222221 11 455


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013079          305 RMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS  384 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs  384 (450)
                      ..+++.++++++.+.|++++..+..|.    +.           ...+++++|.++.......+.+.|...  +| +.+.
T Consensus       271 ~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~--~g-i~v~  332 (392)
T 2z9v_A          271 VWARHALTAKAMRAGVTAMGLSVWAAS----DS-----------IASPTTTAVRTPDGVDEKALRQAARAR--YG-VVFS  332 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCBSSSS----GG-----------GBCTTEEEEECCTTCCHHHHHHHHHHH--HC-EECE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeeccCC----cc-----------ccCCceEEEECCCCCCHHHHHHHHHhc--CC-EEEe
Confidence            566778889999999988755543321    00           024568899986222245677666542  23 5555


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~  442 (450)
                      .|+.+                       ..++.||||+ + ...+++.++.+.++|.++
T Consensus       333 ~g~~~-----------------------~~~~~lRi~~~~-~~~~~~~i~~~~~~l~~~  367 (392)
T 2z9v_A          333 SGRGE-----------------------TLGKLTRIGHMG-PTAQPIYAIAALTALGGA  367 (392)
T ss_dssp             ECCGG-----------------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred             cCCCC-----------------------CCCCeEEEeCcc-cccCHHHHHHHHHHHHHH
Confidence            55321                       0157899995 5 344455555555555443

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.96  E-value=2.9e-27  Score=237.39  Aligned_cols=290  Identities=13%  Similarity=0.141  Sum_probs=203.8

Q ss_pred             hhHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh--HHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEGTEA---AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~---~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +..+++++.++++++.+.   +++|+|   |++|+++++.+++++||+|+++.++|++  +...+.     ..|.++.++
T Consensus        46 ~~~~~~~~~la~~~~~~~~~~v~~~~s---gt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-----~~g~~~~~v  117 (411)
T 3nnk_A           46 HYMNEVMALYRGVFRTENRWTMLVDGT---SRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIAR-----RCRAEVHTI  117 (411)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEEESC---HHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHH-----HTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCC---cHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHH-----HcCCeEEEE
Confidence            567899999999998643   688899   9999999999999999999999999987  554443     268888888


Q ss_pred             CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeC
Q 013079          174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHS  246 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S  246 (450)
                      +.+     |+++|++++...++++|++++|+||||.+.|+++|.++|+++|+++|+|+++  +....+....++|+++.|
T Consensus       118 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s  197 (411)
T 3nnk_A          118 EVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAG  197 (411)
T ss_dssp             ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred             ecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEec
Confidence            766     8999999993238999999999999999999999999999999999999998  333345555689999999


Q ss_pred             CCCc-cccCccceEEEEEcCHHHHHHHHHHhh---h-----------------------------hhhccCCCchHH--H
Q 013079          247 ISKF-ISGGADIIAGAVCGPANLVNSMMDLHQ---G-----------------------------ALMLLGPTMNPK--V  291 (450)
Q Consensus       247 ~sK~-~g~~g~~igG~l~~~~~~~~~l~~~~~---~-----------------------------~~~~~g~~~~~~--~  291 (450)
                      +||+ +++.|  + |+++.++++++.+.....   +                             .......+.+..  .
T Consensus       198 ~~K~l~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (411)
T 3nnk_A          198 MQKCLGGPSG--T-SPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALF  274 (411)
T ss_dssp             STTTTCCCSS--E-EEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHH
T ss_pred             CccccCCCCc--e-EEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHH
Confidence            9997 55544  5 999999998887765330   0                             000011122221  1


Q ss_pred             HH-HHHccC-C-cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013079          292 AF-ELSERI-P-HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL  368 (450)
Q Consensus       292 a~-~~~~~~-~-~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~  368 (450)
                      +. .++... + .+....+++.++++++.+.|++.+..+..|..                ...+.+++|.++.......+
T Consensus       275 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l  338 (411)
T 3nnk_A          275 GARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLK----------------HKMNNVLGVVIPQGINGDQA  338 (411)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG----------------GBCSSEEEEECCTTCCHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcc----------------cccccEEEEECCCCCCHHHH
Confidence            11 122211 1 14566677888999999999987665443320                12466899999632224566


Q ss_pred             HHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHHHh
Q 013079          369 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       369 ~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~~~  442 (450)
                      .+.|...  +| +.+..|..                       ...++.||||+ | ..++++.++.+.++|.++
T Consensus       339 ~~~l~~~--~g-i~v~~g~~-----------------------~~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~  386 (411)
T 3nnk_A          339 RKLMLED--FG-IEIGTSFG-----------------------PLHGKVWRIGTMG-YNARKDCVMTTLSALEAV  386 (411)
T ss_dssp             HHHHHHH--HS-EEEEECCG-----------------------GGTTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--cC-eEEeCccC-----------------------CCCCCEEEEeCcc-CcCCHHHHHHHHHHHHHH
Confidence            6665431  23 45554411                       11257899998 7 655555566665555554

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.96  E-value=9.8e-27  Score=240.08  Aligned_cols=322  Identities=16%  Similarity=0.122  Sum_probs=205.9

Q ss_pred             cccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC-----CCeEEEecChHHHHHHHHHHHHHhccCCC
Q 013079           68 FTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG-----TEAAYCTASDKAGMSAISSVLMQLCSSGG  142 (450)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g-----~~~~~~tsg~~~gt~ai~~al~~l~~~gd  142 (450)
                      ++...++++.+.+....+.....|.......+.++.+.+.+++..|     .+.+++|+|   +++|+.+++..++.+||
T Consensus       102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G---~~~ai~~~~~~l~~~gd  178 (498)
T 3ihj_A          102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTG---ASDGISTILKILVSGGG  178 (498)
T ss_dssp             SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESS---HHHHHHHHHHHHCCCCG
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCC---HHHHHHHHHHHHcCCCC
Confidence            3333345566666543211112233332223344455555554443     467999999   99999999999998875


Q ss_pred             ----EEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhcC-----CceEEEEecCCCCccccc
Q 013079          143 ----HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQG-----RTKVLYFESISNPTLAVA  206 (450)
Q Consensus       143 ----~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~~-----~t~lv~i~~~~NptG~v~  206 (450)
                          +|+++.|.|+.+...+.     ..|.++..++.+       |+++|++++ ++     ++++|++++|+||||.+.
T Consensus       179 ~~~d~Vlv~~p~y~~~~~~~~-----~~g~~~v~~~~~~~~~~~~d~~~le~~l-~~~~~~~~~k~i~l~np~NPTG~v~  252 (498)
T 3ihj_A          179 KSRTGVMIPIPQYPLYSAVIS-----ELDAIQVNYYLDEENCWALNVNELRRAV-QEAKDHCDPKVLCIINPGNPTGQVQ  252 (498)
T ss_dssp             GGSEEEEEEESCCTHHHHHHH-----HTTCEEEEEECBGGGTTBCCHHHHHHHH-HHHTTTSEEEEEEEESSCTTTCCCC
T ss_pred             CCCCEEEEeCCCchhHHHHHH-----HcCCEEEEeeccccccCCCCHHHHHHHH-HhhhccCCCeEEEEECCCCCCCCcC
Confidence                99999999999988875     357777777654       899999998 44     589999999999999996


Q ss_pred             C---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc----CC--------------CCeEEEeCCCCcc-ccCccceEEEEE-
Q 013079          207 N---IPELSRLAHDKGVTVVVDNTFSPLVLSPA----RL--------------GADVVVHSISKFI-SGGADIIAGAVC-  263 (450)
Q Consensus       207 ~---l~~I~~la~~~gi~livD~~~~~~~~~~~----~~--------------g~di~~~S~sK~~-g~~g~~igG~l~-  263 (450)
                      +   +++|+++|+++|+++|+|++|..+.+...    .+              ...++++|+||.+ |.+|.|+ ||++ 
T Consensus       253 s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~-G~~~~  331 (498)
T 3ihj_A          253 SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRG-GYMEV  331 (498)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCC-EEEEE
T ss_pred             CHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccce-EEEEE
Confidence            6   67799999999999999999966544311    11              1247889999999 7799997 9987 


Q ss_pred             --cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-----------CCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeC
Q 013079          264 --GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-----------IPHLGLRMKEHCHRALIFARRMKKLG-LKVLY  329 (450)
Q Consensus       264 --~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-----------~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~  329 (450)
                        .++++++.+......  ....+.+.+.++..++..           .++.....+++.++++.+.+.|++++ +.+..
T Consensus       332 ~~~~~~l~~~l~~~~~~--~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~  409 (498)
T 3ihj_A          332 INLHPEIKGQLVKLLSV--RLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNP  409 (498)
T ss_dssp             ESCCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC
T ss_pred             ecCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecC
Confidence              688888888766441  122333444433333322           01123344567888999999998873 34433


Q ss_pred             CCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHH-----------HHH--HHHHhhccccccccccccccccccccccc
Q 013079          330 PGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEK-----------ANR--LMNYLQNYAQFGFMAVSLGYYETLMSCSG  396 (450)
Q Consensus       330 p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~-----------~~~--~~~~l~~~~~~g~i~vs~G~~~s~~~~~~  396 (450)
                      |.                   .|.++++.+.....           ...  +...|..   .| +.+..|+.+...    
T Consensus       410 p~-------------------gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~---~g-I~v~pG~~f~~~----  462 (498)
T 3ihj_A          410 LQ-------------------GAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEE---TG-ICVVPGSGFGQR----  462 (498)
T ss_dssp             CC-------------------BSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHH---HC-BCCEEGGGTCCC----
T ss_pred             CC-------------------eEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHH---CC-EEEEeCcccCCC----
Confidence            22                   34456655541110           112  2233333   23 666666553210    


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHhhhc
Q 013079          397 SSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~~~~  445 (450)
                                      ...+.+|||++ .  ++.++.++.|.+++.++.++
T Consensus       463 ----------------~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~~~~~  496 (498)
T 3ihj_A          463 ----------------EGTYHFRMTIL-PPVEKLKTVLQKVKDFHINFLEK  496 (498)
T ss_dssp             ----------------TTCCBEEEECC-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence                            11468999998 5  34556677777777766543

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.96  E-value=4.6e-27  Score=234.88  Aligned_cols=293  Identities=14%  Similarity=0.119  Sum_probs=200.2

Q ss_pred             ChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHH--HHHHhCCCccCeeEEE
Q 013079           98 NPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHA--LLTHFFPRACNITTTF  172 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~--~~~~~~~~~~g~~v~~  172 (450)
                      ....+++++.+|+++|.+   .+++|+|   |++|+.+++.+++++||+|+++.|+|+++..  .+.     ..|.++.+
T Consensus        50 ~~~~~~l~~~la~~~~~~~~~~v~~~~g---~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-----~~g~~~~~  121 (396)
T 2ch1_A           50 FRTMDEVKDGLRYIFQTENRATMCVSGS---AHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSE-----RYGADVRT  121 (396)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTTCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEECCc---HHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHH-----HcCCceEE
Confidence            345889999999999974   5889999   9999999999999999999999999999742  222     26888888


Q ss_pred             eCC-----CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEE
Q 013079          173 VDI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV  244 (450)
Q Consensus       173 v~~-----~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~  244 (450)
                      ++.     .|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|.  ....+...+++|+++
T Consensus       122 v~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~  200 (396)
T 2ch1_A          122 IEGPPDRPFSLETLARAI-ELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVY  200 (396)
T ss_dssp             EECCTTSCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEE
T ss_pred             ecCCCCCCCCHHHHHHHH-HhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEE
Confidence            874     3899999999 65 79999999999999999999999999999999999999984  222333445789999


Q ss_pred             eCCCCccccCccceEEEEEcCHHHHHHHHHHh--------------hhh------hhccCCC--chHHHHHHHHccC--C
Q 013079          245 HSISKFISGGADIIAGAVCGPANLVNSMMDLH--------------QGA------LMLLGPT--MNPKVAFELSERI--P  300 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--------------~~~------~~~~g~~--~~~~~a~~~~~~~--~  300 (450)
                      .|+||+++++. .+ |+++.++++++.+....              ...      ....++.  ..+.++..++...  +
T Consensus       201 ~s~~K~~~~~~-g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~  278 (396)
T 2ch1_A          201 TGAQKVLGAPP-GI-TPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEE  278 (396)
T ss_dssp             CCCC-CCCCCS-SC-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EcCCccccCCC-Ce-EEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence            99999766432 25 88888888777664210              000      0011111  1222222233222  3


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013079          301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF  380 (450)
Q Consensus       301 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~  380 (450)
                      .+....+++.++++++.+.|++++.++..|.-               .+..+.+++|.++.......+.+.|...  +| 
T Consensus       279 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~g-  340 (396)
T 2ch1_A          279 GLENQIKRRIECAQILYEGLGKMGLDIFVKDP---------------RHRLPTVTGIMIPKGVDWWKVSQYAMNN--FS-  340 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSG---------------GGBCTTEEEEECCTTCCHHHHHHHHHHH--HC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHCCCeeccCCc---------------cccCCceEEEEcCCCCCHHHHHHHHHHh--CC-
Confidence            35566777888999999999887655443320               0123558999986222245676666431  23 


Q ss_pred             cccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCC----CHHHHHHHHHHHHHHhh
Q 013079          381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLG----TLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       381 i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~----~~~~~i~~l~~al~~~~  443 (450)
                      +.+..|..+                       ..++.||||+ + ..    +.+++++.|.++++++.
T Consensus       341 i~v~~g~~~-----------------------~~~~~iRi~~~~-~~~~~e~i~~~~~~l~~~l~~~~  384 (396)
T 2ch1_A          341 LEVQGGLGP-----------------------TFGKAWRVGIMG-ECSTVQKIQFYLYGFKESLKATH  384 (396)
T ss_dssp             BCCBCCCGG-----------------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEecCccc-----------------------cCCCEEEEECCC-CcCCHHHHHHHHHHHHHHHHHhC
Confidence            555544321                       0257899999 6 43    34455555555555554

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.95  E-value=2.4e-27  Score=240.11  Aligned_cols=281  Identities=11%  Similarity=0.084  Sum_probs=201.3

Q ss_pred             hHHHHHHHHHHHh-----CC--Ce---EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCc-cCe
Q 013079          100 TVLNLSRQMAALE-----GT--EA---AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRA-CNI  168 (450)
Q Consensus       100 ~~~~l~~~iA~l~-----g~--~~---~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-~g~  168 (450)
                      ...++++.||+++     +.  +.   +++|+|   |++|+++++.+++++||+|+++.|+|+++...+.     . .|.
T Consensus        89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g---~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~-----~~~g~  160 (430)
T 2x5f_A           89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNA---LTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFN-----TRNGA  160 (430)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESH---HHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHT-----TTTCC
T ss_pred             CCHHHHHHHHHHHhccCcccCCCccceEEEcCC---chHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHH-----HhcCC
Confidence            3678999999988     54  67   899999   9999999999999999999999999999987764     3 577


Q ss_pred             eEEEeCCC------CHHHHHHhhhcC---CceEEEEecCCCCcccccC---HHHHHHHHHh-----cCCEEEEeCCCCCC
Q 013079          169 TTTFVDIS------DHEMVNSAIVQG---RTKVLYFESISNPTLAVAN---IPELSRLAHD-----KGVTVVVDNTFSPL  231 (450)
Q Consensus       169 ~v~~v~~~------d~~~l~~ai~~~---~t~lv~i~~~~NptG~v~~---l~~I~~la~~-----~gi~livD~~~~~~  231 (450)
                      ++..++.+      |+++|++++ ++   ++++|++++|+||||.+.+   +++|+++|++     +|+++|+|++|+.+
T Consensus       161 ~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~  239 (430)
T 2x5f_A          161 NLQTYPIFDKDGHYTTDSLVEAL-QSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGL  239 (430)
T ss_dssp             EEEEECCBCTTSCBCSHHHHHHH-HHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTC
T ss_pred             eEEEEeccCccCCcCHHHHHHHH-HhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccc
Confidence            88777642      689999988 54   7899999999999999988   8899999999     99999999999654


Q ss_pred             CCC-----c-c-C----CCC---eEEEeCCCCccccCccceEEEEEc---CHHHHHHHHHHhhhh---hhccCCCchHHH
Q 013079          232 VLS-----P-A-R----LGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGA---LMLLGPTMNPKV  291 (450)
Q Consensus       232 ~~~-----~-~-~----~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~---~~~~g~~~~~~~  291 (450)
                      .+.     + . .    .+.   ++++.|+||.+|++|+|+ ||++.   ++++++.+.......   .....+.+.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a  318 (430)
T 2x5f_A          240 FYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRV-GFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSA  318 (430)
T ss_dssp             BCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCC-EEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred             cCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCe-EEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHH
Confidence            321     1 1 1    246   789999999999899998 99988   888888887654420   112233344444


Q ss_pred             HHHHHc-cCCcHHH---HHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013079          292 AFELSE-RIPHLGL---RMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE  363 (450)
Q Consensus       292 a~~~~~-~~~~l~~---~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~  363 (450)
                      +..++. ...+...   ..+++.++++.+.+.|+    +.+..+..|                   ..|.++++.+++. 
T Consensus       319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~-------------------~~g~~~~~~~~~~-  378 (430)
T 2x5f_A          319 VKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDF-------------------NSGYFMAIKVHDV-  378 (430)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCC-------------------CBSSEEEEEESSS-
T ss_pred             HHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCC-------------------CceEEEEeCCCCC-
Confidence            444443 2222333   55667888899999998    444443322                   1345789999722 


Q ss_pred             HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHH
Q 013079          364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALS  440 (450)
Q Consensus       364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~  440 (450)
                      +...+.+.|..  ..| +.+..|                           .++.||||++ .   +++++.++.|.++++
T Consensus       379 ~~~~~~~~l~~--~~g-i~v~~g---------------------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~  427 (430)
T 2x5f_A          379 DPEALRKHLID--KYS-IGVIAL---------------------------NATDIRIAFS-CVEKDDIPHVFDSIAKAID  427 (430)
T ss_dssp             CHHHHHHHHHH--HHC-EECEEC---------------------------SSSEEEEEGG-GSCGGGHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH--hCC-EEEecC---------------------------CCCeEEEEEe-cCCHHHHHHHHHHHHHHHH
Confidence            24556666653  022 444433                           1478999999 4   345555566665555


Q ss_pred             H
Q 013079          441 R  441 (450)
Q Consensus       441 ~  441 (450)
                      +
T Consensus       428 ~  428 (430)
T 2x5f_A          428 D  428 (430)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.95  E-value=7.9e-27  Score=234.62  Aligned_cols=292  Identities=13%  Similarity=0.127  Sum_probs=202.3

Q ss_pred             ChhHHHHHHHHHHHhCCCe--E-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchh--HHHHHHHhCCCccCeeEEE
Q 013079           98 NPTVLNLSRQMAALEGTEA--A-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGG--THALLTHFFPRACNITTTF  172 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~--~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~--~~~~~~~~~~~~~g~~v~~  172 (450)
                      .+..+++++.+++++|.+.  + ++|+|   |++|+.+++.+++++||+|+++.++|++  +...+.     ..|.++.+
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s---~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-----~~g~~~~~  114 (416)
T 3isl_A           43 TGIMNETMEMLRELFQTKNRWAYPIDGT---SRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAE-----RYGANVHM  114 (416)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSEEEEEESC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTTCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEecCc---HHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHH-----hcCCeeEE
Confidence            5668999999999999753  4 48899   9999999999999999999999999998  433333     26888888


Q ss_pred             eCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEe
Q 013079          173 VDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVH  245 (450)
Q Consensus       173 v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~  245 (450)
                      ++.+     |+++|++++.++++++|++++++||||.+.|+++|.++|+++|+++|+|++|  +....+....++|+++.
T Consensus       115 v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~  194 (416)
T 3isl_A          115 LECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIG  194 (416)
T ss_dssp             EECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEEC
T ss_pred             EecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEe
Confidence            8876     8999999993268999999999999999999999999999999999999998  33444555668999999


Q ss_pred             CCCCc-cccCccceEEEEEcCHHHHHHHHHHh--------------------------------h--hhhhccCCCchHH
Q 013079          246 SISKF-ISGGADIIAGAVCGPANLVNSMMDLH--------------------------------Q--GALMLLGPTMNPK  290 (450)
Q Consensus       246 S~sK~-~g~~g~~igG~l~~~~~~~~~l~~~~--------------------------------~--~~~~~~g~~~~~~  290 (450)
                      |+||+ +++.|  + |+++.++++++.+....                                .  ........+.+..
T Consensus       195 s~~K~l~g~~g--~-g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (416)
T 3isl_A          195 GTQKCLSVPSG--M-APITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATT  271 (416)
T ss_dssp             CSSSTTCCCSS--E-EEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHH
T ss_pred             cCccccCCCCC--e-EEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHH
Confidence            99997 55555  5 99999998887775321                                0  0000111122221


Q ss_pred             --HH-HHHHccC-Cc-HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013079          291 --VA-FELSERI-PH-LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA  365 (450)
Q Consensus       291 --~a-~~~~~~~-~~-l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~  365 (450)
                        .+ ..++... +. +....+++.++++++.+.|++.+.++..|..                ...+.+++|.++.....
T Consensus       272 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~  335 (416)
T 3isl_A          272 MLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDS----------------CKMPVVTCVEIPGGIDG  335 (416)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGG----------------GBCTTEEEEECCTTCCH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCcc----------------ccCCcEEEEeCCCCCCH
Confidence              11 1222211 12 5566677888999999999987655543320                02466899999632235


Q ss_pred             HHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC----HHHHHHHHHHHHHH
Q 013079          366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQRWSQFEKALSR  441 (450)
Q Consensus       366 ~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~----~~~~i~~l~~al~~  441 (450)
                      ..+.+.|...  +| +.++.|..                       ...++.||||++...+    +++.++.|.+++.+
T Consensus       336 ~~l~~~L~~~--~g-i~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~  389 (416)
T 3isl_A          336 ESVRDMLLAQ--FG-IEIASSFG-----------------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR  389 (416)
T ss_dssp             HHHHHHHHHH--HC-EECBCCCS-----------------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CC-EEEecCCC-----------------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence            6677776531  23 56565521                       1225789999941333    34444445554444


Q ss_pred             h
Q 013079          442 M  442 (450)
Q Consensus       442 ~  442 (450)
                      +
T Consensus       390 ~  390 (416)
T 3isl_A          390 H  390 (416)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.95  E-value=6.7e-27  Score=235.45  Aligned_cols=298  Identities=16%  Similarity=0.119  Sum_probs=198.5

Q ss_pred             ChhHHHHHHHHHHHh------C--CCeEEEecChHHHHHHHHHHHHHhccCCC-----EEEEe-CCCchhHHHHHHHhCC
Q 013079           98 NPTVLNLSRQMAALE------G--TEAAYCTASDKAGMSAISSVLMQLCSSGG-----HVVAA-RTLYGGTHALLTHFFP  163 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~------g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd-----~Vi~~-~~~y~~~~~~~~~~~~  163 (450)
                      .....++|+.||+++      +  .+++++|+|   |++|+++++++++++||     +|+++ .|+|+++...+.....
T Consensus        74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G---~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~  150 (417)
T 3g7q_A           74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNG---SQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDL  150 (417)
T ss_dssp             TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESC---HHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CC
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCC---cHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhh
Confidence            445678888888886      2  467999999   99999999999999987     89997 9999998765421110


Q ss_pred             -CccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCC--
Q 013079          164 -RACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPL--  231 (450)
Q Consensus       164 -~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~--  231 (450)
                       ...+..+..++.+      |+++|+  + ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|+.+  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~d~~~l~--~-~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~  227 (417)
T 3g7q_A          151 FVSARPNIELLPEGQFKYHVDFEHLH--I-GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFP  227 (417)
T ss_dssp             EEECCCEEEEEGGGEEEEECCGGGCC--C-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred             hccccCcccccCCcccccccCHHHhc--c-ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccc
Confidence             0124455555432      777776  5 778999999999999999988   889999999999999999999532  


Q ss_pred             --CC---CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHH---
Q 013079          232 --VL---SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG---  303 (450)
Q Consensus       232 --~~---~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~---  303 (450)
                        .+   .+...+.++++.|+|| ++++|+|+ ||++.++++++.+....... ...++.+.+.++...+.......   
T Consensus       228 ~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~  304 (417)
T 3g7q_A          228 GIIFSEARPLWNPNIILCMSLSK-LGLPGSRC-GIIIANDKTITAIANMNGII-SLAPGGMGPAMMCEMIKRNDLLRLSE  304 (417)
T ss_dssp             CCBCSCCCCCCCTTEEEEEESGG-GTCTTSCC-EEEECCHHHHHHHHHHHHHH-CCCCCSHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccccccccCCCCCEEEEEechh-ccCCCcce-EEEEeCHHHHHHHHHhhcce-eeCCCcHHHHHHHHHHcCcchHHHHH
Confidence              11   1222468899999999 58899998 99999999999887765522 23344555555554444433222   


Q ss_pred             H-HHHHHHHHHHHHHHHHHh-CC---CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccc
Q 013079          304 L-RMKEHCHRALIFARRMKK-LG---LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQ  377 (450)
Q Consensus       304 ~-~~~~~~~~~~~l~~~L~~-~~---~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~  377 (450)
                      . ..+++.++++.+.+.|++ ++   ..+..|.                   .|.++++.++. ......+...|..   
T Consensus       305 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-------------------~g~~~~~~~~~~~~~~~~l~~~l~~---  362 (417)
T 3g7q_A          305 TVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPE-------------------GAIFLWLWFKDLPITTELLYQRLKA---  362 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCC-------------------BSSEEEEECTTCSSCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCceeeCCC-------------------cceEEEEEcCCCCCCHHHHHHHHHH---
Confidence            2 234467777888888876 32   3444332                   56789999874 2235667777754   


Q ss_pred             ccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHHHHHHHHh
Q 013079          378 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       378 ~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l~~al~~~  442 (450)
                      .| +.+..|+.|.......              .+..++.||||++ .  +++++.++.|.+++.++
T Consensus       363 ~g-i~v~~g~~f~~~~~~~--------------~~~~~~~iRis~~-~~~~~i~~~~~~l~~~l~~~  413 (417)
T 3g7q_A          363 RG-VLMVPGHYFFPGLDKP--------------WPHTHQCMRMNYV-PEPDKIEAGVKILAEEIERA  413 (417)
T ss_dssp             TT-EECEEGGGGCTTBSSC--------------CGGGGGEEEEESC-SCHHHHHHHHHHHHHHHHHH
T ss_pred             CC-EEEECchhhCCCCccc--------------cccCCCeEEEEec-CCHHHHHHHHHHHHHHHHHH
Confidence            33 6777776553211000              0001468999999 6  12333445555555544

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.95  E-value=9.1e-27  Score=228.69  Aligned_cols=281  Identities=19%  Similarity=0.177  Sum_probs=192.4

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHH---HHHHhCCCccCeeEEEe
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHA---LLTHFFPRACNITTTFV  173 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~---~~~~~~~~~~g~~v~~v  173 (450)
                      ..+...+++++||+++|.+.+++|+|   |++|+.+++.+++++||+|++++|+|.++..   .+.     ..|.++.++
T Consensus        36 ~~~~~~~l~~~la~~~g~~~~~~~~~---gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~-----~~g~~~~~v  107 (347)
T 1jg8_A           36 EDPTINELERLAAETFGKEAALFVPS---GTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAV-----LSGVMPHPV  107 (347)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHH-----HTCCEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecC---cHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhh-----ccCeEEEEe
Confidence            46788999999999999999999999   9999999999989999999999999987543   222     257777776


Q ss_pred             CCC-----CHHHHHHhhhcC------CceEEEEecCCCCc-ccccC---HHHHHHHHHhcCCEEEEeCCCC--CC---CC
Q 013079          174 DIS-----DHEMVNSAIVQG------RTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFS--PL---VL  233 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~------~t~lv~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~--~~---~~  233 (450)
                       .+     |+++|++++ ++      +|++|++++|+||| |.+.|   +++|+++|+++|+++|+|++|.  .+   ..
T Consensus       108 -~~~~~~~d~~~l~~~i-~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~  185 (347)
T 1jg8_A          108 -PGKNGAMDPDDVRKAI-RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV  185 (347)
T ss_dssp             -CEETTEECHHHHHHHS-CCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC
T ss_pred             -cCCCCccCHHHHHHHh-ccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC
Confidence             32     899999999 53      69999999999999 99876   5688999999999999999862  11   12


Q ss_pred             CccC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079          234 SPAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       234 ~~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                      ++..  .+.|.++.|+||+++++   +|++++.++++++.+...+...  ..+.......+......++....++++..+
T Consensus       186 ~~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (347)
T 1jg8_A          186 PVKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKML--GGGMRQAGVLAAAGIIALTKMVDRLKEDHE  260 (347)
T ss_dssp             CHHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHH--TCCCSSTHHHHHHHHHHHHHSSTTHHHHHH
T ss_pred             ChHHhcccccEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222  25788888999999865   5557788888888776655421  111111222221111111111112333445


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      +++.+.+.|++++..+..+.                  ..++++++.++. ......|.+.|...   | +.++.+    
T Consensus       261 ~~~~l~~~L~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~~----  314 (347)
T 1jg8_A          261 NARFLALKLKEIGYSVNPED------------------VKTNMVILRTDNLKVNAHGFIEALRNS---G-VLANAV----  314 (347)
T ss_dssp             HHHHHHHHHHHHTCBCCGGG------------------CCSSEEEEECTTSSSCHHHHHHHHHHH---T-EECEEE----
T ss_pred             HHHHHHHHHHhcCceeccCC------------------CcceEEEEEcccccCCHHHHHHHHHHC---C-CEEecC----
Confidence            67788888887654432111                  235689999873 22256677777542   3 444321    


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                           +  ++.||||++ ...+++.++.+.++|.++
T Consensus       315 ---------------------~--~~~iRl~~~-~~~~~e~i~~~~~~l~~~  342 (347)
T 1jg8_A          315 ---------------------S--DTEIRLVTH-KDVSRNDIEEALNIFEKL  342 (347)
T ss_dssp             ---------------------E--TTEEEEECC-TTSCHHHHHHHHHHHHHH
T ss_pred             ---------------------C--CCeEEEEeC-CCCCHHHHHHHHHHHHHH
Confidence                                 0  367999998 766677777777776654

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.95  E-value=3.2e-27  Score=240.47  Aligned_cols=308  Identities=14%  Similarity=0.136  Sum_probs=205.1

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh----C--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEe
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA  147 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~----g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~  147 (450)
                      +++.+.+... +++...+.|+.  .+...++++.||+++    +  .+.+++|+|   +++++.++ ..++++||+|+++
T Consensus        89 ~a~~~~~~~~-~~~~~~~~y~~--~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G---~~~al~~~-~~l~~~gd~Vl~~  161 (449)
T 3qgu_A           89 DAMAKAAAGL-ATREGYSGYGA--EQGQGALREAVASTFYGHAGRAADEIFISDG---SKCDIARI-QMMFGSKPTVAVQ  161 (449)
T ss_dssp             HHHHHHHHGG-GGSCCCCCSTT--TTCCHHHHHHHHHHHHTTTTCCGGGEEEESC---HHHHHHHH-HHHHCSSSCEEEE
T ss_pred             HHHHHHHHhh-ccccCCCCCCC--CCCcHHHHHHHHHHHHcCCCCCHHHEEEccC---HHHHHHHH-HHHhCCCCEEEEc
Confidence            5566555432 22223344542  244678999999997    3  467999999   99999998 7888999999999


Q ss_pred             CCCchhHHHHHHHhCCCccCee----------EEEeCCCCHHHHHHhhhc-CCceEEEEecCCCCcccccC---HHHHHH
Q 013079          148 RTLYGGTHALLTHFFPRACNIT----------TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSR  213 (450)
Q Consensus       148 ~~~y~~~~~~~~~~~~~~~g~~----------v~~v~~~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~---l~~I~~  213 (450)
                      .|.|+++...+..     .|.+          +..++.++.+.+...+.. +++++|++++|+||||.+.+   +++|++
T Consensus       162 ~p~~~~~~~~~~~-----~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~  236 (449)
T 3qgu_A          162 DPSYPVYVDTSVM-----MGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVN  236 (449)
T ss_dssp             ESCCTHHHHHHHH-----HTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred             CCCChhHHHHHHH-----cCCcccccccccceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHH
Confidence            9999999887752     4545          667666532222222212 57999999999999999976   778889


Q ss_pred             HHHhcCCEEEEeCCCCCCCCC------ccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHH--------HHHHH
Q 013079          214 LAHDKGVTVVVDNTFSPLVLS------PAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVN--------SMMDL  275 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~~------~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~--------~l~~~  275 (450)
                      +|+++|+++|+|++|+.+...      ...    .+.++++.|+||.+|++|+|+ ||+++++++++        .+...
T Consensus       237 l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~  315 (449)
T 3qgu_A          237 FARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRL-GWTVVPKALKYANGEPVHADWNRV  315 (449)
T ss_dssp             HHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCC-EEEECCTTCBCTTSCBHHHHHHHH
T ss_pred             HHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCcccee-EEEecCHHHHhhhhhhHHHHHHHH
Confidence            999999999999999554332      111    256899999999999999998 99998877654        33333


Q ss_pred             hhhhhhccCCCchHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      .. .....++.+.+.++..++..  .+++.+..+++.++++++.+.|+++++.+..|.                   .|.
T Consensus       316 ~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~  375 (449)
T 3qgu_A          316 MT-TCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGD-------------------DAP  375 (449)
T ss_dssp             HH-HSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEESS-------------------SSS
T ss_pred             hh-cccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------------Cee
Confidence            22 11112333333333333322  234556667788999999999999877655432                   466


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      ++++.+++. ....+...|..  +.| +.+..|+.+..                     ..++.||||+. .  +++.++
T Consensus       376 ~~~~~~~~~-~~~~~~~~l~~--~~g-I~v~pg~~f~~---------------------~~~~~iRis~~-~--~~e~i~  427 (449)
T 3qgu_A          376 YIWVGFPGK-PSWDVFAEILE--RCN-IVTTPGSGYGP---------------------AGEGFVRASAF-G--SRENIL  427 (449)
T ss_dssp             EEEEECTTS-CHHHHHHHHHH--HHC-EECEEGGGGCG---------------------GGTTEEEEECC-S--CHHHHH
T ss_pred             EEEEECCCC-CHHHHHHHHHH--HCC-EEEecchHhCC---------------------CCCCeEEEEec-C--CHHHHH
Confidence            899998722 24455555443  123 56666644321                     01578999987 4  344455


Q ss_pred             HHHHHHHHh
Q 013079          434 QFEKALSRM  442 (450)
Q Consensus       434 ~l~~al~~~  442 (450)
                      .+.++|.++
T Consensus       428 ~~l~~l~~~  436 (449)
T 3qgu_A          428 EAVRRFKEA  436 (449)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.95  E-value=3.1e-26  Score=236.58  Aligned_cols=289  Identities=13%  Similarity=0.080  Sum_probs=200.5

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhc-cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLC-SSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ...+++.+|+++    |    .+.+++|+|   +++|+.+++..++ .+||+|+++.|.|+++...+.     ..|.++.
T Consensus       136 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G---~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~~~  207 (500)
T 3tcm_A          136 IHGLRDAIASGIASRDGFPANADDIFLTDG---ASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIA-----LHGGALV  207 (500)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCCGGGEEEESS---SHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHH-----HTTCEEE
T ss_pred             hHHHHHHHHHHHHhhcCCCCCcccEEEcCC---HHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHH-----HcCCEEE
Confidence            445666666654    2    467999999   9999999999998 799999999999999988875     3577777


Q ss_pred             EeCC-------CCHHHHHHhhhcC------CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079          172 FVDI-------SDHEMVNSAIVQG------RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       172 ~v~~-------~d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~  235 (450)
                      .++.       .|+++|++++ ++      ++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+..
T Consensus       208 ~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~  286 (500)
T 3tcm_A          208 PYYLNESTGWGLETSDVKKQL-EDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVD  286 (500)
T ss_dssp             EEECBTTTTSBCCHHHHHHHH-HHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCT
T ss_pred             EEecccccCCCCCHHHHHHHH-HHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCC
Confidence            7663       3899999998 43      7899999999999999976   6677778999999999999996544321


Q ss_pred             ----c-------CC------CCeEEEeCCCCcc-ccCccceEEEEEc---CHHHHHHHHHHhhhhhhccCCCchHHHHHH
Q 013079          236 ----A-------RL------GADVVVHSISKFI-SGGADIIAGAVCG---PANLVNSMMDLHQGALMLLGPTMNPKVAFE  294 (450)
Q Consensus       236 ----~-------~~------g~di~~~S~sK~~-g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~  294 (450)
                          .       .+      ...++++|+||.+ |++|.|+ ||++.   ++++++.+...+.  .....+.+.+.++..
T Consensus       287 ~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~  363 (500)
T 3tcm_A          287 NKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG-GYFEITGFSAPVREQIYKIAS--VNLCSNITGQILASL  363 (500)
T ss_dssp             TCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC-EEEEEESCCTTHHHHHHHHHH--TTCCCCHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce-EEEEEeCCCHHHHHHHHHHHh--cccCCCHHHHHHHHH
Confidence                0       11      1247889999999 8899998 99876   8888888876554  112333344444444


Q ss_pred             HHccC-----------CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079          295 LSERI-----------PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE  362 (450)
Q Consensus       295 ~~~~~-----------~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~  362 (450)
                      ++...           +++....+++.++++.+.+.|+++ ++.+..|.                   .|.++++.+.-.
T Consensus       364 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~-------------------g~~~~~~~~~lp  424 (500)
T 3tcm_A          364 VMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAE-------------------GAMYVFPQICLP  424 (500)
T ss_dssp             HHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC-------------------BTTEECCEECCC
T ss_pred             HhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCC-------------------eEEEEeeeecCc
Confidence            44421           223445566788899999999887 33443332                   344556444311


Q ss_pred             HH------------HHHH-HHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CC
Q 013079          363 EK------------ANRL-MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GT  427 (450)
Q Consensus       363 ~~------------~~~~-~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~  427 (450)
                      ..            ...+ ...|..   .| +.+..|+.+..                    ....+.||||++ .  ++
T Consensus       425 ~~~~~~~~~~g~~~~~~~~~~ll~~---~g-I~v~pg~~f~~--------------------~~g~~~iRis~~-~~~e~  479 (500)
T 3tcm_A          425 QKAIEAAKAANKAPDAFYALRLLES---TG-IVVVPGSGFGQ--------------------VPGTWHFRCTIL-PQEDK  479 (500)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHH---HC-EECEESTTTCC--------------------CTTCCBEEEESC-SCTTT
T ss_pred             hhhHHHHHhcCCCcHHHHHHHHHHH---CC-EEEEeCcccCC--------------------CCCCCEEEEEEC-CCHHH
Confidence            10            1122 233433   23 67776655421                    011468999999 5  56


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 013079          428 LDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       428 ~~~~i~~l~~al~~~~~~  445 (450)
                      +++.++.|.++++++.++
T Consensus       480 i~~~i~~l~~~~~~~~~~  497 (500)
T 3tcm_A          480 IPAVISRFTVFHEAFMSE  497 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888899999888877653

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.95  E-value=8.9e-27  Score=235.57  Aligned_cols=264  Identities=20%  Similarity=0.264  Sum_probs=204.0

Q ss_pred             CCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE---ecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhHHHHHH--
Q 013079           86 PDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC---TASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGTHALLT--  159 (450)
Q Consensus        86 n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~---tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~~~~~~--  159 (450)
                      ++.++|.|+   ++.++++++.+++++|.+...+   ++|   |++|+.+++.+++++||+|++.. +.|.++...+.  
T Consensus        55 ~~~~g~~y~---~~~~~~l~~~la~~~g~~~~~~~i~~~s---Gt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~  128 (431)
T 3ht4_A           55 IPTTGYGYD---DIGRDTLEKVYADVFGAEAGLVRPQIIS---GTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVR  128 (431)
T ss_dssp             CCCCTTCCS---CHHHHHHHHHHHHHTTCSEECCBTTSCS---HHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSS
T ss_pred             CCCCCCCCC---hhhHHHHHHHHHHHhCCCcccccceeeC---HHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhc
Confidence            345556665   4568999999999999987755   678   99999999999999999999998 99998887652  


Q ss_pred             ----HhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEec-CCCCccc---ccCHHHHHHHHHh--cCCEEEE
Q 013079          160 ----HFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFES-ISNPTLA---VANIPELSRLAHD--KGVTVVV  224 (450)
Q Consensus       160 ----~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~-~~NptG~---v~~l~~I~~la~~--~gi~liv  224 (450)
                          ..+.. .|+++++++.+     |+++|++++ +++|++|++++ |+||+|.   +.++++|+++|++  +|+++|+
T Consensus       129 g~~~~~~~~-~G~~~~~v~~~~~~~~d~e~l~~~l-~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~liv  206 (431)
T 3ht4_A          129 GKGVGSFKE-YNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFV  206 (431)
T ss_dssp             SCSSSCSGG-GTCEEEECCBCTTSSBCHHHHHHHC-CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             ccccchHHH-cCCEEEEeCCCCCCCcCHHHHHhhc-CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEE
Confidence                22233 68999999874     999999999 88999999995 6666554   5679999999999  9999999


Q ss_pred             eCCCCCCC--CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh--hhccCCCchHHHHHHHHccCC
Q 013079          225 DNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA--LMLLGPTMNPKVAFELSERIP  300 (450)
Q Consensus       225 D~~~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~--~~~~g~~~~~~~a~~~~~~~~  300 (450)
                      |++|+.+.  .++..+++|++++|+||++|+.+...||++++++++++.+.......  ....++++.  .++.+...++
T Consensus       207 Dea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~--~~~~~~~~l~  284 (431)
T 3ht4_A          207 DNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLY--SLQEMYQGFF  284 (431)
T ss_dssp             ECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCS--CSHHHHHHHH
T ss_pred             eCCChhhccCCCccccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHH--HHHHHHhHhh
Confidence            99995543  56777899999999999988754445699999999998887644311  112222222  1222344556


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       301 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      .+..+++++.+++.++.+.|++++.++ +|. ++++             +.+.++.|.+++.+.+.+|++.|+.
T Consensus       285 ~~~~~~~~~~~~a~~l~~~L~~~g~~v-~p~-~~~~-------------~~~li~~i~l~~~~~~~~~~~~l~~  343 (431)
T 3ht4_A          285 LAPHVAGQALKGAIFTAAFLEKLGMNT-SPA-WNAP-------------RTDLIQSVQFDDKDRMIAFCQAIQY  343 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCE-ESC-TTSC-------------CSSSCCEEECCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCcCEe-cCC-CCCC-------------CccEEEEEEeCCHHHHHHHHHHHHh
Confidence            677788889999999999999998877 565 3333             2455899999988888999999986

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.95  E-value=2.6e-26  Score=229.24  Aligned_cols=295  Identities=14%  Similarity=0.130  Sum_probs=201.6

Q ss_pred             CChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           97 FNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      ..+..+++++.+++++|.+   .+++|+|   |++|+.+++.+++++||+|+++.++|+++. .. ..... .|.++.++
T Consensus        50 ~~~~~~~l~~~la~~~g~~~~~~i~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~-~~~~~-~g~~~~~v  123 (393)
T 2huf_A           50 TLKIMDDIKEGVRYLFQTNNIATFCLSAS---GHGGMEATLCNLLEDGDVILIGHTGHWGDR-SA-DMATR-YGADVRVV  123 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCSEEEEESSC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHH-HH-HHHHH-TTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEEcCc---HHHHHHHHHHHHhCCCCEEEEECCCcchHH-HH-HHHHH-cCCeeEEE
Confidence            3467899999999999974   4789999   999999999999999999999999999853 11 12122 58888888


Q ss_pred             CC-----CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEe
Q 013079          174 DI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVH  245 (450)
Q Consensus       174 ~~-----~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~  245 (450)
                      +.     .|+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|+++.  ....+....++|+++.
T Consensus       124 ~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~  202 (393)
T 2huf_A          124 KSKVGQSLSLDEIRDAL-LIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYT  202 (393)
T ss_dssp             ECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEC
T ss_pred             eCCCCCCCCHHHHHHHH-hccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEE
Confidence            74     3899999999 66 89999999999999999999999999999999999999983  2223333457899999


Q ss_pred             CCCCc-cccCccceEEEEEcCHHHHHHHHHHh---hhhh-----------------hccCCC-chHHHHH-HHHccC--C
Q 013079          246 SISKF-ISGGADIIAGAVCGPANLVNSMMDLH---QGAL-----------------MLLGPT-MNPKVAF-ELSERI--P  300 (450)
Q Consensus       246 S~sK~-~g~~g~~igG~l~~~~~~~~~l~~~~---~~~~-----------------~~~g~~-~~~~~a~-~~~~~~--~  300 (450)
                      |+||+ +|++|  + |+++.++++++.+....   ..+.                 ...+.. .....+. .++...  .
T Consensus       203 s~sK~l~g~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~  279 (393)
T 2huf_A          203 GSQKVLGAPPG--I-TPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEE  279 (393)
T ss_dssp             CSSSTTCCCSS--C-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccCCC--e-EEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            99997 45666  4 88888988888776431   1000                 011121 2222211 122222  1


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccc
Q 013079          301 HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGF  380 (450)
Q Consensus       301 ~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~  380 (450)
                      .+....+++.++++++.+.|++++..+..|.     .           ...+++++|.++.......+.+.|...  +| 
T Consensus       280 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~L~~~--~g-  340 (393)
T 2huf_A          280 GLPALIARHEDCAKRLYRGLQDAGFELYADP-----K-----------DRLSTVTTIKVPQGVDWLKAAQYAMKT--YL-  340 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG-----G-----------GBCTTEEEEECCTTCCHHHHHHHHHHH--HC-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCeeccCc-----c-----------ccCCcEEEEEcCCCCCHHHHHHHHHHh--CC-
Confidence            2555667778899999999988765543321     0           012458889986222245666666431  23 


Q ss_pred             cccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCC----HHHHHHHHHHHHHHhhh
Q 013079          381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGT----LDQRWSQFEKALSRMQD  444 (450)
Q Consensus       381 i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~----~~~~i~~l~~al~~~~~  444 (450)
                      +.+..|..+                       ..++.||||+ + ..+    .+++++.|.+++.+++.
T Consensus       341 i~v~~g~~~-----------------------~~~~~~Ri~~~~-~~~~~e~i~~~~~~l~~~~~~~~~  385 (393)
T 2huf_A          341 VEISGGLGP-----------------------TAGQVFRIGLMG-QNATTERVDRVLQVFQEAVAAVKP  385 (393)
T ss_dssp             EECBCCCGG-----------------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEecCccc-----------------------ccCCEEEEEccc-CcCCHHHHHHHHHHHHHHHHHcCC
Confidence            555555321                       0257899999 6 433    44445555555555443

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.95  E-value=2.1e-26  Score=232.22  Aligned_cols=277  Identities=16%  Similarity=0.156  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHh----CCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079          101 VLNLSRQMAALE----GTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus       101 ~~~l~~~iA~l~----g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      ..++++.+++++    +.+   .+++|+|   |++|+.+++++++++||+|+++.|.|+++...+.     ..|.++..+
T Consensus        82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g---~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~-----~~g~~~~~v  153 (418)
T 3rq1_A           82 IPDFLCAAEKECFGNFRPEGHIRSIATAG---GTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICS-----DTGRTLVTY  153 (418)
T ss_dssp             CHHHHHHHHHHHHGGGCCSSEEEEEEESH---HHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEE
T ss_pred             hHHHHHHHHHHHhcccCccccccEEECCc---hHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHH-----HcCCEEEEE
Confidence            445666666644    667   8999999   9999999999999999999999999999988775     368888888


Q ss_pred             CCC------CHHHHHHhhhcC----Cce-EEEEecC-CCCcccccCHH---HHHHHHH------hcCCEEEEeCCCCCCC
Q 013079          174 DIS------DHEMVNSAIVQG----RTK-VLYFESI-SNPTLAVANIP---ELSRLAH------DKGVTVVVDNTFSPLV  232 (450)
Q Consensus       174 ~~~------d~~~l~~ai~~~----~t~-lv~i~~~-~NptG~v~~l~---~I~~la~------~~gi~livD~~~~~~~  232 (450)
                      +.+      |+++|++++ ++    +++ +|++++| |||||.+.+.+   +|+++|+      ++|+++|+|++|..+.
T Consensus       154 ~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~  232 (418)
T 3rq1_A          154 SLFDEHNNFNHEAFQNRV-NELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYS  232 (418)
T ss_dssp             CSBCTTSSBCHHHHHHHH-HHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGS
T ss_pred             eeeCCCCCcCHHHHHHHH-HHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc
Confidence            752      789999988 43    566 8889999 99999998855   5556666      8999999999996554


Q ss_pred             CCc------cC----CCC---eEEEeCCCCccccCccceEEEEEc---CHHHHHHHHHHhhhhhh--cc-CCCchHHHHH
Q 013079          233 LSP------AR----LGA---DVVVHSISKFISGGADIIAGAVCG---PANLVNSMMDLHQGALM--LL-GPTMNPKVAF  293 (450)
Q Consensus       233 ~~~------~~----~g~---di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~~~~~~~~--~~-g~~~~~~~a~  293 (450)
                      ...      ..    +..   .++++|+||.+|++|+|+ ||+++   ++++++.+.........  .. .+...+.++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  311 (418)
T 3rq1_A          233 GEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRV-GAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMA  311 (418)
T ss_dssp             SCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCC-EEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcc-eEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHH
Confidence            431      11    112   388899999999999998 99887   88898888765442211  11 2223333333


Q ss_pred             HHHccCC-------cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHH
Q 013079          294 ELSERIP-------HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN  366 (450)
Q Consensus       294 ~~~~~~~-------~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~  366 (450)
                      .++...+       .+....+++.++++.+.+.|++++..+..|.                   .|.++++.+++   ..
T Consensus       312 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~---~~  369 (418)
T 3rq1_A          312 NIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLPYR-------------------GGFFITIPTDS---AN  369 (418)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC-------------------SSSEEEEECTT---HH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------------------ceEEEEcCCCC---HH
Confidence            3332221       1123335567888889999988765543222                   34567777754   34


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~  442 (450)
                      .+.+.|..   .| +.+..|                            .+.||||++ .   +++++.++.|.++++++
T Consensus       370 ~~~~~l~~---~g-i~v~~g----------------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~  415 (418)
T 3rq1_A          370 AICEELKK---EH-IYVIAL----------------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL  415 (418)
T ss_dssp             HHHHHHHH---TT-EECEEC----------------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred             HHHHHHHh---CC-EEEecC----------------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence            55555553   23 444433                            357999998 4   33444455666665554

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.95  E-value=1e-26  Score=229.27  Aligned_cols=289  Identities=15%  Similarity=0.140  Sum_probs=199.4

Q ss_pred             hhHHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhccCCCEEEEeC-CCchhH-HHHHHHhCCCccCeeEEE
Q 013079           99 PTVLNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCSSGGHVVAAR-TLYGGT-HALLTHFFPRACNITTTF  172 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~-~~y~~~-~~~~~~~~~~~~g~~v~~  172 (450)
                      +..+++++.+|+++|..    .+++|+|   |++|+++++.+++++||+|++.+ +.|+.. ...+.     ..|.++.+
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-----~~g~~~~~  108 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGS---GSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAG-----LMGIAHHA  108 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESC---HHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHH-----HHTCCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecC---hHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHH-----HhCCceEE
Confidence            67899999999999842    5899999   99999999999999999887765 555543 23332     25777777


Q ss_pred             eCC-----CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEE
Q 013079          173 VDI-----SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV  244 (450)
Q Consensus       173 v~~-----~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~  244 (450)
                      ++.     .|+++|++++.+. ++++|++.+++||||.+.|+++|.++|+++|+++|+|++|+  ....+....++|+++
T Consensus       109 v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~  188 (366)
T 1m32_A          109 YDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLI  188 (366)
T ss_dssp             EECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEE
T ss_pred             EeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEE
Confidence            765     3899999998432 58999999999999999999999999999999999999984  222333345789999


Q ss_pred             eCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhhhh----------h----hccCCCchHH---HHHHHHccCC-c--HH
Q 013079          245 HSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQGA----------L----MLLGPTMNPK---VAFELSERIP-H--LG  303 (450)
Q Consensus       245 ~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~----------~----~~~g~~~~~~---~a~~~~~~~~-~--l~  303 (450)
                      .|+||++ ++.|  + |+++.++++++.+.......          .    .....+.+..   ++..++.... .  +.
T Consensus       189 ~s~~K~~~~~~g--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~  265 (366)
T 1m32_A          189 SSANKCIQGVPG--F-AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVA  265 (366)
T ss_dssp             EESSSTTCCCSS--E-EEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             ecCcccccCCCc--e-EEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHh
Confidence            9999977 5444  5 99999888776543210000          0    0000122222   2222222221 1  34


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccc
Q 013079          304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFM  381 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i  381 (450)
                      ...+++.++++++.+.|++++..+..|.     .           ...|.+++|.++.  ......+.+.|...   | +
T Consensus       266 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i  325 (366)
T 1m32_A          266 ARHQRYQQNQRSLVAGMRALGFNTLLDD-----E-----------LHSPIITAFYSPEDPQYRFSEFYRRLKEQ---G-F  325 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCBSSCG-----G-----------GBCSSEEEEECCCCTTCCHHHHHHHHHHT---T-E
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCeeccCc-----h-----------hcCceEEEEEcCccCCCCHHHHHHHHHHC---C-E
Confidence            5566778899999999988755443321     0           0135589999873  22356677777642   3 5


Q ss_pred             ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          382 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       382 ~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .+..|..+                        ..+.||||++ ..++++.++.+.++|.++.
T Consensus       326 ~v~~~~~~------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~  362 (366)
T 1m32_A          326 VIYPGKVS------------------------QSDCFRIGNI-GEVYAADITALLTAIRTAM  362 (366)
T ss_dssp             ECEECCCS------------------------SSCEEEEECC-SSCCHHHHHHHHHHHHHHC
T ss_pred             EEECCcCC------------------------CCCEEEEecC-CCCCHHHHHHHHHHHHHHH
Confidence            55555321                        1478999999 8777888888888887664

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.95  E-value=9e-27  Score=234.44  Aligned_cols=316  Identities=15%  Similarity=0.122  Sum_probs=210.3

Q ss_pred             cccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc------
Q 013079           68 FTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC------  138 (450)
Q Consensus        68 ~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~------  138 (450)
                      +..+. .+++.+.+...++++.....|.....+..+++++.+++++|.+  .+++|+|   |++++.+++.+++      
T Consensus        39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~al~~al~~~~~~~~~~  115 (416)
T 1qz9_A           39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDT---TSINLFKVLSAALRVQATR  115 (416)
T ss_dssp             CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSC---HHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCC---hhHHHHHHHHhhccccccc
Confidence            44445 3777777766566653221232223467899999999999975  7899999   9999998888776      


Q ss_pred             cCCCE-EEEeCCCchhHHHHHHHhCCCcc--CeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHH
Q 013079          139 SSGGH-VVAARTLYGGTHALLTHFFPRAC--NITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA  215 (450)
Q Consensus       139 ~~gd~-Vi~~~~~y~~~~~~~~~~~~~~~--g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la  215 (450)
                      ++||+ |+++.+.|+++...+..+... .  |.++.+++.  +++|++++ ++++++|++++++||||.+.|+++|.++|
T Consensus       116 ~~gd~vii~~~~~~~~~~~~~~~~~~~-~~~g~~~~~v~~--~~~l~~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~l~  191 (416)
T 1qz9_A          116 SPERRVIVTETSNFPTDLYIAEGLADM-LQQGYTLRLVDS--PEELPQAI-DQDTAVVMLTHVNYKTGYMHDMQALTALS  191 (416)
T ss_dssp             STTCCEEEEETTSCHHHHHHHHHHHHH-HCSSCEEEEESS--GGGHHHHC-STTEEEEEEESBCTTTCBBCCHHHHHHHH
T ss_pred             CCCCcEEEEcCCCCCchHHHHHHHHHH-hcCCceEEEeCc--HHHHHHHh-CCCceEEEEeccccCcccccCHHHHHHHH
Confidence            88986 566667888766554322111 3  888989886  78899988 77899999999999999999999999999


Q ss_pred             HhcCCEEEEeCCCC--CCCCCccCCCCeEEEeCCCCccc-cCccceEEEEEcCHHHHHHHHHHhhhh-------------
Q 013079          216 HDKGVTVVVDNTFS--PLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA-------------  279 (450)
Q Consensus       216 ~~~gi~livD~~~~--~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~-------------  279 (450)
                      +++|+++|+|++|+  ....+...+++|+++.|+||+++ +++. + |+++.++++++.+.....++             
T Consensus       192 ~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~-~-g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~  269 (416)
T 1qz9_A          192 HECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS-Q-AFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRY  269 (416)
T ss_dssp             HHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC-C-CEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSC
T ss_pred             HHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCC-e-EEEEECHHHHhccCCCccccCccccccCCCCcc
Confidence            99999999999983  22223233478999999999974 4442 3 88888877765553321110             


Q ss_pred             -------hhccCCC-chHH-HHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHH
Q 013079          280 -------LMLLGPT-MNPK-VAFELSER--IPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSM  344 (450)
Q Consensus       280 -------~~~~g~~-~~~~-~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~  344 (450)
                             ....++. .... ++..++..  .+.+....+++.++++++.+.|+++    +..+..|..   +        
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~---~--------  338 (416)
T 1qz9_A          270 EPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPRE---H--------  338 (416)
T ss_dssp             CBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSS---G--------
T ss_pred             CCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCC---H--------
Confidence                   0111221 1122 22222222  2456667778888999999999875    455543320   0        


Q ss_pred             hccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC
Q 013079          345 ANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY  424 (450)
Q Consensus       345 ~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~  424 (450)
                          ...+++++|.+++   ...+.+.|...   | +.+..                           ..++.||||++ 
T Consensus       339 ----~~~~~~~~~~~~~---~~~l~~~l~~~---g-i~~~~---------------------------~~~~~lRis~~-  379 (416)
T 1qz9_A          339 ----AKRGSHVSFEHPE---GYAVIQALIDR---G-VIGDY---------------------------REPRIMRFGFT-  379 (416)
T ss_dssp             ----GGBCSEEEEECTT---HHHHHHHHHTT---T-EECEE---------------------------ETTTEEEEECC-
T ss_pred             ----HHcCCEEEEecCC---HHHHHHHHHhC---C-cEecc---------------------------CCCCeEEEeCc-
Confidence                0135689999875   34566666542   2 22210                           01478999997 


Q ss_pred             C-CCHHHHHHHHHHHHHHh
Q 013079          425 L-GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       425 ~-~~~~~~i~~l~~al~~~  442 (450)
                      . ..+++.++.+.++|.++
T Consensus       380 ~~~~t~~~i~~~~~~l~~~  398 (416)
T 1qz9_A          380 PLYTTFTEVWDAVQILGEI  398 (416)
T ss_dssp             TTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHH
Confidence            4 45566666666666554

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.95  E-value=3.8e-26  Score=226.48  Aligned_cols=307  Identities=17%  Similarity=0.202  Sum_probs=218.0

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ..+..+++++.+|+++|.+.+++|+|   ||+|+++++.++ +++||+|+++.++|+++...+.     ..|.++.+++.
T Consensus        33 ~~~~~~~l~~~la~~~~~~~~~~~~s---Gt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~~~~  104 (367)
T 3nyt_A           33 LGPEVTELEDRLADFVGAKYCISCAN---GTDALQIVQMALGVGPGDEVITPGFTYVATAETVA-----LLGAKPVYVDI  104 (367)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECB
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HcCCEEEEEec
Confidence            46789999999999999999999999   999999999998 8999999999999999988875     36888888876


Q ss_pred             C------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC--eEEEeC
Q 013079          176 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--DVVVHS  246 (450)
Q Consensus       176 ~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~--di~~~S  246 (450)
                      +      |+++|++++ ++++++|+   ++||+|...|+++|.++|+++|+++|+|++|+ +..++....+.  |+++.|
T Consensus       105 ~~~~~~~d~~~l~~~i-~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S  180 (367)
T 3nyt_A          105 DPRTYNLDPQLLEAAI-TPRTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTS  180 (367)
T ss_dssp             CTTTCSBCGGGTGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEE
T ss_pred             CCccCCcCHHHHHHhc-CcCCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEE
Confidence            5      889999999 88899888   78999999999999999999999999999983 33333333333  999999


Q ss_pred             C--CCccccCccceEEEEEc-CHHHHHHHHHHhhhhhh--------ccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013079          247 I--SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM--------LLGPTMNPKVAFELSERIPHLGLRMKEHCHRALI  315 (450)
Q Consensus       247 ~--sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~--------~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~  315 (450)
                      +  +|+++++|.  ||+++. ++++.+.+...+.....        .....+....++.....++.++...++.++++++
T Consensus       181 f~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~  258 (367)
T 3nyt_A          181 FFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAE  258 (367)
T ss_dssp             CCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6  899997675  588876 57788877765542110        0123344555555544556667777777888899


Q ss_pred             HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          316 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       316 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      +.+.|++.+..+.  ..+....            ....++.+.+++   .+.+...|...+    |.++.+....+-..+
T Consensus       259 ~~~~L~~~~~~~~--~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~G----I~~~~~~~~~~~~~~  317 (367)
T 3nyt_A          259 YDLSLKQVGIGTP--FIEVNNI------------SVYAQYTVRMDN---RESVQASLKAAG----VPTAVHYPIPLNKQP  317 (367)
T ss_dssp             HHHHHHHTTCCCC--CCCTTEE------------CCCSSEEEECSS---HHHHHHHHHHHT----CCCBCSCSSCGGGSG
T ss_pred             HHHHhccCCeecc--CCCCCCc------------eeeEEEEEEeCC---HHHHHHHHHHCC----CceeccCCCccccCh
Confidence            9999998764322  1111000            112346666664   345666666433    566665432222222


Q ss_pred             ccc-cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          396 GSS-TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       396 ~~~-~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      ... ....++......    ...||++++ ...++++++.+.+++.+.+
T Consensus       318 ~~~~~~~~~~~~~~~~----~~~l~lp~~-~~~t~~~i~~v~~~~~~~~  361 (367)
T 3nyt_A          318 AVADEKAKLPVGDKAA----TQVMSLPMH-PYLDTASIKIICAALTNLE  361 (367)
T ss_dssp             GGCCTTCCCHHHHHHH----HHEEEECCC-TTCCHHHHHHHHHHHHC--
T ss_pred             hhhccCCCChHHHHHH----hCeEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence            221 122232222222    478999999 9999999999999887653

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.95  E-value=2e-26  Score=229.62  Aligned_cols=291  Identities=14%  Similarity=0.176  Sum_probs=200.3

Q ss_pred             ChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhH--HHHHHHhCCCccCeeEEE
Q 013079           98 NPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGT--HALLTHFFPRACNITTTF  172 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~--~~~~~~~~~~~~g~~v~~  172 (450)
                      .+..+++++.++++++.+   .+++|+|   |++|+.+++++++++||+|+++.+.|.+.  ...+.     ..|.++..
T Consensus        55 ~~~~~~l~~~la~~~~~~~~~~v~~~~g---g~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-----~~g~~~~~  126 (393)
T 3kgw_A           55 LQIMEEIKQGIQYVFQTRNPLTLVVSGS---GHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIAD-----RIGARVHQ  126 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESCC---TTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH-----HTTCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCC---cHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHH-----HcCCceEE
Confidence            456789999999999864   4789999   99999999999999999999998888643  23332     26778887


Q ss_pred             eCCC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEE
Q 013079          173 VDIS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVV  244 (450)
Q Consensus       173 v~~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~  244 (450)
                      ++.+     |+++|++++ ++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+  ....+....++|+++
T Consensus       127 ~~~~~~~~~d~~~l~~~i-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~  205 (393)
T 3kgw_A          127 MIKKPGEHYTLQEVEEGL-AQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMY  205 (393)
T ss_dssp             EECCTTCCCCHHHHHHHH-HHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEE
T ss_pred             EeCCCCCCCCHHHHHHHH-hhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEE
Confidence            7743     899999999 55 89999999999999999999999999999999999999983  333444556889999


Q ss_pred             eCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhhhhh-------------------hccCCCchH--HHHH-HHHccC--
Q 013079          245 HSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQGAL-------------------MLLGPTMNP--KVAF-ELSERI--  299 (450)
Q Consensus       245 ~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~~~-------------------~~~g~~~~~--~~a~-~~~~~~--  299 (450)
                      .|+||++ ++.|  + |+++.++++++.+........                   .....+.+.  ..+. .++...  
T Consensus       206 ~s~sK~~~~~~g--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~  282 (393)
T 3kgw_A          206 SSSQKVLNAPPG--I-SLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAE  282 (393)
T ss_dssp             EESSSTTCCCSS--C-EEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             ecCcccccCCCc--e-eEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999976 4555  5 999999998887754221100                   001112222  2221 222211  


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079          300 PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG  379 (450)
Q Consensus       300 ~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g  379 (450)
                      ..+....+++.++++++.+.|++++.++..|..               ....+.+++|.++.......+.+.|...  +|
T Consensus       283 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~g  345 (393)
T 3kgw_A          283 QGLENCWRRHREATAHLHKHLQEMGLKFFVKDP---------------EIRLPTITTVTVPAGYNWRDIVSYVLDH--FS  345 (393)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSG---------------GGBCSSEEEEECCTTBCHHHHHHHHHHH--HC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCeeccCCh---------------hhcCCeEEEEeCCCCCCHHHHHHHHHHh--CC
Confidence            235666777889999999999988665433220               0124567889987332355666666542  23


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCC----CHHHHHHHHHHHHHHh
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLG----TLDQRWSQFEKALSRM  442 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~----~~~~~i~~l~~al~~~  442 (450)
                       +.+..|..+                       ..++.||||+ + ..    +.++.++.|.++++++
T Consensus       346 -i~v~~g~~~-----------------------~~~~~iRi~~~~-~~~~~~~i~~~~~~l~~~l~~~  388 (393)
T 3kgw_A          346 -IEISGGLGP-----------------------TEERVLRIGLLG-YNATTENVDRVAEALREALQHC  388 (393)
T ss_dssp             -EECBCCCGG-----------------------GTTTEEEEECCG-GGCCHHHHHHHHHHHHHHHHHS
T ss_pred             -EEEeCCccc-----------------------CCCCEEEEEecc-cCCCHHHHHHHHHHHHHHHHhh
Confidence             555555321                       1257899998 7 53    3444445555555444

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.95  E-value=2.7e-26  Score=230.04  Aligned_cols=214  Identities=14%  Similarity=0.087  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHhC--------CCeEEE--ecChHHHHHHHHHHHHHhc---cCCCEEEEeCCCchhHHHHHHHhCCCccC
Q 013079          101 VLNLSRQMAALEG--------TEAAYC--TASDKAGMSAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus       101 ~~~l~~~iA~l~g--------~~~~~~--tsg~~~gt~ai~~al~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      ..++++.+|++++        .+++++  |+|   |++|+++++..+.   ++||+|++++|+|.++...+.     ..|
T Consensus        73 ~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G---~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g  144 (401)
T 7aat_A           73 LADFTRASAELALGENSEAFKSGRYVTVQGIS---GTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFR-----DAG  144 (401)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHH-----HTT
T ss_pred             CHHHHHHHHHHhcCCCccccccCceEEEecCc---chHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHH-----HcC
Confidence            4567788887764        567766  999   9999999887664   889999999999999988875     357


Q ss_pred             eeEEEeCCC-------CHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079          168 ITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       168 ~~v~~v~~~-------d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~  235 (450)
                      .++..++.+       |++++++.++  ++++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.+..
T Consensus       145 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~  224 (401)
T 7aat_A          145 LQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGD  224 (401)
T ss_dssp             CEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC
T ss_pred             CeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCC
Confidence            777777642       7787776663  357899999999999998865   7789999999999999999996665432


Q ss_pred             ------------cCCCCeEEEeCCCCccccCccceEEEEEc---CHHH----HHHHHHHhhhhhhccCCCchHHHHHHHH
Q 013079          236 ------------ARLGADVVVHSISKFISGGADIIAGAVCG---PANL----VNSMMDLHQGALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       236 ------------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~----~~~l~~~~~~~~~~~g~~~~~~~a~~~~  296 (450)
                                  .....++++.|+||.+|++|+|+ ||++.   +++.    ...+....... ....+...+..+..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~Ri-G~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  302 (401)
T 7aat_A          225 INRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTVICRDAEEAKRVESQLKILIRPM-YSNPPMNGARIASLIL  302 (401)
T ss_dssp             HHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHhcCCcEEEEecCCcccccccCce-EEEEEEeCCHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHh
Confidence                        11256789999999999999998 88764   5553    34444333311 1122222222232222


Q ss_pred             cc-------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          297 ER-------IPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       297 ~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      ..       .+++.+..+++.++++++.+.|++++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  337 (401)
T 7aat_A          303 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG  337 (401)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            21       22344555677888999999998874

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.95  E-value=5.9e-27  Score=237.18  Aligned_cols=335  Identities=15%  Similarity=0.099  Sum_probs=207.9

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc--------cCCC
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC--------SSGG  142 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~--------~~gd  142 (450)
                      .+++.+.+...+++|.+.|.+++...+..+++++.||+++|.+  .+++|+|   |++|+++++.+++        ++||
T Consensus        35 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~~~~~gd  111 (432)
T 3a9z_A           35 IQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSG---GTESNNLVIHSTVRCFHEQQTLQGR  111 (432)
T ss_dssp             HHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESC---HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCC---hHHHHHHHHHHHHhhhhhccccCCc
Confidence            3677777666677887767666656677899999999999974  6899999   9999999999876        4787


Q ss_pred             EEEEeCCCc-------------hhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcc
Q 013079          143 HVVAARTLY-------------GGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTL  203 (450)
Q Consensus       143 ~Vi~~~~~y-------------~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG  203 (450)
                      +|++..|.|             +++...+..+... .|.++.+++.+      |+++|++++ ++++++|++++|+||||
T Consensus       112 ~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~-~g~~v~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~nptG  189 (432)
T 3a9z_A          112 TVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVED-QVAEVTFVPVSKVNGQVEVEDILAAV-RPTTCLVTIMLANNETG  189 (432)
T ss_dssp             ----------CCCEEEEETTCCHHHHHHHHHHHHT-TSCEEEEECCCTTTSSCCHHHHHHTC-CTTEEEEECCSBCTTTC
T ss_pred             cccccccccccCCeEEEecCcchhHHHHHHHHHHh-cCcEEEEEecCcccCCcCHHHHHHhc-cCCceEEEEECcccCcc
Confidence            666555555             4444444332222 58888888753      789999999 78899999999999999


Q ss_pred             cccCHHHHHHHHHhcC----------CEEEEeCCCCCCC--CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HH
Q 013079          204 AVANIPELSRLAHDKG----------VTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANL-VN  270 (450)
Q Consensus       204 ~v~~l~~I~~la~~~g----------i~livD~~~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~  270 (450)
                      .+.|+++|.++|+++|          +++|+|++|+...  .+....+.|+++.|+||++| +  ++ |+++.+++. ..
T Consensus       190 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~--~~-G~~~~~~~~~~~  265 (432)
T 3a9z_A          190 VIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-P--RI-GALYVRGVGKLT  265 (432)
T ss_dssp             BBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-C--SC-EEEEETTBTTTB
T ss_pred             cccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcC-C--cc-eEEEEccccccC
Confidence            9999999999999999          9999999993322  22223478999999999986 3  35 998887654 22


Q ss_pred             HHHHHhhh----hhhccCCC--chHHHHHHHHccC-CcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHH
Q 013079          271 SMMDLHQG----ALMLLGPT--MNPKVAFELSERI-PHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLK  342 (450)
Q Consensus       271 ~l~~~~~~----~~~~~g~~--~~~~~a~~~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~  342 (450)
                      .+.....+    .....+..  ....++..++... +.+....+++.++++++.+.|+++ +..+..++...        
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--------  337 (432)
T 3a9z_A          266 PLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFP--------  337 (432)
T ss_dssp             CCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCT--------
T ss_pred             CcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCC--------
Confidence            22111000    00011211  1121221222211 234455666788889999999875 44443221100        


Q ss_pred             HHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCe
Q 013079          343 SMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGL  417 (450)
Q Consensus       343 ~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~  417 (450)
                          +....+++++|.+++. .....+++.+..      +.++.|..|+....       ..........|+.    .+.
T Consensus       338 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------i~~~~G~~~~~~~~-------~~~~~~l~~~g~~~~~~~~~  400 (432)
T 3a9z_A          338 ----GVERLPNTCNFSIQGSQLRGYMVLAQCQT------LLASVGASCHSDHE-------DRPSPVLLSCGIPVDVARNA  400 (432)
T ss_dssp             ----TCCBCTTEEEEEECSTTCCHHHHHHHCSS------EECBSSCGGGGGGT-------TSCCHHHHHTTCCHHHHTTE
T ss_pred             ----cccCCCCEEEEEeCCCCCcHHHHHHHhcC------eEEeccccccCCCC-------CCccHHHHhcCCCccccCce
Confidence                0012456888998742 123456665542      56677766543210       0011222334443    478


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          418 VRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       418 iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ||||++ ..++++.++.+.++|.++
T Consensus       401 iRis~~-~~~t~eei~~~~~~l~~~  424 (432)
T 3a9z_A          401 VRLSVG-RSTTRAEVDLIVQDLKQA  424 (432)
T ss_dssp             EEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred             EEEEcC-CCCCHHHHHHHHHHHHHH
Confidence            999999 765566666665555543

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.95  E-value=2.8e-26  Score=231.68  Aligned_cols=291  Identities=12%  Similarity=0.086  Sum_probs=200.7

Q ss_pred             hhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHH--HHHHHhcc--C---------CCEEEEeCCCchhHHHHHHHhCC
Q 013079           99 PTVLNLSRQMAALEGT--EAAYCTASDKAGMSAIS--SVLMQLCS--S---------GGHVVAARTLYGGTHALLTHFFP  163 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~--~al~~l~~--~---------gd~Vi~~~~~y~~~~~~~~~~~~  163 (450)
                      +...++++.||++++.  +.+++|+|   ++++++  +++++++.  +         ||+|+++.|+|+++...+.    
T Consensus        70 ~g~~~lr~~ia~~~~~~~~~i~~t~G---~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~----  142 (423)
T 3ez1_A           70 AGLPSARALFAGYLDVKAENVLVWNN---SSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQ----  142 (423)
T ss_dssp             TCCHHHHHHHHHHTTSCGGGEEECSS---CHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHH----
T ss_pred             CChHHHHHHHHHHhCCChhhEEEeCC---cHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHH----
Confidence            4467899999999986  46899999   999998  88888877  7         5999999999999988775    


Q ss_pred             CccCeeEEEeCCC----CHHHHHHhhh-cCCceEEEEe-cCCCCcccccCHH---HHHHHH-HhcCCEEEEeCCCCCC--
Q 013079          164 RACNITTTFVDIS----DHEMVNSAIV-QGRTKVLYFE-SISNPTLAVANIP---ELSRLA-HDKGVTVVVDNTFSPL--  231 (450)
Q Consensus       164 ~~~g~~v~~v~~~----d~~~l~~ai~-~~~t~lv~i~-~~~NptG~v~~l~---~I~~la-~~~gi~livD~~~~~~--  231 (450)
                       ..|.++..++.+    |+++|++++. .+++++|+++ ++|||||.+.+.+   +|+++| +++|+++|+|++|..+  
T Consensus       143 -~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~  221 (423)
T 3ez1_A          143 -TLGFELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHL  221 (423)
T ss_dssp             -HHTCEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBC
T ss_pred             -HcCCEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhc
Confidence             257777777653    8999999994 4689999865 8999999998876   888888 8999999999999632  


Q ss_pred             CC-------Ccc-------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc
Q 013079          232 VL-------SPA-------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE  297 (450)
Q Consensus       232 ~~-------~~~-------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~  297 (450)
                      ..       +..       ..+.++++.|+||. +++|.|+ ||++.++++++.+....... ....+.+.+.++...+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~  298 (423)
T 3ez1_A          222 VEEDRAEPVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGL-GFVASSEDNIRWLSKYLGAQ-SIGPNKVEQARHVKFLT  298 (423)
T ss_dssp             CSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSC-EEEEECHHHHHHHHHHHHHS-CSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCcchhhhhhccCCCCeEEEEeCchhh-ccCCcce-EEEEeCHHHHHHHHHHHhhh-ccCCCHHHHHHHHHHHH
Confidence            11       111       23678999999999 5689998 99999999998887765521 12334444444444444


Q ss_pred             c-CC----cHHHHHHHHHHHHHHHHHHHHh----CC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHH
Q 013079          298 R-IP----HLGLRMKEHCHRALIFARRMKK----LG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN  366 (450)
Q Consensus       298 ~-~~----~l~~~~~~~~~~~~~l~~~L~~----~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~  366 (450)
                      . ..    ++....+.+.++++.+.+.|.+    .+  ..+..|.                   .|.++++.++.. ...
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~  358 (423)
T 3ez1_A          299 EYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK-------------------GGYFISLDTAEP-VAD  358 (423)
T ss_dssp             HSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS-------------------BSSCEEEEESSS-CHH
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC-------------------ccEEEEEECCCC-cHH
Confidence            3 22    2233334455666666666654    44  2333332                   567899999843 245


Q ss_pred             HHHHHhhcccccccccccc-ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC---CHHHHHHHHHHHHHHh
Q 013079          367 RLMNYLQNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG---TLDQRWSQFEKALSRM  442 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~-G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~---~~~~~i~~l~~al~~~  442 (450)
                      .+...+..   .| +.+.. |..+...                  .+..++.||||++ ..   ++++.++.|.+++.++
T Consensus       359 ~~~~~l~~---~g-v~v~~~g~~~~~~------------------~~~~~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          359 RVVKLAEA---AG-VSLTPAGATYPAG------------------QDPHNRNLRLAPT-RPPVEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             HHHHHHHH---TT-EECCCTTTTSSTT------------------CCSSSCEEEECCS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---CC-cEEecCcccccCC------------------CCCCCCeEEEEcC-CCCHHHHHHHHHHHHHHHHHH
Confidence            56666654   23 56555 4332110                  0112588999999 64   3444455566666554


Q ss_pred             h
Q 013079          443 Q  443 (450)
Q Consensus       443 ~  443 (450)
                      .
T Consensus       416 ~  416 (423)
T 3ez1_A          416 T  416 (423)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.95  E-value=6.2e-26  Score=226.40  Aligned_cols=323  Identities=16%  Similarity=0.173  Sum_probs=219.8

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCch
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYG  152 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~  152 (450)
                      +++.+.+...        .+++...+...++++.||+++|.+..+++++   |++|+++++.++ +++||+|+++.++|+
T Consensus        21 ~a~~~~l~~~--------~~~~~~~~~~~~l~~~la~~~~~~~~i~~~s---Gt~al~~~l~~l~~~~gd~Vi~~~~~~~   89 (388)
T 1b9h_A           21 NGLVRALEQG--------QWWRMGGDEVNSFEREFAAHHGAAHALAVTN---GTHALELALQVMGVGPGTEVIVPAFTFI   89 (388)
T ss_dssp             HHHHHHHHTS--------CCBTTTCSHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCT
T ss_pred             HHHHHHHHcC--------CeeecCCHHHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCccH
Confidence            5666665431        1334456789999999999999988889999   999999999998 899999999999999


Q ss_pred             hHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeC
Q 013079          153 GTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN  226 (450)
Q Consensus       153 ~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~  226 (450)
                      ++...+.     ..|.++.+++.+      |+++|++++ ++++++|+   |+||||.+.++++|.++|+++|+++|+|+
T Consensus        90 ~~~~~~~-----~~g~~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~  160 (388)
T 1b9h_A           90 SSSQAAQ-----RLGAVTVPVDVDAATYNLDPEAVAAAV-TPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDA  160 (388)
T ss_dssp             HHHHHHH-----HTTCEEEEECBCTTTCCBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEEC
T ss_pred             HHHHHHH-----HcCCEEEEEecCCCcCCCCHHHHHHhc-CcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEec
Confidence            9988774     368888888753      899999999 77888887   89999999999999999999999999999


Q ss_pred             CCCC-CCCC---ccCCCCeEEEeCCC--CccccCccceEEEEEcCHH-H--HHHHHHHhhhhh---------hccCC--C
Q 013079          227 TFSP-LVLS---PARLGADVVVHSIS--KFISGGADIIAGAVCGPAN-L--VNSMMDLHQGAL---------MLLGP--T  286 (450)
Q Consensus       227 ~~~~-~~~~---~~~~g~di~~~S~s--K~~g~~g~~igG~l~~~~~-~--~~~l~~~~~~~~---------~~~g~--~  286 (450)
                      +|+. ....   ...++ |+++.|+|  |++++  .++ |+++.+++ +  ++.+...+....         ...|.  .
T Consensus       161 a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g--~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  236 (388)
T 1b9h_A          161 AHAHGARWQGKRVGELD-SIATFSFQNGKLMTA--GEG-GAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMR  236 (388)
T ss_dssp             TTCTTCEETTEEGGGSS-SCEEEECCTTSSSCS--SSC-EEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCB
T ss_pred             chhcCCccCCeeccccc-ceEEEEccCCCcccC--CCe-EEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCC
Confidence            9943 3221   22334 56666665  66653  454 99887765 5  566654332110         01122  2


Q ss_pred             chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--H
Q 013079          287 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--E  363 (450)
Q Consensus       287 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~  363 (450)
                      +++..++.+...++.+.++.+++.++++++.+.|++++ ..+..+.....             ...+.+++|.+++.  .
T Consensus       237 ~~~~~~a~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~  303 (388)
T 1b9h_A          237 LNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRAD-------------RNSHYMAMFRIPGLTEE  303 (388)
T ss_dssp             CBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCC-------------BCCCSEEEEECTTCCHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCC-------------ccceEEEEEEeCCcCcc
Confidence            44444444444567777788888889999999999873 44432210000             02456899999842  3


Q ss_pred             HHHHHHHHhhccccccccccccccccccccccccc---cCC--------CCCHHHHHhcCCCCCeEEEEeCCCCC-HHHH
Q 013079          364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSS---TSS--------ELNAEEKALAGISAGLVRMSVGYLGT-LDQR  431 (450)
Q Consensus       364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~---~~~--------~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~  431 (450)
                      ....+.+.|...   | |.++.+...+- ..+...   ...        .++......    .+.|||+++ ... +++.
T Consensus       304 ~~~~l~~~L~~~---g-I~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~-~~~~t~ed  373 (388)
T 1b9h_A          304 RRNALVDRLVEA---G-LPAFAAFRAIY-RTDAFWELGAPDESVDAIARRCPNTDAIS----SDCVWLHHR-VLLAGEPE  373 (388)
T ss_dssp             HHHHHHHHHHHT---T-CCEEECCCCGG-GSHHHHHSSCCSSCHHHHHHTCHHHHHHH----HHEEEEEGG-GGGSCHHH
T ss_pred             cHHHHHHHHHHC---C-CCcccccCccc-cChHhHhcCCCcccccccccCCHHHHHHH----hCeEEecCC-CCCCCHHH
Confidence            467788887753   3 56665543110 000000   000        111121111    357999999 877 8888


Q ss_pred             HHHHHHHHHHhh
Q 013079          432 WSQFEKALSRMQ  443 (450)
Q Consensus       432 i~~l~~al~~~~  443 (450)
                      ++.+.++|.++.
T Consensus       374 i~~~~~~l~~~~  385 (388)
T 1b9h_A          374 LHATAEIIADAV  385 (388)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            899988887764

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.95  E-value=4.9e-26  Score=226.02  Aligned_cols=307  Identities=16%  Similarity=0.189  Sum_probs=212.4

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ..+..+++++.+|+++|.+.+++|+|   |++|+++++.++ +++||+|+++.++|+++...+.     ..|.++.+++.
T Consensus        34 ~~~~~~~l~~~la~~~~~~~~i~~~s---gt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~-----~~g~~~~~~~~  105 (373)
T 3frk_A           34 LGDEDKKFEQEFADYCNVNYCIGCGN---GLDALHLILKGYDIGFGDEVIVPSNTFIATALAVS-----YTGAKPIFVEP  105 (373)
T ss_dssp             SSHHHHHHHHHHHHHHTSSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH-----HHSCEEEEECE
T ss_pred             CCchHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEec
Confidence            46789999999999999999999999   999999999999 8999999999999999988775     35888888876


Q ss_pred             C------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeC
Q 013079          176 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHS  246 (450)
Q Consensus       176 ~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S  246 (450)
                      +      |+++|++++ ++++++|+   ++||||.+.|+++|.++|+++|+++|+|++|+ +..++....+  .|+++.|
T Consensus       106 ~~~~~~~d~~~l~~~l-~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S  181 (373)
T 3frk_A          106 DIRTYNIDPSLIESAI-TEKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFS  181 (373)
T ss_dssp             ETTTTEECGGGTGGGC-CTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred             cccccCcCHHHHHHhc-CCCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEe
Confidence            5      889999999 77899888   67899999999999999999999999999983 2334444444  7999999


Q ss_pred             CC--CccccCccceEEEEEcC-HHHHHHHHHHhhhhhh------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 013079          247 IS--KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALI  315 (450)
Q Consensus       247 ~s--K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~  315 (450)
                      ++  |+++++|.  ||+++.+ +++.+.+...+.+...      ..|  ..+....+.+....++.++...++..+++++
T Consensus       182 ~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~  259 (373)
T 3frk_A          182 FYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQK  259 (373)
T ss_dssp             CCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66  99987553  5888765 5677777655442110      011  1234444444443445566666677777888


Q ss_pred             HHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          316 FARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       316 l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      +.+.|++++  +..|..+....            ..-..+.+...+   ...+.+.|...+    |.++.+....+-..+
T Consensus       260 ~~~~l~~~~--~~~~~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~g----I~v~~~~~~~~~~~~  318 (373)
T 3frk_A          260 YIAGINNPN--VIIPVEADYAK------------HVWYTFVIRSEK---RDELQKYLNNNG----IGTLIHYPIPIHLQQ  318 (373)
T ss_dssp             HHHHCCCTT--EECCCCCTTEE------------CCCSSEEEEESS---HHHHHHHHHHTT----BCCBCSCSSCGGGSG
T ss_pred             HHHHhccCc--eEeccCCCCCc------------eeeEEEEEEeCC---HHHHHHHHHHCC----CCcccCcCCccccCh
Confidence            888887766  33333211000            011234455543   445666666433    666666432222222


Q ss_pred             cccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          396 GSST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       396 ~~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      ....    ...++..+...    .+.||||++ ...++++++.+.++|.+..
T Consensus       319 ~~~~~~~~~~~~~~~~~~~----~~~lrl~~~-~~~t~~di~~~~~~l~~~~  365 (373)
T 3frk_A          319 AYKDLGFKTGNFPIAEKIA----NEILSIPIW-YGMKNEEIEYVIDKINAWK  365 (373)
T ss_dssp             GGGGGCCCTTSSHHHHHHH----HHEEEECCC-TTCCHHHHHHHHHHHHTCC
T ss_pred             HHHhcCCCCCCCHHHHHHH----hCEEEccCC-CCCCHHHHHHHHHHHHHHh
Confidence            1111    01122222211    378999999 9999999999999988764

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.95  E-value=1e-26  Score=241.81  Aligned_cols=156  Identities=13%  Similarity=0.168  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHh----CC-------CeEEEecChHHHHHHHHHHHHH-----hccCCCEEEEeCCCchhHHHHHHHhCCCc
Q 013079          102 LNLSRQMAALE----GT-------EAAYCTASDKAGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRA  165 (450)
Q Consensus       102 ~~l~~~iA~l~----g~-------~~~~~tsg~~~gt~ai~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~  165 (450)
                      .++++.+|+++    +.       +++++|+|   |++|+++++.+     ++++||+|+++.|+|.++...+.     .
T Consensus       141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G---~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~-----~  212 (533)
T 3f6t_A          141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEG---GTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE-----L  212 (533)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEH---HHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG-----G
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcceEEEECC---HHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH-----H
Confidence            45566666554    32       57899999   99999999998     78899999999999999876653     3


Q ss_pred             cCeeEEEeCCC---------CHHHHHHhhhcCCceEEEEecCCCCcccccCHH---HHHHHHH-hcCCEEEEeCCCCCCC
Q 013079          166 CNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFSPLV  232 (450)
Q Consensus       166 ~g~~v~~v~~~---------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~---~I~~la~-~~gi~livD~~~~~~~  232 (450)
                      .|.++.+++.+         |+++|++++ ++++++|++++|+||||.+.+.+   +|+++|+ ++|+++|+|++|+.+.
T Consensus       213 ~g~~~~~v~~~~~~~~~~~~d~~~l~~~l-~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~  291 (533)
T 3f6t_A          213 KDYELVEVDLHSYEKNDWEIEPNEIEKLK-DPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFV  291 (533)
T ss_dssp             GGSEEEEECCCEETTTTSEECHHHHHHHS-CTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGS
T ss_pred             cCCeEEEEEecCCcccCCCCCHHHHHHHh-CCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccc
Confidence            56777777653         899999999 78999999999999999998766   8888888 6899999999996655


Q ss_pred             CCccCC-----CCeEEEeCCCCccccCccceEEEEEcCHH
Q 013079          233 LSPARL-----GADVVVHSISKFISGGADIIAGAVCGPAN  267 (450)
Q Consensus       233 ~~~~~~-----g~di~~~S~sK~~g~~g~~igG~l~~~~~  267 (450)
                      .....+     +.+++++|+||.+|++|+|+ ||++++++
T Consensus       292 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~~~~~  330 (533)
T 3f6t_A          292 PNFKSIYSVVPYNTMLVYSYSKLFGCTGWRL-GVIALNEK  330 (533)
T ss_dssp             TTCCCHHHHSGGGEEEEEESHHHHTCGGGCE-EEEEEESS
T ss_pred             cCccCHhhcCCCCEEEEecCcccCCCcccce-EEEEECcH
Confidence            433222     46799999999999999998 89887654

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.95  E-value=7e-26  Score=221.67  Aligned_cols=262  Identities=16%  Similarity=0.164  Sum_probs=192.1

Q ss_pred             hHHHHHHHHHHHhC---C--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079          100 TVLNLSRQMAALEG---T--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus       100 ~~~~l~~~iA~l~g---~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ...++++.||++++   .  +.+++|+|   +++++++++.++   ||+|+++ |+|+++...+.     ..|.++..++
T Consensus        57 ~~~~lr~~la~~~~~~~~~~~~v~~~~G---~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~-----~~g~~~~~v~  124 (335)
T 1uu1_A           57 PDEELIEKILSYLDTDFLSKNNVSVGNG---ADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAK-----AVGAKFLEVP  124 (335)
T ss_dssp             SCHHHHHHHHHHHTCSSCCGGGEEEESS---HHHHHHHHHHHS---SEEEECS-SSCHHHHHHHH-----HHTCEEEECC
T ss_pred             chHHHHHHHHHHcCCCCCCHHHEEEcCC---hHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHH-----HcCCeEEEec
Confidence            47889999999998   3  57999999   999999999987   8999999 99999887764     2577888877


Q ss_pred             CC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC-Cc----cCCCCeEEE
Q 013079          175 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL-SP----ARLGADVVV  244 (450)
Q Consensus       175 ~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~-~~----~~~g~di~~  244 (450)
                      .+     |++++      +++++|++++|+||||.+.+.+++.++++..| ++|+|++|..+.. ..    ...+.++++
T Consensus       125 ~~~~~~~d~~~l------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~  197 (335)
T 1uu1_A          125 LTKDLRIPEVNV------GEGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVI  197 (335)
T ss_dssp             CCTTSCCCCCCC------CTTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEE
T ss_pred             cCCCCCCCHHHc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEE
Confidence            54     33332      47899999999999999999999999999889 9999999943321 11    123678999


Q ss_pred             eCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          245 HSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      .|+||.+|++|.|+ ||+++++++++.+......   ...+.+.+.++..++...+++....+++.++++++.+.|++++
T Consensus       198 ~s~sK~~g~~G~r~-G~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g  273 (335)
T 1uu1_A          198 RTFSKAFSLAAQRV-GYVVASEKFIDAYNRVRLP---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG  273 (335)
T ss_dssp             EESTTTTTCGGGCC-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecchhhcCCcccCe-EEEEeCHHHHHHHHHhcCC---CCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999899998 9999999998888765541   2333344444444443333456666778889999999998875


Q ss_pred             CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079          325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN  404 (450)
Q Consensus       325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~  404 (450)
                      ..+ .|.                   .|+++++.++. .....+.+.|...   | +.++.                   
T Consensus       274 ~~~-~~~-------------------~~~~~~~~~~~-~~~~~~~~~l~~~---g-i~v~~-------------------  309 (335)
T 1uu1_A          274 YRI-TDS-------------------RGNFVFVFMEK-EEKERLLEHLRTK---N-VAVRS-------------------  309 (335)
T ss_dssp             CCB-CCC-------------------CSSEEEEECCT-HHHHHHHHHHHHH---T-EEEEE-------------------
T ss_pred             cEE-cCC-------------------CCeEEEEECCC-CCHHHHHHHHHHC---C-EEEEE-------------------
Confidence            443 232                   35688999886 3356677776542   3 33221                   


Q ss_pred             HHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          405 AEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       405 ~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                               .++.||||++ .  . +.++.+.++|++
T Consensus       310 ---------~~~~iRis~~-~--~-~~i~~~~~~l~~  333 (335)
T 1uu1_A          310 ---------FREGVRITIG-K--R-EENDMILRELEV  333 (335)
T ss_dssp             ---------ETTEEEEECC-C--H-HHHHHHHHHHHC
T ss_pred             ---------CCCeEEEEeC-C--H-HHHHHHHHHHHh
Confidence                     1468999999 5  2 336666666554

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.95  E-value=3e-26  Score=224.82  Aligned_cols=287  Identities=16%  Similarity=0.155  Sum_probs=193.7

Q ss_pred             hhHHHHHHHHHHHhCC----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           99 PTVLNLSRQMAALEGT----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      +..+++++.+|+++|.    +.+++|+|   |++|+++++.++++  |+|+++.++|+++ ... .... ..|.++.+++
T Consensus        33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g---~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~~~-~~~~-~~g~~~~~v~  104 (353)
T 2yrr_A           33 RVNRAIQERLAALFDPGEGALVAALAGS---GSLGMEAGLANLDR--GPVLVLVNGAFSQ-RVA-EMAA-LHGLDPEVLD  104 (353)
T ss_dssp             HHHHHHHHHHHHHHCCCTTCEEEEESSC---HHHHHHHHHHTCSC--CCEEEEECSHHHH-HHH-HHHH-HTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEcCC---cHHHHHHHHHHhcC--CcEEEEcCCCchH-HHH-HHHH-HcCCceEEEe
Confidence            4578999999999997    35899999   99999999998876  8999999999986 221 1112 2578888877


Q ss_pred             CC-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC--CCCCCccCCCCeEEEeC
Q 013079          175 IS-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PLVLSPARLGADVVVHS  246 (450)
Q Consensus       175 ~~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~--~~~~~~~~~g~di~~~S  246 (450)
                      .+     |+++|++++ ++ ++++|++++++||||.+.|+++|.++|+++|+++|+|++|+  ....+...+++|+++.|
T Consensus       105 ~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s  183 (353)
T 2yrr_A          105 FPPGEPVDPEAVARAL-KRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTG  183 (353)
T ss_dssp             CCTTSCCCHHHHHHHH-HHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECC
T ss_pred             CCCCCCCCHHHHHHHH-HhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEec
Confidence            53     899999999 55 89999999999999999999999999999999999999983  22222233478999999


Q ss_pred             CCCcc-ccCccceEEEEEcCHHHHHHHHH----------Hhh--hhhhccCCCchHH--H-HHHHHccC--CcHHHHHHH
Q 013079          247 ISKFI-SGGADIIAGAVCGPANLVNSMMD----------LHQ--GALMLLGPTMNPK--V-AFELSERI--PHLGLRMKE  308 (450)
Q Consensus       247 ~sK~~-g~~g~~igG~l~~~~~~~~~l~~----------~~~--~~~~~~g~~~~~~--~-a~~~~~~~--~~l~~~~~~  308 (450)
                      +||++ +++|  + |+++.++++++.+..          ...  ......+ +.+..  . +..++...  ..+....++
T Consensus       184 ~~K~~~~~~g--~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~al~~~~~~~~~~~~~~  259 (353)
T 2yrr_A          184 SQKCLSAPPG--L-APIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHH-TTPVLLHYALLEALDLVLEEGVAARERR  259 (353)
T ss_dssp             TTSTTCCCSS--C-EEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSS-CCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CcccccCCCc--e-EEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCC-CCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99965 4455  5 999999888766530          000  0011222 22222  1 11222211  124556677


Q ss_pred             HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccc
Q 013079          309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYY  388 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~  388 (450)
                      +.++++++.+.|++.+.++..|.     .            ..+++++|.++.......+.+.|...   | +.+..|..
T Consensus       260 ~~~~~~~l~~~L~~~g~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~l~~~---g-i~v~~g~~  318 (353)
T 2yrr_A          260 AREVYAWVLEELKARGFRPYPKA-----S------------PLPTVLVVRPPEGVDADRLVRALYAE---G-VAVAGGIG  318 (353)
T ss_dssp             HHHHHHHHHHHHHHTTCEESCSS-----S------------BCTTEEEEECCTTCCHHHHHHHHHHT---T-EECEECCG
T ss_pred             HHHHHHHHHHHHHHCCCccccCc-----c------------CCCeEEEEECCCCCCHHHHHHHHHHC---C-EEEeCCcc
Confidence            88899999999988765543321     0            14557889986222245677776642   3 56665542


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          389 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       389 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      +                       ..++.+|||++...+.+++.+.+.++|.++
T Consensus       319 ~-----------------------~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~  349 (353)
T 2yrr_A          319 P-----------------------TRGQVLRLGLMGEGARREAYQAFLKALDRA  349 (353)
T ss_dssp             G-----------------------GTTTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred             c-----------------------cCCCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence            1                       014789999951333333332555555544

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.95  E-value=9.7e-26  Score=223.69  Aligned_cols=291  Identities=13%  Similarity=0.095  Sum_probs=199.8

Q ss_pred             ChhHHHHHHHHHHHhCCC---eEE-EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           98 NPTVLNLSRQMAALEGTE---AAY-CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~---~~~-~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      .+..+++++.+++++|.+   .++ +|+|   |++|+++++++++++||+|+++.+.|.+....  .... ..|.++..+
T Consensus        51 ~~~~~~~~~~la~~~g~~~~~~~i~~~~g---gt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~--~~~~-~~g~~~~~v  124 (376)
T 3f0h_A           51 SSTMLENEKFMLEYAKAPEGSKAVFMTCS---STGSMEAVVMNCFTKKDKVLVIDGGSFGHRFV--QLCE-IHEIPYVAL  124 (376)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTCEEEEESSC---HHHHHHHHHHHHCCTTCCEEEEESSHHHHHHH--HHHH-HTTCCEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCC---hhHHHHHHHHhccCCCCeEEEEeCChhhHHHH--HHHH-HcCCceEEE
Confidence            366789999999999875   444 5899   99999999999999999999999877764322  1111 257777777


Q ss_pred             CCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC--CCCccCCCCeEEEeC
Q 013079          174 DIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL--VLSPARLGADVVVHS  246 (450)
Q Consensus       174 ~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~--~~~~~~~g~di~~~S  246 (450)
                      +.+     |+++|++++ ++++++|++++|+||||.+.|+++|.++|+++|+++|+|++++..  ..+....++|+++.|
T Consensus       125 ~~~~~~~~d~~~l~~~~-~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s  203 (376)
T 3f0h_A          125 KLEHGKKLTKEKLYEYD-NQNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITG  203 (376)
T ss_dssp             ECCTTCCCCHHHHHTTT-TSCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEE
T ss_pred             eCCCCCCCCHHHHHHhh-ccCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEec
Confidence            643     899999988 889999999999999999999999999999999999999998433  233334578999999


Q ss_pred             CCCccc-cCccceEEEEEcCHHHHHHHHHHhhhh-----------h--hccCCCchH---HHHHHHHccC--C-cHHHHH
Q 013079          247 ISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGA-----------L--MLLGPTMNP---KVAFELSERI--P-HLGLRM  306 (450)
Q Consensus       247 ~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~-----------~--~~~g~~~~~---~~a~~~~~~~--~-~l~~~~  306 (450)
                      +||+++ ++|  + |+++.++++++.+.......           .  .....++..   .++..++..+  . .+....
T Consensus       204 ~~K~l~~~~G--~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~  280 (376)
T 3f0h_A          204 SQKVLACPPG--I-SVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEV  280 (376)
T ss_dssp             TTTTTCCCSS--C-EEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CcccccCCCc--e-EEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999 566  4 88889998887775321100           0  001122222   1121222211  1 245566


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      ++..++++++.+.|++++..+..+.                  ..+.++.+..++.+ ...+.+.|...  +| +.++.|
T Consensus       281 ~~~~~~~~~l~~~L~~~~~~~~~~~------------------~~~~~~~~~~~~~~-~~~l~~~l~~~--~g-i~v~~g  338 (376)
T 3f0h_A          281 ARIASQAADFRAKIKDLPFELVSES------------------PANGVTSVHPTTAN-AYDIFLKLKDE--YG-IWICPN  338 (376)
T ss_dssp             HHHHHHHHHHHHHTTTSSEEECCSS------------------BBTTEEEEEESSSC-HHHHHHHHHHH--SS-EECEEC
T ss_pred             HHHHHHHHHHHHHHHHcCCccCccc------------------cCceEEEEeCCCCC-HHHHHHHHHHh--CC-EEEecC
Confidence            6678888889888887765443221                  12335555544322 45666666542  23 455544


Q ss_pred             cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      ..                       ...++.||||++ ...+++.++.+.++|.++.+
T Consensus       339 ~~-----------------------~~~~~~lRis~~-~~~t~e~i~~~~~~l~~~l~  372 (376)
T 3f0h_A          339 GG-----------------------EMKDTIFRVGHI-GALTHEDNTTLVNAFKDLQK  372 (376)
T ss_dssp             CG-----------------------GGTTTCEEEECC-SSCCHHHHHHHHHHHHHHHH
T ss_pred             cc-----------------------ccCCCEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence            11                       012578999999 77777778888777776543

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.95  E-value=3.5e-26  Score=228.56  Aligned_cols=286  Identities=12%  Similarity=0.121  Sum_probs=199.2

Q ss_pred             CCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccC----------CCEEEEeCCCchhHHHHHHHhCCC
Q 013079           95 RHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSS----------GGHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~----------gd~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      .+..+..+++++.+++++|.+.++||+|   |++|++++++.+..+          +|+|++..+.|++....+......
T Consensus        74 ~~~~~~~~~l~~~la~~~g~~~v~~~~~---gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~  150 (392)
T 3ruy_A           74 AFHSDQLGPWYEKVAKLTNKEMVLPMNT---GAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSN  150 (392)
T ss_dssp             TSEETTHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSC
T ss_pred             ccCCHHHHHHHHHHHHhcCCCEEEEeCc---HHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCC
Confidence            3557889999999999999999999999   999999999876543          679999999998765444221110


Q ss_pred             --------ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          165 --------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       165 --------~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                              .....+..++.+|+++|++++ ++++++|++++++||||.+.|    +++|.++|+++|+++|+|++|.++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~  229 (392)
T 3ruy_A          151 EEYKRGFGPMLPGIIVIPYGDLEALKAAI-TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLG  229 (392)
T ss_dssp             TTTTTTCCSCCSSEEEECTTCHHHHHHHC-CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTT
T ss_pred             hhhccccCCCCCCCeeeCcccHHHHHHHh-ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCC
Confidence                    001235666777999999999 789999999999999999998    9999999999999999999996553


Q ss_pred             CC-------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHH
Q 013079          233 LS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGL  304 (450)
Q Consensus       233 ~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~  304 (450)
                      ..       ......|+++  +||.+++ | .|+ |+++.++++++.+.....+ ....++.+.+.++..++...+. +.
T Consensus       230 ~~g~~~~~~~~~~~~d~~~--~SK~l~g-G~~~~-G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~~-~~  303 (392)
T 3ruy_A          230 RTGKVFACDWDNVTPDMYI--LGKALGG-GVFPI-SCAAANRDILGVFEPGSHG-STFGGNPLACAVSIAALEVLEE-EK  303 (392)
T ss_dssp             TTSSSSGGGGGTCCCSEEE--ECGGGGT-TTSCC-EEEEECHHHHTTCCTTSSC-CSSTTCHHHHHHHHHHHHHHHH-TT
T ss_pred             ccccchhhhccCCCCCEEE--EchhhhC-Chhhh-EEEEECHHHHhhhccCCcC-CCCCCCHHHHHHHHHHHHHHHh-hh
Confidence            21       1122467775  6799885 6 787 9999998887766443321 1122222333333333222211 33


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCe-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079          305 RMKEHCHRALIFARRMKKLGLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV  383 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~~~~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v  383 (450)
                      ..+++.++++++.+.|++++.. +...                  .+.|+++++.++.  ....+.+.|...   | +.+
T Consensus       304 ~~~~~~~~~~~l~~~L~~~~~~~~~~~------------------~~~g~~~~~~~~~--~~~~l~~~l~~~---g-i~v  359 (392)
T 3ruy_A          304 LTERSLQLGEKLVGQLKEIDNPMITEV------------------RGKGLFIGIELNE--PARPYCEQLKAA---G-LLC  359 (392)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTEEEE------------------EEETTEEEEEESS--CSHHHHHHHHTT---T-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceEE------------------EeeeeEEEEEEcc--hHHHHHHHHHHC---C-cEE
Confidence            4556788888999999876421 1100                  1346789998875  355677777642   3 444


Q ss_pred             ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      +.|+                           ++.||||++ ...+++.++.+.++|.++
T Consensus       360 ~~~~---------------------------~~~iRi~~~-~~~~~~~i~~~~~~l~~~  390 (392)
T 3ruy_A          360 KETH---------------------------ENVIRIAPP-LVISEEDLEWAFQKIKAV  390 (392)
T ss_dssp             CCBT---------------------------TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred             ecCC---------------------------CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence            4321                           478999988 777777777777777654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.94  E-value=3.7e-26  Score=229.19  Aligned_cols=280  Identities=11%  Similarity=0.111  Sum_probs=184.8

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHH--hC---CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeC
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL--EG---TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAAR  148 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l--~g---~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~  148 (450)
                      +++.+.++.. +++...+.|+.  .+...++++.||++  .|   .+.+++|+|   +++++++++ .++.+||+|+++.
T Consensus        53 ~a~~~~~~~~-~~~~~~~~y~~--~~g~~~lr~~la~~l~~g~~~~~~v~~~~G---~~~al~~~~-~~~~~gd~Vl~~~  125 (400)
T 3asa_A           53 EAFASSIARL-SSPTTCRGYGP--DFGLPALRQKLSEDFYRGFVDAKEIFISDG---AKVDLFRLL-SFFGPNQTVAIQD  125 (400)
T ss_dssp             HHHHHHHHHH-TSSSCCCCCCC--TTCCHHHHHHHHHTTSTTSSCGGGEEEESC---HHHHHHHHH-HHHCSSCEEEEEE
T ss_pred             HHHHHHHhcc-cccccccCCCC--CCCCHHHHHHHHHHHHcCCCCHHHEEEccC---hHHHHHHHH-HHcCCCCEEEECC
Confidence            5555555432 22223344542  23467899999998  46   467999999   999999865 4568899999999


Q ss_pred             CCchhHHHHHHHhCCCccCee-EEEeCCCCHHHHHHhhhc-CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEE
Q 013079          149 TLYGGTHALLTHFFPRACNIT-TTFVDISDHEMVNSAIVQ-GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVV  223 (450)
Q Consensus       149 ~~y~~~~~~~~~~~~~~~g~~-v~~v~~~d~~~l~~ai~~-~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~li  223 (450)
                      |+|+++...+.     ..|.+ +.+++.++.+.+...+.. +++++|++++|+||||.+.+   +++|+++|+++|+++|
T Consensus       126 p~y~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li  200 (400)
T 3asa_A          126 PSYPAYLDIAR-----LTGAKEIIALPCLQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILIL  200 (400)
T ss_dssp             SCCHHHHHHHH-----HTTCSEEEEEECCGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCcHHHHHHHH-----HcCCcceEecccchhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence            99999887764     25766 777765421111111211 57899999999999999987   6678999999999999


Q ss_pred             EeCCCCCCCC------CccCC----CCeEEEeCCCCccccCccceEEEEEcCHHH-------HHHHHHHhhhhhhccCCC
Q 013079          224 VDNTFSPLVL------SPARL----GADVVVHSISKFISGGADIIAGAVCGPANL-------VNSMMDLHQGALMLLGPT  286 (450)
Q Consensus       224 vD~~~~~~~~------~~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~-------~~~l~~~~~~~~~~~g~~  286 (450)
                      +|++|..+..      +...+    +.++++.|+||.+|++|+|+ ||+++++++       ++.+...........++.
T Consensus       201 ~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Glri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (400)
T 3asa_A          201 FDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRL-GWTVIPQELTYADGHFVIQDWERFLSTTFNGASI  279 (400)
T ss_dssp             EECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCC-EEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCH
T ss_pred             EEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchhe-eEEeeChhhccchhhhHHHHHHHHhccCccCCCh
Confidence            9999964432      12222    25699999999999999998 999988877       666543222111112334


Q ss_pred             chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-eCCHHHH
Q 013079          287 MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-METEEKA  365 (450)
Q Consensus       287 ~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-l~~~~~~  365 (450)
                      +.+.++..++... ++....+++.++++++.+.|++.+..+..|.                   .|.++++. ++.....
T Consensus       280 ~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~~~~~~~~~~~~  339 (400)
T 3asa_A          280 PAQEAGVAGLSIL-PQLEAIHYYRENSDLLRKALLATGFEVFGGE-------------------HAPYLWVKPTQANISD  339 (400)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHTTCEEEECS-------------------SSSEEEEECCCTTCCT
T ss_pred             HHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCC-------------------CceEEEEeccCCCCCH
Confidence            4444444444333 4555667778889999999998876654332                   35689999 7632112


Q ss_pred             HHHHHHhhcccccccccccccccc
Q 013079          366 NRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       366 ~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      ..+...|..  ..| +.+..|+.+
T Consensus       340 ~~~~~~l~~--~~g-v~v~~g~~f  360 (400)
T 3asa_A          340 RDLFDFFLR--EYH-IAITPGIGF  360 (400)
T ss_dssp             TTHHHHHHH--HHS-EECEEGGGG
T ss_pred             HHHHHHHHH--hCC-EEEeChhHh
Confidence            345444432  123 566666443

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.94  E-value=1.6e-25  Score=222.96  Aligned_cols=310  Identities=15%  Similarity=0.145  Sum_probs=216.8

Q ss_pred             ChhHHHHHHHH-HHHhC-CCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           98 NPTVLNLSRQM-AALEG-TEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        98 ~~~~~~l~~~i-A~l~g-~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .|.++++++.+ |+++| .+.+++|+|   ||+|+++++.++ +++||+|+++.++|.++...+.     ..|.++++++
T Consensus        35 ~~~~~~l~~~~~a~~~g~~~~~v~~~s---gt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~-----~~G~~~~~v~  106 (377)
T 3ju7_A           35 GPINQRFEQTIMSGFFQNRGAVTTVAN---ATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAI-----WCGLEPYFID  106 (377)
T ss_dssp             CHHHHHHHHHHHHHTSTTCSEEEEESC---HHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHH-----HTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHhCCCCeEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH-----HcCCEEEEEe
Confidence            47899999999 99999 889999999   999999999998 8999999999999999988775     3688999987


Q ss_pred             CC------CHHHHHHhhhcCC--ceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC---CeE
Q 013079          175 IS------DHEMVNSAIVQGR--TKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG---ADV  242 (450)
Q Consensus       175 ~~------d~~~l~~ai~~~~--t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g---~di  242 (450)
                      .+      |++++++++.+++  |++|+   ++||+|.+.|+++|.++|+ +|+++|+|++|. +..+....+|   .|+
T Consensus       107 ~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~  182 (377)
T 3ju7_A          107 ISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGM  182 (377)
T ss_dssp             BCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSE
T ss_pred             cCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcE
Confidence            64      8999999883445  88887   6789999999999999999 999999999983 2222222232   466


Q ss_pred             EEeC--CCCccccCccceEEEEEc-CHHHHHHHHHHhhhhh--------hccCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079          243 VVHS--ISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL--------MLLGPTMNPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       243 ~~~S--~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~--------~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                      .+.|  .+|++++ |.  ||+++. ++++.+.++..+.+..        ...+..+....++..+..++.+..+.++.++
T Consensus       183 ~~~S~~~~K~l~~-g~--gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~  259 (377)
T 3ju7_A          183 IIYSFHATKPFGI-GE--GGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTR  259 (377)
T ss_dssp             EEEECBTTSSSCC-BS--CEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             EEEECCCCCcCCC-CC--cEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655  5799996 52  577754 6778888877655221        0112335566666666667888888899999


Q ss_pred             HHHHHHHHHHhCCC-ee-eCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccc--
Q 013079          312 RALIFARRMKKLGL-KV-LYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGY--  387 (450)
Q Consensus       312 ~~~~l~~~L~~~~~-~v-~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~--  387 (450)
                      +++++.+.|++++. .+ ..|....+.              .-.++.+.+++....+.+++.|...+    |.++.+.  
T Consensus       260 ~~~~~~~~L~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~~g----I~~~~~~~~  321 (377)
T 3ju7_A          260 ISEWYKQLLQSNGLMKKGWQLQKTEAV--------------IQQFMPILCPEEVRNKQVIEDLKKQK----IEARLYFSP  321 (377)
T ss_dssp             HHHHHHHHHHHTTTTTTTCBCCCCSCB--------------CCSSEEEECCTTSCHHHHHHHHHTTT----BCCBCTTSS
T ss_pred             HHHHHHHHhcCCCCccccccCCCCCcc--------------eEEEEEEEeCChhhHHHHHHHHHHCC----CceecccCC
Confidence            99999999998763 11 112111111              11245666664323567888887643    6777765  


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      .|.....-.+.....++..+...    .+.|||+++ ...+++.++.+.++|.++...
T Consensus       322 ~~~~~~~~~~~~~~~~p~~~~~~----~~~l~lp~~-~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          322 SCHQQVLFRNYKSTDLTRTNKIA----KRIVSLPLW-EGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             CGGGSGGGTTSCBSCCHHHHHHH----HHEEEECCC-TTCCHHHHHHHHHHHTC----
T ss_pred             ccccchhhhcCCCCCCHHHHHHH----hCEEECCCC-CCCCHHHHHHHHHHHHHHHhc
Confidence            33332111111122333333322    578999999 888899999998888776543

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.94  E-value=1.1e-25  Score=227.47  Aligned_cols=288  Identities=13%  Similarity=0.113  Sum_probs=194.4

Q ss_pred             HHHHHHHHHHHhCC--CeEEEecChHHHHHHH--HHHHHHhccC------------CCEEEEeCCCchhHHHHHHHhCCC
Q 013079          101 VLNLSRQMAALEGT--EAAYCTASDKAGMSAI--SSVLMQLCSS------------GGHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus       101 ~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai--~~al~~l~~~------------gd~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      ..++|+.||++++.  +++++|+|   +++++  .+++..+..+            +|+|+++.|+|+++...+.     
T Consensus        78 ~~~lr~~ia~~~~~~~~~i~~t~G---~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~-----  149 (422)
T 3d6k_A           78 IADIRELWAEALGLPADLVVAQDG---SSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE-----  149 (422)
T ss_dssp             CHHHHHHHHHHHTCCGGGEEECSS---CHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-----
T ss_pred             CHHHHHHHHHHhCCChhHEEEecc---hHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHH-----
Confidence            67899999999986  46899999   99997  6666777665            3479999999999988775     


Q ss_pred             ccCeeEEEeCCC----CHHHHHHhhhcCCceEEE-EecCCCCcccccCHH---HHHHHHH-hcCCEEEEeCCCC--CCCC
Q 013079          165 ACNITTTFVDIS----DHEMVNSAIVQGRTKVLY-FESISNPTLAVANIP---ELSRLAH-DKGVTVVVDNTFS--PLVL  233 (450)
Q Consensus       165 ~~g~~v~~v~~~----d~~~l~~ai~~~~t~lv~-i~~~~NptG~v~~l~---~I~~la~-~~gi~livD~~~~--~~~~  233 (450)
                      ..|.++..++.+    |+++|++++...++++|+ +++||||||.+.+.+   +|+++|+ ++|+++|+|++|.  .+..
T Consensus       150 ~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~  229 (422)
T 3d6k_A          150 HFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSD  229 (422)
T ss_dssp             HHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSS
T ss_pred             HcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCC
Confidence            257777777653    899999999324789988 689999999998866   7888888 8999999999995  3432


Q ss_pred             C-----cc--------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-
Q 013079          234 S-----PA--------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-  299 (450)
Q Consensus       234 ~-----~~--------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-  299 (450)
                      .     +.        ..+.++++.|+||+ +++|+|+ ||+++++++++.+....... ....+.+.+.++..++... 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~Glri-G~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~  306 (422)
T 3d6k_A          230 EFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGV-SFFASSKENIEWYASHANVR-GIGPNKLNQLAHAQFFGDVA  306 (422)
T ss_dssp             CCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSC-EEEECCHHHHHHHHHHHHHH-CSCCCHHHHHHHHHHHCSHH
T ss_pred             CCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccce-EEEEeCHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHhCcc
Confidence            1     11        23678999999999 6689998 99999999998887665421 1223444444444444331 


Q ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHh----CCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013079          300 ---PHLGLRMKEHCHRALIFARRMKK----LGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY  371 (450)
Q Consensus       300 ---~~l~~~~~~~~~~~~~l~~~L~~----~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~  371 (450)
                         +++.+..+.+.++++.+.+.|++    ++. .+..|.                   .|.++++.++.. ....+...
T Consensus       307 ~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-------------------~g~~~~~~~~~~-~~~~~~~~  366 (422)
T 3d6k_A          307 GLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPT-------------------GGYFISVDVVPG-TASRVVEL  366 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCS-------------------BSSCEEEEESTT-CHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCC-------------------cceEEEEECCCC-CHHHHHHH
Confidence               22333444566777777777765    232 333332                   466899999843 23455555


Q ss_pred             hhccccccccccccc-cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC---CCHHHHHHHHHHHHHHh
Q 013079          372 LQNYAQFGFMAVSLG-YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL---GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       372 l~~~~~~g~i~vs~G-~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~---~~~~~~i~~l~~al~~~  442 (450)
                      +..   .| +.+..| ..+....                  ...++.||||++ .   ++.++.++.|.+++.++
T Consensus       367 l~~---~g-V~v~~~g~~f~~~~------------------~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~  418 (422)
T 3d6k_A          367 AKE---AG-IALTGAGSSFPLHN------------------DPNNENIRLAPS-LPPVAELEVAMDGFATCVLMA  418 (422)
T ss_dssp             HHH---TT-EECCCTTTTSGGGC------------------CTTSCEEEECCS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHH---CC-eEEEcCccccCCCC------------------CCCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence            554   23 555553 2221100                  012478999999 6   23334444444444443

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.94  E-value=2.5e-25  Score=220.72  Aligned_cols=314  Identities=16%  Similarity=0.230  Sum_probs=215.5

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ..+...++++.+|++++.+.+++|+|   |++|+.+++.++ +++||+|+++.++|+++...+.     ..|.++.+++.
T Consensus        36 ~~~~~~~l~~~la~~~~~~~~~~~~~---gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~-----~~g~~~~~~~~  107 (374)
T 3uwc_A           36 LGAELEKFEKRFAALHNAPHAIGVGT---GTDALAMSFKMLNIGAGDEVITCANTFIASVGAIV-----QAGATPVLVDS  107 (374)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECB
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEec
Confidence            46789999999999999999999999   999999999999 8999999999999999987775     36888988887


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCccCCC--CeEEEeCC
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVHSI  247 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~~~g--~di~~~S~  247 (450)
                      +     |++++++++ ++++++|+   |+||||.+.|+++|.++|+++|+++|+|++|+.. .++....+  .|+++.|+
T Consensus       108 ~~~~~~d~~~l~~~~-~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~  183 (374)
T 3uwc_A          108 ENGYVIDPEKIEAAI-TDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSL  183 (374)
T ss_dssp             CTTSSBCGGGTGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEEC
T ss_pred             CCCCCcCHHHHHHhC-CCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeC
Confidence            5     899999999 77888887   8999999999999999999999999999998432 23333333  79999997


Q ss_pred             C--CccccCccceEEEEEc-CHHHHHHHHHHhhhhhh------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079          248 S--KFISGGADIIAGAVCG-PANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       248 s--K~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l  316 (450)
                      |  |+++++|.  +|+++. ++++.+.+...+.....      ..+  ..+....+.......+.+....++..++++++
T Consensus       184 ~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l  261 (374)
T 3uwc_A          184 HPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLY  261 (374)
T ss_dssp             SSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7  99997564  488775 45677777665431110      011  12344444444445566677777778888888


Q ss_pred             HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccc
Q 013079          317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG  396 (450)
Q Consensus       317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~  396 (450)
                      .+.|++.+..+..|..+....            ..-..+.+..++   ...+.+.|...   | +.++.|....+...+.
T Consensus       262 ~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~---~~~l~~~L~~~---g-i~v~~~~~~~~~~~~~  322 (374)
T 3uwc_A          262 DQSFVDLSEFIDVPVRREGVY------------HVFHIYVLRVKY---RDQLFQYLKDN---G-IEVKIHYPIAMHLQPA  322 (374)
T ss_dssp             HHHTGGGTTTEECCCCCTTEE------------CCCSSEEEEETT---HHHHHHHHHHT---T-BCCBCSCSSCGGGSGG
T ss_pred             HHHhccCCCeEEeccCCCCCc------------eeeEEEEEEcCC---HHHHHHHHHHC---C-CccccCCCCccccChh
Confidence            888887652022232111000            001234444443   44566666542   3 5666664222211111


Q ss_pred             ccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCC
Q 013079          397 SST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGVF  448 (450)
Q Consensus       397 ~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~~  448 (450)
                      ...    ...++.....    ..+.||||++ ...+++.++.+.++|.++.+..+|
T Consensus       323 ~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~t~edi~~~~~~l~~~l~~~~~  373 (374)
T 3uwc_A          323 AKSLGYQQGDFPMAEKH----GEAVITLPAH-PYLTEEEINYIIKKVREFYLEKHY  373 (374)
T ss_dssp             GGGGCCCTTSCHHHHHH----HHHEEEECCC-TTSCHHHHHHHHHHHHHHHHTTTT
T ss_pred             hhhcCCccCCCccHHHH----HhCEEEccCC-CCCCHHHHHHHHHHHHHHHHhhcC
Confidence            110    0011111111    1368999999 988899999999999887665544

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.94  E-value=5.4e-26  Score=223.96  Aligned_cols=285  Identities=9%  Similarity=0.034  Sum_probs=198.4

Q ss_pred             hhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           99 PTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      +..+++++.+++++|.   +.+++|+|   |++|+++++.+++++ +.+++..+.|.....   .... ..|.++++++.
T Consensus        43 ~~~~~~~~~la~~~g~~~~~~v~~~~g---~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~---~~~~-~~g~~~~~v~~  114 (362)
T 3ffr_A           43 EVYKTASDNLKTLLELPSNYEVLFLAS---ATEIWERIIQNCVEK-KSFHCVNGSFSKRFY---EFAG-ELGREAYKEEA  114 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEESC---HHHHHHHHHHHHCSS-EEEEEECSHHHHHHH---HHHH-HTTCEEEEEEC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCC---chHHHHHHHHhccCC-cEEEEcCcHHHHHHH---HHHH-HhCCCeEEEec
Confidence            5678999999999976   35899999   999999999999877 444445444441211   1112 25888888875


Q ss_pred             C-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc-CCEEEEeCCCCCCCCCccCC-CCeEEEeCCC
Q 013079          176 S-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK-GVTVVVDNTFSPLVLSPARL-GADVVVHSIS  248 (450)
Q Consensus       176 ~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~-gi~livD~~~~~~~~~~~~~-g~di~~~S~s  248 (450)
                      +     |+++|+  + +++|++|++++|+||||.+.|+++|.++|+++ |+++|+|++|..... +..+ .+|+++.|+|
T Consensus       115 ~~~~~~d~~~l~--~-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~-~~~~~~~d~~~~s~~  190 (362)
T 3ffr_A          115 AFGKGFYPADIT--V-PADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYP-KFDWTKIDSVFFSVQ  190 (362)
T ss_dssp             CTTCCCCGGGCC--C-CTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSS-CCCTTSCSEEEEETT
T ss_pred             CCCCCCCHHHHh--c-cCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCc-ccChhHCcEEEEecc
Confidence            4     778877  5 78999999999999999999999999999999 999999999843221 1122 2899999999


Q ss_pred             Cccc-cCccceEEEEEcCHHHHHHHHHHhhhhh-----------------hccCCCchHH---HHHHHHccC--CcHHHH
Q 013079          249 KFIS-GGADIIAGAVCGPANLVNSMMDLHQGAL-----------------MLLGPTMNPK---VAFELSERI--PHLGLR  305 (450)
Q Consensus       249 K~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~-----------------~~~g~~~~~~---~a~~~~~~~--~~l~~~  305 (450)
                      |+++ ++|  + |+++.++++++.+.....+..                 .....+.+..   ++..++..+  ..+..+
T Consensus       191 K~~~~~~G--~-g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~  267 (362)
T 3ffr_A          191 KCFGLPAG--L-GVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGI  267 (362)
T ss_dssp             STTCCCSC--C-EEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cccCCCCc--e-EEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHH
Confidence            9999 666  4 888888888877765443100                 0001122211   121222211  125667


Q ss_pred             HHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013079          306 MKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS  384 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs  384 (450)
                      .+++.++++++.+.|+++ +.++..|.    +.           ...+.+++|.+++  ....+.+.|...   | +.++
T Consensus       268 ~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~-----------~~~~~~~~~~~~~--~~~~~~~~l~~~---g-i~~~  326 (362)
T 3ffr_A          268 RKQTEEKAALINTYIESSKVFSFGVED----AK-----------LRSMTTIVANTTM--LPGEINKILEPF---D-MAVG  326 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSEEESSSC----GG-----------GBCSSEEEEEESS--CHHHHHHHHGGG---T-EEEE
T ss_pred             HHHHHHHHHHHHHHHHHccCceeccCC----hh-----------hcCCceEEEecCC--CHHHHHHHHHHC---C-eEEe
Confidence            777889999999999998 44543322    00           0245689999986  467788888753   3 5655


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .|..+                       ..++.||||++ ..++++.++.+.++|+++.
T Consensus       327 ~g~~~-----------------------~~~~~iRis~~-~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          327 AGYGS-----------------------KKETQIRIANF-PAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             ECSGG-----------------------GTTTEEEEECC-TTSCHHHHHHHHHHHHHHT
T ss_pred             cCccc-----------------------cCCCEEEEECC-CCCCHHHHHHHHHHHHHHh
Confidence            55221                       12578999999 8888999999999988753

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.94  E-value=3.1e-25  Score=221.79  Aligned_cols=242  Identities=11%  Similarity=0.049  Sum_probs=169.7

Q ss_pred             CccccCCH-HHHHH-hhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC--------CC--eEEEecChHHHHHHHHHH
Q 013079           66 ATFTVMEP-ETMRR-MFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TE--AAYCTASDKAGMSAISSV  133 (450)
Q Consensus        66 tt~~~~~~-~~~~~-~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g--------~~--~~~~tsg~~~gt~ai~~a  133 (450)
                      +++..+.+ +++.+ .+...     ..+.|+.  .....++++.+|++++        .+  .+++|+|   |++|++++
T Consensus        42 ~~~~~~~v~~a~~~~~~~~~-----~~~~y~~--~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g---~~~a~~~~  111 (397)
T 3fsl_A           42 IIPQLQAVAEAEARLNAQPH-----GASLYLP--MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLG---GSGALKVG  111 (397)
T ss_dssp             CCCCCHHHHHHHHHHHHSCC-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH---HHHHHHHH
T ss_pred             CccCcHHHHHHHHhhccCcc-----ccccCCC--CCchHHHHHHHHHHHhcCCcccccccceEEEEcCC---cHHHHHHH
Confidence            34433443 66666 55431     2234442  2334667778887763        35  7899999   99999999


Q ss_pred             H--HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----C---CHHHHHHhhhc--CCceEEEEecCCCCc
Q 013079          134 L--MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ--GRTKVLYFESISNPT  202 (450)
Q Consensus       134 l--~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----~---d~~~l~~ai~~--~~t~lv~i~~~~Npt  202 (450)
                      +  ..++++||+|+++.|+|+++...+.     ..|.++..++.    +   |++++++++.+  ++++++++++|+|||
T Consensus       112 ~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~npt  186 (397)
T 3fsl_A          112 ADFLKRYFPESGVWVSDPTWENHVAIFA-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPT  186 (397)
T ss_dssp             HHHHHHHCTTCCEEEESSCCHHHHHHHH-----HTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTT
T ss_pred             HHHHHhcCCCCeEEEeCCCchhHHHHHH-----HcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCC
Confidence            5  4567899999999999999988775     36778888876    3   89999999932  678999999999999


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeCCCCccccCccceEEEEEc---C
Q 013079          203 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAVCG---P  265 (450)
Q Consensus       203 G~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~  265 (450)
                      |.+.+   +++|+++|+++|+++|+|++|..+.+..           ...+.++++.|+||.+|++|+|+ ||++.   +
T Consensus       187 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ri-G~~~~~~~~  265 (397)
T 3fsl_A          187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGLSVMCED  265 (397)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCC-EEEEEECSS
T ss_pred             CcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCe-eEEEEecCC
Confidence            99965   5699999999999999999996665431           12257899999999999999999 88853   4


Q ss_pred             HHHHHHHHHHhhhh---hhccCCCchHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          266 ANLVNSMMDLHQGA---LMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       266 ~~~~~~l~~~~~~~---~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      ++++..+.......   .....+...+.++...+..       .+++....+++.++++++.+.|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  333 (397)
T 3fsl_A          266 AEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTE  333 (397)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56665443221101   1122233444444333332       2335556667788999999999876

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.94  E-value=1.8e-26  Score=236.11  Aligned_cols=292  Identities=12%  Similarity=0.097  Sum_probs=198.0

Q ss_pred             hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCC---EEEEeCCCchhHHHHHHHhCCCccCeeE---
Q 013079           99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGG---HVVAARTLYGGTHALLTHFFPRACNITT---  170 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd---~Vi~~~~~y~~~~~~~~~~~~~~~g~~v---  170 (450)
                      ...+++++.+|+++|++  .+++|+|   +++++++++.+++++|+   +|+++.++|++....+...... .|.++   
T Consensus       111 ~~~~~l~~~la~~~g~~~~~v~~t~g---~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~-~G~~~~~~  186 (465)
T 3e9k_A          111 TGDESIVGLMKDIVGANEKEIALMNA---LTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQL-HGLNIEES  186 (465)
T ss_dssp             GTTHHHHGGGHHHHTCCGGGEEECSC---HHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHH-TTCCHHHH
T ss_pred             HhHHHHHHHHHHHcCCCcCCEEEECC---HHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHH-cCCcceee
Confidence            45678999999999974  6899999   99999999999987655   5999999999976654332222 45543   


Q ss_pred             --EEeCCC-----CHHHHHHhhhc--CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCC
Q 013079          171 --TFVDIS-----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLG  239 (450)
Q Consensus       171 --~~v~~~-----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g  239 (450)
                        ..++.+     |+++|++++.+  +++++|++++++||||.+.|+++|.++|+++|+++|+|+++  +....+....+
T Consensus       187 ~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~  266 (465)
T 3e9k_A          187 MRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWG  266 (465)
T ss_dssp             EEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHT
T ss_pred             eEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcC
Confidence              333332     79999999931  68999999999999999999999999999999999999998  33334444568


Q ss_pred             CeEEEeCCCCccc-cCccceEEEEEcCHHHHHHHHHHhhhhh---------------------hccCCCchHHHHHH---
Q 013079          240 ADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQGAL---------------------MLLGPTMNPKVAFE---  294 (450)
Q Consensus       240 ~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~~~---------------------~~~g~~~~~~~a~~---  294 (450)
                      +|+++.|+||+++ +++ .+ |+++.++++.+.+.....++.                     ....++++...+..   
T Consensus       267 ~D~~~~s~~K~l~~gp~-~~-g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~a  344 (465)
T 3e9k_A          267 VDFACWCSYKYLNAGAG-GI-AGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHA  344 (465)
T ss_dssp             CCEEEECSSSTTCCCTT-CC-CEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHH
T ss_pred             CCEEEECcccccccCCC-ce-EEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHH
Confidence            9999999999994 444 35 777777776554421111100                     00011222222211   


Q ss_pred             HHccCC--cHHHHHHHHHHHHHHHHHHHHhC-----------CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          295 LSERIP--HLGLRMKEHCHRALIFARRMKKL-----------GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       295 ~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~-----------~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      ++..+.  .+....++..++++++.+.|+++           +.++..|..   +            .+.|++++|.++.
T Consensus       345 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~---~------------~~~g~~~~~~~~~  409 (465)
T 3e9k_A          345 SLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSH---V------------EERGCQLTITFSV  409 (465)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSS---G------------GGBCSCEEEEECC
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCC---H------------hhcccEEEEEecC
Confidence            221111  24555566788888899999873           335544431   1            1357899999872


Q ss_pred             HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHHH
Q 013079          362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~~al~  440 (450)
                        ....+.+.|...   | +.+..+                           .++.||||+ + ..++++.++.+.++|.
T Consensus       410 --~~~~l~~~L~~~---G-i~v~~~---------------------------~~~~iRis~~~-~~~t~edi~~~~~~l~  455 (465)
T 3e9k_A          410 --PNKDVFQELEKR---G-VVCDKR---------------------------NPNGIRVAPVP-LYNSFHDVYKFTNLLT  455 (465)
T ss_dssp             --TTCCHHHHHHTT---T-EECEEE---------------------------TTTEEEEBCCT-TTCCHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHC---C-EEEecC---------------------------CCCEEEEeCcc-cCCCHHHHHHHHHHHH
Confidence              234566666542   3 333211                           147899999 7 7777888888888887


Q ss_pred             Hhhhc
Q 013079          441 RMQDS  445 (450)
Q Consensus       441 ~~~~~  445 (450)
                      ++.+.
T Consensus       456 ~~l~~  460 (465)
T 3e9k_A          456 SILDS  460 (465)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            76544

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.94  E-value=2.4e-25  Score=224.86  Aligned_cols=241  Identities=12%  Similarity=0.043  Sum_probs=168.8

Q ss_pred             CccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC--------CC--eEEEecChHHHHHHHHHHH
Q 013079           66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TE--AAYCTASDKAGMSAISSVL  134 (450)
Q Consensus        66 tt~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g--------~~--~~~~tsg~~~gt~ai~~al  134 (450)
                      .+++.+.+ +++.+.+...     ..+.|+.  .....++++.+++++.        .+  .+++|+|   |++|+++++
T Consensus        65 ~~~~~~~v~~a~~~~~~~~-----~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G---~t~al~~~~  134 (420)
T 4f4e_A           65 KIPLLRAVRDAEKARVEAG-----LPRGYLP--IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALG---GTGALKIGA  134 (420)
T ss_dssp             CCCCCHHHHHHHHHHHHTC-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHH
T ss_pred             CccCcHHHHHHHHHHhccC-----CCCCCCC--CCCcHHHHHHHHHHhcCCCccccccCceEEEECCc---cHHHHHHHH
Confidence            44444443 6666665531     2234542  2234567777777652        34  7899999   999999994


Q ss_pred             --HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----C---CHHHHHHhhhc---CCceEEEEecCCCCc
Q 013079          135 --MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----S---DHEMVNSAIVQ---GRTKVLYFESISNPT  202 (450)
Q Consensus       135 --~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----~---d~~~l~~ai~~---~~t~lv~i~~~~Npt  202 (450)
                        .+++.+||+|+++.|.|+++...+.     ..|.++..++.    +   |++++++++ +   ++++++++++|+|||
T Consensus       135 ~~~~~~~~gd~Vlv~~p~~~~~~~~~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l-~~~~~~~~~v~i~~p~NPt  208 (420)
T 4f4e_A          135 DFLRTLNPKAKVAISDPSWENHRALFD-----MAGFEVVAYPYYDAKTNGVNFDGMLAAL-NGYEPGTIVVLHACCHNPT  208 (420)
T ss_dssp             HHHHHHCTTCCEEEEESCCHHHHHHHH-----HTTCCEEEEECEETTTTEECHHHHHHHH-TTCCTTCEEEEECSSCTTT
T ss_pred             HHHHHhCCCCEEEEeCCCcHhHHHHHH-----HcCCeEEEeeeeccccCccCHHHHHHHH-HhCCCCCEEEEeCCCCCCC
Confidence              4568999999999999999988775     35777777776    2   899999999 5   678999999999999


Q ss_pred             ccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-----------cCCCCeEEEeCCCCccccCccceEEEEEc---C
Q 013079          203 LAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-----------ARLGADVVVHSISKFISGGADIIAGAVCG---P  265 (450)
Q Consensus       203 G~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-----------~~~g~di~~~S~sK~~g~~g~~igG~l~~---~  265 (450)
                      |.+.+   +++|+++|+++|+++|+|++|..+.++.           ...+.++++.|+||.+|++|+|+ ||++.   +
T Consensus       209 G~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~Ri-G~~~~~~~~  287 (420)
T 4f4e_A          209 GVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERV-GALSIITDS  287 (420)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCE-EEEEEECSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCc-EEEEEEcCC
Confidence            99965   6689999999999999999997665431           12357899999999999999999 88742   4


Q ss_pred             HHHHHHHHHH-hhh--hhhccCCCchHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          266 ANLVNSMMDL-HQG--ALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       266 ~~~~~~l~~~-~~~--~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      +++++.+... ...  ......+...+.++...+..       .+++....+++.++++.+.+.|+++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          288 KDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5655543221 110  11122233344444333322       1234556667888999999999886

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.94  E-value=1e-25  Score=228.19  Aligned_cols=296  Identities=14%  Similarity=0.122  Sum_probs=194.0

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh----C--CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEe
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----G--TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAA  147 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~----g--~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~  147 (450)
                      +++.+.+.. +++..+.+.|+.  .....++++.||+++    +  .+.+++|+|   +++++.+ +..++++||+|+++
T Consensus        76 ~a~~~~~~~-~~~~~~~~~y~~--~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G---~~~al~~-l~~l~~~gd~Vl~~  148 (432)
T 3ei9_A           76 SAMAKKAHE-LSTIEGYSGYGA--EQGAKPLRAAIAKTFYGGLGIGDDDVFVSDG---AKCDISR-LQVMFGSNVTIAVQ  148 (432)
T ss_dssp             HHHHHHHHH-TTSTTTCCCCCC--TTCCHHHHHHHHHHHHTTTTCCGGGEEEESC---HHHHHHH-HHHHHCTTCCEEEE
T ss_pred             HHHHHHHhc-ccccCCccCCCC--CCCCHHHHHHHHHHHHccCCCCcceEEECCC---hHHHHHH-HHHHcCCCCEEEEe
Confidence            555555543 333333344542  334578899999985    3  457999999   9999987 57778999999999


Q ss_pred             CCCchhHHHHHHHhCCCccC---------eeEEEeCCCCHHHHHHhhh-cCCceEEEEecCCCCcccccC---HHHHHHH
Q 013079          148 RTLYGGTHALLTHFFPRACN---------ITTTFVDISDHEMVNSAIV-QGRTKVLYFESISNPTLAVAN---IPELSRL  214 (450)
Q Consensus       148 ~~~y~~~~~~~~~~~~~~~g---------~~v~~v~~~d~~~l~~ai~-~~~t~lv~i~~~~NptG~v~~---l~~I~~l  214 (450)
                      .|.|+++...+.....  .|         .++.+++.++.+.+...+. .+++++|++++|+||||.+.+   +++|+++
T Consensus       149 ~p~y~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l  226 (432)
T 3ei9_A          149 DPSYPAYVDSSVIMGQ--TGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEF  226 (432)
T ss_dssp             ESCCTHHHHHHHHHTC--SCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCC--cccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999887753322  12         2455655542211111121 357899999999999999976   6677788


Q ss_pred             HHhcCCEEEEeCCCCCCCCC-----ccCC----CCeEEEeCCCCccccCccceEEEEEcCHHH--------HHHHHHHhh
Q 013079          215 AHDKGVTVVVDNTFSPLVLS-----PARL----GADVVVHSISKFISGGADIIAGAVCGPANL--------VNSMMDLHQ  277 (450)
Q Consensus       215 a~~~gi~livD~~~~~~~~~-----~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~--------~~~l~~~~~  277 (450)
                      |+++|+++|+|++|+.+...     ...+    +.++++.|+||.+|++|+|+ ||+++++++        .+.+.....
T Consensus       227 a~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~  305 (432)
T 3ei9_A          227 AKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRL-GWTVIPKKLLYSDGFPVAKDFNRIIC  305 (432)
T ss_dssp             HHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCC-EEEECCTTCBCTTSCBHHHHHHHHHH
T ss_pred             HHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccce-EEEEEChHHhhcchHHHHHHHHHHhc
Confidence            99999999999999544321     1111    46899999999999999998 999988877        666655443


Q ss_pred             hhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                      .. ....+.+.+.++..++.  ..+++.+..+++.++++++.+.|+++++.+..|.                   .|.++
T Consensus       306 ~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-------------------~~~~~  365 (432)
T 3ei9_A          306 TC-FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGK-------------------NAPYV  365 (432)
T ss_dssp             HS-CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECS-------------------SSSEE
T ss_pred             cc-cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecCCC-------------------cceEE
Confidence            11 11122233333333322  1234556667788999999999998876654332                   35689


Q ss_pred             EEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          356 CLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       356 ~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                      ++.+++.+ ...+...+..  ..| +.+..|+.+..                     ..++.||||++ .
T Consensus       366 ~~~~~~~~-~~~~~~~ll~--~~g-v~v~~g~~f~~---------------------~~~~~iRis~~-~  409 (432)
T 3ei9_A          366 WVHFPNQS-SWDVFAEILE--KTH-VVTTPGSGFGP---------------------GGEGFVRVSAF-G  409 (432)
T ss_dssp             EEECTTSC-HHHHHHHHHH--HHC-EECEEGGGGCG---------------------GGTTEEEEECC-S
T ss_pred             EEECCCCC-HHHHHHHHHH--HCC-EEEeCchHhCC---------------------CCCCEEEEEec-C
Confidence            99998432 3444444432  123 56666644311                     01578999998 5

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.94  E-value=5.6e-26  Score=227.92  Aligned_cols=303  Identities=15%  Similarity=0.142  Sum_probs=203.9

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEE
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVV  145 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi  145 (450)
                      +++.+.+...+      +.+..+..+..++++++++++++.+.+++|+|   |++|++++++.+..       +| |+|+
T Consensus        62 ~a~~~~~~~~~------~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~g---g~~a~~~al~~~~~~~~~~~~~g~~~vi  132 (406)
T 4adb_A           62 EALNEQASKFW------HTGNGYTNEPVLRLAKKLIDATFADRVFFCNS---GAEANEAALKLARKFAHDRYGSHKSGIV  132 (406)
T ss_dssp             HHHHHHHTTCS------CCCTTSCCHHHHHHHHHHHHHSSCSEEEEESS---HHHHHHHHHHHHHHHHHHHTCTTCCEEE
T ss_pred             HHHHHHHHhcc------cccCCcCCHHHHHHHHHHHhhCCCCeEEEeCc---HHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence            56666554432      22234567889999999999999999999999   99999999998764       66 8999


Q ss_pred             EeCCCchhHHHHHHHhCCC--------ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc-----CHHHHH
Q 013079          146 AARTLYGGTHALLTHFFPR--------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA-----NIPELS  212 (450)
Q Consensus       146 ~~~~~y~~~~~~~~~~~~~--------~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~-----~l~~I~  212 (450)
                      +.+|.|+++..........        ..+..+..++.+|+++|++++ ++++++|+++ |+||+|.+.     ++++|.
T Consensus       133 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~  210 (406)
T 4adb_A          133 AFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALI-DDSTCAVIVE-PIQGEGGVVPASNAFLQGLR  210 (406)
T ss_dssp             EETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTC-STTEEEEEEC-SEETTTTSEECCHHHHHHHH
T ss_pred             EECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHh-cCCeEEEEEe-CCcCCCCCccCCHHHHHHHH
Confidence            9999999875443222110        012466777778999999999 7899999999 899999764     699999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCC
Q 013079          213 RLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP  285 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~  285 (450)
                      ++|+++|+++|+|++|+++....       .....|++  |+||.++ +|.|+ |+++.++++++.+.....+ ....++
T Consensus       211 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~-G~~~~~~~~~~~~~~~~~~-~~~~~~  285 (406)
T 4adb_A          211 ELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPV-GALLATEECARVMTVGTHG-TTYGGN  285 (406)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECHHHHHTCCTTSSC-CSSTTC
T ss_pred             HHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCe-EEEEEcHHHHhhhccCCcC-CCCCCC
Confidence            99999999999999996553321       12346777  4799999 78998 9999999888776543321 112233


Q ss_pred             CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--
Q 013079          286 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--  363 (450)
Q Consensus       286 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--  363 (450)
                      .+.+.++...+..++. ....+++.++++++.+.|++.+...  +...             +..+.|.+++|.++...  
T Consensus       286 ~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~-------------~~~~~g~~~~~~~~~~~~~  349 (406)
T 4adb_A          286 PLASAVAGKVLELINT-PEMLNGVKQRHDWFVERLNTINHRY--GLFS-------------EVRGLGLLIGCVLNADYAG  349 (406)
T ss_dssp             HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--CCEE-------------EEEEETTEEEEEECTTTTT
T ss_pred             HHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC--CCce-------------EEEEEEEEEEEEEeCCcHH
Confidence            3333333333333222 4556667888888888887653211  0000             01145779999998521  


Q ss_pred             HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      ....+.+.|...   | +.+..+                           .++.|||+++ ...+++.++.+.++|.
T Consensus       350 ~~~~~~~~l~~~---g-i~v~~~---------------------------~~~~iRi~~~-~~~~~e~i~~~~~~l~  394 (406)
T 4adb_A          350 QAKQISQEAAKA---G-VMVLIA---------------------------GGNVVRFAPA-LNVSEEEVTTGLDRFA  394 (406)
T ss_dssp             CHHHHHHHHHHT---T-EECEES---------------------------STTEEEECCC-TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC---C-cEEeec---------------------------CCCeEEEECC-CCCCHHHHHHHHHHHH
Confidence            356677777642   3 333322                           1478999877 5444444444444443

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.94  E-value=1.2e-25  Score=224.11  Aligned_cols=309  Identities=15%  Similarity=0.120  Sum_probs=201.7

Q ss_pred             CCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHh
Q 013079           83 ELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHF  161 (450)
Q Consensus        83 ~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~  161 (450)
                      .++||+..|. +....+.++++++.+++++|++. ++||+|   ||+|+++++.. +.+||+|++..++|++....  ..
T Consensus        20 ~~~~~~~~h~-~~~~~~~~~~~~~~l~~~~~~~~~v~~~~s---gt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~--~~   92 (379)
T 3ke3_A           20 VYTDRALNHM-SKAFQEVMNDLLSNLKTVYNAEAAVIIPGS---GTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWT--QI   92 (379)
T ss_dssp             SCCTTSCCTT-SHHHHHHHHHHHHHHHHHHTCSEEEEEESC---HHHHHHHHHHH-HCTTCEEEEEECSHHHHHHH--HH
T ss_pred             hccCCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCEEEEcCC---hhHHHHHHHHh-CCCCCeEEEEeCCchhHHHH--HH
Confidence            4678766554 44445788999999999999865 678899   99999998854 57899999999999875421  11


Q ss_pred             CCCccC--eeEEEeC--------------CCCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEE
Q 013079          162 FPRACN--ITTTFVD--------------ISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTV  222 (450)
Q Consensus       162 ~~~~~g--~~v~~v~--------------~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~l  222 (450)
                      ... .|  .++.+++              ..|++++++++.++++++|++.+++|++|.+.|   +++|.++|+++|+++
T Consensus        93 ~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~l  171 (379)
T 3ke3_A           93 LEK-GKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLL  171 (379)
T ss_dssp             HHH-HCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEE
T ss_pred             HHH-hCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEE
Confidence            111 23  3555553              248999999984358999999999999999999   999999999999999


Q ss_pred             EEeCCCC-CCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh-hh-----------------hhcc
Q 013079          223 VVDNTFS-PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-GA-----------------LMLL  283 (450)
Q Consensus       223 ivD~~~~-~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-~~-----------------~~~~  283 (450)
                      |+|++++ ...++...+++|+++.|+||+++++.. + |+++.++++++.+..... ..                 ....
T Consensus       172 i~D~~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~g-~-g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  249 (379)
T 3ke3_A          172 VIDCIASGCVWLDMKELGIDVLISAPQKGWSSTPC-A-GLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAY  249 (379)
T ss_dssp             EEECTTCTTCCCCHHHHTCSEEEECTTTTTCSCCC-E-EEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCC
T ss_pred             EEEecccCCccccccccCCCEEEecchhhcCCCCc-e-EEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCC
Confidence            9999985 233344445899999999998875532 4 899999888877653110 00                 0001


Q ss_pred             CCCchHHHHH---HHHccCC--cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          284 GPTMNPKVAF---ELSERIP--HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       284 g~~~~~~~a~---~~~~~~~--~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      ..+++...++   .++..+.  .+....+++.++++++.+.|+++++.+..+.-.                ..+.+..+.
T Consensus       250 ~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~----------------~~~~i~~~~  313 (379)
T 3ke3_A          250 HATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGF----------------EAPGVVVSY  313 (379)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTC----------------BCSSEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccc----------------cCceEEEEc
Confidence            1122222111   2222111  245566677888999999999987755433210                122355566


Q ss_pred             eCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHH
Q 013079          359 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQ  434 (450)
Q Consensus       359 l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~  434 (450)
                      +++.+ . .+...|..   .| +.++.|..|+...                  ....+.||||+. .    ++++.+++.
T Consensus       314 ~~~~~-~-~~~~~L~~---~G-i~v~~g~~~~~~~------------------~~~~~~lRis~~-~~~t~~di~~~~~~  368 (379)
T 3ke3_A          314 TERDD-M-HKGSAFAE---AG-LQIAAGVPLKVGE------------------PDNFKTFRLGLF-GLDKLTDIDGTVER  368 (379)
T ss_dssp             CSCHH-H-HSSHHHHH---TT-CCCEECCCCSSCC------------------CTTCCEEEEECC-SHHHHTCHHHHHHH
T ss_pred             cCCcc-h-HHHHHHHH---CC-eEEeCCccccccc------------------cCcCCEEEEeCC-cCCCHHHHHHHHHH
Confidence            65543 2 12344443   23 5677775443210                  012578999998 6    455555555


Q ss_pred             HHHHHHHh
Q 013079          435 FEKALSRM  442 (450)
Q Consensus       435 l~~al~~~  442 (450)
                      |.++++++
T Consensus       369 l~~~l~~~  376 (379)
T 3ke3_A          369 FEKALDEV  376 (379)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555544

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.94  E-value=9.3e-25  Score=216.41  Aligned_cols=329  Identities=14%  Similarity=0.152  Sum_probs=215.3

Q ss_pred             CccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh---ccCC
Q 013079           66 ATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL---CSSG  141 (450)
Q Consensus        66 tt~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l---~~~g  141 (450)
                      .+++.+. .+++.+.+...+.        +  ..+..+++++.||+++|.+.+++|+|   |++|+++++.++   +++|
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~--------~--~~~~~~~l~~~la~~~~~~~v~~~~g---gt~al~~~~~~~~~~~~~g   74 (375)
T 2fnu_A            8 EPCLDKEDKKAVLEVLNSKQL--------T--QGKRSLLFEEALCEFLGVKHALVFNS---ATSALLTLYRNFSEFSADR   74 (375)
T ss_dssp             CCCCCHHHHHHHHHHHTSSCC--------S--SSHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHSSCCCTTS
T ss_pred             CCCCCHHHHHHHHHHHHcCcc--------c--CChHHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHhcccCCCC
Confidence            3444444 3666666643221        1  24678999999999999999999999   999999999999   8899


Q ss_pred             CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHH
Q 013079          142 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH  216 (450)
Q Consensus       142 d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~  216 (450)
                      |+|+++.++|+++...+.     ..|.++.+++.+     |+++|++++ ++++++|+++++   ||.+.|+++|.++|+
T Consensus        75 d~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~---tG~~~~l~~i~~l~~  145 (375)
T 2fnu_A           75 NEIITTPISFVATANMLL-----ESGYTPVFAGIKNDGNIDELALEKLI-NERTKAIVSVDY---AGKSVEVESVQKLCK  145 (375)
T ss_dssp             CEEEECSSSCTHHHHHHH-----HTTCEEEECCBCTTSSBCGGGSGGGC-CTTEEEEEEECG---GGCCCCHHHHHHHHH
T ss_pred             CEEEECCCccHhHHHHHH-----HCCCEEEEeccCCCCCCCHHHHHhhc-CcCceEEEEeCC---cCCccCHHHHHHHHH
Confidence            999999999999988775     268888888764     788999988 778998887665   999999999999999


Q ss_pred             hcCCEEEEeCCCCCCCC-CccCCC--CeEEEeCCC--CccccCccceEEEEEcC-HHHHHHHHHHhhhhh----------
Q 013079          217 DKGVTVVVDNTFSPLVL-SPARLG--ADVVVHSIS--KFISGGADIIAGAVCGP-ANLVNSMMDLHQGAL----------  280 (450)
Q Consensus       217 ~~gi~livD~~~~~~~~-~~~~~g--~di~~~S~s--K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~----------  280 (450)
                      ++|+++|+|++|+.... ....++  .|+++.|+|  |++++ |  +||+++.+ +++++.+.....+..          
T Consensus       146 ~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T 2fnu_A          146 KHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEV  222 (375)
T ss_dssp             HHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEE
T ss_pred             HcCCEEEEECccccCCeECCeeccccCCeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCcccccccccc
Confidence            99999999999843221 111121  267766766  99986 6  54555534 778887766543211          


Q ss_pred             hccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013079          281 MLLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL  357 (450)
Q Consensus       281 ~~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~  357 (450)
                      ...+  ..+.+..+.......+.+....++..++++++.+.|++++ ..+..+...              ..+.+.++++
T Consensus       223 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--------------~~~~~~~~~~  288 (375)
T 2fnu_A          223 KSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLK--------------DKSSNHLYPI  288 (375)
T ss_dssp             SSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCS--------------SCCCCSCEEE
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCC--------------CCcceEEEEE
Confidence            0011  1234444444433456677777888899999999998874 343322100              0022346677


Q ss_pred             EeCCH-H-HHHHHHHHhhccccccccccccccccc-cccccccc---cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          358 DMETE-E-KANRLMNYLQNYAQFGFMAVSLGYYET-LMSCSGSS---TSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       358 ~l~~~-~-~~~~~~~~l~~~~~~g~i~vs~G~~~s-~~~~~~~~---~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      .++.. . ....+.+.|...   | +.++.+  |. ....+...   ....++....    ...+.||||++ ...+++.
T Consensus       289 ~~~~~~~~~~~~l~~~L~~~---g-i~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~-~~~t~~~  357 (375)
T 2fnu_A          289 LMHQKFFTCKKLILESLHKR---G-ILAQVH--YKPIYQYQLYQQLFNTAPLKSAED----FYHAEISLPCH-ANLNLES  357 (375)
T ss_dssp             EECGGGGGGHHHHHHHHHHT---T-EECBCC--CCCGGGSHHHHHHHCCCCCHHHHH----HHHHEEEECCC-TTCCHHH
T ss_pred             EeCccccchHHHHHHHHHHC---C-CCcccc--ccccccchhhhcCCCccCChHHHH----HHhCEEEecCC-CCCCHHH
Confidence            77632 1 356777777642   3 454422  11 00000000   0000110111    11368999999 8777888


Q ss_pred             HHHHHHHHHHhhh
Q 013079          432 WSQFEKALSRMQD  444 (450)
Q Consensus       432 i~~l~~al~~~~~  444 (450)
                      ++.+.++|.++.+
T Consensus       358 i~~~~~~l~~~~~  370 (375)
T 2fnu_A          358 VQNIAHSVLKTFE  370 (375)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888776543

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.94  E-value=7.5e-25  Score=217.72  Aligned_cols=287  Identities=11%  Similarity=0.128  Sum_probs=191.1

Q ss_pred             hHHHHHHHHHHHhCC------CeEEEecChHHHHHHHHHHHHHhc---cCCCEEEEeC-CCchhHH-HHHHHhCCCccCe
Q 013079          100 TVLNLSRQMAALEGT------EAAYCTASDKAGMSAISSVLMQLC---SSGGHVVAAR-TLYGGTH-ALLTHFFPRACNI  168 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~------~~~~~tsg~~~gt~ai~~al~~l~---~~gd~Vi~~~-~~y~~~~-~~~~~~~~~~~g~  168 (450)
                      ...++++.++++++.      +.+++|+|   |++|+++++.++.   ++||+|++.. +.|+... ..+.     ..|.
T Consensus        39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g---~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~-----~~g~  110 (385)
T 2bkw_A           39 IFQRVLKNTRAVFKSAAASKSQPFVLAGS---GTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLR-----SYGA  110 (385)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESC---TTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHH-----HTTC
T ss_pred             HHHHHHHHHHHHhCCCCCCCCceEEEcCc---hHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHH-----HcCC
Confidence            456788888888875      56899999   9999999999987   8999998874 4555543 3332     2688


Q ss_pred             eEEEeCC-C-----CHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCCC--CCCCCccC
Q 013079          169 TTTFVDI-S-----DHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTFS--PLVLSPAR  237 (450)
Q Consensus       169 ~v~~v~~-~-----d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~~--~~~~~~~~  237 (450)
                      ++++++. +     |+++|++++ ++ ++++|++++++||||.+.|+++|.++|+++  |+++|+|++|+  ....+...
T Consensus       111 ~~~~v~~~~~~~~~d~~~l~~~l-~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~  189 (385)
T 2bkw_A          111 QVDVVRPLKIGESVPLELITEKL-SQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDE  189 (385)
T ss_dssp             EEEEECCSSTTSCCCHHHHHHHH-HHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTT
T ss_pred             ceEEEecCCCCCCCCHHHHHHHH-hcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccc
Confidence            8888887 3     899999999 54 899999999999999999999999999999  99999999983  23334445


Q ss_pred             CCCeEEEeCCCCccc-cCccceEEEEEcCHHHHH-HHH------------------H----HhhhhhhccCCC-chHH-H
Q 013079          238 LGADVVVHSISKFIS-GGADIIAGAVCGPANLVN-SMM------------------D----LHQGALMLLGPT-MNPK-V  291 (450)
Q Consensus       238 ~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~-~l~------------------~----~~~~~~~~~g~~-~~~~-~  291 (450)
                      +++|+++.|+||+++ ++|  + |+++.++++++ .+.                  .    ...+.....+.. .... +
T Consensus       190 ~~~d~~~~s~~K~~~~~~G--~-G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  266 (385)
T 2bkw_A          190 WGVDFALTASQKAIGAPAG--L-SISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINS  266 (385)
T ss_dssp             TTCSEEEEESSSTTCCCSC--E-EEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHH
T ss_pred             cCceEEEecCccccccCCc--c-eEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHH
Confidence            578999999999665 566  5 88888887766 431                  1    111000001111 1121 1


Q ss_pred             HHHHHccCC--cHHHHHHHHHHHHHHHHHHH-HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013079          292 AFELSERIP--HLGLRMKEHCHRALIFARRM-KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL  368 (450)
Q Consensus       292 a~~~~~~~~--~l~~~~~~~~~~~~~l~~~L-~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~  368 (450)
                      +..++..+.  .+....+++.++++++.+.| ++++.++..|. +.             .+..+++++|.+++   ...+
T Consensus       267 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~-------------~~~~~~~~~~~~~~---~~~~  329 (385)
T 2bkw_A          267 LDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRY-PS-------------NMSAHGLTAVYVAD---PPDV  329 (385)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCS-SS-------------TTBCSSCEEEECSC---HHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccC-cc-------------cccCCceEEEecCC---HHHH
Confidence            222222211  24556677788999999999 87765554321 00             00146689999976   4567


Q ss_pred             HHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCC---CCHHHHHHHHHHHHHHh
Q 013079          369 MNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYL---GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       369 ~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~---~~~~~~i~~l~~al~~~  442 (450)
                      .+.|...   | +.++.|..+                      ...++.+||| +| .   ..+++.++.+.++|.++
T Consensus       330 ~~~l~~~---g-i~v~~g~~~----------------------~~~~~~iRis~~~-~~~~~~~~e~i~~~~~~l~~~  380 (385)
T 2bkw_A          330 IAFLKSH---G-VVIAGGIHK----------------------DIGPKYIRIGHMG-VTACNKNLPYMKNCFDLIKLA  380 (385)
T ss_dssp             HHHHHHT---T-EECBCCCCT----------------------TTGGGEEEECCCG-GGTSSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHC---C-eEEeCCCCc----------------------ccCCCEEEEEccc-cccccCCHHHHHHHHHHHHHH
Confidence            7766542   3 555555321                      0124789999 77 3   23444455555555443

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.94  E-value=2.5e-26  Score=227.06  Aligned_cols=310  Identities=12%  Similarity=0.066  Sum_probs=199.3

Q ss_pred             CccccCC-HHHHHHhhcCCCCCCCCCcc---ccCCCChhHHHHHHHHHHHhCCC---eE-EEecChHHHHHHHHHHHHHh
Q 013079           66 ATFTVME-PETMRRMFAGELGPDRDFFI---YSRHFNPTVLNLSRQMAALEGTE---AA-YCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        66 tt~~~~~-~~~~~~~~~~~~~n~~~~~~---y~r~~~~~~~~l~~~iA~l~g~~---~~-~~tsg~~~gt~ai~~al~~l  137 (450)
                      ++++.+. .+++.+.+....+++++.+.   ++.......+++++.+++++|.+   .+ ++|+|   |++|+++++.++
T Consensus        12 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g---~t~a~~~~~~~l   88 (362)
T 2c0r_A           12 PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGG---ASTQFAMIPMNF   88 (362)
T ss_dssp             SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSH---HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCC---chHHHHHHHHhc
Confidence            3333333 36666666543333333111   22222345789999999999975   54 67799   999999999999


Q ss_pred             ccCCCEEEEeCCCchhHH--HHHHHhCCCccCeeEEEeCCC---------CHHHHHHhhhcCCceEEEEecCCCCcccc-
Q 013079          138 CSSGGHVVAARTLYGGTH--ALLTHFFPRACNITTTFVDIS---------DHEMVNSAIVQGRTKVLYFESISNPTLAV-  205 (450)
Q Consensus       138 ~~~gd~Vi~~~~~y~~~~--~~~~~~~~~~~g~~v~~v~~~---------d~~~l~~ai~~~~t~lv~i~~~~NptG~v-  205 (450)
                      +++||+|++..+.|.+..  ..+.     ..| ++++++.+         |++++  .+ +++|++|++++++||||.+ 
T Consensus        89 ~~~gd~vl~~~~~~~~~~~~~~~~-----~~g-~~~~v~~~~~~~~~~~~~~~~~--~i-~~~t~~v~~~~~~n~tG~~~  159 (362)
T 2c0r_A           89 LKEGQTANYVMTGSWASKALKEAK-----LIG-DTHVAASSEASNYMTLPKLQEI--QL-QDNAAYLHLTSNETIEGAQF  159 (362)
T ss_dssp             CCTTCEEEEEECSHHHHHHHHHHH-----HHS-CEEEEEECGGGTTCSCCCGGGC--CC-CTTEEEEEEESEETTTTEEC
T ss_pred             CCCCCeEEEEecCcHhHHHHHHHH-----HhC-CeEEEecccccccccCCCHHHc--cc-CCCcCEEEEeCCcCccceec
Confidence            999999998877655432  2222     257 77766532         33333  25 7789999999999999995 


Q ss_pred             cCHHHHHHHHHhcCCEEEEeCCCCCCC--CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh------
Q 013079          206 ANIPELSRLAHDKGVTVVVDNTFSPLV--LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ------  277 (450)
Q Consensus       206 ~~l~~I~~la~~~gi~livD~~~~~~~--~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~------  277 (450)
                      .|+++|      +|+++|+|++|....  .+..  ..|+++.|+||++|++|  + ||++.++++++.+.....      
T Consensus       160 ~~l~~i------~~~~vivD~a~~~~~~~~~~~--~~d~~~~s~~K~~g~~G--~-G~l~~~~~~~~~l~~~~~~~~~~~  228 (362)
T 2c0r_A          160 KAFPDT------GSVPLIGDMSSDILSRPFDLN--QFGLVYAGAQKNLGPSG--V-TVVIVREDLVAESPKHLPTMLRYD  228 (362)
T ss_dssp             SSCCCC------TTSCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTCCSS--C-EEEEEEGGGSSSCCTTSCGGGCHH
T ss_pred             cccccc------CCCEEEEEChhhccCCccchh--HCcEEEEeccccccCcC--c-EEEEEcHHHHhhccccCchHHhHH
Confidence            788876      899999999994322  2222  24899999999999887  5 999888877654432100      


Q ss_pred             ---hhhhccCCC--chHHHHHHHHccC-C--cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhcc
Q 013079          278 ---GALMLLGPT--MNPKVAFELSERI-P--HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANK  347 (450)
Q Consensus       278 ---~~~~~~g~~--~~~~~a~~~~~~~-~--~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~  347 (450)
                         ......++.  ..+.++..++... +  .+..+.+++.++++++.+.|++++ . .+..+.     ..         
T Consensus       229 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-----~~---------  294 (362)
T 2c0r_A          229 TYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDV-----DS---------  294 (362)
T ss_dssp             HHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCG-----GG---------
T ss_pred             HHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCCh-----HH---------
Confidence               000111222  2222222333222 1  356677778899999999999887 4 443211     00         


Q ss_pred             CCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013079          348 EYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT  427 (450)
Q Consensus       348 ~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~  427 (450)
                        ..+++++|.++.......|.+.|...   | +.+..|..+                         .+.||||++ ..+
T Consensus       295 --~~~~~~~~~~~~~~~~~~~~~~L~~~---g-i~~~~g~~~-------------------------~~~iRis~~-~~~  342 (362)
T 2c0r_A          295 --RSDMNITFRLASEELEKEFVKASEQE---G-FVGLKGHRS-------------------------VGGLRASIY-NAV  342 (362)
T ss_dssp             --BCSSEEEEECSCHHHHHHHHHHHHHT---T-EESCBCCTT-------------------------TCSEEEECC-TTS
T ss_pred             --cCCcEEEEEcCCcchHHHHHHHHHHC---C-CeeccCCCC-------------------------CCEEEEECC-CCC
Confidence              13457899988644567788888652   3 444333110                         256999999 877


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 013079          428 LDQRWSQFEKALSRMQD  444 (450)
Q Consensus       428 ~~~~i~~l~~al~~~~~  444 (450)
                      +++.++.+.++|+++.+
T Consensus       343 ~~e~i~~l~~~l~~~~~  359 (362)
T 2c0r_A          343 PYESCEALVQFMEHFKR  359 (362)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            78888998888887643

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.94  E-value=6.4e-25  Score=219.65  Aligned_cols=301  Identities=13%  Similarity=0.148  Sum_probs=201.1

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc-------cCCCEEEE
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC-------SSGGHVVA  146 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~-------~~gd~Vi~  146 (450)
                      +++.+.++..      .|.++++.++..++++++++++++.+.++||+|   |++|+..+++.+.       .++++|++
T Consensus        59 ~a~~~~~~~~------~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~g---g~ea~~~al~~~~~~~~~~g~~~~~vi~  129 (395)
T 3nx3_A           59 AKIKAQVDKL------LHTSNLYYNENIAAAAKNLAKASALERVFFTNS---GTESIEGAMKTARKYAFNKGVKGGQFIA  129 (395)
T ss_dssp             HHHHHHHTTC------SCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred             HHHHHHHHhc------cccccccCCHHHHHHHHHHHHhcCCCeEEEeCC---HHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence            5555555432      244555678899999999999999999999999   9999999998765       34789999


Q ss_pred             eCCCchhHHHHHHH---------hCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHH
Q 013079          147 ARTLYGGTHALLTH---------FFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSR  213 (450)
Q Consensus       147 ~~~~y~~~~~~~~~---------~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~  213 (450)
                      .++.|++.......         .... .+..+.+++.+|+++|++++ ++++++|++++++|++|.+.+    +++|.+
T Consensus       130 ~~~~yhg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~  207 (395)
T 3nx3_A          130 FKHSFHGRTLGALSLTANEKYQKPFKP-LISGVKFAKYNDISSVEKLV-NEKTCAIILESVQGEGGINPANKDFYKALRK  207 (395)
T ss_dssp             ETTCCCCSSHHHHTTCCCHHHHGGGCS-CCSCEEEECTTCHHHHHTTC-CTTEEEEEEESEECTTSCEECCHHHHHHHHH
T ss_pred             EcCCcCCCCHHHHhhcCCcccccccCC-CCCCcEEeCCCCHHHHHHhc-cCCeEEEEEeCccCCCCcccCCHHHHHHHHH
Confidence            99999876433211         1111 34567788888999999999 788999999999999999977    999999


Q ss_pred             HHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHH-HHHHHHHhhhhhhccCC
Q 013079          214 LAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGP  285 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~  285 (450)
                      +|++||+++|+||+|.++...       ......|++  |+||.+++ |.++ |++++++++ ++.+..... .....++
T Consensus       208 l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~~-G~~~~~~~~~~~~~~~~~~-~~~~~~~  282 (395)
T 3nx3_A          208 LCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGC-GLSV-GAFVINQKVASNSLEAGDH-GSTYGGN  282 (395)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTT-TSCC-EEEEECHHHHHHHSCTTCC-SSCBSCC
T ss_pred             HHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccC-CCce-EEEEEchhhhhhhcCCccc-CCCCCCC
Confidence            999999999999999655321       112235665  47899986 8898 999999888 766643322 1112333


Q ss_pred             CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          286 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       286 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      .+.+.++..++..++. +...++..++.+++.+.|+    +++.....+                   +.|.+++|.++.
T Consensus       283 ~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~  342 (395)
T 3nx3_A          283 PLVCAGVNAVFEIFKE-EKILENVNKLTPYLEQSLDELINEFDFCKKRK-------------------GLGFMQGLSLDK  342 (395)
T ss_dssp             HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------eEEEEEEEEeCC
Confidence            3333333333321110 1223333444444444444    333211111                   357799999985


Q ss_pred             HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          362 EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       362 ~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                      ......+.+.|...   | +.++.+                           .++.||||++ ...+++.++.+.++|++
T Consensus       343 ~~~~~~~~~~l~~~---G-i~v~~~---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~  390 (395)
T 3nx3_A          343 SVKVAKVIQKCQEN---A-LLLISC---------------------------GENDLRFLPP-LILQKEHIDEMSEKLRK  390 (395)
T ss_dssp             TSCHHHHHHHHHHT---T-EECEEE---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHC---C-CEEecC---------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence            43356777777642   3 333322                           1478999988 76667777777666665


Q ss_pred             h
Q 013079          442 M  442 (450)
Q Consensus       442 ~  442 (450)
                      +
T Consensus       391 ~  391 (395)
T 3nx3_A          391 A  391 (395)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.94  E-value=6.9e-25  Score=223.45  Aligned_cols=252  Identities=11%  Similarity=0.065  Sum_probs=170.6

Q ss_pred             ccccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh-CC-------CeEEE--ecChHHHHHHH
Q 013079           62 IEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE-GT-------EAAYC--TASDKAGMSAI  130 (450)
Q Consensus        62 i~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~-g~-------~~~~~--tsg~~~gt~ai  130 (450)
                      -+.+++++.+.+ +++.++.+..   +...+.|..  .....++++.+|+++ |.       +.+++  |+|   |++|+
T Consensus        61 d~~~~~~v~~av~~a~~~~~~~~---~~~~~~Y~~--~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~g---gt~al  132 (448)
T 3meb_A           61 DESGKPWILPAVKEAEAIISSDL---SKYNKEYPP--VAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLS---GTGSL  132 (448)
T ss_dssp             CTTSCCCCCHHHHHHHHHHHHCT---TTTCCSCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH---HHHHH
T ss_pred             CCCCCEechHHHHHHHHHHhhcc---cCCCCCCCC--CcchHHHHHHHHHHhcCCCccccCcCcEEEEECCc---HHHHH
Confidence            345555555554 4444343111   122344542  234577899999987 64       46888  999   99999


Q ss_pred             HH--HHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC---C-----CHHHHHHhhhc--CCceEEEEecC
Q 013079          131 SS--VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S-----DHEMVNSAIVQ--GRTKVLYFESI  198 (450)
Q Consensus       131 ~~--al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---~-----d~~~l~~ai~~--~~t~lv~i~~~  198 (450)
                      ++  .+..++.+||+|++++|+|+++...+..++.. .|.++..++.   +     |++++++++..  ++++++++++|
T Consensus       133 ~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~-~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p  211 (448)
T 3meb_A          133 HIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNK-LKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACA  211 (448)
T ss_dssp             HHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCT-TTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSS
T ss_pred             HHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHh-CCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCC
Confidence            88  45566789999999999999998877522222 5667766654   2     88999999832  46889999999


Q ss_pred             CCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----------C-CCCeEEEeCCCCccccCccceEEEE-
Q 013079          199 SNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------R-LGADVVVHSISKFISGGADIIAGAV-  262 (450)
Q Consensus       199 ~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-----------~-~g~di~~~S~sK~~g~~g~~igG~l-  262 (450)
                      |||||.+.+   +++|+++|+++|+++|+|++|..+.....           . ...++++.|+||.+|++|+|+ ||+ 
T Consensus       212 ~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~Ri-G~l~  290 (448)
T 3meb_A          212 HNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERI-GCLH  290 (448)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCC-EEEE
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccc-eeee
Confidence            999999987   55699999999999999999966654321           1 135688999999999999999 887 


Q ss_pred             -Ec--------C-H----HHHHHHHHHhhhhhhccCCCchHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHH
Q 013079          263 -CG--------P-A----NLVNSMMDLHQGALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       263 -~~--------~-~----~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~  321 (450)
                       +.        + +    .+++.+...... .....+...+.++..++...       +.+....+++.++++++.+.|+
T Consensus       291 ~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~  369 (448)
T 3meb_A          291 VVHAGVEGSVEKNKALSAAMVSGMTLQIRK-TWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLA  369 (448)
T ss_dssp             EECCCCSSSHHHHHHHHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHHHHHHHHHHHHhc-ccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             55        3 4    455555443321 11122233333443333321       2245555677888999999998


Q ss_pred             hCC
Q 013079          322 KLG  324 (450)
Q Consensus       322 ~~~  324 (450)
                      +++
T Consensus       370 ~~~  372 (448)
T 3meb_A          370 KRK  372 (448)
T ss_dssp             HTT
T ss_pred             hhC
Confidence            864

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.94  E-value=7.4e-25  Score=220.38  Aligned_cols=222  Identities=10%  Similarity=0.049  Sum_probs=162.3

Q ss_pred             CccccCCCChhHHHHHHHHHHHh-C-------CCeEEE--ecChHHHHHHHHHHHH--HhccCC-----CEEEEeCCCch
Q 013079           90 FFIYSRHFNPTVLNLSRQMAALE-G-------TEAAYC--TASDKAGMSAISSVLM--QLCSSG-----GHVVAARTLYG  152 (450)
Q Consensus        90 ~~~y~r~~~~~~~~l~~~iA~l~-g-------~~~~~~--tsg~~~gt~ai~~al~--~l~~~g-----d~Vi~~~~~y~  152 (450)
                      .+.|+.  .+...++++.||+++ +       .+.+++  |+|   |++|++++++  .++.+|     |+|+++.|+|+
T Consensus        67 ~~~y~~--~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g---g~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~  141 (412)
T 1ajs_A           67 NHEYLP--ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG---GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWE  141 (412)
T ss_dssp             CCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCT
T ss_pred             ccCCCC--CCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC---cHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcH
Confidence            344542  344578999999988 4       367899  999   9999999964  446789     99999999999


Q ss_pred             hHHHHHHHhCCCccCee-EEEeCC---C----CHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcC
Q 013079          153 GTHALLTHFFPRACNIT-TTFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKG  219 (450)
Q Consensus       153 ~~~~~~~~~~~~~~g~~-v~~v~~---~----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~g  219 (450)
                      ++...+.     ..|.+ +..++.   +    |+++|++++..  .++++|++++|+||||.+.+   +++|+++|+++|
T Consensus       142 ~~~~~~~-----~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~  216 (412)
T 1ajs_A          142 NHNGVFT-----TAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRF  216 (412)
T ss_dssp             HHHHHHH-----HTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH-----HcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence            9887775     25777 777765   2    89999998833  36888989999999999965   668999999999


Q ss_pred             CEEEEeCCCCCCCCCc-------cC-----CCCeEEEeCCCCccccCccceEEEEEc---CHHHHH----HHHHHhhhhh
Q 013079          220 VTVVVDNTFSPLVLSP-------AR-----LGADVVVHSISKFISGGADIIAGAVCG---PANLVN----SMMDLHQGAL  280 (450)
Q Consensus       220 i~livD~~~~~~~~~~-------~~-----~g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~~----~l~~~~~~~~  280 (450)
                      +++|+|++|..+.+..       ..     .+.++++.|+||.+|++|+|+ ||+++   ++++++    .+..... . 
T Consensus       217 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~-~-  293 (412)
T 1ajs_A          217 LFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV-GNLTVVAKEPDSILRVLSQMQKIVR-V-  293 (412)
T ss_dssp             CEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-
T ss_pred             CEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcce-EEEEEecCCHHHHHHHHHHHHHHHh-c-
Confidence            9999999986664421       11     134699999999999999998 88887   777443    3433222 1 


Q ss_pred             hcc-CCCchHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          281 MLL-GPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       281 ~~~-g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      ... ++.+.+.++..++...       +++....+++.++++++.+.|++++
T Consensus       294 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1ajs_A          294 TWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALK  345 (412)
T ss_dssp             TTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            122 2444454444444332       1345556677888999999998875

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.94  E-value=1.2e-24  Score=217.36  Aligned_cols=310  Identities=17%  Similarity=0.192  Sum_probs=215.2

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .+...++++.+|++++.+.+++|+|   |++|+++++.++ +++||+|+++.++|+++...+.     ..|.++.+++.+
T Consensus        38 ~~~~~~l~~~la~~~~~~~~~~~~~---gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~v~~~  109 (393)
T 1mdo_A           38 GPKNQELEAAFCRLTGNQYAVAVSS---ATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVD  109 (393)
T ss_dssp             SHHHHHHHHHHHHHHCCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBC
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEecC---hHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHH-----HCCCEEEEEecc
Confidence            5788999999999999999999999   999999999999 8999999999999999987775     368888888753


Q ss_pred             ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC-CeEEEeCCC
Q 013079          177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG-ADVVVHSIS  248 (450)
Q Consensus       177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g-~di~~~S~s  248 (450)
                            |+++|++++ ++++++|+++   ||+|.+.++++|.++|+++|+++|+|++|+ +.......++ .|+++.|+|
T Consensus       110 ~~~~~~d~~~l~~~l-~~~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~  185 (393)
T 1mdo_A          110 RDTLMVTPEHIEAAI-TPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFH  185 (393)
T ss_dssp             TTTCCBCHHHHHHHC-CTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECC
T ss_pred             CCcCCCCHHHHHHhc-CCCceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCC
Confidence                  799999999 7789998864   589999999999999999999999999995 3333333345 899999999


Q ss_pred             --CccccCccceEEEEEcC-HHHHHHHHHHhhhhhh------------------ccC--CCchHHHHHHHHccCCcHHHH
Q 013079          249 --KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------------------LLG--PTMNPKVAFELSERIPHLGLR  305 (450)
Q Consensus       249 --K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------------------~~g--~~~~~~~a~~~~~~~~~l~~~  305 (450)
                        |++++  .+ +|+++.+ +++++.+...+.....                  ..|  ..+....+......++.+.+.
T Consensus       186 k~K~l~~--~~-~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~  262 (393)
T 1mdo_A          186 AIKNITC--AE-GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDAL  262 (393)
T ss_dssp             TTSSSCS--SS-CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHH
T ss_pred             CCCcccc--cc-ceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHH
Confidence              88864  35 4898875 7888887665431100                  011  113344443333344556666


Q ss_pred             HHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC---HHHHHHHHHHhhccccccccc
Q 013079          306 MKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~i~  382 (450)
                      .++..++++++.+.|++++.++..+.....             .+.+.+++|.++.   ......+.+.|...   | +.
T Consensus       263 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~---g-i~  325 (393)
T 1mdo_A          263 NARRAAIAAQYHQAMADLPFQPLSLPSWEH-------------IHAWHLFIIRVDEARCGITRDALMASLKTK---G-IG  325 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCEECCCCSSCE-------------ECCCSCEEEECCHHHHSSCHHHHHHHHHHT---T-BC
T ss_pred             HHHHHHHHHHHHHHHhcCCcccccCCCCCC-------------CceeEEEEEEecccccccCHHHHHHHHHhC---C-CC
Confidence            677777888999999887754332110000             0234578999872   11256677777653   3 67


Q ss_pred             ccccccccccccccccc---CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          383 VSLGYYETLMSCSGSST---SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~---~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      ++.|..|.... +....   ...++.....    ....||||++ ...+++.++.+.++|.++.+.
T Consensus       326 v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~lRi~~~-~~~t~~~i~~~~~~l~~~~~~  385 (393)
T 1mdo_A          326 TGLHFRAAHTQ-KYYRERFPTLTLPDTEWN----SERICSLPLF-PDMTESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             CBCCCCCGGGS-HHHHHHSTTCCCHHHHHH----HTTEEEECCC-TTCCHHHHHHHHHHHHHHHC-
T ss_pred             cccccCccccC-hhhhccCCccCChhHHHH----HhCEEEecCC-CCCCHHHHHHHHHHHHHHHhc
Confidence            77765542110 00000   0011111111    1468999999 888888899999988876543

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.93  E-value=4e-25  Score=219.32  Aligned_cols=280  Identities=14%  Similarity=0.176  Sum_probs=194.3

Q ss_pred             CChhHHHHHHHHHHHhCC-CeEEEecChHHHHHHHHHHHHH---hc---cCC-CEEEEeCCCchhHHHHHHHhCCCc---
Q 013079           97 FNPTVLNLSRQMAALEGT-EAAYCTASDKAGMSAISSVLMQ---LC---SSG-GHVVAARTLYGGTHALLTHFFPRA---  165 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~-~~~~~tsg~~~gt~ai~~al~~---l~---~~g-d~Vi~~~~~y~~~~~~~~~~~~~~---  165 (450)
                      ..+...++++.||+++|. +.+++|+|   |++|+++++..   +.   ++| |+|++++++|+++...+.......   
T Consensus        68 ~~~~~~~l~~~la~~~g~~~~v~~~~g---~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~  144 (375)
T 2eh6_A           68 ENPWQEELAHKLVKHFWTEGKVFFANS---GTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFH  144 (375)
T ss_dssp             CCHHHHHHHHHHHHTSSSCEEEEEESS---HHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGT
T ss_pred             CCHHHHHHHHHHHhhcCCCCeEEEeCc---hHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCcccc
Confidence            356788999999999998 88999999   99999999875   34   678 999999999988755443221110   


Q ss_pred             cCe-----eEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-
Q 013079          166 CNI-----TTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-  235 (450)
Q Consensus       166 ~g~-----~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-  235 (450)
                      .|.     .+..++..|+++|++++ ++++++|++++++||||.+.+    +++|.++|+++|+++|+|++|+++.... 
T Consensus       145 ~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~  223 (375)
T 2eh6_A          145 KGFEPLVPGFSYAKLNDIDSVYKLL-DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE  223 (375)
T ss_dssp             TTTCSCCSSEEEECTTCHHHHHTTC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred             CCCCCCCCCceeCCCchHHHHHHHh-cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc
Confidence            122     26666777999999999 778999999999999999988    9999999999999999999996554321 


Q ss_pred             ----cCCC--CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHH
Q 013079          236 ----ARLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEH  309 (450)
Q Consensus       236 ----~~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~  309 (450)
                          ..++  .|++  |+||.++ +|.++ |+++.++++++.+..... .....++.+.+.++..   .++.+....++.
T Consensus       224 ~~~~~~~~~~~d~~--s~SK~~~-~g~~~-G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~l~~~~~~~~~~  295 (375)
T 2eh6_A          224 FYAYQHFNLKPDVI--ALAKGLG-GGVPI-GAILAREEVAQSFTPGSH-GSTFGGNPLACRAGTV---VVDEVEKLLPHV  295 (375)
T ss_dssp             SSGGGGGTCCCSEE--EECGGGG-TTSCC-EEEEEEHHHHTTCCTTSC-CCSSTTCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             chhhhhcCCCCCEE--EEccccc-CCCCe-EEEEEcHHHHhhhcCCCC-CCCCCCCHHHHHHHHH---HHHHHHHHHHHH
Confidence                2335  7877  4669999 48888 888888777766543211 1111122222222222   223333455667


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      .++++++.+.|++++.... +                   +.|.++++.++..  ...+.+.|..   .| +.+..+   
T Consensus       296 ~~~~~~l~~~L~~~~~~~~-~-------------------~~g~~~~~~~~~~--~~~~~~~l~~---~g-i~~~~~---  346 (375)
T 2eh6_A          296 REVGNYFKEKLKELGKGKV-K-------------------GRGLMLGLELERE--CKDYVLKALE---KG-LLINCT---  346 (375)
T ss_dssp             HHHHHHHHHHHHHTTSSEE-E-------------------EETTEEEEECSSC--CHHHHHHHHH---TT-EECEEE---
T ss_pred             HHHHHHHHHHHHHHhcCCc-e-------------------EEEEEEEEEEcCc--HHHHHHHHHH---CC-CEEecC---
Confidence            8888999999988754211 1                   2467899998741  3456666543   22 332221   


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                              .++.||||++ ...+++.++.+.++|.++
T Consensus       347 ------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~  374 (375)
T 2eh6_A          347 ------------------------AGKVLRFLPP-LIIQKEHIDRAISVLREI  374 (375)
T ss_dssp             ------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred             ------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence                                    1478999998 767777777777777653

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.93  E-value=2.9e-24  Score=214.60  Aligned_cols=309  Identities=14%  Similarity=0.198  Sum_probs=212.1

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ..+...++++.+|++++.+.+++|+|   |++|+.+++.++ +++||+|+++.++|+++...+.     ..|.++.+++.
T Consensus        54 ~~~~~~~l~~~la~~~~~~~~i~~~~---gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~  125 (391)
T 3dr4_A           54 VGRFIVEFEKAFADYCGVKHAIACNN---GTTALHLALVAMGIGPGDEVIVPSLTYIASANSVT-----YCGATPVLVDN  125 (391)
T ss_dssp             CSHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECB
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHH-----HCCCEEEEEec
Confidence            46789999999999999999999999   999999999999 8999999999999999988775     36888888876


Q ss_pred             C------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeC
Q 013079          176 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHS  246 (450)
Q Consensus       176 ~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S  246 (450)
                      +      |+++|++++ ++++++|+   ++||||.+.|+++|.++|+++|+++|+|++|+ +........+  .|+++.|
T Consensus       126 ~~~~~~~d~~~l~~~~-~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S  201 (391)
T 3dr4_A          126 DPRTFNLDAAKLEALI-TPRTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFS  201 (391)
T ss_dssp             CTTTCSBCGGGSGGGC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred             CccccCcCHHHHHHhc-CCCceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEE
Confidence            5      789999988 78898888   57899999999999999999999999999984 2322222121  3677777


Q ss_pred             C--CCccccCccceEEEEEcC-HHHHHHHHHHhhhhhh--------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHH
Q 013079          247 I--SKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM--------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRA  313 (450)
Q Consensus       247 ~--sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~--------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~  313 (450)
                      +  +|++++ | + ||+++.+ +.+.+.+...+.+...        ..|  ..+....+.+.......+....++.++++
T Consensus       202 ~s~~K~l~~-g-~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~  278 (391)
T 3dr4_A          202 FFGNAIITT-G-E-GGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVV  278 (391)
T ss_dssp             CBTTSSSCC-B-S-CEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             CCCCCcCCc-C-C-eEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5  499875 3 3 4777654 5677777655432111        001  22334444443334455666677778888


Q ss_pred             HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccccccc
Q 013079          314 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       314 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      +++.+.|++.+..+..+..+.            .....+.++++.+++  ......+.+.|...   | |.++.|.....
T Consensus       279 ~~l~~~L~~~g~~~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~---G-I~v~~~~~p~~  342 (391)
T 3dr4_A          279 GWYEQKLARLGNRVTKPHVAL------------TGRHVFWMYTVRLGEGLSTTRDQVIKDLDAL---G-IESRPVFHPMH  342 (391)
T ss_dssp             HHHHHHHGGGTTSEECCCCCT------------TSCCCCSSEEEEECSSCSSCHHHHHHHHHHT---T-CCCEECCCCGG
T ss_pred             HHHHHHhhcCCccccCcCCCC------------CCcceeEEEEEEECCccchhHHHHHHHHHHC---C-CceeecCCccc
Confidence            899999988765544330000            001233467888874  22355677777653   3 66676642211


Q ss_pred             ccccccc--cCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          392 MSCSGSS--TSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       392 ~~~~~~~--~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      . .+...  ....++......    ...|||+++ ...++++++.+.++|.++
T Consensus       343 ~-~~~~~~~~~~~~~~~~~~~----~~~lrl~~~-~~~t~edi~~~~~~l~~~  389 (391)
T 3dr4_A          343 I-MPPYAHLATDDLKIAEACG----VDGLNLPTH-AGLTEADIDRVIAALDQV  389 (391)
T ss_dssp             G-SGGGGGGCCTTCHHHHHHH----HHEEEECCC-TTCCHHHHHHHHHHHHTT
T ss_pred             c-ChhhhhcCcCCChHHHHHH----hCeEEccCC-CCCCHHHHHHHHHHHHHH
Confidence            1 11111  112222222222    467999999 988999999999988765

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.93  E-value=6.7e-24  Score=212.41  Aligned_cols=327  Identities=12%  Similarity=0.062  Sum_probs=221.0

Q ss_pred             cCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEe
Q 013079           70 VME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAA  147 (450)
Q Consensus        70 ~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~  147 (450)
                      .++ .+++.+.+...|.         ....+...++++.||+++|.+.+++|+|   |++|+++++.++ +++||+|+++
T Consensus        11 ~~~v~~a~~~~~~~~~~---------~~~g~~~~~l~~~la~~~~~~~v~~~~g---gt~al~~~~~~l~~~~gd~Vl~~   78 (394)
T 1o69_A           11 GGNELKYIEEVFKSNYI---------APLGEFVNRFEQSVKDYSKSENALALNS---ATAALHLALRVAGVKQDDIVLAS   78 (394)
T ss_dssp             -CCHHHHHHHHHHHTTT---------SCTTHHHHHHHHHHHHHHCCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             CHHHHHHHHHHHHcCCc---------cCCChHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHcCCCCCCEEEEC
Confidence            344 3666666643222         1123678999999999999999999999   999999999998 8999999999


Q ss_pred             CCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC---CceEEEEecCCCCcccccCHHHHHHHHHhcC
Q 013079          148 RTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG---RTKVLYFESISNPTLAVANIPELSRLAHDKG  219 (450)
Q Consensus       148 ~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~---~t~lv~i~~~~NptG~v~~l~~I~~la~~~g  219 (450)
                      .++|+++...+.     ..|.++.+++.+     |+++|++++ ++   ++++|++++   |+|...++++|.++|+++|
T Consensus        79 ~~~~~~~~~~~~-----~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~  149 (394)
T 1o69_A           79 SFTFIASVAPIC-----YLKAKPVFIDCDETYNIDVDLLKLAI-KECEKKPKALILTH---LYGNAAKMDEIVEICKEND  149 (394)
T ss_dssp             SSSCGGGTHHHH-----HTTCEEEEECBCTTSSBCHHHHHHHH-HHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTT
T ss_pred             CCccHHHHHHHH-----HcCCEEEEEEeCCCCCcCHHHHHHHH-hcccCCceEEEEEC---CCCChhhHHHHHHHHHHcC
Confidence            999999988775     268888888754     899999998 54   799999875   8999999999999999999


Q ss_pred             CEEEEeCCCC-CCCCCcc---C-CCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCC-------
Q 013079          220 VTVVVDNTFS-PLVLSPA---R-LGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPT-------  286 (450)
Q Consensus       220 i~livD~~~~-~~~~~~~---~-~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~-------  286 (450)
                      +++|+|++|. ++.+...   . .++|+.+.|.+|.+++.  ++ |+++.+ +++++.+...+.... ...+.       
T Consensus       150 ~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~--~~-G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~g  225 (394)
T 1o69_A          150 IVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTS--GG-GMLIGKNKEKIEKARFYSTQAR-ENCLHYEHLDYG  225 (394)
T ss_dssp             CEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCS--SC-EEEEESCHHHHHHHHHHTBTCC-CSSSSCCCSSCC
T ss_pred             CEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCC--Cc-eEEEECCHHHHHHHHHHHHhcc-ccCccccccccC
Confidence            9999999995 4432221   1 24678888889988754  35 999884 788888876544210 00000       


Q ss_pred             ----chHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079          287 ----MNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE  362 (450)
Q Consensus       287 ----~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~  362 (450)
                          .....+..++..++.+.++.++..++++++.+.|++. .++. +. .....            ..-.+++|.++..
T Consensus       226 ~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~-~~~~-~~-~~~~~------------~~~~~~~i~~~~~  290 (394)
T 1o69_A          226 YNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEY-FSFL-DE-LENSR------------SNRWLSTALINFD  290 (394)
T ss_dssp             CBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-EECC-CC-CTTEE------------CCCSSEEEEESCC
T ss_pred             cccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccc-CC-CCCCc------------ceeEEEEEEecch
Confidence                2233343333335667777888899999999999876 3322 21 10000            0112577888721


Q ss_pred             ---------------------HHHHHHHHHhhccccccccccccccccccccccccccC--CCCCHHHHHhcCCCCCeEE
Q 013079          363 ---------------------EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS--SELNAEEKALAGISAGLVR  419 (450)
Q Consensus       363 ---------------------~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~--~~~~~~~~~~~g~~~~~iR  419 (450)
                                           .....+.+.|...   | |.++.|..|... .|.....  ..++......    ...+|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~~~~~~~~-~p~~~~~~~~~~~~~~~~~----~~~~~  361 (394)
T 1o69_A          291 KNELNACQKDINISQKNITLHPKISKLIEDLKNK---Q-IETRPLWKAMHT-QEVFKGAKAYLNGNSELFF----QKGIC  361 (394)
T ss_dssp             GGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHT---T-CCCBCCCCCGGG-CGGGTTCEEEECSHHHHHH----HHEEE
T ss_pred             hhccccccccccccccccccccCHHHHHHHHHHc---C-CcccccCCcccc-chhhhccCCCCChHHHHHh----cCeEE
Confidence                                 1356777877653   3 677777654321 1111100  0111111111    24567


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHhhhcC
Q 013079          420 MSVGYLGTLDQRWSQFEKALSRMQDSG  446 (450)
Q Consensus       420 iS~g~~~~~~~~i~~l~~al~~~~~~~  446 (450)
                      +..+ ...++++++.+.++|+++.+..
T Consensus       362 ~~~~-~~~t~edi~~~~~~l~~~~~~~  387 (394)
T 1o69_A          362 LPSG-TAMSKDDVYEISKLILKSIKAG  387 (394)
T ss_dssp             ECCC-TTCCHHHHHHHHHHHHHHHC--
T ss_pred             ccCC-CCCCHHHHHHHHHHHHHHHhcc
Confidence            7678 8888899999999998875543

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.93  E-value=8.8e-24  Score=207.73  Aligned_cols=277  Identities=12%  Similarity=0.101  Sum_probs=195.0

Q ss_pred             CChhHHHHHHHHHHHhCCCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH--HHHhCCCcc--CeeEE
Q 013079           97 FNPTVLNLSRQMAALEGTEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRAC--NITTT  171 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~--g~~v~  171 (450)
                      ..+..+++++.+++++|.+. +++|+|   |++|+.+++..++++||+|+++.+.|.++...  +.     ..  |.++.
T Consensus        41 ~~~~~~~l~~~la~~~g~~~~v~~~~~---gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~-----~~~~g~~~~  112 (356)
T 1v72_A           41 TDELTAQVKRKFCEIFERDVEVFLVPT---GTAANALCLSAMTPPWGNIYCHPASHINNDECGAPE-----FFSNGAKLM  112 (356)
T ss_dssp             CSHHHHHHHHHHHHHHTSCCEEEEESC---HHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHH-----HHTTSCEEE
T ss_pred             cchHHHHHHHHHHHHhCCCCcEEEeCC---ccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHH-----HHhCCcEEE
Confidence            46788999999999999654 799999   99999999999889999999999999876644  43     13  77888


Q ss_pred             EeCCC----CHHHHHH-hhhcC-------CceEEEEecCCCCcccc---cCHHHHHHHHHhcCCEEEEeCCCCCC-----
Q 013079          172 FVDIS----DHEMVNS-AIVQG-------RTKVLYFESISNPTLAV---ANIPELSRLAHDKGVTVVVDNTFSPL-----  231 (450)
Q Consensus       172 ~v~~~----d~~~l~~-ai~~~-------~t~lv~i~~~~NptG~v---~~l~~I~~la~~~gi~livD~~~~~~-----  231 (450)
                      .++.+    |+++|++ ++ ++       ++++|++++|+| ||.+   .++++|.++|+++|+++|+|++|..+     
T Consensus       113 ~v~~~~~~~d~~~l~~~~i-~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~  190 (356)
T 1v72_A          113 TVDGPAAKLDIVRLRERTR-EKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL  190 (356)
T ss_dssp             ECCCGGGCCCHHHHHHHTT-SSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHH
T ss_pred             EecCCCCeEcHHHHHHHhh-hcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccC
Confidence            88765    8999999 88 54       689999999987 9995   45889999999999999999998321     


Q ss_pred             CCCccC----CCCeEEEeCCCCccccCccceE-EEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC--cHHH
Q 013079          232 VLSPAR----LGADVVVHSISKFISGGADIIA-GAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP--HLGL  304 (450)
Q Consensus       232 ~~~~~~----~g~di~~~S~sK~~g~~g~~ig-G~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~--~l~~  304 (450)
                      ...+..    .+.|+++.|+||+ +++   +| |+++.++++++.+...+....  .........+......++  ....
T Consensus       191 ~~~~~~~~~~~~~d~~~~s~sK~-g~~---~G~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~  264 (356)
T 1v72_A          191 GCSPAEMTWKAGVDALSFGATKN-GVL---AAEAIVLFNTSLATEMSYRRKRAG--HLSSKMRFLSAQIDAYLTDDLWLR  264 (356)
T ss_dssp             TCCTTTTTGGGTCCEEEECCGGG-TCS---SCEEEEESSGGGHHHHHHHHHHTT--CCCSSTHHHHHHHHHHTSTTHHHH
T ss_pred             CCCHHHhhhhhcCCEEEEecccC-CCc---CccEEEEECHHHHhhHHHHhhccC--chhhhHHHHHHHHHHHHHhhhHHH
Confidence            122322    2678999999999 432   43 688888888887765443111  111112222222222222  2334


Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079          305 RMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV  383 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v  383 (450)
                      ..+++.++++++.+.|+++ +.++..|.                   .++++++.++.     .+.+.|...   | +.+
T Consensus       265 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~-------------------~~~~~~~~~~~-----~~~~~l~~~---g-i~v  316 (356)
T 1v72_A          265 NARKANAAAQRLAQGLEGLGGVEVLGGT-------------------EANILFCRLDS-----AMIDALLKA---G-FGF  316 (356)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTEEEESCC-------------------CSSEEEEEECH-----HHHHHHHHT---T-CBC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcEEccCC-------------------CccEEEEEcCH-----HHHHHHHhc---C-eEE
Confidence            5566778889999999876 44554442                   35588888862     455555432   2 444


Q ss_pred             ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      ..|.                       .+  ++.+||+++ ...+++.++.+.++|.++.
T Consensus       317 ~~g~-----------------------~~--~~~iRi~~~-~~~~~~~i~~~~~~l~~~l  350 (356)
T 1v72_A          317 YHDR-----------------------WG--PNVVRFVTS-FATTAEDVDHLLNQVRLAA  350 (356)
T ss_dssp             BCSS-----------------------SS--TTEEEEECC-TTCCHHHHHHHHHHHHHTC
T ss_pred             eccc-----------------------cC--CCeEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence            4331                       01  378999999 8777777888878777653

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.93  E-value=5.3e-25  Score=217.02  Aligned_cols=293  Identities=14%  Similarity=0.075  Sum_probs=192.8

Q ss_pred             CccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCC--EEEEeCCCchhHHHHHHHhCCCccC
Q 013079           90 FFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGG--HVVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus        90 ~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd--~Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      ...|+  .++...+++++||+++|.+..++++|   |++|+.+++++++.+||  .|+++.+.|........ ... ..|
T Consensus        40 ~~~y~--~~~~~~~l~~~la~~~~~~~~i~~~~---G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~-~~~-~~g  112 (357)
T 3lws_A           40 SDQYG--TGAIIEPFEQKFADVLGMDDAVFFPS---GTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDG-LKE-LHP  112 (357)
T ss_dssp             CEETT--EETTHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTH-HHH-HSS
T ss_pred             ccccc--CChHHHHHHHHHHHHhCCCcEEEecC---cHHHHHHHHHHHhhcCCCcEEEecccceeeeeccch-hhh-ccC
Confidence            34455  25788999999999999988888999   99999999999888888  66666666554432100 000 247


Q ss_pred             eeEEEeCCC----CHHHHHHhhhcCCceEEEEecCCCCc-ccccC---HHHHHHHHHhcCCEEEEeCCCC-----CCCCC
Q 013079          168 ITTTFVDIS----DHEMVNSAIVQGRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTFS-----PLVLS  234 (450)
Q Consensus       168 ~~v~~v~~~----d~~~l~~ai~~~~t~lv~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~~-----~~~~~  234 (450)
                      .++..++.+    |+++|+++.   ++++|++++|+||| |.+.+   +++|+++|+++|+++|+|++|.     .....
T Consensus       113 ~~~~~v~~~~~~~d~~~l~~~~---~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~  189 (357)
T 3lws_A          113 IETILVGAADRLMTLDEIKALP---DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKT  189 (357)
T ss_dssp             CEEEECSCTTSCCCHHHHHTCC---SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC
T ss_pred             cEEEEecCCCCCcCHHHHhcCc---CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCC
Confidence            788887753    889998864   39999999999998 88875   8899999999999999999873     11122


Q ss_pred             ccC--CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079          235 PAR--LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR  312 (450)
Q Consensus       235 ~~~--~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~  312 (450)
                      ...  .+.|+++.|+||++++++   ||++++++++++.+...+.... .........++.. ...++...++++++.++
T Consensus       190 ~~~~~~~~d~~~~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~  264 (357)
T 3lws_A          190 AAEIAGLFDSIYISFYKGLGGIA---GAILAGPAAFCQTARIWKRRYG-GDLISLYPYIVSA-DYYYELRKDRMGQYYEQ  264 (357)
T ss_dssp             HHHHHTTSSEEEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTT-CCCSCCHHHHHHH-HHHHHHHTTCHHHHHHH
T ss_pred             hHHHHhcCCEEEEeccccCCCCc---eEEEEcCHHHHHHHHHHHHHhc-CCcccchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            211  247888999999996554   4899999999988876554110 0111112222211 11222223344556777


Q ss_pred             HHHHHHHHHhCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccccccc
Q 013079          313 ALIFARRMKKLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVSLGYY  388 (450)
Q Consensus       313 ~~~l~~~L~~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs~G~~  388 (450)
                      ++++.+.|++++ .++. .|.                   .++++++.++..  .....+.+.|...   | +.+..|..
T Consensus       265 ~~~l~~~L~~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~---G-i~v~~g~~  321 (357)
T 3lws_A          265 AKQLAEQFNALPGVHTTPEVP-------------------VSNMFHLHFDGQAADISPKLEQVQEET---G-LGFVGYLV  321 (357)
T ss_dssp             HHHHHHHHHTSTTEEEESSSC-------------------SSSEEEEEEESCHHHHHHHHHHHHHHH---C-EESCSCCE
T ss_pred             HHHHHHHHHhCCCCeeccCCC-------------------cceEEEEEecCChHHHHHHHHHHHHhc---C-eEEecccc
Confidence            889999999874 3552 232                   456899998742  2355666666643   3 45554421


Q ss_pred             cccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          389 ETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       389 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .                      +-....+|+++| ........+.+.++++++.
T Consensus       322 ~----------------------~~~~~~~r~~i~-~~~~~~~~~~l~~al~~l~  353 (357)
T 3lws_A          322 D----------------------KDGYCSTEISVG-DAYGELDQQTRDAGFARLR  353 (357)
T ss_dssp             E----------------------CSSEEEEEEEBC-TTGGGSCHHHHHHHHHHHH
T ss_pred             c----------------------CCCceEEEEEec-chhhhcCHHHHHHHHHHHH
Confidence            0                      001357999999 7544444455555555554

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.93  E-value=6e-25  Score=219.97  Aligned_cols=286  Identities=14%  Similarity=0.081  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHhC-------C-CeEEEecChHHHHHHHHHHHHHhccCCC----EEEEeCCCchhHHHHHHHhCCCccCee
Q 013079          102 LNLSRQMAALEG-------T-EAAYCTASDKAGMSAISSVLMQLCSSGG----HVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus       102 ~~l~~~iA~l~g-------~-~~~~~tsg~~~gt~ai~~al~~l~~~gd----~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      .++|+.||++++       . +++++|+|   +++++++++.+++++||    +|++++|+|+++...+.     ..|.+
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G---~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~-----~~g~~  142 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTG---STQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETT-----YVRSG  142 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEH---HHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHH-----TTCBT
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCC---hHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHH-----HcCCe
Confidence            789999999886       3 47999999   99999999999999999    99999999999988875     25666


Q ss_pred             EEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCcc--CCCCeEEEeCC
Q 013079          170 TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPA--RLGADVVVHSI  247 (450)
Q Consensus       170 v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~--~~g~di~~~S~  247 (450)
                      +..++.+ .+.++    .+++++|++++||||||.+.+  +|++.++.+++++|+|++|..-...+.  ..+.+++++|+
T Consensus       143 ~~~~~~d-~~~l~----~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~~~~~~i~~~S~  215 (391)
T 3bwn_A          143 MYKWEGD-AWGFD----KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTF  215 (391)
T ss_dssp             TEEEEEE-STTCC----CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCCCBCCSEEEEEH
T ss_pred             EEEecCC-HHHcC----CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCccccCCCCeEEEEec
Confidence            6555542 22222    357999999999999999986  454422233499999999842111122  23678999999


Q ss_pred             CCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-----------CCcHHHHHHHHHHHHHH
Q 013079          248 SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER-----------IPHLGLRMKEHCHRALI  315 (450)
Q Consensus       248 sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-----------~~~l~~~~~~~~~~~~~  315 (450)
                      ||.+|++|+|+ ||++. ++++++.+...+... ....+.+.+.++..++..           .+++....+.+.++++.
T Consensus       216 SK~~g~~GlRi-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (391)
T 3bwn_A          216 SKITGHAGSRI-GWALVKDKEVAKKMVEYIIVN-SIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEK  293 (391)
T ss_dssp             HHHHSCGGGCE-EEEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCccce-EEEEecCHHHHHHHHHHhccc-ccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999 99986 888988887765521 123344445444444432           34466666778899999


Q ss_pred             HHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccc
Q 013079          316 FARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC  394 (450)
Q Consensus       316 l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~  394 (450)
                      +.+.|++++. .+..|. .....  +...   .....|.++++.+++.+   .+...+..   .| +.+..|+.+     
T Consensus       294 l~~~L~~~~~~~~~~p~-~~~~~--f~~~---~~~~~g~~~~~~~~~~~---~~~~~l~~---~g-V~v~pg~~f-----  355 (391)
T 3bwn_A          294 LREVVKESDAFTLPKYP-EAFCN--YFGK---SLESYPAFAWLGTKEET---DLVSELRR---HK-VMSRAGERC-----  355 (391)
T ss_dssp             HHHHHHTCSSEECCCCC-CEEET--TTTE---EECCCCSEEEEEESSSC---CHHHHHHH---TT-EECEEGGGG-----
T ss_pred             HHHHHHhCCCcccccCC-ccccc--cccc---cCCCcceEEEecCCcHH---HHHHHHHH---CC-EEEccCCCC-----
Confidence            9999998742 332221 00000  0000   00023558899997422   22333332   22 566666543     


Q ss_pred             cccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          395 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       395 ~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                       |..++.||||++ .  .++.++.+.++|.++
T Consensus       356 -----------------g~~~~~iRis~~-~--~~e~i~~~~~~L~~~  383 (391)
T 3bwn_A          356 -----------------GSDKKHVRVSML-S--REDVFNVFLERLANM  383 (391)
T ss_dssp             -----------------TCCTTEEEEESC-S--CHHHHHHHHHHHHSC
T ss_pred             -----------------CCCCCEEEEEec-C--CHHHHHHHHHHHHHH
Confidence                             112578999999 5  455556666666554

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.93  E-value=1.1e-24  Score=217.75  Aligned_cols=216  Identities=15%  Similarity=0.146  Sum_probs=156.0

Q ss_pred             ChhHHHHHHHHHHHh---C-----CCeEEE--ecChHHHHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhCCCc
Q 013079           98 NPTVLNLSRQMAALE---G-----TEAAYC--TASDKAGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRA  165 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~---g-----~~~~~~--tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~  165 (450)
                      .+...++++.||+++   +     .+.+++  |+|   |++|++++++.+  +.+||+|+++.|+|+++...+.     .
T Consensus        68 ~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g---~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~-----~  139 (396)
T 2q7w_A           68 IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG---GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFN-----S  139 (396)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH---HHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHH-----H
T ss_pred             CCCCHHHHHHHHHHHhcCCCCccccccEEEEeccc---chhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----H
Confidence            344678899999887   2     456777  999   999999998765  3689999999999999988775     3


Q ss_pred             cCeeEEEeCC---C----CHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          166 CNITTTFVDI---S----DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       166 ~g~~v~~v~~---~----d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                      .|.++..++.   +    |++++++++.+  ++++++++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+
T Consensus       140 ~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~  219 (396)
T 2q7w_A          140 AGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFAR  219 (396)
T ss_dssp             TTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSS
T ss_pred             cCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccC
Confidence            5778877776   3    89999999832  24788889999999999975   56899999999999999999966544


Q ss_pred             C------ccC-C----CCeEEEeCCCCccccCccceEEEEEc---CHH----HHHHHHHHhhhhhhccC-CCchHHHHHH
Q 013079          234 S------PAR-L----GADVVVHSISKFISGGADIIAGAVCG---PAN----LVNSMMDLHQGALMLLG-PTMNPKVAFE  294 (450)
Q Consensus       234 ~------~~~-~----g~di~~~S~sK~~g~~g~~igG~l~~---~~~----~~~~l~~~~~~~~~~~g-~~~~~~~a~~  294 (450)
                      .      +.. +    +.++++.|+||.+|++|+|+ ||++.   +++    +++.+......  ...+ +.+.+.++..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~  296 (396)
T 2q7w_A          220 GLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERV-GACTLVAADSETVDRAFSQMKAAIRA--NYSNPPAHGASVVAT  296 (396)
T ss_dssp             CHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHT--TTSSCCHHHHHHHHH
T ss_pred             CccchhHHHHHHHhcCCcEEEEEecccccccccccc-ceEEEEcCCHHHHHHHHHHHHHHHhh--ccCCCCcHHHHHHHH
Confidence            2      111 1    46789999999999999998 88875   554    44444332221  1222 3333333333


Q ss_pred             HHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          295 LSERI-------PHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       295 ~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      ++...       +++....+++.++++.+.+.|++++
T Consensus       297 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  333 (396)
T 2q7w_A          297 ILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKG  333 (396)
T ss_dssp             HHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTT
T ss_pred             HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33322       2333444567888899999998875

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.93  E-value=5.9e-24  Score=214.39  Aligned_cols=311  Identities=17%  Similarity=0.190  Sum_probs=209.2

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ....+++++.+++++|.+..++++|   |++|+++++.++ +++||+|+++.++|+++...+.     ..|.++.+++.+
T Consensus        41 ~~l~~~l~~~la~~~g~~~~i~~~~---gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~  112 (418)
T 2c81_A           41 ESMERKFAKAFADFNGVPYCVPTTS---GSTALMLALEALGIGEGDEVIVPSLTWIATATAVL-----NVNALPVFVDVE  112 (418)
T ss_dssp             CCHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBC
T ss_pred             HHHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHH-----HcCCEEEEEecC
Confidence            4558999999999999998999999   999999999998 8999999999999999988775     368888888754


Q ss_pred             ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-CCccCCC--CeEEEeCC
Q 013079          177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-LSPARLG--ADVVVHSI  247 (450)
Q Consensus       177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~~~~~~g--~di~~~S~  247 (450)
                            |+++|++++ ++++++|++   +||||.+.++++|.++|+++|+++|+|++|..+. ++...++  .|+++.|+
T Consensus       113 ~~~~~~d~~~l~~~i-~~~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~  188 (418)
T 2c81_A          113 ADTYCIDPQLIKSAI-TDKTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSC  188 (418)
T ss_dssp             TTTCSBCHHHHGGGC-CTTEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEEC
T ss_pred             CCCCCcCHHHHHHhh-CCCCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEec
Confidence                  899999999 778999885   4689999999999999999999999999994443 2221221  35666666


Q ss_pred             --CCccccCccceEEEEEc-CHHHHHHHHHHhhhhhh-----------cc---------C--CCchHHHHHHHHccCCcH
Q 013079          248 --SKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM-----------LL---------G--PTMNPKVAFELSERIPHL  302 (450)
Q Consensus       248 --sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~-----------~~---------g--~~~~~~~a~~~~~~~~~l  302 (450)
                        ||++++ | +. |+++. ++++++.+...+.....           ..         |  ..+....++.....++.+
T Consensus       189 s~~K~~~~-g-~~-g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~  265 (418)
T 2c81_A          189 QQGKVLTA-G-EG-GIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL  265 (418)
T ss_dssp             CTTSSSCS-S-SC-EEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH
T ss_pred             cCCcccCC-C-Ce-EEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH
Confidence              999997 6 64 99888 47888777665432110           00         0  002233333333345567


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC----HHHHHHHHHHhhcccc
Q 013079          303 GLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQ  377 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~----~~~~~~~~~~l~~~~~  377 (450)
                      ....++..++++++.+.|++++ ..+..+.  ....           ...-.++.|.++.    ......+.+.|...  
T Consensus       266 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  330 (418)
T 2c81_A          266 DDKNAIREKNAMFLNDALSKIDGIKVMKRP--PQVS-----------RQTYYGYVFRFDPVKFGGLNADQFCEILREK--  330 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTEEECCCC--TTEE-----------ECCCSEEEEEECGGGTTTCCHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcccCCCC--CCCc-----------ccccEEEEEEEccccccccCHHHHHHHHHHc--
Confidence            7777777888889999998774 3443221  0000           0011366677762    11255677777652  


Q ss_pred             ccccc---cccccccccccccccccC------------------CCCCHHHHHhcCCCCCeEEEEeCCCCC-HHHHHHHH
Q 013079          378 FGFMA---VSLGYYETLMSCSGSSTS------------------SELNAEEKALAGISAGLVRMSVGYLGT-LDQRWSQF  435 (450)
Q Consensus       378 ~g~i~---vs~G~~~s~~~~~~~~~~------------------~~~~~~~~~~~g~~~~~iRiS~g~~~~-~~~~i~~l  435 (450)
                      +| +.   ++.|..+.- ..+.....                  ..++..+..    ..+.||||++ ... ++++++.+
T Consensus       331 ~g-I~~~~v~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~-~~~gt~edi~~~  403 (418)
T 2c81_A          331 LN-MGTFYLHPPYLPVH-KNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERA----SGQSIVIHHA-ILLAEPSHLSLL  403 (418)
T ss_dssp             HT-CCTTTEECCCCCGG-GCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH----HHHEEEEEGG-GGGSCHHHHHHH
T ss_pred             CC-CCcccccccccccc-cCchhcccccccccccccccccccccCCChHHHHH----HhCEEEecCC-ccCCCHHHHHHH
Confidence            23 56   666653211 00100000                  011111111    1368999998 877 88888888


Q ss_pred             HHHHHHhhhc
Q 013079          436 EKALSRMQDS  445 (450)
Q Consensus       436 ~~al~~~~~~  445 (450)
                      .++|.++.+.
T Consensus       404 ~~~l~~~~~~  413 (418)
T 2c81_A          404 VDAVAELARK  413 (418)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8888876543

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=3.8e-24  Score=214.53  Aligned_cols=307  Identities=19%  Similarity=0.171  Sum_probs=202.9

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .+...++++.+|+++|.+.+++++|   |++|+.+++.++ +++||+|+++.++|+++...+.     ..|.++.+++.+
T Consensus        62 ~~~~~~l~~~la~~~~~~~~v~~~~---Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~g~~~~~~~~~  133 (399)
T 2oga_A           62 GPELEGFEAEFAAYCETDHAVGVNS---GMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVS-----ATGATPVPVEPH  133 (399)
T ss_dssp             SHHHHHHHHHHHHHTTSSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECBC
T ss_pred             chhHHHHHHHHHHHHCCCeEEEecC---HHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHH-----HCCCEEEEEecC
Confidence            4778999999999999999999999   999999999998 8999999999999999887775     368888887643


Q ss_pred             ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCccCCC--CeEEEeCC
Q 013079          177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVHSI  247 (450)
Q Consensus       177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~~~g--~di~~~S~  247 (450)
                            |+++|++++ ++++++|+   ++||||.+.|+++|.++|+++|+++|+|++|+.. ..+...++  .|+++.|+
T Consensus       134 ~~~~~~d~~~l~~~i-~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~  209 (399)
T 2oga_A          134 EDHPTLDPLLVEKAI-TPRTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSF  209 (399)
T ss_dssp             SSSSSBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEEC
T ss_pred             CCCCCcCHHHHHHhc-CCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeC
Confidence                  799999999 77888887   5789999999999999999999999999999433 22333334  69999999


Q ss_pred             --CCccccCccceEEEEEcC-HHHHHHHHHHhhhhhh------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079          248 --SKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       248 --sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l  316 (450)
                        +|+++++| +. |+++.+ +++++.+...+.....      ..|  ..++...++++...++.+....++..++++++
T Consensus       210 ~~sK~~~~~G-~~-g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l  287 (399)
T 2oga_A          210 YPGKNLGCFG-DG-GAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEY  287 (399)
T ss_dssp             CTTSSSCCSS-CC-EEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCCccCCcCC-ce-EEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              69999878 65 888775 7888877665432100      001  12344444444444555555566667777888


Q ss_pred             HHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          317 ARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       317 ~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      .+.|++++ ..+.  ..++.              +.+.++.|.+... ....+.+.|...   | +.++.+....+-..+
T Consensus       288 ~~~L~~~~g~~~~--~~~~~--------------~~~~~~~~~~~~~-~~~~l~~~L~~~---g-I~v~~~~~~~~~~~~  346 (399)
T 2oga_A          288 LSGLAGLPGIGLP--VTAPD--------------TDPVWHLFTVRTE-RRDELRSHLDAR---G-IDTLTHYPVPVHLSP  346 (399)
T ss_dssp             HHHTTTCTTCBCC--CCCTT--------------EECCCSSEEEECS-SHHHHHHHHHHT---T-BCCBCSCSSCGGGSH
T ss_pred             HHHhccCCCcccc--CCCCC--------------CcceeEEEEEECC-CHHHHHHHHHHC---C-CceecCCCCccccch
Confidence            88887763 3332  11110              1111222333211 244566666542   3 455443210000000


Q ss_pred             cccc----CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          396 GSST----SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       396 ~~~~----~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      ....    ....+.....    ..+.||||++ ...+++.++.+.++|.++.+
T Consensus       347 ~~~~~~~~~~~~p~~~~~----~~~~lRi~~~-~~~t~edi~~~~~~l~~~~~  394 (399)
T 2oga_A          347 AYAGEAPPEGSLPRAESF----ARQVLSLPIG-PHLERPQALRVIDAVREWAE  394 (399)
T ss_dssp             HHHTTSCCTTSCHHHHHH----HHHEEEECCS-TTCCHHHHHHHHHHHHHHHH
T ss_pred             hhcccCCCCCCChhHHHH----HhCEEEccCC-CCCCHHHHHHHHHHHHHHHH
Confidence            0000    0000000000    1367999999 87788888888888876543

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=222.21  Aligned_cols=322  Identities=11%  Similarity=0.047  Sum_probs=220.5

Q ss_pred             ccccccCccccCC--HHHHHHhhcCCCCCCCCCccccCC---CChhHHHHHHHHHHHhCCC---eEEE-ecChHHHHHHH
Q 013079           60 MSIEASATFTVME--PETMRRMFAGELGPDRDFFIYSRH---FNPTVLNLSRQMAALEGTE---AAYC-TASDKAGMSAI  130 (450)
Q Consensus        60 ~pi~~att~~~~~--~~~~~~~~~~~~~n~~~~~~y~r~---~~~~~~~l~~~iA~l~g~~---~~~~-tsg~~~gt~ai  130 (450)
                      .-++.+|+.+.|.  +++|.+.+...++||++.+..+..   ....++++|+.+++++|++   .++| |+|   ||+++
T Consensus        14 ~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~---~T~a~   90 (377)
T 3e77_A           14 GTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGG---GCGQF   90 (377)
T ss_dssp             -CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSH---HHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCc---hHHHH
Confidence            4577778877775  489999998888999887554433   4567899999999999974   3788 578   99999


Q ss_pred             HHHHHHhccC--CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcc
Q 013079          131 SSVLMQLCSS--GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTL  203 (450)
Q Consensus       131 ~~al~~l~~~--gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG  203 (450)
                      ++++.+++.+  ||+|++...++.+..  +...+.+ .|..+++++.+     ++++++.++ +++|++|++.+..|.||
T Consensus        91 n~a~~~l~~~~~Gd~v~~~~~g~~~~~--~~~~a~~-~G~~~~~~~~~~~~~~~~~~~~~~i-~~~t~lV~~~h~et~tG  166 (377)
T 3e77_A           91 SAVPLNLIGLKAGRCADYVVTGAWSAK--AAEEAKK-FGTINIVHPKLGSYTKIPDPSTWNL-NPDASYVYYCANETVHG  166 (377)
T ss_dssp             HHHHHHHGGGSTTCEEEECCCSHHHHH--HHHHHTT-TSEEEECSCCCSSSCSCCCGGGCCC-CTTCSCEEEESEETTTT
T ss_pred             HHHHHhccCCCCCCeEEEEECCHHHHH--HHHHHHH-hCCceEEeccCCCcCCCCChHHhcc-CCCccEEEEeCccCchh
Confidence            9999999865  899988887776542  2244454 68888776653     456666667 78999999988888899


Q ss_pred             cccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH--------
Q 013079          204 AVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM--------  273 (450)
Q Consensus       204 ~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~--------  273 (450)
                      .++|+     +|+++|+++|+|.+|  +...++..+++  +++.|.||++||+|  + |+++.++++++.+.        
T Consensus       167 ~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G--~-g~l~~~~~~l~~~~~~~p~~~~  236 (377)
T 3e77_A          167 VEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAG--V-TVVIVRDDLLGFALRECPSVLE  236 (377)
T ss_dssp             EECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTT--C-EEEEEETTSCSCCCTTSCGGGC
T ss_pred             eEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCc--c-EEEEEcHHHHhhccCCCCchhh
Confidence            99998     478899999999998  66677777766  58899999999888  5 77766554432111        


Q ss_pred             --HHhhhhhhccCCCchHHHHHH---HHccC-C--cHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHH
Q 013079          274 --DLHQGALMLLGPTMNPKVAFE---LSERI-P--HLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSM  344 (450)
Q Consensus       274 --~~~~~~~~~~g~~~~~~~a~~---~~~~~-~--~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~  344 (450)
                        ......  ...++++....+.   ++..+ +  .++.+.++..++++++.+.|++++ +.+ .|.   .+.+      
T Consensus       237 ~~~~~~~~--~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~-~~~---~~~~------  304 (377)
T 3e77_A          237 YKVQAGNS--SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV-CPV---EPQN------  304 (377)
T ss_dssp             HHHHHTTT--TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEE-CCS---CGGG------
T ss_pred             HHHHhhcC--CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCcee-cCC---CHHH------
Confidence              111100  1122333222222   22211 1  255566777889999999999874 443 221   1110      


Q ss_pred             hccCCCcCcEEEEEeCC----HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013079          345 ANKEYGFGGLLCLDMET----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM  420 (450)
Q Consensus       345 ~~~~~g~g~~~~~~l~~----~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRi  420 (450)
                           ..+.+++|.+++    .+....|++.+..   .| |.+..|..                         ..+.+|+
T Consensus       305 -----rs~~ivsf~~~~~~~~~~~~~~~l~~l~~---~G-i~~~~g~~-------------------------~~g~iRi  350 (377)
T 3e77_A          305 -----RSKMNIPFRIGNAKGDDALEKRFLDKALE---LN-MLSLKGHR-------------------------SVGGIRA  350 (377)
T ss_dssp             -----BCSSEEEEEESSTTCCHHHHHHHHHHHHH---TT-EESCBCCT-------------------------TTCSEEE
T ss_pred             -----cCCcEEEEEcCCCCCchhHHHHHHHHHHH---CC-cEEeCCCC-------------------------cCCEEEE
Confidence                 134479999985    2211457776654   23 44333310                         0256999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          421 SVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       421 S~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      |++ ..++.+.++.|.++|+++.+.
T Consensus       351 S~~-~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          351 SLY-NAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             ECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred             ECC-CCCCHHHHHHHHHHHHHHHHH
Confidence            999 889999999999999987653

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.93  E-value=1.3e-25  Score=223.43  Aligned_cols=320  Identities=10%  Similarity=0.047  Sum_probs=200.9

Q ss_pred             cccCccccCCH-HHHHHhhcCCCCCCCCCcc---ccCCCChhHHHHHHHHHHHhCCC---eEEE-ecChHHHHHHHHHHH
Q 013079           63 EASATFTVMEP-ETMRRMFAGELGPDRDFFI---YSRHFNPTVLNLSRQMAALEGTE---AAYC-TASDKAGMSAISSVL  134 (450)
Q Consensus        63 ~~att~~~~~~-~~~~~~~~~~~~n~~~~~~---y~r~~~~~~~~l~~~iA~l~g~~---~~~~-tsg~~~gt~ai~~al  134 (450)
                      ++++|+..+++ ++|.+.+...++||++.|.   .++.....++++|+.+|+++|++   .++| |+|   ||+++++++
T Consensus        32 ~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~---~T~a~n~ai  108 (386)
T 3qm2_A           32 SSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGG---GRGQFAGVP  108 (386)
T ss_dssp             CSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESC---TTHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCC---chHHHHHHH
Confidence            45666666664 7788778778899988543   35555678899999999999974   4788 689   999999999


Q ss_pred             HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC--------CHHHHHHhhhcCCceEEEEecCCCCcccc-
Q 013079          135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNSAIVQGRTKVLYFESISNPTLAV-  205 (450)
Q Consensus       135 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~--------d~~~l~~ai~~~~t~lv~i~~~~NptG~v-  205 (450)
                      .+++++||+|++...++.+..  +.....+ .| ++++++.+        ++++++.++ +++|++|.+.+..|.||.+ 
T Consensus       109 ~~l~~~gd~v~~~~~~~~~~~--~~~~a~~-~G-~v~~v~~~~~~~G~~~~~~~~~~~l-~~~t~lV~~~h~et~tG~~i  183 (386)
T 3qm2_A          109 LNLLGDKTTADYVDAGYWAAS--AIKEAKK-YC-APQIIDAKITVDGKRAVKPMREWQL-SDNAAYLHYCPNETIDGIAI  183 (386)
T ss_dssp             HHHCTTCCEEEEEESSHHHHH--HHHHHTT-TS-EEEEEECEEEETTEEEECCGGGCCC-CTTCSCEEECSEETTTTEEC
T ss_pred             HhccCCCCeEEEEeCCHHHHH--HHHHHHH-hC-CeEEEecCcccCCCCCCchHHHhhc-CCCCcEEEEECCcCCcCEec
Confidence            999999999876666555543  2233344 68 78777653        456677777 7899999998888888996 


Q ss_pred             cCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH----------
Q 013079          206 ANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM----------  273 (450)
Q Consensus       206 ~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~----------  273 (450)
                      +|+++|.     +|+++++|.+|  +...++..+++  +++.|.||++||+|  + |+++.++++++.+.          
T Consensus       184 ~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G--~-g~l~v~~~~~~~~~~~~p~~~~~~  253 (386)
T 3qm2_A          184 DETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAG--L-TLVIVREDLLGKAHESCPSILDYT  253 (386)
T ss_dssp             CCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTT--E-EEEEEEGGGCSCCCTTSCGGGCHH
T ss_pred             Cchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCc--c-EEEEECHHHHhhhcccCCcHHHHH
Confidence            9999885     79999999998  66677777765  57799999999888  6 88877665532111          


Q ss_pred             HHhh-hhhhccCCCchHHHHHHHHccCC---cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCC
Q 013079          274 DLHQ-GALMLLGPTMNPKVAFELSERIP---HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY  349 (450)
Q Consensus       274 ~~~~-~~~~~~g~~~~~~~a~~~~~~~~---~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~  349 (450)
                      .... +....+.+.........++..+.   .++...++..++++++.+.|++.++... +. +  +.+           
T Consensus       254 ~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~-~~-~--~~~-----------  318 (386)
T 3qm2_A          254 VLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRN-DV-A--QAN-----------  318 (386)
T ss_dssp             HHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEEC-CB-C--GGG-----------
T ss_pred             HHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCccc-CC-C--HHH-----------
Confidence            1100 00001222233222222332221   2455556678888999999988754111 11 0  110           


Q ss_pred             CcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013079          350 GFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD  429 (450)
Q Consensus       350 g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~  429 (450)
                      ...++++|.+++......++..|...   | |.+..|..|                         .+.||+|++ ..+++
T Consensus       319 rs~~iv~f~~~~~~~~~~~~~~L~~~---g-I~~~~g~~~-------------------------~~~iRiS~~-~~~t~  368 (386)
T 3qm2_A          319 RSRMNVPFQLADNTLDKVFLEESFAA---G-LHALKGHRV-------------------------VGGMRASIY-NAMPI  368 (386)
T ss_dssp             BCSSEEEEEESSGGGHHHHHHHHHHT---T-EECCBCCTT-------------------------TCSEEEECC-TTSCH
T ss_pred             cCceEEEEECCCccccHHHHHHHHHC---C-CEEeCCCCC-------------------------cCeEEEEcC-CCCCH
Confidence            13458999998521115677777642   3 444433211                         145999999 99999


Q ss_pred             HHHHHHHHHHHHhhhc
Q 013079          430 QRWSQFEKALSRMQDS  445 (450)
Q Consensus       430 ~~i~~l~~al~~~~~~  445 (450)
                      ++++.|.++|+++.+.
T Consensus       369 edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          369 EGVKALTDFMIDFERR  384 (386)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988653

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.93  E-value=7.8e-25  Score=218.77  Aligned_cols=215  Identities=15%  Similarity=0.131  Sum_probs=156.3

Q ss_pred             hhHHHHHHHHHHHh-C----CCeEEE--ecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALE-G----TEAAYC--TASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~-g----~~~~~~--tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ....++++.+|+++ +    .+.+++  |+|   |++|++++++.+..  +||+|+++.|+|+++...+.     ..|.+
T Consensus        69 ~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g---~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~  140 (394)
T 2ay1_A           69 SGEPEFQKAMGELILGDGLKSETTATLATVG---GTGALRQALELARMANPDLRVFVSDPTWPNHVSIMN-----FMGLP  140 (394)
T ss_dssp             SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEH---HHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHH-----HHTCC
T ss_pred             CCcHHHHHHHHHHHhCCCCCcccEEEEecCC---chhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHH-----HcCCc
Confidence            34578899999886 4    367888  999   99999999987754  89999999999999988775     25677


Q ss_pred             EEEeCC---C----CHHHHHHhhhcC--CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013079          170 TTFVDI---S----DHEMVNSAIVQG--RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS---  234 (450)
Q Consensus       170 v~~v~~---~----d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~---  234 (450)
                      +..++.   +    |++++++++.+.  +++++++++|+||||.+.+   +++|+++|+++|+++|+|++|..+...   
T Consensus       141 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~  220 (394)
T 2ay1_A          141 VQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEE  220 (394)
T ss_dssp             EEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHH
T ss_pred             eEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCccc
Confidence            777765   2    899999988322  4678888999999999976   568899999999999999999665442   


Q ss_pred             ---ccC-C----CCeEEEeCCCCccccCccceEEEEEc---CHHHHHHHHH----HhhhhhhccC-CCchHHHHHHHHcc
Q 013079          235 ---PAR-L----GADVVVHSISKFISGGADIIAGAVCG---PANLVNSMMD----LHQGALMLLG-PTMNPKVAFELSER  298 (450)
Q Consensus       235 ---~~~-~----g~di~~~S~sK~~g~~g~~igG~l~~---~~~~~~~l~~----~~~~~~~~~g-~~~~~~~a~~~~~~  298 (450)
                         +.. +    ..++++.|+||.+|++|+|+ ||++.   ++++++.+..    ... . ...+ +.+.+.++..++..
T Consensus       221 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ri-G~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~a~~~~l~~  297 (394)
T 2ay1_A          221 DAAGTRLIASRIPEVLIAASCSKNFGIYRERT-GCLLALCADAATRELAQGAMAFLNR-Q-TYSFPPFHGAKIVSTVLTT  297 (394)
T ss_dssp             HHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHH-T-TTSSCCCHHHHHHHHHHHS
T ss_pred             chHHHHHHhhcCCCEEEEEeccCCCcCcCCcc-ceEEEEeCCHHHHHHHHHHHHHHHh-h-hcCCCChHHHHHHHHHhcC
Confidence               111 1    34688999999999999998 88876   6665544322    111 1 1222 44444444444332


Q ss_pred             C-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          299 I-------PHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       299 ~-------~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      .       +++....+++.++++++.+.|++++
T Consensus       298 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  330 (394)
T 2ay1_A          298 PELRADWMAELEAVRSGMLRLREQLAGELRDLS  330 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2       2344555667888889999998753

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.93  E-value=5.2e-25  Score=219.11  Aligned_cols=163  Identities=18%  Similarity=0.159  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCC
Q 013079          101 VLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD  177 (450)
Q Consensus       101 ~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d  177 (450)
                      .+.+++.+++++|+   +.+++|+|   |++|+++++.++  +||+|+++.|+|+++...+. ... ..|.++.++  .|
T Consensus        60 ~~~~~~~~a~~~g~~~~~~~~~~~g---gt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~-~~g~~~~~v--~d  130 (374)
T 2aeu_A           60 AEKVNEYGLKHLGGDENDKCVGFNR---TSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCK-IVNAKYFES--DK  130 (374)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESS---HHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHH-HTTCEEEEE--SC
T ss_pred             HHHHHHHHHHHhCCCCcceEEEEcC---hHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHH-HcCcEEEEe--CC
Confidence            35677778888898   78899999   999999999987  89999999998877544332 122 268888888  68


Q ss_pred             HHHHHHhhhcCCceE-EEEecCCCCcc-cccCHHHHHHHHHhcCCEEEEeCCCCCCC----CC--ccCCCCeEEEeCCCC
Q 013079          178 HEMVNSAIVQGRTKV-LYFESISNPTL-AVANIPELSRLAHDKGVTVVVDNTFSPLV----LS--PARLGADVVVHSISK  249 (450)
Q Consensus       178 ~~~l~~ai~~~~t~l-v~i~~~~NptG-~v~~l~~I~~la~~~gi~livD~~~~~~~----~~--~~~~g~di~~~S~sK  249 (450)
                      +++++++  ++++++ |++++|+|||| ...++++|.++|+++|+++|+|++|+.+.    ..  +...++|+++.|+||
T Consensus       131 ~~~l~~~--~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK  208 (374)
T 2aeu_A          131 VGEILNK--IDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDK  208 (374)
T ss_dssp             HHHHHTT--CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTS
T ss_pred             HHHHHhc--CCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcc
Confidence            9999886  578999 99999999999 88999999999999999999999984331    11  444578999999999


Q ss_pred             ccccCccceEEEEEcCHHHHHHHHHHhh
Q 013079          250 FISGGADIIAGAVCGPANLVNSMMDLHQ  277 (450)
Q Consensus       250 ~~g~~g~~igG~l~~~~~~~~~l~~~~~  277 (450)
                      ++++  .++ ||+++++++++.+.....
T Consensus       209 ~l~g--~~~-G~~~~~~~~~~~l~~~~~  233 (374)
T 2aeu_A          209 LMEG--PRG-GLLAGKKELVDKIYIEGT  233 (374)
T ss_dssp             SSSS--CSC-EEEEEEHHHHHHHHHHHH
T ss_pred             cccC--cce-EEEEECHHHHHHHHHhhc
Confidence            9774  455 999999999988876654

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.93  E-value=1.1e-23  Score=207.17  Aligned_cols=288  Identities=14%  Similarity=0.076  Sum_probs=197.8

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH--HHHhCCCcc
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL--LTHFFPRAC  166 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~--~~~~~~~~~  166 (450)
                      |.+++...+..+++++.+++++|.+  .+++|+|   |++|+++++..++++||+|+++.|+|+++...  +.     ..
T Consensus        41 ~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g---~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-----~~  112 (359)
T 1svv_A           41 QHAGYGQDSHCAKAARLIGELLERPDADVHFISG---GTQTNLIACSLALRPWEAVIATQLGHISTHETGAIE-----AT  112 (359)
T ss_dssp             CCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESC---HHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHH-----HT
T ss_pred             ccccccccHHHHHHHHHHHHHhCCCCccEEEeCC---chHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHh-----cC
Confidence            3344556788999999999999864  5899999   99999999999999999999999999988763  32     25


Q ss_pred             CeeEEEeCCC----CHHHHHHhhhcCC-------ceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCC---
Q 013079          167 NITTTFVDIS----DHEMVNSAIVQGR-------TKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFS---  229 (450)
Q Consensus       167 g~~v~~v~~~----d~~~l~~ai~~~~-------t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~---  229 (450)
                      |.++.+++.+    |+++|++++ +++       +++|++++| ||||.+.|   +++|.++|+++|+++|+|++|.   
T Consensus       113 g~~~~~v~~~~~~~d~~~l~~~l-~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~  190 (359)
T 1svv_A          113 GHKVVTAPCPDGKLRVADIESAL-HENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASA  190 (359)
T ss_dssp             TCCEEEECCTTSCCCHHHHHHHH-HHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHH
T ss_pred             CCeeEEEeCCCCeecHHHHHHHH-HHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhh
Confidence            7888888765    699999998 443       899999999 79999998   8899999999999999999982   


Q ss_pred             --CCCCCccC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHH
Q 013079          230 --PLVLSPAR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLG  303 (450)
Q Consensus       230 --~~~~~~~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~  303 (450)
                        ....+...    ...|+++.|++|+.++.|  + |+++.++++++.+...................+.........+.
T Consensus       191 ~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~--~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  267 (359)
T 1svv_A          191 LSSPVNDLTLADIARLTDMFYIGATKAGGMFG--E-ALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFF  267 (359)
T ss_dssp             HTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC--E-EEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHH
T ss_pred             hcCCCcchhhhhhhhcCCEEEEecccCCCCCc--e-EEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHH
Confidence              22222221    257899999999866444  4 88888888877665432211001111111122222111223345


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079          304 LRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV  383 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v  383 (450)
                      ...+++.++++++.+.|+..+.++..|.                   .+.++++.++     ..+.+.|...  +| +.+
T Consensus       268 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~-----~~~~~~l~~~--~g-i~v  320 (359)
T 1svv_A          268 ELGAHSNKMAAILKAGLEACGIRLAWPS-------------------ASNQLFPILE-----NTMIAELNND--FD-MYT  320 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCBSSCC-------------------SSSEECBEEE-----HHHHHHHTTT--EE-CEE
T ss_pred             HHHHHHHHHHHHHHHHhccCCeEEccCC-------------------ccceEEEEcC-----HHHHHHHHHh--cC-EEE
Confidence            5667778889999999944344443332                   3457777775     2456666542  23 333


Q ss_pred             ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                       .|.      .                 ...++.||||++ ...+++.++.+.++|.++.
T Consensus       321 -~~~------~-----------------~~~~~~iRi~~~-~~~~~~~i~~~~~~l~~~~  355 (359)
T 1svv_A          321 -VEP------L-----------------KDGTCIMRLCTS-WATEEKECHRFVEVLKRLV  355 (359)
T ss_dssp             -EEE------E-----------------TTTEEEEEEECC-TTCCHHHHHHHHHHHHHC-
T ss_pred             -Eec------c-----------------cCCCceEEEEcc-CcCCHHHHHHHHHHHHHHH
Confidence             110      0                 001468999999 7777777888877777653

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.93  E-value=4.1e-24  Score=215.86  Aligned_cols=289  Identities=13%  Similarity=0.123  Sum_probs=192.3

Q ss_pred             CCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHhCCC---
Q 013079           96 HFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFFPR---  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~~~---  164 (450)
                      +..+..++++++|++++|.+.++||+|   |++|++++++.+..       +| ++||+.++.|++...........   
T Consensus        96 ~~~~~~~~l~~~la~~~g~~~v~~~~g---gteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~  172 (420)
T 2pb2_A           96 FTNEPALRLGRKLIDATFAERVLFMNS---GTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKY  172 (420)
T ss_dssp             SCCHHHHHHHHHHHHHSSCSEEEEESS---HHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHH
T ss_pred             cCCHHHHHHHHHHHhhCCCCeEEEeCC---HHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccc
Confidence            357889999999999999999999999   99999999998765       67 48999999998764332111110   


Q ss_pred             -----ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccc----cCHHHHHHHHHhcCCEEEEeCCCCCCCCC-
Q 013079          165 -----ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAV----ANIPELSRLAHDKGVTVVVDNTFSPLVLS-  234 (450)
Q Consensus       165 -----~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v----~~l~~I~~la~~~gi~livD~~~~~~~~~-  234 (450)
                           .....+.+++..|+++|++++ ++++++|++++++|++|.+    .++++|.++|+++|+++|+||+|.++... 
T Consensus       173 ~~~~~p~~~~~~~~~~~d~~~le~~i-~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g  251 (420)
T 2pb2_A          173 SDGFGPKPADIIHVPFNDLHAVKAVM-DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTG  251 (420)
T ss_dssp             HTTSSSCCSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred             cccCCCCCCCeEEecCCCHHHHHHHh-ccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCC
Confidence                 011236677777999999999 7889999999999988862    46899999999999999999999655432 


Q ss_pred             ------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHH
Q 013079          235 ------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKE  308 (450)
Q Consensus       235 ------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~  308 (450)
                            ......|++  |+||.++ +|.++ |+++.++++++.+..... .....++.+.+.++..++..++. ....++
T Consensus       252 ~~~~~~~~~~~~dii--t~sK~l~-~G~~i-G~~~~~~~l~~~l~~~~~-~~t~~~~~~~~aa~~a~L~~~~~-~~~~~~  325 (420)
T 2pb2_A          252 DLFAYMHYGVTPDIL--TSAKALG-GGFPV-SAMLTTQEIASAFHVGSH-GSTYGGNPLACAVAGAAFDIINT-PEVLQG  325 (420)
T ss_dssp             SSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECHHHHTTCC-----CCEECCCHHHHHHHHHHHHHHSS-HHHHHH
T ss_pred             cHHHHHhcCCCCCeE--Eeccccc-CCCce-EEEEEhHHHHHhhcCCCc-CcccCcCHHHHHHHHHHHHHHHh-ccHHHH
Confidence                  112346877  5789999 68898 888888887766543211 11233343444444333433333 345566


Q ss_pred             HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--HHHHHHHHhhccccccccccccc
Q 013079          309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--KANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      ..++++++.+.|+++...  +|...             ...+.|.+++|+++...  ....+.+.|...   | +.+..+
T Consensus       326 ~~~~~~~l~~~L~~~~~~--~~~~~-------------~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~---G-i~v~~~  386 (420)
T 2pb2_A          326 IHTKRQQFVQHLQAIDEQ--FDIFS-------------DIRGMGLLIGAELKPKYKGRARDFLYAGAEA---G-VMVLNA  386 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCCEE-------------EEEEETTEEEEEECGGGTTCHHHHHHHHHHT---T-EECEES
T ss_pred             HHHHHHHHHHHHHHHHhc--CCCeE-------------EEEecceEEEEEECCCchHHHHHHHHHHHHC---C-CEEEeC
Confidence            778888888888764100  01000             00135779999997431  255677776642   3 333322


Q ss_pred             cccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          387 YYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       387 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                                 .++.||||++ ...+++.++.+.++|.+
T Consensus       387 ---------------------------~~~~iRl~~~-~~~t~eei~~~~~~l~~  413 (420)
T 2pb2_A          387 ---------------------------GADVMRFAPS-LVVEEADIHEGMQRFAQ  413 (420)
T ss_dssp             ---------------------------STTEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred             ---------------------------CCCEEEEECC-CCCCHHHHHHHHHHHHH
Confidence                                       0368999987 55555555555555544

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.93  E-value=4.5e-24  Score=214.70  Aligned_cols=216  Identities=13%  Similarity=0.119  Sum_probs=156.0

Q ss_pred             hhHHHHHHHHHHHh-C-------CCeEEE--ecChHHHHHHHHHHH--HHhccCCCEEEEeCCCchhHHHHHHHhCCCcc
Q 013079           99 PTVLNLSRQMAALE-G-------TEAAYC--TASDKAGMSAISSVL--MQLCSSGGHVVAARTLYGGTHALLTHFFPRAC  166 (450)
Q Consensus        99 ~~~~~l~~~iA~l~-g-------~~~~~~--tsg~~~gt~ai~~al--~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~  166 (450)
                      ....++++.+|+++ +       .+.+++  |+|   |++|+++++  ..++.+||+|+++.|+|+++...+.     ..
T Consensus        73 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g---~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~-----~~  144 (412)
T 1yaa_A           73 TGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS---GTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFE-----NQ  144 (412)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHH-----TT
T ss_pred             CCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc---hHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHH-----Hc
Confidence            34577888888887 3       467899  999   999999884  3445789999999999999988775     35


Q ss_pred             CeeEEEeCC-------CCHHHHHHhhhcC--CceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          167 NITTTFVDI-------SDHEMVNSAIVQG--RTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       167 g~~v~~v~~-------~d~~~l~~ai~~~--~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                      |.++..++.       .|+++|++++.+.  .+.++++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+.
T Consensus       145 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~  224 (412)
T 1yaa_A          145 GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATG  224 (412)
T ss_dssp             TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSS
T ss_pred             CceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCC
Confidence            777777765       1899999988332  2455656999999999975   668899999999999999999665432


Q ss_pred             -------cc-C---C-C---CeEEEeCCCCccccCccceEEEEE--c-----CHH----HHHHHHHHhhhhhhccCCCch
Q 013079          235 -------PA-R---L-G---ADVVVHSISKFISGGADIIAGAVC--G-----PAN----LVNSMMDLHQGALMLLGPTMN  288 (450)
Q Consensus       235 -------~~-~---~-g---~di~~~S~sK~~g~~g~~igG~l~--~-----~~~----~~~~l~~~~~~~~~~~g~~~~  288 (450)
                             +. .   . .   .++++.|+||.+|++|+|+ ||++  +     +++    +++.+....... ...++.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glri-G~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~  302 (412)
T 1yaa_A          225 DLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV-GCFHLALTKQAQNKTIKPAVTSQLAKIIRSE-VSNPPAYG  302 (412)
T ss_dssp             CHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE-EEEEEECCSCTTHHHHHHHHHHHHHHHHHTT-TSSCCHHH
T ss_pred             cccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcc-eEEEEEecCCCCCHHHHHHHHHHHHHHHhhc-cCCCChHH
Confidence                   11 1   1 2   5789999999999889998 8887  7     555    666665532211 11223334


Q ss_pred             HHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          289 PKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       289 ~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      +.++..++...       +++....+++.++++++.+.|++++
T Consensus       303 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  345 (412)
T 1yaa_A          303 AKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG  345 (412)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            44443344332       2355556677888999999998865

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.93  E-value=4.7e-25  Score=220.79  Aligned_cols=281  Identities=12%  Similarity=0.148  Sum_probs=190.5

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc------C-CCEEEEeCCCchhHHH-HHHHhCCCccCe
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS------S-GGHVVAARTLYGGTHA-LLTHFFPRACNI  168 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~------~-gd~Vi~~~~~y~~~~~-~~~~~~~~~~g~  168 (450)
                      ..+..+++++.|++++|.+.+++|+|   |++|+.++++.+..      + +++|++.++.|++... .+. .    .|.
T Consensus        80 ~~~~~~~l~~~la~~~g~~~v~~~~g---g~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~----~g~  151 (397)
T 2ord_A           80 WNRPQMELAELLSKNTFGGKVFFANT---GTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT-A----TGQ  151 (397)
T ss_dssp             EEHHHHHHHHHHHHTTTSCEEEEESS---HHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH-H----SBC
T ss_pred             CCHHHHHHHHHHHHhcCCCeEEEeCC---HHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh-c----cCC
Confidence            46788999999999999999999999   99999999988753      5 4789999999976443 332 1    232


Q ss_pred             e------------EEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccc-c---cCHHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          169 T------------TTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLA-V---ANIPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       169 ~------------v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~-v---~~l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                      +            +..++.+|+++|++++ ++++++|++++|+||||. +   .++++|.++|+++|+++|+|++|+++.
T Consensus       152 ~~~~~~~~p~~~~~~~~~~~d~~~l~~~l-~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~  230 (397)
T 2ord_A          152 PKYQKPFEPLVPGFEYFEFNNVEDLRRKM-SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMG  230 (397)
T ss_dssp             HHHHGGGCSCCTTEEEECTTCHHHHHHHC-CTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             hhhccccCCCCCCeeEecCCCHHHHHHHh-hcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCc
Confidence            2            6777778999999999 788999999999999999 3   578999999999999999999996554


Q ss_pred             CC--cc---CCC--CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHH
Q 013079          233 LS--PA---RLG--ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLR  305 (450)
Q Consensus       233 ~~--~~---~~g--~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~  305 (450)
                      ..  +.   .++  .|++  |+||.++ +|.|+ |+++.+++++ .+..... .....++.+.+.++..++...+. ...
T Consensus       231 ~~g~~~~~~~~~~~~d~~--s~sK~~~-~G~r~-G~~~~~~~~~-~l~~~~~-~~~~~~~~~~~~a~~~~l~~~~~-~~~  303 (397)
T 2ord_A          231 RTGKLFAYQKYGVVPDVL--TTAKGLG-GGVPI-GAVIVNERAN-VLEPGDH-GTTFGGNPLACRAGVTVIKELTK-EGF  303 (397)
T ss_dssp             TTSSSSHHHHHTCCCSEE--EECGGGG-TTSCC-EEEEECSTTC-CCCTTSS-CCSSTTCHHHHHHHHHHHHHHTS-TTH
T ss_pred             cCccchhhhhhCCCCCee--eeccccC-CCcCe-EEEEEchHhc-ccCCCCc-CCCCCCCHHHHHHHHHHHHHHHh-CCH
Confidence            32  11   123  6766  5789999 68898 8888777665 4432111 11122233333333333332222 334


Q ss_pred             HHHHHHHHHHHHHHHHhCC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccc
Q 013079          306 MKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV  383 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~v  383 (450)
                      .+++.++++++.+.|++.+  ..+...                 ..+.|++++|.++.......+.+.|...   | +.+
T Consensus       304 ~~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~~l~~~l~~~---g-i~v  362 (397)
T 2ord_A          304 LEEVEEKGNYLMKKLQEMKEEYDVVAD-----------------VRGMGLMIGIQFREEVSNREVATKCFEN---K-LLV  362 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTEEE-----------------EEEETTEEEEEECTTSCHHHHHHHHHHT---T-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCceEE-----------------EEEEeEEEEEEECChHHHHHHHHHHHHC---C-CEE
Confidence            5667778888888887642  211000                 0034679999997432355677776542   3 333


Q ss_pred             ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ..|                           .++.||||++ ...+++.++.+.++|.++
T Consensus       363 ~~~---------------------------~~~~iRis~~-~~~~~e~i~~~~~~l~~~  393 (397)
T 2ord_A          363 VPA---------------------------GNNTIRFLPP-LTVEYGEIDLAVETLKKV  393 (397)
T ss_dssp             EEE---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred             ccC---------------------------CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence            322                           1468999987 656666666666666554

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.93  E-value=6.3e-24  Score=213.51  Aligned_cols=224  Identities=13%  Similarity=0.091  Sum_probs=158.9

Q ss_pred             CCccccCCCChhHHHHHHHHHHHh-CC-------CeE--EEecChHHHHHHHHHHH---HHhccCCCEEEEeCCCchhHH
Q 013079           89 DFFIYSRHFNPTVLNLSRQMAALE-GT-------EAA--YCTASDKAGMSAISSVL---MQLCSSGGHVVAARTLYGGTH  155 (450)
Q Consensus        89 ~~~~y~r~~~~~~~~l~~~iA~l~-g~-------~~~--~~tsg~~~gt~ai~~al---~~l~~~gd~Vi~~~~~y~~~~  155 (450)
                      ..+.|+.  .+...++++.+|+++ |.       +.+  ..|++   |++|+.++.   ..++++||+|+++.|.|.++.
T Consensus        71 ~~~~y~~--~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~---g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~  145 (409)
T 4eu1_A           71 TNMDYAP--VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLG---GTGALRIGGDLLNRFVANCNRIYGPDVGYPNHE  145 (409)
T ss_dssp             SCCCCCC--TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESH---HHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHH
T ss_pred             ccccCCC--CCCcHHHHHHHHHHHcCCCchhhccCceeeeeccc---chHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHH
Confidence            3344543  344568899999875 53       345  45899   999988754   345688999999999999998


Q ss_pred             HHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhc--CCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEE
Q 013079          156 ALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVV  223 (450)
Q Consensus       156 ~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~li  223 (450)
                      ..+.     ..|.++..++..       |+++|++++.+  ++++++++++||||||.+.+   +++|+++|+++|+++|
T Consensus       146 ~~~~-----~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li  220 (409)
T 4eu1_A          146 SIFA-----KAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPF  220 (409)
T ss_dssp             HHHH-----HTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHH-----HcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE
Confidence            8775     368888888751       89999999842  35677778999999999987   5569999999999999


Q ss_pred             EeCCCCCCCCCc------------cCCCCeEEEeCCCCccccCccceEEEE---EcCHH----HHHHHHHHhhhhhhccC
Q 013079          224 VDNTFSPLVLSP------------ARLGADVVVHSISKFISGGADIIAGAV---CGPAN----LVNSMMDLHQGALMLLG  284 (450)
Q Consensus       224 vD~~~~~~~~~~------------~~~g~di~~~S~sK~~g~~g~~igG~l---~~~~~----~~~~l~~~~~~~~~~~g  284 (450)
                      +|++|..+.+..            ...+..+++.|+||.+|++|+|+ ||+   +.+++    +++.+....... ....
T Consensus       221 ~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ri-G~~~~v~~~~~~~~~l~~~~~~~~~~~-~~~~  298 (409)
T 4eu1_A          221 VDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRC-GALHISTASAEEAKRLVSQLALLIRPM-YNNP  298 (409)
T ss_dssp             EEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHHH-HSSC
T ss_pred             EeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCc-eEEEEEeCCHHHHHHHHHHHHHHHhhh-cCCC
Confidence            999996665432            11245688999999999999999 885   56677    555554433211 1223


Q ss_pred             CCchHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          285 PTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       285 ~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      +.+.+.++..++..       .+.+....+++.++++++.+.|++++
T Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  345 (409)
T 4eu1_A          299 PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG  345 (409)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33444444433332       22344556678889999999999875

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.92  E-value=6.8e-25  Score=219.39  Aligned_cols=284  Identities=13%  Similarity=0.157  Sum_probs=190.9

Q ss_pred             CChhHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHH-HHHHhCCC-------
Q 013079           97 FNPTVLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHA-LLTHFFPR-------  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~-~~~~~~~~-------  164 (450)
                      ..+..+++++.+++++  +.+.+++|+|   |++|++++++++.  .+||+|++.++.|++... .+. ....       
T Consensus        85 ~~~~~~~l~~~la~~~~~~~~~v~~~~g---g~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~-~~g~~~~~~~~  160 (395)
T 1vef_A           85 PTPMRGEFYRTLTAILPPELNRVFPVNS---GTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLS-VTWEPKYREPF  160 (395)
T ss_dssp             CCHHHHHHHHHHHHTSCTTEEEEEEESS---HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHH-TCCCHHHHGGG
T ss_pred             CCHHHHHHHHHHHHhcCCCcCEEEEcCc---HHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhh-hcCCccccccc
Confidence            5678999999999999  4567899999   9999999998764  578999999999976433 332 1110       


Q ss_pred             -ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-----
Q 013079          165 -ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-----  234 (450)
Q Consensus       165 -~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-----  234 (450)
                       .....+..++..|+++|++++ ++++++|++++++||||.+.|    +++|.++|+++|+++|+|++|+++...     
T Consensus       161 ~p~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~  239 (395)
T 1vef_A          161 LPLVEPVEFIPYNDVEALKRAV-DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA  239 (395)
T ss_dssp             CSCSSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred             CCCCCCeeEeCCCcHHHHHHHh-ccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhH
Confidence             011125566667999999999 778999999988999999887    999999999999999999999655321     


Q ss_pred             --ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079          235 --PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHR  312 (450)
Q Consensus       235 --~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~  312 (450)
                        ......|++  |+||++++ |.++ |+++.++++++.+..... .....++.+.+.++..++..+.. ....++..++
T Consensus       240 ~~~~~~~~d~~--s~sK~~~~-g~~~-G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~  313 (395)
T 1vef_A          240 FEHFGIVPDIL--TLAKALGG-GVPL-GVAVMREEVARSMPKGGH-GTTFGGNPLAMAAGVAAIRYLER-TRLWERAAEL  313 (395)
T ss_dssp             HHHHTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHHTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred             hhhcCCCCCEE--EEcccccC-CCce-EEEEehHHHHhhhccCCc-CCCcCCCHHHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence              122346766  68999997 8888 888888777665543111 11111222222222222222111 2244566788


Q ss_pred             HHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhh-cccccccccccccccccc
Q 013079          313 ALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQ-NYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       313 ~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~-~~~~~g~i~vs~G~~~s~  391 (450)
                      ++++.+.|++++..+...                 ..+.|.+++|.++..  ...+.+.|. ..   | +.+..+     
T Consensus       314 ~~~l~~~l~~~~~~~~~~-----------------~~~~g~~~~~~~~~~--~~~l~~~l~~~~---g-i~v~~~-----  365 (395)
T 1vef_A          314 GPWFMEKLRAIPSPKIRE-----------------VRGMGLMVGLELKEK--AAPYIARLEKEH---R-VLALQA-----  365 (395)
T ss_dssp             HHHHHHHHHTSCCTTEEE-----------------EEEETTEEEEEESSC--SHHHHHHHHHHH---C-EECEES-----
T ss_pred             HHHHHHHHHHhhcCceEE-----------------EEEEEEEEEEEEcCh--HHHHHHHHHHHC---C-eEEecC-----
Confidence            888999998765311000                 002467999999742  345666655 32   2 333321     


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                            .++.||||++ ...+++.++.+.++|.++
T Consensus       366 ----------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~  393 (395)
T 1vef_A          366 ----------------------GPTVIRFLPP-LVIEKEDLERVVEAVRAV  393 (395)
T ss_dssp             ----------------------STTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence                                  1478999998 777777777777777654

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.92  E-value=5.7e-24  Score=220.44  Aligned_cols=284  Identities=13%  Similarity=0.101  Sum_probs=197.3

Q ss_pred             HHHHHHHHHHHhCCC----eE--EEecChHHHHHHHHHHHHHhccCC--------CEEEEeCCCchhHHHHHHHhCCCcc
Q 013079          101 VLNLSRQMAALEGTE----AA--YCTASDKAGMSAISSVLMQLCSSG--------GHVVAARTLYGGTHALLTHFFPRAC  166 (450)
Q Consensus       101 ~~~l~~~iA~l~g~~----~~--~~tsg~~~gt~ai~~al~~l~~~g--------d~Vi~~~~~y~~~~~~~~~~~~~~~  166 (450)
                      .+++++.+++++|.+    .+  ++|+|   |++|+.++++++..+|        |+|+++.+.|.++...+.     ..
T Consensus       141 e~~l~~~la~~~g~~~~~~~v~~~~t~g---gt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~-----~~  212 (514)
T 3mad_A          141 EAEVVAMTAHMLGGDAAGGTVCGTVTSG---GTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQ-----YF  212 (514)
T ss_dssp             HHHHHHHHHHHTTGGGGTSCCEEEEESS---HHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHH-----HH
T ss_pred             HHHHHHHHHHHcCCCCccCCcceEEcCc---HHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHH-----Hc
Confidence            345667779999876    56  99999   9999999999987766        899999999999888775     35


Q ss_pred             CeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC---------
Q 013079          167 NITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV---------  232 (450)
Q Consensus       167 g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~---------  232 (450)
                      |.+++.++.+     |+++|++++ ++++++|++++++||||.+.|+++|.++|+++|+++|+|++|+.+.         
T Consensus       213 G~~v~~v~~~~~~~~d~~~Le~~i-~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~  291 (514)
T 3mad_A          213 GIKLVRTPLDADYRADVAAMREAI-TPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGY  291 (514)
T ss_dssp             TCEEEEECBCTTSCBCHHHHHHHC-CTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTC
T ss_pred             CCeeEEeeeCCCCCCCHHHHHHHh-ccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCC
Confidence            8888888866     999999999 7899999999999999999999999999999999999999986442         


Q ss_pred             ----CCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh-hh-------hhccCCCch--HHHHHHHHc-
Q 013079          233 ----LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-GA-------LMLLGPTMN--PKVAFELSE-  297 (450)
Q Consensus       233 ----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-~~-------~~~~g~~~~--~~~a~~~~~-  297 (450)
                          ++....++|+++.|+||+++++ .++ |+++.+++.......... .+       ....|....  ...++.++. 
T Consensus       292 ~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~  369 (514)
T 3mad_A          292 PVPPFDFRLEGVTSVSADTHKYGYGA-KGT-SVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLS  369 (514)
T ss_dssp             CCCCCSTTSTTCCEEEECTTTTTCCC-SSC-EEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCcEEEECchhccCCC-CCe-EEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHH
Confidence                2223448999999999995533 345 777655444332110000 00       001222222  122233222 


Q ss_pred             -cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcc
Q 013079          298 -RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNY  375 (450)
Q Consensus       298 -~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~  375 (450)
                       ....+.+..++..++++++.+.|++++ ..+..+.                    .++++|...+.+ ...+.+.|...
T Consensus       370 l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--------------------~~~~~~~~~~~~-~~~l~~~L~~~  428 (514)
T 3mad_A          370 LGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--------------------LWVIAVASDELN-IYQVMEEMAGR  428 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--------------------SSEEEEECSSSC-HHHHHHHHHTT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--------------------eEEEEEeCCCCC-HHHHHHHHHhc
Confidence             223456677778889999999999874 4544322                    237888776432 45677777642


Q ss_pred             ccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC----CCCHHHHHHHHHHHHHHhhhcC
Q 013079          376 AQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY----LGTLDQRWSQFEKALSRMQDSG  446 (450)
Q Consensus       376 ~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~----~~~~~~~i~~l~~al~~~~~~~  446 (450)
                         | +.+ .|.                        + .++.+|++++.    .+++++.++.|.++++++.+.+
T Consensus       429 ---G-i~v-~g~------------------------~-~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~  473 (514)
T 3mad_A          429 ---G-WRL-NGL------------------------H-RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHP  473 (514)
T ss_dssp             ---T-CBC-EEE------------------------T-TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCT
T ss_pred             ---C-CEe-ccC------------------------C-CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence               3 332 110                        0 03579999872    2567788888888888776544

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.92  E-value=3.8e-24  Score=219.50  Aligned_cols=290  Identities=17%  Similarity=0.131  Sum_probs=196.8

Q ss_pred             ChhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHh----ccCCC-----EEEEeCCCchhHHHHHHHhCCCccC
Q 013079           98 NPTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQL----CSSGG-----HVVAARTLYGGTHALLTHFFPRACN  167 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l----~~~gd-----~Vi~~~~~y~~~~~~~~~~~~~~~g  167 (450)
                      ....+++++.+++++|.+.. ++|+|   |++|+.+++..+    .++||     +|+++.+.|+++...+.     ..|
T Consensus       106 ~~l~~~l~~~la~~~g~~~~~~~~~g---gt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~-----~~G  177 (474)
T 1wyu_B          106 LRLMWELGEYLKALTGMDAITLEPAA---GAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS-----MAG  177 (474)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH-----HTT
T ss_pred             HHHHHHHHHHHHHHHCCCceeecChH---HHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH-----HCC
Confidence            35678899999999998765 57799   999999877654    35787     99999999999887764     368


Q ss_pred             eeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccc-cCHHHHHHHHHhcCCEEEEeCCCCCC---CCCccCC
Q 013079          168 ITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAV-ANIPELSRLAHDKGVTVVVDNTFSPL---VLSPARL  238 (450)
Q Consensus       168 ~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v-~~l~~I~~la~~~gi~livD~~~~~~---~~~~~~~  238 (450)
                      .++++++.+     |+++|++++ +++|++|++++| ||+|.+ .++++|+++|+++|+++|+|++|...   ..++..+
T Consensus       178 ~~vv~v~~~~~~~~d~~~L~~~i-~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~  255 (474)
T 1wyu_B          178 YQVREIPSGPEGEVDLEALKREL-GPHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDM  255 (474)
T ss_dssp             CEEEEECBCTTSSBCHHHHHHHC-STTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHH
T ss_pred             CEEEEecCCCCCCcCHHHHHHhh-CCCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccC
Confidence            899988875     899999999 788999999998 689999 79999999999999999999998322   2234445


Q ss_pred             CCeEEEeCCCCccccC-c---cceEEEEEcCHHHHHHHHH-Hh--hh---------------hhhccCCCchHHHHHHHH
Q 013079          239 GADVVVHSISKFISGG-A---DIIAGAVCGPANLVNSMMD-LH--QG---------------ALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       239 g~di~~~S~sK~~g~~-g---~~igG~l~~~~~~~~~l~~-~~--~~---------------~~~~~g~~~~~~~a~~~~  296 (450)
                      ++|+++.|+||+++++ |   .++ |+++.++++++.+.. ..  .+               .....++...+.+++..+
T Consensus       256 g~di~~~s~~K~~~~p~g~gG~~~-G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l  334 (474)
T 1wyu_B          256 GFDVVHLNLHKTFTVPHGGGGPGS-GPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYI  334 (474)
T ss_dssp             TCSEEECCTTTTTCCCCTTSCCCC-CCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEeCccccccCCCCCCCCe-EEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHH
Confidence            8999999999999866 3   366 999888877665531 00  00               000112222233333332


Q ss_pred             c--cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          297 E--RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       297 ~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                      .  +.+.+.+..++..++++++.+.|++.+.++..+.                  .....+++.++.......+.+.|..
T Consensus       335 ~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~L~~  396 (474)
T 1wyu_B          335 RTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDG------------------PSMHEFVAQPPEGFRALDLAKGLLE  396 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCS------------------SCCSCEEEBCSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCC------------------CcceEEEEEcCCCCCHHHHHHHHHH
Confidence            2  1234555667778899999999988755542221                  0111134444321224566666654


Q ss_pred             cccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .   | +.+. +          ...    +       ...++.||||++ ..++++.++.+.++|.++.
T Consensus       397 ~---G-i~~~-~----------~~~----~-------~~~~~~lRis~~-~~~t~e~id~~~~~L~~~~  438 (474)
T 1wyu_B          397 L---G-FHPP-T----------VYF----P-------LIVKEALMVEPT-ETEAKETLEAFAEAMGALL  438 (474)
T ss_dssp             T---T-CCCC-E----------ESC----S-------TTSTTCEEECCC-TTSCHHHHHHHHHHHHHHH
T ss_pred             C---C-cccc-c----------ccc----c-------cccCCEEEEEee-cCCCHHHHHHHHHHHHHHH
Confidence            2   3 2221 1          000    0       011478999999 7667777777777777654

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.92  E-value=5.6e-24  Score=215.75  Aligned_cols=288  Identities=13%  Similarity=0.128  Sum_probs=184.8

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc---------cCC-CEEEEeCCCchhHHHHHHHhCCC--
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR--  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~---------~~g-d~Vi~~~~~y~~~~~~~~~~~~~--  164 (450)
                      ..+...+++++|++++|.+.++||+|   |++|+.++++.+.         .+| ++||+.++.|++...........  
T Consensus       105 ~~~~~~~l~~~la~~~g~~~v~~~~s---GseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~  181 (433)
T 1z7d_A          105 FSVPLGICERYLTNLLGYDKVLMMNT---GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKK  181 (433)
T ss_dssp             EEHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------
T ss_pred             CCHHHHHHHHHHHhhcCCCeEEEeCC---HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcc
Confidence            56778999999999999999999999   9999999998753         367 89999999998864422111000  


Q ss_pred             ------ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          165 ------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       165 ------~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                            .....+..++..|+++|++++.++++++|++++++|++|.+.    ++++|.++|+++|+++|+||+|+++...
T Consensus       182 ~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~  261 (433)
T 1z7d_A          182 CTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT  261 (433)
T ss_dssp             ----------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred             ccccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcC
Confidence                  001356667778999999998446789999998888999875    7999999999999999999999655321


Q ss_pred             -------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH
Q 013079          235 -------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM  306 (450)
Q Consensus       235 -------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~  306 (450)
                             ......|++  |++|.++ +| +++ |++++++++++.+..... ..+..++.+.+.++..++..++. ....
T Consensus       262 g~~~~~~~~~~~~di~--t~sK~l~-~G~~~~-G~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~  335 (433)
T 1z7d_A          262 GKLLCVHHYNVKPDVI--LLGKALS-GGHYPI-SAVLANDDIMLVIKPGEH-GSTYGGNPLAASICVEALNVLIN-EKLC  335 (433)
T ss_dssp             SSSSGGGGGTCCCSEE--EECGGGG-TTSSCC-EEEEECHHHHTTCCTTCC-CCTTTTCHHHHHHHHHHHHHHHH-TTHH
T ss_pred             CcchhhHhcCCCCCEE--EECcccc-CCCCCe-EEEEECHHHHhhhccccc-cccCCCCHHHHHHHHHHHHHHHh-ccHH
Confidence                   112346776  6889999 57 787 999999888766543211 11222333333333333222111 1234


Q ss_pred             HHHHHHHHHHHHHHHhC--CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhcccccccccc
Q 013079          307 KEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAV  383 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~--~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~v  383 (450)
                      ++..++++++.+.|+++  +.....                 ...+.|.+++|.++.. .....+.+.|...   | +.+
T Consensus       336 ~~~~~~~~~l~~~L~~l~~~~~~~~-----------------~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~---G-v~v  394 (433)
T 1z7d_A          336 ENAEKLGGPFLENLKRELKDSKIVR-----------------DVRGKGLLCAIEFKNELVNVLDICLKLKEN---G-LIT  394 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTTEE-----------------EEEEETTEEEEEECTTTCCHHHHHHHHHHT---T-EEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeE-----------------EEEeeeeEEEEEEccChhHHHHHHHHHHHC---C-eEE
Confidence            55677778888888764  221100                 0114677999999743 1245677766542   3 332


Q ss_pred             ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          384 SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       384 s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ..+                           ..+.|||+++ ...+++.++.+.++|.++
T Consensus       395 ~~~---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~  425 (433)
T 1z7d_A          395 RDV---------------------------HDKTIRLTPP-LCITKEQLDECTEIIVKT  425 (433)
T ss_dssp             CEE---------------------------TTTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred             ecC---------------------------CCCEEEEECC-cCCCHHHHHHHHHHHHHH
Confidence            211                           1478999998 655555566655555543

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.92  E-value=4.6e-25  Score=217.51  Aligned_cols=303  Identities=11%  Similarity=0.029  Sum_probs=196.4

Q ss_pred             HHHHHhhcCCCCCCCC-CccccCC---CChhHHHHHHHHHHHhCCC---eEEEecChHHH-HHHHHHHHHHhccC---CC
Q 013079           74 ETMRRMFAGELGPDRD-FFIYSRH---FNPTVLNLSRQMAALEGTE---AAYCTASDKAG-MSAISSVLMQLCSS---GG  142 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~-~~~y~r~---~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~g-t~ai~~al~~l~~~---gd  142 (450)
                      +++.+.+... .|+.. .|.++..   ..+..+++++.+|+++|.+   .+++|+|   + ++|+.+++..++.+   ||
T Consensus        20 ~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g---~gt~al~~~~~~l~~~~~~g~   95 (360)
T 1w23_A           20 ERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQG---GASLQFTMLPMNLLTKGTIGN   95 (360)
T ss_dssp             HHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESS---HHHHHHHHHHHHHCCTTCEEE
T ss_pred             HHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECC---cchHHHHHHHHHhcCCCCccc
Confidence            6666655443 45432 2333221   2235789999999999975   6899999   8 99999999988765   55


Q ss_pred             EEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHH-hhhcCCceEEEEecCCCCcccccCHHHHHHHH
Q 013079          143 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNS-AIVQGRTKVLYFESISNPTLAVANIPELSRLA  215 (450)
Q Consensus       143 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~-ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la  215 (450)
                      .|+++.++|..... +.     ..| ++++++.+      |++++++ ++ +++|++|++++|+||||.+.+  +   ++
T Consensus        96 ~vi~~~~~~~~~~~-~~-----~~g-~~~~v~~~~~~~~~d~~~l~~~~i-~~~~k~v~~~~~~nptG~~~~--~---i~  162 (360)
T 1w23_A           96 YVLTGSWSEKALKE-AK-----LLG-ETHIAASTKANSYQSIPDFSEFQL-NENDAYLHITSNNTIYGTQYQ--N---FP  162 (360)
T ss_dssp             EEECSHHHHHHHHH-HH-----TTS-EEEEEEECGGGTSCSCCCGGGCCC-CTTEEEEEEESEETTTTEECS--S---CC
T ss_pred             EEEecchhHHHHHH-HH-----HhC-CeEEeecccccCcCCccchHhhcc-CCCCCEEEEeCCCCCcceecc--c---cc
Confidence            67766666654322 22     268 88877642      6678888 78 788999999999999999977  3   33


Q ss_pred             HhcCCEEEEeCCCCCCCCCccCC-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh--------hccCCC
Q 013079          216 HDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL--------MLLGPT  286 (450)
Q Consensus       216 ~~~gi~livD~~~~~~~~~~~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~--------~~~g~~  286 (450)
                      +++|+++|+|++|+..... ..+ ..|++++|+||.+|++|  + |+++.++++++.+........        .....+
T Consensus       163 ~~~~~~li~D~a~~~~~~~-~~~~~~di~~~s~sK~~~~~G--~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (360)
T 1w23_A          163 EINHAPLIADMSSDILSRP-LKVNQFGMIYAGAQKNLGPSG--V-TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNT  238 (360)
T ss_dssp             CCCSSCEEEECTTTTTSSC-CCGGGCSEEEEETTTTTSCTT--C-EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSC
T ss_pred             ccCCceEEEechhhcCCCC-cCcccCCEEEEEcccccCCCC--c-EEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCC
Confidence            4899999999998433221 122 23899999999999776  6 898888877655433211000        011112


Q ss_pred             chHH---HHHHHHccC--C-cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          287 MNPK---VAFELSERI--P-HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       287 ~~~~---~a~~~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      ++..   ++..++..+  . .+....+++.++++++.+.|++++ . ....+     |..           ..+.+++|.
T Consensus       239 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~~-----------~~~~~~~~~  302 (360)
T 1w23_A          239 PPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE-----KGS-----------RSLMNVTFN  302 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC-----GGG-----------BCSSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCC-----chh-----------ccCcEEEEE
Confidence            2222   121222211  1 355566778889999999998876 2 22100     110           124489999


Q ss_pred             eCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 013079          359 METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKA  438 (450)
Q Consensus       359 l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~a  438 (450)
                      +++......+++.|...   | +.+..|..                         .++.||||++ ..++++.++.+.++
T Consensus       303 ~~~~~~~~~~~~~l~~~---g-i~~~~~~~-------------------------~~~~iRis~~-~~~~~~~i~~~~~~  352 (360)
T 1w23_A          303 LRNEELNQQFLAKAKEQ---G-FVGLNGHR-------------------------SVGGCRASIY-NAVPIDACIALREL  352 (360)
T ss_dssp             CSSHHHHHHHHHHHHHT---T-EESCBCCT-------------------------TTCSEEEECC-TTSCHHHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHC---C-eeeecCCC-------------------------CCCeEEEEec-CCCCHHHHHHHHHH
Confidence            98654567788877642   3 34332210                         1478999999 88788888888888


Q ss_pred             HHHhh
Q 013079          439 LSRMQ  443 (450)
Q Consensus       439 l~~~~  443 (450)
                      |.++.
T Consensus       353 l~~~~  357 (360)
T 1w23_A          353 MIQFK  357 (360)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.92  E-value=1.5e-23  Score=218.21  Aligned_cols=150  Identities=11%  Similarity=0.240  Sum_probs=122.6

Q ss_pred             CeEEEecChHHHHHHHHHHHHH-----hccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-------CCHHHHH
Q 013079          115 EAAYCTASDKAGMSAISSVLMQ-----LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-------SDHEMVN  182 (450)
Q Consensus       115 ~~~~~tsg~~~gt~ai~~al~~-----l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-------~d~~~l~  182 (450)
                      +++++|+|   +++++.+++.+     ++++||+|++++|.|+++.....  +.. .|.++..++.       .|+++|+
T Consensus       166 ~~I~~t~G---~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~--~~~-~g~~~~~v~~~~~~~~~~d~~~l~  239 (546)
T 2zy4_A          166 VNLFAVEG---GTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE--LAQ-YALEEVAINADPSLNWQYPDSELD  239 (546)
T ss_dssp             EEEEEEEH---HHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH--STT-SCCEEEEEECBGGGTTBCCHHHHG
T ss_pred             ceEEEECC---HHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH--HcC-CCcEEEEEecCcccCCCCCHHHHH
Confidence            57899999   99999999987     47899999999999999987653  222 4677777764       3789998


Q ss_pred             HhhhcCCceEEEEecCCCCcccccC---HHHHHHHH--HhcCCEEEEeCCCCCCCCCcc---CC--CCeEEEeCCCCccc
Q 013079          183 SAIVQGRTKVLYFESISNPTLAVAN---IPELSRLA--HDKGVTVVVDNTFSPLVLSPA---RL--GADVVVHSISKFIS  252 (450)
Q Consensus       183 ~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la--~~~gi~livD~~~~~~~~~~~---~~--g~di~~~S~sK~~g  252 (450)
                      +++ ++++++|++++||||||.+.+   +++|+++|  +++|+++|+|++|..+...+.   ..  +.++++.|+||.+|
T Consensus       240 ~~~-~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g  318 (546)
T 2zy4_A          240 KLK-DPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFG  318 (546)
T ss_dssp             GGG-STTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTT
T ss_pred             Hhh-CCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccC
Confidence            887 788999999999999999986   66788888  778999999999965543221   11  57899999999999


Q ss_pred             cCccceEEEEEcCHH-HHHHH
Q 013079          253 GGADIIAGAVCGPAN-LVNSM  272 (450)
Q Consensus       253 ~~g~~igG~l~~~~~-~~~~l  272 (450)
                      ++|+|+ ||++++++ +++.+
T Consensus       319 ~~GlRi-G~~~~~~~~l~~~l  338 (546)
T 2zy4_A          319 ATGWRL-GVVAAHQQNVFDLA  338 (546)
T ss_dssp             CGGGCE-EEEEEESSCHHHHH
T ss_pred             CCCcce-EEEEECCHHHHHHH
Confidence            999998 99988764 76665

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.92  E-value=1.1e-23  Score=214.93  Aligned_cols=325  Identities=11%  Similarity=0.049  Sum_probs=204.9

Q ss_pred             ccccCccccCC-HHHHHHhhcCCCCCCCC--CccccCC--------CChhHHHHHHHHHHHhCCCe-EEEecChHHHHH-
Q 013079           62 IEASATFTVME-PETMRRMFAGELGPDRD--FFIYSRH--------FNPTVLNLSRQMAALEGTEA-AYCTASDKAGMS-  128 (450)
Q Consensus        62 i~~att~~~~~-~~~~~~~~~~~~~n~~~--~~~y~r~--------~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~-  128 (450)
                      -++++|+..+. .++|.......+.++.+  .+.+...        .....+++++.+|+++|++. ++||+|   ||+ 
T Consensus        85 d~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~t~g---~te~  161 (456)
T 2z67_A           85 KSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVHAIATPI---STGM  161 (456)
T ss_dssp             TCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEESS---CHHH
T ss_pred             cccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCCEEEeCc---HHHH
Confidence            35667766555 36665533223344332  2222211        12345779999999999865 899999   994 


Q ss_pred             HHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC---C-----CHHHHHHhh-hc---CCceEEE
Q 013079          129 AISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---S-----DHEMVNSAI-VQ---GRTKVLY  194 (450)
Q Consensus       129 ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---~-----d~~~l~~ai-~~---~~t~lv~  194 (450)
                      ++.+++.++..  +|++|++++++|+++...+.     ..|+++++++.   +     |+++|++++ ..   .++.+|+
T Consensus       162 a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~-----~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv  236 (456)
T 2z67_A          162 SISLCLSAARKKYGSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVL  236 (456)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHH-----HcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEE
Confidence            55556665433  67789999999999887764     26888877764   2     899999998 32   4788888


Q ss_pred             EecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--Ccc---CC--CCeEEEeCCCCccccCccceEEEEEc-CH
Q 013079          195 FESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--SPA---RL--GADVVVHSISKFISGGADIIAGAVCG-PA  266 (450)
Q Consensus       195 i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~~~---~~--g~di~~~S~sK~~g~~g~~igG~l~~-~~  266 (450)
                      ++++|||||.+.|+++|+++|+++|+++|+|++|+....  .+.   .+  ++|+++.|+||+++++ .++ |+++. ++
T Consensus       237 ~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p-~g~-G~l~~~~~  314 (456)
T 2z67_A          237 STLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-IGG-GLVYSTDA  314 (456)
T ss_dssp             EESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-SSC-EEEEESCH
T ss_pred             EeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCC-CCe-EEEEEcCH
Confidence            999999999999999999999999999999999854322  111   12  7899999999986543 335 88877 57


Q ss_pred             HHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHH
Q 013079          267 NLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHEL  340 (450)
Q Consensus       267 ~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l  340 (450)
                      ++++.+.....+    .........++.++.  ..+.+.+..++..++++++.+.|+++    +..+..|.         
T Consensus       315 ~~~~~l~~~~~g----~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~---------  381 (456)
T 2z67_A          315 EFIKEISLSYPG----RASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE---------  381 (456)
T ss_dssp             HHHHHHHTTSCS----CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC---------
T ss_pred             HHHhhcCcCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC---------
Confidence            777766322111    111111222222222  22345566677888999999999886    44333221         


Q ss_pred             HHHHhccCCCcCcEEEEEe--CCHHHHHHHHHHhhccccccccccc--cccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079          341 LKSMANKEYGFGGLLCLDM--ETEEKANRLMNYLQNYAQFGFMAVS--LGYYETLMSCSGSSTSSELNAEEKALAGISAG  416 (450)
Q Consensus       341 ~~~~~~~~~g~g~~~~~~l--~~~~~~~~~~~~l~~~~~~g~i~vs--~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~  416 (450)
                                  ++++|.+  ++.  ...+.+.|...+..+ +.+.  .| ... ..+..               -...+
T Consensus       382 ------------~~v~~~~~~~~~--~~~l~~~L~~~gi~~-~rv~~~~g-~f~-G~~~~---------------~~~~~  429 (456)
T 2z67_A          382 ------------SPIASCISVNSD--PVEIAAKLYNLRVTG-PRGIKKTD-HFG-NCYLG---------------TYTHD  429 (456)
T ss_dssp             ------------CSSEEEEECSSC--HHHHHHHHHHTTEES-CEEECTTC-HHH-HTCSS---------------CCSCC
T ss_pred             ------------CeEEEEEecccH--HHHHHHHHHHcCCCc-ceEEeecC-ccc-ccccc---------------ccCcc
Confidence                        2666777  542  234445444311000 1111  00 000 00000               01247


Q ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          417 LVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       417 ~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      +||+|++ ..++++.++.+.++|+++
T Consensus       430 ~vr~s~~-~~~t~eeid~~l~~L~~~  454 (456)
T 2z67_A          430 YIVMNAA-IGVRTEDIVNSVSKLEKI  454 (456)
T ss_dssp             EEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred             hhhhhhh-cCCCHHHHHHHHHHHHHH
Confidence            8999999 888899999998888764

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.86  E-value=7.3e-27  Score=233.63  Aligned_cols=213  Identities=14%  Similarity=0.051  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..++++.+|+++    |    .+.+++|+|   |++|+.+++++++++||+|++..|.|+++...+.     ..|.++..
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g---~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~-----~~g~~~~~  139 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEG---VVPAISIAIQAFTKEGEAVLINSPVYPPFARSVR-----LNNRKLVS  139 (392)
Confidence            455666666654    3    456899999   9999999999999999999999999999887664     25666666


Q ss_pred             eCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCC------c
Q 013079          173 VDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLS------P  235 (450)
Q Consensus       173 v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~------~  235 (450)
                      ++.        .|++++++++.++++++|++++|+||||.+.+   +++|+++|+++|+++|+|++|..+.+.      .
T Consensus       140 ~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~  219 (392)
T 3b1d_A          140 NSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSF  219 (392)
Confidence            554        26788888883268899999999999999975   889999999999999999999554321      1


Q ss_pred             c---C--CCCeEEEeCCCCccccCccceEEEEEcCH-HHHHHHHHHhhhhhhccCCCchHHHHHHHHcc-CCcHHHHHHH
Q 013079          236 A---R--LGADVVVHSISKFISGGADIIAGAVCGPA-NLVNSMMDLHQGALMLLGPTMNPKVAFELSER-IPHLGLRMKE  308 (450)
Q Consensus       236 ~---~--~g~di~~~S~sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~-~~~l~~~~~~  308 (450)
                      .   .  .+.++++.|+||.+|++|.|+ ||+++++ ++++.+............+.+.+.++..++.. .+++.+..++
T Consensus       220 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~  298 (392)
T 3b1d_A          220 NTVSPDFKDFALVLSSATKTFNIAGTKN-SYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAV  298 (392)
Confidence            1   1  346789999999999899998 9988764 58887766544221112233444434333332 2334455556


Q ss_pred             HHHHHHHHHHHHHh
Q 013079          309 HCHRALIFARRMKK  322 (450)
Q Consensus       309 ~~~~~~~l~~~L~~  322 (450)
                      +.++++.+.+.|++
T Consensus       299 ~~~~~~~l~~~l~~  312 (392)
T 3b1d_A          299 LEENIQFAVEYFAQ  312 (392)
Confidence            67788888888876

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.92  E-value=7.6e-24  Score=215.16  Aligned_cols=288  Identities=14%  Similarity=0.112  Sum_probs=193.6

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc---------cCC-CEEEEeCCCchhHHHHHHHhCCC--
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC---------SSG-GHVVAARTLYGGTHALLTHFFPR--  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~---------~~g-d~Vi~~~~~y~~~~~~~~~~~~~--  164 (450)
                      ..+...++++.|++++|.+.++||+|   |++|+.++++.+.         .+| |+||+.++.|++...........  
T Consensus       116 ~~~~~~~l~~~la~~~g~~~v~~~~s---GseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~  192 (439)
T 2oat_A          116 YNNVLGEYEEYITKLFNYHKVLPMNT---GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPT  192 (439)
T ss_dssp             EESSHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCC---HHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChh
Confidence            45778999999999999999999999   9999999998764         356 89999999998754322111100  


Q ss_pred             ------ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCccccc----CHHHHHHHHHhcCCEEEEeCCCCCCCCC
Q 013079          165 ------ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVA----NIPELSRLAHDKGVTVVVDNTFSPLVLS  234 (450)
Q Consensus       165 ------~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~----~l~~I~~la~~~gi~livD~~~~~~~~~  234 (450)
                            .....+..++.+|+++|++++.++++++|++++++|++|.+.    ++++|.++|++||+++|+||+|.++...
T Consensus       193 ~~~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~  272 (439)
T 2oat_A          193 SYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART  272 (439)
T ss_dssp             HHTTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred             cccCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccC
Confidence                  011356677778999999999436789999998888999876    7999999999999999999999655321


Q ss_pred             -------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH
Q 013079          235 -------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM  306 (450)
Q Consensus       235 -------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~  306 (450)
                             ......|++  |++|.+++ | +++ |++++++++++.+..... ..+..++.+.+.++..++..++. ....
T Consensus       273 g~~~~~~~~~~~~Di~--t~sK~l~~-G~~~~-G~v~~~~~~~~~l~~~~~-~~t~~~~~~~~aaa~aal~~~~~-~~~~  346 (439)
T 2oat_A          273 GRWLAVDYENVRPDIV--LLGKALSG-GLYPV-SAVLCDDDIMLTIKPGEH-GSTYGGNPLGCRVAIAALEVLEE-ENLA  346 (439)
T ss_dssp             SSSSGGGGGTCCCSEE--EECGGGGT-TSSCC-EEEEECHHHHTTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-TTHH
T ss_pred             CcchhHHHhCCCCcEE--EecccccC-CCCCe-EEEEECHHHHhccCCCCc-ccCCCcCHHHHHHHHHHHHHHhh-hhHH
Confidence                   112246876  68899995 7 787 999999888766643211 11223333333333223222211 1244


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--HHHHHHHHHhhccccccccccc
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--EKANRLMNYLQNYAQFGFMAVS  384 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~~~~~~~~~l~~~~~~g~i~vs  384 (450)
                      ++..++++++.+.|++++..+..                 ...+.|.++++.++..  .....+.+.|...   | +.+.
T Consensus       347 ~~~~~~~~~l~~~L~~l~~~~~~-----------------~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~---G-v~v~  405 (439)
T 2oat_A          347 ENADKLGIILRNELMKLPSDVVT-----------------AVRGKGLLNAIVIKETKDWDAWKVCLRLRDN---G-LLAK  405 (439)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTTEE-----------------EEEEETTEEEEEECCCSSCCHHHHHHHHHHT---T-EECC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcE-----------------EEEeeeeEEEEEEecCccHHHHHHHHHHHHC---C-eEEe
Confidence            56677888888888775321100                 0114678999999742  1245677766542   3 3322


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .+                           .++.|||+++ ...+++.++.+.++|.++
T Consensus       406 ~~---------------------------~~~~iRi~~~-~~~t~e~i~~~l~~l~~~  435 (439)
T 2oat_A          406 PT---------------------------HGDIIRFAPP-LVIKEDELRESIEIINKT  435 (439)
T ss_dssp             BS---------------------------SSSEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred             cC---------------------------CCCEEEEECc-cCCCHHHHHHHHHHHHHH
Confidence            11                           1478999998 766677777776666654

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.1e-23  Score=217.31  Aligned_cols=285  Identities=12%  Similarity=0.068  Sum_probs=198.0

Q ss_pred             HHHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhcc-----CC---CEEEEeCCCchhHHHHHHHhCCCccCe
Q 013079          101 VLNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCS-----SG---GHVVAARTLYGGTHALLTHFFPRACNI  168 (450)
Q Consensus       101 ~~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~-----~g---d~Vi~~~~~y~~~~~~~~~~~~~~~g~  168 (450)
                      .+++++.+++++|.+    .+++|+|   |++|+.++++++++     +|   |+|+++.+.|.++...+.     ..|.
T Consensus       109 ~~~~~~~la~~~g~~~~~~~~~~~~g---gt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~-----~~G~  180 (497)
T 3mc6_A          109 ESEVVSMVLRMFNAPSDTGCGTTTSG---GTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY-----YFGM  180 (497)
T ss_dssp             HHHHHHHHHHHTTCCTTTCCEEEESS---HHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH-----HSCC
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEcCc---HHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH-----HcCC
Confidence            456777788888876    5899999   99999999998764     46   899999999999988875     3688


Q ss_pred             eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-----------
Q 013079          169 TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-----------  231 (450)
Q Consensus       169 ~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-----------  231 (450)
                      ++++++.+      |+++|++++ ++++++|++++|+||+|.+.|+++|+++|+++|+++|+|++|+.+           
T Consensus       181 ~~~~v~~~~~~~~~d~~~l~~~i-~~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~  259 (497)
T 3mc6_A          181 KLRHVELDPTTYQVDLGKVKKFI-NKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYK  259 (497)
T ss_dssp             EEEEECBCTTTCSBCTTTTGGGC-CSSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCC
T ss_pred             eEEEEecCcccCcCCHHHHHHHH-hhCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhccc
Confidence            88888754      588999999 788999999999999999999999999999999999999998522           


Q ss_pred             ---CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-hhhh-------hccCCCch--HHHHHHHHc-
Q 013079          232 ---VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGAL-------MLLGPTMN--PKVAFELSE-  297 (450)
Q Consensus       232 ---~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~-------~~~g~~~~--~~~a~~~~~-  297 (450)
                         .++....|+|+++.|+||+++++ .++ |+++.+++.+....... ..+.       ...+....  ..+++.++. 
T Consensus       260 ~~~~~~~~~~g~d~~~~s~~K~l~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~  337 (497)
T 3mc6_A          260 NLPLLDFRVPGVTSISCDTHKYGFAP-KGS-SVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVN  337 (497)
T ss_dssp             SCCCCSTTSTTCCEEEEETTTTTCCC-SSC-EEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHH
T ss_pred             CCccccccCCCCcEEEECchhhcCCC-CCc-eeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHH
Confidence               13333458999999999997432 335 88777655443321110 1000       00011111  222222222 


Q ss_pred             -cCCcHHHHHHHHHHHHHHHHHHHHhC--CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          298 -RIPHLGLRMKEHCHRALIFARRMKKL--GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       298 -~~~~l~~~~~~~~~~~~~l~~~L~~~--~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                       ....+.+..++..++++++.+.|++.  ++.+..+.                   .+++++|..++.+ ...+.+.|..
T Consensus       338 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-------------------~~~~v~~~~~~~~-~~~l~~~L~~  397 (497)
T 3mc6_A          338 MGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-------------------RYSVISFSSKTLN-IHELSDRLSK  397 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-------------------CSSEEEEECTTTT-HHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-------------------CeeEEEEeCCCCC-HHHHHHHHHh
Confidence             22335566777888999999999994  45554332                   3558888876432 5667777765


Q ss_pred             cccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC--CCCCHHHHHHHHHHHHHHhhhcC
Q 013079          375 YAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG--YLGTLDQRWSQFEKALSRMQDSG  446 (450)
Q Consensus       375 ~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g--~~~~~~~~i~~l~~al~~~~~~~  446 (450)
                      .   | +.++.+..                          +..+|+++.  ..++.+++++.|.+++.++.+.+
T Consensus       398 ~---G-i~v~~~~~--------------------------~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~~~  441 (497)
T 3mc6_A          398 K---G-WHFNALQK--------------------------PVALHMAFTRLSAHVVDEICDILRTTVQELKSES  441 (497)
T ss_dssp             T---T-CBCEECCS--------------------------SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC-
T ss_pred             C---C-EEEecCCC--------------------------CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            2   3 33332211                          235788876  14888999999999988876543

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.92  E-value=1.2e-22  Score=205.24  Aligned_cols=210  Identities=19%  Similarity=0.216  Sum_probs=159.5

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-  176 (450)
                      .+...++++.||++++.+.+++|+|   |++|+++++.++. +||+|+++.++|+++...+.     ..|.++.+++.+ 
T Consensus        51 ~~~~~~l~~~la~~~~~~~v~~~~g---gt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~-----~~G~~~~~v~~~~  121 (424)
T 2po3_A           51 GPLVREFEERVAGLAGVRHAVATCN---ATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALR-----WIGLTPVFADIDP  121 (424)
T ss_dssp             CHHHHHHHHHHHHHHTSSEEEEESC---HHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHH-----HTTCEEEEECBCT
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCC---HHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHH-----HcCCEEEEEecCC
Confidence            4778999999999999999999999   9999999999875 78999999999999988765     368888888754 


Q ss_pred             -----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCC--CeEEEeCCC
Q 013079          177 -----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLG--ADVVVHSIS  248 (450)
Q Consensus       177 -----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g--~di~~~S~s  248 (450)
                           |+++|++++ ++++++|+++   ||+|.+.++++|.++|+++|+++|+|++|+ ++.++...++  .|+++.|+|
T Consensus       122 ~~~~~d~~~l~~~i-~~~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~s  197 (424)
T 2po3_A          122 DTGNLDPDQVAAAV-TPRTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFH  197 (424)
T ss_dssp             TTSSBCHHHHGGGC-CTTEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred             CcCCcCHHHHHHhh-CcCCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCC
Confidence                 899999999 7789999974   489999999999999999999999999995 4543322222  589999998


Q ss_pred             --CccccCccceEEEEEcC-HHHHHHHHHHhhhhhh------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 013079          249 --KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALM------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHRALIFA  317 (450)
Q Consensus       249 --K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~  317 (450)
                        |.+++  .++ |+++.+ +++++.+.........      ..|  ..+.+..+..++...+.+....++..++++++.
T Consensus       198 k~K~l~~--~~~-G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~  274 (424)
T 2po3_A          198 ATKAVNA--FEG-GAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYR  274 (424)
T ss_dssp             TTSSSCC--SSC-EEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccC--CCC-eEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              66654  565 999888 7888888765442110      011  123444444444334445555556667777777


Q ss_pred             HHHHhC
Q 013079          318 RRMKKL  323 (450)
Q Consensus       318 ~~L~~~  323 (450)
                      +.|+++
T Consensus       275 ~~L~~~  280 (424)
T 2po3_A          275 EHLADL  280 (424)
T ss_dssp             HHTCSC
T ss_pred             HHhccC
Confidence            888765

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.92  E-value=1.6e-23  Score=216.24  Aligned_cols=293  Identities=12%  Similarity=0.042  Sum_probs=194.6

Q ss_pred             hHHHHHHHHHHHhCCC-------eEEEecChHHHHHHHHHHHHHhccC--------CC-----EEEEeCCCchhHHHHHH
Q 013079          100 TVLNLSRQMAALEGTE-------AAYCTASDKAGMSAISSVLMQLCSS--------GG-----HVVAARTLYGGTHALLT  159 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~~-------~~~~tsg~~~gt~ai~~al~~l~~~--------gd-----~Vi~~~~~y~~~~~~~~  159 (450)
                      ..+++++.+++++|.+       ..++|+|   |++|+.+++.++..+        |+     +|+++.+.|.++...+.
T Consensus        96 le~~~~~~la~l~g~~~~~~~~~~g~~t~g---gtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~  172 (502)
T 3hbx_A           96 LQNRCVNMIAHLFNAPLEEAETAVGVGTVG---SSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFAR  172 (502)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccccCCcceecCc---HHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHH
Confidence            3456777899999987       3467999   999999999877654        76     89999999999888775


Q ss_pred             HhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc------CCEEEEeCC
Q 013079          160 HFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNT  227 (450)
Q Consensus       160 ~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~------gi~livD~~  227 (450)
                           ..|+++++++.+      |+++|++++ +++|++|++++++||||.+.|+++|.++|+++      |+++|+|++
T Consensus       173 -----~~G~~~~~v~~~~~~~~~d~~~l~~~i-~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A  246 (502)
T 3hbx_A          173 -----YFEVELKEVKLSEGYYVMDPQQAVDMV-DENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAA  246 (502)
T ss_dssp             -----HTTCEEEEECCBTTBCSCCHHHHHHHC-CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECT
T ss_pred             -----HcCceeEEEecCCCcCcCCHHHHHHHH-hhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECC
Confidence                 368888888753      899999999 88999999999999999999999999999999      999999999


Q ss_pred             CCCCC----CCc-----cCCCCeEEEeCCCCccccCccceEEEE-EcCHHHHHHHHHHhhhhhh-------ccCCCc--h
Q 013079          228 FSPLV----LSP-----ARLGADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALM-------LLGPTM--N  288 (450)
Q Consensus       228 ~~~~~----~~~-----~~~g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~-------~~g~~~--~  288 (450)
                      |+.+.    ...     ...++|+++.|+||+++++.. + |++ +.+++.+.........+..       ..+...  .
T Consensus       247 ~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g-~-G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~  324 (502)
T 3hbx_A          247 SGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAG-I-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQ  324 (502)
T ss_dssp             TGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS-C-EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHH
T ss_pred             ccchhhhhhCcccccccCCCCceEEEECcccccCCCCC-e-EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHH
Confidence            95332    111     123789999999999964432 5 554 5555544222111111100       001111  2


Q ss_pred             HHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH--H
Q 013079          289 PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE--E  363 (450)
Q Consensus       289 ~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~--~  363 (450)
                      ....+.++.  +.+.+.+++++..++++++.+.|++++ +++..+.                  ...++++|.+++.  .
T Consensus       325 ~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~------------------~~~~~v~f~~~~~~~~  386 (502)
T 3hbx_A          325 VIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKD------------------EGVPLVAFSLKDSSCH  386 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCS------------------SSSSEEEEEESSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC------------------CCceEEEEEecCCCcC
Confidence            222223222  334566778888899999999999987 4654431                  1234899998742  1


Q ss_pred             HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH----HHHHHHHH
Q 013079          364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR----WSQFEKAL  439 (450)
Q Consensus       364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~----i~~l~~al  439 (450)
                      ....+.+.|...   | +.++..      ..|...              .....+||+++ ...+.+.    +++|.+++
T Consensus       387 ~~~~l~~~L~~~---G-i~v~~~------~~p~~~--------------~~~~~lRisv~-~~~t~edid~li~~L~~~l  441 (502)
T 3hbx_A          387 TEFEISDMLRRY---G-WIVPAY------TMPPNA--------------QHITVLRVVIR-EDFSRTLAERLVIDIEKVM  441 (502)
T ss_dssp             CHHHHHHHHHTT---T-CBCCEE------ECCTTC--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhC---C-cEEeec------cCCccc--------------CCceEEEEEeC-CCCCHHHHHHHHHHHHHHH
Confidence            234677777652   3 333211      111110              01367999999 6554444    45555555


Q ss_pred             HHhhhcC
Q 013079          440 SRMQDSG  446 (450)
Q Consensus       440 ~~~~~~~  446 (450)
                      +.+++.+
T Consensus       442 ~~l~~~~  448 (502)
T 3hbx_A          442 RELDELP  448 (502)
T ss_dssp             HHHHTCC
T ss_pred             HHHHhCc
Confidence            5554433

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.92  E-value=7.3e-24  Score=208.93  Aligned_cols=291  Identities=15%  Similarity=0.075  Sum_probs=192.2

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCE--EEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGH--VVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~--Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .++..+++++.+|+++|.+..++++|   |++|+.++++.++.+||+  |+++.+.|........ ... ..|.++..++
T Consensus        46 ~~~~~~~l~~~la~~~~~~~~i~~~~---g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~-~~~-~~g~~~~~v~  120 (359)
T 3pj0_A           46 NGAVIEDFETKIAKILGKQSAVFFPS---GTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDG-LKE-LQQITPLLLG  120 (359)
T ss_dssp             BSHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTH-HHH-HHCCEEEECS
T ss_pred             CCHHHHHHHHHHHHHhCCCcEEEeCC---HHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcch-HHH-hcCceEEecC
Confidence            46789999999999999988888999   999999999998888886  4455555443321100 000 2477888877


Q ss_pred             CC----CHHHHHHhhhcCCceEEEEecCCCCc-ccccCHHH---HHHHHHhcCCEEEEeCCCCCC-----CCCccC--CC
Q 013079          175 IS----DHEMVNSAIVQGRTKVLYFESISNPT-LAVANIPE---LSRLAHDKGVTVVVDNTFSPL-----VLSPAR--LG  239 (450)
Q Consensus       175 ~~----d~~~l~~ai~~~~t~lv~i~~~~Npt-G~v~~l~~---I~~la~~~gi~livD~~~~~~-----~~~~~~--~g  239 (450)
                      .+    |+++|+++  .+++++|++++|+||+ |.+.++++   |+++|+++|+++|+|++|...     ...+..  .+
T Consensus       121 ~~~~~~d~~~l~~~--~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~  198 (359)
T 3pj0_A          121 TANQLLTIDDIKSL--REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICAL  198 (359)
T ss_dssp             CTTSCCCHHHHHTC--SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTT
T ss_pred             CcCCCcCHHHHHhc--cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhcc
Confidence            54    89999886  5789999999999998 68877555   599999999999999987322     112221  26


Q ss_pred             CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079          240 ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR  319 (450)
Q Consensus       240 ~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~  319 (450)
                      .|+++.|+||++++++   ||+++.++++++.+...+.... .........++... ..++...++++++.++++++.+.
T Consensus       199 ~d~~~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~a~~-~~l~~~~~~~~~~~~~~~~l~~~  273 (359)
T 3pj0_A          199 FDSVYVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRYG-GDLISLYPYILSAD-YYFEKRIGKMAEYFEAAKGLAER  273 (359)
T ss_dssp             CSEEEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTT-CCCSCCHHHHHHHH-HHHHHHGGGHHHHHHHHHHHHHH
T ss_pred             CCEEEEeccccCCCcc---eEEEECCHHHHHHHHHHHHHhC-CCcchhHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence            7899999999998764   5888999999988876543110 01111222222111 12222224556677888899999


Q ss_pred             HHhCC-Ceee-CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          320 MKKLG-LKVL-YPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       320 L~~~~-~~v~-~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      |++++ .++. .|.                   .++++++.++.  ......+.+.|...   | +.+..|.....    
T Consensus       274 L~~~~g~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~l~~~l~~~---G-V~v~~g~~~~~----  326 (359)
T 3pj0_A          274 FNSCSGVKTVPEVP-------------------VSNMFHVYFENSADEIGAILTKIQDET---G-VGISGYLQEKS----  326 (359)
T ss_dssp             HHTSTTEEEESSSC-------------------SSSEEEEEESSCHHHHHHHHHHHHHHH---C-EECCSCCEEEE----
T ss_pred             HhhCCCceeeccCC-------------------cceEEEEEecCccchhHHHHHHHHHhc---C-cEecCCccccC----
Confidence            99874 4553 232                   45678888873  22356677777643   3 55555532110    


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                                       ...+.+|++++ ........+++.++++++.+
T Consensus       327 -----------------~~~~~~r~~i~-~~~~~~~~e~l~~~l~~l~~  357 (359)
T 3pj0_A          327 -----------------ADVCAFEVSVG-DAFAEIPAKNLELVFRCLEK  357 (359)
T ss_dssp             -----------------TTEEEEEEECC-TTGGGSCHHHHHHHHHHHHH
T ss_pred             -----------------CCceEEEEEec-CccccCCHHHHHHHHHHHHh
Confidence                             01367999999 75544445556666665543

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.92  E-value=4.7e-23  Score=207.61  Aligned_cols=317  Identities=15%  Similarity=0.143  Sum_probs=185.7

Q ss_pred             HHHHHhhcCCC--CCCCCCccccCCCChhHH-HHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCC
Q 013079           74 ETMRRMFAGEL--GPDRDFFIYSRHFNPTVL-NLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAART  149 (450)
Q Consensus        74 ~~~~~~~~~~~--~n~~~~~~y~r~~~~~~~-~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~  149 (450)
                      +++.+.+...+  ++|...|..+....+..+ .+++.+++++|.+.. ++++|   |++|+..++.+++++||+|+++.+
T Consensus        50 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~~~---Gs~a~~~al~~~~~~gd~Vi~~~~  126 (425)
T 3ecd_A           50 DAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQPHS---GAQANGAVMLALAKPGDTVLGMSL  126 (425)
T ss_dssp             HHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeecCc---hHHHHHHHHHHccCCCCEEEEccc
Confidence            55555554333  334333333332223334 455889999999887 55999   999999999999999999999999


Q ss_pred             CchhHHHHHHHh-CCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEE
Q 013079          150 LYGGTHALLTHF-FPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTV  222 (450)
Q Consensus       150 ~y~~~~~~~~~~-~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~l  222 (450)
                      +|++........ ... .++.+..++.+      |+++|++++..+++++|++++|+||  ...++++|.++|+++|+++
T Consensus       127 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~l  203 (425)
T 3ecd_A          127 DAGGHLTHGAKPALSG-KWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKL  203 (425)
T ss_dssp             -------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEE
T ss_pred             ccccceecchhhhhcc-cceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEE
Confidence            998832111111 111 23455566544      8999999994368999999999885  6789999999999999999


Q ss_pred             EEeCCC-CCCC-----CCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHH-H-HH
Q 013079          223 VVDNTF-SPLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK-V-AF  293 (450)
Q Consensus       223 ivD~~~-~~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~-~-a~  293 (450)
                      |+|++| .++.     ..+.. .+|+++.|+||++++  .+. |+++.+ +.+.+.+.......  ..+....+. . +.
T Consensus       204 i~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g--~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~  277 (425)
T 3ecd_A          204 MVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRG--PRG-GFVLTNDEEIAKKINSAVFPG--LQGGPLMHVIAGKA  277 (425)
T ss_dssp             EEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCC--CSC-EEEEESCHHHHHHHHHHHC-------CCCHHHHHHHH
T ss_pred             EEECcChHhhhhcccccCchh-cCcEEEecCCcccCC--CCc-EEEEeCCHHHHHHHHhhhCcc--ccCCccHHHHHHHH
Confidence            999995 2221     12222 378999999999953  454 998887 56766665543311  122222222 2 22


Q ss_pred             HHHc-cC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHH
Q 013079          294 ELSE-RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMN  370 (450)
Q Consensus       294 ~~~~-~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~  370 (450)
                      .+.. .. +.+....++..++++++.+.|++.+..+..|.                  +.+.++++.++. ......+..
T Consensus       278 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  339 (425)
T 3ecd_A          278 VAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGG------------------TDNHLLLVDLRPKGLKGAQVEQ  339 (425)
T ss_dssp             HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CSSSEEEEECGGGTCCHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCC------------------CCceEEEEEeCCCCCCHHHHHH
Confidence            2221 22 34556677788889999999998776654332                  245688888862 112344555


Q ss_pred             HhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC----HHHHHHHHHHHHHHh
Q 013079          371 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT----LDQRWSQFEKALSRM  442 (450)
Q Consensus       371 ~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~----~~~~i~~l~~al~~~  442 (450)
                      .|...   | +.+..++.      |....           .....+.|||+++ ..+    +++.++.+.++|.++
T Consensus       340 ~l~~~---g-i~v~~~~~------p~~~~-----------~~~~~~~iRi~~~-~~~~~~~~~e~i~~~~~~l~~~  393 (425)
T 3ecd_A          340 ALERA---G-ITCNKNGI------PFDPE-----------KPTITSGIRLGTP-AGTTRGFGAAEFREVGRLILEV  393 (425)
T ss_dssp             HHHHT---T-EECEECCC------TTCSS-----------CTTTCSEEEEESH-HHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHc---C-CEeccccc------CCCCC-----------CCCCccceeccch-hheeccCCHHHHHHHHHHHHHH
Confidence            55432   3 45443321      11000           0111467999965 422    256666666655544

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.92  E-value=2.1e-22  Score=201.06  Aligned_cols=303  Identities=16%  Similarity=0.113  Sum_probs=202.9

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-------ccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-------CSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ..+..+++++.+|+++|.+.++++++   |++|+++++.++       +++||+|+++.++|+++...+.     ..|.+
T Consensus        32 ~~~~~~~l~~~la~~~~~~~~i~~~s---Gt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~-----~~g~~  103 (390)
T 3b8x_A           32 MGEYVKQYETQFAKTFGSKYAVMVSS---GSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQ-----QYGLR  103 (390)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHH-----HTTCE
T ss_pred             CChHHHHHHHHHHHHHCCCcEEEECC---HHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHH-----HcCCE
Confidence            36789999999999999999999999   999999999998       7889999999999999988775     26888


Q ss_pred             EEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCCCccCCCC--
Q 013079          170 TTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVLSPARLGA--  240 (450)
Q Consensus       170 v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~~~~~~g~--  240 (450)
                      +.+++.+      |+++|++++ ++++++|+++   |++|...|+++|.++|+++|+++|+|++|+ +...+...+|.  
T Consensus       104 ~~~~~~~~~~~~~d~~~l~~~i-~~~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~  179 (390)
T 3b8x_A          104 VKFVDIDINTLNIDIESLKEAV-TDSTKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFG  179 (390)
T ss_dssp             EEEECBCTTTCSBCHHHHHHHC-CTTEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSS
T ss_pred             EEEEecCccccCcCHHHHHHHh-CcCCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCccccccc
Confidence            8888764      899999999 7789999986   467888999999999999999999999994 33334444454  


Q ss_pred             eEEEeCC--CCccccCccceEEEEEcCH-HHHHHHHHHhhhhh-h------------------------ccCCC--chHH
Q 013079          241 DVVVHSI--SKFISGGADIIAGAVCGPA-NLVNSMMDLHQGAL-M------------------------LLGPT--MNPK  290 (450)
Q Consensus       241 di~~~S~--sK~~g~~g~~igG~l~~~~-~~~~~l~~~~~~~~-~------------------------~~g~~--~~~~  290 (450)
                      |+.+.|+  +|.+++ |  .||+++.++ ++.+.+...+.+.. .                        ..|..  +...
T Consensus       180 ~~~~~s~~~~k~~~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  256 (390)
T 3b8x_A          180 LMGTFSSFYSNHIAT-M--EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEM  256 (390)
T ss_dssp             SEEEEECCTTSSSCS-S--SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHH
T ss_pred             ceEEEEccCCCCCcc-C--CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHH
Confidence            5555432  333432 2  258888765 67766665443110 0                        01211  3334


Q ss_pred             HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHH
Q 013079          291 VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANR  367 (450)
Q Consensus       291 ~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~  367 (450)
                      .++..+..++.+++..++..++++++.+.|++++. .+..+. ..               .....+++.++.  ......
T Consensus       257 ~aa~~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~---------------~~~~~~~i~~~~~~~~~~~~  320 (390)
T 3b8x_A          257 SGAIGIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET-GE---------------SSWFGFSFIIKKDSGVIRKQ  320 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC-SB---------------CCCCEEEEEECTTSCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC-CC---------------cccEEEEEEecCcCcccHHH
Confidence            44443334566667777788889999999988743 433221 00               112246667762  112456


Q ss_pred             HHHHhhcccccccccccc---cccccc-cccc-cccc-CCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          368 LMNYLQNYAQFGFMAVSL---GYYETL-MSCS-GSST-SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       368 ~~~~l~~~~~~g~i~vs~---G~~~s~-~~~~-~~~~-~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                      +.+.|...   | |.++.   |+.|+. -... .... ...++..+...    .+.||||++ ...++++++.+.++|
T Consensus       321 l~~~L~~~---g-I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~-~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          321 LVENLNSA---G-IECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLD----KNGLFVGNH-QIELFDEIDYLREVL  389 (390)
T ss_dssp             HHHHHHHT---T-BCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHH----HHEEEEECC-SSCCHHHHHHHHHHT
T ss_pred             HHHHHHHC---C-CCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHh----cCEEEeeCC-CCCCHHHHHHHHHhh
Confidence            77777643   3 56665   333332 1100 0000 12333333222    467999999 999999999888775

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.91  E-value=1.7e-23  Score=211.72  Aligned_cols=308  Identities=11%  Similarity=0.113  Sum_probs=195.4

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc---c----CCCEE
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC---S----SGGHV  144 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~---~----~gd~V  144 (450)
                      +++.+.++....++     ++++..+...++++.++++++  .+.++||+|   |++|++++++.+.   +    +||+|
T Consensus        66 ~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---gtea~~~ai~~~~~~~~~~g~~~~~v  137 (429)
T 1s0a_A           66 AAMKSQIDAMSHVM-----FGGITHAPAIELCRKLVAMTPQPLECVFLADS---GSVAVEVAMKMALQYWQAKGEARQRF  137 (429)
T ss_dssp             HHHHHHHHHCSCCC-----CSSEECHHHHHHHHHHHHHSCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred             HHHHHHHHhccccc-----ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCC---HHHHHHHHHHHHHHHhcccCCCCCeE
Confidence            66666654332211     223446678899999999994  578999999   9999999998653   2    58999


Q ss_pred             EEeCCCchhHHHHHHHhCC-----------CccCeeEEEeC---------CCCHHHHHHhhhc--CCceEEEEecC-CCC
Q 013079          145 VAARTLYGGTHALLTHFFP-----------RACNITTTFVD---------ISDHEMVNSAIVQ--GRTKVLYFESI-SNP  201 (450)
Q Consensus       145 i~~~~~y~~~~~~~~~~~~-----------~~~g~~v~~v~---------~~d~~~l~~ai~~--~~t~lv~i~~~-~Np  201 (450)
                      ++..|.|+++.........           ...++....++         ..|+++|++++.+  +++++|+++++ +||
T Consensus       138 i~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~  217 (429)
T 1s0a_A          138 LTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGA  217 (429)
T ss_dssp             EEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECT
T ss_pred             EEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCC
Confidence            9999999875443211100           00123333332         1378899998832  57888888887 899


Q ss_pred             cccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHH
Q 013079          202 TLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLV  269 (450)
Q Consensus       202 tG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~  269 (450)
                      ||.+.+    +++|.++|+++|+++|+||+|.++...       ......|++  |+||.+++ | .++ |+++++++++
T Consensus       218 tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~-G~~~i-G~~~~~~~~~  293 (429)
T 1s0a_A          218 GGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTG-GTMTL-SATLTTREVA  293 (429)
T ss_dssp             TTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-SSSCC-EEEEECHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccC-CCccc-eEEEeCHHHH
Confidence            998877    999999999999999999999655321       112346766  57899995 7 888 9999998888


Q ss_pred             HHHHHHhh----hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHh
Q 013079          270 NSMMDLHQ----GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMA  345 (450)
Q Consensus       270 ~~l~~~~~----~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~  345 (450)
                      +.+.....    ...+..++.+.+.++..++..++. ....++..++++++.+.|++++.   .|.+..           
T Consensus       294 ~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~-----------  358 (429)
T 1s0a_A          294 ETISNGEAGCFMHGPTFMGNPLACAAANASLAILES-GDWQQQVADIEVQLREQLAPARD---AEMVAD-----------  358 (429)
T ss_dssp             HHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHGGGGG---CTTEEE-----------
T ss_pred             HHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHhc---CCCEEE-----------
Confidence            87754210    011122233333333333322111 13345567778888888876421   111100           


Q ss_pred             ccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          346 NKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       346 ~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                        ..+.|.+++++++.......+...|...   | +.++..                            .+.||||++ .
T Consensus       359 --~~~~g~~~~~~~~~~~~~~~l~~~l~~~---G-i~v~~~----------------------------~~~iRis~~-~  403 (429)
T 1s0a_A          359 --VRVLGAIGVVETTHPVNMAALQKFFVEQ---G-VWIRPF----------------------------GKLIYLMPP-Y  403 (429)
T ss_dssp             --EEEETTEEEEEESSCBCHHHHHHHHHHT---T-EECCCB----------------------------TTEEEECCC-T
T ss_pred             --EEEeeEEEEEEECCcccHHHHHHHHHHC---C-CEEecc----------------------------CCEEEEECC-C
Confidence              0024668999987422244566666532   2 332210                            267999998 7


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q 013079          426 GTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       426 ~~~~~~i~~l~~al~~~~  443 (450)
                      ..+++.++.+.++|.++.
T Consensus       404 ~~t~e~i~~~~~~l~~~~  421 (429)
T 1s0a_A          404 IILPQQLQRLTAAVNRAV  421 (429)
T ss_dssp             TCCHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            777777888877777653

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.91  E-value=1.1e-23  Score=211.04  Aligned_cols=287  Identities=17%  Similarity=0.138  Sum_probs=190.8

Q ss_pred             HHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCe--eEEEeCC-----
Q 013079          104 LSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNI--TTTFVDI-----  175 (450)
Q Consensus       104 l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~v~~v~~-----  175 (450)
                      +++.+++++|.+.. +++++   |++|+.+++.+++++||+|+++.++|+++.... .... ..|.  ....++.     
T Consensus        74 ar~~la~~~g~~~~~i~~~s---Gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~-~~g~~~~~~~~~~~~~~~  148 (407)
T 2dkj_A           74 AIERAKALFGAAWANVQPHS---GSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVN-FSGKLYKVVSYGVRPDTE  148 (407)
T ss_dssp             HHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTS-HHHHHSEEEEECCCTTTS
T ss_pred             HHHHHHHHhCCCcceEEecc---hHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHH-hcCceEEEEecCCCcccC
Confidence            34599999998876 66788   889999999999999999999999998774211 0011 1233  3344421     


Q ss_pred             -CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-CC-C----CccCCCCeEEEeCCC
Q 013079          176 -SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LV-L----SPARLGADVVVHSIS  248 (450)
Q Consensus       176 -~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~-~----~~~~~g~di~~~S~s  248 (450)
                       .|+++|++++...++++|++++|+||  .+.|+++|.++|+++|+++|+|++|+. +. .    .+.. .+|+++.|+|
T Consensus       149 ~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~s  225 (407)
T 2dkj_A          149 LIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVVTSTTH  225 (407)
T ss_dssp             SCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEEEEESS
T ss_pred             ccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEEEEecc
Confidence             38999999993248999999889997  678999999999999999999999843 31 1    1122 3799999999


Q ss_pred             CccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHH-HHHHHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          249 KFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPK-VAFELSER--IPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       249 K~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~-~a~~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      |+++  |.++ |+++++ +++++.+......+. ..+...... ++..++..  ...+....+++.++++++.+.|++++
T Consensus       226 K~l~--g~~~-G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g  301 (407)
T 2dkj_A          226 KTLR--GPRG-GLILSNDPELGKRIDKLIFPGI-QGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG  301 (407)
T ss_dssp             GGGC--CCSC-EEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCC--CCCc-eEEEECCHHHHHHHHhhhcccc-cCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9775  4555 999988 788888876554221 122222222 22222222  23456677778889999999999886


Q ss_pred             CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCC
Q 013079          325 LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL  403 (450)
Q Consensus       325 ~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~  403 (450)
                      .++..+.                  +.|+++++.++.. .....+.+.|..   .| +.+..|+...       ....  
T Consensus       302 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~---~g-i~v~~~~~~~-------~~~~--  350 (407)
T 2dkj_A          302 YRIVTGG------------------TDNHLFLVDLRPKGLTGKEAEERLDA---VG-ITVNKNAIPF-------DPKP--  350 (407)
T ss_dssp             CEEGGGS------------------CSSSEEEEECGGGTCCHHHHHHHHHH---TT-EECEECCCTT-------CSSC--
T ss_pred             ceeecCC------------------CCceEEEEECcccCCCHHHHHHHHHH---cC-ceecCCcCcc-------cccc--
Confidence            6554321                  2467899998731 124566666654   23 5555553210       0000  


Q ss_pred             CHHHHHhcCCCCCeEEEEeC-------CCCCHHHHHHHHHHHHHH
Q 013079          404 NAEEKALAGISAGLVRMSVG-------YLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       404 ~~~~~~~~g~~~~~iRiS~g-------~~~~~~~~i~~l~~al~~  441 (450)
                              ...++.+|||++       ..++.+.+++.|.+++.+
T Consensus       351 --------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          351 --------PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             --------TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             --------ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence                    011468999983       146677777777777765

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.91  E-value=3.8e-23  Score=207.86  Aligned_cols=216  Identities=17%  Similarity=0.141  Sum_probs=145.5

Q ss_pred             HHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC-----C
Q 013079          103 NLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI-----S  176 (450)
Q Consensus       103 ~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~-----~  176 (450)
                      .+++.+++++|.+.. +++++   |++|+.+++.+++++||+|+++.++|+++..........-.++.+..++.     .
T Consensus        75 ~~~~~la~~~g~~~~~i~~~s---Gt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  151 (417)
T 3n0l_A           75 LAIERCKKLFNCKFANVQPNS---GSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRI  151 (417)
T ss_dssp             HHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSC
T ss_pred             HHHHHHHHHhCCCCcceEecc---HHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCc
Confidence            456689999998876 77888   99999999999999999999999999876542211100002444555544     3


Q ss_pred             CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCC-----CCccCCCCeEEEeCCCCc
Q 013079          177 DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV-----LSPARLGADVVVHSISKF  250 (450)
Q Consensus       177 d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~-----~~~~~~g~di~~~S~sK~  250 (450)
                      |+++|++++..+++++|++++++|  |.+.|+++|.++|+++|+++|+|++| .+..     ..+.. +.|+++.|+||+
T Consensus       152 d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~  228 (417)
T 3n0l_A          152 DYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKT  228 (417)
T ss_dssp             CHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTT
T ss_pred             CHHHHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccc
Confidence            899999999336899999888876  88999999999999999999999996 2221     11111 479999999999


Q ss_pred             cccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCCCchHHHHHH-HHcc-C-CcHHHHHHHHHHHHHHHHHHHHhCCCe
Q 013079          251 ISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSER-I-PHLGLRMKEHCHRALIFARRMKKLGLK  326 (450)
Q Consensus       251 ~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~-~-~~l~~~~~~~~~~~~~l~~~L~~~~~~  326 (450)
                      ++  |.+. |+++++ +++.+.+........ ..++.....++.. ++.. . +.+....++..++++++.+.|++.+..
T Consensus       229 l~--g~~~-G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~  304 (417)
T 3n0l_A          229 LR--GPRG-GIIMTNDEELAKKINSAIFPGI-QGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFK  304 (417)
T ss_dssp             TC--SCSC-EEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             cC--CCCe-eEEEECCHHHHHHHhhhhCCcc-cCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCce
Confidence            84  4454 999887 788888766544221 1122222222222 2222 2 345666677788889999999886665


Q ss_pred             ee
Q 013079          327 VL  328 (450)
Q Consensus       327 v~  328 (450)
                      +.
T Consensus       305 ~~  306 (417)
T 3n0l_A          305 LV  306 (417)
T ss_dssp             EG
T ss_pred             ec
Confidence            43

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.91  E-value=2.7e-23  Score=211.85  Aligned_cols=288  Identities=13%  Similarity=-0.004  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHhCCC-------eEEEecChHHHHHHHHHHHHHhcc--------CC-----CEEEEeCCCchhHHHHHHH
Q 013079          101 VLNLSRQMAALEGTE-------AAYCTASDKAGMSAISSVLMQLCS--------SG-----GHVVAARTLYGGTHALLTH  160 (450)
Q Consensus       101 ~~~l~~~iA~l~g~~-------~~~~tsg~~~gt~ai~~al~~l~~--------~g-----d~Vi~~~~~y~~~~~~~~~  160 (450)
                      .+++++.+|+++|.+       .+++|+|   ||+|+.+++.++..        +|     ++|+++. .|.++...+. 
T Consensus        83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~g---gtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~-  157 (452)
T 2dgk_A           83 DLRCVNMVADLWHAPAPKNGQAVGTNTIG---SSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFAR-  157 (452)
T ss_dssp             HHHHHHHHHHHTTCCCCTTSCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCcccccCCceEEeCC---HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHH-
Confidence            466777789999875       2799999   99999999987753        55     5899999 9988887774 


Q ss_pred             hCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc------CCEEEEeCCC
Q 013079          161 FFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK------GVTVVVDNTF  228 (450)
Q Consensus       161 ~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~------gi~livD~~~  228 (450)
                          ..|+++++++.+      |+++|++++ +++|++|++++|+||||.+.|+++|+++|+++      |+++|+|++|
T Consensus       158 ----~~G~~v~~v~~~~~~~~~d~~~l~~~i-~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~  232 (452)
T 2dgk_A          158 ----YWDVELREIPMRPGQLFMDPKRMIEAC-DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS  232 (452)
T ss_dssp             ----HTTCEEEECCCBTTBCSCCHHHHHHHC-CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTT
T ss_pred             ----HcCceEEEEecCCCCCeECHHHHHHHH-hhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEccc
Confidence                368899888764      899999999 88899999999999999999999999999995      9999999999


Q ss_pred             CCCCC---C---ccC---CCCeEEEeCCCCccccCccceEEEEEcC-HHHH-HHHHHHhhhhhh-------ccCCCc--h
Q 013079          229 SPLVL---S---PAR---LGADVVVHSISKFISGGADIIAGAVCGP-ANLV-NSMMDLHQGALM-------LLGPTM--N  288 (450)
Q Consensus       229 ~~~~~---~---~~~---~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~-~~l~~~~~~~~~-------~~g~~~--~  288 (450)
                      +.+..   .   +..   .++|+++.|+||++. .+.++ |+++.+ +.++ +.+. ....+..       ..+...  .
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~-~~~~~-G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~  309 (452)
T 2dgk_A          233 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGL-APLGC-GWVIWRDEEALPQELV-FNVDYLGGQIGTFAINFSRPAGQ  309 (452)
T ss_dssp             GGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTC-CCSSC-EEEEESSGGGSCGGGC-EEECCTTCCEEECCSCCSCBCHH
T ss_pred             HHHHHHhhCccchhhcCCCCCcEEEECcccccC-CCCCe-EEEEEcCHHHHHHHhc-cCccccCCCCCCcccCCCChhHH
Confidence            54321   1   111   278999999999764 34456 877664 4333 3321 1111100       011111  1


Q ss_pred             HHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH--
Q 013079          289 PKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE--  363 (450)
Q Consensus       289 ~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~--  363 (450)
                      ....+.++.  +.+.+.++.++..++++++.+.|++++ +++..|+.+.               ...++++|.+++..  
T Consensus       310 ~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~---------------~~~~~v~f~~~~~~~~  374 (452)
T 2dgk_A          310 VIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD---------------EGIPAVCFKLKDGEDP  374 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTT---------------TBSSEEEEEECTTCCC
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCC---------------CCeEEEEEEecCcccc
Confidence            222222222  234466677788899999999999886 4655443110               13458999987421  


Q ss_pred             --HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          364 --KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       364 --~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                        ....+.+.|...   | +.++..      ..+...              -..+.+|||++ ...+++.++.|.++|.+
T Consensus       375 ~~~~~~l~~~L~~~---G-i~v~~~------~~~~~~--------------~~~~~lRis~~-~~~t~e~id~li~~l~~  429 (452)
T 2dgk_A          375 GYTLYDLSERLRLR---G-WQVPAF------TLGGEA--------------TDIVVMRIMCR-RGFEMDFAELLLEDYKA  429 (452)
T ss_dssp             SCCHHHHHHHHHHT---T-CBCCEE------ECSTTC--------------TTCEEEEEECC-TTCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhc---C-Ceeeee------eCCccc--------------CCeEEEEEEec-CCCCHHHHHHHHHHHHH
Confidence              135677777642   2 332211      001100              01458999999 75555555555544443

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.91  E-value=8.3e-23  Score=205.00  Aligned_cols=222  Identities=13%  Similarity=0.122  Sum_probs=157.1

Q ss_pred             CccccCCCChhHHHHHHHHHHHh-C---C----C--eEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHH
Q 013079           90 FFIYSRHFNPTVLNLSRQMAALE-G---T----E--AAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHAL  157 (450)
Q Consensus        90 ~~~y~r~~~~~~~~l~~~iA~l~-g---~----~--~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~  157 (450)
                      .+.|+.  .....+||+.+|+++ +   .    +  .+++|+|   |++|+.+++..++.  + |+|++++|.|+++...
T Consensus        65 ~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G---~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~  138 (405)
T 3k7y_A           65 EKPYLL--GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIG---GTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNM  138 (405)
T ss_dssp             CCCCCT--TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEH---HHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHH
T ss_pred             CCCCCC--CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCc---hHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHH
Confidence            355653  223456777777765 2   1    3  3589999   99999999998877  8 9999999999999988


Q ss_pred             HHHhCCCccCeeEEEeCC-C------CHHHHHHhhhc-CCceEEEEecC-CCCcccccC---HHHHHHHHHhcCCEEEEe
Q 013079          158 LTHFFPRACNITTTFVDI-S------DHEMVNSAIVQ-GRTKVLYFESI-SNPTLAVAN---IPELSRLAHDKGVTVVVD  225 (450)
Q Consensus       158 ~~~~~~~~~g~~v~~v~~-~------d~~~l~~ai~~-~~t~lv~i~~~-~NptG~v~~---l~~I~~la~~~gi~livD  225 (450)
                      +.     ..|.++..++. +      |++++++++.+ +++++|+++++ |||||.+.+   +++|+++|+++++++|+|
T Consensus       139 ~~-----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~D  213 (405)
T 3k7y_A          139 IE-----SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFD  213 (405)
T ss_dssp             HH-----TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HH-----HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEe
Confidence            75     36888887764 1      88999998833 46788888765 899999976   668889999999999999


Q ss_pred             CCCCCCCCCc-------c----CC-CCeEEEeCCCCccccCccceEEEEE---cCHHHHHHHHH----HhhhhhhccCCC
Q 013079          226 NTFSPLVLSP-------A----RL-GADVVVHSISKFISGGADIIAGAVC---GPANLVNSMMD----LHQGALMLLGPT  286 (450)
Q Consensus       226 ~~~~~~~~~~-------~----~~-g~di~~~S~sK~~g~~g~~igG~l~---~~~~~~~~l~~----~~~~~~~~~g~~  286 (450)
                      ++|..+.+..       .    .. ...+++.|+||.|+++|+|+ ||++   .++++++.+..    ... ......+.
T Consensus       214 e~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRi-G~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~  291 (405)
T 3k7y_A          214 IAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERA-GALHIVCKNQEEKKIVFNNLCFIVR-KFYSSPVI  291 (405)
T ss_dssp             ESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTE-EEEEEECSSHHHHHHHHHHHHHHHH-TTTSSCCH
T ss_pred             cCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccc-eEEEEEeCCHHHHHHHHHHHHHHHh-cccCCCcH
Confidence            9997665431       0    11 46799999999999999999 9974   35666655532    211 11112223


Q ss_pred             chHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHH----hCC
Q 013079          287 MNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMK----KLG  324 (450)
Q Consensus       287 ~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~----~~~  324 (450)
                      ..+.++..++..       .+++....+++.++++.+.+.|+    +++
T Consensus       292 ~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g  340 (405)
T 3k7y_A          292 HTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYN  340 (405)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            333333333332       12233344567899999999998    765

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.91  E-value=5.6e-23  Score=207.42  Aligned_cols=281  Identities=16%  Similarity=0.158  Sum_probs=184.3

Q ss_pred             CCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHhCC------C
Q 013079           95 RHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLCS-SGGHVVAARTLYGGTHALLTHFFP------R  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~~-~gd~Vi~~~~~y~~~~~~~~~~~~------~  164 (450)
                      ++..+...++++++++++|.   +.++||+|   |++|++++++.+.. +||+|++.+|.|++..........      .
T Consensus        82 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---g~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~  158 (419)
T 2eo5_A           82 DFYNIPQLELAKKLVTYSPGNFQKKVFFSNS---GTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRS  158 (419)
T ss_dssp             CSCCHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGC
T ss_pred             ccCCHHHHHHHHHHHHhCCCCcCCEEEEeCc---hHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCcccccc
Confidence            45567789999999999985   47899999   99999999987543 389999999999865443221110      0


Q ss_pred             c---cCeeEEEeCCC---------------------CHHHHH-Hhhhc----CCceEEEEecCCCCcccccC----HHHH
Q 013079          165 A---CNITTTFVDIS---------------------DHEMVN-SAIVQ----GRTKVLYFESISNPTLAVAN----IPEL  211 (450)
Q Consensus       165 ~---~g~~v~~v~~~---------------------d~~~l~-~ai~~----~~t~lv~i~~~~NptG~v~~----l~~I  211 (450)
                      .   ....+..++.+                     |+++|+ +++.+    +++++|+++++|||||.+.+    +++|
T Consensus       159 ~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l  238 (419)
T 2eo5_A          159 IVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAEL  238 (419)
T ss_dssp             SSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHH
T ss_pred             ccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHH
Confidence            0   11245555443                     367888 88832    46778888777788998766    9999


Q ss_pred             HHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHhhhhhhcc
Q 013079          212 SRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLHQGALMLL  283 (450)
Q Consensus       212 ~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~~~~~~~~  283 (450)
                      .++|+++|+++|+||+|.++....       .....|++  |+||.+++ | +|+ ||++++++++ .+ .... ..+..
T Consensus       239 ~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~ri-G~~~~~~~~~-~~-~~~~-~~t~~  311 (419)
T 2eo5_A          239 QKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPI-GATIFRKDLD-FK-PGMH-SNTFG  311 (419)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCC-EEEEEEGGGC-CC--------CCC
T ss_pred             HHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-Cccce-EEEEEchHhh-cC-Cccc-CCCCC
Confidence            999999999999999996553211       12245665  68999995 8 998 8888888777 65 3111 11223


Q ss_pred             CCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CH
Q 013079          284 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TE  362 (450)
Q Consensus       284 g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~  362 (450)
                      ++.+.+.++..++.   .+.+..++..++++++.+.|+++ .... +                   +.|.++++++. ..
T Consensus       312 ~n~~~~~aa~aal~---~~~~~~~~~~~~~~~l~~~L~~~-~~~~-~-------------------~~g~~~~i~~~~~~  367 (419)
T 2eo5_A          312 GNALACAIGSKVID---IVKDLLPHVNEIGKIFAEELQGL-ADDV-R-------------------GIGLAWGLEYNEKK  367 (419)
T ss_dssp             CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTS-SSEE-E-------------------EETTEEEEECSCHH
T ss_pred             CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh-hhhe-E-------------------eeeEEEEEEEecCc
Confidence            33333433333332   23335566788888999998765 2111 1                   35678999984 32


Q ss_pred             HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          363 EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       363 ~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .... +.+.|..   .| +.++.+                         +  ++.||||++ ...+++.++.+.++|.++
T Consensus       368 ~~~~-~~~~l~~---~G-v~v~~~-------------------------~--~~~lRis~~-~~~t~e~i~~~l~~l~~~  414 (419)
T 2eo5_A          368 VRDR-IIGESFK---RG-LLLLPA-------------------------G--RSAIRVIPP-LVISEEEAKQGLDILKKV  414 (419)
T ss_dssp             HHHH-HHHHHHH---TT-EECEEE-------------------------T--TTEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred             cHHH-HHHHHHH---CC-CEEecC-------------------------C--CCEEEEECC-CCCCHHHHHHHHHHHHHH
Confidence            3345 7776653   23 333322                         1  368999998 766666666666666554

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.91  E-value=7.5e-24  Score=217.72  Aligned_cols=256  Identities=16%  Similarity=0.138  Sum_probs=163.7

Q ss_pred             cccCccccCCH-HHHHHhhcCCC--CCCCCCccccC--CCChhHHHHHHHHHHHhCCCe-----EEEecChHHHHHHHHH
Q 013079           63 EASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSR--HFNPTVLNLSRQMAALEGTEA-----AYCTASDKAGMSAISS  132 (450)
Q Consensus        63 ~~att~~~~~~-~~~~~~~~~~~--~n~~~~~~y~r--~~~~~~~~l~~~iA~l~g~~~-----~~~tsg~~~gt~ai~~  132 (450)
                      ..+.+++.+.+ +++.+.+...+  |+|.+.| |+.  ......+.+++++++++|++.     .+++++   |++++.+
T Consensus        50 ~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~-y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~s---Gs~an~~  125 (483)
T 1rv3_A           50 IASENFASRAVLEALGSCLNNKYSLGYPGQRY-YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYS---GSPANFA  125 (483)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGTCCCCEETTEES-SSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS---HHHHHHH
T ss_pred             EcCCCCCCHHHHHHHHHHHhccCcccCCCccc-cCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECC---cHHHHHH
Confidence            34555544433 66666665555  4554322 221  112233456699999999863     255555   6688888


Q ss_pred             HHHHhccCCCEEEEeCCCchhHHHHHHHhC---CCccC--eeEEEeCC------CCHHHHHHhhhcCCceEEEEecCCCC
Q 013079          133 VLMQLCSSGGHVVAARTLYGGTHALLTHFF---PRACN--ITTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNP  201 (450)
Q Consensus       133 al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~---~~~~g--~~v~~v~~------~d~~~l~~ai~~~~t~lv~i~~~~Np  201 (450)
                      ++.+++++||+|++++++|+++........   ....|  +.+..++.      .|+++|++++..++|++|++ +++|+
T Consensus       126 ~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~  204 (483)
T 1rv3_A          126 VYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCY  204 (483)
T ss_dssp             HHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC
T ss_pred             HHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcC
Confidence            899999999999999999988754321000   00122  34444421      28999999993278999999 88999


Q ss_pred             cccccCHHHHHHHHHhcCCEEEEeCCCC-CC-----CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHH--------
Q 013079          202 TLAVANIPELSRLAHDKGVTVVVDNTFS-PL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN--------  267 (450)
Q Consensus       202 tG~v~~l~~I~~la~~~gi~livD~~~~-~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~--------  267 (450)
                      + .+.|+++|.++|+++|+++|+|++|. ++     ...+.. ++|+++.|+||++++  .+. |+++.+++        
T Consensus       205 ~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div~~s~~K~l~G--prg-G~i~~~~~~~~~~~~~  279 (483)
T 1rv3_A          205 S-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVVTTTTHKTLRG--CRA-GMIFYRRGVRSVDPKT  279 (483)
T ss_dssp             C-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEEEEESSGGGCC--CSC-EEEEEECSBCC-----
T ss_pred             C-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEEEecCcccCCC--CCc-eEEEEcchhhhhcccc
Confidence            8 89999999999999999999999972 22     112222 689999999998853  444 99887653        


Q ss_pred             -------HHHHHHHHhhhhhhccCCCc-hHHHHH-HHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079          268 -------LVNSMMDLHQGALMLLGPTM-NPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGLKVLYP  330 (450)
Q Consensus       268 -------~~~~l~~~~~~~~~~~g~~~-~~~~a~-~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p  330 (450)
                             +.+.+.......  ..|+.. ...++. .++..  ...+....+++.++++++.+.|+++++++..|
T Consensus       280 g~~~~y~~~~~~~~~~~~~--~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~  351 (483)
T 1rv3_A          280 GKEILYNLESLINSAVFPG--LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTG  351 (483)
T ss_dssp             --CCBCCHHHHHHHHHTTT--TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGG
T ss_pred             CcchhhHHHHHhhhhcCCc--ccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccC
Confidence                   333333221111  123222 222222 12222  23456677778999999999999887766544

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.91  E-value=4.3e-23  Score=209.40  Aligned_cols=305  Identities=13%  Similarity=0.157  Sum_probs=192.3

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh--CC-CeEEEecChHHHHHHHHHHHHHh--ccCCCEEEEeC
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE--GT-EAAYCTASDKAGMSAISSVLMQL--CSSGGHVVAAR  148 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~--g~-~~~~~tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~  148 (450)
                      +++.+.+... .    .+.+.++..+..+++++.+++++  +. +.++||+|   |++|+..+++.+  ..++++||+.+
T Consensus        66 ~a~~~~~~~~-~----~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---gsea~~~al~~~~~~~~~~~vi~~~  137 (439)
T 3dxv_A           66 AAVSAAAANP-A----GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHS---GSDANEAAYRAIVKATGRSGVIAFA  137 (439)
T ss_dssp             HHHHHHHHSC-S----CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESS---HHHHHHHHHHHHHHHHSCCEEEEET
T ss_pred             HHHHHHHHhc-c----CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCC---HHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            5555555432 1    23345667788999999999998  45 68999999   999999999875  34567899999


Q ss_pred             CCchhHHHHHHHhCCC----------ccCeeEEEeCCC----------CHHHHHHhhh---cCCceEEEEecCCCCcccc
Q 013079          149 TLYGGTHALLTHFFPR----------ACNITTTFVDIS----------DHEMVNSAIV---QGRTKVLYFESISNPTLAV  205 (450)
Q Consensus       149 ~~y~~~~~~~~~~~~~----------~~g~~v~~v~~~----------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v  205 (450)
                      +.|++...........          .....+..++.+          |+++|++++.   .+++++|++++++|++|.+
T Consensus       138 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~  217 (439)
T 3dxv_A          138 GAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLI  217 (439)
T ss_dssp             TCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSB
T ss_pred             CCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCc
Confidence            9997755433211000          000012334433          5899999883   4578999999999999999


Q ss_pred             cC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          206 AN----IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       206 ~~----l~~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                      .+    +++|.++|++||+++|+||+|+++...       ......|++  |+||.+++ |+|+ |++++++++++.+..
T Consensus       218 ~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~ri-G~~~~~~~~~~~~~~  293 (439)
T 3dxv_A          218 VPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPL-SAVIAPAEILDCASA  293 (439)
T ss_dssp             CCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSCC-EEEEEEHHHHTSCSS
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Ccce-EEEEECHHHHhhhcC
Confidence            88    999999999999999999999655321       112245666  78999995 8998 999999888876654


Q ss_pred             HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCC
Q 013079          275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYG  350 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g  350 (450)
                      ... .... ++.+.+.++..++...+. ....++..++++++.+.|++    ++.....+                   +
T Consensus       294 ~~~-~~t~-~~~~~~~aa~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~  351 (439)
T 3dxv_A          294 FAM-QTLH-GNPISAAAGLAVLETIDR-DDLPAMAERKGRLLRDGLSELAKRHPLIGDIR-------------------G  351 (439)
T ss_dssp             SSC-CTTT-TCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------E
T ss_pred             CCc-CCCc-ccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------E
Confidence            322 1122 333333333333221111 22334455555566666654    33311111                   3


Q ss_pred             cCcEEEEEe--------CCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 013079          351 FGGLLCLDM--------ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV  422 (450)
Q Consensus       351 ~g~~~~~~l--------~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~  422 (450)
                      .|.++++.+        +.......+.+.+...   | +.+..|                         +...+.|||++
T Consensus       352 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------~~~~~~iRi~~  402 (439)
T 3dxv_A          352 RGLACGMELVCDRQSREPARAETAKLIYRAYQL---G-LVVYYV-------------------------GMNGNVLEFTP  402 (439)
T ss_dssp             ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHH---T-EECEEE-------------------------STTSCEEEECC
T ss_pred             EEEEEEEEEecCccccCCCHHHHHHHHHHHHHC---C-cEEeec-------------------------CCCCCEEEEEC
Confidence            577899988        4455566777776542   3 333322                         11147899998


Q ss_pred             CCCCCH----HHHHHHHHHHHHHh
Q 013079          423 GYLGTL----DQRWSQFEKALSRM  442 (450)
Q Consensus       423 g~~~~~----~~~i~~l~~al~~~  442 (450)
                      + ...+    ++.++.|.+++.++
T Consensus       403 ~-~~~t~e~i~~~l~~l~~~l~~~  425 (439)
T 3dxv_A          403 P-LTITETDIHKALDLLDRAFSEL  425 (439)
T ss_dssp             C-TTCCHHHHHHHHHHHHHHHHTG
T ss_pred             C-CCCCHHHHHHHHHHHHHHHHHH
Confidence            7 5444    44445555555544

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.91  E-value=1.2e-22  Score=205.05  Aligned_cols=292  Identities=13%  Similarity=0.126  Sum_probs=183.0

Q ss_pred             CCCChhHHHHHHHHHHHh-C-C-CeEEEecChHHHHHHHHHHHH---HhccCCCEEEEeCCCchhHHHHHHHhCCC----
Q 013079           95 RHFNPTVLNLSRQMAALE-G-T-EAAYCTASDKAGMSAISSVLM---QLCSSGGHVVAARTLYGGTHALLTHFFPR----  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~-g-~-~~~~~tsg~~~gt~ai~~al~---~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~----  164 (450)
                      ++..+...++++.||+++ + . +.+++|+|   |++|++++++   .+.++| +|++.+|.|++...........    
T Consensus        80 ~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g---~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~  155 (426)
T 1sff_A           80 VLAYEPYLELCEIMNQKVPGDFAKKTLLVTT---GSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPY  155 (426)
T ss_dssp             TEECHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTT
T ss_pred             ccCCHHHHHHHHHHHHhCCcccccEEEEeCc---hHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCcccc
Confidence            345678899999999999 5 4 67899999   9999999988   566666 8999999998754322122110    


Q ss_pred             --ccC---eeEEEeCCC----------CHHHHHHhhhc----CCceEEEEec-CCCCcccccC----HHHHHHHHHhcCC
Q 013079          165 --ACN---ITTTFVDIS----------DHEMVNSAIVQ----GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKGV  220 (450)
Q Consensus       165 --~~g---~~v~~v~~~----------d~~~l~~ai~~----~~t~lv~i~~-~~NptG~v~~----l~~I~~la~~~gi  220 (450)
                        ..+   ..+..++.+          |+++|++++..    +++++|++++ ++| ||.+.+    +++|.++|+++|+
T Consensus       156 ~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~  234 (426)
T 1sff_A          156 SAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGI  234 (426)
T ss_dssp             TTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTC
T ss_pred             ccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCC
Confidence              011   024445442          68889988832    5678888865 466 997777    9999999999999


Q ss_pred             EEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH
Q 013079          221 TVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF  293 (450)
Q Consensus       221 ~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~  293 (450)
                      ++|+|++|+++...       .....+|++  |+||.+++ |+|+ ||+++++++++.+..... .....++.+.+.++.
T Consensus       235 ~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-Glri-G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~  309 (426)
T 1sff_A          235 MLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPL-AGVTGRAEVMDAVAPGGL-GGTYAGNPIACVAAL  309 (426)
T ss_dssp             EEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCC-EEEEEEHHHHTTSCTTSB-CCSSSSCHHHHHHHH
T ss_pred             EEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCce-EEEEEcHHHHhhhccCCc-CcCCCCCHHHHHHHH
Confidence            99999999655321       111235655  78899997 9998 999998888776643211 111222323333333


Q ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHH
Q 013079          294 ELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKA  365 (450)
Q Consensus       294 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~  365 (450)
                      .++..++. ....++..++++++.+.|++++..  .|...             ...+.|.++++.+.        .....
T Consensus       310 aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~-------------~~~~~g~~~~~~~~~~~~~~~~~~~~~  373 (426)
T 1sff_A          310 EVLKVFEQ-ENLLQKANDLGQKLKDGLLAIAEK--HPEIG-------------DVRGLGAMIAIELFEDGDHNKPDAKLT  373 (426)
T ss_dssp             HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHT--CTTEE-------------EEEEETTEEEEEEBGGGCTTSBCHHHH
T ss_pred             HHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCeE-------------EEEEEEEEEEEEEecCccccCCChHHH
Confidence            22222111 123445567777777777653200  01000             00024679999994        23345


Q ss_pred             HHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       366 ~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ..+.+.|...   | +.+..|+.                         .++.||||++ ...+++.++.+.++|.++
T Consensus       374 ~~l~~~l~~~---g-i~v~~~~~-------------------------~~~~iRi~~~-~~~~~~~i~~~~~~l~~~  420 (426)
T 1sff_A          374 AEIVARARDK---G-LILLSCGP-------------------------YYNVLRILVP-LTIEDAQIRQGLEIISQC  420 (426)
T ss_dssp             HHHHHHHHHT---T-EECEEEST-------------------------TSCEEEECCC-TTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC---C-cEEecCCC-------------------------CCCEEEEECC-ccCCHHHHHHHHHHHHHH
Confidence            6677777642   3 45444321                         1478999998 655555555555555443

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.91  E-value=2.9e-23  Score=204.57  Aligned_cols=312  Identities=10%  Similarity=0.015  Sum_probs=208.2

Q ss_pred             cccCccccCCH-HHHHHhhcCCCCCCCCCccccCC---CChhHHHHHHHHHHHhCCC---eEEE-ecChHHHHHHHHHHH
Q 013079           63 EASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRH---FNPTVLNLSRQMAALEGTE---AAYC-TASDKAGMSAISSVL  134 (450)
Q Consensus        63 ~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~---~~~~~~~l~~~iA~l~g~~---~~~~-tsg~~~gt~ai~~al  134 (450)
                      ..++|++.+++ ++|.+.+...++||+|.|..+..   ....++++|+.+++++|++   .++| |+|   ||+++++++
T Consensus        10 ~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~---~T~a~n~~~   86 (361)
T 3m5u_A           10 SAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGG---ASLQFAMIP   86 (361)
T ss_dssp             CSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSH---HHHHHHHHH
T ss_pred             cCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCc---HHHHHHHHH
Confidence            44667766664 88888888888999987655443   3467899999999999973   5777 999   999999999


Q ss_pred             HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC
Q 013079          135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN  207 (450)
Q Consensus       135 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~  207 (450)
                      .+++ +||++++....+.+.. .. ....+ .|+++++++.+       +++.  + + +++|++|++.+..|.||.+.|
T Consensus        87 ~~~~-~~~~~~~i~~~~~~~~-~~-~~a~~-~G~~v~~~~~~~~g~~~~~~~~--~-l-~~~t~lv~~~~~e~~tG~~~~  158 (361)
T 3m5u_A           87 MNLA-LNGVCEYANTGVWTKK-AI-KEAQI-LGVNVKTVASSEESNFDHIPRV--E-F-SDNADYAYICSNNTIYGTQYQ  158 (361)
T ss_dssp             HHHC-CSSCEEEEECSHHHHH-HH-HHHHH-TTCCEEEEEECTTTTSCSCCCC--C-C-CTTSSEEEEESEETTTTEECS
T ss_pred             HhcC-CCCeEEEEeCCHHHHH-HH-HHHHH-cCCceEEEecccCcCCCcCChh--h-c-CCCCCEEEEeCCCCCcceeCC
Confidence            9988 7886532222222222 11 22223 57778777543       3344  4 7 789999999888888899876


Q ss_pred             HHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH-H-------hh
Q 013079          208 IPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD-L-------HQ  277 (450)
Q Consensus       208 l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~-~-------~~  277 (450)
                      .     +++ +|+++|+|.+|  +...++..  ..|+++.|.||++|++|  + |+++.++++.+.+.. .       ..
T Consensus       159 ~-----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~K~~gp~G--~-g~l~~~~~~~~~~~~~~~p~~~~~~~  227 (361)
T 3m5u_A          159 N-----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQKNAGISG--L-SCIFIRKDMLERSKNKQIPSMLNYLT  227 (361)
T ss_dssp             S-----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETTTTSSCTT--C-EEEEEEHHHHHHHHTCCCCGGGCHHH
T ss_pred             c-----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEechhccCCCc--c-EEEEEcHHHHhhhcCCCCCceeehHH
Confidence            2     344 49999999998  55556554  36999999999999888  5 888888887766543 0       00


Q ss_pred             --hhhhccCCCchHHHH---HHHHccC--C-cHHHHHHHHHHHHHHHHHHHHhCC-C-eeeCCCCCCCchhHHHHHHhcc
Q 013079          278 --GALMLLGPTMNPKVA---FELSERI--P-HLGLRMKEHCHRALIFARRMKKLG-L-KVLYPGLEDHPHHELLKSMANK  347 (450)
Q Consensus       278 --~~~~~~g~~~~~~~a---~~~~~~~--~-~l~~~~~~~~~~~~~l~~~L~~~~-~-~v~~p~~~~~p~~~l~~~~~~~  347 (450)
                        ......+ +++....   ..+++.+  . .++...++..++++++.+.|++++ . ....+     +.+         
T Consensus       228 ~~~~~~~~~-Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~-----~~~---------  292 (361)
T 3m5u_A          228 HAENQSLFN-TPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHAD-----KKD---------  292 (361)
T ss_dssp             HHHTTTCSS-CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSC-----GGG---------
T ss_pred             HhhcCCCCC-CccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCC-----HHH---------
Confidence              0011122 3322222   1222211  2 366667778889999999999887 3 33211     110         


Q ss_pred             CCCcCcEEEEEeCC---HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC
Q 013079          348 EYGFGGLLCLDMET---EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY  424 (450)
Q Consensus       348 ~~g~g~~~~~~l~~---~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~  424 (450)
                        ...++++|.+++   .+  ..++..|...   | |.+..|..                         ..+.+|+|++ 
T Consensus       293 --rs~~ivsf~~~~~~~~~--~~~~~~L~~~---g-I~~~~g~~-------------------------~~g~iRiS~~-  338 (361)
T 3m5u_A          293 --RSLMNVSFNIAKNKDLE--PLFVKEAEEA---G-MIGLKGHR-------------------------ILGGIRASIY-  338 (361)
T ss_dssp             --BCSSEEEEEESSCTTHH--HHHHHHHHHT---T-EECCBCCT-------------------------TTCSEEEECC-
T ss_pred             --cCCeEEEEECCCchhhh--HHHHHHHHHC---C-CEEecCCC-------------------------ccCeEEEEcc-
Confidence              134589999985   32  3566777642   3 45444411                         0145999999 


Q ss_pred             CCCHHHHHHHHHHHHHHhhhc
Q 013079          425 LGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       425 ~~~~~~~i~~l~~al~~~~~~  445 (450)
                      ..++.++++.|.++|+++.+.
T Consensus       339 ~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          339 NALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHh
Confidence            889999999999999987643

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.91  E-value=5.5e-23  Score=206.75  Aligned_cols=271  Identities=15%  Similarity=0.120  Sum_probs=163.4

Q ss_pred             HHHHHhhcCCC--CCCCCCccccCCCC-hhHHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCC
Q 013079           74 ETMRRMFAGEL--GPDRDFFIYSRHFN-PTVLNLSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAART  149 (450)
Q Consensus        74 ~~~~~~~~~~~--~n~~~~~~y~r~~~-~~~~~l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~  149 (450)
                      +++.+.+...+  ++|.+.|..+.... ...+.+++.+++++|.+.. +++++   |++|+.+++.+++++||+|+++.+
T Consensus        48 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~s---Gs~a~~~a~~~~~~~gd~v~~~~~  124 (420)
T 3gbx_A           48 QAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHS---GSQANFAVYTALLQPGDTVLGMNL  124 (420)
T ss_dssp             HHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEEEE
T ss_pred             HHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecC---cHHHHHHHHHHhcCCCCEEEecch
Confidence            56655554444  55554443333322 3345566899999998775 55788   999999999999999999999999


Q ss_pred             CchhHHHHHHHhCCCccCeeEEEeCC-----CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEE
Q 013079          150 LYGGTHALLTHFFPRACNITTTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV  224 (450)
Q Consensus       150 ~y~~~~~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~liv  224 (450)
                      +|+++............++....++.     .|+++|++++...++++|++++|+||  .+.|+++|.++|+++|+++|+
T Consensus       125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~~~~~~~li~  202 (420)
T 3gbx_A          125 AQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIADSIGAYLFV  202 (420)
T ss_dssp             C------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHHHHTTCEEEE
T ss_pred             hhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHHHHcCCEEEE
Confidence            99874421111000001222222221     38999999994346999999989886  478999999999999999999


Q ss_pred             eCCCC-CCC-----CCccCCCCeEEEeCCCCccccCccceEEEEEcCH---HHHHHHHHHhhhhhhccCCCchH-HHH-H
Q 013079          225 DNTFS-PLV-----LSPARLGADVVVHSISKFISGGADIIAGAVCGPA---NLVNSMMDLHQGALMLLGPTMNP-KVA-F  293 (450)
Q Consensus       225 D~~~~-~~~-----~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~---~~~~~l~~~~~~~~~~~g~~~~~-~~a-~  293 (450)
                      |++|. ++.     ..... .+|+++.|+||+++++.   ||++++++   ++.+.+.......  ..+..... ..+ .
T Consensus       203 De~~~~~~~~~~~~~~~~~-~~di~~~s~sK~~~g~~---gg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~  276 (420)
T 3gbx_A          203 DMAHVAGLIAAGVYPNPVP-HAHVVTTTTHKTLAGPR---GGLILAKGGDEELYKKLNSAVFPS--AQGGPLMHVIAGKA  276 (420)
T ss_dssp             ECTTTHHHHHTTSSCCSTT-TSSEEEEESSGGGCSCS---CEEEEESSCCHHHHHHHHHHHC------CCCCHHHHHHHH
T ss_pred             ECCcchhceecccCCcccc-cCCEEEeecccCCCCCC---ceEEEEcCCcHHHHHHhhhhcCCC--CCCCcchhHHHHHH
Confidence            99972 221     11222 48999999999996332   49998886   6776665443211  12222222 222 2


Q ss_pred             HHHc-cC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHH
Q 013079          294 ELSE-RI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMN  370 (450)
Q Consensus       294 ~~~~-~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~  370 (450)
                      .+.. .. +++....+++.++++++.+.|++.+..+..++                  ..++++++.++. ......+..
T Consensus       277 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  338 (420)
T 3gbx_A          277 VALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGG------------------TENHLFLLDLVDKNLTGKEADA  338 (420)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS------------------CSSSEEEEECGGGTCCHHHHHH
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCC------------------CCCeEEEEEcCCCCCCHHHHHH
Confidence            2222 22 34566677788899999999998776654321                  235688888752 112344555


Q ss_pred             Hhh
Q 013079          371 YLQ  373 (450)
Q Consensus       371 ~l~  373 (450)
                      .|.
T Consensus       339 ~l~  341 (420)
T 3gbx_A          339 ALG  341 (420)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.90  E-value=1e-22  Score=208.30  Aligned_cols=290  Identities=14%  Similarity=0.117  Sum_probs=169.8

Q ss_pred             ccCccccCCH-HHHHHhhcCCC--CCCCCCccccCCCChhHH-HHHHHHHHHhCCCe-----EEEecChHHHHHHHHHHH
Q 013079           64 ASATFTVMEP-ETMRRMFAGEL--GPDRDFFIYSRHFNPTVL-NLSRQMAALEGTEA-----AYCTASDKAGMSAISSVL  134 (450)
Q Consensus        64 ~att~~~~~~-~~~~~~~~~~~--~n~~~~~~y~r~~~~~~~-~l~~~iA~l~g~~~-----~~~tsg~~~gt~ai~~al  134 (450)
                      .|.+++.+.+ ++|...+...|  |+|.+.|.-|......++ .+++++++++|++.     .++++|   ||+||.+++
T Consensus        61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~s---Gt~An~~al  137 (490)
T 2a7v_A           61 ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYS---GSPANLAVY  137 (490)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSS---HHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCc---hHHHHHHHH
Confidence            4666665554 77777777666  677665544433222333 45599999999875     366779   999999999


Q ss_pred             HHhccCCCEEEEeCCCchhHHHHHH--H--hCCCccCe--eEEEeCC------CCHHHHHHhhhcCCceEEEEecCCCCc
Q 013079          135 MQLCSSGGHVVAARTLYGGTHALLT--H--FFPRACNI--TTTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPT  202 (450)
Q Consensus       135 ~~l~~~gd~Vi~~~~~y~~~~~~~~--~--~~~~~~g~--~v~~v~~------~d~~~l~~ai~~~~t~lv~i~~~~Npt  202 (450)
                      .+++++||+|++.++.|.++.....  .  ... ..|.  .+..+++      .|+++|++++...++++|+++.++|| 
T Consensus       138 ~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~-~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~-  215 (490)
T 2a7v_A          138 TALLQPHDRIMGLDLPDGGHLTHGYMSDVKRIS-ATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-  215 (490)
T ss_dssp             HHHCCSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred             HHHcCCCCEecccCccccccccchhhhcchhHH-HcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC-
Confidence            9999999999999999876432110  0  000 1232  2333322      28999999884457899998888886 


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCCCCccccCccceEEEEEcCHH---------
Q 013079          203 LAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSISKFISGGADIIAGAVCGPAN---------  267 (450)
Q Consensus       203 G~v~~l~~I~~la~~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~---------  267 (450)
                       .+.|+++|.++|+++|+++|+|+++ .++     ...+.. ++|+++.|+||.++++  + ||+++++++         
T Consensus       216 -~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~aDiv~~S~hK~l~Gp--~-GG~i~~~~~~~~~~~~~~  290 (490)
T 2a7v_A          216 -RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-HADIVTTTTHKTLRGA--R-SGLIFYRKGVKAVDPKTG  290 (490)
T ss_dssp             -SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCSC--S-CEEEEEECSEEEEETTTE
T ss_pred             -CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-CCCEEEECCcccCccc--c-chheeeccchhccccccc
Confidence             4689999999999999999999996 221     123333 6899999999998654  2 588877653         


Q ss_pred             ------HHHHHHHHhhhhhhccCCCchHHHHHH-HHc-c-CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchh
Q 013079          268 ------LVNSMMDLHQGALMLLGPTMNPKVAFE-LSE-R-IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHH  338 (450)
Q Consensus       268 ------~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~-~-~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~  338 (450)
                            +.+.++...... ...++.+...++.. ++. . .+.+.++.++..+++++|.+.|++.++++..++.      
T Consensus       291 ~~~~~~l~~~i~~~~~~g-~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t------  363 (490)
T 2a7v_A          291 REIPYTFEDRINFAVFPS-LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT------  363 (490)
T ss_dssp             EEEECCCHHHHHHHHTTT-TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC------
T ss_pred             chhhHHHHHHHHHHhccc-CCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCC------
Confidence                  455555433211 12223333233322 211 1 1244567777889999999999998877643221      


Q ss_pred             HHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccc
Q 013079          339 ELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       339 ~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                                  ...++++.+... .....+...|...   | |.++.+
T Consensus       364 ------------~t~lv~vdl~~~g~~~~~~~~~L~~~---G-I~v~~~  396 (490)
T 2a7v_A          364 ------------DNHLVLVDLRPKGLDGARAERVLELV---S-ITANKN  396 (490)
T ss_dssp             ------------SSSEEEEECTTTTCCHHHHHHHHHHT---T-EECEEE
T ss_pred             ------------CCeEEEEEeCCCCCCHHHHHHHHHhC---C-eEEecC
Confidence                        123888888621 1234455555532   2 555543

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.90  E-value=1.2e-22  Score=203.48  Aligned_cols=289  Identities=9%  Similarity=0.031  Sum_probs=183.2

Q ss_pred             hhHHHHHHHHHHHhCCC---eEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           99 PTVLNLSRQMAALEGTE---AAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~---~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      +..+++++.+|+++|.+   .+++ |+|   |++|+++++.+++++| .++++...|............  .|.++.+++
T Consensus        78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g---~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~--~g~~~~~v~  151 (398)
T 2fyf_A           78 NLVGRVRSGLAELFSLPDGYEVILGNGG---ATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNP--FVGEPIIIT  151 (398)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEEEETC---HHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCT--TSCCCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEeCCc---hhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhC--CCCceEEEe
Confidence            45789999999999974   5788 999   9999999999998876 334455555322211112211  256666666


Q ss_pred             CCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccCC-CCeEEEeCCCCcccc
Q 013079          175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPARL-GADVVVHSISKFISG  253 (450)
Q Consensus       175 ~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~~-g~di~~~S~sK~~g~  253 (450)
                      .++-......+ +++|++|++++++||||.+.|+++|.++   +|+++|+|++|...... ..+ ++|+++.|+||++++
T Consensus       152 ~~~g~~~~~~i-~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~-~~~~~~di~~~s~sK~~~~  226 (398)
T 2fyf_A          152 SDPGSAPEPQT-DPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP-VDIAETDAYYFAPQKNFAS  226 (398)
T ss_dssp             CCTTCCCCCCC-CTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC-CCGGGCSEEEECTTSTTCS
T ss_pred             cCCCCCCCccc-cCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc-cCcccCcEEEEecCcccCC
Confidence            53100001125 6789999999999999999999988887   89999999998433221 122 479999999999998


Q ss_pred             CccceEEEEEcCHHHHHHHHHHhh----------hh--------hhccCCC-chHH-HHHHHHccCC-c--HHHHHHHHH
Q 013079          254 GADIIAGAVCGPANLVNSMMDLHQ----------GA--------LMLLGPT-MNPK-VAFELSERIP-H--LGLRMKEHC  310 (450)
Q Consensus       254 ~g~~igG~l~~~~~~~~~l~~~~~----------~~--------~~~~g~~-~~~~-~a~~~~~~~~-~--l~~~~~~~~  310 (450)
                      +|. + |+++.++++++.+...+.          ..        ....++. .... ++..++..+. .  +....+++.
T Consensus       227 ~gg-~-g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~  304 (398)
T 2fyf_A          227 DGG-L-WLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTA  304 (398)
T ss_dssp             CSS-E-EEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             CCc-e-EEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            853 6 899999988877743210          00        0111211 1111 2222222211 1  556667788


Q ss_pred             HHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccc
Q 013079          311 HRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       311 ~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      ++++++.+.|++++ .++..+.    |.         .  ..+.+++|.++.......+.+.|...   | +.++.|.  
T Consensus       305 ~~~~~l~~~L~~~~g~~~~~~~----~~---------~--~~~~~~~~~~~~~~~~~~l~~~L~~~---g-I~v~~g~--  363 (398)
T 2fyf_A          305 DSSQRLYSWAQERPYTTPFVTD----PG---------L--RSQVVGTIDFVDDVDAGTVAKILRAN---G-IVDTEPY--  363 (398)
T ss_dssp             HHHHHHHHHHHHSTTEEESCCS----GG---------G--BCSSEEEEEECTTSCHHHHHHHHHHT---T-CBCCSCC--
T ss_pred             HHHHHHHHHHHHcCCceeccCC----hh---------h--cCCcEEEEECCCCCCHHHHHHHHHHC---C-cEEecCc--
Confidence            89999999999874 4443211    11         0  12348999996322245677777642   3 4444330  


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                                 .          ...++.||||++ ..++++.++.+.++|.++.
T Consensus       364 -----------~----------~~~~~~iRis~~-~~~t~e~i~~~~~~l~~~l  395 (398)
T 2fyf_A          364 -----------R----------KLGRNQLRVAMF-PAVEPDDVSALTECVDWVV  395 (398)
T ss_dssp             -----------T----------TTCSSEEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred             -----------c----------cCCCCEEEEEec-CCCCHHHHHHHHHHHHHHH
Confidence                       0          012478999999 8777888888888877653

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.90  E-value=6.6e-22  Score=201.58  Aligned_cols=218  Identities=16%  Similarity=0.097  Sum_probs=155.0

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCc-hhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLY-GGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y-~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ..+...++++.||++++.+.+++|+|   |++|+++++++++++||  +++.++| +.+...+.     ..|.++.+++.
T Consensus        73 ~~~~~~~l~~~la~~~~~~~~~~~~~---gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~-----~~G~~~~~v~~  142 (456)
T 2ez2_A           73 GSENFYHLERTVQELFGFKHIVPTHQ---GRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQE-----KNGAVFVDIVR  142 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESS---HHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHH-----HTTCEEEECBC
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCC---cHHHHHHHHHHhCCCCC--EeccccccchhHHHHH-----HcCCEEEEecc
Confidence            46778999999999999999999999   99999999999999999  7778899 66566554     25777777654


Q ss_pred             C---------------CHHHHHHhhhcCCc----eEEEEecCCC-CcccccC---HHHHHHHHHhcCCEEEEeCCCCC--
Q 013079          176 S---------------DHEMVNSAIVQGRT----KVLYFESISN-PTLAVAN---IPELSRLAHDKGVTVVVDNTFSP--  230 (450)
Q Consensus       176 ~---------------d~~~l~~ai~~~~t----~lv~i~~~~N-ptG~v~~---l~~I~~la~~~gi~livD~~~~~--  230 (450)
                      +               |+++|++++ ++++    ++|++++|+| |||.+.+   +++|+++|+++|+++|+|++|+.  
T Consensus       143 ~~~~~~~~~~~~~~~~d~~~l~~~i-~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~  221 (456)
T 2ez2_A          143 DEAHDAGLNIAFKGDIDLKKLQKLI-DEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVEN  221 (456)
T ss_dssp             GGGGCTTCCCSCTTCBCHHHHHHHH-HHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHH
T ss_pred             cccccccccccccCCCCHHHHHHHH-HhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccc
Confidence            2               789999998 5555    8999999999 9999887   99999999999999999999832  


Q ss_pred             --------CCCCcc---------CCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhh---hccCCCchH
Q 013079          231 --------LVLSPA---------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL---MLLGPTMNP  289 (450)
Q Consensus       231 --------~~~~~~---------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~---~~~g~~~~~  289 (450)
                              +.+...         ....|+++.|++|+++ .| + ||+++. ++++++.+...+....   ...+.....
T Consensus       222 ~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~-~-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (456)
T 2ez2_A          222 AYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN-I-GGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRD  298 (456)
T ss_dssp             HHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS-S-CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHH
T ss_pred             cccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC-c-eeEEEECCHHHHHHHHHHHhhccCcccccCcchhH
Confidence                    322211         1236888888999876 44 4 499987 6788887765443110   011212112


Q ss_pred             HHH--HHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079          290 KVA--FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP  330 (450)
Q Consensus       290 ~~a--~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p  330 (450)
                      ..+  ......++  ....++..++.+++.+.|++.+..+..|
T Consensus       299 ~~a~a~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~~p  339 (456)
T 2ez2_A          299 MEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLKAAGVPIVEP  339 (456)
T ss_dssp             HHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTTCCBCSS
T ss_pred             HHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence            222  12222221  3444555666778888888765544333

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.90  E-value=1.7e-22  Score=202.40  Aligned_cols=287  Identities=16%  Similarity=0.158  Sum_probs=186.6

Q ss_pred             HHHHHHHHhCCCeE-EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccC--eeEEEeCC-----
Q 013079          104 LSRQMAALEGTEAA-YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN--ITTTFVDI-----  175 (450)
Q Consensus       104 l~~~iA~l~g~~~~-~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g--~~v~~v~~-----  175 (450)
                      +++.+++++|.+.. +++++   |++|+.+++.+++++||+|+++.+.|+++...+.. . ...|  .++..++.     
T Consensus        74 ~r~~la~~~g~~~~~i~~~s---Gt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~  148 (405)
T 2vi8_A           74 ARERAKQLFGAEHANVQPHS---GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSP-V-NFSGVQYNFVAYGVDPETH  148 (405)
T ss_dssp             HHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCT-T-SHHHHHSEEEEECBCTTTC
T ss_pred             HHHHHHHHhCCCceEEEecC---cHHHHHHHHHHhcCCCCEEEEecccccchhcccch-h-hhccceeEEEecccccccC
Confidence            45799999998876 45789   99999999999999999999999999876431100 0 0122  25555543     


Q ss_pred             -CCHHHHHHhhhcC-CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-C---CCCccCC-CCeEEEeCCC
Q 013079          176 -SDHEMVNSAIVQG-RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-L---VLSPARL-GADVVVHSIS  248 (450)
Q Consensus       176 -~d~~~l~~ai~~~-~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~---~~~~~~~-g~di~~~S~s  248 (450)
                       .|+++|++++ ++ ++++|+++ ++|. |...++++|.++|+++|+++|+|++|+. .   ...+..+ ..|+++.|+|
T Consensus       149 ~~d~~~l~~~i-~~~~~~~v~~~-~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~s  225 (405)
T 2vi8_A          149 VIDYDDVREKA-RLHRPKLIVAA-AAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTH  225 (405)
T ss_dssp             SBCHHHHHHHH-HHHCCSEEEEC-CSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESS
T ss_pred             CcCHHHHHHHH-HhcCCeEEEEe-CCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEecc
Confidence             2899999999 54 78988884 3443 5677899999999999999999999841 1   1111111 5789999999


Q ss_pred             CccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH-HHHcc--CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          249 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF-ELSER--IPHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       249 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~-~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      |+++++.   ||++++++++++.+....... ...+..+.+.++. .++..  ...+....+++.++++++.+.|++++.
T Consensus       226 K~~~g~~---gG~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~  301 (405)
T 2vi8_A          226 KTLRGPR---GGMILCQEQFAKQIDKAIFPG-IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF  301 (405)
T ss_dssp             STTCCCS---CEEEEECHHHHHHHHHHHTTT-TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCC---CeEEEEcHHHHHHHHhhhccc-ccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9998332   399999988888876654322 1222233333332 22222  234566677788999999999998866


Q ss_pred             eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhhccccccccccccccccccccccccccCCCCC
Q 013079          326 KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELN  404 (450)
Q Consensus       326 ~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~  404 (450)
                      .+..|.                  +.+.++++.++.. .....+.+.|..   .| +.+..|+.+      .... .   
T Consensus       302 ~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~---~g-i~v~~g~~~------~~~~-~---  349 (405)
T 2vi8_A          302 TLVSGG------------------TDNHLLLVDLRPQQLTGKTAEKVLDE---VG-ITVNKNTIP------YDPE-S---  349 (405)
T ss_dssp             EEGGGS------------------CSSSEEEEECGGGTCCHHHHHHHHHH---HT-EECEEECCT------TCSS-C---
T ss_pred             eEecCC------------------CCceEEEEEccCCCCCHHHHHHHHHH---cC-ceeccCcCc------cccC-C---
Confidence            654432                  2456889998621 124456666654   23 566655421      0000 0   


Q ss_pred             HHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHHh
Q 013079          405 AEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSRM  442 (450)
Q Consensus       405 ~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~~  442 (450)
                             ...++.+|||++ .    ..+++.++.+.++|.++
T Consensus       350 -------~~~~~~iRis~~-~~~~~~~~~~~i~~~~~~l~~~  383 (405)
T 2vi8_A          350 -------PFVTSGIRIGTA-AVTTRGFGLEEMDEIAAIIGLV  383 (405)
T ss_dssp             -------TTTCSEEEEECH-HHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -------CCCCCceEEeee-eeeecCCCHHHHHHHHHHHHHH
Confidence                   011467999999 5    23355556665555554

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.90  E-value=6.2e-22  Score=200.30  Aligned_cols=174  Identities=12%  Similarity=0.127  Sum_probs=123.6

Q ss_pred             CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc--------cCCCEEEEeCCCchhHHHHHHHhCCC
Q 013079           95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC--------SSGGHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      ++..+..++++++++++++  .+.++||+|   |++|+..+++.++        ..+++|++..+.|+++..........
T Consensus        68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---g~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~  144 (430)
T 3i4j_A           68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSG---GSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGM  144 (430)
T ss_dssp             TCEEHHHHHHHHHHHHHTTCTTCEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC--------------
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCc---HHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCc
Confidence            4567788999999999985  478999999   9999999998876        34689999999999876433211000


Q ss_pred             c--------cCe--eEEEeCCC--------CHHHHHHhhhc---CCceEEEEecCCC-CcccccC----HHHHHHHHHhc
Q 013079          165 A--------CNI--TTTFVDIS--------DHEMVNSAIVQ---GRTKVLYFESISN-PTLAVAN----IPELSRLAHDK  218 (450)
Q Consensus       165 ~--------~g~--~v~~v~~~--------d~~~l~~ai~~---~~t~lv~i~~~~N-ptG~v~~----l~~I~~la~~~  218 (450)
                      .        ...  .+.+++.+        |+++|++++..   +++++|++++++| ++|.+.+    +++|.++|+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~  224 (430)
T 3i4j_A          145 GARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA  224 (430)
T ss_dssp             -----------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH
T ss_pred             cccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc
Confidence            0        000  23334443        34888888832   5678888888898 9999876    99999999999


Q ss_pred             CCEEEEeCCCCCCCCC-----cc---CCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHH
Q 013079          219 GVTVVVDNTFSPLVLS-----PA---RLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDL  275 (450)
Q Consensus       219 gi~livD~~~~~~~~~-----~~---~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~  275 (450)
                      |+++|+||+|.++...     ..   ....|+++  +||.+++ | +|+ |++++++++++.+...
T Consensus       225 ~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~-G~~r~-G~~~~~~~i~~~~~~~  286 (430)
T 3i4j_A          225 GIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLAA-GYAPL-AGLLAAPQVYETVMGG  286 (430)
T ss_dssp             TCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGTT-TSSCC-EEEEECHHHHHHHHHT
T ss_pred             CCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--EcccccC-Ccccc-EEEEECHHHHHHHhcc
Confidence            9999999999655321     11   22356664  7899995 8 998 8999999999888753

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.90  E-value=6.1e-22  Score=202.42  Aligned_cols=298  Identities=14%  Similarity=0.105  Sum_probs=188.7

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc----CCCE---EEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS----SGGH---VVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~----~gd~---Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      .+...+++++||++++.+.++||+|   |++|+++++++++.    +||+   |+++.+.|..+...+.     ..|.++
T Consensus        75 ~~~~~~l~~~la~~~~~~~v~~t~g---gt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~-----~~g~~~  146 (467)
T 1ax4_A           75 SRNYYDLKDKAKELFNYDYIIPAHQ---GRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-----LNGCKA  146 (467)
T ss_dssp             CHHHHHHHHHHHHHHCCCEEEEESS---HHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-----HTTCEE
T ss_pred             CccHHHHHHHHHHHcCCCcEEEcCC---cHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh-----ccCCce
Confidence            4678899999999999999999999   99999999999888    9998   9988655566565554     245555


Q ss_pred             EEeC---------------CCCHHHHHHhhhc---CCceEEEEecCCCCc-ccccC---HHHHHHHHHhcCCEEEEeCCC
Q 013079          171 TFVD---------------ISDHEMVNSAIVQ---GRTKVLYFESISNPT-LAVAN---IPELSRLAHDKGVTVVVDNTF  228 (450)
Q Consensus       171 ~~v~---------------~~d~~~l~~ai~~---~~t~lv~i~~~~Npt-G~v~~---l~~I~~la~~~gi~livD~~~  228 (450)
                      ..++               ..|+++|++++..   +++++|++++++||+ |.+.+   +++|+++|++||+++|+|+++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~  226 (467)
T 1ax4_A          147 INIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSAR  226 (467)
T ss_dssp             EECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred             ecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchh
Confidence            5432               1289999999932   379999999999999 77754   679999999999999999986


Q ss_pred             CC------------C-CCCccCC------CCeEEEeCCCCccccCccceEEEEEcC-H-HHHHHHHHHhhhh--hhccCC
Q 013079          229 SP------------L-VLSPARL------GADVVVHSISKFISGGADIIAGAVCGP-A-NLVNSMMDLHQGA--LMLLGP  285 (450)
Q Consensus       229 ~~------------~-~~~~~~~------g~di~~~S~sK~~g~~g~~igG~l~~~-~-~~~~~l~~~~~~~--~~~~g~  285 (450)
                      ..            . ..++.++      .+|+++.|+||.++++   +||+++.+ + ++++.+.......  ....+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~  303 (467)
T 1ax4_A          227 FCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGG  303 (467)
T ss_dssp             HHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTT
T ss_pred             hhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCC
Confidence            21            1 1222221      3688999999999875   45888776 6 7887776543311  111122


Q ss_pred             CchH-HHHHH-HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE-----
Q 013079          286 TMNP-KVAFE-LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD-----  358 (450)
Q Consensus       286 ~~~~-~~a~~-~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~-----  358 (450)
                      .... ..+.. .+..... .+++++..++++++.+.|++.+..+..|.                   .|.++++.     
T Consensus       304 ~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-------------------~~~~~~~~~~~~~  363 (467)
T 1ax4_A          304 LAGRDMAAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLREAGIPIQYPT-------------------GGHAVFVDCKKLV  363 (467)
T ss_dssp             CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTTCCBCSSC-------------------CSSEEEEESTTTC
T ss_pred             ccchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhCCCCcccCC-------------------CceEEEEehhhhc
Confidence            2211 11111 2222211 23444455677889999987544443332                   35578887     


Q ss_pred             --eCC-HHHHHHHHHHh-hcccccccccccc-ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHH
Q 013079          359 --MET-EEKANRLMNYL-QNYAQFGFMAVSL-GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG-TLDQRW  432 (450)
Q Consensus       359 --l~~-~~~~~~~~~~l-~~~~~~g~i~vs~-G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i  432 (450)
                        ++. ......+...| ...   | +.++. |+.+.- ..+...    .      ......+.||||++ .. .+++.+
T Consensus       364 ~~~~~~~~~~~~l~~~L~~~~---g-v~v~~~g~~~~~-~~~~~g----~------~~~~~~~~iRls~~-~~~~t~e~i  427 (467)
T 1ax4_A          364 PQIPGDQFPAQAVINALYLES---G-VRAVEIGSFLLG-RDPATG----E------QKHADMEFMRLTIA-RRVYTNDHM  427 (467)
T ss_dssp             TTSCGGGCHHHHHHHHHHHHH---C-EECEEESHHHHC-BCTTTC----S------BCCCSCCEEEEECC-TTSSCHHHH
T ss_pred             cccccCCCCHHHHHHHHHHhc---C-ceeeecCccccc-cccccc----c------ccccccceEEEecc-cccCCHHHH
Confidence              432 11356677777 542   3 55555 432110 000000    0      00011378999999 54 555666


Q ss_pred             HHHHHHHHHh
Q 013079          433 SQFEKALSRM  442 (450)
Q Consensus       433 ~~l~~al~~~  442 (450)
                      +.+.++|.++
T Consensus       428 ~~~~~~l~~~  437 (467)
T 1ax4_A          428 DYIADALIGL  437 (467)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            6666665543

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.90  E-value=1.1e-22  Score=205.94  Aligned_cols=204  Identities=11%  Similarity=0.105  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHHHHHh--------ccCCCEEEEeCCCchhHHHHHHHhCCC
Q 013079          101 VLNLSRQMAALEG--------TEAAYCTASDKAGMSAISSVLMQL--------CSSGGHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus       101 ~~~l~~~iA~l~g--------~~~~~~tsg~~~gt~ai~~al~~l--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      ..+||+.||++++        .+++++|+|   +++++++++.++        +++||+|+++.|.|+++...+..    
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G---~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~----  174 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVG---VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKY----  174 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESH---HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCC---HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHH----
Confidence            5788899998875        367999999   999999999999        89999999999999999888753    


Q ss_pred             ccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCccC--CCCeE
Q 013079          165 ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSPAR--LGADV  242 (450)
Q Consensus       165 ~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~~~--~g~di  242 (450)
                       .|.++.... .|+++|++++ ++++++|++++||||||.+.+ + +   ++  ++..+.|+++..-..+...  .+.++
T Consensus       175 -~g~~~~~~~-~d~~~l~~~~-~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s~~~~~~~~~i  244 (427)
T 2hox_A          175 -FDKKGYVWA-GNAANYVNVS-NPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYTPIKYKADEDI  244 (427)
T ss_dssp             -SCBTTEEEE-EEGGGGTTCS-CGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTSCCCSCBCCSE
T ss_pred             -cCCeeeeec-CCHHHHHHhh-cCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCCccccCCCceE
Confidence             344433322 2677888888 678999999999999999999 3 2   33  5678899886211112222  46899


Q ss_pred             EEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc------------CCcHHHHHHHH
Q 013079          243 VVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------------IPHLGLRMKEH  309 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~------------~~~l~~~~~~~  309 (450)
                      +++|+||.+|++|+|+ ||++. ++++++.+...+... ....+.+.+.++..++..            .+++....+++
T Consensus       245 ~~~S~SK~~g~~G~Ri-G~~~~~~~~l~~~l~~~~~~~-~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~  322 (427)
T 2hox_A          245 LLFTMSKFTGHSGSRF-GWALIKDESVYNNLLNYMTKN-TEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKL  322 (427)
T ss_dssp             EEEEHHHHTSCGGGCC-EEEEECCHHHHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHH
T ss_pred             EEEeChhcCCCCCceE-EEEEECCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHH
Confidence            9999999999999998 99988 588998887765521 122333444444333332            12344555677


Q ss_pred             HHHHHHHHHHHHhC
Q 013079          310 CHRALIFARRMKKL  323 (450)
Q Consensus       310 ~~~~~~l~~~L~~~  323 (450)
                      .++++++.+.|+++
T Consensus       323 ~~~~~~l~~~L~~~  336 (427)
T 2hox_A          323 RERWVNITALLDQS  336 (427)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhC
Confidence            88899999999887

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.89  E-value=5.3e-22  Score=202.00  Aligned_cols=291  Identities=10%  Similarity=0.117  Sum_probs=184.9

Q ss_pred             CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHH-HHHHh--
Q 013079           95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHA-LLTHF--  161 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~-~~~~~--  161 (450)
                      .+..+...++++.|+++++  .+.++||+|   |++|++++++.+..        +||+|++.++.|++... .+...  
T Consensus        89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~g---gsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~  165 (449)
T 3a8u_X           89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDS---GSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGV  165 (449)
T ss_dssp             SCCCHHHHHHHHHHHTTSSTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEcCc---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCC
Confidence            4567788999999999984  467899999   99999999987753        67899999999987643 22210  


Q ss_pred             -------CCCccCeeEEEeCC--------CC--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHH
Q 013079          162 -------FPRACNITTTFVDI--------SD--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPEL  211 (450)
Q Consensus       162 -------~~~~~g~~v~~v~~--------~d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I  211 (450)
                             .+...++....++.        .|        +++|++++.+   +++++|++++.+|+||.+.+    +++|
T Consensus       166 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l  245 (449)
T 3a8u_X          166 NGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRN  245 (449)
T ss_dssp             HHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred             hhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHH
Confidence                   00011333333221        14        8999998832   56788888888889999888    9999


Q ss_pred             HHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHh-------
Q 013079          212 SRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH-------  276 (450)
Q Consensus       212 ~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~-------  276 (450)
                      .++|+++|+++|+|++|+.+....       .....|++  |+||.+++ | +|+ |+++.++++++.+....       
T Consensus       246 ~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~-G~~~~~~~~~~~l~~~~~~~~~~~  321 (449)
T 3a8u_X          246 REICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPM-GAVIASTEIYQTFMNQPTPEYAVE  321 (449)
T ss_dssp             HHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCC-EEEEEEHHHHHHHHTCSSCTTSCS
T ss_pred             HHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCce-EEEEECHHHHHHhhccCccccccc
Confidence            999999999999999996554211       11235766  67899995 6 888 88888888888776421       


Q ss_pred             -hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          277 -QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       277 -~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                       ....+..++.+.+.++..++..++. ....++..++++++.+.|++++.   .|...             ...+.|.++
T Consensus       322 ~~~~~t~~~~~~~~aa~~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~~~-------------~~~~~g~~~  384 (449)
T 3a8u_X          322 FPHGYTYSAHPVACAAGLAALCLLQK-ENLVQSVAEVAPHFEKALHGIKG---AKNVI-------------DIRNFGLAG  384 (449)
T ss_dssp             SCCCCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHTTTT---STTEE-------------EEEEETTEE
T ss_pred             ccccCCCcccHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHhc---CCCeE-------------EEeeeEEEE
Confidence             0011122222222222222221111 12455667778888888876431   01100             001357799


Q ss_pred             EEEeCCHH-----HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHH
Q 013079          356 CLDMETEE-----KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ  430 (450)
Q Consensus       356 ~~~l~~~~-----~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~  430 (450)
                      ++.++...     ....+.+.|...   | +.+..|                            .+.||||++ ...+++
T Consensus       385 ~i~~~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~----------------------------g~~iRis~~-~~~t~~  431 (449)
T 3a8u_X          385 AIQIAPRDGDAIVRPFEAGMALWKA---G-FYVRFG----------------------------GDTLQFGPT-FNSKPQ  431 (449)
T ss_dssp             EEEECCBTTBSSHHHHHHHHHHHHH---T-EECEEE----------------------------TTEEEECCC-TTCCHH
T ss_pred             EEEEecCcccccccHHHHHHHHHHC---C-cEEecC----------------------------CCEEEEECC-CcCCHH
Confidence            99997321     122466666532   2 333321                            167999987 656666


Q ss_pred             HHHHHHHHHHHh
Q 013079          431 RWSQFEKALSRM  442 (450)
Q Consensus       431 ~i~~l~~al~~~  442 (450)
                      .++.+.++|.++
T Consensus       432 ~i~~~l~~l~~~  443 (449)
T 3a8u_X          432 DLDRLFDAVGEV  443 (449)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666665544

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.89  E-value=1.7e-22  Score=205.64  Aligned_cols=211  Identities=21%  Similarity=0.217  Sum_probs=149.8

Q ss_pred             HHHH-HHHHHHhCCCeEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----
Q 013079          102 LNLS-RQMAALEGTEAAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----  175 (450)
Q Consensus       102 ~~l~-~~iA~l~g~~~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----  175 (450)
                      +++. +++++++|.+.+.+ ++|   |++|+..++.+++++||+|++.+++|+++..........-.+..+.+++.    
T Consensus        93 e~~a~~~la~~~g~~~~~v~~~s---Gs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  169 (447)
T 3h7f_A           93 ENLARDRAKALFGAEFANVQPHS---GAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPAT  169 (447)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTT
T ss_pred             HHHHHHHHHHHcCCCceEEEeCC---HHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCccc
Confidence            4455 99999999988766 899   99999999999999999999999998773211000000001234444442    


Q ss_pred             --CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCC-----CCCccCCCCeEEEeCC
Q 013079          176 --SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPL-----VLSPARLGADVVVHSI  247 (450)
Q Consensus       176 --~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~-----~~~~~~~g~di~~~S~  247 (450)
                        .|+++|++++...++++|++++++||++.  ++++|.++|+++|+++|+|++| .++     ..++. .++|+++.|+
T Consensus       170 ~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~  246 (447)
T 3h7f_A          170 HLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTV  246 (447)
T ss_dssp             CSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEES
T ss_pred             CCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecC
Confidence              38999999884457899999999998876  9999999999999999999997 322     12222 2579999999


Q ss_pred             CCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH--HHHHHHHcc-CC-cHHHHHHHHHHHHHHHHHHHHhC
Q 013079          248 SKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP--KVAFELSER-IP-HLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       248 sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~--~~a~~~~~~-~~-~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      ||++++  .+. |++++++++++.+.......  ..++....  .++..++.. .+ ++..+.++..++++++.+.|++.
T Consensus       247 sK~l~G--~~g-G~i~~~~~~~~~l~~~~~~~--~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (447)
T 3h7f_A          247 HKTLGG--GRS-GLIVGKQQYAKAINSAVFPG--QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP  321 (447)
T ss_dssp             SGGGCC--CSC-EEEEECGGGHHHHHHHHTTT--TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             CcCCCC--CCe-EEEEECHHHHHHHhhhcCCc--ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999873  454 99999988888876654322  22333222  222222222 23 45667778889999999999876

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.89  E-value=1.2e-22  Score=207.35  Aligned_cols=259  Identities=10%  Similarity=0.120  Sum_probs=169.5

Q ss_pred             ccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc-------CC-CEEEEeCCCchhHHHHHHHhC
Q 013079           93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS-------SG-GHVVAARTLYGGTHALLTHFF  162 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~-------~g-d~Vi~~~~~y~~~~~~~~~~~  162 (450)
                      ++++.++...+++++|+++++  .+.++||+|   |++|++.+++.+..       +| +.||+.++.|++.........
T Consensus       112 ~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~s---GseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~  188 (457)
T 3tfu_A          112 FGGLTHEPAARLAKLLVDITPAGLDTVFFSDS---GSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSIC  188 (457)
T ss_dssp             SSSEECHHHHHHHHHHHHHSSTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTS
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCc---HHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhccc
Confidence            355677889999999999995  467999999   99999999987764       55 489999999987543332110


Q ss_pred             C-C--------ccCeeEEEeCC-------CCHHHHHHhhhc--CCceEEEEec-CCCCcccccC----HHHHHHHHHhcC
Q 013079          163 P-R--------ACNITTTFVDI-------SDHEMVNSAIVQ--GRTKVLYFES-ISNPTLAVAN----IPELSRLAHDKG  219 (450)
Q Consensus       163 ~-~--------~~g~~v~~v~~-------~d~~~l~~ai~~--~~t~lv~i~~-~~NptG~v~~----l~~I~~la~~~g  219 (450)
                      . .        .....+.+++.       .|+++|++++.+  +++++|++++ ++|++|.+.+    +++|.++|+++|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~g  268 (457)
T 3tfu_A          189 DPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYE  268 (457)
T ss_dssp             CCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHT
T ss_pred             CCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcC
Confidence            0 0        01112333333       278899998831  6789999999 9999999876    999999999999


Q ss_pred             CEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh----hhhhccCCCch
Q 013079          220 VTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ----GALMLLGPTMN  288 (450)
Q Consensus       220 i~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~----~~~~~~g~~~~  288 (450)
                      +++|+||+|+++....       .....|++  |++|.+++..+|+ |++++++++++.+.....    ...+..++.+.
T Consensus       269 illI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~l-G~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a  345 (457)
T 3tfu_A          269 VLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSL-AATLCTADVAHTISAGAAGALMHGPTFMANPLA  345 (457)
T ss_dssp             CEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCC-EEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHH
T ss_pred             CEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcce-EEEEEcHHHHHHhhccCCCceeEecCCCcCHHH
Confidence            9999999996654221       12246777  6899998643688 999999999888753211    11122333333


Q ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHH
Q 013079          289 PKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRL  368 (450)
Q Consensus       289 ~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~  368 (450)
                      +.++..++..++. ....++..++.+++.+.|+++..   .|.+.             ...+.|.+++|+++.......+
T Consensus       346 ~aaa~aaL~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~-------------~vr~~G~~~~i~l~~~~~~~~~  408 (457)
T 3tfu_A          346 CAVSVASVELLLG-QDWRTRITELAAGLTAGLDTARA---LPAVT-------------DVRVCGAIGVIECDRPVDLAVA  408 (457)
T ss_dssp             HHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHGGGGG---STTEE-------------EEEECSSCEEEEESSCCCHHHH
T ss_pred             HHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHhc---CCCee-------------eeecCCeEEEEEECCcccHHHH
Confidence            3333333322111 12344556667778888876421   12111             1114677999999743224566


Q ss_pred             HHHhhc
Q 013079          369 MNYLQN  374 (450)
Q Consensus       369 ~~~l~~  374 (450)
                      .+.|..
T Consensus       409 ~~~l~~  414 (457)
T 3tfu_A          409 TPAALD  414 (457)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.89  E-value=1.4e-21  Score=199.67  Aligned_cols=176  Identities=12%  Similarity=0.127  Sum_probs=129.9

Q ss_pred             ccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHHhC
Q 013079           93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFF  162 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~  162 (450)
                      +..+..+...+++++|+++.+  .+.++||+|   |++|+..+++.+..        .++.|++..+.|++.........
T Consensus        89 ~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~g---GseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~  165 (460)
T 3gju_A           89 YVGHGTEASITLAKMIIDRAPKGMSRVYFGLS---GSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLT  165 (460)
T ss_dssp             CTTCCCHHHHHHHHHHHHHSCTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHC
T ss_pred             ccccCCHHHHHHHHHHHhhCCCCcCEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhcc
Confidence            345567888999999999874  467999999   99999999988763        46899999999988654432110


Q ss_pred             CC--------ccCeeEEEeCC------CC------------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HH
Q 013079          163 PR--------ACNITTTFVDI------SD------------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IP  209 (450)
Q Consensus       163 ~~--------~~g~~v~~v~~------~d------------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~  209 (450)
                      ..        .....+..++.      +|            +++|++++.+   +++++|++++++|++|.+.+    ++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~  245 (460)
T 3gju_A          166 GLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWE  245 (460)
T ss_dssp             CCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHH
T ss_pred             CCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHH
Confidence            00        01112334442      12            6889888832   57889999999999998765    99


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          210 ELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                      +|.++|++||+++|+||+|+++....       .....|+++  ++|.+++.++|+ |++++++++++.+..
T Consensus       246 ~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG~~~l-g~v~~~~~i~~~~~~  314 (460)
T 3gju_A          246 KIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLIT--IAKGLTSAYAPL-SGVIVADRVWQVLVQ  314 (460)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCC-EEEEEEHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--eehhhcCCCCCe-EEEEECHHHHHHHhc
Confidence            99999999999999999996663221       122356665  789998633798 899999999888853

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.89  E-value=4.6e-22  Score=201.41  Aligned_cols=292  Identities=13%  Similarity=0.145  Sum_probs=185.0

Q ss_pred             CCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhC---------
Q 013079           96 HFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFF---------  162 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~---------  162 (450)
                      +..+...++++.|+++++  .+.++||+|   |++|++++++.+.  ..+++|++.+|.|++.........         
T Consensus        82 ~~~~~~~~l~~~la~~~~~~~~~v~~~~g---g~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  158 (433)
T 1zod_A           82 MLSRPVVDLATRLANITPPGLDRALLLST---GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVG  158 (433)
T ss_dssp             CCCHHHHHHHHHHHHHSCTTCCEEEEESC---HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSC
T ss_pred             cCCHHHHHHHHHHHHhCCCCcCEEEEeCc---hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccC
Confidence            446778999999999996  468999999   9999999998653  335799999999987544322110         


Q ss_pred             CCccCeeEEEeCC------C---------CHHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHHHHHHHhcCC
Q 013079          163 PRACNITTTFVDI------S---------DHEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV  220 (450)
Q Consensus       163 ~~~~g~~v~~v~~------~---------d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi  220 (450)
                      +...|+....++.      .         |+++|++++.+   +++++|++++++||||.+.+    +++|.++|++||+
T Consensus       159 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~  238 (433)
T 1zod_A          159 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGM  238 (433)
T ss_dssp             CCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC
Confidence            1112444333321      1         38899998832   57788888877899998766    9999999999999


Q ss_pred             EEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh-hhhccCCCchHHHH
Q 013079          221 TVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-ALMLLGPTMNPKVA  292 (450)
Q Consensus       221 ~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-~~~~~g~~~~~~~a  292 (450)
                      ++|+||+|+++....       .....|++  |++|.+++ |+|+ |++++++++++.+...... ..+..++.+.+.++
T Consensus       239 ~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~~i-g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~  314 (433)
T 1zod_A          239 LLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-GLPL-AAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVG  314 (433)
T ss_dssp             EEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-TSSC-EEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred             EEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccC-CCCe-eEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHH
Confidence            999999997654211       12235654  68899996 8998 9999999988887652110 01122333333333


Q ss_pred             HHHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------
Q 013079          293 FELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------  361 (450)
Q Consensus       293 ~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------  361 (450)
                      ..++..++. ....++..++++++.+.|+++    +.....+                   +.|.++++.++.       
T Consensus       315 ~aal~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~  374 (433)
T 1zod_A          315 LRVLDVVQR-DGLVARANVMGDRLRRGLLDLMERFDCIGDVR-------------------GRGLLLGVEIVKDRRTKEP  374 (433)
T ss_dssp             HHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE-------------------EETTEEEEEEEEETTTTEE
T ss_pred             HHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-------------------EEEEEEEEEEecCccccCC
Confidence            333322111 123455566677777777653    3210111                   356788988762       


Q ss_pred             -HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          362 -EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       362 -~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                       ......+.+.+..   .| +.+..|+.                      .+ .++.||||++ ...+++.++.+.++|.
T Consensus       375 ~~~~~~~~~~~l~~---~G-v~v~~~~~----------------------~~-~~~~lRi~~~-~~~t~~~i~~~l~~l~  426 (433)
T 1zod_A          375 ADGLGAKITRECMN---LG-LSMNIVQL----------------------PG-MGGVFRIAPP-LTVSEDEIDLGLSLLG  426 (433)
T ss_dssp             CTTHHHHHHHHHHH---TT-EECCEECC----------------------TT-SCCEEEECCC-TTCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH---CC-CeEeccCC----------------------CC-CCCEEEEECC-cCCCHHHHHHHHHHHH
Confidence             1235567776654   23 34443321                      01 1478999988 6555666666655555


Q ss_pred             Hh
Q 013079          441 RM  442 (450)
Q Consensus       441 ~~  442 (450)
                      ++
T Consensus       427 ~~  428 (433)
T 1zod_A          427 QA  428 (433)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.89  E-value=2.8e-22  Score=203.06  Aligned_cols=219  Identities=14%  Similarity=0.182  Sum_probs=149.2

Q ss_pred             CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHh---------CC
Q 013079           96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FP  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~---------~~  163 (450)
                      +.++...++++++++++ +.+.++||+|   |++|++++++.+..  ++++||+..+.|+++.......         .+
T Consensus        92 ~~~~~~~~l~~~la~~~~~~~~v~~~~s---Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~  168 (434)
T 3l44_A           92 TPTALEVKFAKMLKEAMPALDKVRFVNS---GTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTP  168 (434)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCSEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCB
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCc---hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCC
Confidence            45778899999999998 5688999999   99999999987654  6789999999998754322100         00


Q ss_pred             CccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          164 RACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       164 ~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~  231 (450)
                      ...++      .+..++.+|+++|++++..  +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|.++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~  248 (434)
T 3l44_A          169 DSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF  248 (434)
T ss_dssp             SSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred             CcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce
Confidence            00111      4556666799999998832  56889999988889999887    999999999999999999999765


Q ss_pred             CCCc------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHH
Q 013079          232 VLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG  303 (450)
Q Consensus       232 ~~~~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~  303 (450)
                      ....      .....|++  |+||.++ +|+|+ |++++++++++.+.....  ...+..++.+.+.++..++..++. +
T Consensus       249 ~~g~~~~~~~~~~~~di~--t~sK~~~-~G~~i-G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~  323 (434)
T 3l44_A          249 RFMYGGAQDLLGVTPDLT--ALGKVIG-GGLPI-GAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-E  323 (434)
T ss_dssp             TSSSSCHHHHHTCCCSEE--EEEGGGG-TTSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-T
T ss_pred             eccccHHHHHcCCCCCee--ehhhhhc-CCcCe-eeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-c
Confidence            2111      12235655  5889998 68998 888999988877653211  111223333333333333332222 2


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 013079          304 LRMKEHCHRALIFARRMKK  322 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~  322 (450)
                      ...++..++++++.+.|++
T Consensus       324 ~~~~~~~~~~~~l~~~L~~  342 (434)
T 3l44_A          324 GLYEKLDELGATLEKGILE  342 (434)
T ss_dssp             THHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            3344455555666666654

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.89  E-value=2.7e-21  Score=197.47  Aligned_cols=200  Identities=15%  Similarity=0.170  Sum_probs=141.3

Q ss_pred             ccccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHH
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTH  160 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~  160 (450)
                      |.+.++.++...+++++|+++++  .+.++||+|   |++|+..+++.+..        .+++||+..+.|+++......
T Consensus        86 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~g---gseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~  162 (459)
T 4a6r_A           86 NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNS---GSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGAS  162 (459)
T ss_dssp             CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHh
Confidence            33445678889999999999984  578999999   99999999998765        468999999999986544322


Q ss_pred             hCCC--------ccCeeEEEeCCC---------C--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----H
Q 013079          161 FFPR--------ACNITTTFVDIS---------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----I  208 (450)
Q Consensus       161 ~~~~--------~~g~~v~~v~~~---------d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l  208 (450)
                      ....        .....+..++..         |        +++|++++..   +++++|++++++|++|.+.+    +
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l  242 (459)
T 4a6r_A          163 LGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYW  242 (459)
T ss_dssp             HSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHH
T ss_pred             hcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHH
Confidence            1110        011133344422         2        7888888832   56788999988888888877    9


Q ss_pred             HHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh--hhh
Q 013079          209 PELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH--QGA  279 (450)
Q Consensus       209 ~~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~--~~~  279 (450)
                      ++|.++|++||+++|+||+|+++....       .....|+++  ++|.++++++|+ |++++++++++.+...+  ...
T Consensus       243 ~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~~~l-g~v~~~~~i~~~~~~~~~~~~~  319 (459)
T 4a6r_A          243 PEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGYLPI-GAVFVGKRVAEGLIAGGDFNHG  319 (459)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHHHHHHHCTTHHH
T ss_pred             HHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCCCCc-cceeeCHHHHHHhhcCCCcccC
Confidence            999999999999999999996653221       122457765  789999766898 89999999988886321  112


Q ss_pred             hhccCCCchHHHHHHHH
Q 013079          280 LMLLGPTMNPKVAFELS  296 (450)
Q Consensus       280 ~~~~g~~~~~~~a~~~~  296 (450)
                      .+..++.+.+.++..++
T Consensus       320 ~t~~~~~~~~aaa~aal  336 (459)
T 4a6r_A          320 FTYSGHPVCAAVAHANV  336 (459)
T ss_dssp             HHHCSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            22445555544444443

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.88  E-value=2.1e-22  Score=204.95  Aligned_cols=158  Identities=18%  Similarity=0.176  Sum_probs=121.9

Q ss_pred             CCChhHHHHHHHHHHHhCCCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           96 HFNPTVLNLSRQMAALEGTEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ......+++++.+|+ +|++. +++|+|   +++|+.+++++++++||+|++++++|+++...+.     ..|.++.+++
T Consensus        54 ~~~~~~~~~~~~la~-~g~~~~v~~~~G---~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~-----~~G~~~~~v~  124 (446)
T 2x3l_A           54 HPEEVILKSMKQVEK-HSDYDGYFLVNG---TTSGILSVIQSFSQKKGDILMARNVHKSVLHALD-----ISQQEGHFIE  124 (446)
T ss_dssp             SCSSHHHHHHHHHCS-CTTEEEEEESSH---HHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHH-----HHTCCEEECE
T ss_pred             CcchHHHHHHHHHHh-cCCCceEEEeCC---HHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHH-----HcCCeEEEEe
Confidence            456678999999999 99864 678888   9999999999999999999999999999988775     2466666665


Q ss_pred             C--C---------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-CC-----CCccC
Q 013079          175 I--S---------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LV-----LSPAR  237 (450)
Q Consensus       175 ~--~---------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~-----~~~~~  237 (450)
                      .  +         |+++|   + .+++++|++++ .|++|.+.|+++|+++|+++|+++|+|++|+. +.     .+...
T Consensus       125 ~~~~~~~~~~~~~d~~~l---~-~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~  199 (446)
T 2x3l_A          125 THQSPLTNHYNKVNLSRL---N-NDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLN  199 (446)
T ss_dssp             EEECTTTSSEEEEEC-----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGG
T ss_pred             CeeccccCcCCCCCHHHH---c-CCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHH
Confidence            4  2         44555   4 67899999999 55699999999999999999999999999853 31     23344


Q ss_pred             CCCeEEEeCCCCccc-cCccceEEEEEcCHHHHH
Q 013079          238 LGADVVVHSISKFIS-GGADIIAGAVCGPANLVN  270 (450)
Q Consensus       238 ~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~  270 (450)
                      .++|+++.|+||+++ +.|  + |+++.++++++
T Consensus       200 ~g~Di~~~S~~K~l~~~~g--~-g~l~~~~~~i~  230 (446)
T 2x3l_A          200 YQADYVVQSFHKTLPALTM--G-SVLYIHKNAPY  230 (446)
T ss_dssp             GTCSEEEECHHHHSSSCTT--C-EEEEEETTCTT
T ss_pred             cCCCEEEECCccccccccc--c-EEEEEcCCcCC
Confidence            578999999999554 444  4 88877665543

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.88  E-value=6.8e-21  Score=194.18  Aligned_cols=255  Identities=15%  Similarity=0.132  Sum_probs=159.5

Q ss_pred             cccCCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCC--
Q 013079           92 IYSRHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR--  164 (450)
Q Consensus        92 ~y~r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~--  164 (450)
                      .+..+..+...+++++|+++++   .+.++||+|   |++|++.+++.+.  ..+++|++..+.|++...........  
T Consensus       100 ~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~s---GseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~  176 (453)
T 4ffc_A          100 CFMVTPYEQYVQVAELLNALTPGDHDKRTALFNS---GAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSM  176 (453)
T ss_dssp             TTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCT
T ss_pred             ccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCc---HHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCc
Confidence            3445677888999999999986   467999999   9999999997654  24579999999999865543222110  


Q ss_pred             -------ccCeeEEEeCCC----C-------------HHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHH
Q 013079          165 -------ACNITTTFVDIS----D-------------HEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAH  216 (450)
Q Consensus       165 -------~~g~~v~~v~~~----d-------------~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~  216 (450)
                             .....+..++..    |             ++.|++++..+++++|++++.+++.|.+.+    +++|.++|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~  256 (453)
T 4ffc_A          177 PYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS  256 (453)
T ss_dssp             TTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH
T ss_pred             ccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH
Confidence                   011134444433    3             356666662234567777766666677765    999999999


Q ss_pred             hcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH
Q 013079          217 DKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP  289 (450)
Q Consensus       217 ~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~  289 (450)
                      +||+++|+||+|.++....       .....|++  +++|.+++ |+|+ |++++++++++.+..... ..+..++.+.+
T Consensus       257 ~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G~~~-G~~~~~~~i~~~~~~~~~-~~t~~~~~~~~  331 (453)
T 4ffc_A          257 ENGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG-GMPL-SAVTGRAELMDAVYAGGL-GGTYGGNPVTC  331 (453)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHH
T ss_pred             HcCCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC-CcCe-EEEEECHHHHhhhcccCc-CCCCCcCHHHH
Confidence            9999999999996653221       11235665  47899997 8998 899889888877654332 22233344444


Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-----
Q 013079          290 KVAFELSERIPHLGLRMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-----  360 (450)
Q Consensus       290 ~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-----  360 (450)
                      .++..++..++. ....++..++.+++.+.|+    +++.....                   .+.|.++++.+.     
T Consensus       332 aaa~aal~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-------------------~~~g~~~~~~~~~~~~~  391 (453)
T 4ffc_A          332 AAAVAALGVMRE-LDLPARARAIEASVTSRLSALAEEVDIIGEV-------------------RGRGAMLAIEIVKPGTL  391 (453)
T ss_dssp             HHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE-------------------EEETTEEEEEEBCTTSC
T ss_pred             HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-------------------EeeceEEEEEEecCccc
Confidence            444333332111 1223333444444554444    44431111                   146779999883     


Q ss_pred             --CHHHHHHHHHHhhc
Q 013079          361 --TEEKANRLMNYLQN  374 (450)
Q Consensus       361 --~~~~~~~~~~~l~~  374 (450)
                        .......+...+..
T Consensus       392 ~~~~~~~~~~~~~l~~  407 (453)
T 4ffc_A          392 EPDAALTKSIAAEALS  407 (453)
T ss_dssp             CBCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence              34446667776654

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.88  E-value=3.7e-21  Score=197.89  Aligned_cols=243  Identities=10%  Similarity=0.060  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHhCCC-----------eEEEecChHHHHHHHHHHHHHhccC---------CC--------E--EEEeCCCc
Q 013079          102 LNLSRQMAALEGTE-----------AAYCTASDKAGMSAISSVLMQLCSS---------GG--------H--VVAARTLY  151 (450)
Q Consensus       102 ~~l~~~iA~l~g~~-----------~~~~tsg~~~gt~ai~~al~~l~~~---------gd--------~--Vi~~~~~y  151 (450)
                      +++++.+++++|.+           ..++|+|   ||+|+.+++.++...         ||        .  |+++.+.|
T Consensus       116 ~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~g---gTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h  192 (486)
T 1js3_A          116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGS---ASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH  192 (486)
T ss_dssp             HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESC---HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred             HHHHHHHHHHhCCCchhcccCCCCCCeEEcCC---cHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCc
Confidence            34555667888865           3699999   999999998765321         42        3  78899999


Q ss_pred             hhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCc------eEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079          152 GGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRT------KVLYFESISNPTLAVANIPELSRLAHDKGV  220 (450)
Q Consensus       152 ~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t------~lv~i~~~~NptG~v~~l~~I~~la~~~gi  220 (450)
                      .++...+.     ..|++++.++.+     |+++|+++| ++++      .+|++++++|+||.+.|+++|+++|+++|+
T Consensus       193 ~s~~~~~~-----~~G~~v~~v~~d~~~~~d~~~L~~~i-~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~  266 (486)
T 1js3_A          193 SSVERAGL-----IGGVKLKAIPSDGKFAMRASALQEAL-ERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDI  266 (486)
T ss_dssp             HHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHH-----hCCCceEEeecCCCCCCCHHHHHHHH-HHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            99888775     368888888874     899999999 5555      388899999999999999999999999999


Q ss_pred             EEEEeCCCCCCC--CC-cc----C-CCCeEEEeCCCCccccCccceEEEEEc-CHHH-HHHHH---HHhhh-hh------
Q 013079          221 TVVVDNTFSPLV--LS-PA----R-LGADVVVHSISKFISGGADIIAGAVCG-PANL-VNSMM---DLHQG-AL------  280 (450)
Q Consensus       221 ~livD~~~~~~~--~~-~~----~-~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~-~~~l~---~~~~~-~~------  280 (450)
                      ++|+|++|+...  .. ..    . .++|.++.|+||+++++ ..+ |+++. ++.. .+.+.   .+..+ ..      
T Consensus       267 ~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~-G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~  344 (486)
T 1js3_A          267 WLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDC-SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLIT  344 (486)
T ss_dssp             EEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSC-EEEEESCHHHHHGGGC------------CCSCC
T ss_pred             EEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cce-EEEEEeCHHHHHHHhcCCchhhCCCcccccCCC
Confidence            999999995432  11 11    1 26899999999999975 445 77655 4443 23221   00000 00      


Q ss_pred             ------hccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCc
Q 013079          281 ------MLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGF  351 (450)
Q Consensus       281 ------~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~  351 (450)
                            ...+........+.++.  +.+.+.+..++..++++++.+.|++.+ +++..+.                   .
T Consensus       345 ~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-------------------~  405 (486)
T 1js3_A          345 DYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-------------------T  405 (486)
T ss_dssp             CGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-------------------C
T ss_pred             CccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-------------------c
Confidence                  00111122222322222  335567777888889999999999874 3554321                   2


Q ss_pred             CcEEEEEeCC-HHHHHHHHHHhhc
Q 013079          352 GGLLCLDMET-EEKANRLMNYLQN  374 (450)
Q Consensus       352 g~~~~~~l~~-~~~~~~~~~~l~~  374 (450)
                      +++++|.+++ ......+.+.|..
T Consensus       406 ~~~v~f~~~~~~~~~~~l~~~L~~  429 (486)
T 1js3_A          406 LGLVCFRLKGSDGLNEALLERINS  429 (486)
T ss_dssp             SSEEEEEESSCHHHHHHHHHHHHH
T ss_pred             eeEEEEEecChHHHHHHHHHHHHh
Confidence            3488898874 2224667777654

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.88  E-value=4.8e-21  Score=198.11  Aligned_cols=294  Identities=11%  Similarity=0.097  Sum_probs=192.2

Q ss_pred             CChhHHHHHH----HHHHHhCCC----eEEEecChHHHHHHHHHHHHHhcc--------------CCCEEEEeCCCchhH
Q 013079           97 FNPTVLNLSR----QMAALEGTE----AAYCTASDKAGMSAISSVLMQLCS--------------SGGHVVAARTLYGGT  154 (450)
Q Consensus        97 ~~~~~~~l~~----~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~--------------~gd~Vi~~~~~y~~~  154 (450)
                      ..|...++++    .+++++|.+    .++||+|   ||+|+..++.++..              +++.|+++...|.++
T Consensus       129 ~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~g---gt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~  205 (511)
T 3vp6_A          129 IAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPG---GAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSI  205 (511)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESS---HHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHH
T ss_pred             cCchHHHHHHHHHHHHHHHhCCCCCCCceEECCc---hHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHH
Confidence            4555555544    567777765    5799999   99999999887654              467899999999999


Q ss_pred             HHHHHHhCCCccCe---eEEEeCCC-----CHHHHHHhhhcCC------ceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079          155 HALLTHFFPRACNI---TTTFVDIS-----DHEMVNSAIVQGR------TKVLYFESISNPTLAVANIPELSRLAHDKGV  220 (450)
Q Consensus       155 ~~~~~~~~~~~~g~---~v~~v~~~-----d~~~l~~ai~~~~------t~lv~i~~~~NptG~v~~l~~I~~la~~~gi  220 (450)
                      ...+..     .|.   ++..++.+     |+++|+++| +++      +++|++++++|++|.+.|+++|+++|+++|+
T Consensus       206 ~~~~~~-----~g~g~~~~~~v~~d~~~~~d~~~Le~~i-~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~  279 (511)
T 3vp6_A          206 KKAGAA-----LGFGTDNVILIKCNERGKIIPADFEAKI-LEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL  279 (511)
T ss_dssp             HHHHHH-----TTSCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTC
T ss_pred             HHHHHH-----cCCCCCcEEEeecCCCCccCHHHHHHHH-HHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCC
Confidence            888752     344   77777765     899999999 433      8899999999999999999999999999999


Q ss_pred             EEEEeCCCCC-CCCCc----c---CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhh-----------
Q 013079          221 TVVVDNTFSP-LVLSP----A---RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM-----------  281 (450)
Q Consensus       221 ~livD~~~~~-~~~~~----~---~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~-----------  281 (450)
                      ++|+|++|+. ....+    .   ..++|+++.++||+++.+.. .|++++.++.++.........+..           
T Consensus       280 ~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g-~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~  358 (511)
T 3vp6_A          280 WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQ-CSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYD  358 (511)
T ss_dssp             EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSC-CEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGC
T ss_pred             EEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcC-eEEEEEeCHHHHHHHhccCCccccCcccccccccC
Confidence            9999999933 32221    1   12579999999999886633 434445566555544221111100           


Q ss_pred             ------ccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          282 ------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       282 ------~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                            ..+.......++.++.  +.+.+.+++++..++++++.+.|++.+ +++..+.-+                 ..
T Consensus       359 ~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p-----------------~~  421 (511)
T 3vp6_A          359 TGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP-----------------EH  421 (511)
T ss_dssp             CGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCC-----------------SS
T ss_pred             ccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-----------------Ce
Confidence                  0111122333333332  445677888888999999999999874 455442101                 23


Q ss_pred             cEEEEEeCCH---------H-------HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCC
Q 013079          353 GLLCLDMETE---------E-------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAG  416 (450)
Q Consensus       353 ~~~~~~l~~~---------~-------~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~  416 (450)
                      ++++|.+...         .       ....+.+.|...   |.+.++..        + .              +-..+
T Consensus       422 ~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---G~~~~~~~--------~-~--------------~~~~~  475 (511)
T 3vp6_A          422 TNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES---GTTMVGYQ--------P-Q--------------GDKAN  475 (511)
T ss_dssp             SCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH---TSCEEEEE--------E-E--------------TTEEE
T ss_pred             EEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc---CCEEEEEE--------E-e--------------CCceE
Confidence            3677765311         0       122455555432   21222210        0 0              00124


Q ss_pred             eEEEEe-CCCCCHHHHHHHHHHHHHHhhh
Q 013079          417 LVRMSV-GYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       417 ~iRiS~-g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      .+||++ + ..++.+.++.+.+++.++.+
T Consensus       476 ~lRi~~~~-~~~t~~di~~ll~~i~~~~~  503 (511)
T 3vp6_A          476 FFRMVISN-PAATQSDIDFLIEEIERLGQ  503 (511)
T ss_dssp             EEEECCCC-TTCCHHHHHHHHHHHHHHHC
T ss_pred             EEEEEecC-CCCCHHHHHHHHHHHHHHHH
Confidence            799999 5 67788888888888887643

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.88  E-value=8e-21  Score=193.55  Aligned_cols=292  Identities=16%  Similarity=0.121  Sum_probs=181.4

Q ss_pred             ccCCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHhCCC---
Q 013079           93 YSRHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHFFPR---  164 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~~~~---  164 (450)
                      +..+..+...+++++|+++.+   .+.++||+|   |++|+.++++.+..  .+++|++..+.|++...........   
T Consensus        98 ~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~s---GseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~  174 (451)
T 3oks_A           98 FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNS---GSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMP  174 (451)
T ss_dssp             TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred             CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCc---HHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcc
Confidence            445667888999999999985   467999999   99999999987653  4478999999999865443221100   


Q ss_pred             ------ccCeeEEEeCCC------------------CHHHHHHhhh---c-CCceEEEEecCCCCcccccC----HHHHH
Q 013079          165 ------ACNITTTFVDIS------------------DHEMVNSAIV---Q-GRTKVLYFESISNPTLAVAN----IPELS  212 (450)
Q Consensus       165 ------~~g~~v~~v~~~------------------d~~~l~~ai~---~-~~t~lv~i~~~~NptG~v~~----l~~I~  212 (450)
                            .....+..++..                  +++.+++.+.   . +++++|++++++++.|.+.+    +++|.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~  254 (451)
T 3oks_A          175 YKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLL  254 (451)
T ss_dssp             TTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHH
T ss_pred             cccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHH
Confidence                  011134455443                  2344444442   1 45778888887777777766    99999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCC
Q 013079          213 RLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGP  285 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~  285 (450)
                      ++|++||+++|+||+|+++...       ......|++  |++|.+++ |+|+ |++++++++++.+..... ..+..++
T Consensus       255 ~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G~~i-G~v~~~~~~~~~~~~~~~-~~t~~~~  329 (451)
T 3oks_A          255 DWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-GLPL-SAVTGRAEIMDSPHVSGL-GGTYGGN  329 (451)
T ss_dssp             HHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSC-EEEEEEHHHHTCSCTTSB-CCSSSSC
T ss_pred             HHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-Ccce-EEEEECHHHHhhhcCCCc-CCCCCCC
Confidence            9999999999999999655321       112235666  58899996 8998 899889888877654332 2223334


Q ss_pred             CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH----hCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe--
Q 013079          286 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK----KLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM--  359 (450)
Q Consensus       286 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~----~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l--  359 (450)
                      .+.+.++..++..++. ....++..++.+++.+.|+    +++.....                   .+.|.++++.+  
T Consensus       330 ~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~G~~~~~~~~~  389 (451)
T 3oks_A          330 PIACAAALATIETIES-EGLVARAQQIEKIMKDRLGRLQAEDDRIGDV-------------------RGRGAMIAMELVK  389 (451)
T ss_dssp             HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-------------------EEETTEEEEEEBS
T ss_pred             HHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-------------------EEeeEEEEEEEec
Confidence            3444333333322111 1223344444555555554    34431111                   14677999998  


Q ss_pred             -----CCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          360 -----ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       360 -----~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                           +.......+...+...   | +.+..+                         +...+.+||++. ...+++.++.
T Consensus       390 ~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------~~~~~~iRi~~~-~~~t~e~i~~  439 (451)
T 3oks_A          390 AGTTEPDADLTKALCAGAHAA---G-VIVLSC-------------------------GTYGNVVRFLPP-LSIGDDLLNE  439 (451)
T ss_dssp             TTSCCBCHHHHHHHHHHHHHT---T-EECEEE-------------------------CTTSCEEEECCC-TTCCHHHHHH
T ss_pred             CccCCCCHHHHHHHHHHHHhC---C-cEEecC-------------------------CCCCCEEEEECC-CCCCHHHHHH
Confidence                 3444566777776642   3 332221                         111368999988 6656666666


Q ss_pred             HHHHHHHh
Q 013079          435 FEKALSRM  442 (450)
Q Consensus       435 l~~al~~~  442 (450)
                      +.++|.++
T Consensus       440 ~l~~l~~~  447 (451)
T 3oks_A          440 GLDVLEEV  447 (451)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666544

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.88  E-value=2.9e-21  Score=197.81  Aligned_cols=243  Identities=12%  Similarity=0.169  Sum_probs=160.6

Q ss_pred             ccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHHhC
Q 013079           93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFF  162 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~  162 (450)
                      +.++.++...+++++|+++.+  .+.++|++|   |++|+..+++.+..        .+++||+..+.|+++........
T Consensus        93 ~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~s---GseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~  169 (472)
T 3hmu_A           93 FFKTTHVPAIALAQKLAELAPGDLNHVFFAGG---GSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALG  169 (472)
T ss_dssp             SSSEECHHHHHHHHHHHHHSCTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHS
T ss_pred             ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCC---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhcc
Confidence            345567889999999999985  467999999   99999999998764        46789999999988654332111


Q ss_pred             C---------CccCeeEEEeCCC---------C--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HH
Q 013079          163 P---------RACNITTTFVDIS---------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IP  209 (450)
Q Consensus       163 ~---------~~~g~~v~~v~~~---------d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~  209 (450)
                      .         ...+  +..++.+         |        +++|++++..   +++++|++++++|++|.+.+    ++
T Consensus       170 ~~~~~~~~~~~~~~--~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~  247 (472)
T 3hmu_A          170 GMAGMHAQSGLIPD--VHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWP  247 (472)
T ss_dssp             CCHHHHHTTCCCSS--EEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHH
T ss_pred             CChhhccccCCCCC--cEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHH
Confidence            0         0012  3334322         1        7888888831   56889999999999999887    99


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh-hhhhh
Q 013079          210 ELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH-QGALM  281 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~-~~~~~  281 (450)
                      +|.++|+++|+++|+||+|+++....       .....|+++  ++|.+++.++++ |++++++++++.+.... ....+
T Consensus       248 ~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~~pl-G~v~~~~~i~~~~~~~~~~~~~t  324 (472)
T 3hmu_A          248 EIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGYAPI-GGSIVCDEVAHVIGKDEFNHGYT  324 (472)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCC-EEEEEEHHHHHHHTTSCBCCCCT
T ss_pred             HHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCCcce-EEEEECHHHHHhcccCCccccCC
Confidence            99999999999999999996663221       122467776  779999776898 89989999988872110 11112


Q ss_pred             ccCCCchHHHHHHHHccCCcHHHHHHHHH-HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          282 LLGPTMNPKVAFELSERIPHLGLRMKEHC-HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       282 ~~g~~~~~~~a~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ..++.+.+.++..++..++. +...++.. ++.+++.+.|+++..   .|...             ...+.|.++.|++.
T Consensus       325 ~~~np~a~aAa~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~l~~---~~~v~-------------~vr~~G~~~~i~~~  387 (472)
T 3hmu_A          325 YSGHPVAAAVALENLRILEE-ENILDHVRNVAAPYLKEKWEALTD---HPLVG-------------EAKIVGMMASIALT  387 (472)
T ss_dssp             TTTCHHHHHHHHHHHHHHHH-TTHHHHHHHTHHHHHHHHHHGGGG---STTEE-------------EEEEETTEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhc---CCCeE-------------EEEecCceEEEEEe
Confidence            33333433333333322211 12344455 666777777765421   11100             11246779999986

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.88  E-value=7.4e-22  Score=199.81  Aligned_cols=218  Identities=17%  Similarity=0.184  Sum_probs=153.2

Q ss_pred             CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhcc--CCCEEEEeCCCchhHHHHHHHh---------CC
Q 013079           96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLCS--SGGHVVAARTLYGGTHALLTHF---------FP  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~~--~gd~Vi~~~~~y~~~~~~~~~~---------~~  163 (450)
                      +.++...+++++|++++ +.+.++||+|   |++|+..+++.+..  .+++|++..+.|++........         .+
T Consensus        90 ~~~~~~~~l~~~la~~~~~~~~v~~~~~---Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~  166 (429)
T 3k28_A           90 APTEIENKLAKLVIERVPSIEIVRMVNS---GTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLP  166 (429)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----C
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCC---hHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCC
Confidence            45788899999999998 5788999999   99999999987653  5678999999998654221100         00


Q ss_pred             CccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          164 RACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       164 ~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~  231 (450)
                      ...++      .+..++.+|+++|++++..  +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~  246 (429)
T 3k28_A          167 DSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF  246 (429)
T ss_dssp             CCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             CcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence            00111      3455566699999998832  56789999998989999988    999999999999999999999665


Q ss_pred             CCCc-------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcH
Q 013079          232 VLSP-------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHL  302 (450)
Q Consensus       232 ~~~~-------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l  302 (450)
                       ...       .....|++  ++||.+++ |+++ |++++++++++.+.....  ...+..++.+.+.++..++...+  
T Consensus       247 -~~g~~~~~~~~~~~~di~--t~sK~~~~-G~~i-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~--  319 (429)
T 3k28_A          247 -RVAYNCGQGYYGVTPDLT--CLGKVIGG-GLPV-GAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT--  319 (429)
T ss_dssp             -TSSTTHHHHHHTCCCSEE--EECGGGGT-TSCC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC--
T ss_pred             -ccCcchHHHHhCCCCcee--hhhhhhcC-CCCe-EEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH--
Confidence             211       12235665  48899985 8998 999999988877643221  11112333344444444444443  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC
Q 013079          303 GLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      ++..++..++++++.+.|++.
T Consensus       320 ~~~~~~~~~~~~~l~~~L~~~  340 (429)
T 3k28_A          320 PESYVEFERKAEMLEAGLRKA  340 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            556667778888888888663

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.88  E-value=4.1e-21  Score=198.45  Aligned_cols=219  Identities=10%  Similarity=0.041  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHhCCC----eEEEecChHHHHHHHHHHHHHhcc--------CC-----C-EEEEeCCCchhHHHHHHHhCC
Q 013079          102 LNLSRQMAALEGTE----AAYCTASDKAGMSAISSVLMQLCS--------SG-----G-HVVAARTLYGGTHALLTHFFP  163 (450)
Q Consensus       102 ~~l~~~iA~l~g~~----~~~~tsg~~~gt~ai~~al~~l~~--------~g-----d-~Vi~~~~~y~~~~~~~~~~~~  163 (450)
                      +++.+.+++++|.+    .++||+|   ||+|+.+++.++..        +|     + .|+++.+.|+++...+... .
T Consensus       135 ~~~~~~la~~~g~~~~~~~~~~t~g---gtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~-g  210 (504)
T 2okj_A          135 QITLKKMREIVGWSSKDGDGIFSPG---GAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL-G  210 (504)
T ss_dssp             HHHHHHHHHHHTCCSSSCEEEEESS---HHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT-T
T ss_pred             HHHHHHHHHHhCCCCCCCCEEEeCC---cHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc-C
Confidence            44556779999865    5899999   99999999987642        46     6 7899999999998887522 1


Q ss_pred             CccCe-eEEEeCCC-----CHHHHHHhhhcC------CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          164 RACNI-TTTFVDIS-----DHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       164 ~~~g~-~v~~v~~~-----d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~  231 (450)
                        .|. +++.++.+     |+++|++++ ++      ++++|++++++|+||.+.|+++|+++|+++|+++|+|++|+..
T Consensus       211 --~g~~~v~~v~~~~~~~~d~~~L~~~i-~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~  287 (504)
T 2okj_A          211 --FGTDNVILIKCNERGKIIPADFEAKI-LEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG  287 (504)
T ss_dssp             --SCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred             --CCcccEEEEecCCCCCCCHHHHHHHH-HHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhH
Confidence              244 77888765     899999998 43      5899999999999999999999999999999999999999433


Q ss_pred             CC-C-----ccC-C-CCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCC-----------------
Q 013079          232 VL-S-----PAR-L-GADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGP-----------------  285 (450)
Q Consensus       232 ~~-~-----~~~-~-g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~-----------------  285 (450)
                      .. .     ... + ++|+++.|+||+++++. .+ |+++.+ ++++.........+....+.                 
T Consensus       288 ~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~-~~-g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r  365 (504)
T 2okj_A          288 LLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QC-SAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGR  365 (504)
T ss_dssp             GGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CC-EEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSC
T ss_pred             HHhCHhhHhhcCCcccCCEEEECchhhcCCCc-ce-EEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCC
Confidence            21 1     111 2 68999999999999653 35 777655 45555432111111100000                 


Q ss_pred             CchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeC
Q 013079          286 TMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLY  329 (450)
Q Consensus       286 ~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~  329 (450)
                      .......++.+.  +.+.+.+..++..++++++.+.|++.+ +++..
T Consensus       366 r~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~  412 (504)
T 2okj_A          366 HVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVF  412 (504)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESS
T ss_pred             CccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            011222222222  234456667778889999999998874 45543

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.88  E-value=4.7e-21  Score=195.83  Aligned_cols=315  Identities=14%  Similarity=0.079  Sum_probs=184.4

Q ss_pred             CC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccC-----C---
Q 013079           71 ME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSS-----G---  141 (450)
Q Consensus        71 ~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~-----g---  141 (450)
                      +. .+++.+.+..      +.+.|+  ..+...+++++||++++.+.++||+|   |++|+++++++++.+     |   
T Consensus        53 ~~v~~a~~~~l~~------~~~~y~--~~~~~~~l~~~la~~~~~~~v~~t~~---gt~A~~~al~~~~~~~~~~~G~~~  121 (467)
T 2oqx_A           53 GAVTQSMQAAMMR------GDEAYS--GSRSYYALAESVKNIFGYQYTIPTHQ---GRGAEQIYIPVLIKKREQEKGLDR  121 (467)
T ss_dssp             SCCCHHHHHHTTS------CCCCSS--SCHHHHHHHHHHHHHHCCSEEEEEC-----CCSHHHHHHHHHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHhcc------Ccceec--cCchhHHHHHHHHHHhCcCcEEEcCC---cHHHHHHHHHHHhccccccCCCCc
Confidence            44 3666666532      112344  35678899999999999999999999   999999999998887     8   


Q ss_pred             -CEEEEeCCCchh-HHHHHHHhCCCccCeeEEE------eC------C---CCHHHHHHhhhc---CCceEEEEecCCCC
Q 013079          142 -GHVVAARTLYGG-THALLTHFFPRACNITTTF------VD------I---SDHEMVNSAIVQ---GRTKVLYFESISNP  201 (450)
Q Consensus       142 -d~Vi~~~~~y~~-~~~~~~~~~~~~~g~~v~~------v~------~---~d~~~l~~ai~~---~~t~lv~i~~~~Np  201 (450)
                       |+|++. +.|.. +..... .    .|..+..      ++      .   .|+++|++++..   +++++|++++|+||
T Consensus       122 ~d~Ii~~-~~h~~t~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~  195 (467)
T 2oqx_A          122 SKMVAFS-NYFFDTTQGHSQ-I----NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS  195 (467)
T ss_dssp             TTCEEEE-SSCCHHHHHHHH-H----TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCG
T ss_pred             cceEEec-ccccccchhhhh-c----cCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccC
Confidence             998877 44433 223222 1    1222211      11      1   289999999932   47999999999999


Q ss_pred             c-cccc---CHHHHHHHHHhcCCEEEEeCCCCC-------------CCCCccC------CCCeEEEeCCCCccccCccce
Q 013079          202 T-LAVA---NIPELSRLAHDKGVTVVVDNTFSP-------------LVLSPAR------LGADVVVHSISKFISGGADII  258 (450)
Q Consensus       202 t-G~v~---~l~~I~~la~~~gi~livD~~~~~-------------~~~~~~~------~g~di~~~S~sK~~g~~g~~i  258 (450)
                      + |.+.   ++++|+++|++||+++|+|+++..             ...++..      ...|+++.|+||.++++   +
T Consensus       196 ~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~  272 (467)
T 2oqx_A          196 AGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---M  272 (467)
T ss_dssp             GGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---S
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---C
Confidence            8 7765   478999999999999999976511             1122222      23688899999999866   3


Q ss_pred             EEEEEcCHH-HHHHHHHHhhh-----hhhccCCCchHHHHHHHHccCC-cH-HHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079          259 AGAVCGPAN-LVNSMMDLHQG-----ALMLLGPTMNPKVAFELSERIP-HL-GLRMKEHCHRALIFARRMKKLGLKVLYP  330 (450)
Q Consensus       259 gG~l~~~~~-~~~~l~~~~~~-----~~~~~g~~~~~~~a~~~~~~~~-~l-~~~~~~~~~~~~~l~~~L~~~~~~v~~p  330 (450)
                      ||+++++++ +++.+...+..     .....+. ........+...++ .+ ..++++..++++++.+.|++++..+. |
T Consensus       273 Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~  350 (467)
T 2oqx_A          273 GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG-LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-Q  350 (467)
T ss_dssp             CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-E
T ss_pred             ceEEEecChhHHHHHHHHHHhhhccCCcccccc-hhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHCCCeee-c
Confidence            588887765 44433322211     0001122 22221111111111 11 23445556778899999988765544 4


Q ss_pred             CCCCCchhHHHHHHhccCCCcCcEEEEEeC----C--HHH--HHHHHHHh-hccccccccccccccccccccccccccCC
Q 013079          331 GLEDHPHHELLKSMANKEYGFGGLLCLDME----T--EEK--ANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGSSTSS  401 (450)
Q Consensus       331 ~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~----~--~~~--~~~~~~~l-~~~~~~g~i~vs~G~~~s~~~~~~~~~~~  401 (450)
                      .                   .|.++++.++    +  ...  ...+...| ..   .| +.++.|+.|.....+...  .
T Consensus       351 ~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g-v~~~~~~~~~~~~~~~~g--~  405 (467)
T 2oqx_A          351 A-------------------GGHAAFVDAGKLLPHIPADQFPAQALACELYKV---AG-IRAVEIGSFLLGRDPKTG--K  405 (467)
T ss_dssp             E-------------------CSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHH---HC-EECEEESHHHHCBCTTTC--S
T ss_pred             C-------------------CceEEEEechhhcccCCcccccHHHHHHHHHHh---cC-ceeccccccccccccccc--c
Confidence            2                   2457778773    1  111  34456666 43   23 566654433211100000  0


Q ss_pred             CCCHHHHHhcCCCCCeEEEEeCCCC-CHHHHHHHHHHHHHH
Q 013079          402 ELNAEEKALAGISAGLVRMSVGYLG-TLDQRWSQFEKALSR  441 (450)
Q Consensus       402 ~~~~~~~~~~g~~~~~iRiS~g~~~-~~~~~i~~l~~al~~  441 (450)
                              ......+.||||++ .. .+++.++.+.++|.+
T Consensus       406 --------~~~~~~~~iRl~~~-~~~~t~e~i~~~~~~l~~  437 (467)
T 2oqx_A          406 --------QLPCPAELLRLTIP-RATYTQTHMDFIIEAFKH  437 (467)
T ss_dssp             --------BCCCSCCEEEECCC-TTTSCHHHHHHHHHHHHH
T ss_pred             --------cccCccCeEEEEec-CCCCCHHHHHHHHHHHHH
Confidence                    00011478999999 76 555555555444443

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.87  E-value=1.4e-20  Score=191.64  Aligned_cols=294  Identities=12%  Similarity=0.100  Sum_probs=185.1

Q ss_pred             CCCChhHHHHHHHHHHHhCCC-eEEEecChHHHHHHHHHHHHHhc-----c---CCCEEEEeCCCchhHHHHHHHhCCC-
Q 013079           95 RHFNPTVLNLSRQMAALEGTE-AAYCTASDKAGMSAISSVLMQLC-----S---SGGHVVAARTLYGGTHALLTHFFPR-  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~~-~~~~tsg~~~gt~ai~~al~~l~-----~---~gd~Vi~~~~~y~~~~~~~~~~~~~-  164 (450)
                      .+.++...+++++|+++++.+ .++||+|   |++|++.+++.+.     .   ++++|++..+.|++........... 
T Consensus        87 ~~~~~~~~~la~~l~~~~~~~~~v~~~~g---gseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~  163 (452)
T 3n5m_A           87 SQSHEPAIKLAEKLNEWLGGEYVIFFSNS---GSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQA  163 (452)
T ss_dssp             TSEEHHHHHHHHHHHHHHTSCEEEEEESS---HHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCG
T ss_pred             ccCCHHHHHHHHHHHHhCCCCceEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCch
Confidence            456788899999999998742 3899999   9999999999876     4   6789999999998865433211100 


Q ss_pred             -------ccCeeEEEeCC--------CC---------HHHHHHhhh---cCCceEEEEecC-CCCcccccC----HHHHH
Q 013079          165 -------ACNITTTFVDI--------SD---------HEMVNSAIV---QGRTKVLYFESI-SNPTLAVAN----IPELS  212 (450)
Q Consensus       165 -------~~g~~v~~v~~--------~d---------~~~l~~ai~---~~~t~lv~i~~~-~NptG~v~~----l~~I~  212 (450)
                             .....+.+++.        .|         +++|++++.   .+++++|+++++ +| +|.+.+    +++|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~  242 (452)
T 3n5m_A          164 QRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVH  242 (452)
T ss_dssp             GGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHH
T ss_pred             hhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHH
Confidence                   01112344443        23         899999983   267889999999 89 998876    99999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCCC-----c--cCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHH---Hhh--hh
Q 013079          213 RLAHDKGVTVVVDNTFSPLVLS-----P--ARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD---LHQ--GA  279 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~~~~-----~--~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~---~~~--~~  279 (450)
                      ++|++||+++|+||+|.++...     .  .....|+++  ++|.+++ | +|+ |++++++++++.+..   .+.  ..
T Consensus       243 ~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~-G~~~i-g~~~~~~~i~~~~~~~~~~~~~~~~  318 (452)
T 3n5m_A          243 ETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITS-AYLPL-SATAVKREIYEAFKGKGEYEFFRHI  318 (452)
T ss_dssp             HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGT-TSSCC-EEEEEEHHHHGGGCSSSTTCSCCCC
T ss_pred             HHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccC-CCcce-EEEEECHHHHHHHhhccCCCCcccc
Confidence            9999999999999999655321     1  122356664  8899997 8 998 899999988877642   111  11


Q ss_pred             hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       280 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                      .+..++.+.+.++..++..++. +...++..++.+++.+.|++.    +.....                   .+.|.++
T Consensus       319 ~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~g~~~  378 (452)
T 3n5m_A          319 NTFGGNPAACALALKNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDI-------------------RGKGLLV  378 (452)
T ss_dssp             CSSTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE-------------------EESSSCE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE-------------------EEEEEEE
Confidence            1123333333333333322111 123344555556666666543    321111                   1456788


Q ss_pred             EEEeCC---------HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079          356 CLDMET---------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG  426 (450)
Q Consensus       356 ~~~l~~---------~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~  426 (450)
                      ++.+..         .+....+...+..   .| +.+..++.+.                     ...++.|||+++ ..
T Consensus       379 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~---~G-v~~~~~~~~~---------------------~~~~~~iRi~~~-~~  432 (452)
T 3n5m_A          379 GIELVNDKETKEPIDNDKIASVVNACKE---KG-LIIGRNGMTT---------------------AGYNNILTLAPP-LV  432 (452)
T ss_dssp             EEEEEEETTTTEECCHHHHHHHHHHHHH---TT-EECEECTTSS---------------------TTCCCEEEECCC-TT
T ss_pred             EEEEecCCcccCCCCHHHHHHHHHHHHH---CC-cEEeecCccc---------------------CCCCCEEEEECC-CC
Confidence            888731         2233456666554   23 3333332110                     011578999988 76


Q ss_pred             CHHHHHHHHHHHHHHh
Q 013079          427 TLDQRWSQFEKALSRM  442 (450)
Q Consensus       427 ~~~~~i~~l~~al~~~  442 (450)
                      .+++.++.+.++|+++
T Consensus       433 ~t~e~i~~~l~~l~~~  448 (452)
T 3n5m_A          433 ISSEEIAFVIGTLKTA  448 (452)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            6666677766666654

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.87  E-value=8.3e-22  Score=199.70  Aligned_cols=252  Identities=13%  Similarity=0.173  Sum_probs=167.3

Q ss_pred             CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhC---------C
Q 013079           96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFF---------P  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~---------~  163 (450)
                      +..+...++++.|++++ +.+.++||+|   |++|+.++++..  +..+++||+..+.|++.........         +
T Consensus        93 ~~~~~~~~l~~~la~~~~~~~~v~~~~s---gseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p  169 (434)
T 2epj_A           93 APGEAEVLLAEKILGYVKRGGMIRFVNS---GTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVP  169 (434)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEE
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCC---HHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCC
Confidence            35778899999999999 7889999999   999999999862  3446789998899987543210000         0


Q ss_pred             CccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          164 RACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       164 ~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~  231 (450)
                      ...|+      .+..++..|+++|++++.+  +++++|++++++|++|.+.+    +++|.++|+++|+++|+||+|+++
T Consensus       170 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~  249 (434)
T 2epj_A          170 TSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF  249 (434)
T ss_dssp             SSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT
T ss_pred             CCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce
Confidence            11233      3555666799999999832  47889999988889999988    999999999999999999999765


Q ss_pred             CCCc------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHH
Q 013079          232 VLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG  303 (450)
Q Consensus       232 ~~~~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~  303 (450)
                      ....      .....|++  |++|.+++ |+++ |++++++++++.+.....  ...+..++.+.+.++..++..++. .
T Consensus       250 ~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~-~  324 (434)
T 2epj_A          250 RLGLEGAQGYFNIEGDII--VLGKIIGG-GFPV-GAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE-E  324 (434)
T ss_dssp             TSSTTHHHHHHTCCCSEE--EEEGGGGT-TSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH-S
T ss_pred             eCCcchhhHHhCCCCCee--eecchhcC-Ccce-eeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh-c
Confidence            3211      12246765  68899997 8887 999999888776643111  011112222232232222222211 1


Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHH
Q 013079          304 LRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKAN  366 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~  366 (450)
                      ...++..++++++.+.|+++    +.....+                   +.|.++++.++.             .....
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  385 (434)
T 2epj_A          325 PVYSVSREAAKALEEAASEVLDRTGLPYTIN-------------------RVESMMQLFIGVEEVSNAAQARKADKKFYV  385 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE-------------------EETTEEEEEETCSCCSSHHHHTTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-------------------EeeeEEEEEEeCCCcccchhccccCHHHHH
Confidence            23455666777777777653    3311111                   357799999874             23356


Q ss_pred             HHHHHhhc
Q 013079          367 RLMNYLQN  374 (450)
Q Consensus       367 ~~~~~l~~  374 (450)
                      .+.+.|..
T Consensus       386 ~~~~~l~~  393 (434)
T 2epj_A          386 KLHEEMLR  393 (434)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            67777764

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.87  E-value=5.5e-21  Score=194.56  Aligned_cols=173  Identities=14%  Similarity=0.148  Sum_probs=119.7

Q ss_pred             CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc----CC----CEEEEeCCCchhHHHHHHHhCCC
Q 013079           95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS----SG----GHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~----~g----d~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      .+..+...+++++++++.+  .+.++||+|   |++|+..+++.+..    +|    |+|++..+.|++...........
T Consensus        83 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~s---GseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~  159 (448)
T 3dod_A           83 GMTNVPATQLAETLIDISPKKLTRVFYSDS---GAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSI  159 (448)
T ss_dssp             SSEEHHHHHHHHHHHHHSCTTEEEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC----------------
T ss_pred             ccCCHHHHHHHHHHHHhCCCCCCEEEEeCc---hHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCC
Confidence            4556788999999999984  478999999   99999999988765    44    89999999998865332111000


Q ss_pred             --------ccCeeEEEeCCCC----------------HHHHHHhhh--cCCceEEEEecCC-CCcccccC----HHHHHH
Q 013079          165 --------ACNITTTFVDISD----------------HEMVNSAIV--QGRTKVLYFESIS-NPTLAVAN----IPELSR  213 (450)
Q Consensus       165 --------~~g~~v~~v~~~d----------------~~~l~~ai~--~~~t~lv~i~~~~-NptG~v~~----l~~I~~  213 (450)
                              .....+..++.++                +++|++++.  .+++++|++++++ |++|.+.+    +++|.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~  239 (448)
T 3dod_A          160 ELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRE  239 (448)
T ss_dssp             -------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHH
T ss_pred             ccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHH
Confidence                    0011233344333                788999883  2567899999998 99998765    999999


Q ss_pred             HHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHH
Q 013079          214 LAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~  274 (450)
                      +|++||+++|+||+|+++...       ......|+++  ++|.+++ | .++ |++++++++++.+..
T Consensus       240 l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t--~sK~l~~-G~~~i-g~v~~~~~~~~~~~~  304 (448)
T 3dod_A          240 LCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMA--AGKGITG-GYLPI-AVTFATEDIYKAFYD  304 (448)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TSSCC-EEEEEEHHHHHTTCS
T ss_pred             HHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEE--ecccccC-CcCce-EEEEECHHHHHHhhh
Confidence            999999999999998655321       1122356664  7899985 8 498 999999988887754

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.87  E-value=3.7e-21  Score=197.33  Aligned_cols=297  Identities=12%  Similarity=0.135  Sum_probs=189.2

Q ss_pred             CCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhcc--------CCCEEEEeCCCchhHHHHHHHhCCC
Q 013079           95 RHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLCS--------SGGHVVAARTLYGGTHALLTHFFPR  164 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~~--------~gd~Vi~~~~~y~~~~~~~~~~~~~  164 (450)
                      .+.++...+++++|+++.+  .+.++||+|   |++|+..+++.+..        .++.||+..+.|++...........
T Consensus        93 ~~~~~~~~~la~~l~~~~~~~~~~v~~~~s---GseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~  169 (476)
T 3i5t_A           93 YMATSPAARLAEKIATLTPGDLNRIFFTTG---GSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGR  169 (476)
T ss_dssp             TCBCHHHHHHHHHHHTTSSTTCCEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCC
T ss_pred             ccCCHHHHHHHHHHHhcCCCCcCEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCC
Confidence            4567889999999999984  578999999   99999999988753        2568999999999865443211000


Q ss_pred             --------ccCeeEEEeCCC--------C--------HHHHHHhhhc---CCceEEEEecCCCCcccccC----HHHHHH
Q 013079          165 --------ACNITTTFVDIS--------D--------HEMVNSAIVQ---GRTKVLYFESISNPTLAVAN----IPELSR  213 (450)
Q Consensus       165 --------~~g~~v~~v~~~--------d--------~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~----l~~I~~  213 (450)
                              .....+.+++..        |        +++|++++..   +++++|++++++|++|.+.+    +++|.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~  249 (476)
T 3i5t_A          170 TGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKA  249 (476)
T ss_dssp             GGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             hhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence                    001123333321        1        7888888832   56889999999999998665    999999


Q ss_pred             HHHhcCCEEEEeCCCCCCCCC--------ccCCCCeEEEeCCCCccccCc-cceEEEEEcCHHHHHHHHHHh------hh
Q 013079          214 LAHDKGVTVVVDNTFSPLVLS--------PARLGADVVVHSISKFISGGA-DIIAGAVCGPANLVNSMMDLH------QG  278 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~~--------~~~~g~di~~~S~sK~~g~~g-~~igG~l~~~~~~~~~l~~~~------~~  278 (450)
                      +|+++|+++|+||+|+++...        ......|+++  ++|.+++ | +++ |++++++++++.+....      ..
T Consensus       250 lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~-G~~pl-g~v~~~~~i~~~~~~~~~~~~~~~~  325 (476)
T 3i5t_A          250 ICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTS-GYVPL-GGLAISEAVLARISGENAKGSWFTN  325 (476)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGT-TSSCC-EEEEECHHHHHTTSGGGCTTCEECC
T ss_pred             HHHHcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcC-CCcCe-EEEEECHHHHHHHhcCCcccccccc
Confidence            999999999999999665321        1122467775  7899995 7 898 89999999888775431      11


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLD  358 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~  358 (450)
                      ..+..++.+.+.++..++..++. +...++..++.+++.+.|+++..   .|...             ...+.|.+++++
T Consensus       326 ~~t~~~np~a~aAa~aaL~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~-------------~v~~~G~~~~i~  388 (476)
T 3i5t_A          326 GYTYSNQPVACAAALANIELMER-EGIVDQAREMADYFAAALASLRD---LPGVA-------------ETRSVGLVGCVQ  388 (476)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHTTTT---STTEE-------------EEEEETTEEEEE
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc---CCCeE-------------EEEecCceeEEE
Confidence            12233333333333333322211 22345566777788888875431   11110             112467799999


Q ss_pred             eCCHH-----------HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---
Q 013079          359 METEE-----------KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---  424 (450)
Q Consensus       359 l~~~~-----------~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~---  424 (450)
                      +....           ....+.+.+..   .| +.+.          +               .   .+.|||++.+   
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~G-v~v~----------~---------------~---g~~iRi~p~l~~t  436 (476)
T 3i5t_A          389 CLLDPTRADGTAEDKAFTLKIDERCFE---LG-LIVR----------P---------------L---GDLCVISPPLIIS  436 (476)
T ss_dssp             ECCC-----CCHHHHHHHHHHHHHHHH---TT-EECE----------E---------------E---TTEEEECCCTTCC
T ss_pred             EecCccccccccchhHHHHHHHHHHHH---CC-CEEE----------e---------------c---CCEEEEECCCCCC
Confidence            87321           24455565543   23 2211          1               1   2679999661   


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcCC
Q 013079          425 LGTLDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       425 ~~~~~~~i~~l~~al~~~~~~~~  447 (450)
                      .+++++.++.|.+++.++.+..+
T Consensus       437 ~e~i~~~l~~l~~~l~~~~~~~~  459 (476)
T 3i5t_A          437 RAQIDEMVAIMRQAITEVSAAHG  459 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            25566667777777776655444

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.87  E-value=7.6e-21  Score=196.94  Aligned_cols=222  Identities=14%  Similarity=0.060  Sum_probs=152.9

Q ss_pred             hhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhc-------c-CCC------EEEEeCCCchhHHHHHHHhC
Q 013079           99 PTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLC-------S-SGG------HVVAARTLYGGTHALLTHFF  162 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~-------~-~gd------~Vi~~~~~y~~~~~~~~~~~  162 (450)
                      ...+++++.+++++|.+  .++||+|   ||+|+.+++.++.       + +|+      +|+++...|+++...+... 
T Consensus       148 ~le~~~~~~la~l~g~~~~~~~~t~g---gtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~-  223 (515)
T 2jis_A          148 LMEEEVLRKLRALVGWSSGDGIFCPG---GSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL-  223 (515)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEEEEESS---HHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEcCC---cHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc-
Confidence            34567788899999975  6899999   9999999988763       2 465      8999999999998877522 


Q ss_pred             CCccCe-eEEEeCCC-----CHHHHHHhhhcC------CceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC
Q 013079          163 PRACNI-TTTFVDIS-----DHEMVNSAIVQG------RTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP  230 (450)
Q Consensus       163 ~~~~g~-~v~~v~~~-----d~~~l~~ai~~~------~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~  230 (450)
                      .  .|. +++.++.+     |+++|++++ ++      ++++|++++++|+||.+.|+++|+++|+++|+++|+|++|+.
T Consensus       224 g--~g~~~v~~v~~~~~~~~d~~~L~~~i-~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~  300 (515)
T 2jis_A          224 G--LGTDSVRVVKADERGKMVPEDLERQI-GMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGG  300 (515)
T ss_dssp             T--SCGGGEEEECBCTTSCBCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGG
T ss_pred             C--CCCCcEEEEecCCCCcCCHHHHHHHH-HHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhh
Confidence            1  233 77888764     899999998 43      489999999999999999999999999999999999999943


Q ss_pred             CCC--C-----ccCC-CCeEEEeCCCCccccCccceEEEEEcCHH--HHHHHH----HHhhhhhh------c-------c
Q 013079          231 LVL--S-----PARL-GADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMM----DLHQGALM------L-------L  283 (450)
Q Consensus       231 ~~~--~-----~~~~-g~di~~~S~sK~~g~~g~~igG~l~~~~~--~~~~l~----~~~~~~~~------~-------~  283 (450)
                      ...  +     ...+ ++|+++.|+||+++++. .+ |+++.+++  +++...    .+..+...      .       .
T Consensus       301 ~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~-g~-G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~  378 (515)
T 2jis_A          301 SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL-QC-SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQC  378 (515)
T ss_dssp             GGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CC-EEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCS
T ss_pred             HHHhChhhHhhcCCCccCCEEEECcccccCCCC-Ce-eEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCC
Confidence            322  1     1123 68999999999998553 25 77765544  555421    11100000      0       0


Q ss_pred             CCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeC
Q 013079          284 GPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLY  329 (450)
Q Consensus       284 g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~  329 (450)
                      +-.......+..+.  +.+.+.+..++..++++++.+.|++.+ +++..
T Consensus       379 ~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~  427 (515)
T 2jis_A          379 GRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVM  427 (515)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS
T ss_pred             CCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence            00011222222222  223455667778889999999999874 35543

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.87  E-value=9.5e-21  Score=195.36  Aligned_cols=286  Identities=11%  Similarity=0.056  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh----c---------cC------CC-EEEEeCCCchhHHHHH
Q 013079          102 LNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL----C---------SS------GG-HVVAARTLYGGTHALL  158 (450)
Q Consensus       102 ~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l----~---------~~------gd-~Vi~~~~~y~~~~~~~  158 (450)
                      +++++.+++++|.   +.++||+|   ||+|+.+++.++    +         .+      |+ +|+++.+.|.++...+
T Consensus       143 ~~~~~~la~~~g~~~~~~~~~t~g---gt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~  219 (497)
T 2qma_A          143 QKVVNWLCDKYDLSEKADGIFTSG---GTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSA  219 (497)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESS---HHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCeEEcCC---chHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHH
Confidence            3446669999986   56899999   999999999873    3         12      46 7999999999988877


Q ss_pred             HHhCCCccCe-eEEEeCCC-----CHHHHHHhhhcC---Cce--EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC
Q 013079          159 THFFPRACNI-TTTFVDIS-----DHEMVNSAIVQG---RTK--VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT  227 (450)
Q Consensus       159 ~~~~~~~~g~-~v~~v~~~-----d~~~l~~ai~~~---~t~--lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~  227 (450)
                      . .+.  .|. +++.++.+     |+++|++++...   .++  +|++++++|+||.+.|+++|+++|+++|+++|+|++
T Consensus       220 ~-~~g--~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a  296 (497)
T 2qma_A          220 S-WMG--LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGA  296 (497)
T ss_dssp             H-HTT--SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEET
T ss_pred             H-HcC--CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehh
Confidence            4 221  243 67777765     889999988321   244  888899999999999999999999999999999999


Q ss_pred             CCCCC--CC----ccCC-CCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhcc----CCC---------
Q 013079          228 FSPLV--LS----PARL-GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLL----GPT---------  286 (450)
Q Consensus       228 ~~~~~--~~----~~~~-g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~----g~~---------  286 (450)
                      |+...  .+    ...+ ++|+++.|+||+++++. ++ |+++ .++..++.+..... +....    +..         
T Consensus       297 ~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~-~~-G~l~~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~~~~~~~r  373 (497)
T 2qma_A          297 YGGALILSSHKSRLKGVERAHSISVDFHKLFYQTI-SC-GALLVNDKSNFKFLLHHAD-YLNREHDELPNLVDKSIATTK  373 (497)
T ss_dssp             TGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCS-SC-EEEEESCGGGGGGGCC---------------------CCSC
T ss_pred             hhHHHHhCcchHhhcCcccCCEEEEcchhccCCCc-ce-EEEEEeCHHHHHHhcCCch-hcCCccccCCCccccCCCCCC
Confidence            94332  22    1122 67999999999888764 56 6665 45544433311000 00000    000         


Q ss_pred             -chHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH
Q 013079          287 -MNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE  362 (450)
Q Consensus       287 -~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~  362 (450)
                       ......+..++  +.+.+...+++..++++++.+.|++.+ +++..+.                   .+++++|.+...
T Consensus       374 ~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-------------------~~~~v~f~~~~~  434 (497)
T 2qma_A          374 RFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-------------------SLSTVLFRATHE  434 (497)
T ss_dssp             CCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-------------------SSSEEEEEECCS
T ss_pred             chhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-------------------CceEEEEEEcCC
Confidence             01122222233  223455677778889999999999874 3543332                   245899998632


Q ss_pred             -----HHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe-CCCCCHHHHHHHHH
Q 013079          363 -----EKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV-GYLGTLDQRWSQFE  436 (450)
Q Consensus       363 -----~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~-g~~~~~~~~i~~l~  436 (450)
                           .....+.+.+...   | +.+..+          ..            .+ ..+.||||+ + ..++++.++.+.
T Consensus       435 ~~~~~~l~~~l~~~l~~~---G-~~~~~~----------~~------------~~-g~~~lRis~~~-~~~t~edi~~~~  486 (497)
T 2qma_A          435 TADLDELNKALRLEALTR---G-IAVLGE----------TI------------VD-GKTALKFTILN-PCLTTSDFESLL  486 (497)
T ss_dssp             SSCHHHHHHHHHHHHHHH---T-SCBCEE----------EE------------ET-TEEEEEEECCC-TTCCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC---C-CEEEEe----------eE------------EC-CEEEEEEEecC-CCCCHHHHHHHH
Confidence                 1123444444431   2 111100          00            00 135799998 6 777777888877


Q ss_pred             HHHHHhh
Q 013079          437 KALSRMQ  443 (450)
Q Consensus       437 ~al~~~~  443 (450)
                      ++|.++.
T Consensus       487 ~~l~~~~  493 (497)
T 2qma_A          487 SKINMLA  493 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.87  E-value=3.5e-21  Score=196.23  Aligned_cols=237  Identities=14%  Similarity=0.116  Sum_probs=150.4

Q ss_pred             CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHH---hccCCCEEEEeCCCchhHHHHHHHhC------CCc
Q 013079           96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQ---LCSSGGHVVAARTLYGGTHALLTHFF------PRA  165 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~------~~~  165 (450)
                      +..+..+++.+.+++.. +.+.++||+|   |++|+.++++.   +.. +++||+.++.|++.........      +..
T Consensus        94 ~~~~~~~~la~~l~~~~~~~~~v~~~~g---g~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  169 (453)
T 2cy8_A           94 ASHPLEVRWAERIVAAFPSIRKLRFTGS---GTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPA  169 (453)
T ss_dssp             SSCHHHHHHHHHHHHHCTTCSEEEEESC---HHHHHHHHHHHHHHHHC-CCEEEEECC----------------------
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEEEeCC---HHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcC
Confidence            35677888888888877 6788999999   99999999987   544 4789999999997654321100      111


Q ss_pred             cCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          166 CNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       166 ~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                      .|+      .+..++..|+++|++++.+  +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+++..
T Consensus       170 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~  249 (453)
T 2cy8_A          170 PGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRV  249 (453)
T ss_dssp             ------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred             CCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccccc
Confidence            133      3455666799999999832  47889988888888999887    99999999999999999999976522


Q ss_pred             Cc------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH---Hh-hhhhhccCCCchHHHHHHHHcc-CCcH
Q 013079          234 SP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD---LH-QGALMLLGPTMNPKVAFELSER-IPHL  302 (450)
Q Consensus       234 ~~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~---~~-~~~~~~~g~~~~~~~a~~~~~~-~~~l  302 (450)
                      ..      .....|++  |++|.+++ |+++ |++++++++++.+..   .. ....+..++.+.+.++..++.. +  .
T Consensus       250 g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~--~  323 (453)
T 2cy8_A          250 GNHGMQALLDVQPDLT--CLAKASAG-GLPG-GILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL--E  323 (453)
T ss_dssp             CTTHHHHHHTCCCSEE--EEEGGGGT-TSSC-EEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH--H
T ss_pred             CchhhhHHhCCCCcEE--EEChhhhC-Ccce-EEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh--h
Confidence            11      12245765  68899996 8887 999999888776543   10 0011122333333333333322 2  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          303 GLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       303 ~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      +...++..++++++.+.|+++    +.....+                   +.|.++++.++.
T Consensus       324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~  367 (453)
T 2cy8_A          324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAY-------------------GRFSGFHLMPGL  367 (453)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-------------------CCTTEEEEEETS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-------------------EeeeEEEEEEec
Confidence            234455666777777777653    3311111                   357799999974

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.86  E-value=2.2e-20  Score=191.51  Aligned_cols=289  Identities=11%  Similarity=0.072  Sum_probs=186.7

Q ss_pred             CChhHHHHHHH----HHHHhCCC-----------eEEEecChHHHHHHHHHHHHHhcc-------------------CCC
Q 013079           97 FNPTVLNLSRQ----MAALEGTE-----------AAYCTASDKAGMSAISSVLMQLCS-------------------SGG  142 (450)
Q Consensus        97 ~~~~~~~l~~~----iA~l~g~~-----------~~~~tsg~~~gt~ai~~al~~l~~-------------------~gd  142 (450)
                      ..|...++++.    +++++|.+           ..+||+|   ||+|+..++.+...                   +++
T Consensus       107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~g---gt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~  183 (475)
T 3k40_A          107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGT---ASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL  183 (475)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESC---HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCc---hHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence            35666666655    57777765           4799999   99999998876521                   235


Q ss_pred             EEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC----CHHHHHHhhhcCC------ceEEEEecCCCCcccccCHHHHH
Q 013079          143 HVVAARTLYGGTHALLTHFFPRACNITTTFVDIS----DHEMVNSAIVQGR------TKVLYFESISNPTLAVANIPELS  212 (450)
Q Consensus       143 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~----d~~~l~~ai~~~~------t~lv~i~~~~NptG~v~~l~~I~  212 (450)
                      .|+++..+|.++...+.     ..|.+++.++.+    |+++|+++| +++      +.+|+++.++|++|.+.|+++|+
T Consensus       184 ~vi~s~~~H~s~~~~~~-----~~g~~~~~v~~d~~~~d~~~L~~~i-~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~  257 (475)
T 3k40_A          184 VGYCSDQAHSSVERAGL-----LGGVKLRSVQSENHRMRGAALEKAI-EQDVAEGLIPFYAVVTLGTTNSCAFDYLDECG  257 (475)
T ss_dssp             EEEEETTSCHHHHHHHH-----HHTCEEEEECCBTTBCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHH
T ss_pred             EEEECCCchHHHHHHHH-----HcCCceEEEECCCCCcCHHHHHHHH-HHHHHCCCccEEEEEEecCCCCcCcCCHHHHH
Confidence            79999999999988875     368889898874    899999998 432      67888899999999999999999


Q ss_pred             HHHHhcCCEEEEeCCCCCC-CCCc----cCC---CCeEEEeCCCCccccCccceEEEEEcCHHHHH-HHHHHhhhhhh--
Q 013079          213 RLAHDKGVTVVVDNTFSPL-VLSP----ARL---GADVVVHSISKFISGGADIIAGAVCGPANLVN-SMMDLHQGALM--  281 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~-~~~~----~~~---g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~-~l~~~~~~~~~--  281 (450)
                      ++|+++|+++|+|++|+.. ...+    ...   .+|.++.|+||+++.|.. +|++++.++..+. .+.. ...+..  
T Consensus       258 ~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~-~~~yl~~~  335 (475)
T 3k40_A          258 PVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFD-CSAMWLKDPSWVVNAFNV-DPLYLKHD  335 (475)
T ss_dssp             HHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESSGGGC---------------
T ss_pred             HHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCc-eEEEEEeCHHHHHHHhcC-CccccCCC
Confidence            9999999999999999432 2211    111   369999999998876543 4344555554432 2211 000000  


Q ss_pred             ------------ccCC-CchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHh
Q 013079          282 ------------LLGP-TMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMA  345 (450)
Q Consensus       282 ------------~~g~-~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~  345 (450)
                                  ..++ .......+.+++  +.+.+.++.++..++++++.+.|++.+ +++..|.              
T Consensus       336 ~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~--------------  401 (475)
T 3k40_A          336 MQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI--------------  401 (475)
T ss_dssp             -------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC--------------
T ss_pred             cCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC--------------
Confidence                        0001 011222222222  334566777888999999999999984 4554332              


Q ss_pred             ccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC
Q 013079          346 NKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY  424 (450)
Q Consensus       346 ~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~  424 (450)
                           ..++++|.+++ ......+.+.|...   |.+.++.+          ..            .  ....+||+++.
T Consensus       402 -----~~~iv~f~~~~~~~~~~~l~~~L~~~---g~~~~~~~----------~~------------~--g~~~lR~~~~~  449 (475)
T 3k40_A          402 -----NMGLVCFRLKGSNERNEALLKRINGR---GHIHLVPA----------KI------------K--DVYFLRMAICS  449 (475)
T ss_dssp             -----BTTEEEEEESSCHHHHHHHHHHHHHH---TSCBCEEE----------EE------------T--TEEEEEEECCC
T ss_pred             -----ceEEEEEEeCCchHHHHHHHHHHHhC---CcEEEEee----------EE------------C--CEEEEEEEeCC
Confidence                 23589999863 44456777777642   21222211          10            0  13679999872


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 013079          425 LGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       425 ~~~~~~~i~~l~~al~~~  442 (450)
                      ..++++.++.+.++|.++
T Consensus       450 ~~tt~~di~~~~~~i~~~  467 (475)
T 3k40_A          450 RFTQSEDMEYSWKEVSAA  467 (475)
T ss_dssp             TTCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            334556666666555544

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.86  E-value=3.8e-21  Score=195.85  Aligned_cols=288  Identities=14%  Similarity=0.143  Sum_probs=182.2

Q ss_pred             CCCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc---c-----------CCCEEEEeCCCchhHHHH
Q 013079           95 RHFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC---S-----------SGGHVVAARTLYGGTHAL  157 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~---~-----------~gd~Vi~~~~~y~~~~~~  157 (450)
                      ++..+...++++.|+++++   .+.++||+|   |++|++.+++.+.   .           +||+||+..+.|++....
T Consensus        97 ~~~~~~~~~la~~la~~~~~~~~~~v~~~~~---gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~  173 (449)
T 2cjg_A           97 DVYSVAMARFVETFARVLGDPALPHLFFVEG---GALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGY  173 (449)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTT
T ss_pred             ccCCHHHHHHHHHHHHhcCCCCCCEEEEeCc---hHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccc
Confidence            3566778999999999984   578999999   9999999997542   2           288999999999875432


Q ss_pred             HHHh----------CCCccCeeEEEeCCCC--H-------------HHHHHhhh--cCCceEEEEecCCCCcccccC---
Q 013079          158 LTHF----------FPRACNITTTFVDISD--H-------------EMVNSAIV--QGRTKVLYFESISNPTLAVAN---  207 (450)
Q Consensus       158 ~~~~----------~~~~~g~~v~~v~~~d--~-------------~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---  207 (450)
                      ....          ... ....+.+++.+|  .             ++|++++.  .+++++|++++++||+|.+.+   
T Consensus       174 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~  252 (449)
T 2cjg_A          174 TLSLTNTKPTITARFPK-FDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPE  252 (449)
T ss_dssp             GGGTCCSCHHHHTTSCC-CCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHH
T ss_pred             hhhhcCCchhhcccCCC-CCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHH
Confidence            1110          000 122566666555  2             33888773  267899999988999998776   


Q ss_pred             -HHHHHHHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH--H--
Q 013079          208 -IPELSRLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD--L--  275 (450)
Q Consensus       208 -l~~I~~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~--~--  275 (450)
                       +++|.++|++||+++|+||+|+++...       ......|++  |++|.+     ++ |++++++++++.+..  .  
T Consensus       253 ~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l-----~i-G~~~~~~~~~~~l~~~~~~~  324 (449)
T 2cjg_A          253 FFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT-----QV-CGVMAGRRVDEVADNVFAVP  324 (449)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG-----SS-EEEEECGGGGGSTTCTTTST
T ss_pred             HHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc-----cE-EEEEECHHHhhhhhhcccCC
Confidence             999999999999999999999655322       112346766  478988     46 888888887765221  0  


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHHHHHHhccCCCcCcE
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .....+..++.+.+.++..++..+.. ....++..++++++.+.|+++...  +|. +.             ...+.|.+
T Consensus       325 ~~~~~t~~~n~~~~~aa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~--~~~~~~-------------~~~~~g~~  388 (449)
T 2cjg_A          325 SRLNSTWGGNLTDMVRARRILEVIEA-EGLFERAVQHGKYLRARLDELAAD--FPAVVL-------------DPRGRGLM  388 (449)
T ss_dssp             TSSCCSSSSCHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH--STTTSE-------------EEEEETTE
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhh--CCCcee-------------eEeeccEE
Confidence            11111122333333333333322211 223455677778888888753100  111 00             00135779


Q ss_pred             EEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          355 LCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       355 ~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      ++|+++.......+.+.|...   | +.+..+                         |  .+.||||++ ...+++.++.
T Consensus       389 ~~~~~~~~~~~~~~~~~l~~~---G-v~v~~~-------------------------g--~~~iRi~~~-~~~t~e~i~~  436 (449)
T 2cjg_A          389 CAFSLPTTADRDELIRQLWQR---A-VIVLPA-------------------------G--ADTVRFRPP-LTVSTAEIDA  436 (449)
T ss_dssp             EEEECSSHHHHHHHHHHHHHT---T-EECEEE-------------------------T--TTEEEECCC-TTCCHHHHHH
T ss_pred             EEEEECChHHHHHHHHHHHHC---C-eEEecC-------------------------C--CCEEEEECC-CCCCHHHHHH
Confidence            999998654456777777542   3 333321                         1  378999988 6666666666


Q ss_pred             HHHHHHHh
Q 013079          435 FEKALSRM  442 (450)
Q Consensus       435 l~~al~~~  442 (450)
                      +.++|.++
T Consensus       437 ~l~~l~~~  444 (449)
T 2cjg_A          437 AIAAVRSA  444 (449)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.86  E-value=3.4e-20  Score=190.40  Aligned_cols=290  Identities=12%  Similarity=0.100  Sum_probs=190.6

Q ss_pred             CChhHHHHHHHH----HHHhCCC------------eEEEecChHHHHHHHHHHHHHhcc-------------------CC
Q 013079           97 FNPTVLNLSRQM----AALEGTE------------AAYCTASDKAGMSAISSVLMQLCS-------------------SG  141 (450)
Q Consensus        97 ~~~~~~~l~~~i----A~l~g~~------------~~~~tsg~~~gt~ai~~al~~l~~-------------------~g  141 (450)
                      ..|...++++.+    ++++|.+            ..+||+|   ||+|+..++.+...                   ++
T Consensus       112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~g---gt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~  188 (481)
T 4e1o_A          112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQST---VSESTLIALLAARKNKILEMKTSEPDADESSLNAR  188 (481)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESC---HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCc---hHHHHHHHHHHHHHHHHHHhhhcCcccccccccCC
Confidence            356666666654    6667753            4599999   99999999876532                   46


Q ss_pred             CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCC------ceEEEEecCCCCcccccCHHH
Q 013079          142 GHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGR------TKVLYFESISNPTLAVANIPE  210 (450)
Q Consensus       142 d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~------t~lv~i~~~~NptG~v~~l~~  210 (450)
                      +.|+++...|.++...+.     ..|.+++.++.+     |+++|+++| +++      +.+|+++.++|++|.+.|+++
T Consensus       189 ~~v~~s~~~H~s~~~~~~-----~~g~~~~~v~~~~~~~~d~~~Le~~i-~~~~~~g~~~~~vv~~~~~t~~G~id~l~~  262 (481)
T 4e1o_A          189 LVAYASDQAHSSVEKAGL-----ISLVKMKFLPVDDNFSLRGEALQKAI-EEDKQRGLVPVFVCATLGTTGVCAFDCLSE  262 (481)
T ss_dssp             EEEEEETTSCHHHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHH-HHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred             eEEEEcCcchHHHHHHHH-----hCCCceEEEEcCCCCcCCHHHHHHHH-HHHHhCCCCcEEEEEecCCCCCcCcCCHHH
Confidence            789999999999988874     357888888865     899999999 432      678888999999999999999


Q ss_pred             HHHHHHhcCCEEEEeCCCCCC-CCCc----cCCC---CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhh-
Q 013079          211 LSRLAHDKGVTVVVDNTFSPL-VLSP----ARLG---ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALM-  281 (450)
Q Consensus       211 I~~la~~~gi~livD~~~~~~-~~~~----~~~g---~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~-  281 (450)
                      |+++|++||+++|+|++|+.. ...+    ...|   +|.++.++||+++.|.. +|++++.++..+.........+.. 
T Consensus       263 I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g-~g~l~~~~~~~l~~~~~~~~~yl~~  341 (481)
T 4e1o_A          263 LGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFD-CTGFWVKDKYKLQQTFSVNPIYLRH  341 (481)
T ss_dssp             HHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSS-CEEEEESBHHHHHTTTCCCCGGGCC
T ss_pred             HHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCc-eEEEEEeCHHHHHHHhcCCchhccC
Confidence            999999999999999999432 2111    1113   59999999999887654 345556666554322111111100 


Q ss_pred             --------------ccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHH
Q 013079          282 --------------LLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSM  344 (450)
Q Consensus       282 --------------~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~  344 (450)
                                    ..+........+.++.  +.+.+.+++++..++++++.+.|++.+ +++..|.             
T Consensus       342 ~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~-------------  408 (481)
T 4e1o_A          342 ANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR-------------  408 (481)
T ss_dssp             TTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC-------------
T ss_pred             cccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------------
Confidence                          0111112233333222  345567778888999999999999874 3554332             


Q ss_pred             hccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079          345 ANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG  423 (450)
Q Consensus       345 ~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g  423 (450)
                            ..++++|.+++ ......+.+.|...   |.+.++.+          ..              .....+|||++
T Consensus       409 ------~~~~v~f~~~~~~~~~~~l~~~L~~~---g~~~~~~~----------~~--------------~g~~~lR~~~~  455 (481)
T 4e1o_A          409 ------HLGLVVFRLKGPNSLTENVLKEIAKA---GRLFLIPA----------TI--------------QDKLIIRFTVT  455 (481)
T ss_dssp             ------CSSEEEEEESSCHHHHHHHHHHHHHH---CSSBCEEE----------EE--------------TTEEEEEEECC
T ss_pred             ------ceeEEEEEeCCchHHHHHHHHHHHhC---CeEEEEee----------EE--------------CCEEEEEEEeC
Confidence                  23489999963 44456777777642   21222211          00              01357999987


Q ss_pred             CCCCHHHHHHHHHHHHHHh
Q 013079          424 YLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       424 ~~~~~~~~i~~l~~al~~~  442 (450)
                      ...++++.++.+.++|.++
T Consensus       456 ~~~tt~~di~~~~~~i~~~  474 (481)
T 4e1o_A          456 SQFTTRDDILRDWNLIRDA  474 (481)
T ss_dssp             CTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            2333566666666666554

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.86  E-value=1.4e-20  Score=190.30  Aligned_cols=239  Identities=15%  Similarity=0.187  Sum_probs=154.3

Q ss_pred             CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHH---------HhCC
Q 013079           96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLT---------HFFP  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~---------~~~~  163 (450)
                      +.++...++++++++++ +.+.++||+|   |++|++++++.+.  ..+++|++..+.|++......         ...+
T Consensus        90 ~~~~~~~~la~~l~~~~~~~~~v~~~~s---Gsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~  166 (429)
T 4e77_A           90 APTEMEVKMAQLVTDLVPTMDMVRMVNS---GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQP  166 (429)
T ss_dssp             SCCHHHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------C
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEEEeCc---HHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCC
Confidence            35688899999999998 5678999999   9999999998543  356789999999988754210         0000


Q ss_pred             CccC------eeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          164 RACN------ITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       164 ~~~g------~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~  231 (450)
                      ...+      ..+..++..|+++|++++..  +++++|+++++++++|.+.+    +++|.++|+++|+++|+||+|+++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~  246 (429)
T 4e77_A          167 NSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF  246 (429)
T ss_dssp             CCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT
T ss_pred             CcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence            0012      24455666799999999842  46788888887777888887    999999999999999999999755


Q ss_pred             CCC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHH
Q 013079          232 VLS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG  303 (450)
Q Consensus       232 ~~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~  303 (450)
                      ...      ......|++  |++|.++ +|+++ |++++++++++.+.....  ...+..++.+.+.++..++..++. +
T Consensus       247 r~g~~~~~~~~~~~pdi~--t~sK~~~-~G~~~-G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~  321 (429)
T 4e77_A          247 RVALAGAQDYYHVIPDLT--CLGKIIG-GGMPV-GAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ-V  321 (429)
T ss_dssp             TTBTTCHHHHTTCCCSEE--EEEGGGG-TTSCC-EEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS-T
T ss_pred             ccCcchHHHhcCCCCCee--eeccccc-CCCCe-EEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh-c
Confidence            211      112235665  6889999 58998 899999988877653211  111122333333333333332211 2


Q ss_pred             HHHHHHHHHHHHHHHHHHh----CCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          304 LRMKEHCHRALIFARRMKK----LGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~----~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      ...++..++.+++.+.|++    ++.....                   .+.|.++++.++.
T Consensus       322 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-------------------~~~g~~~~~~~~~  364 (429)
T 4e77_A          322 GVYETLTELTDSLATGLRHAAKEENIPLVV-------------------NHVGGMFGLFFTN  364 (429)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCCCEE-------------------EEETTEEEEECCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCceEE-------------------EEeeeEEEEEEcc
Confidence            2334445555555555544    3331111                   1467899999874

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.86  E-value=6.5e-20  Score=195.55  Aligned_cols=221  Identities=12%  Similarity=0.080  Sum_probs=151.5

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEE-ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHH-HHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYC-TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL-LTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~-tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~-~~~~~~~~~g~~v~~v~  174 (450)
                      ......++++.+|+++|++..++ ++|   +++|+.+++.+++++||+|+++.++|.++... +.     ..|.++++++
T Consensus       171 ~~~~i~e~e~~lA~~~gae~~i~v~nG---tt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~-----l~Ga~~v~v~  242 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNADKTYFVLGG---SSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALA-----MAGGRPVYLQ  242 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCSEEEEESSH---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTT-----TTCCEEEEEC
T ss_pred             ChHHHHHHHHHHHHHHCCCcEEEECCH---HHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHH-----HCCCEEEEEe
Confidence            34578999999999999988655 455   56999999999999999999999999998876 32     3688877765


Q ss_pred             C----------CCHHHH-----HHhhhcCC------c----eEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC
Q 013079          175 I----------SDHEMV-----NSAIVQGR------T----KVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS  229 (450)
Q Consensus       175 ~----------~d~~~l-----~~ai~~~~------t----~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~  229 (450)
                      .          .|+++|     ++++ +++      +    ++|++++| |++|.+.|+++|+++|+++|+++|+|++|+
T Consensus       243 ~~~~~~~i~g~id~e~L~~~~le~~i-~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~  320 (730)
T 1c4k_A          243 TNRNPYGFIGGIYDSDFDEKKIRELA-AKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWV  320 (730)
T ss_dssp             EEECTTCCEEEECGGGSCHHHHHHHT-TTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTC
T ss_pred             CCccccCccCCCCHHHHhhhHHHHHh-hcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccc
Confidence            3          166666     8888 544      5    89999998 589999999999999999999999999983


Q ss_pred             -CCCC-------CccCC---CCe----EEEeCCCCccccCccceEEEEEcC-HHH--------HHHHHHHhhhhhhccCC
Q 013079          230 -PLVL-------SPARL---GAD----VVVHSISKFISGGADIIAGAVCGP-ANL--------VNSMMDLHQGALMLLGP  285 (450)
Q Consensus       230 -~~~~-------~~~~~---g~d----i~~~S~sK~~g~~g~~igG~l~~~-~~~--------~~~l~~~~~~~~~~~g~  285 (450)
                       .+.+       ++...   ++|    +++.|+||+++++.  .||+++.+ +.+        ...+..... ......+
T Consensus       321 ~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~-~~~stsp  397 (730)
T 1c4k_A          321 GYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFN-LFMSTSP  397 (730)
T ss_dssp             CGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHH-HHSCSSC
T ss_pred             cccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHH-HhCCCCC
Confidence             3222       22333   777    99999999988654  34677432 221        122222211 1001122


Q ss_pred             CchHHHHHH-HHccCC--cHHHHHHHHHHHHHHHHHHHHh-C-CCeeeCC
Q 013079          286 TMNPKVAFE-LSERIP--HLGLRMKEHCHRALIFARRMKK-L-GLKVLYP  330 (450)
Q Consensus       286 ~~~~~~a~~-~~~~~~--~l~~~~~~~~~~~~~l~~~L~~-~-~~~v~~p  330 (450)
                      .....++.. +...+.  ...++.++..++++++++.|++ . ++++..|
T Consensus       398 ~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p  447 (730)
T 1c4k_A          398 FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVP  447 (730)
T ss_dssp             CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSC
T ss_pred             cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccc
Confidence            222222211 111122  2355677788888999999988 3 4565444

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.86  E-value=2.2e-20  Score=189.56  Aligned_cols=282  Identities=13%  Similarity=0.104  Sum_probs=183.5

Q ss_pred             ChhHHHHHHHHHHHhCCCeE--EEecChHHHHHHHHHHHHH-hccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           98 NPTVLNLSRQMAALEGTEAA--YCTASDKAGMSAISSVLMQ-LCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~--~~tsg~~~gt~ai~~al~~-l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .+..+++++.+++++|.+..  ++|+|   ++.++++++.+ ..++||+|+++.++|+++...+...... .|+++++++
T Consensus       107 ~~~~~~~~~~la~~~g~~~~~i~~~~g---~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~-~G~~v~~v~  182 (438)
T 1wyu_A          107 LQATFEYQTMIAELAGLEIANASMYDG---ATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEA-VGAKLLTLP  182 (438)
T ss_dssp             HHHHHHHHHHHHHHHTSSEECSCBSSH---HHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEeCc---HHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHH-CCCEEEEEc
Confidence            35678999999999998754  78999   88443333332 2478999999999999998777543332 688998887


Q ss_pred             CC----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCC---CCCCCCCccCCCCeEEEeCC
Q 013079          175 IS----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNT---FSPLVLSPARLGADVVVHSI  247 (450)
Q Consensus       175 ~~----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~---~~~~~~~~~~~g~di~~~S~  247 (450)
                      ..    |+++    + +++|++|++++| ||||.+.|+++|+++|+++|+++|+|..   ++.+ ..+..+++|++++|.
T Consensus       183 ~~~~~~d~~~----i-~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~-~~~~~~g~D~~~~s~  255 (438)
T 1wyu_A          183 LEGGRTPLPE----V-GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVL-KPPGAYGADIAVGDG  255 (438)
T ss_dssp             CBTTBCCCCC----C-CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTB-CCHHHHTCSEEEEEC
T ss_pred             CcCCccCHHH----h-CCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCc-CCCccCCCCEEEECC
Confidence            53    3333    6 678999999999 9999999999999999999999996633   3332 233456899999995


Q ss_pred             CC-----ccccCccceEEEEEcCHHHHHHHHHHhhh--------------------h-hhccCCC----chHHHHHHH--
Q 013079          248 SK-----FISGGADIIAGAVCGPANLVNSMMDLHQG--------------------A-LMLLGPT----MNPKVAFEL--  295 (450)
Q Consensus       248 sK-----~~g~~g~~igG~l~~~~~~~~~l~~~~~~--------------------~-~~~~g~~----~~~~~a~~~--  295 (450)
                      +|     +++++  ++ |+++.++++++.+.....+                    . ....+..    .....+..+  
T Consensus       256 kk~~~~~~~~Gp--~~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~  332 (438)
T 1wyu_A          256 QSLGLPMGFGGP--HF-GFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAM  332 (438)
T ss_dssp             TTTTCCCGGGCS--CC-EEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHH
T ss_pred             cccCCCccCCCC--Ce-eEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHH
Confidence            55     33334  45 8998888776554211000                    0 0001111    122222111  


Q ss_pred             -Hc--cCCcHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH
Q 013079          296 -SE--RIPHLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY  371 (450)
Q Consensus       296 -~~--~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~  371 (450)
                       +.  ..+.+.+..++..++++++.+.|+++ ++++..|.    +              .-.++.|.++.  ....+.+.
T Consensus       333 ~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~--------------~~~~~~~~~~~--~~~~~~~~  392 (438)
T 1wyu_A          333 YLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK----P--------------FFNEFALALPK--DPEAVRRA  392 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS----S--------------BCSEEEEECSS--CHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC----C--------------eEEEEEEeCCC--CHHHHHHH
Confidence             11  11235556667788899999999987 55654432    0              11245566541  24566666


Q ss_pred             hhcccccccccc--ccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          372 LQNYAQFGFMAV--SLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       372 l~~~~~~g~i~v--s~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      |...   | +.+  ..|..+                        +++.||||++ ..++++.++.+.++|.++
T Consensus       393 L~~~---g-i~v~~~~~~~~------------------------~~~~lRis~~-~~~t~edi~~~~~~l~~~  436 (438)
T 1wyu_A          393 LAER---G-FHGATPVPREY------------------------GENLALFAAT-ELHEEEDLLALREALKEV  436 (438)
T ss_dssp             HHHT---T-CCCCEECCTTS------------------------CSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred             HHHC---C-ceecccccccc------------------------CCCeEEEEec-ccCCHHHHHHHHHHHHHH
Confidence            6642   2 444  223111                        1478999999 888888889988888765

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.86  E-value=3e-21  Score=195.10  Aligned_cols=218  Identities=14%  Similarity=0.148  Sum_probs=145.8

Q ss_pred             CChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHH---------hCCC
Q 013079           97 FNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTH---------FFPR  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~---------~~~~  164 (450)
                      ..+...++++++++++ +.+.++||+|   |++|+.++++...  ..+++||+..+.|++.......         ..+.
T Consensus        90 ~~~~~~~la~~l~~~~~~~~~v~~~~g---gsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  166 (427)
T 3fq8_A           90 PCALENVLAEMVNDAVPSIEMVRFVNS---GTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPS  166 (427)
T ss_dssp             CCHHHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCS
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEeCC---HHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCC
Confidence            6788899999999998 4678999999   9999999995432  3357899999999864322100         0011


Q ss_pred             ccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          165 ACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       165 ~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                      ..|+      .+..++..|+++|++++..  +++++|++++++|++|.+.+    +++|.++|++||+++|+||+|+++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~  246 (427)
T 3fq8_A          167 SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFR  246 (427)
T ss_dssp             CSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT
T ss_pred             CCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence            0121      2555666799999999833  27899999999999999988    9999999999999999999997651


Q ss_pred             CC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHHH
Q 013079          233 LS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLGL  304 (450)
Q Consensus       233 ~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~~  304 (450)
                      ..      ......|++  |+||.++ +|+|+ |++++++++++.+.....  ...+..++.+.+.++..++..++. +.
T Consensus       247 ~g~~~~~~~~~~~~di~--t~sK~~~-~G~~~-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~-~~  321 (427)
T 3fq8_A          247 IAYGGVQEKFGVTPDLT--TLGKIIG-GGLPV-GAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ-PG  321 (427)
T ss_dssp             TBTTHHHHHTTCCCSEE--EECGGGG-TTSSC-EEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TT
T ss_pred             cCcchhhHhcCCCCChh--hhhhhhh-CCcce-EEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh-cC
Confidence            11      112235665  5779999 58998 999999988877653211  011122233333333333322211 22


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 013079          305 RMKEHCHRALIFARRMKK  322 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~  322 (450)
                      ..++..++++++.+.|++
T Consensus       322 ~~~~~~~~~~~~~~~l~~  339 (427)
T 3fq8_A          322 TYEYLDQITKRLSDGLLA  339 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344455555666666654

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.85  E-value=2.5e-20  Score=187.27  Aligned_cols=223  Identities=14%  Similarity=0.084  Sum_probs=147.0

Q ss_pred             ccccCCCChhHHHHHHHHHHHh-CC----C--eEEEecChHHHHHHHHHHHHHh----ccCCCEEEEeCCCchhHHHHHH
Q 013079           91 FIYSRHFNPTVLNLSRQMAALE-GT----E--AAYCTASDKAGMSAISSVLMQL----CSSGGHVVAARTLYGGTHALLT  159 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~-g~----~--~~~~tsg~~~gt~ai~~al~~l----~~~gd~Vi~~~~~y~~~~~~~~  159 (450)
                      |.|.-  .....+|++.+++++ |.    +  ..+-|.|   ||.|+..++..+    +.+||+|++++|.|+.+...+.
T Consensus        81 ~~Y~p--~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~g---gtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~  155 (420)
T 4h51_A           81 YEYLP--ISGYQPFIDEAVKIIYGNTVELENLVAVQTLS---GTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVK  155 (420)
T ss_dssp             CCCCC--TTCCHHHHHHHHHHHHC---CGGGEEEEEEEH---HHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHH
T ss_pred             CCCCC--cCChHHHHHHHHHHhcCCCccccccceeeecC---chHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHH
Confidence            55652  334566788888864 32    1  2366889   999888777654    4689999999999999988886


Q ss_pred             HhCCCccCee-EEEe---CCC----CHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeC
Q 013079          160 HFFPRACNIT-TTFV---DIS----DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDN  226 (450)
Q Consensus       160 ~~~~~~~g~~-v~~v---~~~----d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~  226 (450)
                      .     .|.+ +...   +..    |.+.+.+.+.  .++++++++.+||||||.+.+   +++|+++|+++++++++|+
T Consensus       156 ~-----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~  230 (420)
T 4h51_A          156 A-----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDS  230 (420)
T ss_dssp             H-----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             H-----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeeh
Confidence            2     4543 3222   211    6677666652  467888888999999999964   7799999999999999999


Q ss_pred             CCCCCCCCcc------------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHH-------HHHHhhhhhhccCCCc
Q 013079          227 TFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-------MMDLHQGALMLLGPTM  287 (450)
Q Consensus       227 ~~~~~~~~~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~-------l~~~~~~~~~~~g~~~  287 (450)
                      +|.++.+...            .....+++.|+||.++++|+|+ ||++.+....+.       +..... ......+..
T Consensus       231 ~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~r-~~~s~~p~~  308 (420)
T 4h51_A          231 AYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERA-GTLSLLLKDKTKRADVKSVMDSLIR-EEYTCPPAH  308 (420)
T ss_dssp             SCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSCHHHHHHHHHHHHHHHH-TTTSSCCHH
T ss_pred             hhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCce-EEEEecccCHHHHHHHHHHHHHhhh-cccCcchHH
Confidence            9977754311            1135688999999999999999 888654333222       222222 111222223


Q ss_pred             hHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          288 NPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       288 ~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      .+..+...+..       .+++....+++.++|+.|.+.|++.+.
T Consensus       309 ~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~  353 (420)
T 4h51_A          309 GARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQT  353 (420)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            33333333222       112334455678889999999988753

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.85  E-value=1.1e-20  Score=190.77  Aligned_cols=252  Identities=17%  Similarity=0.174  Sum_probs=165.5

Q ss_pred             CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHH--hccCCCEEEEeCCCchhHHHHHHHhC---------C
Q 013079           96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQ--LCSSGGHVVAARTLYGGTHALLTHFF---------P  163 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~--l~~~gd~Vi~~~~~y~~~~~~~~~~~---------~  163 (450)
                      +..+...++++.+++++ +.+.++||+|   |++|+.++++.  .+..++.||+.++.|+++........         +
T Consensus        89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~---g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p  165 (424)
T 2e7u_A           89 APSPLEVALAKKVKRAYPFVDLVRFVNS---GTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVP  165 (424)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCCEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEE
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEEEeCC---HHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCC
Confidence            45677899999999999 6788999999   99999999985  23345789999999987543221000         0


Q ss_pred             CccCe------eEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCC
Q 013079          164 RACNI------TTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPL  231 (450)
Q Consensus       164 ~~~g~------~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~  231 (450)
                      ...|+      .+..++..|+++|++++.+  +++++|++++.++++|.+.+    +++|.++ ++||+++|+||+|+++
T Consensus       166 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~  244 (424)
T 2e7u_A          166 SSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF  244 (424)
T ss_dssp             SSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT
T ss_pred             CCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc
Confidence            01232      3555666799999998832  46778888776667998887    9999999 9999999999999766


Q ss_pred             CCCc------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh--hhhhccCCCchHHHHHHHHccCCcHH
Q 013079          232 VLSP------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ--GALMLLGPTMNPKVAFELSERIPHLG  303 (450)
Q Consensus       232 ~~~~------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~--~~~~~~g~~~~~~~a~~~~~~~~~l~  303 (450)
                      ....      .....|++  |++|.+++ |+++ |++++++++++.+.....  ...+..++.+.+.++..++..++..+
T Consensus       245 ~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~-G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~  320 (424)
T 2e7u_A          245 RLAFGGATELLGLKPDLV--TLGKILGG-GLPA-AAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENP  320 (424)
T ss_dssp             TSSTTHHHHHHTCCCSEE--EECGGGGT-TSSC-EEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCT
T ss_pred             ccchhHHHHHhCCCcchh--hhhhhhhC-Ccce-EEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            3211      11235765  78999995 8898 999999888876643111  01112222233333323332221113


Q ss_pred             HHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-------------HHHHH
Q 013079          304 LRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-------------EEKAN  366 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-------------~~~~~  366 (450)
                      ...++..++++++.+.|+++    +.....+                   +.|.++++.++.             .....
T Consensus       321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-------------------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  381 (424)
T 2e7u_A          321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVN-------------------RVGSMITVFFTEGPVVTFQDARRTDTELFK  381 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE-------------------EETTEEEEESSSSCCCSHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-------------------eeceEEEEEEeCCCCcchhhhcccCHHHHH
Confidence            34556677777888877653    3311111                   357799999864             23355


Q ss_pred             HHHHHhhc
Q 013079          367 RLMNYLQN  374 (450)
Q Consensus       367 ~~~~~l~~  374 (450)
                      .+.+.|..
T Consensus       382 ~~~~~l~~  389 (424)
T 2e7u_A          382 RFFHGLLD  389 (424)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            67777654

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.83  E-value=5.1e-19  Score=190.20  Aligned_cols=214  Identities=13%  Similarity=0.066  Sum_probs=148.6

Q ss_pred             CChhHHHHHHHHHHHhCCCeEE-EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAY-CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~-~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ....+..+++.+++++|.+..+ +++|   +++|+.+++.+++++||+|++++++|.++...+.     ..|.++++++.
T Consensus       203 ~~g~v~~~ee~la~l~G~d~~i~~~~G---tt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~-----~~G~~~v~v~~  274 (755)
T 2vyc_A          203 HTGAFGESEKYAARVFGADRSWSVVVG---TSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLM-----LTGAKPVYMVP  274 (755)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEESSH---HHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HHCCEEEEECC
T ss_pred             CccHHHHHHHHHHHHhCCCceEEECCc---HHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHH-----HcCCEEEEEeC
Confidence            3456889999999999998765 4555   5789999999999999999999999999888764     25788888764


Q ss_pred             C---------------CHHHHHHhhhc-CCce--------EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-C
Q 013079          176 S---------------DHEMVNSAIVQ-GRTK--------VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-P  230 (450)
Q Consensus       176 ~---------------d~~~l~~ai~~-~~t~--------lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~  230 (450)
                      +               |+++|++++.. ++++        +|++++| |++|.+.|+++|+++|+++|+++|+|++|+ .
T Consensus       275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~  353 (755)
T 2vyc_A          275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY  353 (755)
T ss_dssp             CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred             CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence            2               79999999843 2454        8889988 799999999999999999999999999984 3


Q ss_pred             CCCC-------ccCCC--CeE------EEeCCCCccccCccceEEEEEcCHH---H-HHHHHHHhhhhhhccCCCchHHH
Q 013079          231 LVLS-------PARLG--ADV------VVHSISKFISGGADIIAGAVCGPAN---L-VNSMMDLHQGALMLLGPTMNPKV  291 (450)
Q Consensus       231 ~~~~-------~~~~g--~di------~~~S~sK~~g~~g~~igG~l~~~~~---~-~~~l~~~~~~~~~~~g~~~~~~~  291 (450)
                      +.+.       +. .+  +|+      ++.|+||+++++.  .||+++.+++   + ...+....... ....+.....+
T Consensus       354 ~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~~~-~s~sp~~~~ia  429 (755)
T 2vyc_A          354 ARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMH-ATTSPLYAICA  429 (755)
T ss_dssp             GGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHHHT-SCSSCCHHHHH
T ss_pred             cccCcccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHHHh-CCCCHHHHHHH
Confidence            2222       22 45  676      9999999988654  3477755432   1 12232221100 01112221122


Q ss_pred             HHH-HHccCCc--HHHHHHHHHHHHHHHHHHHHhC
Q 013079          292 AFE-LSERIPH--LGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       292 a~~-~~~~~~~--l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      +.. +...+..  ...+.++..++.+++++.|+++
T Consensus       430 al~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l  464 (755)
T 2vyc_A          430 SNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL  464 (755)
T ss_dssp             HHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            211 2222222  3456677788888888888764

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.71  E-value=6.7e-22  Score=201.06  Aligned_cols=241  Identities=16%  Similarity=0.127  Sum_probs=163.7

Q ss_pred             CCChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCccCe--eE
Q 013079           96 HFNPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNI--TT  170 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~v  170 (450)
                      +.++...+|+++|++++ +.+.++|++|   |++|+..+++.+.  ..+++||+.+..|++...... ..+...|+  .+
T Consensus       137 ~~~~~~~~Lae~L~~~~p~~~~v~~~nS---GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~  212 (465)
T 2yky_A          137 TQTENEALFAEAVCDRFPSIDLVRFTNS---GTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHV  212 (465)
Confidence            45677889999999998 6788999999   9999999998642  345899999999988654321 00111344  34


Q ss_pred             EEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc----cCCC-
Q 013079          171 TFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP----ARLG-  239 (450)
Q Consensus       171 ~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~----~~~g-  239 (450)
                      ..++..|+++|++++.+  +++++|++++++|++|.+.+    +++|.++|+++|+++|+||+|+ +....    ...+ 
T Consensus       213 ~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv  291 (465)
T 2yky_A          213 VLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGI  291 (465)
Confidence            44555689999998832  68999999988888998876    9999999999999999999998 53211    1113 


Q ss_pred             -CeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHH--h--hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHH
Q 013079          240 -ADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDL--H--QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRAL  314 (450)
Q Consensus       240 -~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~--~--~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~  314 (450)
                       .|++  |++|.+|+ |+++ ||+++++++++.+...  .  ....+..++.+.+.++...+..++. ....++..++.+
T Consensus       292 ~pDi~--t~sK~lg~-G~pi-G~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~-~~~~~~~~~~~~  366 (465)
T 2yky_A          292 SADLT--TLGKYIGG-GMSF-GAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT-RQAASDLSASGD  366 (465)
Confidence             4554  69999997 8998 9999999988877651  1  1112234444444444444433322 234455566677


Q ss_pred             HHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          315 IFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       315 ~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      ++.+.|++...+...+.               ...+.|.+++|.+.+
T Consensus       367 ~l~~~L~~~~~~~~~~~---------------~v~g~G~~~~i~~~~  398 (465)
T 2yky_A          367 RFRANLNRIAVENQAPL---------------QFTGLGSLGTIHFSR  398 (465)
Confidence            77777765421111111               112578899998864

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.79  E-value=1e-18  Score=178.98  Aligned_cols=283  Identities=16%  Similarity=0.165  Sum_probs=171.5

Q ss_pred             ChhHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHhc-------c------------------CC---CEEEEe
Q 013079           98 NPTVLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQLC-------S------------------SG---GHVVAA  147 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l~-------~------------------~g---d~Vi~~  147 (450)
                      .+..+++++.|+++.  +.+.++||+|   |++|+..+++.+.       +                  +|   ++||+.
T Consensus       109 ~~l~~~la~~l~~~~~~~~~~v~f~~s---GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~  185 (472)
T 1ohv_A          109 ENFVEKLRESLLSVAPKGMSQLITMAC---GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF  185 (472)
T ss_dssp             TTHHHHHHHTGGGGCCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCcCEEEEeCC---chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEE
Confidence            344555565566665  5678999999   9999999998763       1                  35   899999


Q ss_pred             CCCchhHHHHHHHhCCC----ccCe-----eEEEeCC-----------------CCHHHHHHhhhcC------CceEEEE
Q 013079          148 RTLYGGTHALLTHFFPR----ACNI-----TTTFVDI-----------------SDHEMVNSAIVQG------RTKVLYF  195 (450)
Q Consensus       148 ~~~y~~~~~~~~~~~~~----~~g~-----~v~~v~~-----------------~d~~~l~~ai~~~------~t~lv~i  195 (450)
                      ++.|++...........    ..+.     ....++.                 .|+++|++++ ++      ++++|++
T Consensus       186 ~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~~~~~~~viv  264 (472)
T 1ohv_A          186 MGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLI-VKYRKKKKTVAGIIV  264 (472)
T ss_dssp             TTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEEEEE
T ss_pred             CCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHH-HhcCCCCCCEEEEEE
Confidence            99998855433211110    0011     1111110                 1578888888 44      7999999


Q ss_pred             ecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCCC----CeEEEeCCCCcc-ccCccceEEE
Q 013079          196 ESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-----PARLG----ADVVVHSISKFI-SGGADIIAGA  261 (450)
Q Consensus       196 ~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~g----~di~~~S~sK~~-g~~g~~igG~  261 (450)
                      ++++|++|.+.+    +++|.++|+++|+++|+||+|+++...     ...++    +|++  |++|.+ +      ||+
T Consensus       265 e~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~  336 (472)
T 1ohv_A          265 EPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGF  336 (472)
T ss_dssp             CSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEE
T ss_pred             cCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCc
Confidence            999999999887    999999999999999999999654332     11224    6776  577994 4      367


Q ss_pred             EEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCC-CCCCchhHH
Q 013079          262 VCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPG-LEDHPHHEL  340 (450)
Q Consensus       262 l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~-~~~~p~~~l  340 (450)
                      ++ ++++. .+..... ..+..++.+.+.++..++..+.. ....++..++++++.+.|+++...  +|. +.       
T Consensus       337 ~~-~~~~~-~~~~~~~-~~T~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~l~~~--~~~~v~-------  403 (472)
T 1ohv_A          337 FH-KEEFR-PNAPYRI-FNTWLGDPSKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQAR--YPQFIS-------  403 (472)
T ss_dssp             EE-CGGGS-CSSSSSS-CCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH--CTTTCE-------
T ss_pred             cC-chhhc-ccccccc-cCccCccHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhh--CCCcEE-------
Confidence            66 55542 1111111 11122333333333333322111 123455677777888877654110  111 00       


Q ss_pred             HHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEE
Q 013079          341 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRM  420 (450)
Q Consensus       341 ~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRi  420 (450)
                            ...+.|.+++|++++......+...|...   | +.+..+                         |  .+.|||
T Consensus       404 ------~~~~~g~~~~~~~~~~~~~~~~~~~l~~~---G-v~~~~~-------------------------g--~~~iRi  446 (472)
T 1ohv_A          404 ------RVRGRGTFCSFDTPDESIRNKLISIARNK---G-VMLGGC-------------------------G--DKSIRF  446 (472)
T ss_dssp             ------EEEEETTEEEEECSSHHHHHHHHHHHHHT---T-EECEEE-------------------------T--TTEEEE
T ss_pred             ------eecCCceEEEEEeCChhHHHHHHHHHHHC---C-eEEecC-------------------------C--CCEEEE
Confidence                  01145779999987644466777777542   2 222211                         1  368999


Q ss_pred             EeCCCCCHHHHHHHHHHHHHHhh
Q 013079          421 SVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       421 S~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      |++ ...+++.++.+.++|.++.
T Consensus       447 ~~~-~~~t~e~i~~~~~~l~~~l  468 (472)
T 1ohv_A          447 RPT-LVFRDHHAHLFLNIFSDIL  468 (472)
T ss_dssp             CCC-TTCCHHHHHHHHHHHHHHH
T ss_pred             ECC-CCCCHHHHHHHHHHHHHHH
Confidence            999 8777887888777776654

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.73  E-value=7.6e-17  Score=170.71  Aligned_cols=213  Identities=12%  Similarity=0.126  Sum_probs=148.5

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHH-HHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAG-MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~g-t~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ....+.++++.+|+++|++.++|+++   | +.||.+++.+++++||+|++++++|.++...+.     +.|.++++++.
T Consensus       193 ~~g~i~eaE~~lA~~fGa~~a~~v~n---Gts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~-----lsGa~pv~v~~  264 (715)
T 3n75_A          193 HSGPHKEAEQYIARVFNADRSYMVTN---GTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMM-----MSDVTPIYFRP  264 (715)
T ss_dssp             TBTHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHH-----HSCCEEEEECC
T ss_pred             CcHHHHHHHHHHHHHhCCCCceEECc---HHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHH-----HcCCEEEEEec
Confidence            44578999999999999999877666   6 699999999999999999999999999988764     36888888874


Q ss_pred             C---------------CHHHHHHhhhc-CCce---EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCC-CCCC--
Q 013079          176 S---------------DHEMVNSAIVQ-GRTK---VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS-PLVL--  233 (450)
Q Consensus       176 ~---------------d~~~l~~ai~~-~~t~---lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~-~~~~--  233 (450)
                      .               |+++|++++.. ++++   +|++++| |++|.+.|+++|+++|+.++  +++|++|+ ++.+  
T Consensus       265 ~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~  341 (715)
T 3n75_A          265 TRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSP  341 (715)
T ss_dssp             CBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSG
T ss_pred             cccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCC
Confidence            2               79999999943 3445   8899999 99999999999999998764  79999983 3322  


Q ss_pred             -----CccCCC--CeEE---EeCCCCccccCccceEEEEEcCHHH-HHHHHHHhhhhhhccCCCchHHHHHH-HHccCC-
Q 013079          234 -----SPARLG--ADVV---VHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPTMNPKVAFE-LSERIP-  300 (450)
Q Consensus       234 -----~~~~~g--~di~---~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~~~-  300 (450)
                           +....+  +|++   ++|+||.+++..  .||++..+.++ ...+..... ....+.+.....++.. +.+.++ 
T Consensus       342 ~~~~~~al~~g~~aD~vii~~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~-~~~STSpsy~~~AsldaA~~~~~~  418 (715)
T 3n75_A          342 IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYM-MHTTTSPHYGIVASTETAAAMMKG  418 (715)
T ss_dssp             GGTTSSTTSSSCCTTCEEEEEECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHH-HTSCSSCCHHHHHHHHHHHHHHSH
T ss_pred             ccccccccccCcCCCEEEEEEecccccccCCC--CeeEEEeCchhhHHHHHHHHH-hhcCCCchHHHHHHHHHHHHHHHh
Confidence                 222223  5655   999999998642  24777654432 223332222 1112222222222222 222222 


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHhC
Q 013079          301 -HLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       301 -~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                       .-.++.++..++.+++++.|+++
T Consensus       419 ~~g~~~~~~l~~~a~~~r~~L~~i  442 (715)
T 3n75_A          419 NAGKRLINGSIERAIKFRKEIKRL  442 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHh
Confidence             23445667778888888888765

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.68  E-value=3e-16  Score=158.44  Aligned_cols=240  Identities=16%  Similarity=0.143  Sum_probs=157.7

Q ss_pred             ChhHHHHHHHHHHHh-CCCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHH-HhCCCccCeeEEEe
Q 013079           98 NPTVLNLSRQMAALE-GTEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLT-HFFPRACNITTTFV  173 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~-g~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~-~~~~~~~g~~v~~v  173 (450)
                      ++...++.+.|++.+ +.+.++|++|   |+||+..+++...  ...++|+....+|++...... ...+.........+
T Consensus       126 ~~~~~~lae~l~~~~p~~~~v~f~~S---GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~  202 (454)
T 4ao9_A          126 NLLEGRLARLICERFPQIEQLRFTNS---GTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL  202 (454)
T ss_dssp             ESSHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE
T ss_pred             cHHHHHHHHHHHHhCCCCCEEEEeCc---hHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC
Confidence            345567888888877 4578999999   9999999998653  234689999999987432210 00011112345566


Q ss_pred             CCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCC-CCC----CccCCCCeE
Q 013079          174 DISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSP-LVL----SPARLGADV  242 (450)
Q Consensus       174 ~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~-~~~----~~~~~g~di  242 (450)
                      +.+|++.+++.+++  +++.+|++|.+.+..|.+.|    +++|.++|++||+++|+||++++ ...    ....+..|+
T Consensus       203 p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi  282 (454)
T 4ao9_A          203 PYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDL  282 (454)
T ss_dssp             CTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSE
T ss_pred             CCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcE
Confidence            77899999998843  46889999999999999877    99999999999999999999942 111    112234688


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh---hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ---GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARR  319 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~---~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~  319 (450)
                      ++  ++|.+|+ |.++ |++++++++++.+.....   +..+..|+.+...++...+..++. +...++..++.++|.+.
T Consensus       283 ~t--~gK~lgg-G~Pi-ga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~-~~~~~~~~~~g~~l~~~  357 (454)
T 4ao9_A          283 TT--LGKYIGG-GMSF-GAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT-PEAAGALAERGEALRAR  357 (454)
T ss_dssp             EE--EEGGGGT-TSSC-EEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred             EE--eccccCC-CCcc-eeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHH
Confidence            87  8999984 6788 888899888876643211   112234444444444444444443 33445556666677777


Q ss_pred             HHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          320 MKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       320 L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      |+++..+...+.               +.+|.|.++.++|.
T Consensus       358 L~~l~~~~~~~~---------------~vrg~G~m~gi~f~  383 (454)
T 4ao9_A          358 LNALCANEGVAM---------------QFTGIGSLMNAHFV  383 (454)
T ss_dssp             HHHHHHHHTBSC---------------EEEEETTEEEEESC
T ss_pred             HHHHHhhCCCCE---------------EEeeeceEEEEEEe
Confidence            655311100111               12367889999874

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.66  E-value=1e-14  Score=147.75  Aligned_cols=255  Identities=16%  Similarity=0.160  Sum_probs=153.9

Q ss_pred             CChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCC------C-
Q 013079           97 FNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFP------R-  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~------~-  164 (450)
                      .++...++.++|+++..   .+.++|++|   |+||+..|++...  ...++|+.....||+..........      . 
T Consensus       105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~s---GsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~  181 (456)
T 4atq_A          105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNS---GAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTN  181 (456)
T ss_dssp             CCHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTT
T ss_pred             CcHHHHHHHHHHHHhCCCCCCcEEEEeCC---hHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccC
Confidence            35566778889999875   356899999   9999999997542  2346899999999885432211100      0 


Q ss_pred             --ccCeeEEEeCCC-----------CHHHHHH-------hhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCC
Q 013079          165 --ACNITTTFVDIS-----------DHEMVNS-------AIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGV  220 (450)
Q Consensus       165 --~~g~~v~~v~~~-----------d~~~l~~-------ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi  220 (450)
                        .....+..++..           +.+.+++       .+..+++.+|++|.++...|.+.+    +++|.++|++||+
T Consensus       182 ~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gi  261 (456)
T 4atq_A          182 FGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGI  261 (456)
T ss_dssp             SCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC
T ss_pred             CCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCC
Confidence              011234444432           2333322       222346889999999998898854    9999999999999


Q ss_pred             EEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHH
Q 013079          221 TVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF  293 (450)
Q Consensus       221 ~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~  293 (450)
                      ++|+||+++++..       ....+..|+++  ++|.+| .|.++ |++++++++++.+..... ..++.|+.+...++.
T Consensus       262 llI~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lg-gg~P~-~av~~~~~i~~~~~~~~~-~~Tf~gnpla~aaal  336 (456)
T 4atq_A          262 VFIADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIA-GGLPL-SAITGRADLLDAVHPGGL-GGTYGGNPVACAAAL  336 (456)
T ss_dssp             EEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGG-TTSSC-EEEEEEHHHHTTSCTTSS-CCSSSSCHHHHHHHH
T ss_pred             ceEecccccccCCccccccccccCCCCchhh--hhhccc-CcCCc-eeeEecHHHHhcccccCC-CCCCCCChHHHHhhH
Confidence            9999999966531       12223579988  789988 56788 888888888776643322 223444444444444


Q ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-------CH
Q 013079          294 ELSERIPHLGLRMKEHCHRALIFARRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-------TE  362 (450)
Q Consensus       294 ~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-------~~  362 (450)
                      ..+..++. +...++..+..+++.+.|+++    +.. ..|.             ..+.+|.|.++.|++.       ..
T Consensus       337 a~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~-~~~~-------------v~~VRG~Gl~~giel~~~~~~~~~~  401 (456)
T 4atq_A          337 AAIDTMEQ-HDLNGRARHIEELALGKLRELAAELSAG-GGSV-------------VGDIRGRGAMLAIELVQPGSKEPNA  401 (456)
T ss_dssp             HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHCC------C-------------EEEEEEETTEEEEEEBCTTSCCBCH
T ss_pred             HHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhcccc-cCCc-------------eEEeeecceEEEEEEecCCCCCcCH
Confidence            43332211 012233334444555555432    210 0010             0133478999999984       33


Q ss_pred             HHHHHHHHHhhc
Q 013079          363 EKANRLMNYLQN  374 (450)
Q Consensus       363 ~~~~~~~~~l~~  374 (450)
                      +.+..+...+..
T Consensus       402 ~~~~~v~~~~~~  413 (456)
T 4atq_A          402 ELTKAVAAACLK  413 (456)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            445566666654

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.65  E-value=2.9e-14  Score=145.01  Aligned_cols=290  Identities=15%  Similarity=0.209  Sum_probs=176.1

Q ss_pred             CChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc-------cCC-CEEEEeCCCchhHHHH-HH------
Q 013079           97 FNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC-------SSG-GHVVAARTLYGGTHAL-LT------  159 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~-------~~g-d~Vi~~~~~y~~~~~~-~~------  159 (450)
                      .++...+|.++|+++..  .+.++|++|   |+||+..|++...       +++ .+||.....||+.... +.      
T Consensus       109 ~~~~~~~lAe~L~~~~p~~~~~v~f~~s---GsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~  185 (473)
T 4e3q_A          109 MSDQTVMLSEKLVEVSPFDSGRVFYTNS---GSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY  185 (473)
T ss_dssp             EEHHHHHHHHHHHHHSSCSSCEEEEESS---HHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred             cCHHHHHHHHHHHhhCCCCccEEEEeCc---hHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence            35667788899999885  468999999   9999999998542       122 4788888898874322 21      


Q ss_pred             --HhCCCccCeeEEEeCCC------------------CHHHHHHhhh---cCCceEEEEecCCCCcccccC----HHHHH
Q 013079          160 --HFFPRACNITTTFVDIS------------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELS  212 (450)
Q Consensus       160 --~~~~~~~g~~v~~v~~~------------------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~I~  212 (450)
                        .+.....+  ...++..                  ..+++++.+.   .+++.+|++|.++...|.+.+    +++|.
T Consensus       186 ~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr  263 (473)
T 4e3q_A          186 NSVFGLPLPG--FVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAIL  263 (473)
T ss_dssp             GGGGTCSCTT--EEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHH
T ss_pred             ccccCCCCCc--ccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHH
Confidence              01111112  2222221                  1234444442   246789999999998898854    99999


Q ss_pred             HHHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh------hh
Q 013079          213 RLAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ------GA  279 (450)
Q Consensus       213 ~la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~------~~  279 (450)
                      ++|+++|+++|+||+++++...       ......|+++  ++|.+++.+.++ |+++.++++.+.+.....      +.
T Consensus       264 ~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~~Pl-~av~~~~~i~~~~~~~~~~~~~~~hg  340 (473)
T 4e3q_A          264 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGFFPM-GAVILGPELSKRLETAIEAIEEFPHG  340 (473)
T ss_dssp             HHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHhcccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCCCCc-ccccccHHHHHHhccccccccccccC
Confidence            9999999999999999776421       1223578888  899999766888 888889899887754321      12


Q ss_pred             hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          280 LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       280 ~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                      .++.|+.+...++...+..++. +...++..+..++|.+.|+++..   .|.+.             +.+|.|.++.+++
T Consensus       341 ~T~~Gnpla~Aaala~L~~i~~-~~l~~~~~~~g~~l~~~L~~l~~---~~~v~-------------~vRG~Gl~~giel  403 (473)
T 4e3q_A          341 FTASGHPVGCAIALKAIDVVMN-EGLAENVRRLAPRFEERLKHIAE---RPNIG-------------EYRGIGFMWALEA  403 (473)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHTT---STTEE-------------EEEEETTEEEEEE
T ss_pred             CCCCCCcchhhhhhhhhhhhcc-ccHHHHHHHHHHHHHHHHHHHhc---CCCee-------------EEeecceEEEEEE
Confidence            2233443333333333322211 11233445556667777765421   11110             2337888999997


Q ss_pred             CC-----------HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCC---C
Q 013079          360 ET-----------EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGY---L  425 (450)
Q Consensus       360 ~~-----------~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~---~  425 (450)
                      ..           .....++...+..   .|++....|                             +.|||+..+   .
T Consensus       404 v~~~~~~~~~~~~~~~~~~~~~~~~~---~Gll~~~~g-----------------------------~~i~l~PPL~it~  451 (473)
T 4e3q_A          404 VKDKASKTPFDGNLSVSERIANTCTD---LGLICRPLG-----------------------------QSVVLCPPFILTE  451 (473)
T ss_dssp             CSBTTTTBCCCGGGCHHHHHHHHHHH---TTEECEEET-----------------------------TEEEECCCTTCCH
T ss_pred             ecCccccccccccHHHHHHHHHHHHH---CCcEEEecC-----------------------------CEEEEeCCCCCCH
Confidence            41           1124455555543   233322222                             346665441   3


Q ss_pred             CCHHHHHHHHHHHHHHhh
Q 013079          426 GTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       426 ~~~~~~i~~l~~al~~~~  443 (450)
                      +++++.++.|.++|+++.
T Consensus       452 ~eid~~~~~l~~al~~v~  469 (473)
T 4e3q_A          452 AQMDEMFDKLEKALDKVF  469 (473)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            567777788888887764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.65  E-value=4.7e-15  Score=146.73  Aligned_cols=193  Identities=11%  Similarity=0.105  Sum_probs=135.1

Q ss_pred             eEEEecChHHHHHHHHHHHHHhccC----CCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC--------CHHHHHH
Q 013079          116 AAYCTASDKAGMSAISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--------DHEMVNS  183 (450)
Q Consensus       116 ~~~~tsg~~~gt~ai~~al~~l~~~----gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~--------d~~~l~~  183 (450)
                      ..++++|   +|.++.+++.+.+++    +|.||+++..|.++...+.     +.|.+++++++.        |++++++
T Consensus       136 ~~flVnG---sTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAli-----L~Gl~Pv~V~p~~d~~~~~id~e~le~  207 (501)
T 3hl2_A          136 NCFVVPM---ATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI-----TAGFEPVVIENVLEGDELRTDLKAVEA  207 (501)
T ss_dssp             EEEEESS---CHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECEEEETTEEEECHHHHHH
T ss_pred             cEEEECc---HHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHH-----HcCCeEEEEeeeecccccCCCHHHHHH
Confidence            4688999   998888888777764    4999999999999998885     478888888752        8999999


Q ss_pred             hhhcC--Cce-EEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCC------CccCCC-CeEEEeCCCCccc
Q 013079          184 AIVQG--RTK-VLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL------SPARLG-ADVVVHSISKFIS  252 (450)
Q Consensus       184 ai~~~--~t~-lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~------~~~~~g-~di~~~S~sK~~g  252 (450)
                      +|++.  +.. +|+.++++|..+.+.|+++|+++|++||+++|||++| .++.+      +..++| +|+++.|.||.+-
T Consensus       208 aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~ll  287 (501)
T 3hl2_A          208 KVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFM  287 (501)
T ss_dssp             HHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHC
T ss_pred             HHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccce
Confidence            99432  233 3444445555567799999999999999999999999 44322      122347 9999999999987


Q ss_pred             cCccceEEEE--EcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          253 GGADIIAGAV--CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       253 ~~g~~igG~l--~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      .+   +||.+  ..++++++.+.....+.  .  +.......++.+.  +.+.+.+.+++..++.++|.+.|+++
T Consensus       288 vp---IGG~ii~~~d~e~l~~~~~~yPGr--~--S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~l  355 (501)
T 3hl2_A          288 VP---VGGAIIAGFNDSFIQEISKMYPGR--A--SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKL  355 (501)
T ss_dssp             CC---SSCEEEEESCHHHHHHHHHTSCSC--B--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ee---cCceEEEeCCHHHHHHHHHhCCCC--C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65   34544  34667777764432211  1  1112222333332  44556677777888888888888774

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.62  E-value=2.2e-14  Score=143.61  Aligned_cols=211  Identities=11%  Similarity=0.107  Sum_probs=140.4

Q ss_pred             hHHHHHHHHHHHhCCCe---EEEecChHHHHHHHHHHHHHhccC----CCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          100 TVLNLSRQMAALEGTEA---AYCTASDKAGMSAISSVLMQLCSS----GGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       100 ~~~~l~~~iA~l~g~~~---~~~tsg~~~gt~ai~~al~~l~~~----gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..+.+...+.+++|...   .++++|   +|.++++++.+.+++    ++.|++++..|.++...+.     +.|+..++
T Consensus        99 ~e~~~~~~~~~~lGlp~~~~~~lV~G---aT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~-----l~Gl~p~~  170 (450)
T 3bc8_A           99 ITNSLVLNVIKLAGVHSVASCFVVPM---ATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV-----TAGFEPVV  170 (450)
T ss_dssp             HHHHHHHHHHHHHTCTTCCEEEEESS---CHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCceEEEECC---HHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHH-----HcCCeeEE
Confidence            34567777777778543   489999   886666666555554    7899999999999998885     47888888


Q ss_pred             eCC---C-----CHHHHHHhhhcC--CceEEEEecC-CCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCC------
Q 013079          173 VDI---S-----DHEMVNSAIVQG--RTKVLYFESI-SNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLS------  234 (450)
Q Consensus       173 v~~---~-----d~~~l~~ai~~~--~t~lv~i~~~-~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~------  234 (450)
                      +++   +     |++.|+++|...  +..++++.+| ++.+|.+.|+++|+++|++||+++|||++|+. +.+.      
T Consensus       171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~  250 (450)
T 3bc8_A          171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ  250 (450)
T ss_dssp             ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHH
T ss_pred             EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHH
Confidence            765   2     899999999432  2344444444 45567899999999999999999999999943 3221      


Q ss_pred             ccCC-CCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHH
Q 013079          235 PARL-GADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHC  310 (450)
Q Consensus       235 ~~~~-g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~  310 (450)
                      ..+. ++|+++.|.||++..+-.  ++++. .+++.++.+.....+    ...+......+..+.  +.+.+.+.+++..
T Consensus       251 a~~~~~AD~~v~S~HK~l~a~~~--~~~l~~rd~~~~~~~~~~~~g----~~s~SpsL~l~~~l~~~G~~g~~~~i~~~~  324 (450)
T 3bc8_A          251 GARVGRIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYPG----RASASPSLDVLITLLSLGCSGYRKLLKERK  324 (450)
T ss_dssp             HHHHSCCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSCS----CBCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCCCEEEECCccCCCchhc--cEEEEecCHHHHHHHHHHhhc----CCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122 699999999999986632  35554 566776666443210    111111223333222  2233445555567


Q ss_pred             HHHHHHHHHHHhCC
Q 013079          311 HRALIFARRMKKLG  324 (450)
Q Consensus       311 ~~~~~l~~~L~~~~  324 (450)
                      ++++++.+.|++++
T Consensus       325 ~~a~~l~~~l~~~~  338 (450)
T 3bc8_A          325 EMFVYLSTQLKKLA  338 (450)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhH
Confidence            77788888886643

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.57  E-value=1.1e-13  Score=136.43  Aligned_cols=283  Identities=14%  Similarity=0.152  Sum_probs=170.9

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCCCCCCCccccC--CCChhHHHH----HHHHHHHhCCCeE-----EEecChHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSR--HFNPTVLNL----SRQMAALEGTEAA-----YCTASDKAGMS  128 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r--~~~~~~~~l----~~~iA~l~g~~~~-----~~tsg~~~gt~  128 (450)
                      .+-+|-.++.+.+ +++-..+...|.-   +|.--|  .+...++++    .++..+++|++.+     +=.-|   |+.
T Consensus        58 eLIASEN~~S~aV~~a~gS~ltnKYaE---GyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~S---Gs~  131 (490)
T 3ou5_A           58 ELIASENFCSRAALEALGSCLNNKYSE---GYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYS---GSP  131 (490)
T ss_dssp             ECCTTCCCCCHHHHHHHTSGGGTCCCC---C----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS---HHH
T ss_pred             eEecCCCcCCHHHHHHhcCcccccccC---CCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCC---HHH
Confidence            4556777766554 5555556555422   222112  123444433    3456678898753     44457   999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCchhHHHHHH--HhCC-CccCe--eEEEeCCC------CHHHHHHhhhcCCceEEEEec
Q 013079          129 AISSVLMQLCSSGGHVVAARTLYGGTHALLT--HFFP-RACNI--TTTFVDIS------DHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       129 ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~--~~~~-~~~g~--~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      ||.+++.++++|||+|+..+..+++....-.  ...+ ...|.  ++..+.++      |.|++++.....++++|++-.
T Consensus       132 AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~  211 (490)
T 3ou5_A          132 ANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT  211 (490)
T ss_dssp             HHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECC
Confidence            9999999999999999999988877654320  0000 00121  12222111      899998877567899999865


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH-----
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-----  266 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-----  266 (450)
                      ..+|  ...|.+++.++|++.|.++++|.++      ++...+|... +|+++.|.||.+.||-   ||+|+.++     
T Consensus       212 SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~~  285 (490)
T 3ou5_A          212 SAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAV  285 (490)
T ss_dssp             SSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEEE
T ss_pred             ccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ceEEeccccccccCCC---ceEEEeccccccc
Confidence            4443  5689999999999999999999997      4445678776 8999999999998764   68887654     


Q ss_pred             ----------HHHHHHHHHhhhhhhccCCCchHHHHHHH--Hc-cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCC
Q 013079          267 ----------NLVNSMMDLHQGALMLLGPTMNPKVAFEL--SE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE  333 (450)
Q Consensus       267 ----------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~--~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~  333 (450)
                                ++.+++...--.. ...|+.+...+|.+.  .. ....+....++..++++.|++.|.+.|+++..-+..
T Consensus       286 ~~k~~~~~~~~~~kkin~aVFPg-~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTd  364 (490)
T 3ou5_A          286 DPKTGREIPYTFEDRINFAVFPS-LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTD  364 (490)
T ss_dssp             CC--CCEEECCCHHHHHHHHTTT-TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred             cccccchhHHHHHHHHHhhcCcc-ccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCC
Confidence                      3555665432211 123344333333322  11 223456677778999999999999999987654422


Q ss_pred             CCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013079          334 DHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN  374 (450)
Q Consensus       334 ~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~~~~~l~~  374 (450)
                      +                  .++.+++.    +...++..++...+
T Consensus       365 n------------------HlvLvDl~~~g~tG~~ae~~Le~agI  391 (490)
T 3ou5_A          365 N------------------HLVLVDLRPKGLDGARAERVLELVSI  391 (490)
T ss_dssp             S------------------SEEEEECGGGTCCHHHHHHHHHHTTE
T ss_pred             c------------------eEEEEeccccCCCHHHHHHHHHHcCc
Confidence            2                  27888875    34456666666553

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.51  E-value=2.4e-13  Score=147.31  Aligned_cols=173  Identities=14%  Similarity=0.167  Sum_probs=118.0

Q ss_pred             CCChhHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhc-----cC------------CCEEEEeCCCchhHH
Q 013079           96 HFNPTVLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLC-----SS------------GGHVVAARTLYGGTH  155 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~-----~~------------gd~Vi~~~~~y~~~~  155 (450)
                      ..++...+|.++|+++.+   .+.++|++|   |++|+..|++...     ..            ..+||.....||+..
T Consensus       421 ~~~~~~~~Lae~L~~~~p~~~l~~vff~~S---GSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T  497 (831)
T 4a0g_A          421 NVYEPALKCAELLLDGVGKGWASRVYFSDN---GSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDT  497 (831)
T ss_dssp             EECHHHHHHHHHHHHTTTTTTCCEEEEESS---HHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSS
T ss_pred             cCCHHHHHHHHHHHHhCCCCCCCEEEECCC---hhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCc
Confidence            346777899999999987   468999999   9999999998652     11            236888888887643


Q ss_pred             -HHHHHhCC---------Ccc-Cee---------------EEEeCC------------CC------------------HH
Q 013079          156 -ALLTHFFP---------RAC-NIT---------------TTFVDI------------SD------------------HE  179 (450)
Q Consensus       156 -~~~~~~~~---------~~~-g~~---------------v~~v~~------------~d------------------~~  179 (450)
                       ..+.....         .+. +..               ....+.            .+                  .+
T Consensus       498 ~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  577 (831)
T 4a0g_A          498 LGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSA  577 (831)
T ss_dssp             HHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHH
T ss_pred             eeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHH
Confidence             22321000         000 100               011110            12                  25


Q ss_pred             HHHHhhh-------cCCceEEEEecC-CCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cCCCC
Q 013079          180 MVNSAIV-------QGRTKVLYFESI-SNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLSP-------ARLGA  240 (450)
Q Consensus       180 ~l~~ai~-------~~~t~lv~i~~~-~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~~-------~~~g~  240 (450)
                      .|++.+.       .+++++|++|++ ++..|.+.+    +++|.++|++||+++|+||+++++....       ..+..
T Consensus       578 ~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P  657 (831)
T 4a0g_A          578 YLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKP  657 (831)
T ss_dssp             HHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCC
T ss_pred             HHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCC
Confidence            6777663       245789999997 898888864    8999999999999999999996653211       12246


Q ss_pred             eEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                      |+++  ++|.+++...++ |++++++++++.+..
T Consensus       658 Diit--lsK~L~gG~~Pl-gav~~~~~i~~~~~~  688 (831)
T 4a0g_A          658 DIAC--FAKLLTGGMVPL-AVTLATDAVFDSFSG  688 (831)
T ss_dssp             SEEE--ECGGGGTTSSCC-EEEEECHHHHHTTCS
T ss_pred             cEEE--EecccccCccCc-EEEEECHHHHHHHhc
Confidence            8775  999998633688 999999998887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d1y4ia1	397	c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Ci	3e-64
d2ctza1	421	c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydry	1e-62
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	4e-62
d1pffa_	331	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	5e-55
d1e5ea_	394	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichom	6e-53
d1qgna_	398	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {C	7e-51
d1ibja_	380	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale	7e-50
d1n8pa_	393	c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Ba	5e-49
d1cs1a_	384	c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {E	4e-47
d1cl1a_	391	c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Esche	1e-35
d1b5pa_	382	c.67.1.1 (A:) Aspartate aminotransferase, AAT {The	1e-11
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	8e-06
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	5e-05
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	6e-05
d2hoxa1	425	c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ	2e-04
d1j32a_	388	c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho	5e-04

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} Length = 397

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

 Score =  210 bits (535), Expect = 3e-64
 Identities = 137/392 (34%), Positives = 210/392 (53%), Gaps = 23/392 (5%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             G ++  I  ++TF     E     FA E       +IY+R  NPT   L +++A LE 
Sbjct: 22  STGALSTPIFQTSTFVFDSAEQGAARFALEESG----YIYTRLGNPTTDALEKKLAVLER 77

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            EA   TAS   G+SAI++ L+ LC  G H+V+A  +YG THA L+H  P+   I   FV
Sbjct: 78  GEAGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFV 133

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV 232
           D    E + +A+ +  TKV+Y E+ +NPTL++ +I  ++ +AH +G  +VVDNTF SP  
Sbjct: 134 DAGKPEEIRAAM-RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC 192

Query: 233 LSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             P +LGAD+VVHS++K+I+G  D+I G + G    ++       G   + G  M+P  A
Sbjct: 193 QQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQAR--FVGLKDITGGCMSPFNA 250

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYG 350
           +     +  LG+RM+ HC  AL  AR ++      +V YPGL  HP +   +    +   
Sbjct: 251 WLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQY---ELGQRQMSL 307

Query: 351 FGGLLCLD-METEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKA 409
            GG++  +     E   R++N ++       +AVSLG  ETL+    S T S +  EE+ 
Sbjct: 308 PGGIISFEIAGGLEAGRRMINSVE----LCLLAVSLGDTETLIQHPASMTHSPVAPEERL 363

Query: 410 LAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441
            AGI+ GL+R+SVG L   +   +  E A+ +
Sbjct: 364 KAGITDGLIRLSVG-LEDPEDIINDLEHAIRK 394

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} Length = 421

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

 Score =  206 bits (525), Expect = 1e-62
 Identities = 114/420 (27%), Positives = 183/420 (43%), Gaps = 48/420 (11%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
                 + I  + ++    PE    +FA +        IYSR  NPTV  L +++AALEG
Sbjct: 17  TTLSRQVPIYPTTSYVFKSPEHAANLFALK----EFGNIYSRIMNPTVDVLEKRLAALEG 72

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
            +AA  TAS   G +A    L  L  +G ++V+   LYGGT         R         
Sbjct: 73  GKAALATAS---GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFS--PL 231
                E   +     +T+  + ESI NP L + ++  L++ A +KGV ++VDNTF     
Sbjct: 130 REERPEEFLALT-DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGY 188

Query: 232 VLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS-------------------- 271
           +L P   GA +V HS++K++ G   +IAGA+    N                        
Sbjct: 189 LLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLT 248

Query: 272 --------MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 323
                   ++      L   G  + P  A+ +   +  L LR + H    L  A  + + 
Sbjct: 249 EAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQ 308

Query: 324 GL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGF 380
                V YPGL  HPHH+  +         G +L   ++   E A R ++ L+  +    
Sbjct: 309 PQVAWVNYPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLIS---- 362

Query: 381 MAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS 440
              ++G   TL     S+T S+L+ EE+A AG+S  +VR+SVG L  ++   ++ ++AL+
Sbjct: 363 HLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVG-LEHVEDLKAELKEALA 421

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score =  204 bits (520), Expect = 4e-62
 Identities = 142/400 (35%), Positives = 201/400 (50%), Gaps = 23/400 (5%)

Query: 44  ALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLN 103
           A+          G +   +  +ATFT    E     FAGE    +    YSR  NPT+  
Sbjct: 8   AIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNL 63

Query: 104 LSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP 163
           L  +MA+LEG EA    AS   GM AI+S L  L   G  V+   TLYG T A L H   
Sbjct: 64  LEARMASLEGGEAGLALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFL-HHGI 119

Query: 164 RACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 223
               +    VD++D + + +A+    T+V+YFES +NP + +A+I  ++++A   G TVV
Sbjct: 120 GEFGVKLRHVDMADLQALEAAM-TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVV 178

Query: 224 VDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 282
           VDNT+ +P +  P  LGAD+VVHS +K++SG  DI AG V G   LV+ +    QG   +
Sbjct: 179 VDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIR--LQGLKDM 236

Query: 283 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKK--LGLKVLYPGLEDHPHHEL 340
            G  ++P  A  L   I  L LRM  HC  A + A  + +      + YPGL   P +  
Sbjct: 237 TGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQY-- 294

Query: 341 LKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 399
                 +    GG++  +++       R MN LQ ++     AVSLG  E+L     S T
Sbjct: 295 -TLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMT 349

Query: 400 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
            S    EE+A  GIS GLVR+SVG L  +D   +  ++AL
Sbjct: 350 HSSYTPEERAHYGISEGLVRLSVG-LEDIDDLLADVQQAL 388

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} Length = 331

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

 Score =  183 bits (466), Expect = 5e-55
 Identities = 97/339 (28%), Positives = 161/339 (47%), Gaps = 17/339 (5%)

Query: 104 LSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP 163
           L  ++A LE  EA   TAS   GM AI++ +     +G H+++   LYG THAL  H   
Sbjct: 3   LEGKIAKLEHAEACAATAS---GMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLR 59

Query: 164 RACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 223
           +   +   F+D++    +   +      V +    +     +     + +    K + V+
Sbjct: 60  K-FGVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVI 118

Query: 224 VDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 282
           VDNTF SP++ +P  LG D+VVHS +K+I+G  D++  A    +          QG   +
Sbjct: 119 VDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVV--AGLVCSRADIIAKVKSQGIKDI 176

Query: 283 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMK--KLGLKVLYPGLEDHPHHEL 340
            G  ++P  A+ ++     L +R+K     A   A  +   K   KV YPGL DHP HE+
Sbjct: 177 TGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEI 236

Query: 341 LKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS 400
            K        FG ++  D++  EKA ++++          +AVSLG  E+L+    S T 
Sbjct: 237 AKKQ---MKMFGSMIAFDVDGLEKAKKVLDNC----HVVSLAVSLGGPESLIQHPASMTH 289

Query: 401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL 439
           + +  EE+  AG++  L+R+SVG    +       ++AL
Sbjct: 290 AGVPKEEREAAGLTDNLIRLSVG-CENVQDIIDDLKQAL 327

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} Length = 394

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

 Score =  180 bits (457), Expect = 6e-53
 Identities = 125/408 (30%), Positives = 204/408 (50%), Gaps = 24/408 (5%)

Query: 40  DPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNP 99
            PA A   A  +  + G     I  ++TF     +     FAG+       +IY+R  NP
Sbjct: 4   TPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNP 59

Query: 100 TVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLT 159
           TV NL  ++A LE TEA   T+S   GM AI++ ++ +  +G H+++   LYG THAL  
Sbjct: 60  TVSNLEGKIAFLEKTEACVATSS---GMGAIAATVLTILKAGDHLISDECLYGCTHALFE 116

Query: 160 HFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN-IPELSRLAHDK 218
           H   +              E+     ++  TK++YFE+ +NPTL + +           +
Sbjct: 117 HALTKFGIQVDFINTAIPGEV--KKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQE 174

Query: 219 GVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 277
           GV V+ DNTF SP++ +P   G DVVVHS +K+I+G  D++AG +CG A+          
Sbjct: 175 GVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKAD--LLQQIRMV 232

Query: 278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDH 335
           G   + G  ++P  A+ ++  +  L +RMK     A+  A  +K      KV YPG EDH
Sbjct: 233 GIKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDH 292

Query: 336 PHHELLKSMANKEYGFGGLLCLDM-ETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSC 394
             H++      +   +G ++   +    E A +L++ L+       +AVSLG  E+L+  
Sbjct: 293 EGHDI---AKKQMRMYGSMITFILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQH 345

Query: 395 SGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
             S T + +  EE+  AGI+ G++R+SVG +   D+  + F++ L  +
Sbjct: 346 PASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADELIADFKQGLDAL 392

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 398

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  175 bits (443), Expect = 7e-51
 Identities = 110/391 (28%), Positives = 187/391 (47%), Gaps = 24/391 (6%)

Query: 55  HGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGT 114
              +   +  ++ +   +   +              F Y R+ NPT + L  +++ALEG 
Sbjct: 27  TDAITTPVVNTSAYFFNKTSELIDFKEKRRAS----FEYGRYGNPTTVVLEEKISALEGA 82

Query: 115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD 174
           E+    AS   GM A + +L+ L  +GGH+V     Y  T   +    P+   IT T +D
Sbjct: 83  ESTLLMAS---GMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVID 138

Query: 175 ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVL 233
            +D   +  A+ Q +  + + ES +NP L   +I  +S+L H+KG  V +D TF +PL  
Sbjct: 139 PADVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ 198

Query: 234 SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAF 293
               LGAD+V+HS +KF+ G  D++AG + GP  LV+ + +LH     +LG  +NP  A+
Sbjct: 199 KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH----HILGGALNPNAAY 254

Query: 294 ELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGF 351
            +   +  L LR+++    AL  A  ++       V YPGL+ HP H + K       GF
Sbjct: 255 LIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GF 311

Query: 352 GGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 410
           GG +  +++       + ++ L+      ++A S G  E+++      +  +L+  ++A 
Sbjct: 312 GGAVSFEVDGDLLTTAKFVDALK----IPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAK 367

Query: 411 AGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441
            GI   LVR S G +   D   +   +AL  
Sbjct: 368 YGIMDNLVRFSFG-VEDFDDLKADILQALDS 397

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 380

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  171 bits (435), Expect = 7e-50
 Identities = 106/400 (26%), Positives = 187/400 (46%), Gaps = 32/400 (8%)

Query: 45  LASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNL 104
           L +  ++F     ++  +  +ATF        ++  A E GP    + Y+R  NPT   L
Sbjct: 7   LVNLDNKFDPFDAMSTPLYQTATF--------KQPSAIENGP----YDYTRSGNPTRDAL 54

Query: 105 SRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR 164
              +A L+  + A+C  S   GM+A+S+ +  L  +G  +VA   +YGG+  LL+   PR
Sbjct: 55  ESLLAKLDKADRAFCFTS---GMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPR 110

Query: 165 ACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVV 224
           +  +          E+     +  +TK+++ ES +NP   +++I ++S +AH +G  V+V
Sbjct: 111 SGVVVKRVNTTKLDEVAA--AIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLV 168

Query: 225 DNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLL 283
           DN+  SP++  P  LGAD+V+HS +KFI+G +D++AG +      +   +   Q      
Sbjct: 169 DNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ---NSE 225

Query: 284 GPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELL 341
           G  + P   +     I  + LR+++    A   A  +       KV Y GL DHP H L 
Sbjct: 226 GSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLH 285

Query: 342 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSS 401
            S A               +   +  L+   + ++    +AVS G  ++L+S     + +
Sbjct: 286 FSQAKGAGSVF---SFITGSVALSKHLVETTKYFS----IAVSFGSVKSLISMPCFMSHA 338

Query: 402 ELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR 441
            + AE +   G++  LVR+S G +  +D   S  + A   
Sbjct: 339 SIPAEVREARGLTEDLVRISAG-IEDVDDLISDLDIAFKT 377

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  170 bits (430), Expect = 5e-49
 Identities = 98/405 (24%), Positives = 167/405 (41%), Gaps = 34/405 (8%)

Query: 48  ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQ 107
           A      HG V   I  S TF    P                 + YSR  NP   NL R 
Sbjct: 15  AGEHVDVHGSVIEPISLSTTFKQSSPANPI-----------GTYEYSRSQNPNRENLERA 63

Query: 108 MAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACN 167
           +AALE  +     +S   G +  +++L      G H V+   +YGGTH   T        
Sbjct: 64  VAALENAQYGLAFSS---GSATTATILQS-LPQGSHAVSIGDVYGGTHRYFTKVANAHGV 119

Query: 168 ITTTFVDISDHEMVNSAIVQGRTKVLYFESISNP----TLAVANIPELSRLAHDKGVTVV 223
            T+   D+ +       +++  TK+++ E+ +NP    T        + + A  + V +V
Sbjct: 120 ETSFTNDLLNDLP---QLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILV 176

Query: 224 VDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 282
           VDNTF SP + +P   GAD+VVHS +K+I+G +D++ G +      +   +   Q A+  
Sbjct: 177 VDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAI-- 234

Query: 283 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLK 342
            G   +P  A+     +  L LR+++    A   A  +      V+         H    
Sbjct: 235 -GAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYD 293

Query: 343 SMANKEYGF--GGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 399
            +  +      GG++   ++   E A++  +  +       +A SLG  E+L+      T
Sbjct: 294 VVLKQHRDALGGGMISFRIKGGAEAASKFASSTR----LFTLAESLGGIESLLEVPAVMT 349

Query: 400 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD 444
              +  E +  +G+   LVR+SVG +   D      ++AL +  +
Sbjct: 350 HGGIPKEAREASGVFDDLVRISVG-IEDTDDLLEDIKQALKQATN 393

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} Length = 384

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

 Score =  164 bits (416), Expect = 4e-47
 Identities = 110/404 (27%), Positives = 180/404 (44%), Gaps = 32/404 (7%)

Query: 44  ALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLN 103
           A+ S  ++  ++G V   I  S+T+        R               YSR  NPT   
Sbjct: 7   AVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRA------------HDYSRRGNPTRDV 54

Query: 104 LSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFP 163
           + R +A LEG   A  T +   GMSAI  V       G  +VA    YGG++ L      
Sbjct: 55  VQRALAELEGGAGAVLTNT---GMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAK 111

Query: 164 RACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVV 223
           R C          +  +   A +  + K++  ES SNP L V +I ++  LA + G   V
Sbjct: 112 RGCYRVLFVDQGDEQALR--AALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSV 169

Query: 224 VDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML 282
           VDNTF SP + +P  LGAD+V+HS +K+++G +D++AG V      V + +      + +
Sbjct: 170 VDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGV 229

Query: 283 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFAR--RMKKLGLKVLYPGLEDHPHHEL 340
            G   +   ++ L   +  L  RM+     A    +  + + L  K+ +P L ++  HE+
Sbjct: 230 TGGAFD---SYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEI 286

Query: 341 LKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSST 399
                    GFG +L  +++  E+   R +  L        +A SLG  E+L+S + + T
Sbjct: 287 AARQQK---GFGAMLSFELDGDEQTLRRFLGGLS----LFTLAESLGGVESLISHAATMT 339

Query: 400 SSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ 443
            + +  E +A AGIS  L+R+S G +   +   +  E       
Sbjct: 340 HAGMAPEARAAAGISETLLRISTG-IEDGEDLIADLENGFRAAN 382

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

 Score =  133 bits (335), Expect = 1e-35
 Identities = 67/392 (17%), Positives = 140/392 (35%), Gaps = 20/392 (5%)

Query: 54  EHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG 113
             G VN  I+ +++      E  +         +     Y R    T  +L + M  LEG
Sbjct: 16  TLGAVNSVIQRASSLVFDSVEAKKHATRNRANGE---LFYGRRGTLTHFSLQQAMCELEG 72

Query: 114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV 173
                       G +A+++ ++     G HV+   T Y  +    +    +    T+ F 
Sbjct: 73  GAGCVLFPC---GAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 129

Query: 174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL 233
            +   ++V       +   L         +        +  +      +++DNT++  VL
Sbjct: 130 PLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL 189

Query: 234 SPA-RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA 292
             A   G DV + + +K++ G +D + G     A     + +       L+G  ++   A
Sbjct: 190 FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA----YLMGQMVDADTA 245

Query: 293 FELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGL--EDHPHHELLKSMANKEYG 350
           +  S  +  LG+R+++H   +L  A  + +                 HE  K       G
Sbjct: 246 YITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSG 305

Query: 351 FGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKAL 410
               +       E+    ++    ++    MA S G YE+L+  +     + +  + +  
Sbjct: 306 LFSFVLKKKLNNEELANYLDNFSLFS----MAYSWGGYESLILANQPEHIAAIRPQGE-- 359

Query: 411 AGISAGLVRMSVGYLGTLDQRWSQFEKALSRM 442
              S  L+R+ +G L  +D   +  +   +R+
Sbjct: 360 IDFSGTLIRLHIG-LEDVDDLIADLDAGFARI 390

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 19/221 (8%)

Query: 126 GMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT--FVDISDHEMVNS 183
           G  A+ ++   +   G  V+     +     ++         + T      + D E V  
Sbjct: 100 GSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRR 159

Query: 184 AIVQGRTKVLYFESISNPTLAVANIPELSRL---AHDKGVTVVVDNTFSPLV-----LSP 235
           AI   RTK L   S +NPT AV     L  L   A +    +V D  +  L+      SP
Sbjct: 160 AI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP 218

Query: 236 ARLGAD--VVVHSISK-FISGGADIIAGAVCGPANLVNSMMDLHQGAL---MLLGPTMNP 289
            R+  +  + V+  +K F   G  I  G  CGP  ++ +M  + + +      +      
Sbjct: 219 GRVAPEHTLTVNGAAKAFAMTGWRI--GYACGPKEVIKAMASVSRQSTTSPDTIAQWATL 276

Query: 290 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP 330
           +           + +  + +  R  +    +  LGLK + P
Sbjct: 277 EALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRP 317

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 8e-06
 Identities = 41/310 (13%), Positives = 83/310 (26%), Gaps = 26/310 (8%)

Query: 98  NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHAL 157
           N  VLN+ +               +    ++     L        +++  R         
Sbjct: 97  NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS 156

Query: 158 LTHFFPRACNITTTFVD---ISDHEMVNSAI---VQGRTKVLYFESISNPTLAVANIPEL 211
           +         I          +D + V + I          L+  +          + EL
Sbjct: 157 MVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEEL 216

Query: 212 SRLAHDKGVTVVVDNTFS--------PLVLSPARLGADVVVHSISKFISGGADIIAGAVC 263
           + +  +  +  VV+N +          +         D  V S+ K              
Sbjct: 217 AVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP--------V 268

Query: 264 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL 323
           G A +        Q    +     +   + ++   +  LG        +           
Sbjct: 269 GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLST 328

Query: 324 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAV 383
            LK     L +  +  LL++  N       L  +D   ++   +L + L      G  AV
Sbjct: 329 QLK----KLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAV 384

Query: 384 SLGYYETLMS 393
            LG  +T+  
Sbjct: 385 PLGNVQTVSG 394

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 51/334 (15%), Positives = 109/334 (32%), Gaps = 33/334 (9%)

Query: 106 RQMAALEGTEA---AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF 162
            Q+A L G +     + + + ++   AI          G H++ ++T +           
Sbjct: 55  NQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLE 114

Query: 163 PRACNITTTFVD---ISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKG 219
                +T        I D + + +A+ +  T ++    ++N    V +I  +  +   +G
Sbjct: 115 REGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG 173

Query: 220 VTVVVD--NTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ 277
           +   VD   +   L +  ++L  D++  S  K          GA+         +     
Sbjct: 174 IIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKI---YGPKGIGALYVRRKPRVRIEAQMH 230

Query: 278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHP 336
           G     G         +       +G+       +  +     +  GL   L+ G++D  
Sbjct: 231 GGGHERGMRSGTLPVHQ------IVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIE 284

Query: 337 HHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG 396
              L   + +       +    +E E     L +          +AVS G   T  S   
Sbjct: 285 EVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD----------LAVSSGSACTSASLEP 334

Query: 397 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQ 430
           S     L   ++    ++   +R S+G   T ++
Sbjct: 335 SYVLRALGLNDE----LAHSSIRFSLGRFTTEEE 364

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 42.8 bits (100), Expect = 6e-05
 Identities = 17/176 (9%), Positives = 47/176 (26%), Gaps = 25/176 (14%)

Query: 67  TFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAG 126
           T +     + ++     +G +     Y+   +    +L + +  L G +    T     G
Sbjct: 49  TDSGTNAMSDKQWAGMMIGDE----AYAG--SENFYHLEKTVKELFGFKHIVPTHQ---G 99

Query: 127 MSAISSVLMQLCSSGGHVVAARTLYGGTHALLTH-----FFPRACNITTTFVDISDHEM- 180
             A + +       G +V               +        R      +       ++ 
Sbjct: 100 RGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDID 159

Query: 181 ----------VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDN 226
                       +  +      +         +++AN+  +  +A   G+ +  D 
Sbjct: 160 LNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA 215

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 23/215 (10%), Positives = 63/215 (29%), Gaps = 15/215 (6%)

Query: 138 CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES 197
            +    VVA    Y        +F     +        +    VN         +    S
Sbjct: 152 DAPESKVVAHAPFYPVFREQTKYF-----DKKGYVWAGNAANYVNV--SNPEQYIEMVTS 204

Query: 198 ISNPTLAVA-NIPELSRLAHDKGVTVVVDNTFSPLVLSPARLGADVVVHSISKFISGGAD 256
            +NP   +   + +  +  +D    V     ++P+         D+++ ++SKF      
Sbjct: 205 PNNPEGLLRHAVIKGCKSIYDM---VYYWPHYTPIKYKADE---DILLFTMSKFTGHSGS 258

Query: 257 IIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF 316
               A+    ++ N++++          P      + ++ + +  +    K        F
Sbjct: 259 RFGWALIKDESVYNNLLNYMT-KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTF 317

Query: 317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGF 351
             +  +     +   L+        +   ++   +
Sbjct: 318 GFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY 352

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 40/261 (15%), Positives = 81/261 (31%), Gaps = 31/261 (11%)

Query: 126 GMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFF--PRACNITTTFVDISDHEMVNS 183
           G  +I ++++ +   G  V+     +     ++      P     T         E +  
Sbjct: 99  GKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQ 158

Query: 184 AIVQGRTKVLYFESISNPT---LAVANIPELSRLAHDKGVTVVVDNTF-----------S 229
           AI   +TK+L F + SNPT        +  ++++A + G+ V+ D  +           S
Sbjct: 159 AITP-KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLS 217

Query: 230 PLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP 289
               SP      VV    +K          G + GP  LV +   +   +          
Sbjct: 218 IGAASPEAYERSVVCSGFAK-TYAMTGWRVGFLAGPVPLVKAATKIQGHSTS-------- 268

Query: 290 KVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEY 349
                +     +  +   E+    +           + +   L   P  E  K      Y
Sbjct: 269 ----NVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAF-Y 323

Query: 350 GFGGLLCLDMETEEKANRLMN 370
            F  +      + +  + L++
Sbjct: 324 MFPSIAKTGRSSLDFCSELLD 344

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	100.0
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	100.0
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	100.0
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	100.0
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	100.0
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	100.0
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	100.0
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	100.0
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.98
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.97
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.97
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.97
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.97
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.96
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.96
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.96
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.96
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.96
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.96
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.95
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.95
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.95
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.95
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.95
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.95
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.95
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.95
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.94
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.94
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.94
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.94
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.94
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.92
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.91
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.91
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.91
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.9
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.9
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.9
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.89
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.88
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.88
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.88
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.87
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.87
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.86
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.86
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.85
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.85
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.85
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.84
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.83
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.82
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.8
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.79
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.78
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.78
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.77
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.77
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.74
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.74
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.72
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.72
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.72
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.72
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.7
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.69
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.69
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.69
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.69
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.68
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.68
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.64
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.61
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.59
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.58
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.57
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.56
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.56
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.44
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.36
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.82

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=100.00  E-value=4.4e-66  Score=507.40  Aligned_cols=385  Identities=36%  Similarity=0.579  Sum_probs=358.0

Q ss_pred             CCCChhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC
Q 013079           37 AWEDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE  115 (450)
Q Consensus        37 ~~~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~  115 (450)
                      +++.|.|+++| |+.....+|+++||||.|+||.+++.+++.+.+...    ...|.|+|.+||+++.|+++||+++|++
T Consensus         4 k~~~f~T~~ih~G~~~~~~~g~v~pPI~~sST~~~~~~~~~~~~~~~~----~~~~~Y~R~~nPT~~~LE~~la~LEgg~   79 (397)
T d1y4ia1           4 RTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARFALE----ESGYIYTRLGNPTTDALEKKLAVLERGE   79 (397)
T ss_dssp             GGSCHHHHHHHTTCCCCTTTCCSSCCCCCCSCCCCSSHHHHHHHHHSC----SSSSCCCTTSCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCccceeEeCCCCCCCCCCCccCCccCCCCeeeCCHHHHHHhhcCC----cCCceeeCCCCHHHHHHHHHHHHHhCCc
Confidence            56789999999 555566789999999999999999999998888654    4569999999999999999999999999


Q ss_pred             eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEE
Q 013079          116 AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYF  195 (450)
Q Consensus       116 ~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i  195 (450)
                      .+++++|   ||.|+.+++.+++++||+||++...|+++...+...+++ +|+++++++..|++++++++ +++|++|++
T Consensus        80 ~a~~~sS---GmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~-~Gi~~~~vd~~d~~~~~~~i-~~~Tklv~~  154 (397)
T d1y4ia1          80 AGLATAS---GISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPK-FGINVRFVDAGKPEEIRAAM-RPETKVVYI  154 (397)
T ss_dssp             EEEEESS---HHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHH-TTCEEEEECTTSHHHHHHHC-CTTEEEEEE
T ss_pred             cceeehH---HHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCC-CceEeeccCCCCHHHHHHhc-CCCCcEEEe
Confidence            9999999   999999999999999999999999999999999888887 89999999999999999999 899999999


Q ss_pred             ecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH-
Q 013079          196 ESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM-  273 (450)
Q Consensus       196 ~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~-  273 (450)
                      |+|.||+..+.|+++|+++|+++|++++||+++ +++.++|.++|+|++++|++|+++|+++.+||+++++++.+.+++ 
T Consensus       155 Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~  234 (397)
T d1y4ia1         155 ETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARF  234 (397)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHH
T ss_pred             cCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHH
Confidence            999999999999999999999999999999999 899999999999999999999999999999999999988776543 


Q ss_pred             -HHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCC
Q 013079          274 -DLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYG  350 (450)
Q Consensus       274 -~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g  350 (450)
                       ..+.    ..|..+++..|++++++++++..|++++.+++..++++|++++.  +|.||+++++|+|+++++++.   |
T Consensus       235 ~~~~~----~~G~~l~p~~a~l~~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~---g  307 (397)
T d1y4ia1         235 VGLKD----ITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMS---L  307 (397)
T ss_dssp             THHHH----TTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCS---S
T ss_pred             HHHHh----CcCCcCCHHHHHHHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccC---C
Confidence             3343    57999999999999999999999999999999999999999987  899999999999999999987   7


Q ss_pred             cCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH
Q 013079          351 FGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD  429 (450)
Q Consensus       351 ~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~  429 (450)
                      +|++++|++++ .+.+.+|++.|+..   . +++|+|+.+|++++|++++|..++++++..+|+++++||||+| .|+++
T Consensus       308 ~gg~~sf~~~~~~~~~~~f~~~L~l~---~-~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvG-lEd~~  382 (397)
T d1y4ia1         308 PGGIISFEIAGGLEAGRRMINSVELC---L-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVG-LEDPE  382 (397)
T ss_dssp             CCSEEEEEETTHHHHHHHHHHTCSSS---E-ECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHH
T ss_pred             CCeEEEEEecCCHHHHHHHHHcCCcc---c-eeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEec-cCCHH
Confidence            89999999984 55578999999974   3 7999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHh
Q 013079          430 QRWSQFEKALSRM  442 (450)
Q Consensus       430 ~~i~~l~~al~~~  442 (450)
                      |+|++|.+||++.
T Consensus       383 DLi~Dl~~AL~~a  395 (397)
T d1y4ia1         383 DIINDLEHAIRKA  395 (397)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.6e-65  Score=503.17  Aligned_cols=382  Identities=37%  Similarity=0.543  Sum_probs=321.7

Q ss_pred             ChhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEE
Q 013079           40 DPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAY  118 (450)
Q Consensus        40 ~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~  118 (450)
                      .|.|+++| |+++...+|+|+|||+.|+||.+++.+++.+.+.+.    ...|.|+|.+||+++.|+++||+++|++.++
T Consensus         3 g~~T~~vH~G~~~~~~~g~v~pPI~~ssT~~f~~~~~~~~~~~~~----~~~~~Y~R~~nPT~~~LE~~la~LEg~~~a~   78 (392)
T d1gc0a_           3 GFATRAIHHGYDPQDHGGALVPPVYQTATFTFPTVEYGAACFAGE----QAGHFYSRISNPTLNLLEARMASLEGGEAGL   78 (392)
T ss_dssp             CHHHHHHHTTCCGGGGTTBSSCCBCCCSCBCCC-------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CcchhceeCCCCCCCCCCCeeCCccCCCCEeeCCHHHHHHhhcCC----cCCceecCCCChHHHHHHHHHHHHhCCccee
Confidence            46777777 556666789999999999999999988877766543    5678999999999999999999999999999


Q ss_pred             EecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecC
Q 013079          119 CTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESI  198 (450)
Q Consensus       119 ~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~  198 (450)
                      +++|   |+.|+.+++.+++++||+|++++..|+++...+...+++ +|+++.+++..|++++++++ +++|++|++|+|
T Consensus        79 ~~~S---GmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~-~Gi~~~~~d~~d~~~~~~ai-~~~t~lv~~Esp  153 (392)
T d1gc0a_          79 ALAS---GMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRHVDMADLQALEAAM-TPATRVIYFESP  153 (392)
T ss_dssp             EESS---HHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEEECTTCHHHHHHHC-CTTEEEEEEESS
T ss_pred             ehhh---HHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhcc-CCcccccCCccCHHHHHHhC-CCCCeEEEeccc
Confidence            9999   999999999999999999999999999999999888887 89999999999999999999 899999999999


Q ss_pred             CCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHH--HH
Q 013079          199 SNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMM--DL  275 (450)
Q Consensus       199 ~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~--~~  275 (450)
                      .||++.+.|+++|+++||++|++++||+++ +++.++|.++|+|++++|++|+++|+++.++|.++++++.+.+++  ..
T Consensus       154 ~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~  233 (392)
T d1gc0a_         154 ANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGL  233 (392)
T ss_dssp             CTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHH
T ss_pred             ccceeeecchHHHHHHHHhcCCEEEEecCccCccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHH
Confidence            999999999999999999999999999999 788899999999999999999999999999999999988876653  33


Q ss_pred             hhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          276 HQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       276 ~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                      +.    ..|..+++..|+++.++++++..|++++.+++..++++|++++.  +|+||+++++|+|+++++++.   ++|+
T Consensus       234 ~~----~~G~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---~~gg  306 (392)
T d1gc0a_         234 KD----MTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS---QPGG  306 (392)
T ss_dssp             HH----HTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-------------------CCTT
T ss_pred             HH----ccCCcCChhhHHHHHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCccccccccccc---CCCc
Confidence            43    57999999999999999999999999999999999999999987  899999999999999999887   6799


Q ss_pred             EEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHH
Q 013079          354 LLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRW  432 (450)
Q Consensus       354 ~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i  432 (450)
                      +++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++++..+|+++++||||+| .|+.+|+|
T Consensus       307 ~~sf~l~~~~~~~~~f~~~L~l~~----~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVG-lEd~eDLi  381 (392)
T d1gc0a_         307 MIAFELKGGIGAGRRFMNALQLFS----RAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVG-LEDIDDLL  381 (392)
T ss_dssp             EEEEEETTHHHHHHHHHHHCSSSE----ECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECC-SSCHHHHH
T ss_pred             EEEEEEeCCHHHHHHHHHhCCcce----EeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEee-eCCHHHHH
Confidence            9999997 5566789999999733    7999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHh
Q 013079          433 SQFEKALSRM  442 (450)
Q Consensus       433 ~~l~~al~~~  442 (450)
                      ++|.+||+..
T Consensus       382 ~Dl~~AL~aa  391 (392)
T d1gc0a_         382 ADVQQALKAS  391 (392)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999863

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=7.3e-64  Score=492.32  Aligned_cols=382  Identities=29%  Similarity=0.496  Sum_probs=351.8

Q ss_pred             hhHHHhh-cCC--CCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           41 PAAALAS-ARH--EFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        41 ~~~~~~~-~~~--~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      +.|..+| |+.  ....+|+++||||+||||.+++.+++.+.+.+.    ...|.|+|.+||+++.|+++||+++|++.+
T Consensus        10 ~~T~avH~G~~~~~~~~~~av~~PI~~sst~~~~~~~~~~~~~~~~----~~~~~Y~R~~nPt~~~LE~~la~LEgg~~a   85 (398)
T d1qgna_          10 DGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKR----RASFEYGRYGNPTTVVLEEKISALEGAEST   85 (398)
T ss_dssp             HHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTS----SCCCCBGGGCCHHHHHHHHHHHHHHTCSEE
T ss_pred             CccEEEeCCCcCCCCCCCCCccCCeeCCCcEEeCCHHHHHHHhcCC----cCCceecCCCChHHHHHHHHHHHHhCCceE
Confidence            3455555 543  233579999999999999999999998888654    567999999999999999999999999999


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEec
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      ++++|   ||.|+..++.+++++||+|+++...|+++...+..++++ +|+++.+++..+.++.++.+.+++|++|++|+
T Consensus        86 ~~~sS---GMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~-~gi~~~~~~~~~~~~~~~~~~~~~t~~v~~Es  161 (398)
T d1qgna_          86 LLMAS---GMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVIDPADVGALELALNQKKVNLFFTES  161 (398)
T ss_dssp             EEESC---HHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECSSCHHHHHHHHHHSCEEEEEEES
T ss_pred             EEecC---cchHHHHHHhhcccccccccccccccchhhhhhcccccc-cccccccccccchhhhhhhhccccceEEEccC
Confidence            99999   999999999999999999999999999999999888887 89999999977777666544378999999999


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH  276 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~  276 (450)
                      |.||+..+.|+++|+++|+++|+++|||+++ +++.++|+++|+|++++|++|+++|+++.+||+++.+++++..++..+
T Consensus       162 psNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~  241 (398)
T d1qgna_         162 PTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH  241 (398)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhc
Confidence            9999999999999999999999999999999 889999999999999999999999999999999999999988888776


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .    ..|..+++..|++++++++++..|++++.+++..++++|++++.  +|.||+++++|+|+++++++.   |+|++
T Consensus       242 ~----~~G~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~---g~g~~  314 (398)
T d1qgna_         242 H----ILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMT---GFGGA  314 (398)
T ss_dssp             H----HHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCS---CCCSE
T ss_pred             c----cCCCcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcC---CCCce
Confidence            6    78999999999999999999999999999999999999999987  899999999999999999987   78999


Q ss_pred             EEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          355 LCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       355 ~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      ++|.+. +.+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++++..+|+++++||||+| +|+.+|+|+
T Consensus       315 ~sf~~~g~~~~a~~f~~~L~l~~----~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG-lEd~eDLi~  389 (398)
T d1qgna_         315 VSFEVDGDLLTTAKFVDALKIPY----IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG-VEDFDDLKA  389 (398)
T ss_dssp             EEEEESSCHHHHHHHHHHCSSSE----ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC-SSCHHHHHH
T ss_pred             eeeeecCCHHHHHHHHHcCCcce----eeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEec-cCCHHHHHH
Confidence            999998 7788899999998633    7999999999999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHh
Q 013079          434 QFEKALSRM  442 (450)
Q Consensus       434 ~l~~al~~~  442 (450)
                      +|++||+++
T Consensus       390 Dl~~AL~~i  398 (398)
T d1qgna_         390 DILQALDSI  398 (398)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999999875

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=100.00  E-value=6.4e-64  Score=493.87  Aligned_cols=388  Identities=34%  Similarity=0.563  Sum_probs=357.7

Q ss_pred             CCCChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079           37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA  116 (450)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~  116 (450)
                      +.|+|.|+++|+.+..+++|+++||||+||||.+++.+++.+.+.+.    ..+|.|+|.+||+++.|++.||+++|++.
T Consensus         1 ~~~~~~T~~vh~g~~~d~~gav~~PI~~sst~~~~~~~~~~~~~~~~----~~~~~YsR~~nPT~~~le~~la~LEg~~~   76 (394)
T d1e5ea_           1 ERMTPATACIHANPQKDQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQ----ESGYIYTRLGNPTVSNLEGKIAFLEKTEA   76 (394)
T ss_dssp             CCCCHHHHHHHSSCCCCTTCCSSCCCCCCSBCCCSSHHHHHHHHTTS----SCSCCBTTTCCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCCHHHHheeCCCCCCCCCCeeCCccCCCCeeeCCHHHHHHhhcCC----cCCceecCCCCHHHHHHHHHHHHHhCCcc
Confidence            46789999999776667899999999999999999999999888765    45699999999999999999999999999


Q ss_pred             EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      ++.++|   |+.|+.+++.+++++||+|++++..|+++...+...+++ .|+++++++..|++++++++ +++|++|++|
T Consensus        77 a~~~sS---GmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~-~gi~~~~~d~~d~~~~~~~i-~~~t~lv~~E  151 (394)
T d1e5ea_          77 CVATSS---GMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTK-FGIQVDFINTAIPGEVKKHM-KPNTKIVYFE  151 (394)
T ss_dssp             EEEESS---HHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHHHHC-CTTEEEEEEE
T ss_pred             eeeecc---chHHHHHHHHhhcccccccccccceeehhhHhHHHHhhc-cceeeeccCCCCHHHHHHhh-cccccEEEEe
Confidence            999999   999999999999999999999999999999999888887 89999999999999999999 8999999999


Q ss_pred             cCCCCcccccCHHHHHHHHHh-cCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          197 SISNPTLAVANIPELSRLAHD-KGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~-~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                      +|.||+..+.|++++++++++ +|+++++|+++ +++.++|.++|+|++++|++|+++|+++.+||+++++++.+...+.
T Consensus       152 tp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~  231 (394)
T d1e5ea_         152 TPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRM  231 (394)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHH
T ss_pred             ccCCcceeeehhhhhhhccccccCeEEEecCcccCcccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHH
Confidence            999999999999999987765 68999999999 8999999999999999999999999999999999998887766543


Q ss_pred             HhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcC
Q 013079          275 LHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFG  352 (450)
Q Consensus       275 ~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g  352 (450)
                      ..  .....|..+++..|+++.++++++..|++++.+++..++++|++++.  +|.||+++++|+|++++++++   |+|
T Consensus       232 ~~--~~~~~G~~lsp~~a~ll~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---~~G  306 (394)
T d1e5ea_         232 VG--IKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMR---MYG  306 (394)
T ss_dssp             TC--CCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCS---SCC
T ss_pred             HH--HHHhhCCCCChHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccc---cCC
Confidence            21  11257999999999999999999999999999999999999999987  899999999999999999987   789


Q ss_pred             cEEEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          353 GLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       353 ~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      ++++|.+.+ .+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++++..+|+++++||||+| .|+++|+
T Consensus       307 ~~~sf~~~~~~~~a~~f~~~l~l~~----~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVG-lEd~eDL  381 (394)
T d1e5ea_         307 SMITFILKSGFEGAKKLLDNLKLIT----LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG-IEDADEL  381 (394)
T ss_dssp             SEEEEEETTHHHHHHHHHHTCSSSE----ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC-SSCHHHH
T ss_pred             CeeeeeccCCHHHHHHHHHhCCccc----eeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEec-cCCHHHH
Confidence            999999884 466889999998633    7999999999999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHhh
Q 013079          432 WSQFEKALSRMQ  443 (450)
Q Consensus       432 i~~l~~al~~~~  443 (450)
                      |++|++||+++.
T Consensus       382 i~Dl~qAl~~l~  393 (394)
T d1e5ea_         382 IADFKQGLDALL  393 (394)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999999875

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-63  Score=489.30  Aligned_cols=375  Identities=30%  Similarity=0.429  Sum_probs=347.1

Q ss_pred             hhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      |.|.++| |+....++|+++||||.|+||.+++.++            ...|.|+|.+||+++.|+++||+++|++.+++
T Consensus         3 ~~T~~vh~G~~~~~~~gav~pPI~~sst~~~~~~~~------------~~~~~Y~R~~nPt~~~le~~la~LEgg~~a~~   70 (384)
T d1cs1a_           3 QATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNE------------PRAHDYSRRGNPTRDVVQRALAELEGGAGAVL   70 (384)
T ss_dssp             HHHHHHHTTTTCCTTTCBSSCCBCCCSBBCCSBTTB------------CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             hhhheeeCCCCCCCCCCCccCCccCCCCeecCCCCc------------ccCCcccCCCCHHHHHHHHHHHHHhCCCceEE
Confidence            6666666 6666678999999999999999987532            24588999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   ||.|+..++.+++++||+|+++...|+++...+...+++ .|+.+.+++..|.+++++++ +++|++|++|+|.
T Consensus        71 ~sS---GMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~-~g~~~~~~d~~d~~~~~~~~-~~~t~~v~~Esps  145 (384)
T d1cs1a_          71 TNT---GMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVLFVDQGDEQALRAAL-AEKPKLVLVESPS  145 (384)
T ss_dssp             ESS---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEEEECTTCHHHHHHHH-HTCCSEEEEECSC
T ss_pred             ecC---hHHHHHHHHhhcccccceecccccccchhhhhhhhhhcc-cccccccccCCCHHHHHhhc-cccccEEEEeccc
Confidence            999   999999999999999999999999999999999888887 89999999999999999999 8999999999999


Q ss_pred             CCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhh
Q 013079          200 NPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQ  277 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~  277 (450)
                      ||+..+.|+++|+++|+++|+++|||+++ +++.++|+++|+|++++|++|+++|+++.++|+++.+ +.+.+.+...+.
T Consensus       146 NP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~  225 (384)
T d1cs1a_         146 NPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN  225 (384)
T ss_dssp             TTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH
T ss_pred             cccceeccHHHHhhhhhhcCcEEEEeccccCcccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhh
Confidence            99999999999999999999999999999 8999999999999999999999999999999988774 566677766665


Q ss_pred             hhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEE
Q 013079          278 GALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLL  355 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~  355 (450)
                          ..|..+++..|+++.++++++..|++++.+++..++++|++++.  +|.||+++++|+|++++++++   |+|+++
T Consensus       226 ----~~G~~~~p~~a~ll~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~---g~gg~~  298 (384)
T d1cs1a_         226 ----NIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQK---GFGAML  298 (384)
T ss_dssp             ----HHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCS---SCCSEE
T ss_pred             ----hhhhccccccHHHHhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcC---CCccee
Confidence                67899999999999999999999999999999999999999987  899999999999999999886   789999


Q ss_pred             EEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHH
Q 013079          356 CLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQ  434 (450)
Q Consensus       356 ~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~  434 (450)
                      +|.+. +.+.+.+|++.|+..   . +++|+|+.+|++++|++++|..++++.+..+|+++++||||+| +|+++|+|++
T Consensus       299 sf~l~~~~~~a~~f~~~L~l~---~-~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvG-lEd~eDLi~D  373 (384)
T d1cs1a_         299 SFELDGDEQTLRRFLGGLSLF---T-LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTG-IEDGEDLIAD  373 (384)
T ss_dssp             EEEESSCHHHHHHHHHTCSSS---E-EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECC-SSCHHHHHHH
T ss_pred             EEeecchHHHHHHHHHhCCcc---e-eccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEec-cCCHHHHHHH
Confidence            99997 677788999999973   3 7999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHhhh
Q 013079          435 FEKALSRMQD  444 (450)
Q Consensus       435 l~~al~~~~~  444 (450)
                      |++||+++.+
T Consensus       374 l~~AL~aa~~  383 (384)
T d1cs1a_         374 LENGFRAANK  383 (384)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9999998864

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.1e-63  Score=489.79  Aligned_cols=385  Identities=30%  Similarity=0.439  Sum_probs=344.5

Q ss_pred             CChhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeE
Q 013079           39 EDPAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAA  117 (450)
Q Consensus        39 ~~~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~  117 (450)
                      |.|.|+++| |++....+|+++||||.|+||.+++.+++.+.+...    ..+|.|+|.+||+++.|+++||+++|++.+
T Consensus         1 mk~~T~~vh~g~~~~~~~gsv~pPI~~sstf~~~~~~~~~~~~~~~----~~~~~YsR~~nPT~~~LE~~la~LE~~~~a   76 (421)
T d2ctza1           1 MRFETLQLHAGYEPEPTTLSRQVPIYPTTSYVFKSPEHAANLFALK----EFGNIYSRIMNPTVDVLEKRLAALEGGKAA   76 (421)
T ss_dssp             CCHHHHHHHTTCCCCTTTCBSSCCBCCCSCBCCSCHHHHHHHHTTT----TGGGSCBTTBCHHHHHHHHHHHHHHTCSEE
T ss_pred             CChhHhheeCCCCCCCCCCCccCCccCCCCeecCCHHHHHHhhcCC----cCCceecCCCCHHHHHHHHHHHHHhCCCeE
Confidence            457788888 565566789999999999999999999999988765    456999999999999999999999999999


Q ss_pred             EEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCC-HHHHHHhhhcCCceEEEEe
Q 013079          118 YCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISD-HEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       118 ~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d-~~~l~~ai~~~~t~lv~i~  196 (450)
                      +.++|   |+.|+.+++.+++++||+||+++..|+++...+...+++ +|+++.+++..+ .+..++.+ +++|++|++|
T Consensus        77 ~~~~S---GmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~-~gi~~~~~d~~~~~~~~~~~~-~~~t~li~~E  151 (421)
T d2ctza1          77 LATAS---GHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFTSREERPEEFLALT-DEKTRAWWVE  151 (421)
T ss_dssp             EEESS---HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEECCTTCCHHHHHHHC-CTTEEEEEEE
T ss_pred             EEecC---hHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhh-ccccceecccccCcchhcccc-CCCceEEEEc
Confidence            99999   999999999999999999999999999999999888887 899999998765 45556666 8899999999


Q ss_pred             cCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH------
Q 013079          197 SISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL------  268 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~------  268 (450)
                      +|.||+..+.|+++|+++||++|++++||+++  +++.++|+++|+|++++|++|+++|+++.+||+++.+++.      
T Consensus       152 tpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r  231 (421)
T d2ctza1         152 SIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGR  231 (421)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTT
T ss_pred             CCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcc
Confidence            99999999999999999999999999999998  4788999999999999999999999999999999864321      


Q ss_pred             ----------------HHH------HHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-
Q 013079          269 ----------------VNS------MMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-  325 (450)
Q Consensus       269 ----------------~~~------l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-  325 (450)
                                      .+.      +.+.+.......|..+++..|++++++++++..|++++.+++..++++|++++. 
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V  311 (421)
T d2ctza1         232 YPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQV  311 (421)
T ss_dssp             CHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             cccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHhhhccCCCe
Confidence                            111      112222223357999999999999999999999999999999999999999987 


Q ss_pred             -eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCC
Q 013079          326 -KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL  403 (450)
Q Consensus       326 -~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~  403 (450)
                       +|.||+++++|+|+++++++.+  ++|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|++++|..+
T Consensus       312 ~~V~yPgL~s~p~~~~a~~~~~g--~~G~~~sf~l~~~~~~a~~f~~~L~l~~----~a~SlGg~eSLi~~pa~~th~~~  385 (421)
T d2ctza1         312 AWVNYPGLPHHPHHDRAQKYFKG--KPGAVLTFGLKGGYEAAKRFISRLKLIS----HLANVGDTRTLAIHPASTTHSQL  385 (421)
T ss_dssp             EEEECTTSTTCTTHHHHHHHHTT--CCCSEEEEEETTHHHHHHHHHHTCSSSE----ECSCCCCSSCEEECGGGTTTTTS
T ss_pred             eEEecCCcCCCccHHHHHHhcCC--CCceEEEEEecCCHHHHHHHHHcCCcCe----eccccccccceeeCcccccchhC
Confidence             8999999999999999999974  56899999998 5566889999999743    79999999999999999999999


Q ss_pred             CHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 013079          404 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKAL  439 (450)
Q Consensus       404 ~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al  439 (450)
                      +++++..+|+++++||||+| .|+.+|+|++|++||
T Consensus       386 ~~e~r~~~GI~~~liRlSvG-lEd~eDLi~DL~qAL  420 (421)
T d2ctza1         386 SPEEQAQAGVSPEMVRLSVG-LEHVEDLKAELKEAL  420 (421)
T ss_dssp             CHHHHHHHTCCTTEEEEECC-SSCHHHHHHHHHHHT
T ss_pred             CHHHHHhcCCCcCeEEEEec-cCCHHHHHHHHHHhc
Confidence            99999999999999999999 999999999999997

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.7e-63  Score=484.93  Aligned_cols=372  Identities=29%  Similarity=0.476  Sum_probs=346.5

Q ss_pred             hhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEe
Q 013079           41 PAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCT  120 (450)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~t  120 (450)
                      +.|.++|.+...+++|+++||||.+|||.+++..+            ...|.|+|.+||+++.|+++||+++|++.++++
T Consensus         3 ~~t~~~h~~~~~dp~ga~~~PI~~sstf~~~~~~~------------~~~~~Y~R~~nPt~~~le~~la~LE~~~~a~~f   70 (380)
T d1ibja_           3 VSTLLVNLDNKFDPFDAMSTPLYQTATFKQPSAIE------------NGPYDYTRSGNPTRDALESLLAKLDKADRAFCF   70 (380)
T ss_dssp             HHHHHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSC------------CCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HhHhhhcCCCCCCCCCCccCCccCCcceecCCCCc------------cCCceeeCCCChHHHHHHHHHHHHcCCceEEeh
Confidence            67888998777888999999999999999987421            346899999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCC
Q 013079          121 ASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISN  200 (450)
Q Consensus       121 sg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~N  200 (450)
                      +|   ||.|+. ++..++++||+|+++.+.|+++...++..+++ +|+++.+++..|++++++++ +++|++|++|+|.|
T Consensus        71 sS---GMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~-~gi~~~~~d~~~~~~~~~ai-~~~t~li~~EtpsN  144 (380)
T d1ibja_          71 TS---GMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPR-SGVVVKRVNTTKLDEVAAAI-GPQTKLVWLESPTN  144 (380)
T ss_dssp             SS---HHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGG-GTCEEEEECTTSHHHHHHHC-CSSEEEEEECSSCT
T ss_pred             hh---HHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhcc-ccccccccCcchHHHHHHHh-ccCccEEEeccccc
Confidence            99   999997 56678999999999999999999999988887 89999999999999999999 89999999999999


Q ss_pred             CcccccCHHHHHHHHHhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhh
Q 013079          201 PTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQG  278 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~  278 (450)
                      |++.+.|+++|+++|+++|+++|||+++ +++.++|+++|+|++++|++|+++|+++.++|+++.+ ..+.+.++..+. 
T Consensus       145 P~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~-  223 (380)
T d1ibja_         145 PRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN-  223 (380)
T ss_dssp             TTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH-
T ss_pred             cccccccHHHHHHHHHHcCCeEEeeccccccccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhcc-
Confidence            9999999999999999999999999999 8899999999999999999999999999999998655 567777777666 


Q ss_pred             hhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEE
Q 013079          279 ALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLC  356 (450)
Q Consensus       279 ~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~  356 (450)
                         ..|..+++..|+++.++++++..|++++.+++..++++|++++.  +|.||+++++|+|+++++++.   ++|++++
T Consensus       224 ---~~G~~l~p~~a~ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~---~~g~~~s  297 (380)
T d1ibja_         224 ---SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK---GAGSVFS  297 (380)
T ss_dssp             ---HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCS---CCCSEEE
T ss_pred             ---ccCCcCCHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccc---ccccccc
Confidence               78999999999999999999999999999999999999999987  899999999999999999886   7899999


Q ss_pred             EEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 013079          357 LDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFE  436 (450)
Q Consensus       357 ~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~  436 (450)
                      |.+.+.+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++++..+|+++++||||+| .|+.+|+|++|+
T Consensus       298 ~~~~~~~~a~~f~d~l~l~~----~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvG-lE~~eDLi~Dl~  372 (380)
T d1ibja_         298 FITGSVALSKHLVETTKYFS----IAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAG-IEDVDDLISDLD  372 (380)
T ss_dssp             EECSCHHHHHHHHHHCSSSE----ECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECC-SSCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhCCcCe----EeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEec-cCCHHHHHHHHH
Confidence            99998888999999998643    7999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHh
Q 013079          437 KALSRM  442 (450)
Q Consensus       437 ~al~~~  442 (450)
                      +||+.+
T Consensus       373 qAl~~l  378 (380)
T d1ibja_         373 IAFKTF  378 (380)
T ss_dssp             HHHHSC
T ss_pred             HHHHhc
Confidence            999875

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-61  Score=475.21  Aligned_cols=380  Identities=21%  Similarity=0.365  Sum_probs=345.4

Q ss_pred             hhHHHhh-cCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEE
Q 013079           41 PAAALAS-ARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYC  119 (450)
Q Consensus        41 ~~~~~~~-~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~  119 (450)
                      |.|+++| |+.....+|+++||||.|+||.+++.+++...+.+.   ..+.|.|+|.+||+++.|+++||+++|++.++.
T Consensus         2 ~~T~~vh~g~~~~~~~g~v~pPi~~sst~~f~~~~~~~~~~~~~---~~~~~~Y~R~~nPt~~~le~~la~LEg~~~a~~   78 (391)
T d1cl1a_           2 LDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNR---ANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL   78 (391)
T ss_dssp             HHHHHHHTTCCHHHHTTBSSCCBCCCSCBCCSSHHHHHHHHHTT---TTTCCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             cccceecCCCCCCCCCCCccCCeeCCCceeeCCHHHHHHHhcCC---ccCceEeECCCChhHHHHHHHHHHHhCCccEEE
Confidence            5677777 555555789999999999999999998888777654   234588999999999999999999999999999


Q ss_pred             ecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCC
Q 013079          120 TASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESIS  199 (450)
Q Consensus       120 tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~  199 (450)
                      ++|   ||.|+.+++.+++++||+||++...|+++...+...+++ .|+++.+++..|.+++++++ +++|++|++|+|.
T Consensus        79 ~~S---GMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~-~Gi~~~~~d~~d~~~~~~~i-~~~t~~i~~Etps  153 (391)
T d1cl1a_          79 FPC---GAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWFDPLIGADIVKHL-QPNTKIVFLESPG  153 (391)
T ss_dssp             ESS---HHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEECTTCGGGGGGTC-CTTEEEEEEESSC
T ss_pred             ecc---ccceeeehhhcccCCCCeEEEecccccchhhhhhhcccc-cccccccccCcccccccccc-ccccceeeecccC
Confidence            999   999999999999999999999999999999999888887 89999999999999999999 8999999999999


Q ss_pred             CCcccccCHHHHHHHHHhc--CCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHh
Q 013079          200 NPTLAVANIPELSRLAHDK--GVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLH  276 (450)
Q Consensus       200 NptG~v~~l~~I~~la~~~--gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~  276 (450)
                      ||+..+.|+++|+++|+++  |++++||+++ +++.++|+++|+|++++|++|+++|+++.+||.++.++++.+.+...+
T Consensus       154 NP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~  233 (391)
T d1cl1a_         154 SITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA  233 (391)
T ss_dssp             TTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH
T ss_pred             cccccccccHHHHHHHHhccCCcEEEEeccccchhhhcccccccceEEeecchhccccccccccceeccccccccchhhh
Confidence            9999999999999999774  9999999999 889999999999999999999999999999999999888888887766


Q ss_pred             hhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          277 QGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       277 ~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                      .    ..|..+++..|+++.++++++..|++++.+++..++++|++++.  +|.||+++++|+|+++++++.   |.|++
T Consensus       234 ~----~~G~~~~p~~a~ll~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~---g~gg~  306 (391)
T d1cl1a_         234 Y----LMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFT---GSSGL  306 (391)
T ss_dssp             H----HTTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCS---CCCSE
T ss_pred             h----cccccCCchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccC---CCCcc
Confidence            6    68999999999999999999999999999999999999999987  899999999999999999987   78999


Q ss_pred             EEEEeC---CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHH
Q 013079          355 LCLDME---TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQR  431 (450)
Q Consensus       355 ~~~~l~---~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~  431 (450)
                      ++|.+.   +.+.+.+|++.|+...    +++|+|+.+|++++|..+++..+.++  ..+|+++++||||+| .|+++|+
T Consensus       307 ~sf~l~~~~~~e~~~~f~d~L~l~~----~a~SlG~~~SLi~~~~~~~~~~~~~~--~~~gi~~~liRlSVG-lEd~eDL  379 (391)
T d1cl1a_         307 FSFVLKKKLNNEELANYLDNFSLFS----MAYSWGGYESLILANQPEHIAAIRPQ--GEIDFSGTLIRLHIG-LEDVDDL  379 (391)
T ss_dssp             EEEEESSCCCHHHHHHHHTTCSSCB----CCSCCCSSSCEEEEECHHHHHHTSTT--CCCCCCSCEEEEECC-SSCHHHH
T ss_pred             eeeeecCCCCHHHHHHHHHcCCcce----EeeCCCCCccceeCCcccccccCCch--HhcCCCcCEEEEEec-cCCHHHH
Confidence            999997   5566788999998633    79999999999998887766655543  347999999999999 9999999


Q ss_pred             HHHHHHHHHHh
Q 013079          432 WSQFEKALSRM  442 (450)
Q Consensus       432 i~~l~~al~~~  442 (450)
                      +++|++||+++
T Consensus       380 i~Dl~~AL~~i  390 (391)
T d1cl1a_         380 IADLDAGFARI  390 (391)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999999986

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-60  Score=465.53  Aligned_cols=379  Identities=29%  Similarity=0.434  Sum_probs=342.4

Q ss_pred             CCCChhHHHhhcCCCCCCCCcccccccccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCe
Q 013079           37 AWEDPAAALASARHEFGEHGGVNMSIEASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEA  116 (450)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~pi~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~  116 (450)
                      +..+|.|+++|+.+..+.+|+++|||+.||||.+++.+           ++.+.|.|+|.+||+++.|+++||+++|++.
T Consensus         4 ~~~~f~T~~vHag~~~d~~gav~pPI~~ssTf~~~~~~-----------~~~~~y~YsR~gnPT~~~lE~~la~LE~~~~   72 (393)
T d1n8pa_           4 ESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPA-----------NPIGTYEYSRSQNPNRENLERAVAALENAQY   72 (393)
T ss_dssp             SSCCHHHHHHHTTCCCCSSCCSSCCBCCCSBCCBSSSS-----------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSE
T ss_pred             CCCCcchheEECCCCCCCCCCccCCcCCCCceecCCcc-----------cccCCeeeeCCCChHHHHHHHHHHHHhCCce
Confidence            34468999999766666789999999999999998742           2245699999999999999999999999999


Q ss_pred             EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEe
Q 013079          117 AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFE  196 (450)
Q Consensus       117 ~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~  196 (450)
                      +++++|   |+.|+.+++ .++.+||+|+++...|+++...+..++++ +|+++.+++. +.+++++++ +++|++|++|
T Consensus        73 a~~~sS---GmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~-~gi~~~~~~~-~~~~~~~~i-~~~t~lv~~E  145 (393)
T d1n8pa_          73 GLAFSS---GSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSFTND-LLNDLPQLI-KENTKLVWIE  145 (393)
T ss_dssp             EEEESC---HHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEEESS-HHHHHHHHS-CSSEEEEEEC
T ss_pred             EEEecC---chhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhc-ccceeEEeec-chHHHHHHh-hhhcceeEec
Confidence            999999   999997554 67788999999999999999999999987 8999999884 568899999 8999999999


Q ss_pred             cCCCCcccccCHHHHHHHHH----hcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEc-CHHHHH
Q 013079          197 SISNPTLAVANIPELSRLAH----DKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCG-PANLVN  270 (450)
Q Consensus       197 ~~~NptG~v~~l~~I~~la~----~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~  270 (450)
                      +|.||+..+.|+++|+++|+    ++|+++|||+++ +++.++|+++|+|++++|++|+++|+++.+||+++. ++.+.+
T Consensus       146 spsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~  225 (393)
T d1n8pa_         146 TPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYE  225 (393)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH
T ss_pred             CcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHH
Confidence            99999999999999999999    679999999999 888999999999999999999999999999999864 566778


Q ss_pred             HHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhC-CC--eeeCCCCCCCchhHHHHHHhcc
Q 013079          271 SMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKL-GL--KVLYPGLEDHPHHELLKSMANK  347 (450)
Q Consensus       271 ~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~--~v~~p~~~~~p~~~l~~~~~~~  347 (450)
                      +++..+.    ..|..+++..|++++++++++..|++++.+++..++++|+++ +.  +|.||+++++|+|+++++++.+
T Consensus       226 ~l~~~~~----~~G~~~~p~~a~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~  301 (393)
T d1n8pa_         226 RLQFLQN----AIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRD  301 (393)
T ss_dssp             HHHHHHH----HHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGG
T ss_pred             HHHHHHh----hcCCCCChHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhcccc
Confidence            8877766    789999999999999999999999999999999999999876 53  8999999999999999988763


Q ss_pred             CCCcCcEEEEEeC-CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC
Q 013079          348 EYGFGGLLCLDME-TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG  426 (450)
Q Consensus       348 ~~g~g~~~~~~l~-~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~  426 (450)
                      . ++|++++|+++ +.+.+.+|++.|+...    +++|+|+.+|++++|++++|..++++.+...|+++++||||+| .|
T Consensus       302 ~-~~G~~~sf~l~~~~~~~~~f~~~l~l~~----~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvG-lE  375 (393)
T d1n8pa_         302 A-LGGGMISFRIKGGAEAASKFASSTRLFT----LAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVG-IE  375 (393)
T ss_dssp             G-CCCSEEEEEESSCHHHHHHHHHHCSSSE----ECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECC-SS
T ss_pred             C-CCCceEEEEEeCCHHHHHHHHHhCCcce----ecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEec-cC
Confidence            2 46899999997 7777899999998633    7999999999999999999999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHhh
Q 013079          427 TLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       427 ~~~~~i~~l~~al~~~~  443 (450)
                      +++|+|++|.+||++..
T Consensus       376 ~~~DLi~Dl~~AL~~a~  392 (393)
T d1n8pa_         376 DTDDLLEDIKQALKQAT  392 (393)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999998753

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=100.00  E-value=1.9e-53  Score=410.80  Aligned_cols=325  Identities=33%  Similarity=0.571  Sum_probs=302.2

Q ss_pred             HHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHH
Q 013079          103 NLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVN  182 (450)
Q Consensus       103 ~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~  182 (450)
                      .|+++||+++|++.++.++|   ||.|+..++.+++++||+|+++...|+++...++..+++ +|+++++++..|++.++
T Consensus         2 aLE~~la~Leg~~~a~~~sS---GMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~-~gi~~~~~d~~d~~~~~   77 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATAS---GMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDMAVPGNIE   77 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECTTSTTHHH
T ss_pred             HHHHHHHHHhCCCeEEEECC---HHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHh-cCeEEEEecccchhhHh
Confidence            58999999999999999999   999999999999999999999999999999999888887 89999999999999999


Q ss_pred             HhhhcCCceEEEEecCCCCcccccCHHHHHHHH-HhcCCEEEEeCCC-CCCCCCccCCCCeEEEeCCCCccccCccceEE
Q 013079          183 SAIVQGRTKVLYFESISNPTLAVANIPELSRLA-HDKGVTVVVDNTF-SPLVLSPARLGADVVVHSISKFISGGADIIAG  260 (450)
Q Consensus       183 ~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la-~~~gi~livD~~~-~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG  260 (450)
                      +++ +++|++|++|+|.||+..+.|++++++++ +++|+++|||+++ +++.++|.++|+|++++|++|+++|+++.+||
T Consensus        78 ~~i-~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G  156 (331)
T d1pffa_          78 KHL-KPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAG  156 (331)
T ss_dssp             HTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCE
T ss_pred             hhc-ccccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccccccccCCCEEEecchhhcCCCCccccc
Confidence            999 89999999999999999999999999985 6789999999999 78889999999999999999999999999999


Q ss_pred             EEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC--eeeCCCCCCCchh
Q 013079          261 AVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL--KVLYPGLEDHPHH  338 (450)
Q Consensus       261 ~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~  338 (450)
                      +++.+++.....+...  .....|..+++..|+++.++++++..|++++.+++..++++|++++.  +|.||+++++|+|
T Consensus       157 ~v~~~~~~~~~~~~~~--~~~~~G~~l~p~~a~ll~rgl~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~  234 (331)
T d1pffa_         157 LVCSRADIIAKVKSQG--IKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGH  234 (331)
T ss_dssp             EEEECHHHHHHHHHTC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTH
T ss_pred             cccccccchhhhhhhh--hhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHH
Confidence            9999877665544321  11257999999999999999999999999999999999999999987  8999999999999


Q ss_pred             HHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeE
Q 013079          339 ELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLV  418 (450)
Q Consensus       339 ~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~i  418 (450)
                      +++++++.   ++|++++|.+++.+.+.+|++.|+.   |+ +++|+|+.+|++++|++++|..++++++..+|+++++|
T Consensus       235 ~~~~~~~~---~~g~l~sf~l~~~~~~~~f~d~l~l---f~-~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~li  307 (331)
T d1pffa_         235 EIAKKQMK---MFGSMIAFDVDGLEKAKKVLDNCHV---VS-LAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLI  307 (331)
T ss_dssp             HHHHHHCS---SCCSEEEEECSSHHHHHHHHHTCSS---SE-ECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEE
T ss_pred             HHHhhccc---ccCcccceeeccHHHHHHHHHhCCc---ce-ecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeE
Confidence            99999887   7899999999988889999999986   33 79999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          419 RMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       419 RiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      |||+| .|+++|+|++|.+||+++
T Consensus       308 RlsvG-lE~~~DLi~Dl~~AL~~i  330 (331)
T d1pffa_         308 RLSVG-CENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             EEECC-SSCHHHHHHHHHHHHHTC
T ss_pred             EEEee-eCCHHHHHHHHHHHHHHh
Confidence            99999 999999999999999875

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-33  Score=279.01  Aligned_cols=336  Identities=15%  Similarity=0.168  Sum_probs=246.5

Q ss_pred             cccCccccCC-HHHHHHhhcCCCCCCC-CCccccCCCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHh
Q 013079           63 EASATFTVME-PETMRRMFAGELGPDR-DFFIYSRHFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        63 ~~att~~~~~-~~~~~~~~~~~~~n~~-~~~~y~r~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l  137 (450)
                      ++++++..+. .+++.++++..++||. +.|..++.....++++|+.||+++|+   +.++||++   +|++++.++.++
T Consensus        28 ~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~---~T~~~~~~~~~~  104 (405)
T d1jf9a_          28 SAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRG---TTEGINLVANSW  104 (405)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESS---HHHHHHHHHHHH
T ss_pred             CccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCc---HHHHHHHHHhcc
Confidence            3456655555 4888888888899986 56888887778899999999999984   46899999   999999888763


Q ss_pred             ----ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCH
Q 013079          138 ----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANI  208 (450)
Q Consensus       138 ----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l  208 (450)
                          ..+||+|++++.+|++....+..+..+ .|+++.+++.+     |++.+++++ +++|++|++++++|.||.++|+
T Consensus       105 ~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~-~g~~v~~~~~~~~g~~~~~~~~~~i-~~~t~lv~~~~v~~~tG~~~pi  182 (405)
T d1jf9a_         105 GNSNVRAGDNIIISQMEHHANIVPWQMLCAR-VGAELRVIPLNPDGTLQLETLPTLF-DEKTRLLAITHVSNVLGTENPL  182 (405)
T ss_dssp             HHHHCCTTCEEEEETTCCGGGTHHHHHHHHH-HTCEEEEECBCTTSCBCGGGHHHHC-CTTEEEEEEESBCTTTCCBCCH
T ss_pred             cccccCCCCEEEEEeCcccchHHHHHHHHHH-cCcEEEEECCCCCCcCCHHHHHHhc-cCCcEEEEEecCCCcccccCch
Confidence                478999999999999988888655454 79999999754     788899988 8999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh--------
Q 013079          209 PELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG--------  278 (450)
Q Consensus       209 ~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~--------  278 (450)
                      ++|+++||++|+++++|.+|  +.+.++..++++|+++.|+||++||+|  + |+++.++++.+.+.....+        
T Consensus       183 ~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G--~-g~l~v~~~~~~~~~~~~~~~~~~~~~~  259 (405)
T d1jf9a_         183 AEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--I-GILYVKEALLQEMPPWEGGGSMIATVS  259 (405)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSS--C-EEEEECHHHHTTCCCSSCSSSSEEECC
T ss_pred             HHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCC--c-eeeeechhhhcccCcccccccccCccc
Confidence            99999999999999999998  556677778899999999999999888  5 8888888766543211000        


Q ss_pred             ----------hhhccCCCchHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHH
Q 013079          279 ----------ALMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLK  342 (450)
Q Consensus       279 ----------~~~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~  342 (450)
                                ......++........+...++.     .+...++...+.+++.+.++..+. ....|.           
T Consensus       260 ~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~-----------  328 (405)
T d1jf9a_         260 LSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-----------  328 (405)
T ss_dssp             TTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT-----------
T ss_pred             cccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCc-----------
Confidence                      00111223333222222222222     222223345555666667766665 333332           


Q ss_pred             HHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEe
Q 013079          343 SMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSV  422 (450)
Q Consensus       343 ~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~  422 (450)
                             ..+++++|.+++.+ ...+...|..   +| |.++.|+.|+...              ...+++ ++.||||+
T Consensus       329 -------~r~~ivsf~~~~~~-~~~~~~~L~~---~g-I~v~~G~~c~~~~--------------~~~~~~-~g~iRiS~  381 (405)
T d1jf9a_         329 -------NRLGVIAFNLGKHH-AYDVGSFLDN---YG-IAVRTGHHCAMPL--------------MAYYNV-PAMCRASL  381 (405)
T ss_dssp             -------TCCSEEEEEETTCC-HHHHHHHHHH---TT-EECEEECTTCHHH--------------HHHTTC-SCEEEEEC
T ss_pred             -------CcCcEEEEEcCCCC-HHHHHHHHHH---CC-cEEEccchhhhhH--------------HHhcCC-CCEEEEEC
Confidence                   24679999998543 3445555554   33 7899998875421              122333 58899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhc
Q 013079          423 GYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       423 g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      | ..+++++|+.|.++|+++.+.
T Consensus       382 ~-~ynt~eDid~l~~~l~~i~r~  403 (405)
T d1jf9a_         382 A-MYNTHEEVDRLVTGLQRIHRL  403 (405)
T ss_dssp             C-TTCCHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCCHHHHHHHHHHHHHHHHh
Confidence            9 999999999999999988764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-32  Score=273.96  Aligned_cols=341  Identities=17%  Similarity=0.155  Sum_probs=236.9

Q ss_pred             ccc---ccCccccCCH-HHHHHhhcC--CCCCCCC-CccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHH
Q 013079           61 SIE---ASATFTVMEP-ETMRRMFAG--ELGPDRD-FFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAIS  131 (450)
Q Consensus        61 pi~---~att~~~~~~-~~~~~~~~~--~~~n~~~-~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~  131 (450)
                      |||   +++|+..+.+ ++|.++++.  .|+||.+ .|..++.....++++|+.+|+++|++  +++||+|   +|++++
T Consensus         3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~---~t~~l~   79 (391)
T d1p3wa_           3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG---ATESDN   79 (391)
T ss_dssp             SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS---HHHHHH
T ss_pred             eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECC---HHHHHH
Confidence            566   7788877764 888888753  4788865 57777777788999999999999985  6899999   999999


Q ss_pred             HHHHHh----ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCc
Q 013079          132 SVLMQL----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPT  202 (450)
Q Consensus       132 ~al~~l----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~Npt  202 (450)
                      .++.++    .++||+|++++++|+++...+.. ... .|+++..++.+     |++++++++ +++|++|++++++|+|
T Consensus        80 ~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~-~~~-~G~~v~~v~~~~~~~~d~~~~~~~i-~~~T~lv~is~~~n~t  156 (391)
T d1p3wa_          80 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LER-EGFEVTYLAPQRNGIIDLKELEAAM-RDDTILVSIMHVNNEI  156 (391)
T ss_dssp             HHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHH-HHH-TTCEEEEECCCTTSCCCHHHHHHHC-CTTEEEEECCSBCTTT
T ss_pred             HHHhhhhhhhcCCCCEEEEeccccchHHHHHHH-HHH-cCCEEEEeCCCCCCeEcHHHHHHhC-CCCcEEEEEECCCCCC
Confidence            988765    47899999999999998877643 333 58999999865     799999999 9999999999999999


Q ss_pred             ccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh
Q 013079          203 LAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL  280 (450)
Q Consensus       203 G~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~  280 (450)
                      |.+.|+++|+++||++|+++++|++|  +...++....++|+++.|.+|++|++|  + |+++.+++..........++.
T Consensus       157 G~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g--~-g~~~~~~~~~~~~~~~~~gg~  233 (391)
T d1p3wa_         157 GVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKG--I-GALYVRRKPRVRIEAQMHGGG  233 (391)
T ss_dssp             CCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSS--C-EEEEECBTTBCCCCCSSCSSC
T ss_pred             eeECCHHHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCc--e-EEEEEecchhcccCCcccCCc
Confidence            99999999999999999999999998  545567777899999999999999887  4 777666554332211111100


Q ss_pred             ----hccCCCchHHHHHH--HHc-cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCc
Q 013079          281 ----MLLGPTMNPKVAFE--LSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGG  353 (450)
Q Consensus       281 ----~~~g~~~~~~~a~~--~~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~  353 (450)
                          ...+.......+.+  ... ..+......++..+++..+.+.|.+++........+.               +...
T Consensus       234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---------------~~~~  298 (391)
T d1p3wa_         234 HERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH---------------GAPN  298 (391)
T ss_dssp             TTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTT---------------SCTT
T ss_pred             cccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccc---------------cCce
Confidence                11222222222211  111 1122333344556666677777766655332222111               2445


Q ss_pred             EEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCC----CeEEEEeCCCCCHH
Q 013079          354 LLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISA----GLVRMSVGYLGTLD  429 (450)
Q Consensus       354 ~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~----~~iRiS~g~~~~~~  429 (450)
                      +++|.++... ...+...|..      ++++.|+.|+......+        ..+..+|+++    +.||||+| ..++.
T Consensus       299 ~~~~~~~~~~-~~~~~~~l~~------i~v~~G~~c~~~~~~~~--------~~l~~~g~~~~~~~g~iRiS~~-~~nt~  362 (391)
T d1p3wa_         299 ILNVSFNYVE-GESLIMALKD------LAVSSGSACTSASLEPS--------YVLRALGLNDELAHSSIRFSLG-RFTTE  362 (391)
T ss_dssp             EEEEEETTSC-HHHHHHHTTT------EECBCCCC------CCC--------HHHHHHTCCHHHHHTEEEEECC-TTCCH
T ss_pred             EEEEEeCCCC-hHHHHHHhCC------CEEEccccccCCccchh--------HHHHHcCCCccccCCEEEEecC-CCCCH
Confidence            8888888543 5567777764      78899988765332222        2344456543    68999999 87666


Q ss_pred             HHHHHHHHHHHH
Q 013079          430 QRWSQFEKALSR  441 (450)
Q Consensus       430 ~~i~~l~~al~~  441 (450)
                      ++++.|.++|++
T Consensus       363 edid~l~~~l~~  374 (391)
T d1p3wa_         363 EEIDYTIELVRK  374 (391)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666655554

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.98  E-value=1.2e-31  Score=267.62  Aligned_cols=339  Identities=16%  Similarity=0.149  Sum_probs=248.5

Q ss_pred             cccCccccCC-HHHHHHhhcCCCCCC-CCCccccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHh
Q 013079           63 EASATFTVME-PETMRRMFAGELGPD-RDFFIYSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQL  137 (450)
Q Consensus        63 ~~att~~~~~-~~~~~~~~~~~~~n~-~~~~~y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l  137 (450)
                      ++++|++.+. .+++.++++..++|| ++.|.+++.....++++|+.+|+++|++   .+++|++   +++++++++.++
T Consensus        28 ~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~---tt~~~n~~~~~~  104 (408)
T d1t3ia_          28 NAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRN---ATEAINLVAYSW  104 (408)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESS---HHHHHHHHHHHT
T ss_pred             CccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecc---hHHHHHHHHhhc
Confidence            4577765555 488999898889998 4578899888889999999999999974   3789999   999999988763


Q ss_pred             ----ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCH
Q 013079          138 ----CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANI  208 (450)
Q Consensus       138 ----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l  208 (450)
                          .++|++|++++.+|++....+.....+ .|.++.+++.+     +.+.+++++ +++|++|++.+.+|.||.++|+
T Consensus       105 ~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~l~~~~-~~~t~lv~i~~~~~~tG~~~p~  182 (408)
T d1t3ia_         105 GMNNLKAGDEIITTVMEHHSNLVPWQMVAAK-TGAVLKFVQLDEQESFDLEHFKTLL-SEKTKLVTVVHISNTLGCVNPA  182 (408)
T ss_dssp             HHHHCCTTCEEEEETTCCGGGTHHHHHHHHH-HCCEEEEECBCTTSSBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCH
T ss_pred             cccccCCCCEEEeecccchhhhhhhhhhhhc-cCceEeeeeccccccccHHHhhhcc-CCCceEEEEecccccccccCcH
Confidence                468999999999999988877654444 68888888754     789999998 8999999999999999999999


Q ss_pred             HHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh-------
Q 013079          209 PELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-------  279 (450)
Q Consensus       209 ~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------  279 (450)
                      ++|.++|+++|+++|+|.+|  +.+.++..++++|+++.|+||++||+|  + |+++.+++....+.....++       
T Consensus       183 ~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G--~-g~l~v~~~~~~~~~p~~~g~~~~~~~~  259 (408)
T d1t3ia_         183 EEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTG--I-GFLYGKEEILEAMPPFFGGGEMIAEVF  259 (408)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTT--C-EEEEECHHHHHHSCCCSCSTTSEEEEC
T ss_pred             HHHhhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCC--c-cccccchhhhhcCCceecCCccccccc
Confidence            99999999999999999998  666777778899999999999999887  4 88888887765432111110       


Q ss_pred             ----------hhccCCCchHHHHHHHHccCCc-----HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHH
Q 013079          280 ----------LMLLGPTMNPKVAFELSERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKS  343 (450)
Q Consensus       280 ----------~~~~g~~~~~~~a~~~~~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~  343 (450)
                                .....++........+...++.     .+...++..++.+++.+.+.+.+. .+..|....         
T Consensus       260 ~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---------  330 (408)
T d1t3ia_         260 FDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKH---------  330 (408)
T ss_dssp             SSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGG---------
T ss_pred             ccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccc---------
Confidence                      0011223222222222222222     222233446677788888887765 555443110         


Q ss_pred             HhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079          344 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG  423 (450)
Q Consensus       344 ~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g  423 (450)
                           ...+++++|.+++.+ ...+...|..   .| |.++.|++|+...+              ..++. .+.||||++
T Consensus       331 -----~~~~~iv~f~~~~~~-~~~v~~~L~~---~g-I~v~~G~~c~~~~~--------------~~~~~-~g~vRiS~~  385 (408)
T d1t3ia_         331 -----GDRAALASFNVAGLH-ASDVATMVDQ---DG-IAIRSGHHCTQPLH--------------RLFDA-SGSARASLY  385 (408)
T ss_dssp             -----SCBCSEEEEEETTBC-HHHHHHHHHT---TT-EECBCSCTTCHHHH--------------HHTTC-CCCEEEECC
T ss_pred             -----cCcceEEEEEeCCCC-HHHHHHHHhh---CC-cEEecCcccccHHH--------------HhhcC-CccEEEECC
Confidence                 124679999998543 4556666664   33 78899988753111              11222 478999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh
Q 013079          424 YLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       424 ~~~~~~~~i~~l~~al~~~~~  444 (450)
                       ..+++++|+.|.++|+++.+
T Consensus       386 -~ynt~~did~li~~L~~~~~  405 (408)
T d1t3ia_         386 -FYNTKEEIDLFLQSLQATIR  405 (408)
T ss_dssp             -TTCCHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHH
Confidence             99999999999999988754

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.97  E-value=1.5e-30  Score=258.01  Aligned_cols=283  Identities=18%  Similarity=0.230  Sum_probs=199.0

Q ss_pred             HHHHHHHHHH----hC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079          102 LNLSRQMAAL----EG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus       102 ~~l~~~iA~l----~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      .++|+.||+.    .|    .+++++|+|   +++|+.+++.+++++||.|++++|.|+.+...+.     ..|..+..+
T Consensus        70 ~~lR~aia~~~~~~~g~~~~~~~i~it~G---~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~-----~~~~~~v~~  141 (388)
T d1j32a_          70 PRLREAIAQKLQRDNGLCYGADNILVTNG---GKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVK-----LAEGTPVIL  141 (388)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHH-----HTTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcccCCCCceEEEcCC---HHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH-----HhcCeEEEE
Confidence            3455555554    34    357899999   9999999999999999999999999999988775     245555555


Q ss_pred             CCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCccC------
Q 013079          174 DIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR------  237 (450)
Q Consensus       174 ~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~~------  237 (450)
                      +.+       |++++++++ +++++++++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++...      
T Consensus       142 ~~~~~~~~~~d~~~l~~~~-~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~  220 (388)
T d1j32a_         142 PTTVETQFKVSPEQIRQAI-TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGA  220 (388)
T ss_dssp             CCCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred             ecccccccCCCHHHHHHhC-CCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHH
Confidence            542       899999999 889999999999999999976   778888999999999999999665543211      


Q ss_pred             C-----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHHHHHHHHH
Q 013079          238 L-----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCH  311 (450)
Q Consensus       238 ~-----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~~~~~  311 (450)
                      .     +..+++.|+||.++.+|+|+ ||+++++++++.+....... ....+...+.++..... ..+++.+..+.+++
T Consensus       221 ~~~~~~~~~i~~~S~SK~~~~~GlRv-G~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~  298 (388)
T d1j32a_         221 ASPEAYERSVVCSGFAKTYAMTGWRV-GFLAGPVPLVKAATKIQGHS-TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAE  298 (388)
T ss_dssp             SCHHHHHTEEEEEESTTTTTCTTTCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred             hCcccccceeEecCChhhhhcchhHe-EEEEECHHHHHHHHHhhhhc-cccccHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence            1     35799999999999999999 99999999998887655421 12223333444433333 33456666677888


Q ss_pred             HHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccccc
Q 013079          312 RALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       312 ~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      +++.+.+.|++++ ..+..|.                   .|.++|++++. ......|...|..  +.| +.+..|+..
T Consensus       299 ~~~~~~~~l~~~~g~~~~~p~-------------------gg~~l~~~l~~~~~~~~~~~~~ll~--~~g-V~v~pG~~F  356 (388)
T d1j32a_         299 RRRYMLDALNAMPGLECPKPD-------------------GAFYMFPSIAKTGRSSLDFCSELLD--QHQ-VATVPGAAF  356 (388)
T ss_dssp             HHHHHHHHHHTCTTCBCCCCC-------------------BTTEECCBCGGGTCCHHHHHHHHHH--HHC-EECEEGGGG
T ss_pred             HHHHHHHHHHhCCCCEecCCC-------------------ceEEEEEECCCCCCCHHHHHHHHHH--hCC-EEEEecccc
Confidence            9999999998874 3444332                   56788888862 1223345544422  123 455555331


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHH
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSR  441 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~  441 (450)
                                            | .+++||||++ ..  +.++.+++|.++|+.
T Consensus       357 ----------------------~-~~~~~Rls~~-~~~e~l~~al~rl~~~l~~  386 (388)
T d1j32a_         357 ----------------------G-ADDCIRLSYA-TDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             ----------------------T-CTTBEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------C-CCCeEEEEEe-CCHHHHHHHHHHHHHHHHH
Confidence                                  1 1478999999 52  233444555555544

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=1.4e-29  Score=250.47  Aligned_cols=281  Identities=23%  Similarity=0.287  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..+||+.||+.+    +    ++++++|+|   +++|+..++.+++++||.|+++.|.|+++...+.     ..|.++..
T Consensus        70 ~~~lR~~ia~~~~~~~~~~~~~~~i~it~G---~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~-----~~g~~~~~  141 (382)
T d1b5pa_          70 IPELREALAEKFRRENGLSVTPEETIVTVG---GSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVR-----FAGGVVVE  141 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEE
T ss_pred             CHHHHHHHHhhhhhhcccccccccceecCC---HHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHH-----HhcCeEEE
Confidence            345666666654    3    367999999   9999999999999999999999999999988775     35777777


Q ss_pred             eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----C
Q 013079          173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----R  237 (450)
Q Consensus       173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-----~  237 (450)
                      ++.+       |++++++++ +++++++++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++..     .
T Consensus       142 v~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~  220 (382)
T d1b5pa_         142 VETLPEEGFVPDPERVRRAI-TPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGR  220 (382)
T ss_dssp             EECCGGGTTCCCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGG
T ss_pred             EecccccccCCCHHHHHHhC-CCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHH
Confidence            6532       899999988 889999999999999999965   77899999999999999999976654321     1


Q ss_pred             C--CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCC----cHHHHHHHHHH
Q 013079          238 L--GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIP----HLGLRMKEHCH  311 (450)
Q Consensus       238 ~--g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~----~l~~~~~~~~~  311 (450)
                      .  ...+++.|+||.++.+|+|+ ||+++++++++.+....... ....+.+.+..+...+....    ++....+.+..
T Consensus       221 ~~~~~~i~~~s~SK~~~~~GlR~-G~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (382)
T d1b5pa_         221 VAPEHTLTVNGAAKAFAMTGWRI-GYACGPKEVIKAMASVSRQS-TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRR  298 (382)
T ss_dssp             TCTTTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEecchhhccCcHhhe-EEEEECHHHHHHHHHHHHhc-ccCcccccccccccccccccchhHHHHHHHHHHHh
Confidence            1  46799999999999999999 99999999998887665521 12222233333333222211    22333445677


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      +++.+.+.+...+..+..|.                   .|.++|++++. ..+...+.+.+...   | +.+..|+.+ 
T Consensus       299 ~~~~~~~~l~~~g~~~~~p~-------------------gg~~~~~~~~~~~~~~~~~~~~l~e~---g-V~v~PG~~F-  354 (382)
T d1b5pa_         299 RRDLLLEGLTALGLKAVRPS-------------------GAFYVLMDTSPIAPDEVRAAERLLEA---G-VAVVPGTDF-  354 (382)
T ss_dssp             HHHHHHHHHHHHTCCBCCCS-------------------BTTEEEEECTTTCSSHHHHHHHHHHT---T-EECEESGGG-
T ss_pred             hhhHHHHHHhhcCCeEecCC-------------------ceEEEeEeCCCCCCCHHHHHHHHHHC---C-EEEEeCccc-
Confidence            78888888888776655443                   57789999852 11244555555542   3 565555332 


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                                           + .++.+|||++ ..  ++   .|+++++++.+
T Consensus       355 ---------------------~-~~~~iRis~~-~~--~e---~l~~al~rl~~  380 (382)
T d1b5pa_         355 ---------------------A-AFGHVRLSYA-TS--EE---NLRKALERFAR  380 (382)
T ss_dssp             ---------------------T-CTTEEEEECC-SC--HH---HHHHHHHHGGG
T ss_pred             ---------------------C-CCCeEEEEEc-CC--HH---HHHHHHHHHHH
Confidence                                 1 1478999999 53  22   45566666654

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=9.9e-30  Score=251.91  Aligned_cols=286  Identities=16%  Similarity=0.184  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHhC---------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALEG---------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~g---------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..+||+.||+.++         .+.+++|+|   +++++.+++.+++++||+|+++.|.|..+...+.     ..|.++.
T Consensus        64 ~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G---~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~  135 (388)
T d1gdea_          64 LLELREAIAEKLKKQNGIEADPKTEIMVLLG---ANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVI-----LAGGKPV  135 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEESS---TTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHH-----HHTCEEE
T ss_pred             CHHHHHHHHHHHHhhccccCCChheeeeccC---cchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHH-----HcCCEEE
Confidence            4566777776542         246899999   9999999999999999999999999999988875     3577777


Q ss_pred             EeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc------
Q 013079          172 FVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP------  235 (450)
Q Consensus       172 ~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~------  235 (450)
                      .++.+       |+++|++++ +++++++++++||||||.+.+   +++|+++|+++++++|+||+|..+.+..      
T Consensus       136 ~~~~~~~~~~~~d~~~l~~~~-~~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~  214 (388)
T d1gdea_         136 EVPTYEEDEFRLNVDELKKYV-TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSI  214 (388)
T ss_dssp             EEECCGGGTTCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCG
T ss_pred             EeecccccCCCCCHHHHHHhC-ccCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCCh
Confidence            76642       899999999 889999999999999999975   7789999999999999999996654321      


Q ss_pred             cC----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC---CcHHHHHHH
Q 013079          236 AR----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMKE  308 (450)
Q Consensus       236 ~~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~~  308 (450)
                      ..    .+..+++.|+||.++.+|+|+ ||++++++++..+....... ....+...+..+..++...   +++....+.
T Consensus       215 ~~~~~~~~~~i~~~S~SK~~~~~GlR~-G~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  292 (388)
T d1gdea_         215 ASLDGMFERTITVNGFSKTFAMTGWRL-GFVAAPSWIIERMVKFQMYN-ATCPVTFIQYAAAKALKDERSWKAVEEMRKE  292 (388)
T ss_dssp             GGSTTCGGGEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhccCCCCeEEEEeCChhhccCccccE-EEEEeeccchhhhhhccccc-cccccccchhhHHHHHhhccchhHHHHHHHH
Confidence            11    146799999999999999999 99999999888887665521 1222223333333333321   223344455


Q ss_pred             HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccccc
Q 013079          309 HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGY  387 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~  387 (450)
                      +.+++..+.+.|...+..+..|.                   .|.++|+++++ ......|.+.+..  +.| +.+..|+
T Consensus       293 ~~~~~~~~~~~l~~~~~~~~~p~-------------------gg~fl~~~l~~~~~~~~~~~~~ll~--e~g-V~v~PG~  350 (388)
T d1gdea_         293 YDRRRKLVWKRLNEMGLPTVKPK-------------------GAFYIFPRIRDTGLTSKKFSELMLK--EAR-VAVVPGS  350 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC-------------------BTTEECCBCGGGTCCHHHHHHHHHH--HTC-EECEEGG
T ss_pred             HHHhhhhhhhhhhhccccccCCC-------------------ceEEEEEECCCCCCCHHHHHHHHHH--hCC-EEEEech
Confidence            67778888888888766544442                   56788888862 2234556555422  123 4555553


Q ss_pred             ccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHH
Q 013079          388 YETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSR  441 (450)
Q Consensus       388 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~  441 (450)
                      .+..                     ..++++|||+| ..  +.++.+++|.++|++
T Consensus       351 ~F~~---------------------~~~~~iRis~~-~~~e~l~~al~rL~~~l~e  384 (388)
T d1gdea_         351 AFGK---------------------AGEGYVRISYA-TAYEKLEEAMDRMERVLKE  384 (388)
T ss_dssp             GGCG---------------------GGTTBEEEECC-SCHHHHHHHHHHHHHHHHH
T ss_pred             hhCC---------------------CCCCEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence            3210                     01578999999 52  223334444444443

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2e-28  Score=240.81  Aligned_cols=266  Identities=19%  Similarity=0.200  Sum_probs=199.8

Q ss_pred             HHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC---
Q 013079          101 VLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---  175 (450)
Q Consensus       101 ~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---  175 (450)
                      ..+||+.||+.++.  +++++|+|   ++++++.++.+++.+||.|+++.|+|+.+...+..     .|..+..++.   
T Consensus        63 ~~elr~aiA~~~~~~~~~Iiit~G---~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~-----~g~~~~~~~~~~~  134 (368)
T d1v2da_          63 LPALREALAEEFAVEPESVVVTSG---ATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFL-----AGAKARLVRLDLT  134 (368)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEEEECEEE
T ss_pred             CHHHHHHHHhhcccCCcceeeccc---hHHHHHHHhhccccccccccccCCcchhhhhHHHh-----cCCccceeccccc
Confidence            56899999999985  56899999   99999999999999999999999999999887752     4545544433   


Q ss_pred             -----CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-------CCCC
Q 013079          176 -----SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-------RLGA  240 (450)
Q Consensus       176 -----~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-------~~g~  240 (450)
                           .|++.+++++ +++++++++++||||||.+.+   +++|+++|+++|+++|+|++|..+.....       ....
T Consensus       135 ~~~~~~d~~~l~~~~-~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~  213 (368)
T d1v2da_         135 PEGFRLDLSALEKAL-TPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPER  213 (368)
T ss_dssp             TTEEECCHHHHHTTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTT
T ss_pred             cccccCCHHHHHHhh-ccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccc
Confidence                 2899999999 889999999999999999986   77899999999999999999854432211       1146


Q ss_pred             eEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc---cCCcHHHHHHHHHHHHHHHH
Q 013079          241 DVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE---RIPHLGLRMKEHCHRALIFA  317 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~---~~~~l~~~~~~~~~~~~~l~  317 (450)
                      .+++.|+||.++++|+|+ ||++.++++++.+...+... ....+.+.+..+..++.   ..+++....+.++++++.+.
T Consensus       214 ~~~~~~~sk~~~~~G~R~-g~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~  291 (368)
T d1v2da_         214 TFTVGSAGKRLEATGYRV-GWIVGPKEFMPRLAGMRQWT-SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLA  291 (368)
T ss_dssp             EEEEEEHHHHTTCGGGCC-EEEECCTTTHHHHHHHHHHH-TSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             cceeeccccccccccccc-ccccccccccchhhhhhhcc-ccccccccccccccccccccchhhHHHHHHHHHHhhhhhh
Confidence            788899999999999998 99999999988887766521 12233333333333322   33455556666788999999


Q ss_pred             HHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccccc
Q 013079          318 RRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGS  397 (450)
Q Consensus       318 ~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~  397 (450)
                      +.|+++++++..|.                   .|.++|+.+++.+ +.+++++-      | +.+..|+.+...     
T Consensus       292 ~~l~~~g~~~~~p~-------------------g~~~~~~~l~~~~-~~~ll~~~------g-I~v~pg~~F~~~-----  339 (368)
T d1v2da_         292 GGLRAMGLRVYVPE-------------------GTYFLMAELPGWD-AFRLVEEA------R-VALIPASAFYLE-----  339 (368)
T ss_dssp             HHHHHTTCCEECCS-------------------BSSEEEEECTTCC-HHHHHHHT------C-EECEEGGGGCSS-----
T ss_pred             hhHHhcCcEEecCC-------------------ceeEEEEeCCccH-HHHHHHhC------C-EEEEechhhCCC-----
Confidence            99999988776553                   4678999998544 44555432      2 566666554221     


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079          398 STSSELNAEEKALAGISAGLVRMSVG  423 (450)
Q Consensus       398 ~~~~~~~~~~~~~~g~~~~~iRiS~g  423 (450)
                                    +..+++||||++
T Consensus       340 --------------~~~~~~iRis~~  351 (368)
T d1v2da_         340 --------------DPPKDLFRFAFC  351 (368)
T ss_dssp             --------------SCCTTEEEEECC
T ss_pred             --------------CCCCCEEEEEec
Confidence                          112588999999

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.96  E-value=7.1e-30  Score=252.26  Aligned_cols=324  Identities=15%  Similarity=0.155  Sum_probs=226.8

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh-cc
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL-CS  139 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l-~~  139 (450)
                      .++++.... .++|.++++....|+...+..++.....++++|+.+|+++|++  +++||+|   +|+|+++++.++ .+
T Consensus        14 ~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g---~t~a~~~~~~~l~~~   90 (381)
T d1elua_          14 GGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDN---VTTGCDIVLWGLDWH   90 (381)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESS---HHHHHHHHHHHSCCC
T ss_pred             CcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECC---hHHHhhhcchhhhhc
Confidence            344444333 3777777765544444444455555567889999999999974  5899999   999999999988 57


Q ss_pred             CCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHH
Q 013079          140 SGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELS  212 (450)
Q Consensus       140 ~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~  212 (450)
                      +||+|++++++|+++...+.....+ .|+++.+++.+       +.+.+++++ +++|++|++++++|+||.+.|+++|.
T Consensus        91 ~g~~i~~~~~~~~s~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~l~~~i-~~~t~~v~i~~~~n~tG~~~~~~~I~  168 (381)
T d1elua_          91 QGDEILLTDCEHPGIIAIVQAIAAR-FGITYRFFPVAATLNQGDAAAVLANHL-GPKTRLVILSHLLWNTGQVLPLAEIM  168 (381)
T ss_dssp             TTCEEEEETTCCHHHHHHHHHHHHH-HCCEEEEECCGGGSSSSCHHHHHHTTC-CTTEEEEEEESBCTTTCCBCCHHHHH
T ss_pred             CCceEEEeccccceeeecccccccc-ccccccccccccccccchHHHHHHhhh-cccccccccccccccccccchhhHHH
Confidence            8999999999999988877554444 68999998864       245677777 88999999999999999999999999


Q ss_pred             HHHHhc----CCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh-------
Q 013079          213 RLAHDK----GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-------  279 (450)
Q Consensus       213 ~la~~~----gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------  279 (450)
                      ++|+++    ++++++|+++  +...++...+++|+++.|+||++++|.. + |+++.+++..+.+.....++       
T Consensus       169 ~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G-~-g~l~~~~~~~~~~~p~~~~~~~~~~~~  246 (381)
T d1elua_         169 AVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAG-V-GGLYIHGDCLGEINPTYVGWRSITYGA  246 (381)
T ss_dssp             HHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTT-C-EEEEECTTTGGGCCCCSCCTTTEEECT
T ss_pred             HHHhhcccccccccccccccccccccccccccccccccccccccccccch-h-hHHHhhHHHHHhcCccccccccccccc
Confidence            999984    6999999998  4555667777999999999999986543 4 77877766555432110000       


Q ss_pred             -----------hhccCCCchHH---HHHHHH---ccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHH
Q 013079          280 -----------LMLLGPTMNPK---VAFELS---ERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELL  341 (450)
Q Consensus       280 -----------~~~~g~~~~~~---~a~~~~---~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~  341 (450)
                                 .....+++...   ....++   ........+.++..++++++.+.|++++. ++..+..         
T Consensus       247 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---------  317 (381)
T d1elua_         247 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSA---------  317 (381)
T ss_dssp             TSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSC---------
T ss_pred             ccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCC---------
Confidence                       00111122221   111111   12222345566778888999999999865 5543321         


Q ss_pred             HHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE
Q 013079          342 KSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS  421 (450)
Q Consensus       342 ~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS  421 (450)
                              ..+++++|.+++....+.+...|+..   | +.++.-                         + .++.||||
T Consensus       318 --------~~~~~vsf~~~~~~~~~~i~~~L~~~---g-i~v~~~-------------------------~-~~~~lRis  359 (381)
T d1elua_         318 --------PQAGLVSFTVDSPLGHRAIVQKLEEQ---R-IYLRTI-------------------------A-DPDCIRAC  359 (381)
T ss_dssp             --------CSSSEEEEEECSSSCHHHHHHHHHHT---T-EECEEE-------------------------T-TTTEEEEE
T ss_pred             --------ccccEEEEEcCCCCCHHHHHHHHHhC---C-cEEEec-------------------------C-CCCEEEEe
Confidence                    24669999987543345566666642   3 343210                         0 14789999


Q ss_pred             eCCCCCHHHHHHHHHHHHHHh
Q 013079          422 VGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       422 ~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ++ ..++.++++.|.++|+++
T Consensus       360 ~~-~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         360 CH-YITDEEEINHLLARLADF  379 (381)
T ss_dssp             CC-TTCCHHHHHHHHHHHTTC
T ss_pred             cC-CCCCHHHHHHHHHHHHhh
Confidence            99 888899999999988765

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=5.8e-29  Score=245.30  Aligned_cols=339  Identities=15%  Similarity=0.158  Sum_probs=231.0

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh---
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL---  137 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l---  137 (450)
                      ++++++.+. .+++.+++++.++||.+.|.+++.....++++|+.+|+++|++  +++|++|   +|++++.++..+   
T Consensus         8 a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~---~T~~l~~~~~~~~~~   84 (376)
T d1eg5a_           8 NATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSC---ATESINWILKTVAET   84 (376)
T ss_dssp             TTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESC---HHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECC---HHHHHHhhhhccccc
Confidence            455565555 4899999999999999989898888888999999999999985  6899999   999999988643   


Q ss_pred             -ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHH
Q 013079          138 -CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPEL  211 (450)
Q Consensus       138 -~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I  211 (450)
                       ..+|+.|++....|+.+...++ ...+ .|+++++++.+     |++++++++ +++|++|++++++|+||.+.|++++
T Consensus        85 ~~~~g~~v~~~~~~~~~~~~~~~-~~~~-~g~~v~~vp~~~~~~id~~~l~~~i-~~~t~lv~is~v~~~tG~~~~~~~i  161 (376)
T d1eg5a_          85 FEKRKRTIITTPIEHKAVLETMK-YLSM-KGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSIMAANNEVGTIQPVEDV  161 (376)
T ss_dssp             TTTTCCEEEECTTSCHHHHHHHH-HHHH-TTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred             ccccCcccccccccchhhHHHHH-HHHh-cCCEEEEEcCCCCCeECHHHHHHhc-CCCceEEEEECCccccceeeeehhh
Confidence             4667888888888887777664 3333 58999998764     799999999 9999999999999999999999999


Q ss_pred             HHHHHhc--CCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh----hhcc
Q 013079          212 SRLAHDK--GVTVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA----LMLL  283 (450)
Q Consensus       212 ~~la~~~--gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~----~~~~  283 (450)
                      .++++.+  ++++++|++|  +.+..+..++++|+++.|+||++|++|.   |+++.+++..  +.....++    ....
T Consensus       162 ~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~---~~l~~~~~~~--~~p~~~g~~~~~~~~~  236 (376)
T d1eg5a_         162 TRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGV---GITYIRKGVP--IRPLIHGGGQERGLRS  236 (376)
T ss_dssp             HHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTC---EEEEECTTSC--CCCSBCSSCTTTTTBC
T ss_pred             hhhhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCc---eeEEeccCcc--cCCcccCCCCcccccC
Confidence            9998654  9999999998  6666777788999999999999999883   5554443311  11111000    0011


Q ss_pred             CCCchHHH--HHHHHc-cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          284 GPTMNPKV--AFELSE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       284 g~~~~~~~--a~~~~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      +.......  +..... .................++.+.|......+..+...                ....++.+.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------------~~~~~~~~~~~  300 (376)
T d1eg5a_         237 GTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI----------------SLPNTLSVSFP  300 (376)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS----------------BCTTEEEEECT
T ss_pred             CcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccccccccccccc----------------cccceeeeccC
Confidence            11111111  111111 111122233334556667777777665544333211                12347888888


Q ss_pred             CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCC----CCeEEEEeCCCCCHHHHHHHHH
Q 013079          361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGIS----AGLVRMSVGYLGTLDQRWSQFE  436 (450)
Q Consensus       361 ~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~----~~~iRiS~g~~~~~~~~i~~l~  436 (450)
                      +.. +..+...|..   .| |.++.|..|.......        .....++|+.    .+.||||++ ..+++++++.+.
T Consensus       301 ~~~-~~~~~~~L~~---~g-I~vr~G~~c~~~~~~~--------~~~l~~~gi~~~~~~~~iRiS~~-~ynt~edid~l~  366 (376)
T d1eg5a_         301 NIR-GSTLQNLLSG---YG-IYVSTSSACTSKDERL--------RHVLDAMGVDRRIAQGAIRISLC-KYNTEEEVDYFL  366 (376)
T ss_dssp             TCC-HHHHHHHHHH---TT-EECBC--------------------CHHHHTTCCHHHHHHEEEEECC-TTCCHHHHHHHH
T ss_pred             CCC-HHHHHHHHhh---CC-eEEeCcchhcCCccch--------hHHHHHcCCCcccCCCEEEEecC-CCCCHHHHHHHH
Confidence            543 4555555654   33 7889997775332221        2234455664    357999999 988899999999


Q ss_pred             HHHHHhh
Q 013079          437 KALSRMQ  443 (450)
Q Consensus       437 ~al~~~~  443 (450)
                      ++|+++-
T Consensus       367 ~~L~~iv  373 (376)
T d1eg5a_         367 KKIEEIL  373 (376)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.96  E-value=5.8e-28  Score=239.74  Aligned_cols=285  Identities=12%  Similarity=0.079  Sum_probs=190.0

Q ss_pred             HHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079          103 NLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus       103 ~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      +||+.||+++    |    .+++++|+|   +++++.+++++++++||+|++..|.|.++...+.     ..|.....++
T Consensus        70 ~Lr~aia~~~~~~~g~~~~~~~I~vt~G---~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~-----~~g~~~v~~~  141 (394)
T d1c7na_          70 EYKKTVKKWMKDRHQWDIQTDWIINTAG---VVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIK-----NQERKIIECE  141 (394)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESS---HHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHH-----TTTCEEEECC
T ss_pred             HHHHHHHHHHHHhcCCCCCCcceEeecc---chhhhhhhhccccccccccccccCcccchhhHHh-----hhhhcccccc
Confidence            5677777664    3    367999999   9999999999999999999999999999988775     2455555444


Q ss_pred             C--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------C
Q 013079          175 I--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------R  237 (450)
Q Consensus       175 ~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------~  237 (450)
                      .        .|.+.++.++..++++++++++||||||.+.+   +++|+++|++++++||+|++|..+.++..      .
T Consensus       142 ~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~  221 (394)
T d1c7na_         142 LLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQS  221 (394)
T ss_dssp             CEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred             cccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhh
Confidence            2        27777877774567999999999999999976   66889999999999999999976654311      1


Q ss_pred             -----CCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCCCch-HHHHH-HHHccC-CcHHHHHHH
Q 013079          238 -----LGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGPTMN-PKVAF-ELSERI-PHLGLRMKE  308 (450)
Q Consensus       238 -----~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~~~~-~~~a~-~~~~~~-~~l~~~~~~  308 (450)
                           ....+++.|+||.++.+|+|+ ||++. ++.+.+.+.......  ...+... ...+. ...... ++..+..+.
T Consensus       222 ~~~~~~~~~i~~~s~SK~~~~~G~R~-g~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  298 (394)
T d1c7na_         222 IDEQLADKTITFTAPSKTFNIAGMGM-SNIIIKNPDIRERFTKSRDAT--SGMPFTTLGYKACEICYKECGKWLDGCIKV  298 (394)
T ss_dssp             SCHHHHTTEEEEECSHHHHTCGGGCC-EEEECCCHHHHHHHHHHHHHT--TCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhcccccceeeccccccccccccccc-ccccccChhhhhhhhhhhhhc--cccccccccchhhhhhhcchhhhhcccccc
Confidence                 146799999999999999999 66555 556666665554411  1222222 22222 222222 234444455


Q ss_pred             HHHHHHHHHHHHHhCCC--eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-HHHHHHHHHHhhcccccccccccc
Q 013079          309 HCHRALIFARRMKKLGL--KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-EEKANRLMNYLQNYAQFGFMAVSL  385 (450)
Q Consensus       309 ~~~~~~~l~~~L~~~~~--~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~  385 (450)
                      +.++++.+.+.|+.++.  .+..|                   ..|.++|++++. ..+...|.+.|..  +.| +.+..
T Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~p-------------------~g~~~~~~~~~~~~~~~~~~~~~Ll~--~~g-V~v~p  356 (394)
T d1c7na_         299 IDKNQRIVKDFFEVNHPEIKAPLI-------------------EGTYLQWIDFRALKMDHKAMEEFMIH--KAQ-IFFDE  356 (394)
T ss_dssp             HHHHHHHHHHHHHHHCTTSBCCCC-------------------SBSSEEEEECGGGCCCHHHHHHHHHH--TTC-CCCEE
T ss_pred             cchhhhhhhhhhhccccceeecCC-------------------CceeEEEEECCCCCCCHHHHHHHHHH--hCC-EEEEc
Confidence            67777777777776533  32222                   246688998873 1124556655532  123 56555


Q ss_pred             ccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013079          386 GYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSRM  442 (450)
Q Consensus       386 G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~~  442 (450)
                      |+....                     -.+++||||++ ..  ++++.+++|.++|+++
T Consensus       357 G~~Fg~---------------------~~~~~iRis~~-~~~e~i~eal~rl~~~l~~L  393 (394)
T d1c7na_         357 GYIFGD---------------------GGIGFERINLA-APSSVIQESLERLNKALKDL  393 (394)
T ss_dssp             GGGGCG---------------------GGTTEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCC---------------------CCCCEEEEEEe-CCHHHHHHHHHHHHHHHHhc
Confidence            543210                     01578999999 52  2445566666666655

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.4e-27  Score=232.50  Aligned_cols=263  Identities=18%  Similarity=0.211  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..+||+.+++++    +    .+.+++|+|   +++|+.+++.+++++||.|++++|.|+.+...+..     .+.....
T Consensus        67 ~~~lR~aia~~~~~~~~~~~~~~~i~~t~G---~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~-----~~~~~~~  138 (375)
T d1o4sa_          67 IYELREGIAKRIGERYKKDISPDQVVVTNG---AKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIIL-----AGGTVNV  138 (375)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEEE
T ss_pred             CHHHHHHHHhhhhhccccccccccccccCc---HHHHHHHHHHHHhCCCCEEEEccCccccchhhhhc-----ccccccc
Confidence            345666666654    3    456899999   99999999999999999999999999998877652     3444444


Q ss_pred             eCCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------
Q 013079          173 VDIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------  235 (450)
Q Consensus       173 v~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-------  235 (450)
                      ++.+       |.+.++... .++++++++++||||||.+.+   +++|+++|++|+++||+|++|..+..+.       
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~  217 (375)
T d1o4sa_         139 VETFMSKNFQPSLEEVEGLL-VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILD  217 (375)
T ss_dssp             EECCGGGTTCCCHHHHHHTC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHH
T ss_pred             ccccccccccchhHHHHHhh-ccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccccccccc
Confidence            4432       778888777 788999999999999999965   7788999999999999999986554321       


Q ss_pred             --cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHH
Q 013079          236 --ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRA  313 (450)
Q Consensus       236 --~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~  313 (450)
                        ...+..+++.|+||.++.+|+|+ ||++++++.++.+...+..   ...................+.....+.+.+++
T Consensus       218 ~~~~~~~~i~~~S~SK~~~l~G~R~-G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  293 (375)
T d1o4sa_         218 VSEGFDRIVYINGFSKSHSMTGWRV-GYLISSEKVATAVSKIQSH---TTSCINTVAQYAALKALEVDNSYMVQTFKERK  293 (375)
T ss_dssp             HCSSSTTEEEEEESTTTTTCGGGCC-EEEECCHHHHHHHHHHHHH---HTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeechhhccCCcccc-ccccccccchhhhhhhhcc---ccccccccchhhhhhhcccchhhhHHHHHHHH
Confidence              12367899999999999999998 9999999988887766552   12222222222222223344455556678888


Q ss_pred             HHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHH-hhccccccccccccccccccc
Q 013079          314 LIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNY-LQNYAQFGFMAVSLGYYETLM  392 (450)
Q Consensus       314 ~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~-l~~~~~~g~i~vs~G~~~s~~  392 (450)
                      +.+.+.|++.++.+..|.                   .|.++|++++..+ . ++... +..   .| +.+..|+.+   
T Consensus       294 ~~~~~~l~~~g~~~~~p~-------------------gg~f~~~~~~~~~-~-~~~~~ll~~---~g-V~v~pG~~F---  345 (375)
T d1o4sa_         294 NFVVERLKKMGVKFVEPE-------------------GAFYLFFKVRGDD-V-KFCERLLEE---KK-VALVPGSAF---  345 (375)
T ss_dssp             HHHHHHHHHTTCCCCCCS-------------------BSSEEEEECSSCH-H-HHHHHHHHH---HC-EECEEGGGG---
T ss_pred             HHHHHHHHhcCceEecCC-------------------ccEEEEEECCCCH-H-HHHHHHHHh---CC-EEEEEcccc---
Confidence            999999999887665443                   5678999998532 2 33333 332   23 555555332   


Q ss_pred             cccccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          393 SCSGSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                                         + .+++||||++ .
T Consensus       346 -------------------~-~~g~iRis~~-~  357 (375)
T d1o4sa_         346 -------------------L-KPGFVRLSFA-T  357 (375)
T ss_dssp             -------------------T-CTTEEEEECC-S
T ss_pred             -------------------C-CCCeEEEEEc-C
Confidence                               1 1578999999 5

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=2.1e-27  Score=235.76  Aligned_cols=230  Identities=17%  Similarity=0.152  Sum_probs=168.6

Q ss_pred             HHHHHHHHHH----hCC----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079          102 LNLSRQMAAL----EGT----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus       102 ~~l~~~iA~l----~g~----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      .+||+.||+.    .|.    +++++|+|   +++++.+++.+++.+||.|++++|.|+.+...+.     ..|.++..+
T Consensus        73 ~~LR~aia~~~~~~~g~~~~~~~i~i~~G---~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~-----~~g~~~v~v  144 (395)
T d1xi9a_          73 PELRKAIVEREKRKNGVDITPDDVRVTAA---VTEALQLIFGALLDPGDEILVPGPSYPPYTGLVK-----FYGGKPVEY  144 (395)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----HTTCEEEEE
T ss_pred             HHHHHHHHHhhhhcccccccccccccccc---cchhhhhhhhhhcCCCCEEEEcCCccccchhhhh-----hcCCEEEEE
Confidence            3455555554    443    56899999   9999999999999999999999999999988775     356666665


Q ss_pred             CCC-------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-------
Q 013079          174 DIS-------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-------  236 (450)
Q Consensus       174 ~~~-------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-------  236 (450)
                      +..       |++++++++ .+++++|++++||||||.+.+   +++|+++|++++++++.|++|..+.++..       
T Consensus       145 ~~~~~~~~~~d~~~~~~~~-~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~  223 (395)
T d1xi9a_         145 RTIEEEDWQPDIDDIRKKI-TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSL  223 (395)
T ss_dssp             EEEGGGTSEECHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHH
T ss_pred             eccccccccchHHHHHHhh-cccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhc
Confidence            422       889999988 889999999999999999976   67899999999999999999965544321       


Q ss_pred             -CCCCeEEEeCCCCccccCccceEEEEEc--CHHHHHHHHHHhhh--hhhccCCCchHHHHHHHHc-cCCcHHHHHHHHH
Q 013079          237 -RLGADVVVHSISKFISGGADIIAGAVCG--PANLVNSMMDLHQG--ALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHC  310 (450)
Q Consensus       237 -~~g~di~~~S~sK~~g~~g~~igG~l~~--~~~~~~~l~~~~~~--~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~~~~  310 (450)
                       .....+++.|+||.++++|+|+ ||++.  +...+..+......  ......+.+.+.++...+. ..+++.+..+.++
T Consensus       224 ~~~~~vi~~~S~SK~~~~~GlRv-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~  302 (395)
T d1xi9a_         224 TKDVPVIVMNGLSKVYFATGWRL-GYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLK  302 (395)
T ss_dssp             CSSSCEEEEEESTTTTCCGGGCC-EEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcchhcccchhhc-EeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence             1146799999999999999999 88653  33333333222110  1112344555555544444 3455666777789


Q ss_pred             HHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          311 HRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ++++.+.+.|++++. .+..|.                   .|.++|++++
T Consensus       303 ~~~~~l~~~L~~~~~~~~~~p~-------------------gg~~~~~~l~  334 (395)
T d1xi9a_         303 ERRDYIYKRLNEIPGISTTKPQ-------------------GAFYIFPKIE  334 (395)
T ss_dssp             HHHHHHHHHHHTSTTEECCCCC-------------------BSSEECCEEC
T ss_pred             HHHHHHHHHHHhCCCceecCCC-------------------eeEEEeEECC
Confidence            999999999998865 333332                   5778898886

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.96  E-value=4.4e-27  Score=235.17  Aligned_cols=216  Identities=17%  Similarity=0.207  Sum_probs=166.7

Q ss_pred             CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC---------------CCHH
Q 013079          115 EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHE  179 (450)
Q Consensus       115 ~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---------------~d~~  179 (450)
                      +++++|+|   +++|+.+++++++++||.|+++.|.|+.+...+.     ..|.+++.++.               .+++
T Consensus        91 ~~I~it~G---~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~  162 (418)
T d2r5ea1          91 TEVLVTVG---AYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVK-----AAGGIPRFIPLKPNKTGGTISSADWVLDNN  162 (418)
T ss_dssp             TSEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEESCCSSCEEGGGEECCHH
T ss_pred             ceEEEcCC---CchhhhhhhhhccccccceeccccccchhhHHHH-----HcCCeEEEEEecccccccchhhhhhhhhHH
Confidence            56999999   9999999999999999999999999999988875     25666665543               1678


Q ss_pred             HHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------C----CCCeEEEeC
Q 013079          180 MVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------R----LGADVVVHS  246 (450)
Q Consensus       180 ~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------~----~g~di~~~S  246 (450)
                      ++.... ..+++++++++||||||.+.+   +++|+++|+++++++|+|++|..+.+++.      .    ....+++.|
T Consensus       163 ~~~~~~-~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S  241 (418)
T d2r5ea1         163 ELEALF-NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGS  241 (418)
T ss_dssp             HHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEE
T ss_pred             HHhhhh-hccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeec
Confidence            888877 789999999999999999976   66889999999999999999965543221      1    146799999


Q ss_pred             CCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-------c-CCcHHHHHHHHHHHHHHHHH
Q 013079          247 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-------R-IPHLGLRMKEHCHRALIFAR  318 (450)
Q Consensus       247 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-------~-~~~l~~~~~~~~~~~~~l~~  318 (450)
                      +||.++++|+|+ ||+++++++++.+....... ....+++.+.++...+.       . .+++....+.++.+++.+.+
T Consensus       242 ~SK~~~~pGlRi-G~~~~~~~~i~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~  319 (418)
T d2r5ea1         242 AGKTFSLTGWKI-GWAYGPEALLKNLQMVHQNC-VYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMAS  319 (418)
T ss_dssp             HHHHTTCGGGCC-EEEESCHHHHHHHHHHHTTT-TCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCCccc-ccccccchhhhhhhhccccc-ccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHh
Confidence            999999999999 99999999998887765521 12233333333332221       1 23355556667889999999


Q ss_pred             HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          319 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       319 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      .|++.+..+..|.                   .|.++|++++
T Consensus       320 ~L~~~g~~~~~P~-------------------gg~f~~~~~~  342 (418)
T d2r5ea1         320 FLAEVGMNPTVPQ-------------------GGYFMVADWS  342 (418)
T ss_dssp             HHHHTTCEEEECS-------------------BSSEEEEECG
T ss_pred             hHhhcCCcccCCC-------------------ceeEEEEEcc
Confidence            9999988776664                   6778888874

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7e-27  Score=229.03  Aligned_cols=304  Identities=19%  Similarity=0.141  Sum_probs=196.7

Q ss_pred             HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHH----hC----CCeEEEecChHHHHHHHHHHHHHhccCCCEEE
Q 013079           74 ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAAL----EG----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVV  145 (450)
Q Consensus        74 ~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l----~g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi  145 (450)
                      +++.+.+..      +.+.|+....   .++++.||++    +|    ++++++|+|   +++++.+++.+++++||+|+
T Consensus        19 eal~~~~~~------~~~~Y~~~~g---~~lr~~ia~~~~~~~g~~~~~~~i~it~G---~~~~l~~~~~~l~~~gd~Vl   86 (361)
T d1d2fa_          19 EALNQRLMH------GVFGYSRWKN---DEFLAAIAHWFSTQHYTAIDSQTVVYGPS---VIYMVSELIRQWSETGEGVV   86 (361)
T ss_dssp             HHHHHHHTT------CCCCCCCSCC---HHHHHHHHHHHHHHSCCCCCGGGEEEESC---HHHHHHHHHHHSSCTTCEEE
T ss_pred             HHHHHHHhC------CCCCCCCCCC---HHHHHHHHHHHHHHhCCCCCcceEEEeCC---HHHHHHHHhhhccccccccc
Confidence            555555532      2244554333   2355555554    34    367999999   99999999999999999999


Q ss_pred             EeCCCchhHHHHHHHhCCCccCeeEEEeCC--------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHH
Q 013079          146 AARTLYGGTHALLTHFFPRACNITTTFVDI--------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRL  214 (450)
Q Consensus       146 ~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~--------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~l  214 (450)
                      +++|.|+.+...+.     ..|..+..++.        .|++.+++.+.++++++|++++||||||.+.+   +++|+++
T Consensus        87 v~~P~y~~~~~~~~-----~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~  161 (361)
T d1d2fa_          87 IHTPAYDAFYKAIE-----GNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADL  161 (361)
T ss_dssp             EEESCCHHHHHHHH-----HTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHH
T ss_pred             cccccccchhHHHH-----hhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhh
Confidence            99999999988775     24555554432        28999999886678999999999999999865   8899999


Q ss_pred             HHhcCCEEEEeCCCCCCCCCc--------cCCCCeEEEeCCCCccccCccceEEEEEcC-HHHHHHHHHHhhhhhhccCC
Q 013079          215 AHDKGVTVVVDNTFSPLVLSP--------ARLGADVVVHSISKFISGGADIIAGAVCGP-ANLVNSMMDLHQGALMLLGP  285 (450)
Q Consensus       215 a~~~gi~livD~~~~~~~~~~--------~~~g~di~~~S~sK~~g~~g~~igG~l~~~-~~~~~~l~~~~~~~~~~~g~  285 (450)
                      |+++|+++|+|++|..+.++.        ...+..+++.|+||.++.+|+|+ ||++.+ +.............  ...+
T Consensus       162 ~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~-g~~~~~~~~~~~~~~~~~~~~--~~~~  238 (361)
T d1d2fa_         162 CERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTG-AYGIIENSSSRDAYLSALKGR--DGLS  238 (361)
T ss_dssp             HHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCC-EEEEECSHHHHHHHHHHHHTT--SCCC
T ss_pred             hhhhheeeeecccccccccccccccccccccccccccccccccccccccccc-eeeecchhHHHHHHhhhcccc--cccc
Confidence            999999999999996654321        11245789999999999999998 887554 43433332222211  2222


Q ss_pred             Cch--HHHHHH-HHccCC-cHHHHHHHHHHHHHHHHHHHHhCC--CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEe
Q 013079          286 TMN--PKVAFE-LSERIP-HLGLRMKEHCHRALIFARRMKKLG--LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDM  359 (450)
Q Consensus       286 ~~~--~~~a~~-~~~~~~-~l~~~~~~~~~~~~~l~~~L~~~~--~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l  359 (450)
                      .+.  ...+.. ...... +.......+.++++.+.+.+.+..  ..+..|.                   .|.++|+++
T Consensus       239 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~-------------------gg~~~~~~l  299 (361)
T d1d2fa_         239 SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ-------------------STYLAWLDL  299 (361)
T ss_dssp             SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS-------------------BCSEEEEEC
T ss_pred             cchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccC-------------------ceeEEEEEc
Confidence            222  222222 222222 233344445677777777776542  2333332                   466888888


Q ss_pred             C--CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC--CCHHHHHHHH
Q 013079          360 E--TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL--GTLDQRWSQF  435 (450)
Q Consensus       360 ~--~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~--~~~~~~i~~l  435 (450)
                      +  +. +...|..+|..  +.| +.+..|+.+..   +                  .+++||||++ .  +++++.+++|
T Consensus       300 ~~~~~-~~~~~~~~Ll~--~~g-v~v~pG~~F~~---~------------------~~~~vRis~~-~~~e~l~~al~rl  353 (361)
T d1d2fa_         300 RPLNI-DDNALQKALIE--QEK-VAIMPGYTYGE---E------------------GRGFVRLNAG-CPRSKLEKGVAGL  353 (361)
T ss_dssp             GGGCC-CHHHHHHHHHH--TTC-EECEEGGGGCG---G------------------GTTEEEEECC-SCHHHHHHHHHHH
T ss_pred             cCCCC-CHHHHHHHHHH--hCC-EEEEeccccCC---C------------------CCCEEEEEEc-CCHHHHHHHHHHH
Confidence            5  22 24566666532  234 56665643210   0                  1478999999 6  3345556777


Q ss_pred             HHHHHHh
Q 013079          436 EKALSRM  442 (450)
Q Consensus       436 ~~al~~~  442 (450)
                      .++++++
T Consensus       354 ~~~l~~l  360 (361)
T d1d2fa_         354 INAIRAV  360 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            7777665

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-26  Score=232.28  Aligned_cols=240  Identities=20%  Similarity=0.259  Sum_probs=175.6

Q ss_pred             CCccccCCCChhHHHHHHHHHHH----hCC-----CeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHH
Q 013079           89 DFFIYSRHFNPTVLNLSRQMAAL----EGT-----EAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLT  159 (450)
Q Consensus        89 ~~~~y~r~~~~~~~~l~~~iA~l----~g~-----~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~  159 (450)
                      ..+.|+..  ....+||+.||++    +|.     +++++|+|   +++|+.+++.+++.+||.|+++.|.|+.+...+.
T Consensus        56 ~~~~Y~~~--~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G---~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~  130 (418)
T d1w7la_          56 MLNQYTKT--FGYPPLTKILASFFGELLGQEIDPLRNVLVTVG---GYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTM  130 (418)
T ss_dssp             GGGSCCCT--TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHH
T ss_pred             cccCCCCC--cCCHHHHHHHHHHHHHHhCCCCCcccceeeccC---cHHHHHHHHHhhccCCceeeccccccchhHHHHH
Confidence            34456532  2233455555554    453     35899999   9999999999999999999999999999988775


Q ss_pred             HhCCCccCeeEEEeCC-----------------CCHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcC
Q 013079          160 HFFPRACNITTTFVDI-----------------SDHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKG  219 (450)
Q Consensus       160 ~~~~~~~g~~v~~v~~-----------------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~g  219 (450)
                      .     .|.+++.++.                 .|.+++.... .++++++++++||||||.+.+   +++|+++|++++
T Consensus       131 ~-----~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~  204 (418)
T d1w7la_         131 M-----AGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF-TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHD  204 (418)
T ss_dssp             H-----TTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             H-----cCCEeeccccccccccccccccccCcccchhhhhccc-cccccceeccCcCCcccccccHHHHHHHHHHHHhcC
Confidence            2     4544443331                 1566777766 788999999999999999964   779999999999


Q ss_pred             CEEEEeCCCCCCCCC------ccCC----CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchH
Q 013079          220 VTVVVDNTFSPLVLS------PARL----GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNP  289 (450)
Q Consensus       220 i~livD~~~~~~~~~------~~~~----g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~  289 (450)
                      +++|+|++|..+.++      +..+    ...+++.|+||.++.+|+|+ ||++++++++..+....... ....+.+.+
T Consensus       205 v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~Rv-G~~v~~~~~~~~l~~~~~~~-~~~~~~~~q  282 (418)
T d1w7la_         205 VVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKV-GWVLGPDHIMKHLRTVHQNS-VFHCPTQSQ  282 (418)
T ss_dssp             CEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCC-EEEECCHHHHHHHHHHHHTT-TSCCCHHHH
T ss_pred             CCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcc-cccccchhhhhhhccccccc-cccccchhh
Confidence            999999999666432      1122    35799999999999999999 99999999998887776522 122333344


Q ss_pred             HHHHHHHcc--------CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          290 KVAFELSER--------IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       290 ~~a~~~~~~--------~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      .++..++..        .+++....+.+.++++.+.+.|++.++.+..|.                   .|.++|++++
T Consensus       283 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~P~-------------------gg~f~~~~~~  342 (418)
T d1w7la_         283 AAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQ-------------------GSYFLITDIS  342 (418)
T ss_dssp             HHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS-------------------BSSEEEEECH
T ss_pred             HHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhcCCcccCCC-------------------ceeEEEEECc
Confidence            443333221        233555566788899999999999888776664                   5778998875

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.95  E-value=9.4e-27  Score=232.25  Aligned_cols=253  Identities=15%  Similarity=0.187  Sum_probs=176.6

Q ss_pred             CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhh
Q 013079          114 TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV  186 (450)
Q Consensus       114 ~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~  186 (450)
                      ++++++|+|   +++|+.+++++++++||+|++++|.|+.+...+.     ..|.+++.++.+       +++++++++ 
T Consensus       101 ~~~I~it~G---~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~~~~~~~~~~~~~~l~~~~-  171 (412)
T d1bw0a_         101 KDNVVLCSG---GSHGILMAITAICDAGDYALVPQPGFPHYETVCK-----AYGIGMHFYNCRPENDWEADLDEIRRLK-  171 (412)
T ss_dssp             GGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEEEGGGTTEECHHHHHHHC-
T ss_pred             CCeEEEecc---cccchhhhhhhhhccccceeeeeccchhhhhhhh-----ccCccccccccccccccchhhHHHHhhh-
Confidence            357999999   9999999999999999999999999999988775     367777776642       788999888 


Q ss_pred             cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCccC-------------CCCeEEEeCCCCc
Q 013079          187 QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPAR-------------LGADVVVHSISKF  250 (450)
Q Consensus       187 ~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~~-------------~g~di~~~S~sK~  250 (450)
                      .++++++++++||||||.+.+   +++|+++|+++++++|+|++|..+.++...             ....+++.|+||.
T Consensus       172 ~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~  251 (412)
T d1bw0a_         172 DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKN  251 (412)
T ss_dssp             CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTT
T ss_pred             hccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCcc
Confidence            889999999999999999965   778899999999999999999766543211             1245788999999


Q ss_pred             cccCccceEEEEEcCH------HHHHHHHHHhhhhhhccCCCch-HHHHHHHH-ccC-CcHHHHHHHHHHHHHHHHHHHH
Q 013079          251 ISGGADIIAGAVCGPA------NLVNSMMDLHQGALMLLGPTMN-PKVAFELS-ERI-PHLGLRMKEHCHRALIFARRMK  321 (450)
Q Consensus       251 ~g~~g~~igG~l~~~~------~~~~~l~~~~~~~~~~~g~~~~-~~~a~~~~-~~~-~~l~~~~~~~~~~~~~l~~~L~  321 (450)
                      ++++|+|+ ||+++++      .++........   ...++... +..+.... ... +++....+++.++++.+.+.|.
T Consensus       252 ~~~~G~Rv-G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~  327 (412)
T d1bw0a_         252 LVVPGWRL-GWLLYVDPHGNGPSFLEGLKRVGM---LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG  327 (412)
T ss_dssp             TSCGGGCC-EEEEEECTTCSCHHHHHHHHHHHH---HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCCCCc-ccccccchhhcchhhhhhhccccc---cccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHH
Confidence            99999999 9987653      23333322222   12333322 22222222 222 3455666678889999999997


Q ss_pred             hC-CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC-----HHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          322 KL-GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET-----EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       322 ~~-~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~-----~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      +. +..+..|.                   .|.++++.++.     .....+|.+.|-.  ..| +.+..|+.+      
T Consensus       328 ~~~g~~~~~p~-------------------gg~~l~~~~~~~~~~~~~~~~~~~~~ll~--~~g-V~v~PG~~F------  379 (412)
T d1bw0a_         328 ECIGLAPTMPR-------------------GAMYLMSRIDLEKYRDIKTDVEFFEKLLE--EEN-VQVLPGTIF------  379 (412)
T ss_dssp             TSTTEEECCCC-------------------BTTEEEEEECGGGBSSCCSHHHHHHHHHH--HHC-EECEEGGGG------
T ss_pred             HhcCceecCCC-------------------CceEEEEeCChhhcCCCCCHHHHHHHHHH--hCC-EEEEecccc------
Confidence            75 33544443                   56678888761     1123455555432  123 455555332      


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCC
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYL  425 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~  425 (450)
                                      | .+++||||++ .
T Consensus       380 ----------------g-~~g~iRis~~-~  391 (412)
T d1bw0a_         380 ----------------H-APGFTRLTTT-R  391 (412)
T ss_dssp             ----------------T-CTTEEEEECC-S
T ss_pred             ----------------C-CCCeEEEEEc-C
Confidence                            1 1579999999 5

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.2e-26  Score=225.09  Aligned_cols=268  Identities=15%  Similarity=0.155  Sum_probs=195.9

Q ss_pred             hhHHHHHHHHHHHhC-----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           99 PTVLNLSRQMAALEG-----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g-----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      +...+||+.||++++     .+++++|+|   +++++.++++    +||+|++.+|+|.++...+.     ..|.++..+
T Consensus        56 ~g~~~Lr~aia~~~~~~~v~~d~I~it~G---~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~-----~~g~~~v~v  123 (334)
T d2f8ja1          56 SPDEELIEKILSYLDTDFLSKNNVSVGNG---ADEIIYVMML----MFDRSVFFPPTYSCYRIFAK-----AVGAKFLEV  123 (334)
T ss_dssp             SSCHHHHHHHHHHHTCSSCCGGGEEEEEH---HHHHHHHHHH----HSSEEEECSSCCHHHHHHHH-----HHTCCEEEC
T ss_pred             CCcHHHHHHHHHHhcccCCCcceEEecCc---chhHHHHHhh----hccccccccccccccccchh-----ccCCccccc
Confidence            345679999999875     356899999   9999887665    46999999999999988875     368889898


Q ss_pred             CCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCC-----ccCCCCeEEEeCCC
Q 013079          174 DISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLS-----PARLGADVVVHSIS  248 (450)
Q Consensus       174 ~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~-----~~~~g~di~~~S~s  248 (450)
                      +.++.....++. .++++++++++|+||||.+.+.++|.+++ ++++++|+|++|..+...     ....+..+++.|+|
T Consensus       124 ~~~~~~~~~~~~-~~~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~S  201 (334)
T d2f8ja1         124 PLTKDLRIPEVN-VGEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFS  201 (334)
T ss_dssp             CCCTTSCCCCCC-CCTTEEEEEESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEEST
T ss_pred             cccccccccccc-cccceEEEecccccccceeecHHHhhccc-cceeEEeecccchhhcccccccccccCceEEEEecCc
Confidence            875321222233 57899999999999999999998888765 578999999998333221     12235779999999


Q ss_pred             CccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013079          249 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL  328 (450)
Q Consensus       249 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~  328 (450)
                      |.++.+|+|+ ||+++++++++++...+..   ...+...+..+...+...+++....+.+.++++.+.+.|+++|+++.
T Consensus       202 K~~~~~G~R~-G~~~~~~~~i~~l~~~~~~---~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~  277 (334)
T d2f8ja1         202 KAFSLAAQRV-GYVVASEKFIDAYNRVRLP---FNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMGYRIT  277 (334)
T ss_dssp             TTSSCTTTCE-EEEEECHHHHHHHHHHSCT---TCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEC
T ss_pred             cccchhhhhh-hhcccchHHHHHHHHhhcc---cccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCCCeEC
Confidence            9999999998 9999999999998877651   22233444444444445556667777889999999999999987764


Q ss_pred             CCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHH
Q 013079          329 YPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEK  408 (450)
Q Consensus       329 ~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~  408 (450)
                      .|                    .|+++++.++.. +...+.+.|...   | +.+.-           +           
T Consensus       278 ~~--------------------~g~f~~~~~~~~-~~~~~~~~L~~~---G-I~vr~-----------~-----------  310 (334)
T d2f8ja1         278 DS--------------------RGNFVFVFMEKE-EKERLLEHLRTK---N-VAVRS-----------F-----------  310 (334)
T ss_dssp             CC--------------------CSSEEEEECCHH-HHHHHHHHHHHT---T-EECEE-----------E-----------
T ss_pred             CC--------------------CceEEEEECCCC-CHHHHHHHHHHC---C-CEECC-----------C-----------
Confidence            32                    356788888754 467788887652   2 33310           0           


Q ss_pred             HhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          409 ALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       409 ~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                            +++||||+|   +.+| .++|.++|+.
T Consensus       311 ------~~~vRis~g---~~ee-~~~l~~~l~~  333 (334)
T d2f8ja1         311 ------REGVRITIG---KREE-NDMILRELEV  333 (334)
T ss_dssp             ------TTEEEEECC---CHHH-HHHHHHHHHH
T ss_pred             ------CCeEEEEcC---CHHH-HHHHHHHHhc
Confidence                  378999999   3333 4666666654

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4e-26  Score=225.37  Aligned_cols=286  Identities=16%  Similarity=0.159  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHh----C----CC-eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G----TE-AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~-~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..+||+.||+++    |    .+ .+++|+|   +++++.+++++++++||.|++++|.|+.+...+..     .|..+.
T Consensus        65 ~~~LReaia~~~~~~~g~~~~~~~~I~vt~G---~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~-----~g~~~~  136 (382)
T d1u08a_          65 VQALREAIAQKTERLYGYQPDADSDITVTAG---ATEALYAAITALVRNGDEVICFDPSYDSYAPAIAL-----SGGIVK  136 (382)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHH-----TTCEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCceEEeccc---hHHHHHHHHhhcccccceEEEecccccchhhhhhh-----ccccce
Confidence            345666666553    4    23 4899999   99999999999999999999999999999887752     454444


Q ss_pred             EeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------
Q 013079          172 FVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------  236 (450)
Q Consensus       172 ~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------  236 (450)
                      .++.+      |++++++.+ +++++++++++||||||.+.+   +++|+++|+++++.++.|+.|..+.+...      
T Consensus       137 ~~~~~~~~~~~d~~~l~~~~-~~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~  215 (382)
T d1u08a_         137 RMALQPPHFRVDWQEFAALL-SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVL  215 (382)
T ss_dssp             EEECCTTTCCCCHHHHHHHC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGG
T ss_pred             ecccccccccCCHHHHhhhh-ccCccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhcccccccccccc
Confidence            44332      889999988 889999999999999999976   56777888899999999999854433211      


Q ss_pred             C----CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc-cCCcHHHHHHHHHH
Q 013079          237 R----LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE-RIPHLGLRMKEHCH  311 (450)
Q Consensus       237 ~----~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~-~~~~l~~~~~~~~~  311 (450)
                      .    ....+++.|+||.++.+|+|+ ||+++++++++.+...... .....+.+.+.++..++. ..+++....+.+.+
T Consensus       216 ~~~~~~~~~i~~~s~SK~~~~pG~Ri-G~~v~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~  293 (382)
T d1u08a_         216 AHPQLRERAVAVSSFGKTYHMTGWKV-GYCVAPAPISAEIRKVHQY-LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQ  293 (382)
T ss_dssp             GSHHHHTTEEEEEEHHHHTTCGGGCC-EEEECCHHHHHHHHHHHHH-HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHH
T ss_pred             ccccccCcEEEEeeccccccCCcccc-hhhhccchhHHHHHhhhcc-cccccccccccccccccccchHHHHHHHHHHHh
Confidence            1    146799999999999999999 9999999999888766552 223334455555555444 33445556666788


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQFGFMAVSLGYYE  389 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~~g~i~vs~G~~~  389 (450)
                      +++.+.+.++..+..+..|.                   .|.++|+.++.  ..+..+|...|-.  +.| +.+..|+.+
T Consensus       294 ~~~~l~~~~~~~g~~~~~p~-------------------gg~~~~~~~~~~~~~d~~e~~~~ll~--e~g-V~v~PG~~F  351 (382)
T d1u08a_         294 KRDILVNALNESRLEILPCE-------------------GTYFLLVDYSAVSTLDDVEFCQWLTQ--EHG-VAAIPLSVF  351 (382)
T ss_dssp             HHHHHHHHTTSSSCEECCCC-------------------BSSEEEEECTTTCCSCHHHHHHHHHH--HSC-EECEEGGGG
T ss_pred             hhhhhhhhhccCCcEEecCC-------------------ceEEEEEecCCCCCCCHHHHHHHHHH--HCC-EEEEcchhh
Confidence            88888888877776665443                   67789999873  2234556665422  234 455556432


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQD  444 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~  444 (450)
                      ..                   -+...++||||++ . +.+    .|+++++++++
T Consensus       352 ~~-------------------~~~~~~~~Ris~~-~-~~e----~l~~al~RL~~  381 (382)
T d1u08a_         352 CA-------------------DPFPHKLIRLCFA-K-KES----TLLAAAERLRQ  381 (382)
T ss_dssp             CS-------------------SCCCSCEEEEECC-S-CHH----HHHHHHHHHTT
T ss_pred             CC-------------------CCCCCCEEEEEEe-C-CHH----HHHHHHHHHhC
Confidence            11                   0112578999999 5 333    45666666654

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.3e-25  Score=219.49  Aligned_cols=280  Identities=15%  Similarity=0.175  Sum_probs=196.5

Q ss_pred             CCCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhccCCC-EEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079           95 RHFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLCSSGG-HVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus        95 r~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~~~gd-~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ||.++...+|++.||+++|.  +++++|+|   +++++.+++.+++.+|| .|+++.|.|..+...+.     ..|.++.
T Consensus        52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~G---s~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~-----~~g~~v~  123 (354)
T d1fg7a_          52 RYPECQPKAVIENYAQYAGVKPEQVLVSRG---ADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAE-----TIGVECR  123 (354)
T ss_dssp             SCCCSSCHHHHHHHHHHHTSCGGGEEEESH---HHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHH-----HHTCEEE
T ss_pred             cCCCCcHHHHHHHHHHHhCCChHHeeeccC---chHHHHHHHHHhhccccccccccccccccchhhhh-----ccCceee
Confidence            45666667999999999985  57999999   99999999999999998 58889999999887775     3577887


Q ss_pred             EeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHH--hcCCEEEEeCCCCCCCCC------ccCC
Q 013079          172 FVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAH--DKGVTVVVDNTFSPLVLS------PARL  238 (450)
Q Consensus       172 ~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~--~~gi~livD~~~~~~~~~------~~~~  238 (450)
                      .++.+     |+++++.++  .++++|++++||||||.+.+.+++..++.  +++..+++|++|..+..+      ....
T Consensus       124 ~~~~~~~~~~d~~~l~~~~--~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~  201 (354)
T d1fg7a_         124 TVPTLDNWQLDLQGISDKL--DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEY  201 (354)
T ss_dssp             ECCCCTTSCCCHHHHHTSC--TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTC
T ss_pred             ccccccccccchhhhhhcc--cccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhccc
Confidence            77643     788888766  47999999999999999987554333332  357888889887444321      1123


Q ss_pred             CCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHH
Q 013079          239 GADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       239 g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l  316 (450)
                      ...+++.|+||.+|++|+|+ ||+++++++++.+...+..   ...+.+.+..+..+..  ...+...+.+++.+.++.+
T Consensus       202 ~~~iv~~S~SK~~~laGlRi-Gy~i~~~~~i~~l~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l  277 (354)
T d1fg7a_         202 PHLAILRTLSKAFALAGLRC-GFTLANEEVINLLMKVIAP---YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYL  277 (354)
T ss_dssp             TTEEEEEESSSTTCCGGGCC-EEEEECHHHHHHHHHHSCS---SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEeCCccccCCCcccc-ccccccchhhhhhhhhcCc---cchhhHHHHHHHHHHhhhccccccccchhhhhHHHHH
Confidence            56789999999999999999 9999999999988776551   1222222222222221  1122444556677888899


Q ss_pred             HHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccccc
Q 013079          317 ARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCS  395 (450)
Q Consensus       317 ~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~  395 (450)
                      .+.|.+++. ...+|.                   .|+++++++++.   ..+.+.|...   | +.+..++..      
T Consensus       278 ~~~l~~~~~~~~~~p~-------------------~~~f~~~~~~~~---~~~~~~L~~~---g-Ilvr~~~~~------  325 (354)
T d1fg7a_         278 IAALKEIPCVEQVFDS-------------------ETNYILARFKAS---SAVFKSLWDQ---G-IILRDQNKQ------  325 (354)
T ss_dssp             HHHHHHSTTEEEECCC-------------------SSSEEEEEETTH---HHHHHHHHHT---T-EECEECTTS------
T ss_pred             HHHHHhCCCcceeCCC-------------------CceEEEEeCCCH---HHHHHHHHHC---C-cEEecCCCC------
Confidence            999999876 334453                   467899999854   3456666542   3 444322110      


Q ss_pred             ccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          396 GSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       396 ~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                                     .+. +++||||+| .  . +..+.|.++|+
T Consensus       326 ---------------~~~-~~~lRisig-t--~-ee~~~~l~aLk  350 (354)
T d1fg7a_         326 ---------------PSL-SGCLRITVG-T--R-EESQRVIDALR  350 (354)
T ss_dssp             ---------------TTC-TTEEEEECC-C--H-HHHHHHHHHHH
T ss_pred             ---------------CCC-CCEEEEEeC-C--H-HHHHHHHHHHh
Confidence                           012 479999999 3  2 33456666665

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=3.3e-26  Score=226.45  Aligned_cols=289  Identities=19%  Similarity=0.228  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE----G----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~----g----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..+||+.+|+++    |    .+++++|+|   +++++..++.+++.+||.|+++.|.|+.+...+.     ..|..+..
T Consensus        66 ~~~LR~aia~~~~~~~g~~~~~~~I~it~G---~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~-----~~g~~~~~  137 (389)
T d2gb3a1          66 IWELREAFASYYKRRQRVDVKPENVLVTNG---GSEAILFSFAVIANPGDEILVLEPFYANYNAFAK-----IAGVKLIP  137 (389)
T ss_dssp             CHHHHHHHHHHHHHTSCCCCCGGGEEEESH---HHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHH-----HHTCEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcccceEEeccc---ccccccccccccccCCCeEEEeCCCCcccccccc-----ccCccccc
Confidence            345566666544    3    467999999   9999999999999999999999999999988775     24656655


Q ss_pred             eCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-------
Q 013079          173 VDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-------  236 (450)
Q Consensus       173 v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~-------  236 (450)
                      ++.+      +.+.+...+ .++++++++++||||||.+.+   +++|+++|+++++++|+|++|..+.++..       
T Consensus       138 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~  216 (389)
T d2gb3a1         138 VTRRMEEGFAIPQNLESFI-NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI  216 (389)
T ss_dssp             EECCGGGTSCCCTTGGGGC-CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS
T ss_pred             cccccccccchhhhhhhhc-ccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccc
Confidence            5543      334455555 678999999999999999965   78999999999999999999966654321       


Q ss_pred             CCCCeEEEeCCCCccccCccceEEEEEcCHHH-HHHHHHHhhhhhhccCCC-chHHHHHHHHccC-CcHHHHHHHHHHHH
Q 013079          237 RLGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGALMLLGPT-MNPKVAFELSERI-PHLGLRMKEHCHRA  313 (450)
Q Consensus       237 ~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~~~~~g~~-~~~~~a~~~~~~~-~~l~~~~~~~~~~~  313 (450)
                      .....+++.|+||.++.+|+|+ ||++++.+. ...+......   ..++. ..+.++..++... +++....+.+++++
T Consensus       217 ~~~~~~v~~s~sK~~~~~GlRi-G~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  292 (389)
T d2gb3a1         217 ESDKVVVIDSVSKKFSACGARV-GCLITRNEELISHAMKLAQG---RLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERV  292 (389)
T ss_dssp             CCTTEEEEEESTTTTTCGGGCC-EEEECSCHHHHHHHHHHHHH---SCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCcccce-eeeeccchhHHHHHhhhhhc---cccccccccccccccccccchhcccccccccccc
Confidence            1256789999999999999999 999886654 4434333321   22222 3333333343333 23455556678899


Q ss_pred             HHHHHHHHhCCCe-eeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc---ccccccccccccc
Q 013079          314 LIFARRMKKLGLK-VLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA---QFGFMAVSLGYYE  389 (450)
Q Consensus       314 ~~l~~~L~~~~~~-v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~---~~g~i~vs~G~~~  389 (450)
                      +.+.+.|++++.. +..|.                   .|.++|++++..+ ...|...|....   ..| +.+..|+.+
T Consensus       293 ~~~~~~L~~~~~~~~~~p~-------------------~g~~~~~~lp~~~-~~~~~~~ll~e~~l~~~~-v~v~pg~~f  351 (389)
T d2gb3a1         293 ETVLKKLEEHGLKRFTKPS-------------------GAFYITAELPVED-AEEFARWMLTDFNMDGET-TMVAPLRGF  351 (389)
T ss_dssp             HHHHHHHHHTTCCCBCCCS-------------------BSSEEEEECSSSC-HHHHHHHHHHSCCBTTEE-EECEEGGGG
T ss_pred             hhhhhhhhhhccccccCCC-------------------ceEEEEEeCCCCC-HHHHHHHHHHhhhhhhCC-EEEEeCccc
Confidence            9999999998763 33332                   5779999998432 344554442100   011 233333222


Q ss_pred             ccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHHh
Q 013079          390 TLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLG--TLDQRWSQFEKALSRM  442 (450)
Q Consensus       390 s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~--~~~~~i~~l~~al~~~  442 (450)
                      ...                  .|..+++||||++ ..  +.++.++.|.++|+++
T Consensus       352 ~~~------------------~~~~~~~iRis~~-~~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         352 YLT------------------PGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             CSS------------------TTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred             ccC------------------CCCCCCEEEEEEc-CCHHHHHHHHHHHHHHHHHh
Confidence            110                  1233689999999 53  2344456666666654

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.95  E-value=2.2e-25  Score=223.33  Aligned_cols=271  Identities=15%  Similarity=0.168  Sum_probs=185.8

Q ss_pred             HHHHHHHHHHHh----C------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          101 VLNLSRQMAALE----G------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       101 ~~~l~~~iA~l~----g------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ..+||+.||+++    |      ++++++|+|   +++++.+++.+++.+||+|++++|.|+++...+.    ...|+++
T Consensus        85 ~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G---~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~----~~~g~~~  157 (428)
T d1iaya_          85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG---ATGANETIIFCLADPGDAFLVPSPYYPAFNRDLR----WRTGVQL  157 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEH---HHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTT----TTTCCEE
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCChhhEEEcCC---HHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHH----HhcCCeE
Confidence            346777777654    2      457899999   9999999999999999999999999999887653    1247888


Q ss_pred             EEeCCC-------CHHHHHHhh-----hcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079          171 TFVDIS-------DHEMVNSAI-----VQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       171 ~~v~~~-------d~~~l~~ai-----~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~  235 (450)
                      ..++.+       |+++++.++     ...++++|++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.
T Consensus       158 v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~  237 (428)
T d1iaya_         158 IPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT  237 (428)
T ss_dssp             EEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS
T ss_pred             EEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCc
Confidence            887653       666665443     1457899999999999999976   7889999999999999999996554321


Q ss_pred             c-----------------CCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhhccCC-CchHHHHHHHH
Q 013079          236 A-----------------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALMLLGP-TMNPKVAFELS  296 (450)
Q Consensus       236 ~-----------------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~~~g~-~~~~~~a~~~~  296 (450)
                      .                 .....+++.|+||.++.+|+|+ ||++. ++.+.+.+.....    .... ...+..+...+
T Consensus       238 ~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRi-G~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~a~l  312 (428)
T d1iaya_         238 PQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRV-GIIYSFNDDVVNCARKMSS----FGLVSTQTQYFLAAML  312 (428)
T ss_dssp             SCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCE-EEEEESCHHHHHHHHHHHT----TSCCCHHHHHHHHHHT
T ss_pred             ccccccccccchhhccccccceEEEEecCCCcccCCCccc-ccccccccchhhhhhhhhc----ccccccccccchhhhh
Confidence            1                 1135689999999999999998 88877 4556665554433    2222 22222222222


Q ss_pred             ccCC----cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC------CHHHHH
Q 013079          297 ERIP----HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME------TEEKAN  366 (450)
Q Consensus       297 ~~~~----~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~------~~~~~~  366 (450)
                      ....    ++.+..+.+.++++.+.+.|+..++++..|.                   .|.++|++++      ..+...
T Consensus       313 ~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~-------------------gg~f~w~~l~~~~~~~~~~~~~  373 (428)
T d1iaya_         313 SDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNN-------------------AGLFCWMDLRPLLRESTFDSEM  373 (428)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCS-------------------SSSEEEEECGGGCSSSSHHHHH
T ss_pred             hhhccccccccccccccchhHHHHHHHHHhCCCEEecCC-------------------cceEEEEECccccccCCCCCHH
Confidence            2212    2334445567788899999988877655443                   5778999986      223344


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT  427 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~  427 (450)
                      .|.+.|-.  ..| +.+..|+.+..                     -.+++||||++ ..+
T Consensus       374 ~l~~~Ll~--~~g-V~v~PG~~F~~---------------------~~~g~~Ris~a-~~~  409 (428)
T d1iaya_         374 SLWRVIIN--DVK-LNVSPGSSFEC---------------------QEPGWFRVCFA-NMD  409 (428)
T ss_dssp             HHHHHHHH--TSC-EECEEGGGGTC---------------------SSSSEEEEECS-SSC
T ss_pred             HHHHHHHH--hCC-EEEEcchhcCC---------------------CCCCEEEEEeC-CCC
Confidence            55555432  123 55555543211                     12588999998 543

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.94  E-value=2.7e-25  Score=222.92  Aligned_cols=286  Identities=17%  Similarity=0.158  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHHh----C------CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079          101 VLNLSRQMAALE----G------TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus       101 ~~~l~~~iA~l~----g------~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      ..+||+.||+++    |      ++++++|+|   +++|+.+++.+++++||+|++++|.|+.+...+..    ..|+++
T Consensus        86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G---~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~----~~g~~~  158 (431)
T d1m7ya_          86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAG---ATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKW----RTGVEI  158 (431)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEH---HHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTT----TTCCEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCcceEEECCC---HHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHH----hcCcee
Confidence            345677777654    2      357999999   99999999999999999999999999988776531    146777


Q ss_pred             EEeCCC-------CHHHHHHhhh-----cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc
Q 013079          171 TFVDIS-------DHEMVNSAIV-----QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP  235 (450)
Q Consensus       171 ~~v~~~-------d~~~l~~ai~-----~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~  235 (450)
                      +.++.+       |++.+++++.     ..+++++++++||||||.+.+   +++|+++|+++|+++|+|++|..+.++.
T Consensus       159 v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~  238 (431)
T d1m7ya_         159 VPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS  238 (431)
T ss_dssp             EEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS
T ss_pred             ccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCC
Confidence            776543       6777776652     246889999999999999975   7789999999999999999996554321


Q ss_pred             c-------------------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHH
Q 013079          236 A-------------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       236 ~-------------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~  296 (450)
                      .                   ..+..+++.|+||.++.+|+|+ ||++.+++++..........  ...+...+..+...+
T Consensus       239 ~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~Ri-G~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~a~l  315 (431)
T d1m7ya_         239 PSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRV-GAIYSNDDMVVAAATKMSSF--GLVSSQTQHLLSAML  315 (431)
T ss_dssp             SCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCE-EEEEESCHHHHHHHHHHGGG--SCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCcc-ceeccchhhhHHHHHHHhcc--ccccccccchhhhhh
Confidence            1                   0134699999999999999998 99998877765544333211  122222222222222


Q ss_pred             ccC----CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC------HHHHH
Q 013079          297 ERI----PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET------EEKAN  366 (450)
Q Consensus       297 ~~~----~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~------~~~~~  366 (450)
                      ...    +++.+..++++++++.+.+.|++.++.+..|.                   .|.++|++++.      .+...
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~-------------------gg~f~w~~l~~~~~~~~~~~~~  376 (431)
T d1m7ya_         316 SDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGN-------------------AGLFCWVDMRHLLRSNTFEAEM  376 (431)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCC-------------------SSSEEEEECGGGSSSSSHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCC-------------------ceeEEEEECccccccCcccCHH
Confidence            222    23444555678888899999998887765443                   57789999862      33344


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCH---HHHHHHHHHHHH
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTL---DQRWSQFEKALS  440 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~---~~~i~~l~~al~  440 (450)
                      .|...|-.  +.| +.+..|+.+..                     ..++++|||++ ..+.   ++.+++|.++|+
T Consensus       377 ~l~~~ll~--~~g-V~v~PG~~F~~---------------------~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~  428 (431)
T d1m7ya_         377 ELWKKIVY--EVH-LNISPGSSCHC---------------------TEPGWFRVCFA-NLPERTLDLAMQRLKAFVG  428 (431)
T ss_dssp             HHHHHHHH--TSC-EECEEGGGGTC---------------------SSTTEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HCC-EEEEeccccCC---------------------CCCCEEEEEeC-cCCHHHHHHHHHHHHHHHH
Confidence            55555532  133 45555543211                     12578999998 5433   333444444443

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.94  E-value=1.6e-25  Score=222.49  Aligned_cols=288  Identities=14%  Similarity=0.125  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEE
Q 013079          101 VLNLSRQMAALE--------GTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTF  172 (450)
Q Consensus       101 ~~~l~~~iA~l~--------g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~  172 (450)
                      ..+||+.||+++        .++++++|+|   +++++.+++.+++++||+|+++.|+|..+...+.     ..|.++..
T Consensus        73 ~~~lR~aia~~l~~~~g~~~~~~~I~it~G---~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~-----~~g~~~~~  144 (403)
T d1wsta1          73 FTPLRLALARWMEKRYDIPMSKVEIMTVAG---SQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFK-----YYDPEFIS  144 (403)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCTTCEEEEESS---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTCCEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCChHHeeeccc---chHHHHHHHHHHhhcCCccccCCCcchhhhHHHh-----hcccccee
Confidence            455666666664        3578999999   9999999999999999999999999999998875     35666666


Q ss_pred             eCCC----CHHHH----HHhh--hcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc----
Q 013079          173 VDIS----DHEMV----NSAI--VQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP----  235 (450)
Q Consensus       173 v~~~----d~~~l----~~ai--~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~----  235 (450)
                      ++.+    +...+    +...  .+..+.++++++||||||.+.+   +++|+++|++||+++|+|++|..+.++.    
T Consensus       145 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~  224 (403)
T d1wsta1         145 IPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTP  224 (403)
T ss_dssp             EEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred             EeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCC
Confidence            6543    22222    1111  0345667888999999999976   6688999999999999999996654321    


Q ss_pred             -----cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC---CcHHHHHH
Q 013079          236 -----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGLRMK  307 (450)
Q Consensus       236 -----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~~~~  307 (450)
                           ...+..++++|+||.++ +|+|+ ||+++++++++.+....... ....+...+..........   .++....+
T Consensus       225 ~~~~~~~~~~~i~~~S~SK~~~-~G~Ri-G~~i~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (403)
T d1wsta1         225 PIKHFDDYGRVIYLGTFSKILA-PGFRI-GWVAAHPHLIRKMEIAKQSI-DLCTNTFGQAIAWKYVENGYLDEHIPKIIE  301 (403)
T ss_dssp             CGGGGCSSSCEEEEEESTTTTC-GGGCC-EEEEECHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             cccccCCCCcEEEEccccceec-Ccccc-cccccchHHHHHHHHHHhhh-ccccccchhhhHHhhhhccccchhHHHHHH
Confidence                 12367899999999996 89998 99999999998877655421 1222333333332222221   11334445


Q ss_pred             HHHHHHHHHHHHHHhC---CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccc
Q 013079          308 EHCHRALIFARRMKKL---GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVS  384 (450)
Q Consensus       308 ~~~~~~~~l~~~L~~~---~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs  384 (450)
                      .+..+++.+.+.|.+.   +..+..|.                   .|.++|++++...+...+.+.|..   .| +.+.
T Consensus       302 ~~~~~~~~~~~~L~~~~~~~~~~~~p~-------------------gg~~~~~~~~~~~~~~~~~~~l~~---~g-V~v~  358 (403)
T d1wsta1         302 FYKPRRDAMLEALEEYMPEGVEWTKPE-------------------GGMFVRVTLPEGIDTKLMMERAVA---KG-VAYV  358 (403)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCEECCCS-------------------BSSEEEEECCTTCCTTTTHHHHHH---TT-EECE
T ss_pred             HHHHHHHHHHHHHHhhccCCeEEeCCC-------------------ceeEEEEECCCCCCHHHHHHHHHH---CC-EEEE
Confidence            5677778888888774   22443332                   577999999854334556666654   23 5655


Q ss_pred             cccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCC---HHHHHHHHHHHHHHh
Q 013079          385 LGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGT---LDQRWSQFEKALSRM  442 (450)
Q Consensus       385 ~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~---~~~~i~~l~~al~~~  442 (450)
                      .|+.+..-                   +-.++++|||++ ..+   +++.++.|.++|++.
T Consensus       359 pg~~f~~~-------------------~~~~~~iRi~~~-~~~~~~l~~al~rl~~~l~~~  399 (403)
T d1wsta1         359 PGEAFFVH-------------------RDKKNTMRLNFT-YVPEETIREGVRRLAETIKEE  399 (403)
T ss_dssp             EGGGGSTT-------------------CCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             echhhcCC-------------------CCCCCEEEEEec-CCCHHHHHHHHHHHHHHHHHH
Confidence            55433210                   112579999999 533   444455666666643

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=3.8e-26  Score=228.36  Aligned_cols=291  Identities=14%  Similarity=0.175  Sum_probs=196.4

Q ss_pred             HHHHHHHHHHHh----C-----CCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079          101 VLNLSRQMAALE----G-----TEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus       101 ~~~l~~~iA~l~----g-----~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ..+||+.||+++    |     .+++++|+|   +++|+.+++.+++.+||+|++++|.|+.+...++     ..|.++.
T Consensus        82 ~~~LR~aia~~~~~~~g~~~~~~~~I~it~G---~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~-----~~g~~~~  153 (420)
T d1vp4a_          82 DPVLKQQILKLLERMYGITGLDEDNLIFTVG---SQQALDLIGKLFLDDESYCVLDDPAYLGAINAFR-----QYLANFV  153 (420)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEH---HHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHH-----TTTCEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCHHHeEeccc---hhhhHHHHHHhhhccccccccccccccchhHHHH-----HHhhhcc
Confidence            344666666543    3     356899999   9999999999999999999999999999988775     3677777


Q ss_pred             EeCCC----CHHHHHHhhh--------cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc
Q 013079          172 FVDIS----DHEMVNSAIV--------QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA  236 (450)
Q Consensus       172 ~v~~~----d~~~l~~ai~--------~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~~  236 (450)
                      .++.+    |++.+...+.        ...+.++++++||||||.+.+   +++|+++|+++++++|+|++|..+.++..
T Consensus       154 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~  233 (420)
T d1vp4a_         154 VVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE  233 (420)
T ss_dssp             EEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC
T ss_pred             cccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc
Confidence            66543    5665544321        123446667899999999964   77999999999999999999966654321


Q ss_pred             ---------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC---CcHHH
Q 013079          237 ---------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI---PHLGL  304 (450)
Q Consensus       237 ---------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~---~~l~~  304 (450)
                               ..+..+++.|++|+++ +|+|+ ||+++++++++.+....... ....+...+..+...+...   +++..
T Consensus       234 ~~~~~~~~~~~~~~i~~~s~sk~~~-~G~Ri-G~~~~~~~~i~~l~~~~~~~-~~~~~~~~q~~~a~~l~~~~~~~~~~~  310 (420)
T d1vp4a_         234 TVDPIFKIGGPERVVLLNTFSKVLA-PGLRI-GMVAGSKEFIRKIVQAKQSA-DLCSPAITHRLAARYLERYDLLEQLKP  310 (420)
T ss_dssp             CCCCHHHHHCTTTEEEEEESTTTTC-GGGCE-EEEECCHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHSCHHHHTHH
T ss_pred             ccccccccccccceeEEeccccccc-ccccc-ccccccchhhhhhhhhhhhc-cccCchhhhhhhhhhcccccccccchh
Confidence                     1256788899999886 89998 99999999999887765522 1223333444343333322   22344


Q ss_pred             HHHHHHHHHHHHHHHHHhC-----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079          305 RMKEHCHRALIFARRMKKL-----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG  379 (450)
Q Consensus       305 ~~~~~~~~~~~l~~~L~~~-----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g  379 (450)
                      ..+.++++++.+.+.|++.     +..+..|.                   .|.++|++++...+...+.+.|...   |
T Consensus       311 ~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~-------------------gg~f~~~~~~~~~d~~~~~~~l~~~---g  368 (420)
T d1vp4a_         311 TIELYRRKRTVMLNALEEYFSDIPGVKWVKSE-------------------GGLFIWLTLPEGFDTWEMFEYAKRK---K  368 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSTTCEECCCS-------------------BSSEEEEECCTTCCTTTTHHHHHHH---T
T ss_pred             HHHHhhhhcccchhhhhhhhccCCCcEEecCC-------------------ceEEEEEECCCCCCHHHHHHHHHHC---C
Confidence            5556777778888888764     22443332                   5679999998432344555555542   3


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH---HHHHHHHHHHHHhhhc
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD---QRWSQFEKALSRMQDS  445 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~---~~i~~l~~al~~~~~~  445 (450)
                       +.+..|+.+..                   .+-..++||||++ ..+.+   +.+++|.++|++..++
T Consensus       369 -V~v~PG~~F~~-------------------~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~~~~~~  416 (420)
T d1vp4a_         369 -VFYVPGRVFKV-------------------YDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVLEYGKE  416 (420)
T ss_dssp             -EECEEGGGGCT-------------------TCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -eEEEechhhCC-------------------CCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHHhhHh
Confidence             56665644321                   0122578999998 64444   4456677777766544

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.94  E-value=3.1e-25  Score=216.66  Aligned_cols=282  Identities=12%  Similarity=0.099  Sum_probs=189.5

Q ss_pred             CCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           96 HFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      |+.+...+|++.||+.++.+  .+++|+|   +++++.+++..+.  ++.+++..|.|..+.....     ..+..+..+
T Consensus        54 Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g---~~~~~~~~~~~~~--~~~~~v~~p~~~~~~~~~~-----~~~~~~~~v  123 (355)
T d1lc5a_          54 YPDADYFHLHQALARHHQVPASWILAGNG---ETESIFTVASGLK--PRRAMIVTPGFAEYGRALA-----QSGCEIRRW  123 (355)
T ss_dssp             CCCTTCHHHHHHHHHHHTSCGGGEEEESS---HHHHHHHHHHHHC--CSEEEEEESCCTHHHHHHH-----HTTCEEEEE
T ss_pred             CCCCChHHHHHHHHHHhCCCHHHEEeccc---HHHHHHHHHhhhc--cccccccCCccceeccccc-----cccccceee
Confidence            34444568999999999864  5899999   9998887776543  4555666688877765553     234555555


Q ss_pred             CCC------CHHHHHHhhhcCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeCCCCCCCCCc-------cC
Q 013079          174 DIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDNTFSPLVLSP-------AR  237 (450)
Q Consensus       174 ~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~~~~~~~~~~-------~~  237 (450)
                      +.+      ..+++.+++ .+++++|++++||||||.+.+   +++|+++|+++++++|+|++|..+....       ..
T Consensus       124 ~~~~~~~~~~~~~~~~~~-~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~  202 (355)
T d1lc5a_         124 SLREADGWQLTDAILEAL-TPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKD  202 (355)
T ss_dssp             ECCGGGTTCCCTTHHHHC-CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTT
T ss_pred             eeeccCCccceeeeeecc-ccccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccc
Confidence            543      224566667 789999999999999999976   6688889999999999999995543321       12


Q ss_pred             CCCeEEEeCCCCccccCccceEEEEEcCHHHH-HHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 013079          238 LGADVVVHSISKFISGGADIIAGAVCGPANLV-NSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIF  316 (450)
Q Consensus       238 ~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~-~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l  316 (450)
                      .+..+++.|+||.+|.+|+|+ ||++++.+.+ +.+...+.   ....+.+.+.++..++....++....++++++++++
T Consensus       203 ~~~~i~~~S~SK~~~l~GlR~-G~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  278 (355)
T d1lc5a_         203 NPHIWVLRSLTKFYAIPGLRL-GYLVNSDDAAMARMRRQQM---PWSVNALAALAGEVALQDSAWQQATWHWLREEGARF  278 (355)
T ss_dssp             CTTEEEEEESTTTTTCTTTCC-EEEECCCHHHHHHHHHHSC---TTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeecccccccccccccc-cceeccchhhhHHHHhhcC---CccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence            257899999999999999999 9999876544 44443332   122233334444444444445666667778888899


Q ss_pred             HHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccc
Q 013079          317 ARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSG  396 (450)
Q Consensus       317 ~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~  396 (450)
                      .+.|.+.+.....|.                   .|+++++.++..  ...+.+.|...   | +.+..|+..       
T Consensus       279 ~~~l~~~~~~~~~p~-------------------~~~f~~~~~~~~--~~~~~~~L~~~---g-v~vr~~~~f-------  326 (355)
T d1lc5a_         279 YQALCQLPLLTVYPG-------------------RANYLLLRCERE--DIDLQRRLLTQ---R-ILIRSCANY-------  326 (355)
T ss_dssp             HHHHHTSTTEEECCC-------------------SSSEEEEEESCT--TCCHHHHHHTT---T-EECEECTTS-------
T ss_pred             HHHHhhcCCcEECCC-------------------CCEEEEEECCCC--HHHHHHHHHHC---C-cEEEeCccC-------
Confidence            999988765323443                   467899999842  23456666542   3 444333211       


Q ss_pred             cccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          397 SSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       397 ~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                    .+..+++||||+| .   .+.+++|.++|+++
T Consensus       327 --------------~~~~~~~iRis~~-~---~~e~~~li~aL~~i  354 (355)
T d1lc5a_         327 --------------PGLDSRYYRVAIR-S---AAQNERLLAALRNV  354 (355)
T ss_dssp             --------------TTCCTTEEEEECC-C---HHHHHHHHHHHHHH
T ss_pred             --------------CCCCCCEEEEEeC-C---HHHHHHHHHHHHHh
Confidence                          1223589999999 3   33456776766654

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.94  E-value=2.4e-26  Score=224.79  Aligned_cols=164  Identities=15%  Similarity=0.202  Sum_probs=141.9

Q ss_pred             hhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC--
Q 013079           99 PTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS--  176 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~--  176 (450)
                      +..+.+++.+|+++|++.+++|+|   |++|+.+++.+++++||+||++.++|.+....+.     ..|.++.+++.+  
T Consensus        47 ~l~~~~~~~~A~~~g~e~~~~t~g---~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~-----~~g~~v~~v~~~~~  118 (364)
T d2e7ja1          47 PIHDFIHNQLPKFLGCDVARVTNG---AREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAE-----RAGLNIALVPKTDY  118 (364)
T ss_dssp             CHHHHHHTHHHHHTTSSEEEEESS---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----HTTCEEEEECCCCT
T ss_pred             HHHHHHHHHHHHHhCcCEEEEECc---HHHHHHHHHHHHhCCCcEEEeecccccccchHHH-----hccceEEEeeeccc
Confidence            467889999999999999999999   9999999999999999999999999999887764     368888888753  


Q ss_pred             -----CHHHHHHhhh----cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEe
Q 013079          177 -----DHEMVNSAIV----QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVH  245 (450)
Q Consensus       177 -----d~~~l~~ai~----~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~  245 (450)
                           |++++++++.    ..++++|++++|+||||.+.|+++|+++|++||+++|+|++|  +.+..+..++++|++++
T Consensus       119 ~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~  198 (364)
T d2e7ja1         119 PDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVG  198 (364)
T ss_dssp             TTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEE
T ss_pred             cccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcccccccceeee
Confidence                 7889988882    134568999999999999999999999999999999999999  44455666678999999


Q ss_pred             CCCCccccCccceEEEEEcCHHHHHHH
Q 013079          246 SISKFISGGADIIAGAVCGPANLVNSM  272 (450)
Q Consensus       246 S~sK~~g~~g~~igG~l~~~~~~~~~l  272 (450)
                      |+||+++++|. + |+++.++++++.+
T Consensus       199 S~~K~~~~~g~-~-g~l~~~~~~~~~~  223 (364)
T d2e7ja1         199 SGHKSMAASGP-I-GVMGMKEEWAEIV  223 (364)
T ss_dssp             EHHHHSSCCSS-C-EEEEECTTTTTTT
T ss_pred             ccccccCCCCC-E-EEEEECHHHHHHH
Confidence            99999998773 4 9999888776554

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.92  E-value=2.3e-24  Score=213.83  Aligned_cols=329  Identities=15%  Similarity=0.088  Sum_probs=212.9

Q ss_pred             ccCccccCC-HHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHh---
Q 013079           64 ASATFTVME-PETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQL---  137 (450)
Q Consensus        64 ~att~~~~~-~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l---  137 (450)
                      ++++++... .+++.+++...++|+...+.+++......+++|+++|+++|++  +++||++   +|++++.++...   
T Consensus        34 as~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~---~T~~~~~~~~~~~~~  110 (404)
T d1qz9a_          34 NSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDT---TSINLFKVLSAALRV  110 (404)
T ss_dssp             TTSCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSC---HHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecC---chHHHHHHhhhhhhh
Confidence            455665555 4889999888888876555566655678899999999999974  6899999   999998876532   


Q ss_pred             ---ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHH
Q 013079          138 ---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRL  214 (450)
Q Consensus       138 ---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~l  214 (450)
                         ..+++.|++++..|++....+.....+.....+......+++.+++++ +++|++|++++++|.||.++|+++|+++
T Consensus       111 ~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~T~lV~i~~v~~~tG~~~pv~~i~~~  189 (404)
T d1qz9a_         111 QATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAI-DQDTAVVMLTHVNYKTGYMHDMQALTAL  189 (404)
T ss_dssp             HHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHC-STTEEEEEEESBCTTTCBBCCHHHHHHH
T ss_pred             hcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHHhc-CCCceEEEEecccccccceecHHHHhcc
Confidence               256788888877776655444322111112222222234778888999 9999999999999999999999999999


Q ss_pred             HHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCccc-cCccceEEEEEcCHHHHHHHHHHhhh-------------
Q 013079          215 AHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKFIS-GGADIIAGAVCGPANLVNSMMDLHQG-------------  278 (450)
Q Consensus       215 a~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g-~~g~~igG~l~~~~~~~~~l~~~~~~-------------  278 (450)
                      |+++|+.+++|.+|  +.+..+....++|+++.|.||++. ++|.  +|+++.++.+.+.+.....+             
T Consensus       190 ~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (404)
T d1qz9a_         190 SHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGS--QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPR  267 (404)
T ss_dssp             HHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTC--CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSS
T ss_pred             ccccccceeEEeeccccccccccccccceEEEEechhhcccCCce--EEEEEechhhhhhCCccccccCCcccccccccc
Confidence            99999999999998  666677777799999999999985 4442  37777776554433110000             


Q ss_pred             ------hhhccCCCchHHHH---HHHHcc--CC---cHHHHHHHHHHHHHHHHHHHHhC-CCeeeCCCCCCCchhHHHHH
Q 013079          279 ------ALMLLGPTMNPKVA---FELSER--IP---HLGLRMKEHCHRALIFARRMKKL-GLKVLYPGLEDHPHHELLKS  343 (450)
Q Consensus       279 ------~~~~~g~~~~~~~a---~~~~~~--~~---~l~~~~~~~~~~~~~l~~~L~~~-~~~v~~p~~~~~p~~~l~~~  343 (450)
                            .......+......   ......  ..   ....+..........+.+.+... +.++..|..   +.      
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~---~~------  338 (404)
T d1qz9a_         268 YEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPRE---HA------  338 (404)
T ss_dssp             CCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSS---GG------
T ss_pred             ccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCC---cc------
Confidence                  00011112221111   111111  11   12222222222223333333333 446665541   11      


Q ss_pred             HhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeC
Q 013079          344 MANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVG  423 (450)
Q Consensus       344 ~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g  423 (450)
                            ..+++++|.+++.   ..+...|...   | |.++.           +                .++.||||+|
T Consensus       339 ------~r~~~vsf~~~~~---~~v~~~L~~~---g-i~~~~-----------r----------------~~~~lRiS~~  378 (404)
T d1qz9a_         339 ------KRGSHVSFEHPEG---YAVIQALIDR---G-VIGDY-----------R----------------EPRIMRFGFT  378 (404)
T ss_dssp             ------GBCSEEEEECTTH---HHHHHHHHTT---T-EECEE-----------E----------------TTTEEEEECC
T ss_pred             ------ceeeEEEEecCCH---HHHHHHHHHC---C-CEEee-----------c----------------CCCeEEEECC
Confidence                  3578999999864   4566666642   2 22111           0                1478999998


Q ss_pred             CC-CCHHHHHHHHHHHHHHhhhcCCC
Q 013079          424 YL-GTLDQRWSQFEKALSRMQDSGVF  448 (450)
Q Consensus       424 ~~-~~~~~~i~~l~~al~~~~~~~~~  448 (450)
                       + .+++++|+.+.++|+++-+.+.+
T Consensus       379 -h~ynt~~did~~~~~L~~vl~~~~~  403 (404)
T d1qz9a_         379 -PLYTTFTEVWDAVQILGEILDRKTW  403 (404)
T ss_dssp             -TTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHhCCC
Confidence             6 78889999999999988776654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-23  Score=206.23  Aligned_cols=299  Identities=14%  Similarity=0.197  Sum_probs=199.9

Q ss_pred             cCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeE
Q 013079           94 SRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITT  170 (450)
Q Consensus        94 ~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v  170 (450)
                      +......++++++.|++++|.+   .++||+|   ||+++++++..++.+|+++++....+.+........  . .+..+
T Consensus        47 s~~f~~i~~ea~~~l~~llg~~~~~~ii~~gs---gT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~  120 (388)
T d1h0ca_          47 SKDMYQIMDEIKEGIQYVFQTRNPLTLVISGS---GHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGE--R-IGARV  120 (388)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSC---HHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHH--H-HC--C
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCc---HHHHHHHHHHHhhccCCceeeecccceeeeeccccc--c-ccccc
Confidence            3334567899999999999974   3788899   999999999999999999999998888765443211  1 23333


Q ss_pred             EEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEE
Q 013079          171 TFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVV  243 (450)
Q Consensus       171 ~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~  243 (450)
                      ..+..+     |.+++++.+...++++|++++.+|.||.++|+++|+++|+++|+++++|+++  +.+..+...+++|++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~  200 (388)
T d1h0ca_         121 HPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDIL  200 (388)
T ss_dssp             BCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred             cccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHHhhcccccceecccccccccccccccccccee
Confidence            333222     7777777665678999999999999999999999999999999999999998  566778888899999


Q ss_pred             EeCCCCccccCccceEEEEEcCHHHHHHHHHHhh-------------------hhhhccCCCchHHHHHHHHccCC----
Q 013079          244 VHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ-------------------GALMLLGPTMNPKVAFELSERIP----  300 (450)
Q Consensus       244 ~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~-------------------~~~~~~g~~~~~~~a~~~~~~~~----  300 (450)
                      +.|.+|++++++.  +|+++.++..++.+.....                   .......+++...........++    
T Consensus       201 ~~s~~K~~~gp~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~  278 (388)
T d1h0ca_         201 YSGSQKALNAPPG--TSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAE  278 (388)
T ss_dssp             EEESSSTTCCCTT--CEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCc--eEEEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHH
Confidence            9999999987764  3788888777665532100                   00001112222221111111111    


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccc
Q 013079          301 -HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFG  379 (450)
Q Consensus       301 -~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g  379 (450)
                       .+..+.++..++.+++.+.+.+.+..+..+.    +.           ....++++|.++...+...+...|..  .+|
T Consensus       279 ~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~----~~-----------~rs~~i~~~~~p~~~~~~~~~~~L~~--~~g  341 (388)
T d1h0ca_         279 QGLENSWRQHREAAAYLHGRLQALGLQLFVKD----PA-----------LRLPTVTTVAVPAGYDWRDIVSYVID--HFD  341 (388)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCS----GG-----------GBCTTEEEEECCTTCCHHHHHHHHHH--HHC
T ss_pred             hccccccccccchhHHHHHHHhhcCcccccCC----HH-----------HcCCeEEEEECCCCCCHHHHHHHHHh--cCC
Confidence             1334445556777788888887766433222    11           02345889999743335566666543  233


Q ss_pred             ccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHh
Q 013079          380 FMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       380 ~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~  442 (450)
                       |.++.|..|.                       .++.|||| +| ..++.++|+.|.++|+++
T Consensus       342 -I~v~~G~~~~-----------------------~~~~iRis~~g-~~~t~edid~li~aL~~~  380 (388)
T d1h0ca_         342 -IEIMGGLGPS-----------------------TGKVLRIGLLG-CNATRENVDRVTEALRAA  380 (388)
T ss_dssp             -EECEECCGGG-----------------------TTTEEEEECCG-GGCSHHHHHHHHHHHHHH
T ss_pred             -EEEeCCchhh-----------------------cCCEEEEeCCC-CCCCHHHHHHHHHHHHHH
Confidence             6777774321                       14689999 89 755566666666666553

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.91  E-value=2.9e-23  Score=206.19  Aligned_cols=217  Identities=13%  Similarity=0.137  Sum_probs=150.6

Q ss_pred             CccccCCCChhHHHHHHHHHHHh---C-----CCeEEEecChHHHHHHHHHHHHHh--------ccCCCEEEEeCCCchh
Q 013079           90 FFIYSRHFNPTVLNLSRQMAALE---G-----TEAAYCTASDKAGMSAISSVLMQL--------CSSGGHVVAARTLYGG  153 (450)
Q Consensus        90 ~~~y~r~~~~~~~~l~~~iA~l~---g-----~~~~~~tsg~~~gt~ai~~al~~l--------~~~gd~Vi~~~~~y~~  153 (450)
                      +|.+.........+|++.|+++.   |     ...+++++|   +++++++++.+|        +.|||+||++.|.|+.
T Consensus        91 sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~G---steli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~  167 (425)
T d2hoxa1          91 SYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVG---VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV  167 (425)
T ss_dssp             SSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH---HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH
T ss_pred             ceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCC---HHHHHHHHHHHhccccccccCCCCCEEEEecCcccc
Confidence            34444334445567888888875   2     134899999   999999999998        4688999999999999


Q ss_pred             HHHHHHHhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          154 THALLTHFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       154 ~~~~~~~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                      |..... +..   +..+.+ + .|.+.+++++ +++++++++++||||||.+..       +..+++.+|.|++|....+
T Consensus       168 Y~~~~~-~~~---~~~~~~-~-~D~~~~~~~~-~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f  233 (425)
T d2hoxa1         168 FREQTK-YFD---KKGYVW-A-GNAANYVNVS-NPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHY  233 (425)
T ss_dssp             HHHHHH-HSC---BTTEEE-E-EEGGGGTTCS-CGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTT
T ss_pred             HHHHHH-HcC---CCCCcc-C-CCHHHHHhhC-CCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccc
Confidence            987764 322   112222 1 2667777777 789999999999999999842       2236899999999933222


Q ss_pred             Cc--cCCCCeEEEeCCCCccccCccceEEEEE-cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHcc------------
Q 013079          234 SP--ARLGADVVVHSISKFISGGADIIAGAVC-GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSER------------  298 (450)
Q Consensus       234 ~~--~~~g~di~~~S~sK~~g~~g~~igG~l~-~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~------------  298 (450)
                      .+  .....++++.|+||.+|.+|+|+ ||++ .++.+.+.+..... ......+.+.+.++..++..            
T Consensus       234 ~~~~~~~~~~Ivl~S~SK~fglaGlRi-Gw~i~~~~~i~~~~~~~~~-~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~  311 (425)
T d2hoxa1         234 TPIKYKADEDILLFTMSKFTGHSGSRF-GWALIKDESVYNNLLNYMT-KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTM  311 (425)
T ss_dssp             SCCCSCBCCSEEEEEHHHHTSCGGGCC-EEEEECCHHHHHHHHHHHH-HHTSSCCHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             cchhhhcCCeEEEEeCHHhccCcchhe-eeEEeCCHHHHHHHHHhhc-cCcccCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            22  22367899999999999999999 9865 45677777776554 22233344555554443321            


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          299 IPHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       299 ~~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      .+.+....+.++++++++.+.|++.+.
T Consensus       312 ~~~~~~~~~~l~~r~~~l~~~L~~~~~  338 (425)
T d2hoxa1         312 RDLNTFGFKKLRERWVNITALLDQSDR  338 (425)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            122344455667888888888887654

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.2e-21  Score=192.77  Aligned_cols=289  Identities=12%  Similarity=0.100  Sum_probs=213.7

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+..++||+.||+++|.+.++++++   |+.|+..++.++..++|.|++....|.+....+.     ..+.++..++..
T Consensus        81 ~~~~~~~lE~~LA~~~g~e~al~~~S---G~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~-----~~~~~~~~~~hn  152 (383)
T d1bs0a_          81 YSVVHQALEEELAEWLGYSRALLFIS---GFAANQAVIAAMMAKEDRIAADRLSHASLLEAAS-----LSPSQLRRFAHN  152 (383)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----TSSSEEEEECTT
T ss_pred             cchHHHHHHHHHHHhcCCCceEEecc---cchhhHHHHHhhcCCCceEEeeccccHHHhhccc-----cCCCcceEecch
Confidence            35778999999999999999999999   9999999999999999999999999998877764     356677788888


Q ss_pred             CHHHHHHhhhc--CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCC--C------ccCCCCeEEEeC
Q 013079          177 DHEMVNSAIVQ--GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVL--S------PARLGADVVVHS  246 (450)
Q Consensus       177 d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~--~------~~~~g~di~~~S  246 (450)
                      |++++++.+..  ++.++|+++.+++.+|.+.|+++|.++|++||+++++|++++-..+  +      ......++++.|
T Consensus       153 d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t  232 (383)
T d1bs0a_         153 DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVT  232 (383)
T ss_dssp             CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEE
T ss_pred             HHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCcccccccc
Confidence            99999888743  4567899999999999999999999999999999999999832221  1      112356788999


Q ss_pred             CCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHH-HHccC--CcHHHHHHHHHHHHHHHHHHHHhC
Q 013079          247 ISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFE-LSERI--PHLGLRMKEHCHRALIFARRMKKL  323 (450)
Q Consensus       247 ~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~-~~~~~--~~l~~~~~~~~~~~~~l~~~L~~~  323 (450)
                      ++|.+|..|    |+++++.+.++.++..........+..+...++.. ++...  ...+.+..+..++..++.+.|++.
T Consensus       233 ~~ka~g~~G----g~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~  308 (383)
T d1bs0a_         233 FGKGFGVSG----AAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL  308 (383)
T ss_dssp             SSSTTSSCC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccccccccc----cccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999764    88999998888887654433222333333222222 21111  223445566778888899999888


Q ss_pred             CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccCCCC
Q 013079          324 GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSEL  403 (450)
Q Consensus       324 ~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~  403 (450)
                      ++.+.. .                   .++++.+.+.+.+.+..+.+.|...   | +.++..      ..|...     
T Consensus       309 g~~~~~-~-------------------~s~Ii~v~~g~~~~a~~~~~~L~~~---G-i~v~~~------~~PtVp-----  353 (383)
T d1bs0a_         309 PFTLAD-S-------------------CSAIQPLIVGDNSRALQLAEKLRQQ---G-CWVTAI------RPPTVP-----  353 (383)
T ss_dssp             SCEECS-C-------------------CSSBCCEEEESHHHHHHHHHHHHHT---T-EECCEE------CTTSSC-----
T ss_pred             CCccCC-C-------------------CCCEEEEEECCHHHHHHHHHHHHHC---C-ceEEEE------cCCCCC-----
Confidence            765431 1                   2347777787777777888888753   3 343322      223221     


Q ss_pred             CHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          404 NAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       404 ~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                               .....|||++. ...+++.|+.+.++|+.+
T Consensus       354 ---------~g~~~lRi~~~-a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         354 ---------AGTARLRLTLT-AAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             ---------TTCEEECCBCC-TTCCHHHHHHHHHHHHHH
T ss_pred             ---------CCCceEEEEeC-CCCCHHHHHHHHHHHHhc
Confidence                     12356999999 999999999999998764

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9.4e-22  Score=194.55  Aligned_cols=295  Identities=13%  Similarity=0.118  Sum_probs=214.3

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      ..+..+++++.||+++|.+.+++++|   |++|+..++.+++.++|.|++....|.++...+.     ..+.++..+...
T Consensus        88 ~~~~~~~lE~~lA~~~g~e~al~~~S---G~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~-----~~~a~~~~~~~~  159 (401)
T d1fc4a_          88 TQDSHKELEQKLAAFLGMEDAILYSS---CFDANGGLFETLLGAEDAIISDALNHASIIDGVR-----LCKAKRYRYANN  159 (401)
T ss_dssp             CBHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHH-----TSCSEEEEECTT
T ss_pred             CcHHHHHHHHHHHHhhcCCceEEecc---hhhhhHHHHHHhcCCCcEEEeCCcchHHHHcccc-----ccCceEEEEcCC
Confidence            45778899999999999999999999   9999999999999999999999999999887664     245566666777


Q ss_pred             CHHHHHHhhh-----cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCCCCc----------cCCCCe
Q 013079          177 DHEMVNSAIV-----QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLVLSP----------ARLGAD  241 (450)
Q Consensus       177 d~~~l~~ai~-----~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~~~~----------~~~g~d  241 (450)
                      |.+++++.+.     ..++.+|+++++.+..|.+.|+++|.++|+++|+++++||+++...+..          ..-.+|
T Consensus       160 d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~d  239 (401)
T d1fc4a_         160 DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVD  239 (401)
T ss_dssp             CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCS
T ss_pred             ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCe
Confidence            7777776552     1355788899999999999999999999999999999999983322211          111489


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHH-HHHHccCCcHHHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVA-FELSERIPHLGLRMKEHCHRALIFARRM  320 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a-~~~~~~~~~l~~~~~~~~~~~~~l~~~L  320 (450)
                      +++.|++|.+++..   ||++.++.++++.++..........+..+....+ ...+......+++.++..++.+++.+.+
T Consensus       240 ii~~tl~Ka~gg~~---Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l  316 (401)
T d1fc4a_         240 IITGTLGKALGGAS---GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQM  316 (401)
T ss_dssp             EEEEESSSTTCSSS---CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecccccccCC---cccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhh
Confidence            99999999997543   5999999999988865544332222222222222 2222223334556677888888999999


Q ss_pred             HhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccccccccccccC
Q 013079          321 KKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTS  400 (450)
Q Consensus       321 ~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~  400 (450)
                      ...+..+...                    .++++.+.+.+...+..+.+.|...   | +.++      .+..|...  
T Consensus       317 ~~~g~~~~~~--------------------~~pIv~v~~~~~~~a~~~~~~L~~~---G-i~v~------~i~~PtVp--  364 (401)
T d1fc4a_         317 SAAGFTLAGA--------------------DHAIIPVMLGDAVVAQKFARELQKE---G-IYVT------GFFYPVVP--  364 (401)
T ss_dssp             HHTTCCBCCS--------------------SSSEEEEEEECHHHHHHHHHHHHHT---T-EECC------EECTTSSC--
T ss_pred             cccCCccCCC--------------------CCCEEEEEECCHHHHHHHHHHHHHC---C-ceEE------eECCCCCC--
Confidence            8877643221                    2358888888777777888888753   3 3322      12223221  


Q ss_pred             CCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhcCC
Q 013079          401 SELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDSGV  447 (450)
Q Consensus       401 ~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~~~  447 (450)
                                  .....|||++. ...+++.|+.+.++|+++.++-+
T Consensus       365 ------------~g~~~lRi~~~-a~hT~edId~~v~al~ev~~~lg  398 (401)
T d1fc4a_         365 ------------KGQARIRTQMS-AAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             ------------TTCEEEEEECC-TTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ------------CCCceEEEEEC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence                        12345999999 99999999999999998876544

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.90  E-value=5.8e-23  Score=203.78  Aligned_cols=247  Identities=11%  Similarity=0.057  Sum_probs=160.7

Q ss_pred             CccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhC--------CCeEEEec--ChHHHHHHHHHHH
Q 013079           66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEG--------TEAAYCTA--SDKAGMSAISSVL  134 (450)
Q Consensus        66 tt~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g--------~~~~~~ts--g~~~gt~ai~~al  134 (450)
                      .+++++.+ +++.+.....     ..|.|+.  .....+||+.+|+++.        .+.++.+.  +...+..++..++
T Consensus        44 ~~~~~~~V~~a~~~~~~~~-----~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~  116 (401)
T d7aata_          44 KPYVLNCVRKAEAMIAAKK-----MDKEYLP--IAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFL  116 (401)
T ss_dssp             CCCCCHHHHHHHHHHHHTT-----CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhCC-----CCCCCCC--CCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhh
Confidence            34444444 4444444332     2345653  2334567777777652        23343332  2000235667777


Q ss_pred             HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhh--cCCceEEEEecCCCCcccc
Q 013079          135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAV  205 (450)
Q Consensus       135 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~--~~~t~lv~i~~~~NptG~v  205 (450)
                      +.++.+||+|++++|.|+.+...+.     ..|.+++.++..       |++.+.+.+.  .++++++++++||||||.+
T Consensus       117 ~~l~~pGd~Vlv~~P~y~~y~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~  191 (401)
T d7aata_         117 QRFFKFSRDVYLPKPSWGNHTPIFR-----DAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVD  191 (401)
T ss_dssp             HHHCTTCCEEEEEESCCTTHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCC
T ss_pred             HhhcCCCceEEEecCCCcchhhHHH-----HcCCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCcccc
Confidence            8889999999999999999988875     368888777652       6777776662  3678999999999999999


Q ss_pred             cC---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc------------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHH
Q 013079          206 AN---IPELSRLAHDKGVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVN  270 (450)
Q Consensus       206 ~~---l~~I~~la~~~gi~livD~~~~~~~~~~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~  270 (450)
                      .+   +++|+++|++|++++|+|++|..+.++..            .....+++.|++|.++.+|+|+ ||++++..+.+
T Consensus       192 ~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~Ri-G~~~~~~~~~~  270 (401)
T d7aata_         192 PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERA-GAFTVICRDAE  270 (401)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCE-EEEEEECSSHH
T ss_pred             CCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeecccc-ceeecchHHHH
Confidence            75   77999999999999999999977765421            1134578889999999999999 99987765554


Q ss_pred             HHHHHhhh------hhhccCCCchHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          271 SMMDLHQG------ALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       271 ~l~~~~~~------~~~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      .+......      ......+...+..+...+...       .++....+++.++++.+.+.|++++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  338 (401)
T d7aata_         271 EAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGS  338 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            43322110      111122223333333332211       12334445578888999999998754

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=1.1e-23  Score=206.49  Aligned_cols=196  Identities=18%  Similarity=0.163  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHHHHHhccCCCEEE-Ee-CCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079          101 VLNLSRQMAALEG---TEAAYCTASDKAGMSAISSVLMQLCSSGGHVV-AA-RTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus       101 ~~~l~~~iA~l~g---~~~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi-~~-~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      .+++++..++.++   .+.+++|+|   |++|+..++.++. +||.|+ ++ .|.|+++...+.     ..|.++  ++.
T Consensus        52 ~~~l~~~~~~~~~~~~~e~~~~~~~---~~~a~~~~l~al~-~~~~vi~~~~~~~~~~~~~~~~-----l~g~~~--v~~  120 (366)
T d2aeua1          52 AEKVNEYGLKHLGGDENDKCVGFNR---TSSAILATILALK-PKKVIHYLPELPGHPSIERSCK-----IVNAKY--FES  120 (366)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESS---HHHHHHHHHHHHC-CSEEEEECSSSSCCTHHHHHHH-----HTTCEE--EEE
T ss_pred             HHHHHHHHHHHccCCCccEEEEeCC---HHHHHHHHHHHhC-CCCEEEEecCCCcchhHHHHHH-----hcCCeE--ECC
Confidence            4667777777665   356899999   9999999998865 455554 43 588999888775     356654  566


Q ss_pred             CCHHHHHHhhhcCCceEEEEecCCCC-cccccCHHHHHHHHHhcCCEEEEeCCCCCCC------CCccCCCCeEEEeCCC
Q 013079          176 SDHEMVNSAIVQGRTKVLYFESISNP-TLAVANIPELSRLAHDKGVTVVVDNTFSPLV------LSPARLGADVVVHSIS  248 (450)
Q Consensus       176 ~d~~~l~~ai~~~~t~lv~i~~~~Np-tG~v~~l~~I~~la~~~gi~livD~~~~~~~------~~~~~~g~di~~~S~s  248 (450)
                      +|+++|++++ +++|++|++++|+|| ++.+.++++|+++|+++|+++++|++|+...      ..+...++|++++|+|
T Consensus       121 ~d~e~l~~~i-~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~S~s  199 (366)
T d2aeua1         121 DKVGEILNKI-DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTD  199 (366)
T ss_dssp             SCHHHHHTTC-CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETT
T ss_pred             CCHHHHHHhc-CCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEeccc
Confidence            7999999999 899999999999886 4567899999999999999999999983221      1234558999999999


Q ss_pred             CccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcH-HHHHHHHHHHHHH
Q 013079          249 KFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHL-GLRMKEHCHRALI  315 (450)
Q Consensus       249 K~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l-~~~~~~~~~~~~~  315 (450)
                      |++++  +++ ||+++++++++.++....    ..+...++..++++.++++++ ..|++++.++++.
T Consensus       200 K~~~g--~~~-G~i~~~~~~i~~~~~~~~----~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~~~~~  260 (366)
T d2aeua1         200 KLMEG--PRG-GLLAGKKELVDKIYIEGT----KFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKN  260 (366)
T ss_dssp             SSSSS--CSC-EEEEEEHHHHHHHHHHHH----TTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             ccccc--cce-eEEEecHHHHHHHHHHHh----cccccCCHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            98875  455 999999999999987765    445555555454444444332 2345555444443

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.89  E-value=1.7e-20  Score=183.88  Aligned_cols=289  Identities=13%  Similarity=0.100  Sum_probs=208.0

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      ..+..++||+.||+++|.+.++++++   |..|+..++.++  ..++|.|+.....|.+....+.     ..+.++..++
T Consensus        88 ~~~~h~~LE~~lA~~~g~e~all~~s---G~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~-----ls~a~~~~f~  159 (396)
T d2bwna1          88 TTAYHRRLEAEIAGLHQKEAALVFSS---AYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIK-----RNAGPKRIFR  159 (396)
T ss_dssp             CBHHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHH-----HSCCCEEEEC
T ss_pred             CchHHHHHHHHHHHHhCCCceeeeec---chHHHHHHHHHHhcccCCCceeehhhhhhccchhhh-----ccccCceEee
Confidence            35678999999999999999999999   999999999887  4678888888888888777764     3566777788


Q ss_pred             CCCHHHHHHhhh---cCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCc--------cCCCCe
Q 013079          175 ISDHEMVNSAIV---QGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSP--------ARLGAD  241 (450)
Q Consensus       175 ~~d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~--------~~~g~d  241 (450)
                      ..|++++++.++   ..+.++|+++.+.+..|.+.|+++|.++|++||+.+++|+++  +-+.-..        ..-.+|
T Consensus       160 Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~d  239 (396)
T d2bwna1         160 HNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRID  239 (396)
T ss_dssp             TTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCS
T ss_pred             cchHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeee
Confidence            889888877663   235678999999999999999999999999999999999998  2222111        112479


Q ss_pred             EEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHH-HccCC--cHHHHHHHHHHHHHHHHH
Q 013079          242 VVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFEL-SERIP--HLGLRMKEHCHRALIFAR  318 (450)
Q Consensus       242 i~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~-~~~~~--~l~~~~~~~~~~~~~l~~  318 (450)
                      ++++|++|.+|..|    |++++++++++.++..........+.++...++... +....  ...++..++..+.+++.+
T Consensus       240 i~~gTlsKa~g~~G----g~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~  315 (396)
T d2bwna1         240 IFNGTLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKM  315 (396)
T ss_dssp             EEEEESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecccccccccc----cccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            99999999999764    999999999998876655332233333333322222 11111  223334456777888888


Q ss_pred             HHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHh-hcccccccccccccccccccccccc
Q 013079          319 RMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYL-QNYAQFGFMAVSLGYYETLMSCSGS  397 (450)
Q Consensus       319 ~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l-~~~~~~g~i~vs~G~~~s~~~~~~~  397 (450)
                      .|.+.+..+.. .                   .++++.+.+.+...+..+.+.| +.   .| +.++      .+.+|..
T Consensus       316 ~l~~~g~~~~~-~-------------------~spIvpv~ig~~~~~~~~a~~lL~e---~G-i~v~------~i~~PtV  365 (396)
T d2bwna1         316 RLKALGMPIID-H-------------------GSHIVPVVIGDPVHTKAVSDMLLSD---YG-VYVQ------PINFPTV  365 (396)
T ss_dssp             HHHHHTCCBCC-C-------------------SSSCEEEECCCHHHHHHHHHHHHHH---HC-EECC------EECTTTS
T ss_pred             HHHhcCCCcCC-C-------------------CCCEEEEEeCCHHHHHHHHHHHHHh---CC-EEEE------EECCCcC
Confidence            88887764321 1                   2448889998877677776663 33   23 3332      2223432


Q ss_pred             ccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          398 STSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       398 ~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .              .....|||++. ...+++.|+.|.++|+++
T Consensus       366 p--------------~g~~rlRi~ls-a~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         366 P--------------RGTERLRFTPS-PVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             C--------------TTCCEEEECCC-TTSCHHHHHHHHHHHHHH
T ss_pred             C--------------CCCeeEEEEeC-ccCCHHHHHHHHHHHHHh
Confidence            2              12457999999 999999999999999875

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.8e-21  Score=191.49  Aligned_cols=291  Identities=10%  Similarity=0.091  Sum_probs=186.5

Q ss_pred             hhHHHHHHHHHHHhCC------CeEEEecChHHHHHHHHHHHHHhc---cCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALEGT------EAAYCTASDKAGMSAISSVLMQLC---SSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~------~~~~~tsg~~~gt~ai~~al~~l~---~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ...+++++.+.++++.      +.++||+|   ||+++++++.+++   ++||+|++...++.+......  ..+ .+..
T Consensus        36 ~~~~~~~~~~r~~~~~~~~~~~~~i~~t~s---gT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~--~~~-~~~~  109 (382)
T d2bkwa1          36 SIFQRVLKNTRAVFKSAAASKSQPFVLAGS---GTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADC--LRS-YGAQ  109 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGTCEEEEEESC---TTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHH--HHH-TTCE
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCeEEEEeCc---HHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhh--ccc-cccc
Confidence            3445566666666652      34799999   9999999999986   578999999888877654332  111 3444


Q ss_pred             EEEeCC------CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCC--CCCCCCccCCC
Q 013079          170 TTFVDI------SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTF--SPLVLSPARLG  239 (450)
Q Consensus       170 v~~v~~------~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~--~~~~~~~~~~g  239 (450)
                      +..+..      .+.+.+++++...+++++++.+.+|.||...|++++.+.|+++  ++++++|+++  +.+.++...++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~g  189 (382)
T d2bkwa1         110 VDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWG  189 (382)
T ss_dssp             EEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTT
T ss_pred             cccccccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeecccccccccccccccC
Confidence            443322      2677787777567899999999999999999999999999876  5999999998  77788888899


Q ss_pred             CeEEEeCCCCcc-ccCccceEEEEEcCHHHHHHHHHHhhh----------------------hhhccCCCchHHHHHHHH
Q 013079          240 ADVVVHSISKFI-SGGADIIAGAVCGPANLVNSMMDLHQG----------------------ALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       240 ~di~~~S~sK~~-g~~g~~igG~l~~~~~~~~~l~~~~~~----------------------~~~~~g~~~~~~~a~~~~  296 (450)
                      +|+++.|.||++ |++|  + |+++.+++.++.+.....+                      .......+++....+.+.
T Consensus       190 iD~~~~s~~K~l~gP~G--~-g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~  266 (382)
T d2bkwa1         190 VDFALTASQKAIGAPAG--L-SISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLD  266 (382)
T ss_dssp             CSEEEEESSSTTCCCSC--E-EEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHH
T ss_pred             eeEEeecccccCcCCCc--h-hhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHH
Confidence            999999999998 6677  5 8888888776654221100                      000122233332222222


Q ss_pred             ccCCc-----HHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHH
Q 013079          297 ERIPH-----LGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMN  370 (450)
Q Consensus       297 ~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~  370 (450)
                      ..++.     +..+.++++++++++.+.+.+... ....+.....              ....+++|.+++..+...+  
T Consensus       267 ~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~--------------~s~~v~~~~~~~~~~~~~~--  330 (382)
T d2bkwa1         267 VALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNM--------------SAHGLTAVYVADPPDVIAF--  330 (382)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTT--------------BCSSCEEEECSCHHHHHHH--
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhc--------------cCCcEEEEcCCCHHHHHHH--
Confidence            22222     344556667777888888866432 2221111110              1234678888866544444  


Q ss_pred             HhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHh
Q 013079          371 YLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       371 ~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~  442 (450)
                       |+.   +| |.++.|..+.+                      .++.+||| +| ..++++.++.+.++|+.+
T Consensus       331 -L~~---~g-i~i~~G~~~~~----------------------~~~~~Ri~~~G-~~~~~e~i~~l~~~l~~i  375 (382)
T d2bkwa1         331 -LKS---HG-VVIAGGIHKDI----------------------GPKYIRIGHMG-VTACNKNLPYMKNCFDLI  375 (382)
T ss_dssp             -HHH---TT-EECBCCCCTTT----------------------GGGEEEECCCG-GGTSSTTCTHHHHHHHHH
T ss_pred             -HHH---CC-eEEECCCChhh----------------------cCCEEEEeCCc-CCCCHHHHHHHHHHHHHH
Confidence             443   23 56666633211                      14679999 99 644444445555555444

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=3.7e-21  Score=187.47  Aligned_cols=293  Identities=14%  Similarity=0.094  Sum_probs=184.0

Q ss_pred             cCCCChhHHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhH-HHHHHHhCCCccCe
Q 013079           94 SRHFNPTVLNLSRQMAALEGTEA----AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGT-HALLTHFFPRACNI  168 (450)
Q Consensus        94 ~r~~~~~~~~l~~~iA~l~g~~~----~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~-~~~~~~~~~~~~g~  168 (450)
                      +.+.....+++++++++++|+++    +++|+|   ||+++++++.++..+++.+++....+... .........  ...
T Consensus        28 ~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s---~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  102 (361)
T d1m32a_          28 DDYNIGVVEQIRQQLTALATASEGYTSVLLQGS---GSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMG--IAH  102 (361)
T ss_dssp             HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESC---HHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHT--CCE
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCC---HHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhh--ccc
Confidence            33345678999999999999842    578899   99999999999988877666655554433 322222211  222


Q ss_pred             eEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCe
Q 013079          169 TTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGAD  241 (450)
Q Consensus       169 ~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~d  241 (450)
                      .....+..     +.+...... .+++++|++++.+|.||.++|+++|.++|+++|+++++|.++  +...++..++++|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D  181 (361)
T d1m32a_         103 HAYDCGEVARPDVQAIDAILNA-DPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHID  181 (361)
T ss_dssp             EEEECCTTSCCCHHHHHHHHHH-CTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCS
T ss_pred             ccccccccCCccchhhHHHHHh-ccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcccccccccccc
Confidence            22222222     223334444 689999999999999999999999999999999999999998  6667788888999


Q ss_pred             EEEeCCCCcccc-CccceEEEEEcCHHHHHHHHH---------------HhhhhhhccCCCchHHHHH---HHHccC--C
Q 013079          242 VVVHSISKFISG-GADIIAGAVCGPANLVNSMMD---------------LHQGALMLLGPTMNPKVAF---ELSERI--P  300 (450)
Q Consensus       242 i~~~S~sK~~g~-~g~~igG~l~~~~~~~~~l~~---------------~~~~~~~~~g~~~~~~~a~---~~~~~~--~  300 (450)
                      +++.|.+|++++ +|  + |+++.+++..+.+..               ...... ....++......   ..+...  +
T Consensus       182 ~~~~s~~K~l~gp~G--~-g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~l~~~~~~  257 (361)
T d1m32a_         182 YLISSANKCIQGVPG--F-AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHG-KWRFTSPTHTVLAFAQALKELAKE  257 (361)
T ss_dssp             EEEEESSSTTCCCSS--E-EEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTT-CCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEeeecccccCCCC--c-eEEEechhhhhhhccccccccccchhhhcccccccc-ccCCCCCchhhhHHHHHHHHHHHh
Confidence            999999999865 45  5 888777655432211               000000 111122211111   111111  1


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhcccc
Q 013079          301 -HLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQNYAQ  377 (450)
Q Consensus       301 -~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~~~~  377 (450)
                       ......++.....+.+.+.++..+..+..+.     .+           ....+++|.++.  ......+...|...+ 
T Consensus       258 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-----~~-----------rs~~v~~~~~p~~~~~~~~~~~~~l~~~g-  320 (361)
T d1m32a_         258 GGVAARHQRYQQNQRSLVAGMRALGFNTLLDD-----EL-----------HSPIITAFYSPEDPQYRFSEFYRRLKEQG-  320 (361)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG-----GG-----------BCSSEEEEECCCCTTCCHHHHHHHHHHTT-
T ss_pred             cchhhhHHHHHHHHHHHHHHHhhcCCcccCCh-----hh-----------cCCcEEEEECCCCCCCCHHHHHHHHHHCC-
Confidence             1223334456666778888887775433221     10           123478888862  123456777776533 


Q ss_pred             ccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHh
Q 013079          378 FGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       378 ~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~  442 (450)
                         +.++.|+.+                        ..+.+||| +| .. .+++|+.|.++|+.+
T Consensus       321 ---i~i~~G~~~------------------------~~~~~Ris~~g-~~-~~~di~~lv~al~~~  357 (361)
T d1m32a_         321 ---FVIYPGKVS------------------------QSDCFRIGNIG-EV-YAADITALLTAIRTA  357 (361)
T ss_dssp             ---EECEECCCS------------------------SSCEEEEECCS-SC-CHHHHHHHHHHHHHH
T ss_pred             ---cEEECCCcC------------------------CCCEEEEeCCC-CC-CHHHHHHHHHHHHHH
Confidence               555555221                        14679999 46 44 456688888888765

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.88  E-value=2.7e-21  Score=192.31  Aligned_cols=226  Identities=10%  Similarity=0.014  Sum_probs=148.8

Q ss_pred             CCccccCCCChhHHHHHHHHHHHhC--------CCe--EEEecChHHHHHHHHHHHHHh-------ccCCCEEEEeCCCc
Q 013079           89 DFFIYSRHFNPTVLNLSRQMAALEG--------TEA--AYCTASDKAGMSAISSVLMQL-------CSSGGHVVAARTLY  151 (450)
Q Consensus        89 ~~~~y~r~~~~~~~~l~~~iA~l~g--------~~~--~~~tsg~~~gt~ai~~al~~l-------~~~gd~Vi~~~~~y  151 (450)
                      ..|.|+-  .....+||+.+++++.        .+.  ++.|++   ++.++..+...+       +.+||.|++++|.|
T Consensus        66 ~~~~Y~p--~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y  140 (412)
T d1ajsa_          66 LNHEYLP--ILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG---GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTW  140 (412)
T ss_dssp             CCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCC
T ss_pred             cCCCCCC--CCCCHHHHHHHHHHHhccCCcccccccceeecccc---hhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcc
Confidence            3466663  3345668888888752        222  456777   776666655443       68999999999999


Q ss_pred             hhHHHHHHHhCCCccCeeEE-Ee---CC----CCHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhc
Q 013079          152 GGTHALLTHFFPRACNITTT-FV---DI----SDHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDK  218 (450)
Q Consensus       152 ~~~~~~~~~~~~~~~g~~v~-~v---~~----~d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~  218 (450)
                      +.+...+..     .|.+.. ..   +.    .|.+.+++.+.  .++++++++++||||||.+.+   +++|+++|++|
T Consensus       141 ~~y~~~~~~-----~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~  215 (412)
T d1ajsa_         141 ENHNGVFTT-----AGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR  215 (412)
T ss_dssp             THHHHHHHH-----TTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHH-----cCCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhC
Confidence            999988862     454322 21   11    16666655531  568899999999999999975   88999999999


Q ss_pred             CCEEEEeCCCCCCCCCcc------------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhh------hhh
Q 013079          219 GVTVVVDNTFSPLVLSPA------------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQ------GAL  280 (450)
Q Consensus       219 gi~livD~~~~~~~~~~~------------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~------~~~  280 (450)
                      |+++++|++|..+.++..            .....+++.|+||.++++|+|+ ||++.+......+.....      ...
T Consensus       216 ~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (412)
T d1ajsa_         216 FLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERV-GNLTVVAKEPDSILRVLSQMQKIVRVT  294 (412)
T ss_dssp             TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCE-EEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCc-cccccchhHHHHHHHHHHHHHHHhhcc
Confidence            999999999977765421            1145788999999999999999 888776544433322111      011


Q ss_pred             hccCCCchHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          281 MLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       281 ~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      ....+...+..+..+....       .++....+++.++++.+.+.|++++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~  346 (412)
T d1ajsa_         295 WSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT  346 (412)
T ss_dssp             TSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1222333333333332211       22334455678888999999988754

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.87  E-value=1.6e-20  Score=183.88  Aligned_cols=300  Identities=14%  Similarity=0.147  Sum_probs=201.5

Q ss_pred             ccCCCChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           93 YSRHFNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ++.......+++++.|++++|++   .++|++|   ||+++++++..++.+|+++++....|.+........  . .+..
T Consensus        45 r~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~---gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~  118 (377)
T d1vjoa_          45 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGT---GTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAG--R-YGAD  118 (377)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHH--H-TTCE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCc---HHHHHHHHHHhccccccccceeeechhhhhhhhhhh--h-hccc
Confidence            45555678899999999999974   3677888   999999999999999999998888877654333211  1 2333


Q ss_pred             EEEeCC-----CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeE
Q 013079          170 TTFVDI-----SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADV  242 (450)
Q Consensus       170 v~~v~~-----~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di  242 (450)
                      ...+..     .+.+..+....+.++++|++++.+|.||.+.|+++|.++||++|+++++|+++  +.+.++...+++|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~  198 (377)
T d1vjoa_         119 VRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDL  198 (377)
T ss_dssp             EEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSE
T ss_pred             ccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhcccccccce
Confidence            333322     14555555543678999999999999999999999999999999999999998  56677888889999


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh----------------hhhccCCCchHHHHHHHHc-----cCCc
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----------------ALMLLGPTMNPKVAFELSE-----RIPH  301 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~----------------~~~~~g~~~~~~~a~~~~~-----~~~~  301 (450)
                      ++.|.+|++++++.  +|+++.++..++.......+                .......++.......+..     ....
T Consensus       199 ~~~s~~K~~~gp~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g  276 (377)
T d1vjoa_         199 AYSCSQKGLGCSPG--ASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEG  276 (377)
T ss_dssp             EECCSSSTTCSCSS--CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHC
T ss_pred             eeecccccccCCCE--EEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcC
Confidence            99999998876653  37777777766654321110                0011122222211111111     1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccc
Q 013079          302 LGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFM  381 (450)
Q Consensus       302 l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i  381 (450)
                      ...+.++.+++..++.+.|.+.+.....+.-.                ...++++|.+++......+...|..  .+| |
T Consensus       277 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----------------rs~~v~~~~~p~~~~~~~l~~~L~~--~~g-I  337 (377)
T d1vjoa_         277 LANCWQRHQKNVEYLWERLEDIGLSLHVEKEY----------------RLPTLTTVCIPDGVDGKAVARRLLN--EHN-I  337 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGG----------------BCSSEEEEECCTTCCHHHHHHHHHH--HHC-E
T ss_pred             chHHHHHHHHHhhhhhhhhhccCceeecChHh----------------cCCeEEEEECCCCCCHHHHHHHHHh--cCC-E
Confidence            34555666777888888888876643322100                1345888998743335667666643  233 5


Q ss_pred             ccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHhh
Q 013079          382 AVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       382 ~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      .++.|..+                       ..++.|||| +| ..++.+++++|.++|+++.
T Consensus       338 ~v~~G~~~-----------------------~~~~~~Ris~~g-~~~t~edi~~lv~al~~~l  376 (377)
T d1vjoa_         338 EVGGGLGE-----------------------LAGKVWRVGLMG-FNSRKESVDQLIPALEQVL  376 (377)
T ss_dssp             ECEECCGG-----------------------GTTTEEEEECCG-GGCSHHHHHHHHHHHHHHH
T ss_pred             EEecCccc-----------------------ccCCEEEEecCc-CCCCHHHHHHHHHHHHHHh
Confidence            66666321                       114689999 79 8777788999999998764

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.87  E-value=1.4e-20  Score=185.16  Aligned_cols=301  Identities=15%  Similarity=0.185  Sum_probs=193.3

Q ss_pred             ccCCCChhHHHHHHHHHHHhCCC--e-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           93 YSRHFNPTVLNLSRQMAALEGTE--A-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~~--~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      ++......++++++.|+++++++  . ++|++|   ||+++++++..++.+|+++++....+.+.......  .+ .+..
T Consensus        44 r~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gs---gT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~--~~-~~~~  117 (388)
T d2ch1a1          44 FHAELFRTMDEVKDGLRYIFQTENRATMCVSGS---AHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMS--ER-YGAD  117 (388)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSC---HHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHH--HH-TTCE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCc---HHHHHHHHHHHhccccccccccccccccccchhhh--hh-hccc
Confidence            45556678899999999999975  2 467788   99999999999999999999888777765544321  11 2333


Q ss_pred             EEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeE
Q 013079          170 TTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADV  242 (450)
Q Consensus       170 v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di  242 (450)
                      ...+...     +.+.++.+....+++++++.+.+|.||.+.|+++|.++||++|+++++|.++  +...++..++++|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~  197 (388)
T d2ch1a1         118 VRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDA  197 (388)
T ss_dssp             EEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCE
T ss_pred             ccccccccccccchhhhhhhhccCCcceeeeeecccccccccchhhhcchhccccceeeeeeeecccccccchhccCceE
Confidence            3333322     5666666664678999999999999999999999999999999999999998  66677888889999


Q ss_pred             EEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhh-------------------hhccCCCchHHHHHHHHccC----
Q 013079          243 VVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGA-------------------LMLLGPTMNPKVAFELSERI----  299 (450)
Q Consensus       243 ~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~-------------------~~~~g~~~~~~~a~~~~~~~----  299 (450)
                      ++.|.+|++++++. + |+++.++..++.+.....+.                   ......++.......+...+    
T Consensus       198 ~~~s~~K~~~gp~G-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~  275 (388)
T d2ch1a1         198 VYTGAQKVLGAPPG-I-TPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIA  275 (388)
T ss_dssp             EECCCC-CCCCCSS-C-EEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEccccccCCCCe-E-EEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHH
Confidence            99999999976664 3 88888877766543211000                   00112222222222211111    


Q ss_pred             -CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079          300 -PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF  378 (450)
Q Consensus       300 -~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~  378 (450)
                       .....+.++.......+...+...+.....+.    +.+           ...++++|.++...+...+...|..  ++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------rs~~v~~~~~p~g~~~~~l~~~l~~--~~  338 (388)
T d2ch1a1         276 EEGLENQIKRRIECAQILYEGLGKMGLDIFVKD----PRH-----------RLPTVTGIMIPKGVDWWKVSQYAMN--NF  338 (388)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCS----GGG-----------BCTTEEEEECCTTCCHHHHHHHHHH--HH
T ss_pred             HhhhHHHHHHHHHHHHHHHhhhhhcccccccCC----HHH-----------hCCeEEEEECCCCCCHHHHHHHHhh--cC
Confidence             12223333344444445555554443222111    110           1345889999743234566666643  23


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHHHHhh
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMS-VGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS-~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      | |.++.|..+.                       ..+.+||| +| ..++.+.|+.|.++|+++.
T Consensus       339 g-I~v~~G~~~~-----------------------~~~~~RIs~~g-~~~t~edI~~ll~alke~L  379 (388)
T d2ch1a1         339 S-LEVQGGLGPT-----------------------FGKAWRVGIMG-ECSTVQKIQFYLYGFKESL  379 (388)
T ss_dssp             C-BCCBCCCGGG-----------------------TTTEEEEECCG-GGCSHHHHHHHHHHHHHHH
T ss_pred             C-EEEeCCCccc-----------------------cCCEEEEcCCc-CCCCHHHHHHHHHHHHHHH
Confidence            3 5677664321                       14689999 89 7666667777777666553

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.86  E-value=4.1e-20  Score=183.67  Aligned_cols=226  Identities=12%  Similarity=0.063  Sum_probs=150.1

Q ss_pred             CCCccccCCCChhHHHHHHHHHHHhC--------CCeE--EEecChHHHHHHHHHHH--HHhccCCCEEEEeCCCchhHH
Q 013079           88 RDFFIYSRHFNPTVLNLSRQMAALEG--------TEAA--YCTASDKAGMSAISSVL--MQLCSSGGHVVAARTLYGGTH  155 (450)
Q Consensus        88 ~~~~~y~r~~~~~~~~l~~~iA~l~g--------~~~~--~~tsg~~~gt~ai~~al--~~l~~~gd~Vi~~~~~y~~~~  155 (450)
                      ...|.|+-  .....+||+.+++++.        .+.+  +.+.+   ++.++..++  ..++.+||.|++++|.|+.+.
T Consensus        64 ~~~~~Y~p--~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~  138 (412)
T d1yaaa_          64 SYNHEYLG--ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS---GTGALHISAKFFSKFFPDKLVYLSKPTWANHM  138 (412)
T ss_dssp             TCCCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH---HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHH
T ss_pred             ccCCCCCC--CCCCHHHHHHHHHHHhcccCccccccceeEEeccc---chhHHHHHHHHHhccCCCCEEecccccCchhH
Confidence            34566763  3345678888887652        1222  33445   555554444  345689999999999999998


Q ss_pred             HHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEE
Q 013079          156 ALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVV  223 (450)
Q Consensus       156 ~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~li  223 (450)
                      ..+.     ..|.++..++..       +.+.+.+.+.  +++++++++++||||||.+.+   +++|+++|++++++++
T Consensus       139 ~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii  213 (412)
T d1yaaa_         139 AIFE-----NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIAL  213 (412)
T ss_dssp             HHHH-----TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHH-----HcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEe
Confidence            8875     367777766642       6666666552  356789999999999999975   8899999999999999


Q ss_pred             EeCCCCCCCCCc---------------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHH-------H----HHhh
Q 013079          224 VDNTFSPLVLSP---------------ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM-------M----DLHQ  277 (450)
Q Consensus       224 vD~~~~~~~~~~---------------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l-------~----~~~~  277 (450)
                      +|++|..+.++.               ......+++.|+||.++++|+|+ ||++++.+++..+       .    ....
T Consensus       214 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (412)
T d1yaaa_         214 FDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERV-GCFHLALTKQAQNKTIKPAVTSQLAKIIR  292 (412)
T ss_dssp             EEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCE-EEEEEECCSCTTHHHHHHHHHHHHHHHHH
T ss_pred             ecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCce-EEEEEchhhhhhHHHHHHHHHHHHHHHHH
Confidence            999997776532               11245699999999999999999 9988764332111       1    1111


Q ss_pred             hhhhccCCCchHHHHHHHHccC-------CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          278 GALMLLGPTMNPKVAFELSERI-------PHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       278 ~~~~~~g~~~~~~~a~~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                       ......+...+..+...+...       +++....++++++++.+.+.|++++.
T Consensus       293 -~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~  346 (412)
T d1yaaa_         293 -SEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGT  346 (412)
T ss_dssp             -TTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             -HHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             111222333444443333321       22344455678888999999988754

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1e-20  Score=187.04  Aligned_cols=225  Identities=14%  Similarity=0.088  Sum_probs=148.3

Q ss_pred             CccccCCCChhHHHHHHHHHHHhC--------CCe--EEEecChHHHHHHHHHHH--HHhccCCCEEEEeCCCchhHHHH
Q 013079           90 FFIYSRHFNPTVLNLSRQMAALEG--------TEA--AYCTASDKAGMSAISSVL--MQLCSSGGHVVAARTLYGGTHAL  157 (450)
Q Consensus        90 ~~~y~r~~~~~~~~l~~~iA~l~g--------~~~--~~~tsg~~~gt~ai~~al--~~l~~~gd~Vi~~~~~y~~~~~~  157 (450)
                      .|.|+-  .....+||+.+|+++.        .+.  .+.|.+   |+.++.+++  ...+.+||.|++++|.|+.+...
T Consensus        62 ~~~Y~p--~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~  136 (396)
T d2q7wa1          62 TKNYLG--IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG---GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSV  136 (396)
T ss_dssp             CCCCCC--TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH---HHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHH
T ss_pred             CCCCCC--CcCCHHHHHHHHHHHHhhcCCcccccceeeeccch---HHHHHHHHHHHHhhcccceEEEEecCCCccchHH
Confidence            355653  3345678888887652        122  345666   655554444  44578999999999999999988


Q ss_pred             HHHhCCCccCeeEEEeCCC-------CHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEe
Q 013079          158 LTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVD  225 (450)
Q Consensus       158 ~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD  225 (450)
                      +.     ..|.++..++..       +...+.+...  .++++++++++||||||.+.+   +++|+++|+++++++|+|
T Consensus       137 ~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~D  211 (396)
T d2q7wa1         137 FN-----SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFD  211 (396)
T ss_dssp             HH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HH-----HcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEe
Confidence            75     367777776642       4444444331  457889999999999999975   669999999999999999


Q ss_pred             CCCCCCCCCcc-----------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh-----hhhccC-CCch
Q 013079          226 NTFSPLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG-----ALMLLG-PTMN  288 (450)
Q Consensus       226 ~~~~~~~~~~~-----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~-----~~~~~g-~~~~  288 (450)
                      ++|..+.++..           .....+++.|++|.++.+|+|+ ||++.+...++.+......     ...... +...
T Consensus       212 e~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (396)
T d2q7wa1         212 FAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERV-GACTLVAADSETVDRAFSQMKAAIRANYSNPPAHG  290 (396)
T ss_dssp             ESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCC-EEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred             ccccccccCCccCchHhhhhhhhcccccccccccccccccCCCc-cccccchhHHHHHHHhhhhhhhhhhccccCCCHHH
Confidence            99977765421           1145688899999999999999 9988776555444332210     001122 2222


Q ss_pred             HHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          289 PKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       289 ~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      +.++..+...       .+++....++++++++.+.+.|++++.
T Consensus       291 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~  334 (396)
T d2q7wa1         291 ASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA  334 (396)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3333223221       122333445578889999999998764

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=6.1e-22  Score=196.09  Aligned_cols=174  Identities=11%  Similarity=0.069  Sum_probs=127.9

Q ss_pred             CCCccccCCCChhHHHHHHHHHHHhC--------CCeEEEecC-hHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHH
Q 013079           88 RDFFIYSRHFNPTVLNLSRQMAALEG--------TEAAYCTAS-DKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALL  158 (450)
Q Consensus        88 ~~~~~y~r~~~~~~~~l~~~iA~l~g--------~~~~~~tsg-~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~  158 (450)
                      ...+.|+-  .....+||+.+|+++.        .+.++.+.+ ..++..++.+++..++.+||+|++++|.|+.+...+
T Consensus        61 ~~~~~Y~p--~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~  138 (397)
T d3tata_          61 HGASLYLP--MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIF  138 (397)
T ss_dssp             CSSBCCCC--TTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHH
T ss_pred             ccCCCCCC--cccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHH
Confidence            44566663  3345678999998764        234554443 111223455666667899999999999999999888


Q ss_pred             HHhCCCccCeeEEEeCCC-------CHHHHHHhhh--cCCceEEEEecCCCCcccccC---HHHHHHHHHhcCCEEEEeC
Q 013079          159 THFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVAN---IPELSRLAHDKGVTVVVDN  226 (450)
Q Consensus       159 ~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~~---l~~I~~la~~~gi~livD~  226 (450)
                      .     ..|.++..++..       |.+++.+.+.  .++++++++.+||||||.+.+   +++|+++|+++++++++|+
T Consensus       139 ~-----~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De  213 (397)
T d3tata_         139 A-----GAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDI  213 (397)
T ss_dssp             H-----TTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECB
T ss_pred             H-----HcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeeh
Confidence            6     467788887753       5666666542  356789999999999999975   7799999999999999999


Q ss_pred             CCCCCCCCcc-----------CCCCeEEEeCCCCccccCccceEEEEEcCHHHH
Q 013079          227 TFSPLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGPANLV  269 (450)
Q Consensus       227 ~~~~~~~~~~-----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~  269 (450)
                      +|..+.++..           .....+++.|+||.++++|+|+ ||++.+..++
T Consensus       214 ~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~Ri-G~~~~~~~~~  266 (397)
T d3tata_         214 AYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERV-GGLSVMCEDA  266 (397)
T ss_dssp             SCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCC-BCCEEECSST
T ss_pred             hhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccc-cccccchhHH
Confidence            9977765421           1134689999999999999999 9887665443

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.1e-20  Score=186.75  Aligned_cols=243  Identities=14%  Similarity=0.108  Sum_probs=152.5

Q ss_pred             CccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHh----CC---CeEEEecChHHHHHH--HHHHHH
Q 013079           66 ATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALE----GT---EAAYCTASDKAGMSA--ISSVLM  135 (450)
Q Consensus        66 tt~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~----g~---~~~~~tsg~~~gt~a--i~~al~  135 (450)
                      .+++++.+ +++.+..+..     ..|.|+..  ....+||+.+++++    +.   ...+.|.+   |+.+  +.+.+.
T Consensus        42 ~~~~~~~V~~A~~~~~~~~-----~~~~Y~p~--~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~  111 (394)
T d2ay1a_          42 HTPIMRAVHAAEQRMLETE-----TTKTYAGL--SGEPEFQKAMGELILGDGLKSETTATLATVG---GTGALRQALELA  111 (394)
T ss_dssp             CCCCCHHHHHHHHHHHHHC-----CCCCCCCS--SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEH---HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhCC-----CCCCCCCC--CCCHHHHHHHHHHHhccccccccccceeccC---chHHHHHHHHHh
Confidence            34444444 5555554432     23566632  23455777777764    22   23455665   5544  555556


Q ss_pred             HhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-------CHHHHHHhhh--cCCceEEEEecCCCCccccc
Q 013079          136 QLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-------DHEMVNSAIV--QGRTKVLYFESISNPTLAVA  206 (450)
Q Consensus       136 ~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-------d~~~l~~ai~--~~~t~lv~i~~~~NptG~v~  206 (450)
                      .+..+||.|++++|.|+.+...+.     ..|.++..++..       +.+++++...  .++++++++++||||||.+.
T Consensus       112 ~~~~~gd~V~~p~p~~~~y~~~~~-----~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~  186 (394)
T d2ay1a_         112 RMANPDLRVFVSDPTWPNHVSIMN-----FMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL  186 (394)
T ss_dssp             HHHCTTCCEEEEESCCHHHHHHHH-----HHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCC
T ss_pred             hhcCCceEEEEecccccchHHHHH-----HcCCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCC
Confidence            667899999999999999988886     256666665532       3444444331  45678888899999999997


Q ss_pred             C---HHHHHHHHHhcCCEEEEeCCCCCCCCCcc-----------CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHH
Q 013079          207 N---IPELSRLAHDKGVTVVVDNTFSPLVLSPA-----------RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSM  272 (450)
Q Consensus       207 ~---l~~I~~la~~~gi~livD~~~~~~~~~~~-----------~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l  272 (450)
                      +   +++|+++|+++++++|+|++|..+.++..           .....+++.|++|.++.+|+|+ ||++.+....+..
T Consensus       187 s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~-G~~~~~~~~~~~~  265 (394)
T d2ay1a_         187 TLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERT-GCLLALCADAATR  265 (394)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCE-EEEEEECSSHHHH
T ss_pred             CHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccc-cchhhchhHHHHH
Confidence            5   77999999999999999999987766421           1134678889999999999998 8887765544433


Q ss_pred             HHHhhh------hhhccCCCchHHHHHHHHcc-------CCcHHHHHHHHHHHHHHHHHHHHhCC
Q 013079          273 MDLHQG------ALMLLGPTMNPKVAFELSER-------IPHLGLRMKEHCHRALIFARRMKKLG  324 (450)
Q Consensus       273 ~~~~~~------~~~~~g~~~~~~~a~~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~  324 (450)
                      ......      ......+...+..+......       .+++....+++.++++.+.+.|++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~  330 (394)
T d2ay1a_         266 ELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLS  330 (394)
T ss_dssp             HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222110      10112222222222222221       11223344556778888888888764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4e-20  Score=177.15  Aligned_cols=314  Identities=19%  Similarity=0.139  Sum_probs=189.6

Q ss_pred             ccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCE
Q 013079           64 ASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGH  143 (450)
Q Consensus        64 ~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~  143 (450)
                      ++.|.+.|.++.+..+.+...|    ...||  ..|.+.+|++.||+++|.+.+++++|   ||+|+.++++++..+||.
T Consensus         5 ~~~~~t~p~p~v~~A~~~a~~g----~~~yg--~~p~~~~le~~lA~~~G~~~~~~~~s---Gt~A~~~al~a~~~~g~~   75 (343)
T d1m6sa_           5 RSDTVTKPTEEMRKAMAQAEVG----DDVYG--EDPTINELERLAAETFGKEAALFVPS---GTMGNQVSIMAHTQRGDE   75 (343)
T ss_dssp             SCGGGCCCCHHHHHHHHTCCCC----CGGGT--CCHHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHHCCTTCE
T ss_pred             ccccCCCCCHHHHHHHHhhhcC----CcccC--CCHHHHHHHHHHHHHHCCCeEEEeCC---HHHHHHHHHHHHhccCCc
Confidence            4556556666555544443322    23465  46899999999999999999999999   999999999999999999


Q ss_pred             EEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----CCHHHHHHhhhcC------CceEE-EEecCCCCcccccC---HH
Q 013079          144 VVAARTLYGGTHALLTHFFPRACNITTTFVDI----SDHEMVNSAIVQG------RTKVL-YFESISNPTLAVAN---IP  209 (450)
Q Consensus       144 Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----~d~~~l~~ai~~~------~t~lv-~i~~~~NptG~v~~---l~  209 (450)
                      +++..+.|..+........  ..+..+..++.    .|++.+++.+ ..      ++..+ ....++|+.|.+.|   ++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  152 (343)
T d1m6sa_          76 VILEADSHIFWYEVGAMAV--LSGVMPHPVPGKNGAMDPDDVRKAI-RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIK  152 (343)
T ss_dssp             EEEETTCHHHHSSTTHHHH--HTCCEEEEECEETTEECHHHHHHHS-CCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred             eeccccccceeeecccccc--cccceeeccccccCccCHHHHHHhh-hhhhcccccccccccccccccCCceecCHHHHH
Confidence            9999988876543221111  12333333332    2888888888 43      34444 44567788888765   55


Q ss_pred             HHHHHHHhcCCEEEEeCCCCCCCC-----Ccc--CCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhc
Q 013079          210 ELSRLAHDKGVTVVVDNTFSPLVL-----SPA--RLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALML  282 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~~~~~~-----~~~--~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~  282 (450)
                      +|.++|+++|+++++|++++....     ...  ....+..+.+.+|..++..   +|+++...+.+......+...  .
T Consensus       153 ~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~--~  227 (343)
T d1m6sa_         153 EICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV---GSVVVGDRDFIERARKARKML--G  227 (343)
T ss_dssp             HHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccc---cccccccHHHHhhhHhhCccc--c
Confidence            777888999999999999833211     110  0124455555555554333   377777877776665554421  2


Q ss_pred             cCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC
Q 013079          283 LGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET  361 (450)
Q Consensus       283 ~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~  361 (450)
                      .+.......+............+.+...++..++.+.+.+.+. ....|.                   ..+++++.+++
T Consensus       228 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~v~~~~~~  288 (343)
T d1m6sa_         228 GGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDV-------------------KTNMVILRTDN  288 (343)
T ss_dssp             CCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGC-------------------CSSEEEEECTT
T ss_pred             cccchhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCC-------------------CceEEEEEeCC
Confidence            2222222222121111111111223334444555556655443 222221                   24588888873


Q ss_pred             -HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          362 -EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       362 -~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                       ...+.+|.+.|..   .| +.++..                           .++.|||+++ ...+++.++.+.++|+
T Consensus       289 ~~~~a~~l~~~L~~---~G-i~v~~~---------------------------~~~~iRi~~~-~~~t~edid~~v~~l~  336 (343)
T d1m6sa_         289 LKVNAHGFIEALRN---SG-VLANAV---------------------------SDTEIRLVTH-KDVSRNDIEEALNIFE  336 (343)
T ss_dssp             SSSCHHHHHHHHHH---HT-EECEEE---------------------------ETTEEEEECC-TTSCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHH---CC-CEEecC---------------------------CCCEEEEECC-CCCCHHHHHHHHHHHH
Confidence             2235678888775   33 332210                           1467999999 8888888888888888


Q ss_pred             Hhhhc
Q 013079          441 RMQDS  445 (450)
Q Consensus       441 ~~~~~  445 (450)
                      ++.++
T Consensus       337 ~v~~~  341 (343)
T d1m6sa_         337 KLFRK  341 (343)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77543

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.84  E-value=1.1e-18  Score=170.91  Aligned_cols=213  Identities=17%  Similarity=0.195  Sum_probs=165.4

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .|.++++|+.+|+++|.+.+++|+|   ||+|+.+++.++ +++||+|++++.+|.++...+.     ..|..+++++.+
T Consensus        30 G~~v~~~E~~la~~~g~~~ai~~~s---gt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~-----~~g~~pv~~d~~  101 (376)
T d1mdoa_          30 GPKNQELEAAFCRLTGNQYAVAVSS---ATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIV-----LLGANPVMVDVD  101 (376)
T ss_dssp             SHHHHHHHHHHHHHHCCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHH-----HTTCEEEEECBC
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCC---HHHHHHHHHHHhCCCCCCEEEEecccccccccchh-----ccccceeeeccc
Confidence            5889999999999999999999999   999999999998 7899999999999999998885     368888888765


Q ss_pred             ------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCC---ccCCCCeEEEeC
Q 013079          177 ------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLS---PARLGADVVVHS  246 (450)
Q Consensus       177 ------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~---~~~~g~di~~~S  246 (450)
                            |+++|++++ +++|++|++.   |..|...|+++|.++|+++|+++|+|++++.. .+.   ....|..+.++.
T Consensus       102 ~~~~~~d~~~l~~~i-~~~tkaIi~~---h~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~  177 (376)
T d1mdoa_         102 RDTLMVTPEHIEAAI-TPQTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFH  177 (376)
T ss_dssp             TTTCCBCHHHHHHHC-CTTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECC
T ss_pred             ccccCCCHHHHHHhc-CCCCeEEEEe---CCCCCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCC
Confidence                  899999999 8899999864   56899999999999999999999999998322 111   223354555566


Q ss_pred             CCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhh--------------------ccCCCchHHHHHHHHccCCcHHHH
Q 013079          247 ISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM--------------------LLGPTMNPKVAFELSERIPHLGLR  305 (450)
Q Consensus       247 ~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~--------------------~~g~~~~~~~a~~~~~~~~~l~~~  305 (450)
                      .+|.++.++   ||+++. ++++.+.++..+.....                    .....+....|+.....+..+++.
T Consensus       178 ~~K~l~~g~---GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~~~~  254 (376)
T d1mdoa_         178 AIKNITCAE---GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDAL  254 (376)
T ss_dssp             TTSSSCSSS---CEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHH
T ss_pred             CcCCCCCCC---CCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhhhHH
Confidence            679998544   577655 56677777665432100                    011223445555555566777888


Q ss_pred             HHHHHHHHHHHHHHHHhCCC
Q 013079          306 MKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       306 ~~~~~~~~~~l~~~L~~~~~  325 (450)
                      .++.+++++++.+.|++.+.
T Consensus       255 ~~~r~~~~~~~~~~L~~~~~  274 (376)
T d1mdoa_         255 NARRAAIAAQYHQAMADLPF  274 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHhhhhhhhhhhcccccc
Confidence            88888889999999988765

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.83  E-value=1.1e-18  Score=174.83  Aligned_cols=247  Identities=13%  Similarity=0.058  Sum_probs=159.2

Q ss_pred             cccCccccCCHHHHHHhhcCCCCCCCCCccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCC
Q 013079           63 EASATFTVMEPETMRRMFAGELGPDRDFFIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGG  142 (450)
Q Consensus        63 ~~att~~~~~~~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd  142 (450)
                      ..|+|.+..-.++|...+  ..|    .-.|+  ++|++.+|++.+|+++|.+.+++|+|   |+.|+.+++++++++||
T Consensus        47 l~sDs~t~am~~~~~aa~--~~G----Dd~Y~--~dpt~~~lE~~~a~l~G~e~al~~~S---Gt~An~~a~~~l~~~Gd  115 (456)
T d1c7ga_          47 LLTDSGTNAMSDKQWAGM--MIG----DEAYA--GSENFYHLEKTVKELFGFKHIVPTHQ---GRGAENLLSQLAIKPGQ  115 (456)
T ss_dssp             CSCSSSCCCEEHHHHHHT--TSC----CCCSS--SCHHHHHHHHHHHHHHCCSEEEEESS---HHHHHHHHHHHHCCTTE
T ss_pred             cccCCCcccchHHHHHHH--hcc----chhcc--CCchHHHHHHHHHHHhCCCeEEECCC---HHHHHHHHHHHhcCCCC
Confidence            455555544234443332  122    23576  58999999999999999999999999   99999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC---------------CCHHHHHHhhhc---CCceEEEEecCCCCccc
Q 013079          143 HVVAARTLYGGTHALLTHFFPRACNITTTFVDI---------------SDHEMVNSAIVQ---GRTKVLYFESISNPTLA  204 (450)
Q Consensus       143 ~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~---------------~d~~~l~~ai~~---~~t~lv~i~~~~NptG~  204 (450)
                      +|+.... +..+...+.     ..|.....+..               .|+++|+++|..   .++.++++++++|+.|.
T Consensus       116 ~Vi~~~~-f~~~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG  189 (456)
T d1c7ga_         116 YVAGNMY-FTTTRFHQE-----KNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGG  189 (456)
T ss_dssp             EEEESSC-CHHHHHHHH-----HTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTS
T ss_pred             eEecCcc-hHHHHHHHH-----HcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeeccccccc
Confidence            8887655 444433332     13444433221               289999998832   34568999999999874


Q ss_pred             c----cCHHHHHHHHHhcCCEEEEeCCC-C-CC--------CC---CccC------CCCeEEEeCCCCccccCccceEEE
Q 013079          205 V----ANIPELSRLAHDKGVTVVVDNTF-S-PL--------VL---SPAR------LGADVVVHSISKFISGGADIIAGA  261 (450)
Q Consensus       205 v----~~l~~I~~la~~~gi~livD~~~-~-~~--------~~---~~~~------~g~di~~~S~sK~~g~~g~~igG~  261 (450)
                      .    .++++|.++|++||+++|+|+++ . ..        .+   +..+      -.+|++++|++|.++.++   ||+
T Consensus       190 ~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~---GG~  266 (456)
T d1c7ga_         190 QPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI---GGF  266 (456)
T ss_dssp             BCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS---CEE
T ss_pred             ceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccc---eeE
Confidence            3    36889999999999999999996 1 10        11   1111      137999999999999764   688


Q ss_pred             EEc-CHHHHHHHHHHhhh--hhhccCCCchHHHHHHH--HccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 013079          262 VCG-PANLVNSMMDLHQG--ALMLLGPTMNPKVAFEL--SERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYP  330 (450)
Q Consensus       262 l~~-~~~~~~~l~~~~~~--~~~~~g~~~~~~~a~~~--~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p  330 (450)
                      ++. ++++.++++.....  .....+..........+  +..... ....++..++.++|.+.|++.+..+..|
T Consensus       267 i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~-~~~l~~r~~~~~~L~e~L~~~g~~vv~p  339 (456)
T d1c7ga_         267 LCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLREAGVPIVEP  339 (456)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTTCCBCSS
T ss_pred             EEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhccCCcccC
Confidence            865 45677766544321  11112222222111111  111111 2334445666788999999987755444

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.82  E-value=7.9e-19  Score=176.85  Aligned_cols=220  Identities=13%  Similarity=0.066  Sum_probs=142.0

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHH-HHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAIS-SVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~-~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ....+.++++.+|+++|++.++|+++   ||.+.+ +++.+++++||+||+++.+|.++...+. .+.. .+..+.+++.
T Consensus        64 ~~~~i~eae~~~A~~~ga~~a~f~~~---Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~-~l~~-~~~~~~~~~~  138 (462)
T d1c4ka2          64 HEGPAVAAEKHAARVYNADKTYFVLG---GSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL-AMAG-GRPVYLQTNR  138 (462)
T ss_dssp             TBTHHHHHHHHHHHHTTCSEEEEESS---HHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHT-TTTC-CEEEEECEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEECC---chHHHHHHHHHHhcCCCCeEEecccchHHHHHHHH-HHhc-CCceeeeccc
Confidence            45678999999999999999999988   876655 5577789999999999999999887653 2221 2333333222


Q ss_pred             C-------------CHHH---------HHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC-CCCC
Q 013079          176 S-------------DHEM---------VNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLV  232 (450)
Q Consensus       176 ~-------------d~~~---------l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~-~~~~  232 (450)
                      +             +.+.         +++++ ..++.++++.+.+|..|.+.|+++|+++|+++|+++++|+++ .+..
T Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~  217 (462)
T d1c4ka2         139 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAK-WKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ  217 (462)
T ss_dssp             CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHT-CSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred             ccccccCCCChHHhhHHHHHhhhhhhcHHhhh-ccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhcccc
Confidence            1             2222         23334 456777888888899999999999999999999999999998 3332


Q ss_pred             CCc--------------cCCCCeEEEeCCCCccccCccceEEEEEcCHHHH---------HHHHHHhhhhhhccCCCchH
Q 013079          233 LSP--------------ARLGADVVVHSISKFISGGADIIAGAVCGPANLV---------NSMMDLHQGALMLLGPTMNP  289 (450)
Q Consensus       233 ~~~--------------~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~---------~~l~~~~~~~~~~~g~~~~~  289 (450)
                      +.+              ...++|++++|+||.+++++.  |+++..+...+         ..+..... .....++....
T Consensus       218 ~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~--g~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~sp~~~~  294 (462)
T d1c4ka2         218 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQ--TSQIHKKDSHIKGQLRYCDHKHFNNSFN-LFMSTSPFYPM  294 (462)
T ss_dssp             SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTT--CEEEEEECGGGTTSTTCCCHHHHHHHHH-HHSCSSCCHHH
T ss_pred             ccCcCCcchhhccccccccCCccEEEEecCcccccccc--eEEEEeccccccccchhhhHHHHHHhhh-hcccCCchHHH
Confidence            211              112469999999999998763  34444333222         12222111 11122333222


Q ss_pred             HHHHHHH-c--cCCcHHHHHHHHHHHHHHHHHHHHhCCC
Q 013079          290 KVAFELS-E--RIPHLGLRMKEHCHRALIFARRMKKLGL  325 (450)
Q Consensus       290 ~~a~~~~-~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~  325 (450)
                      .++..+. .  ......+..++..++++++++++++.+.
T Consensus       295 ~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~  333 (462)
T d1c4ka2         295 YAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGS  333 (462)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            2221111 1  1122334455667788889999988754

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=8.3e-17  Score=153.46  Aligned_cols=287  Identities=11%  Similarity=0.039  Sum_probs=175.1

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCCCe-EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGTEA-AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~~~-~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      |..+.+.++..+++|+.+|+++|.+. ++||+|   ||+|++.++..++..++.+++....+...........  ..+..
T Consensus        30 ~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~s---Gt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  104 (345)
T d1v72a1          30 QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPT---GTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEF--FSNGA  104 (345)
T ss_dssp             CCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESC---HHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHH--HTTSC
T ss_pred             CccccCCCHHHHHHHHHHHHHHCCCcEEEECCc---hHHHHHHHHHHHHhcCCccccccccceeeechhhHHH--hcCcc
Confidence            33444578999999999999999975 678999   9999999999988888888888777665443321111  13444


Q ss_pred             EEEeCC-----CCHHHHHHhhhcCC------ce-EEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCCCC---
Q 013079          170 TTFVDI-----SDHEMVNSAIVQGR------TK-VLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFSPL---  231 (450)
Q Consensus       170 v~~v~~-----~d~~~l~~ai~~~~------t~-lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~~~---  231 (450)
                      +..++.     .+++.+++.+ ...      +. .+....+.|+.+...   +++++.++|+++|+++|+|+++...   
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~  183 (345)
T d1v72a1         105 KLMTVDGPAAKLDIVRLRERT-REKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALV  183 (345)
T ss_dssp             EEEECCCGGGCCCHHHHHHHT-TSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHH
T ss_pred             cccccccccccccHHHhhhhh-cccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceecc
Confidence            555443     3889999888 432      22 333445566666654   5778888999999999999997221   


Q ss_pred             --CCCc----cCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHH
Q 013079          232 --VLSP----ARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLG  303 (450)
Q Consensus       232 --~~~~----~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~  303 (450)
                        ..+.    .....+.++.+.+|...+.+   ++.+............... . ...+......++.....  ......
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~aa~~~~~~~~~~~~~  258 (345)
T d1v72a1         184 SLGCSPAEMTWKAGVDALSFGATKNGVLAA---EAIVLFNTSLATEMSYRRK-R-AGHLSSKMRFLSAQIDAYLTDDLWL  258 (345)
T ss_dssp             HHTCCTTTTTGGGTCCEEEECCGGGTCSSC---EEEEESSGGGHHHHHHHHH-H-TTCCCSSTHHHHHHHHHHTSTTHHH
T ss_pred             ccccCHHHhhccccccccccCccccccccc---cccccchhhhhhhcccccc-c-cccccchhhHHhhhhHHHHHHhhhh
Confidence              1111    11234566655555554332   2334444433333222211 1 12222222233222222  223334


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccc
Q 013079          304 LRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMA  382 (450)
Q Consensus       304 ~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~  382 (450)
                      ....+..++..++.+.|.+++. .+..|.                   .++++.+.+++.     +.+.|...+    +.
T Consensus       259 ~~~~~~~~~~~~~~~~l~~~~g~~~~~p~-------------------~~niv~~~~~~~-----~~~~L~~~g----i~  310 (345)
T d1v72a1         259 RNARKANAAAQRLAQGLEGLGGVEVLGGT-------------------EANILFCRLDSA-----MIDALLKAG----FG  310 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEESCC-------------------CSSEEEEEECHH-----HHHHHHHTT----CB
T ss_pred             hhccchhhHHHHHHHHHHhcCCcEeccCC-------------------CccEEEEEcCHH-----HHHHHHHcC----CC
Confidence            4445566777788888888765 555453                   345888888632     233343322    33


Q ss_pred             cccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          383 VSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       383 vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      ++.+                         ...++.||||++ ..++++.+|.+.++|++.
T Consensus       311 v~~~-------------------------~~~~~~lR~~~~-~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         311 FYHD-------------------------RWGPNVVRFVTS-FATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             CBCS-------------------------SSSTTEEEEECC-TTCCHHHHHHHHHHHHHT
T ss_pred             cccc-------------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHHh
Confidence            3221                         012578999999 999999999999988764

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.79  E-value=3.6e-17  Score=160.59  Aligned_cols=251  Identities=20%  Similarity=0.220  Sum_probs=182.7

Q ss_pred             CChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           97 FNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ..+.++++|+++|+++|.+.+++|+|   ||.|+.++++++ +++||+|++++.+|.++...+.     ..|.++.++|.
T Consensus        32 ~g~~v~~fE~~~a~~~g~~~~v~~~S---Gt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~-----~~g~~p~~~d~  103 (384)
T d1b9ha_          32 GGDEVNSFEREFAAHHGAAHALAVTN---GTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQ-----RLGAVTVPVDV  103 (384)
T ss_dssp             TCSHHHHHHHHHHHHTTCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHH-----HTTCEEEEECB
T ss_pred             CCHHHHHHHHHHHHHHCcCeEEEeCC---HHHHHHHHHHHcCCCCCCEEEEecccccccccccc-----ccccccccccc
Confidence            35789999999999999999999999   999999999987 7899999999999999988775     36888888885


Q ss_pred             C------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCcc---CCC-CeEEE
Q 013079          176 S------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPA---RLG-ADVVV  244 (450)
Q Consensus       176 ~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~---~~g-~di~~  244 (450)
                      +      |++.+++.+ +++|++|+   +.+..|...++++|.++|+++++++|.|++++.. .++..   .+| ..+++
T Consensus       104 ~~~~~~~d~~~~~~~i-~~~tk~i~---~~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~S  179 (384)
T d1b9ha_         104 DAATYNLDPEAVAAAV-TPRTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFS  179 (384)
T ss_dssp             CTTTCCBCHHHHHHHC-CTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEE
T ss_pred             cccccccchhhhcccc-cccccccc---cccccccccccccchhhhhhhhhhhhhhhceecccccCCEecCcccccceec
Confidence            4      899999999 89999987   4677889999999999999999999999998322 22211   222 44555


Q ss_pred             eCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhh-----------hccC--CCchHHHHHHHHccCCcHHHHHHHHH
Q 013079          245 HSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGAL-----------MLLG--PTMNPKVAFELSERIPHLGLRMKEHC  310 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~-----------~~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~  310 (450)
                      ++.+|.++...   ||+++. ++++.+.++..+.+..           ...|  .-++...|++....++.+++.+++.+
T Consensus       180 f~~~K~i~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld~~~~~R~  256 (384)
T d1b9ha_         180 FQNGKLMTAGE---GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRD  256 (384)
T ss_dssp             CCTTSSSCSSS---CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             ccccccccccc---cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcccchhhhh
Confidence            66689987543   577654 5677777766544211           0112  22556667677777888888888888


Q ss_pred             HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--CHHHHHHHHHHhhc
Q 013079          311 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--TEEKANRLMNYLQN  374 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--~~~~~~~~~~~l~~  374 (450)
                      ++++++.+.|++.+.... +..+....           .....+..|.++  ..+....|++.|..
T Consensus       257 ~~~~~y~~~L~~~~~i~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Rd~l~~~L~~  310 (384)
T d1b9ha_         257 ERWTLLSRLLGAIDGVVP-QGGDVRAD-----------RNSHYMAMFRIPGLTEERRNALVDRLVE  310 (384)
T ss_dssp             HHHHHHHHHHHTSTTCEE-CCCCTTCC-----------BCCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccccc-cccccccc-----------ccccccccceecccccccHHHHHHHHHH
Confidence            899999999988654211 11111000           012234556665  44445678888875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.78  E-value=1.4e-17  Score=166.25  Aligned_cols=287  Identities=13%  Similarity=0.082  Sum_probs=178.0

Q ss_pred             HHHHHHHHhCCCe-EEEe-cChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC----
Q 013079          104 LSRQMAALEGTEA-AYCT-ASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI----  175 (450)
Q Consensus       104 l~~~iA~l~g~~~-~~~t-sg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~----  175 (450)
                      +...+++++|.+. ..++ .|   +++++.+++.++.  .+++.|+++...|+++...+.     ..|....+++.    
T Consensus       118 ~~~~~~~~~g~~~~~~~~~~~---t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~-----~~g~~~~~v~~~~~~  189 (434)
T d2z67a1         118 ILESFFKQLGLNVHAIATPIS---TGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVS-----FVGMNMRLVETVLDG  189 (434)
T ss_dssp             HHHHHHHHTTCCCEEEEESSC---HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-----HTTCEEEEECCEEET
T ss_pred             HHHHHHHhcCCCcceeecCcH---HHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHH-----HhCCcceEEEeecCC
Confidence            3345677777654 3444 45   5566666666542  368899999999999988875     25666666542    


Q ss_pred             ----CCHHHHHHhhhc----CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-------CCccCCCC
Q 013079          176 ----SDHEMVNSAIVQ----GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-------LSPARLGA  240 (450)
Q Consensus       176 ----~d~~~l~~ai~~----~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-------~~~~~~g~  240 (450)
                          .|+++|++++.+    .++.+|++++|++++|.+.|+++|+++|+++|+++|+|++|+...       ..+...++
T Consensus       190 ~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~~  269 (434)
T d2z67a1         190 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV  269 (434)
T ss_dssp             TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred             CccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCCc
Confidence                289999999832    368889999999999999999999999999999999999984322       13456689


Q ss_pred             eEEEeCCCCccccCccceEEEE-EcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHH--ccCCcHHHHHHHHHHHHHHHH
Q 013079          241 DVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS--ERIPHLGLRMKEHCHRALIFA  317 (450)
Q Consensus       241 di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~--~~~~~l~~~~~~~~~~~~~l~  317 (450)
                      |++++|+||+++.+...  |++ +.++.+++++.....    ..........++..+  .....+....++..++++++.
T Consensus       270 D~~~~s~hK~l~~~~g~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~  343 (434)
T d2z67a1         270 DAVVSSSDKNLLTPIGG--GLVYSTDAEFIKEISLSYP----GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLD  343 (434)
T ss_dssp             SEEEEEHHHHHCCCSSC--EEEEESCHHHHHHHHTTSC----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCccccccCCCc--cccccCcHHHHHHHHhhcc----cccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            99999999987755432  444 566777776654332    122222222222222  233344555566677777887


Q ss_pred             HHHHhC----CCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccccc
Q 013079          318 RRMKKL----GLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETLMS  393 (450)
Q Consensus       318 ~~L~~~----~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~  393 (450)
                      +.|+++    +.++..+.                   ....+.+.+...  ..++...|...      +++ |..+....
T Consensus       344 ~~L~~l~~~~g~~ll~~~-------------------~~~~~~~~~~~~--~~~l~~~L~~~------gI~-g~~v~~~l  395 (434)
T d2z67a1         344 ELLNDLSKKTGGKFLDVE-------------------SPIASCISVNSD--PVEIAAKLYNL------RVT-GPRGIKKT  395 (434)
T ss_dssp             HHHHHHHHHSSCCBCCCC-------------------CSSEEEEECSSC--HHHHHHHHHHT------TEE-SCEEECTT
T ss_pred             HHHHHhhhhcCceecCCC-------------------CCceeeeecCCC--HHHHHHHHHHc------CCe-eeehhhhc
Confidence            777764    32322111                   112444555421  33444445431      221 11110000


Q ss_pred             ccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          394 CSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                      .+....+.         .-...+.+|++++ ..+++++|+.|.++|+++
T Consensus       396 ~~~g~~~~---------~~~~~~~l~~~~s-~~~T~edID~~i~~L~kI  434 (434)
T d2z67a1         396 DHFGNCYL---------GTYTHDYIVMNAA-IGVRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             CHHHHTCS---------SCCSCCEEEEECC-TTCCHHHHHHHHHHHHTC
T ss_pred             cccCeeee---------cccCCCeEEEecC-CCCCHHHHHHHHHHHhcC
Confidence            00000000         0113578999999 999999999999999864

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=1.2e-17  Score=161.65  Aligned_cols=256  Identities=15%  Similarity=0.114  Sum_probs=165.7

Q ss_pred             CCChhHHHHHHHHHHHhCCCe--EEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEe
Q 013079           96 HFNPTVLNLSRQMAALEGTEA--AYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFV  173 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~~~--~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v  173 (450)
                      ......+++++.|+++++.+.  +++++|   ||+++++++..++.+|++|++...++.+....  ....+ .+..+..+
T Consensus        30 ~f~~i~~~~~~~l~~ll~~~~~~i~~~gs---gT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~--~~a~~-~~~~~~~~  103 (348)
T d1iuga_          30 AAREVFLKARGLLREAFRTEGEVLILTGS---GTLAMEALVKNLFAPGERVLVPVYGKFSERFY--EIALE-AGLVVERL  103 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEESC---HHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH--HHHHH-TTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCEEEEeCc---hHHHHHHHHHhcccccccceeecchHHHHHHH--HHHHh-cCcccccc
Confidence            344678899999999998753  588999   99999999999999999999888776554322  22223 55555555


Q ss_pred             CCC--CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhc--CCEEEEeCCC--CCCCCCccCCCCeEEEeCC
Q 013079          174 DIS--DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDK--GVTVVVDNTF--SPLVLSPARLGADVVVHSI  247 (450)
Q Consensus       174 ~~~--d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~--gi~livD~~~--~~~~~~~~~~g~di~~~S~  247 (450)
                      +.+  +...++... ..+++.|++.+..+.||.+.|+++|.++|+++  +.++++|.++  +...++....++|+++.|.
T Consensus       104 ~~~~g~~~~~~~~~-~~~~~~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~s  182 (348)
T d1iuga_         104 DYPYGDTPRPEDVA-KEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGS  182 (348)
T ss_dssp             ECCTTCCCCTTTSC-CSSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEES
T ss_pred             cccCCCcccccccc-ccCCCeeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccccCCEEEecc
Confidence            432  111122222 56889999999999999999999999999987  4789999987  5556777778999999999


Q ss_pred             CCcc-ccCccceEEEEEcCHHHHHHHH-------------HHhhhhhhccCCCchHHHHH---HHHcc-CCcHHHHHHHH
Q 013079          248 SKFI-SGGADIIAGAVCGPANLVNSMM-------------DLHQGALMLLGPTMNPKVAF---ELSER-IPHLGLRMKEH  309 (450)
Q Consensus       248 sK~~-g~~g~~igG~l~~~~~~~~~l~-------------~~~~~~~~~~g~~~~~~~a~---~~~~~-~~~l~~~~~~~  309 (450)
                      +|++ |++|  + |+++.+++.++++.             ....+   ....+++....+   .+++. .+...++.+++
T Consensus       183 qK~l~gppG--~-~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~---~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~  256 (348)
T d1iuga_         183 QKGLMCPPG--L-GFVALSPRALERLKPRGYYLDLARELKAQKEG---ESAWTPAINLVLAVAAVLEEVLPRLEEHLALK  256 (348)
T ss_dssp             SSTTCCCSC--E-EEEEECHHHHHTCCCCSSTTCHHHHHHHHTTT---CCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred             ccceecCCc--e-eeeeechHHHhhhcccccccchhhhhhhhccC---cccccccchHHHHHHHHHHHHHHHHhHHHHHH
Confidence            9999 7777  5 88888877665431             11111   112233322222   22221 22333343333


Q ss_pred             HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccc
Q 013079          310 CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLG  386 (450)
Q Consensus       310 ~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G  386 (450)
                      ...+..+...+++.+.... |.. .                ...+++|.+|...+...+.+.|...   | +.++.|
T Consensus       257 ~~~~~~~~~~~~~~gl~~~-~~~-~----------------s~~v~~~~~P~g~~~~~~~~~l~~~---g-i~i~~G  311 (348)
T d1iuga_         257 AWQNALLYGVGEEGGLRPV-PKR-F----------------SPAVAAFYLPEGVPYARVKEAFAQR---G-AVIAGG  311 (348)
T ss_dssp             HHHHHHHHHHHHHTTCEES-CSS-B----------------CTTCEEEECCTTCCHHHHHHHHHTT---T-EECEEC
T ss_pred             HHHHHHHhhhhhhhhhccC-hhh-c----------------CCeEEEEECCCCCCHHHHHHHHHHC---C-eEEEcC
Confidence            4444455555556666532 321 1                1237899998432356777777653   3 555555

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.2e-17  Score=163.82  Aligned_cols=294  Identities=13%  Similarity=0.015  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHhCCCe-------EEEecChHHHHHHHHHHHHHhcc-----------C-CCEEEEeCCCchhHHHHHHHhC
Q 013079          102 LNLSRQMAALEGTEA-------AYCTASDKAGMSAISSVLMQLCS-----------S-GGHVVAARTLYGGTHALLTHFF  162 (450)
Q Consensus       102 ~~l~~~iA~l~g~~~-------~~~tsg~~~gt~ai~~al~~l~~-----------~-gd~Vi~~~~~y~~~~~~~~~~~  162 (450)
                      .++.+.||+++|...       -++|+|   ||+|+.+++.+...           . ...++++...|.++...+.   
T Consensus        96 ~~~v~~la~L~~~p~~~~~~~~G~~t~G---gSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~---  169 (450)
T d1pmma_          96 LRCVNMVADLWHAPAPKNGQAVGTNTIG---SSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFAR---  169 (450)
T ss_dssp             HHHHHHHHHHTTCCCCTTSCCSEEEESS---HHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHH---
T ss_pred             HHHHHHHHHHhCCCccccCCCcCeeeCc---hHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHH---
Confidence            344557888888521       499999   99999998876421           1 2357778888888887775   


Q ss_pred             CCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHH------HhcCCEEEEeCCCCC
Q 013079          163 PRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLA------HDKGVTVVVDNTFSP  230 (450)
Q Consensus       163 ~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la------~~~gi~livD~~~~~  230 (450)
                        .+|++++.++.+      |+++|++++ +++|.+|++...++.||.+.|+++|.++|      +++|+++|||++|++
T Consensus       170 --~~gi~~~~v~~~~~~~~~d~~~L~~~i-~~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG  246 (450)
T d1pmma_         170 --YWDVELREIPMRPGQLFMDPKRMIEAC-DENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG  246 (450)
T ss_dssp             --HTTCEEEECCCBTTBCSCCHHHHHHHC-CTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGG
T ss_pred             --HcCCCceEeeecCCCCcCcHHHHHHHh-hhCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhcc
Confidence              478888888754      899999999 88999999999999999999999888775      558999999999844


Q ss_pred             CC--CCcc-------CCCCeEEEeCCCCccccCccceEEEEEc-CHHHHHHHHHHhh----h---hhhccCCCc--hHHH
Q 013079          231 LV--LSPA-------RLGADVVVHSISKFISGGADIIAGAVCG-PANLVNSMMDLHQ----G---ALMLLGPTM--NPKV  291 (450)
Q Consensus       231 ~~--~~~~-------~~g~di~~~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~----~---~~~~~g~~~--~~~~  291 (450)
                      +.  +...       -.++|.++.|.||++++|-. + |+++. ++...........    +   .....+...  ....
T Consensus       247 ~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g-~-g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~  324 (450)
T d1pmma_         247 FLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLG-C-GWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIA  324 (450)
T ss_dssp             GTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS-C-EEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHH
T ss_pred             ceeeeechhhhhhhcccceeEeecChhhccCCCCC-e-eEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHH
Confidence            32  1111       12699999999998775432 4 66654 4443322111100    0   001112222  1222


Q ss_pred             HHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH----HH
Q 013079          292 AFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE----EK  364 (450)
Q Consensus       292 a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~----~~  364 (450)
                      .+..++  +.+.+.+..++..++++++.+.|++.+. ++..|+-+.               ..-++++|.+.+.    -.
T Consensus       325 ~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~---------------~~l~~V~Fr~~~~~~~~~~  389 (450)
T d1pmma_         325 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPD---------------EGIPAVCFKLKDGEDPGYT  389 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTT---------------TBSSEEEEEECTTCCCSSC
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCC---------------CceEEEEEecCCcccCCCC
Confidence            333222  3445677778889999999999999875 665544211               1234799998621    12


Q ss_pred             HHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHH----HHHHHHHHHHH
Q 013079          365 ANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLD----QRWSQFEKALS  440 (450)
Q Consensus       365 ~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~----~~i~~l~~al~  440 (450)
                      ...+.+.|..   .|. .++..      ..|+.              ......+|+++. ...+.    +++++|.++++
T Consensus       390 ~~~l~~~L~~---~Gw-~v~~~------~~p~~--------------~~~~~~lRvvv~-~~~t~e~~d~lv~dl~~~v~  444 (450)
T d1pmma_         390 LYDLSERLRL---RGW-QVPAF------TLGGE--------------ATDIVVMRIMCR-RGFEMDFAELLLEDYKASLK  444 (450)
T ss_dssp             HHHHHHHHHT---TTC-BCCEE------ECCTT--------------CTTCEEEEEECC-TTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---cCC-eeecc------CcCCC--------------cCCcEEEEEEcc-CCCCHHHHHHHHHHHHHHHH
Confidence            3456666664   332 22210      01111              111356999999 75544    44566666666


Q ss_pred             HhhhcC
Q 013079          441 RMQDSG  446 (450)
Q Consensus       441 ~~~~~~  446 (450)
                      .+++.|
T Consensus       445 ~l~~~p  450 (450)
T d1pmma_         445 YLSDHP  450 (450)
T ss_dssp             HHHHCC
T ss_pred             HHHhCc
Confidence            666543

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1e-17  Score=167.66  Aligned_cols=206  Identities=12%  Similarity=0.106  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhCCC---eEEEecChHHHHHHHHH-HHHHh---ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079          103 NLSRQMAALEGTE---AAYCTASDKAGMSAISS-VLMQL---CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus       103 ~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~-al~~l---~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      ++.+.+++++|.+   ..++|++   |+++... ++.++   ...+++||++...|.++...+.     ..|.+..+|+.
T Consensus        98 ~~~~~~~~l~g~~~~~~~~~~~~---~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~-----~~g~~~~~v~~  169 (445)
T d3bc8a1          98 SLVLNVIKLAGVHSVASCFVVPM---ATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMV-----TAGFEPVVIEN  169 (445)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEESS---CHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHH-----HTTCEEEEECC
T ss_pred             HHHHHHHHHhCCCcccCcccccc---chHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHH-----HcCCeeEEEEe
Confidence            3445677777753   4688888   7765544 34433   2456899999999999988875     36777766652


Q ss_pred             --------CCHHHHHHhhhc---CCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCCC-C--Cc----cC
Q 013079          176 --------SDHEMVNSAIVQ---GRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPLV-L--SP----AR  237 (450)
Q Consensus       176 --------~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~~-~--~~----~~  237 (450)
                              .|+++|++++.+   +++.+|++++++|++|.+.|+++|+++|+++|+++|+|++++... +  ..    ..
T Consensus       170 ~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~  249 (445)
T d3bc8a1         170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGAR  249 (445)
T ss_dssp             EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHH
T ss_pred             eccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccC
Confidence                    189999998832   368899999999999999999999999999999999999984321 1  01    11


Q ss_pred             C-CCeEEEeCCCCccccCccceEEEE-EcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHH
Q 013079          238 L-GADVVVHSISKFISGGADIIAGAV-CGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRA  313 (450)
Q Consensus       238 ~-g~di~~~S~sK~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~  313 (450)
                      + ++|+++.|.||+++.+..  +|++ +.+..+.+.+.....    ..+.......++..+.  +........++...++
T Consensus       250 ~~~vd~~~~s~hK~~~~p~g--~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  323 (445)
T d3bc8a1         250 VGRIDAFVQSLDKNFMVPVG--GAIIAGFNEPFIQDISKMYP----GRASASPSLDVLITLLSLGCSGYRKLLKERKEMF  323 (445)
T ss_dssp             HSCCCEEEEEHHHHHSCCSS--CEEEEESCHHHHHHHHHHSC----SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcceEEecCccccccCCC--CceeeeCChHHHHHHHHHHh----hcccCcchHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence            2 589999999997765543  2555 556666666654433    2222222223333222  2222334444455566


Q ss_pred             HHHHHHHHh
Q 013079          314 LIFARRMKK  322 (450)
Q Consensus       314 ~~l~~~L~~  322 (450)
                      +++.+.|++
T Consensus       324 ~~~~~~L~~  332 (445)
T d3bc8a1         324 VYLSTQLKK  332 (445)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666654

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.74  E-value=1.6e-16  Score=149.97  Aligned_cols=289  Identities=13%  Similarity=0.031  Sum_probs=170.4

Q ss_pred             cCCCChhHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEE
Q 013079           94 SRHFNPTVLNLSRQMAALEGTE--AAYCTASDKAGMSAISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTT  171 (450)
Q Consensus        94 ~r~~~~~~~~l~~~iA~l~g~~--~~~~tsg~~~gt~ai~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~  171 (450)
                      ++...+..+++|++||+++|++  .++||+|   ||+|+++++..+..+++.++...+.|.+..........  ......
T Consensus        30 ~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsg---gtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  104 (340)
T d1svva_          30 GYGQDSHCAKAARLIGELLERPDADVHFISG---GTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEAT--GHKVVT  104 (340)
T ss_dssp             STTCSHHHHHHHHHHHHHHTCTTSEEEEESC---HHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT--TCCEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcceEEEcCC---HHHHHHHHHHHHhhhccccccccccceeeeeccccccc--ceeeee
Confidence            3346788999999999999975  6899999   99999999999999999999988888766433221111  122222


Q ss_pred             EeCC---CCHHHHHHhhhc-----CCceEEEEecCCCCccccc---CHHHHHHHHHhcCCEEEEeCCCC--CCCCCccC-
Q 013079          172 FVDI---SDHEMVNSAIVQ-----GRTKVLYFESISNPTLAVA---NIPELSRLAHDKGVTVVVDNTFS--PLVLSPAR-  237 (450)
Q Consensus       172 ~v~~---~d~~~l~~ai~~-----~~t~lv~i~~~~NptG~v~---~l~~I~~la~~~gi~livD~~~~--~~~~~~~~-  237 (450)
                      ..+.   .+.+...++...     ..+..+++...+|+.|.+.   ++..+.++|+++|+++++|+++.  .+...... 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~  184 (340)
T d1svva_         105 APCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL  184 (340)
T ss_dssp             ECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC
T ss_pred             cccccccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccc
Confidence            2211   123322222211     1233444545555556654   46677899999999999999972  11111111 


Q ss_pred             ------CCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079          238 ------LGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       238 ------~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                            ...++...+..|..+..+   +++.............................++..............++...
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~  261 (340)
T d1svva_         185 TLADIARLTDMFYIGATKAGGMFG---EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNK  261 (340)
T ss_dssp             CHHHHHHHCSEEEEECTTTTCSSC---EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred             ccccccccceeeecCCcccccccc---ccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                  134566666777666554   25555544433333222211100111111222222222233334455566778


Q ss_pred             HHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhcccccccccccccccccc
Q 013079          312 RALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYETL  391 (450)
Q Consensus       312 ~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~  391 (450)
                      ++.++.+.|++.+..+..|.                   .++++.+.+++. .+.++.+.+...   + +.++       
T Consensus       262 ~~~~~~~~l~~~g~~~~~p~-------------------~~~~v~~~~~~~-~~~~l~~~~~~~---~-~~~~-------  310 (340)
T d1svva_         262 MAAILKAGLEACGIRLAWPS-------------------ASNQLFPILENT-MIAELNNDFDMY---T-VEPL-------  310 (340)
T ss_dssp             HHHHHHHHHHHTTCCBSSCC-------------------SSSEECBEEEHH-HHHHHTTTEECE---E-EEEE-------
T ss_pred             HHhhhHHHHhcCCCeeecCC-------------------CceEEEEeCCHH-HHHHHHHhhhhh---c-cccc-------
Confidence            88889999999888766554                   245777777643 345554443321   0 0000       


Q ss_pred             ccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          392 MSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                                          ...++.||||++ ..++++.|+++.++|+++
T Consensus       311 --------------------~~~~~~vR~s~~-~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         311 --------------------KDGTCIMRLCTS-WATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             --------------------TTTEEEEEEECC-TTCCHHHHHHHHHHHHHC
T ss_pred             --------------------CCCCcEEEEECC-CCCCHHHHHHHHHHHhcC
Confidence                                011478999999 999999999999998864

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3.7e-17  Score=164.74  Aligned_cols=225  Identities=13%  Similarity=0.054  Sum_probs=147.4

Q ss_pred             ccccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCCE---------EEEeCCCchhHHHHHHHh
Q 013079           91 FIYSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGGH---------VVAARTLYGGTHALLTHF  161 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd~---------Vi~~~~~y~~~~~~~~~~  161 (450)
                      ..|+  .+|++.+|++++++++|.+.+++++|   |++|+.+++..++++|+.         ++.+...|..+...+.  
T Consensus        68 ~~Y~--~~~~~~~le~~~a~l~G~~~~~~~~s---Gt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--  140 (467)
T d2v1pa1          68 EAFS--GSRSYYALAESVKNIFGYQYTIPTHQ---GRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ--  140 (467)
T ss_dssp             CCSS--SCHHHHHHHHHHHHHTCCSEEEEECS---STTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHH--
T ss_pred             hhhc--CCchHHHHHHHHHHHHCCCEEEECCC---CHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHH--
Confidence            4576  58999999999999999999999999   999999999988765432         4444444444444332  


Q ss_pred             CCCccCeeEEEeCCC---------------CHHHHHHhhhc---CCceEEEEecCCCCcccc-c---CHHHHHHHHHhcC
Q 013079          162 FPRACNITTTFVDIS---------------DHEMVNSAIVQ---GRTKVLYFESISNPTLAV-A---NIPELSRLAHDKG  219 (450)
Q Consensus       162 ~~~~~g~~v~~v~~~---------------d~~~l~~ai~~---~~t~lv~i~~~~NptG~v-~---~l~~I~~la~~~g  219 (450)
                         ..|..+.+++.+               |+++|++.+..   +.+++++++..+|..|.. .   ++++|.++|++||
T Consensus       141 ---~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g  217 (467)
T d2v1pa1         141 ---INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYD  217 (467)
T ss_dssp             ---HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTT
T ss_pred             ---HcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcC
Confidence               256676665432               78899988832   357889999998877644 2   5889999999999


Q ss_pred             CEEEEeCCC-CCC------------CCCccC------CCCeEEEeCCCCccccCccceEEEEEcCHHH-HHHHHHHhhhh
Q 013079          220 VTVVVDNTF-SPL------------VLSPAR------LGADVVVHSISKFISGGADIIAGAVCGPANL-VNSMMDLHQGA  279 (450)
Q Consensus       220 i~livD~~~-~~~------------~~~~~~------~g~di~~~S~sK~~g~~g~~igG~l~~~~~~-~~~l~~~~~~~  279 (450)
                      ++||+|+++ ...            ..++..      ..+|+++.|.+|.++++.   ||+++.+++. .......+...
T Consensus       218 ~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~---gg~i~~~~~~~~~~~~~~~~~~  294 (467)
T d2v1pa1         218 IPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM---GGLLCMKDDSFFDVYTECRTLC  294 (467)
T ss_dssp             CCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS---CEEEEECSGGGHHHHHHHHHHH
T ss_pred             CEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC---ceeEEecchhhhhHHHhhcccc
Confidence            999999996 110            011111      137999999999998764   5888766543 33332222211


Q ss_pred             ------hhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeee
Q 013079          280 ------LMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVL  328 (450)
Q Consensus       280 ------~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~  328 (450)
                            ....+.......+...........+..++..++.++|.+.|++.+..+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~  349 (467)
T d2v1pa1         295 VVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ  349 (467)
T ss_dssp             HHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             cccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence                  1111222222222222222222345556667788899999998776443

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-16  Score=156.40  Aligned_cols=250  Identities=16%  Similarity=0.140  Sum_probs=166.3

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhcc----------CCCEEEEeCCCchhHHHH-HH-------
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCS----------SGGHVVAARTLYGGTHAL-LT-------  159 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~----------~gd~Vi~~~~~y~~~~~~-~~-------  159 (450)
                      ++....+.+.++++.+.+.++|++|   |++|+..+++....          ....|+...-.|++.... +.       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~s---GseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~  158 (404)
T d2byla1          82 NNVLGEYEEYITKLFNYHKVLPMNT---GVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTS  158 (404)
T ss_dssp             ESSHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHH
T ss_pred             cchHHHHHHhhhhcccccccccccC---ccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCccc
Confidence            4567788899999999999999999   99999999976421          124677777777653222 11       


Q ss_pred             --HhCCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC
Q 013079          160 --HFFPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL  233 (450)
Q Consensus       160 --~~~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~  233 (450)
                        .+.+  ....+..++..|++++++++..+++.+|++|.+....|.+.+    +++|.++|+++|+++|+||+++++..
T Consensus       159 ~~~~~p--~~~~~~~~p~~d~~~l~~~l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR  236 (404)
T d2byla1         159 YDGFGP--FMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLAR  236 (404)
T ss_dssp             HTTSCS--CCTTEEEECTTCHHHHHHHHTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred             ccCCCC--CCCCeeEecccCHHHHHHhcCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccc
Confidence              1112  123456778889999999996667889999999988898765    99999999999999999999966632


Q ss_pred             -------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHH
Q 013079          234 -------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRM  306 (450)
Q Consensus       234 -------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~  306 (450)
                             ....+.+|+++  ++|.+++...++ |.++.++++.+.+..... ..+..|+.++..++...+..++. ....
T Consensus       237 ~G~~~a~~~~gv~PDi~~--~gK~l~gG~~p~-~av~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~L~~i~~-~~l~  311 (404)
T d2byla1         237 TGRWLAVDYENVRPDIVL--LGKALSGGLYPV-SAVLCDDDIMLTIKPGEH-FSTYGGNPLGCRVAIAALEVLEE-ENLA  311 (404)
T ss_dssp             TSSSSGGGGGTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHTTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-TTHH
T ss_pred             ccccchhhhcCCCCCEEE--ECchhhCCCccc-eeeeechhhhhccCCCCC-CcCCCcCHHHHHHHHHHHHHHHh-cCch
Confidence                   11223469886  999999655777 888888888766543322 22334444444444443332221 1123


Q ss_pred             HHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCC--HHHHHHHHHHhhc
Q 013079          307 KEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMET--EEKANRLMNYLQN  374 (450)
Q Consensus       307 ~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~--~~~~~~~~~~l~~  374 (450)
                      ++..+...++.+.|+++.....                 .+.+|.|.+..|++..  ...+..+..++..
T Consensus       312 ~~~~~~g~~l~~~l~~l~~~~i-----------------~~vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~  364 (404)
T d2byla1         312 ENADKLGIILRNELMKLPSDVV-----------------TAVRGKGLLNAIVIKETKDWDAWKVCLRLRD  364 (404)
T ss_dssp             HHHHHHHHHHHHHHHTSCTTTE-----------------EEEEEETTEEEEEECCCSSCCHHHHHHHHHH
T ss_pred             hhhhHhhHHHHHHHHhhccccc-----------------eeeeecccEEEEEEecCCchhHHHHHHHHHh
Confidence            3445556677777876532110                 0223688899999862  2234556666654

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.72  E-value=2.8e-16  Score=153.54  Aligned_cols=211  Identities=13%  Similarity=0.102  Sum_probs=160.6

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS  176 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~  176 (450)
                      .|.++++|+.+++++|.+.+++++|   ||.|+.++++++ +++||+|++++.+|.++...+.     ..|.+++++|.+
T Consensus        20 G~~~~~fE~~~~~~~~~~~~~~~~S---gT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~-----~~g~~pv~~Di~   91 (374)
T d1o69a_          20 GEFVNRFEQSVKDYSKSENALALNS---ATAALHLALRVAGVKQDDIVLASSFTFIASVAPIC-----YLKAKPVFIDCD   91 (374)
T ss_dssp             THHHHHHHHHHHHHHCCSEEEEESC---HHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHH-----HTTCEEEEECBC
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEeCC---HHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHh-----hccceeEecccc
Confidence            5889999999999999999999999   999999999988 7889999999999999887775     368899999875


Q ss_pred             ------CHH--HHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCCC-CCCccCCC--CeEEEe
Q 013079          177 ------DHE--MVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSPL-VLSPARLG--ADVVVH  245 (450)
Q Consensus       177 ------d~~--~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~~-~~~~~~~g--~di~~~  245 (450)
                            +.+  ++...+ ..+|++|++.   +..|...++++|.++|+++|++||.|++++.. .+.....|  .|+.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~~aii~~---~~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~gd~~~f  167 (374)
T d1o69a_          92 ETYNIDVDLLKLAIKEC-EKKPKALILT---HLYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVY  167 (374)
T ss_dssp             TTSSBCHHHHHHHHHHC-SSCCCEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEE
T ss_pred             cccccccccccccchhc-cccccccccc---ccccchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCCCceEEE
Confidence                  122  233444 6788888864   45789999999999999999999999998322 22222222  477777


Q ss_pred             CCC--CccccCccceEEEE-EcCHHHHHHHHHHhhhhhh--------ccC--CCchHHHHHHHHccCCcHHHHHHHHHHH
Q 013079          246 SIS--KFISGGADIIAGAV-CGPANLVNSMMDLHQGALM--------LLG--PTMNPKVAFELSERIPHLGLRMKEHCHR  312 (450)
Q Consensus       246 S~s--K~~g~~g~~igG~l-~~~~~~~~~l~~~~~~~~~--------~~g--~~~~~~~a~~~~~~~~~l~~~~~~~~~~  312 (450)
                      |++  |.++..+   ||++ ..++++++.++.++.....        ..|  .-++...|+.....++.+....++.++.
T Consensus       168 Sf~~~K~l~tge---GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~~~i~~r~~i  244 (374)
T d1o69a_         168 SYNGNKIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREI  244 (374)
T ss_dssp             ECCTTSSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             eccCcccccccc---ceeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhhhhcchhHHH
Confidence            775  9998655   4655 5567888888766542110        112  2356667777777788888888888888


Q ss_pred             HHHHHHHHHhC
Q 013079          313 ALIFARRMKKL  323 (450)
Q Consensus       313 ~~~l~~~L~~~  323 (450)
                      ++.+.+.|.+.
T Consensus       245 ~~~y~~~L~~~  255 (374)
T d1o69a_         245 YEWYKEFLGEY  255 (374)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHhhcccc
Confidence            88888888764

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.72  E-value=6.6e-16  Score=150.71  Aligned_cols=213  Identities=16%  Similarity=0.165  Sum_probs=162.9

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHh-ccCC--CEEEEeCCCchhHHHHHHHhCCCccCeeEEEeC
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQL-CSSG--GHVVAARTLYGGTHALLTHFFPRACNITTTFVD  174 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l-~~~g--d~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~  174 (450)
                      .+.++++|+++|+++|.+.+++|+|   ||.|+.++++++ ..+|  ++|+++..+|.++...+.     ..|.+++++|
T Consensus        30 G~~v~~fE~~~~~~~g~k~ai~~~S---gt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~-----~~G~~pv~vD  101 (371)
T d2fnua1          30 GKRSLLFEEALCEFLGVKHALVFNS---ATSALLTLYRNFSEFSADRNEIITTPISFVATANMLL-----ESGYTPVFAG  101 (371)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEESC---HHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHH-----HTTCEEEECC
T ss_pred             CHHHHHHHHHHHHHHCcCeEEEEec---HHHHHHHHHHHhcccCCCCCeeecccccccccceeee-----ccCccccccc
Confidence            4789999999999999999999999   999999999987 3444  489999999999888775     3799999998


Q ss_pred             CC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCCCC-CCCCccCC--CCeEEE--
Q 013079          175 IS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP-LVLSPARL--GADVVV--  244 (450)
Q Consensus       175 ~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~~~-~~~~~~~~--g~di~~--  244 (450)
                      .+     +.+++++.+ +++|++|++.   +..|...++++|.++|+++|+++|.|++++. ..+.....  --|+.+  
T Consensus       102 i~~~~~~~~~~~~~~~-~~~t~avi~v---h~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~S  177 (371)
T d2fnua1         102 IKNDGNIDELALEKLI-NERTKAIVSV---DYAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFS  177 (371)
T ss_dssp             BCTTSSBCGGGSGGGC-CTTEEEEEEE---CGGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEE
T ss_pred             ccccccccchhhhhhc-cchhhccccc---cccccccccccccccccccchhhccchhhccCceeccccCCccccccccc
Confidence            76     556777777 8899998865   4579999999999999999999999999832 22222111  124444  


Q ss_pred             eCCCCccccCccceEEEEEc-CHHHHHHHHHHhhhhhh----------c--cCCCchHHHHHHHHccCCcHHHHHHHHHH
Q 013079          245 HSISKFISGGADIIAGAVCG-PANLVNSMMDLHQGALM----------L--LGPTMNPKVAFELSERIPHLGLRMKEHCH  311 (450)
Q Consensus       245 ~S~sK~~g~~g~~igG~l~~-~~~~~~~l~~~~~~~~~----------~--~g~~~~~~~a~~~~~~~~~l~~~~~~~~~  311 (450)
                      +..+|.+...+   ||+++. ++++.+.++..+.....          .  ...-++...|+.++..++.+++..++.++
T Consensus       178 f~~~K~l~~g~---GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~~~~~~R~~  254 (371)
T d2fnua1         178 FHAIKPITTAE---GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREE  254 (371)
T ss_dssp             CCTTSSSCCSS---CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             ccccccccccc---ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhccchhhhhhh
Confidence            44589998655   577755 56788888776552210          1  11235666677777788888888888888


Q ss_pred             HHHHHHHHHHhCCC
Q 013079          312 RALIFARRMKKLGL  325 (450)
Q Consensus       312 ~~~~l~~~L~~~~~  325 (450)
                      ++..+.+.|.+.+.
T Consensus       255 ~~~~y~~~l~~~~~  268 (371)
T d2fnua1         255 AALTYDRIFKDNPY  268 (371)
T ss_dssp             HHHHHHHHHTTCSS
T ss_pred             hhhhhccccccccc
Confidence            88888899987765

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.72  E-value=7.6e-16  Score=154.59  Aligned_cols=286  Identities=10%  Similarity=0.071  Sum_probs=182.9

Q ss_pred             HHHHHHHHHhCCC-----------eEEEecChHHHHHHHHHHHHHhcc----------CC---------CEEEEeCCCch
Q 013079          103 NLSRQMAALEGTE-----------AAYCTASDKAGMSAISSVLMQLCS----------SG---------GHVVAARTLYG  152 (450)
Q Consensus       103 ~l~~~iA~l~g~~-----------~~~~tsg~~~gt~ai~~al~~l~~----------~g---------d~Vi~~~~~y~  152 (450)
                      ++-+.+++++|.+           ..++|+|   |++|+..++.+...          .|         -.|++++..|.
T Consensus       117 ~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~G---gs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~  193 (476)
T d1js3a_         117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGS---ASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS  193 (476)
T ss_dssp             HHHHHHHHHTTCCGGGCCTTTCSCEEEEESC---HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred             HHHHHHHHHhCCCcccccCCCCCCCceECCc---HHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccH
Confidence            3445677777753           2489999   99999998865321          11         14778999999


Q ss_pred             hHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcC-----CceEEEEecCCCCcccccCHHHHHHHHHhcCCEE
Q 013079          153 GTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQG-----RTKVLYFESISNPTLAVANIPELSRLAHDKGVTV  222 (450)
Q Consensus       153 ~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~-----~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~l  222 (450)
                      ++...+.     +.|+.+..++.+     |+++|+++|++.     .+-+|+.+..++.+|.+.|+++|+++|+++|+++
T Consensus       194 Si~ka~~-----~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wl  268 (476)
T d1js3a_         194 SVERAGL-----IGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWL  268 (476)
T ss_dssp             HHHHHHH-----HHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHHH-----hcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEE
Confidence            9988875     357777777765     899999998321     2346777888999999999999999999999999


Q ss_pred             EEeCCCCCCCC-Cc--cC----C-CCeEEEeCCCCccccCccceEEEEEcCHHHHHHH--------HHHhhh--------
Q 013079          223 VVDNTFSPLVL-SP--AR----L-GADVVVHSISKFISGGADIIAGAVCGPANLVNSM--------MDLHQG--------  278 (450)
Q Consensus       223 ivD~~~~~~~~-~~--~~----~-g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l--------~~~~~~--------  278 (450)
                      |||++|+++.. .+  ..    + .+|.++.++||+++.|... |.+++.++......        .....+        
T Consensus       269 HVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~-g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (476)
T d1js3a_         269 HVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDC-SAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYR  347 (476)
T ss_dssp             EEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESCHHHHHGGGC------------CCSCCCGG
T ss_pred             EEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcc-eeecccchHHHHHHHhcChhhhcccccccccccccc
Confidence            99999955432 11  11    1 5899999999999988753 24445554433211        100000        


Q ss_pred             -hhhccCCCchHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcE
Q 013079          279 -ALMLLGPTMNPKVAFELSE--RIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGL  354 (450)
Q Consensus       279 -~~~~~g~~~~~~~a~~~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~  354 (450)
                       .....+-.......+..++  +.+.+.+.+++..++++++.+.|++.+. ++..|.                   .-++
T Consensus       348 ~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p-------------------~l~i  408 (476)
T d1js3a_         348 HWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-------------------TLGL  408 (476)
T ss_dssp             GSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-------------------CSSE
T ss_pred             ccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC-------------------ceEE
Confidence             0001111122333444333  4455777888888999999999999865 555442                   1238


Q ss_pred             EEEEeCC-HHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHH
Q 013079          355 LCLDMET-EEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWS  433 (450)
Q Consensus       355 ~~~~l~~-~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~  433 (450)
                      ++|.+.+ ....+++++++...+   .+.++          +...            .  ..-.||++++-..++++.++
T Consensus       409 V~Fr~~~~d~~n~~l~~~l~~~G---~~~~s----------~t~~------------~--g~~~lR~~i~n~~Tt~~did  461 (476)
T d1js3a_         409 VCFRLKGSDGLNEALLERINSAR---KIHLV----------PCRL------------R--GQFVLRFAICSRKVESGHVR  461 (476)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHT---SCBCE----------EEEE------------T--TEEEEEEECCCTTCCHHHHH
T ss_pred             EEEEccCChHHHHHHHHHHHhcC---CEEEe----------eeeE------------C--CEEEEEEEeCCCCCCHHHHH
Confidence            9999873 333456777665421   11111          0000            0  12369999982345666677


Q ss_pred             HHHHHHHHhh
Q 013079          434 QFEKALSRMQ  443 (450)
Q Consensus       434 ~l~~al~~~~  443 (450)
                      .+.+.|+++.
T Consensus       462 ~~~~~i~~~a  471 (476)
T d1js3a_         462 LAWEHIRGLA  471 (476)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776654

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.70  E-value=1e-15  Score=146.83  Aligned_cols=283  Identities=17%  Similarity=0.188  Sum_probs=187.4

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCCCCCCCccccC--CCChhHHHHH----HHHHHHhCCCeE-EEecChHHHHHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSR--HFNPTVLNLS----RQMAALEGTEAA-YCTASDKAGMSAISS  132 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r--~~~~~~~~l~----~~iA~l~g~~~~-~~tsg~~~gt~ai~~  132 (450)
                      ++.+|.+++.+.+ +.+-..|...|.   .+|.--|  .+...+++++    ++..++++++.+ +=.-|   |+.|+.+
T Consensus        27 ~LiaSEN~~S~~v~~a~~S~l~nkya---eG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~S---Gs~An~a  100 (405)
T d1kl1a_          27 ELIASENFVSRAVMEAQGSVLTNKYA---EGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHS---GAQANMA  100 (405)
T ss_dssp             ECCTTCCCCCHHHHHHHTSGGGGCCC---CEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCSS---HHHHHHH
T ss_pred             eEeccCCcCCHHHHHHhcCcccCcCc---CCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcceeeccC---chHHHHH
Confidence            4566777776554 454445544432   1222111  2345555544    555678899877 44557   9999999


Q ss_pred             HHHHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC------CHHHHHHhhhcCCceEEEEecCCCCccccc
Q 013079          133 VLMQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS------DHEMVNSAIVQGRTKVLYFESISNPTLAVA  206 (450)
Q Consensus       133 al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~NptG~v~  206 (450)
                      ++.++++|||+|+..+..+++....-.........+++..++.+      |.+++++.++..++++|++-.-.+|  ...
T Consensus       101 v~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~--r~~  178 (405)
T d1kl1a_         101 VYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYP--RII  178 (405)
T ss_dssp             HHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCC
T ss_pred             HHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccccc--ccc
Confidence            99999999999999997776654321100000012344443332      8999999886779999998654443  467


Q ss_pred             CHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhh
Q 013079          207 NIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGAL  280 (450)
Q Consensus       207 ~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~  280 (450)
                      |++++.++|++.|+++++|.++      ++...+|.+. +|+++.|.||.+.+|-   ||+++.+.++.+++....-.. 
T Consensus       179 d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~-aDvvt~tThKtlrGPr---gg~I~~~~~~~~~i~~avfPg-  253 (405)
T d1kl1a_         179 DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPY-AHFVTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFPG-  253 (405)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTT-CSEEEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTTT-
T ss_pred             ChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhh-hhheeccccccccCCC---CceEEecchhHHHHHhhhCcc-
Confidence            9999999999999999999997      4445678754 8999999999998774   699999988888776543311 


Q ss_pred             hccCCCchHHHHHHH--Hc-cCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013079          281 MLLGPTMNPKVAFEL--SE-RIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL  357 (450)
Q Consensus       281 ~~~g~~~~~~~a~~~--~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~  357 (450)
                      ...|+.+...++.+.  .. .........++..++++.|.+.|.+.|+++...+..                  ..++++
T Consensus       254 ~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd------------------~H~vlv  315 (405)
T d1kl1a_         254 IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTD------------------NHLLLV  315 (405)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS------------------SSEEEE
T ss_pred             cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCc------------------cceeec
Confidence            233334443333222  11 123456677778999999999999999987643322                  238888


Q ss_pred             EeC----CHHHHHHHHHHhhc
Q 013079          358 DME----TEEKANRLMNYLQN  374 (450)
Q Consensus       358 ~l~----~~~~~~~~~~~l~~  374 (450)
                      ++.    +...++..+++..+
T Consensus       316 dl~~~~~~g~~ae~~Le~agI  336 (405)
T d1kl1a_         316 DLRPQQLTGKTAEKVLDEVGI  336 (405)
T ss_dssp             ECGGGTCCHHHHHHHHHHHTE
T ss_pred             cccccCCcHHHHHHHHHHcCe
Confidence            885    34445566666553

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.69  E-value=4.1e-15  Score=146.57  Aligned_cols=250  Identities=14%  Similarity=0.118  Sum_probs=153.2

Q ss_pred             ChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhc----------cCCCEEEEeCCCchhHHHHHHHhCCC---
Q 013079           98 NPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLC----------SSGGHVVAARTLYGGTHALLTHFFPR---  164 (450)
Q Consensus        98 ~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~----------~~gd~Vi~~~~~y~~~~~~~~~~~~~---  164 (450)
                      ......+++.++.+.+.+.+.|+.+   |++|+..+++...          .....++.....|++...........   
T Consensus        80 ~~~~~~~~~~~~~~~~~~~v~~~~s---gs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~  156 (404)
T d1z7da1          80 SVPLGICERYLTNLLGYDKVLMMNT---GAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKC  156 (404)
T ss_dssp             EHHHHHHHHHHHHHHTCSEEEEESS---HHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC-----------------
T ss_pred             hHHHHHHHHhhhhccccceeeeecc---ccchHHHHHHHHHHHHhhcccccccccccccccccCCCCccccccccccccc
Confidence            4567788888999999999999999   9999999887532          11236788888887754433211000   


Q ss_pred             --c---cCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCC--
Q 013079          165 --A---CNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVL--  233 (450)
Q Consensus       165 --~---~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~--  233 (450)
                        .   .-..+..++.++.+.++..+..+++.+|++|+++...|.+.+    +++|.++|+++|+++|+||+++++..  
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG  236 (404)
T d1z7da1         157 TSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTG  236 (404)
T ss_dssp             ---------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred             ccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccc
Confidence              0   011334456678899988885567899999999999998876    99999999999999999999966632  


Q ss_pred             -----CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccC--CcHHHHH
Q 013079          234 -----SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERI--PHLGLRM  306 (450)
Q Consensus       234 -----~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~--~~l~~~~  306 (450)
                           .-..+.+|+++  ++|.+++.+.++ |+++.++++.+.+..... ..+..|+.++..++...+..+  +.+.++.
T Consensus       237 ~~~~~e~~gv~PDivt--~gK~l~gG~~p~-~~v~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~  312 (404)
T d1z7da1         237 KLLCVHHYNVKPDVIL--LGKALSGGHYPI-SAVLANDDIMLVIKPGEH-GSTYGGNPLAASICVEALNVLINEKLCENA  312 (404)
T ss_dssp             SSSGGGGGTCCCSEEE--ECGGGGTTSSCC-EEEEECHHHHTTCCTTCC-CCTTTTCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             ccccccccCCCCCEEE--EcccccCCCCCc-ccccchHHHHccCCCCCc-CcCCCCCcchhhhhhhhhhhhhcchhhhhh
Confidence                 12233578887  999999655676 888899888776543322 222344433333333333211  1222222


Q ss_pred             HH-HHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCH-HHHHHHHHHhh
Q 013079          307 KE-HCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETE-EKANRLMNYLQ  373 (450)
Q Consensus       307 ~~-~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~-~~~~~~~~~l~  373 (450)
                      .+ .....+.+.+.+++++.. .                  +.+|.|.++.|++.+. .....+...+.
T Consensus       313 ~~~~~~~~~~l~~~~~~~~~v-~------------------~vrg~Gl~~~i~~~~~~~~~~~~~~~l~  362 (404)
T d1z7da1         313 EKLGGPFLENLKRELKDSKIV-R------------------DVRGKGLLCAIEFKNELVNVLDICLKLK  362 (404)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTE-E------------------EEEEETTEEEEEECTTTCCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHhcCCCe-E------------------EEEeeCcEEEEEEcCCcccHHHHHHHHH
Confidence            22 233334444444444431 1                  1226788999999832 22344555554

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.69  E-value=1.3e-16  Score=155.16  Aligned_cols=309  Identities=10%  Similarity=0.017  Sum_probs=184.8

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCCC---ChhHHHHHHHHHHHhCCC---eEEEecChHHHH-HHHHHHHHHhccCCCEEE
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRHF---NPTVLNLSRQMAALEGTE---AAYCTASDKAGM-SAISSVLMQLCSSGGHVV  145 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~~---~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt-~ai~~al~~l~~~gd~Vi  145 (450)
                      .++|.+.+....+++++.+.++...   ....++.++.|+++++++   .++|++|   ++ .++.+++..+..+|++++
T Consensus        19 ~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~g---s~t~~~ea~~~~l~~~~~~~l   95 (361)
T d2c0ra1          19 LERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQG---GASTQFAMIPMNFLKEGQTAN   95 (361)
T ss_dssp             HHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESS---HHHHHHHHHHHHHCCTTCEEE
T ss_pred             HHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC---CchHHHHHHHhccccCCCceE
Confidence            3677766666555567777777433   356789999999999984   3678777   54 445566666778888877


Q ss_pred             EeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079          146 AARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV  220 (450)
Q Consensus       146 ~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi  220 (450)
                      +.....  ....+.....+ .|..+..+..+     +++.+++.+ ..++ .+.   ++|.||.+.|+.+|.++|+++|+
T Consensus        96 ~~~~g~--~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~---v~~~tg~~~~~~~i~~~~~~~~a  167 (361)
T d2c0ra1          96 YVMTGS--WASKALKEAKL-IGDTHVAASSEASNYMTLPKLQEIQ-LQDN-AAY---LHLTSNETIEGAQFKAFPDTGSV  167 (361)
T ss_dssp             EEECSH--HHHHHHHHHHH-HSCEEEEEECGGGTTCSCCCGGGCC-CCTT-EEE---EEEESEETTTTEECSSCCCCTTS
T ss_pred             EEeech--hhhhhhhhhhh-cCceeeeeccccccccchhhhhhhc-ccCc-ceE---EEEecccceecceEEEeeccCCc
Confidence            655333  23333333333 57777766543     556666655 3333 333   45789999999999999999999


Q ss_pred             EEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHH------------HHHHHHHhhhhhhccCCC
Q 013079          221 TVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANL------------VNSMMDLHQGALMLLGPT  286 (450)
Q Consensus       221 ~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~------------~~~l~~~~~~~~~~~g~~  286 (450)
                      ++++|+++  +...++..++++  .+.|.+|.++++|..  ++++..+.+            +........    .....
T Consensus       168 l~~vDavss~g~~~id~~~~di--~~~s~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  239 (361)
T d2c0ra1         168 PLIGDMSSDILSRPFDLNQFGL--VYAGAQKNLGPSGVT--VVIVREDLVAESPKHLPTMLRYDTYVKNNS----LYNTP  239 (361)
T ss_dssp             CEEEECTTTTTSSCCCGGGCSE--EEEETTTTTCCSSCE--EEEEEGGGSSSCCTTSCGGGCHHHHHHTTT----CSSCC
T ss_pred             eEEEEeecccccccccccccee--EEEecccccccccCc--EEEEEhHHhhhCcccccccccccccccccc----ccccc
Confidence            99999998  666666666554  455688988887742  333332211            111111111    11222


Q ss_pred             chHH--HHHH---HHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC
Q 013079          287 MNPK--VAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME  360 (450)
Q Consensus       287 ~~~~--~a~~---~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~  360 (450)
                      ....  .+..   ..........+.++++..+..+......... ...... +.+              ....+++|.++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------rS~~~~~~~~~  304 (361)
T d2c0ra1         240 PSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD-VDS--------------RSDMNITFRLA  304 (361)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-GGG--------------BCSSEEEEECS
T ss_pred             cceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCC-hhh--------------ccceEEEEECC
Confidence            1111  1111   1112222333444455555555555554432 221111 110              11247899998


Q ss_pred             CHHHHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 013079          361 TEEKANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALS  440 (450)
Q Consensus       361 ~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~  440 (450)
                      +..+...+...|+.   .| |.+..|..+                         -+.+|||+. ...+.++++.|.++|+
T Consensus       305 ~~~~~~~~~~~L~~---~G-I~~~~G~~~-------------------------~g~~RIs~~-~~~~~edv~~Lv~~l~  354 (361)
T d2c0ra1         305 SEELEKEFVKASEQ---EG-FVGLKGHRS-------------------------VGGLRASIY-NAVPYESCEALVQFME  354 (361)
T ss_dssp             CHHHHHHHHHHHHH---TT-EESCBCCTT-------------------------TCSEEEECC-TTSCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHH---CC-CEEecCCCc-------------------------CCeEEEEec-CCCCHHHHHHHHHHHH
Confidence            76667788888875   34 555545211                         123999999 8888999999999999


Q ss_pred             Hhhhc
Q 013079          441 RMQDS  445 (450)
Q Consensus       441 ~~~~~  445 (450)
                      .+.+.
T Consensus       355 ~~~~~  359 (361)
T d2c0ra1         355 HFKRS  359 (361)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88654

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.69  E-value=4.8e-15  Score=148.90  Aligned_cols=224  Identities=14%  Similarity=0.073  Sum_probs=138.2

Q ss_pred             ccCCCChhHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHHHHHhccCCC-------EEEEeCCCchhHHHHHHHhCCCc
Q 013079           93 YSRHFNPTVLNLSRQMAALEGTEAAYCTASDKAGMSAISSVLMQLCSSGG-------HVVAARTLYGGTHALLTHFFPRA  165 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g~~~~~~tsg~~~gt~ai~~al~~l~~~gd-------~Vi~~~~~y~~~~~~~~~~~~~~  165 (450)
                      |+  +++.+.+|++.+++++|.+.++||+|   |++|+..+++.++++|+       .++.....|..+.....     .
T Consensus        71 y~--~~~~~~~le~~~a~l~g~~~~~~~~s---Gt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~-----~  140 (465)
T d1ax4a_          71 YA--GSRNYYDLKDKAKELFNYDYIIPAHQ---GRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE-----L  140 (465)
T ss_dssp             SS--SCHHHHHHHHHHHHHHCCCEEEEESS---HHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH-----H
T ss_pred             hc--cChHHHHHHHHHHHHHCCCEEEECCC---cHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH-----H
Confidence            55  57899999999999999999999999   99999999998875432       34555554444444332     1


Q ss_pred             cCeeEEEeCC---------------CCHHHHHHhhhc---CCceEEEEecCCCCcccc-c---CHHHHHHHHHhcCCEEE
Q 013079          166 CNITTTFVDI---------------SDHEMVNSAIVQ---GRTKVLYFESISNPTLAV-A---NIPELSRLAHDKGVTVV  223 (450)
Q Consensus       166 ~g~~v~~v~~---------------~d~~~l~~ai~~---~~t~lv~i~~~~NptG~v-~---~l~~I~~la~~~gi~li  223 (450)
                      .|.....+..               .|++++++++..   +.+.+++++.++|..|.. .   ++++|.++|++||+++|
T Consensus       141 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~  220 (465)
T d1ax4a_         141 NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVV  220 (465)
T ss_dssp             TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEE
T ss_pred             cCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEE
Confidence            3444433211               188999998832   245677777777776544 2   47899999999999999


Q ss_pred             EeCCCCC--C-----------CCCccC------CCCeEEEeCCCCccccCccceEEEEEcCHH--HHHHHHHHhhh--hh
Q 013079          224 VDNTFSP--L-----------VLSPAR------LGADVVVHSISKFISGGADIIAGAVCGPAN--LVNSMMDLHQG--AL  280 (450)
Q Consensus       224 vD~~~~~--~-----------~~~~~~------~g~di~~~S~sK~~g~~g~~igG~l~~~~~--~~~~l~~~~~~--~~  280 (450)
                      +|+++..  .           ..+...      ...|+++.|.+|.+++++   +|+++.++.  +..........  ..
T Consensus       221 ~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~  297 (465)
T d1ax4a_         221 MDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI---GGLVAIRDNEEIFTLARQRCVPMEGF  297 (465)
T ss_dssp             EECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS---CEEEEESSCHHHHHHHHHHHHHHTCS
T ss_pred             EECcchhhhhcccccccccccccchhhhccccccccceeEeecccCccccc---ceeEeecchHHHHHhhhccccccccC
Confidence            9999721  0           011110      026899999999988776   477776542  23322221110  11


Q ss_pred             hccCCCchHH-HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Q 013079          281 MLLGPTMNPK-VAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLY  329 (450)
Q Consensus       281 ~~~g~~~~~~-~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~  329 (450)
                      ...+...... .+..........+...++..++.++|.+.|++.+..+..
T Consensus       298 ~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~~~v~  347 (465)
T d1ax4a_         298 VTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQY  347 (465)
T ss_dssp             TTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCCBCS
T ss_pred             CCcchhhHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence            1112211111 111111111112334455566778899999998765443

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.9e-15  Score=144.28  Aligned_cols=284  Identities=17%  Similarity=0.138  Sum_probs=183.9

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHH----HHHHHHhCCCeE-EEecChHHHHHHHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLS----RQMAALEGTEAA-YCTASDKAGMSAISSVL  134 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~----~~iA~l~g~~~~-~~tsg~~~gt~ai~~al  134 (450)
                      ++.+|.+++.+.+ +.+-..|...|..-..+.+|= .+...+++++    ++..+++|++.+ +=..|   |+.|+.+++
T Consensus        30 ~LiaSEN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy-~G~~~iD~iE~la~~ra~~lF~a~~anVqp~S---Gs~AN~av~  105 (416)
T d1dfoa_          30 ELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYY-GGCEYVDIVEQLAIDRAKELFGADYANVQPHS---GSQANFAVY  105 (416)
T ss_dssp             ECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESS-SCCHHHHHHHHHHHHHHHHHHTCSEEECCCSS---HHHHHHHHH
T ss_pred             eEecCcccCCHHHHHHhcCcccCcccCCCCCCccc-CCChhHHHHHHHHHHHHHHHhCCCcceeeccc---CccHHHHHH
Confidence            4556777776554 444445554432211111111 1344444433    455668999876 44678   999999999


Q ss_pred             HHhccCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHH
Q 013079          135 MQLCSSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIP  209 (450)
Q Consensus       135 ~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~  209 (450)
                      .++++|||+|+..+..+++....-.........++...++++     |.+++++.+...++++|++-...+  ....|++
T Consensus       106 ~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S~y--~r~~d~~  183 (416)
T d1dfoa_         106 TALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAY--SGVVDWA  183 (416)
T ss_dssp             HHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECSSC--CSCCCHH
T ss_pred             HHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEeccccc--ccccCHH
Confidence            999999999999998887765432100000011233333322     899998887677999999865443  3678999


Q ss_pred             HHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcC---HHHHHHHHHHhhhhh
Q 013079          210 ELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGP---ANLVNSMMDLHQGAL  280 (450)
Q Consensus       210 ~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~---~~~~~~l~~~~~~~~  280 (450)
                      ++.++|++.|.++++|.++      ++...+|... +|+++.|.||.+.+|-   ||+++.+   +++.+++....-.. 
T Consensus       184 ~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~-aDvvt~tThKtlrGPr---ggiI~~~~~~~~~~~~i~~avfPg-  258 (416)
T d1dfoa_         184 KMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPH-AHVVTTTTHKTLAGPR---GGLILAKGGSEELYKKLNSAVFPG-  258 (416)
T ss_dssp             HHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTT-SSEEEEESSSTTCCCS---CEEEEESSCCHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHhcCceEEcchhhhhcceeccccCCcccc-cceeeeehhhcccCCC---ceEEEeccchHhHHHHHHhhhCcc-
Confidence            9999999999999999997      3345678776 6999999999998774   5888764   46667665433211 


Q ss_pred             hccCCCchHHHHHH--HHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEE
Q 013079          281 MLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCL  357 (450)
Q Consensus       281 ~~~g~~~~~~~a~~--~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~  357 (450)
                      ...|+.+...++.+  +...+ ..+....++..++++.|++.|.+.|+++...+..                  ..++.+
T Consensus       259 ~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTd------------------nHlvlv  320 (416)
T d1dfoa_         259 GQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTD------------------NHLFLV  320 (416)
T ss_dssp             TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS------------------SSEEEE
T ss_pred             cccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCC------------------CceeEE
Confidence            13334444443322  22223 2356677778999999999999999987654322                  237788


Q ss_pred             EeC----CHHHHHHHHHHhh
Q 013079          358 DME----TEEKANRLMNYLQ  373 (450)
Q Consensus       358 ~l~----~~~~~~~~~~~l~  373 (450)
                      ++.    +...++..+++..
T Consensus       321 dl~~~~~~G~~a~~~Le~~g  340 (416)
T d1dfoa_         321 DLVDKNLTGKEADAALGRAN  340 (416)
T ss_dssp             ECGGGTCCHHHHHHHHHHTT
T ss_pred             EecccCCCHHHHHHHHHHcC
Confidence            885    3344556665554

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.6e-16  Score=153.63  Aligned_cols=316  Identities=9%  Similarity=-0.044  Sum_probs=188.1

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCCC---ChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHH-HHhccCCCEEE
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRHF---NPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVL-MQLCSSGGHVV  145 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~~---~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al-~~l~~~gd~Vi  145 (450)
                      .++|.+.+.+..+++.+.|..+...   ....++.++.|+++++++   .++|++|   ++++++.+. ..+..+++.++
T Consensus        17 l~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~g---s~t~~~~a~~~~~~~~~~~v~   93 (360)
T d1bjna_          17 LKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHG---GGRGQFAAVPLNILGDKTTAD   93 (360)
T ss_dssp             HHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESS---HHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC---chHHHHhhhhhcccccccccc
Confidence            3666666665555566666666433   345789999999999974   3688888   666655544 44556667777


Q ss_pred             EeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079          146 AARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV  220 (450)
Q Consensus       146 ~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi  220 (450)
                      +....+.+..  +.....+ .|..+..+...     +.+.+++.+ ..+++++++.+.+|.||...++.++.  ++.+++
T Consensus        94 ~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~~~t~~~~~~~~i~--~~~~~~  167 (360)
T d1bjna_          94 YVDAGYWAAS--AIKEAKK-YCTPNVFDAKVTVDGLRAVKPMREW-QLSDNAAYMHYCPNETIDGIAIDETP--DFGADV  167 (360)
T ss_dssp             EEESSHHHHH--HHHHHTT-TSEEEEEECEEEETTEEEECCGGGC-CCCSSCSCEEECSEETTTTEECCCCC--CCCTTC
T ss_pred             eecccchhhh--hHHHHhh-cCccceeeccccCCCcchhhhhhhh-ccCCceeEEEecccccccCcccccee--cccccc
Confidence            6655544332  2233343 56655554322     344455555 77889999989999999998887664  466789


Q ss_pred             EEEEeCCCCCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHH---------HHHHHhhhhhhccCCCchHH-
Q 013079          221 TVVVDNTFSPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVN---------SMMDLHQGALMLLGPTMNPK-  290 (450)
Q Consensus       221 ~livD~~~~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~---------~l~~~~~~~~~~~g~~~~~~-  290 (450)
                      .+++|.+++....+....++|+++.|.+|.+++++..  ++++..+...+         .......... ....+.... 
T Consensus       168 ~v~vDa~~~~~~~~vd~~~~dv~~~ss~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  244 (360)
T d1bjna_         168 VVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLT--IVIVREDLLGKANIACPSILDYSILNDNGS-MFNTPPTFAW  244 (360)
T ss_dssp             CEEEECTTTTTSSCCCGGGCSEEEEETTTTTSSTTCE--EEEEEGGGCSCCCTTSCGGGCHHHHHHTTT-CSSCCCHHHH
T ss_pred             eeeeeeeccccceeeeeccceeEEEEcccccccCCCc--eeEeeehhhhhccccCCcchhhHHHHhhhh-hccccccchH
Confidence            9999999844444444446789999999999987753  44433221110         0011111010 111121111 


Q ss_pred             -HHHH---HHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHH
Q 013079          291 -VAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKAN  366 (450)
Q Consensus       291 -~a~~---~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~  366 (450)
                       .+..   ............+++.+.+..+.+.+...+.....+. +   .           ....++++|.+++.....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-----------~rs~~v~~f~~~~~~~~~  309 (360)
T d1bjna_         245 YLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVA-K---R-----------NRSRMNVPFQLADSALDK  309 (360)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBC-G---G-----------GBCSSEEEEEESSGGGHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCC-c---c-----------cccceEEEEEcCCcccHH
Confidence             1111   1112222333444555555666666666554332221 1   0           012358999998655567


Q ss_pred             HHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          367 RLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       367 ~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      .|+..|+..   | |.+..|.-+                         -+.+|||++ ..+++++|+.|.++|+++.+.
T Consensus       310 ~~~~~l~~~---G-i~~~~G~~~-------------------------~g~~Ris~~-~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         310 LFLEESFAA---G-LHALKGHRV-------------------------VGGMRASIY-NAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             HHHHHHHHT---T-EECCBCCTT-------------------------TCSEEEECC-TTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC---C-CEeecCCCc-------------------------cCeEEEEec-CCCCHHHHHHHHHHHHHHHHH
Confidence            788877753   3 554444110                         134999999 888999999999999987654

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=2.4e-15  Score=147.26  Aligned_cols=284  Identities=14%  Similarity=0.190  Sum_probs=179.3

Q ss_pred             CCChhHHHHHHHHHHHhCC--CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHH----------Hh
Q 013079           96 HFNPTVLNLSRQMAALEGT--EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLT----------HF  161 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~--~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~----------~~  161 (450)
                      ..++...++.+.+.+....  +.+.|++|   |+||+..|++...  .....|++....|++......          .+
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~v~f~~s---GseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~  152 (387)
T d1vefa1          76 LPTPMRGEFYRTLTAILPPELNRVFPVNS---GTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPF  152 (387)
T ss_dssp             SCCHHHHHHHHHHHHTSCTTEEEEEEESS---HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGG
T ss_pred             cCCchHHHHHHHhhhhccccceeeccccC---chHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCC
Confidence            3466777777777776654  35899999   9999999998542  234688888888877443221          12


Q ss_pred             CCCccCeeEEEeCCCCHHHHHHhhhcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC---
Q 013079          162 FPRACNITTTFVDISDHEMVNSAIVQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS---  234 (450)
Q Consensus       162 ~~~~~g~~v~~v~~~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~---  234 (450)
                      .+.  ...+..++.+|++.|++.+ .+++.+|++|.++...|.+.+    +++|.++|+++|+++|+||+++++...   
T Consensus       153 ~p~--~~~~~~~p~~d~~~l~~~~-~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~  229 (387)
T d1vefa1         153 LPL--VEPVEFIPYNDVEALKRAV-DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR  229 (387)
T ss_dssp             CSC--SSCEEEECTTCHHHHHHHC-CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             CCC--CCCceEeCCCCHHHHHHhc-CCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCC
Confidence            222  2356678888999999999 889999999998888888765    999999999999999999999666321   


Q ss_pred             ----ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHH
Q 013079          235 ----PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHC  310 (450)
Q Consensus       235 ----~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~  310 (450)
                          -..+.+|+++  ++|.+++ |..+ +.++..++.+..+..... ..+..|+.++..++...+..++. ....++..
T Consensus       230 ~~~~~~~v~PDi~~--~gK~l~g-G~~~-~~~~~~~~~~~~~~~~~~-g~T~~gnPla~aaa~a~L~~l~~-~~~~~~v~  303 (387)
T d1vefa1         230 FAFEHFGIVPDILT--LAKALGG-GVPL-GVAVMREEVARSMPKGGH-GTTFGGNPLAMAAGVAAIRYLER-TRLWERAA  303 (387)
T ss_dssp             STHHHHTCCCSEEE--ECGGGGT-TSSC-EEEEEEHHHHHTSCTTSS-CCSSTTCHHHHHHHHHHHHHHHH-HTTHHHHH
T ss_pred             cccccCCcCCceee--ecccCCC-Cccc-cccccceeeeeccccCCc-cccCCCCcchhhhcccchhhccc-ccccchHh
Confidence                1123579988  8999984 6777 666666666655432221 22233333333333333222211 12334456


Q ss_pred             HHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccccccccccccccc
Q 013079          311 HRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQFGFMAVSLGYYET  390 (450)
Q Consensus       311 ~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~g~i~vs~G~~~s  390 (450)
                      +..+++.+.|+++..    +...             +.+|.|.++.|++.... ...+...+..   .|.+....|    
T Consensus       304 ~~g~~l~~~L~~l~~----~~v~-------------~vrg~Gl~~~ie~~~~~-~~~~~~~~~~---~g~l~~~~g----  358 (387)
T d1vefa1         304 ELGPWFMEKLRAIPS----PKIR-------------EVRGMGLMVGLELKEKA-APYIARLEKE---HRVLALQAG----  358 (387)
T ss_dssp             HHHHHHHHHHHTSCC----TTEE-------------EEEEETTEEEEEESSCS-HHHHHHHHHH---HCEECEESS----
T ss_pred             hhhHHHHHHHHhcCC----CceE-------------EEeecceEEEEEEeCCc-hHHHHHHHHH---CCCeEEecC----
Confidence            666778888876532    1100             12367889999997432 2223332222   121222211    


Q ss_pred             cccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Q 013079          391 LMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSR  441 (450)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~  441 (450)
                                              .+.||++.. .-.+++.++.+.+++++
T Consensus       359 ------------------------~~~ir~~Pp-l~it~~~ld~~~~~i~~  384 (387)
T d1vefa1         359 ------------------------PTVIRFLPP-LVIEKEDLERVVEAVRA  384 (387)
T ss_dssp             ------------------------TTEEEECCC-TTCCHHHHHHHHHHHHH
T ss_pred             ------------------------CCEEEEECC-ccCCHHHHHHHHHHHHH
Confidence                                    356888877 65566666666666554

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.1e-14  Score=144.43  Aligned_cols=291  Identities=12%  Similarity=0.111  Sum_probs=169.1

Q ss_pred             CCChhHHHHHHHHHHHhCC---CeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCC------
Q 013079           96 HFNPTVLNLSRQMAALEGT---EAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPR------  164 (450)
Q Consensus        96 ~~~~~~~~l~~~iA~l~g~---~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~------  164 (450)
                      ..++...++.+.|.++...   +.++|++|   |+||+..|++...  ....+|+.....||+...........      
T Consensus        80 ~~~~~~~~la~~l~~~~p~~~~~~v~f~~s---GseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~  156 (425)
T d1sffa_          80 LAYEPYLELCEIMNQKVPGDFAKKTLLVTT---GSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSA  156 (425)
T ss_dssp             EECHHHHHHHHHHHHHSSCSSCEEEEEESS---HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTT
T ss_pred             ccCcHHHHHHHHHHhhhhhcccceeeeecc---ccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccC
Confidence            4467778889999998853   56899999   9999999998542  23467999998888855433211100      


Q ss_pred             ---ccCeeEEEeCCC-------------CHHHHHHhh-hcCCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEE
Q 013079          165 ---ACNITTTFVDIS-------------DHEMVNSAI-VQGRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVV  223 (450)
Q Consensus       165 ---~~g~~v~~v~~~-------------d~~~l~~ai-~~~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~li  223 (450)
                         .........+.+             +.+++.... ...++.+|++|.++...|.+.+    +++|.++|+++|+++|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI  236 (425)
T d1sffa_         157 GMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLI  236 (425)
T ss_dssp             TSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEE
T ss_pred             CcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEE
Confidence               001111111111             111111111 1246789999999888887753    8899999999999999


Q ss_pred             EeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhhhhhccCCCchHHHHHHHH
Q 013079          224 VDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQGALMLLGPTMNPKVAFELS  296 (450)
Q Consensus       224 vD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~  296 (450)
                      +||+++++..       ....+.+|+++  ++|.+++ |.++ |++++++++++.+..... ..++.|+.++..++...+
T Consensus       237 ~DEV~tG~gR~g~~~a~~~~gv~PDi~~--~gK~l~g-G~P~-~av~~~~~i~~~~~~~~~-~~T~~gnpl~~aaa~a~L  311 (425)
T d1sffa_         237 ADEVQSGAGRTGTLFAMEQMGVAPDLTT--FAKSIAG-GFPL-AGVTGRAEVMDAVAPGGL-GGTYAGNPIACVAALEVL  311 (425)
T ss_dssp             EECTTTTTTTTSSSSGGGGTTSCCSEEE--ECGGGGT-SSCC-EEEEEEHHHHTTSCTTSB-CCSSSSCHHHHHHHHHHH
T ss_pred             eccccccCCCcchhhHHHhcCCCcccee--cccccCC-Ccce-EEEEEcHHHHHhhCCCCC-CCCCCcCHHHHHHHHHHH
Confidence            9999966431       12233578888  9999985 6788 888888888776543322 222344444444443333


Q ss_pred             ccCC--cHHHHHHHH-HHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeC--------CHHHH
Q 013079          297 ERIP--HLGLRMKEH-CHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDME--------TEEKA  365 (450)
Q Consensus       297 ~~~~--~l~~~~~~~-~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~--------~~~~~  365 (450)
                      ..++  .+.++.... ....+.+.+.+++++...                   +.+|.|.++.|+|.        +....
T Consensus       312 ~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~-------------------~vrg~Gl~~~i~f~~~~~~~~~~~~~~  372 (425)
T d1sffa_         312 KVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIG-------------------DVRGLGAMIAIELFEDGDHNKPDAKLT  372 (425)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEE-------------------EEEEETTEEEEEEBGGGCTTSBCHHHH
T ss_pred             HHHHHhhhhhhhhhhhhhhhhhhhhhHhhCCceE-------------------EEEccccEEEEEEeccCccCCccHHHH
Confidence            3221  122222222 333333444444445411                   11267889999884        23334


Q ss_pred             HHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCC----CCHHHHHHHHHHHHHH
Q 013079          366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYL----GTLDQRWSQFEKALSR  441 (450)
Q Consensus       366 ~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~----~~~~~~i~~l~~al~~  441 (450)
                      ..+..++..   .|++....                          |...+.|||+.. .    +++++.++.|+++|++
T Consensus       373 ~~~~~~l~~---~Gvl~~~~--------------------------g~~~n~i~~~Pp-L~it~~eid~~l~~l~~al~e  422 (425)
T d1sffa_         373 AEIVARARD---KGLILLSC--------------------------GPYYNVLRILVP-LTIEDAQIRQGLEIISQCFDE  422 (425)
T ss_dssp             HHHHHHHHH---TTEECEEE--------------------------STTSCEEEECCC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---CCCEEecc--------------------------CCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHH
Confidence            556666543   23221111                          122467888876 5    4455555556666665


Q ss_pred             hh
Q 013079          442 MQ  443 (450)
Q Consensus       442 ~~  443 (450)
                      ++
T Consensus       423 ik  424 (425)
T d1sffa_         423 AK  424 (425)
T ss_dssp             HC
T ss_pred             hc
Confidence            54

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.61  E-value=1.2e-15  Score=147.83  Aligned_cols=311  Identities=10%  Similarity=-0.039  Sum_probs=173.4

Q ss_pred             HHHHHHhhcCCCCCCCCCccccCC---CChhHHHHHHHHHHHhCCC---eEEEecChHHHHHHHHHHHHH-hccCCCEEE
Q 013079           73 PETMRRMFAGELGPDRDFFIYSRH---FNPTVLNLSRQMAALEGTE---AAYCTASDKAGMSAISSVLMQ-LCSSGGHVV  145 (450)
Q Consensus        73 ~~~~~~~~~~~~~n~~~~~~y~r~---~~~~~~~l~~~iA~l~g~~---~~~~tsg~~~gt~ai~~al~~-l~~~gd~Vi  145 (450)
                      +++|.+.+....+.+.+.+..+..   .....++.|+.|+++++++   .+++++|   ++++++.+... +...++.++
T Consensus        19 ~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~g---t~~~~~~~~~~~~~~~~~~v~   95 (360)
T d1w23a_          19 LERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQG---GASLQFTMLPMNLLTKGTIGN   95 (360)
T ss_dssp             HHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESS---HHHHHHHHHHHHHCCTTCEEE
T ss_pred             HHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCC---cHHHHHHHHHhhhcccCcccc
Confidence            366665554443334444444432   2346789999999999974   3677888   77776655544 455677777


Q ss_pred             EeCCCchhHHHHHHHhCCCccCeeEEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCC
Q 013079          146 AARTLYGGTHALLTHFFPRACNITTTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGV  220 (450)
Q Consensus       146 ~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi  220 (450)
                      +....+.+..... .. .+ .+..+......     ++++++...  .....+.   ..|.||.+.|+++|.++|+++|+
T Consensus        96 ~~~~g~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~tg~~~~~~~i~~~~~~~g~  167 (360)
T d1w23a_          96 YVLTGSWSEKALK-EA-KL-LGETHIAASTKANSYQSIPDFSEFQ--LNENDAY---LHITSNNTIYGTQYQNFPEINHA  167 (360)
T ss_dssp             EEECSHHHHHHHH-HH-HT-TSEEEEEEECGGGTSCSCCCGGGCC--CCTTEEE---EEEESEETTTTEECSSCCCCCSS
T ss_pred             eeeccchhhhhHH-HH-HH-hhhcceeeccccccccchhhhhhcc--cccccce---eEecCCccccceeeeecccccee
Confidence            7766555443332 22 22 35444443322     223333322  2233333   45678999999999999999999


Q ss_pred             EEEEeCCC--CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHH---------HHHHhhhhhhccCCCchH
Q 013079          221 TVVVDNTF--SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNS---------MMDLHQGALMLLGPTMNP  289 (450)
Q Consensus       221 ~livD~~~--~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~---------l~~~~~~~~~~~g~~~~~  289 (450)
                      ++++|.++  ++...+..++++|+++.+.+|+++++    +|+++.++...+.         ......... ........
T Consensus       168 l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  242 (360)
T d1w23a_         168 PLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSGV----TVVIVKKDLLNTKVEQVPTMLQYATHIKSDS-LYNTPPTF  242 (360)
T ss_dssp             CEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTTC----EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTT-CSSCCCHH
T ss_pred             eEEeeccccccccccccccccceEEeeccccccCCc----ceeeEechhhhcccccCCcchhhhhhhhhhh-hcccccce
Confidence            99999998  77778888888999988877765543    2444433222110         000011000 11111111


Q ss_pred             -H-HHHH---HHccCCcHHHHHHHHHHHHHHHHHHHHhCCC-eeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHH
Q 013079          290 -K-VAFE---LSERIPHLGLRMKEHCHRALIFARRMKKLGL-KVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEE  363 (450)
Q Consensus       290 -~-~a~~---~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~-~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~  363 (450)
                       . ....   ............++....+............ ......    +..           ...++++|.+++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------rS~~vvsf~i~~~~  307 (360)
T d1w23a_         243 SIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAE----KGS-----------RSLMNVTFNLRNEE  307 (360)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSC----GGG-----------BCSSEEEEECSSHH
T ss_pred             eeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCC----hhh-----------cceeEEEEEcCCCc
Confidence             1 1111   1111111222223333333444444433322 222111    110           12348999998766


Q ss_pred             HHHHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 013079          364 KANRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQ  443 (450)
Q Consensus       364 ~~~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~  443 (450)
                      ....|...|...   | |++.-|..|                         -+.||+|+. ...+.+.+++|.+++.++.
T Consensus       308 ~~~~~~~~l~~~---G-I~~~~G~~~-------------------------~ggiRiS~~-~~~t~e~V~~Li~~~~~~~  357 (360)
T d1w23a_         308 LNQQFLAKAKEQ---G-FVGLNGHRS-------------------------VGGCRASIY-NAVPIDACIALRELMIQFK  357 (360)
T ss_dssp             HHHHHHHHHHHT---T-EESCBCCTT-------------------------TCSEEEECC-TTSCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHC---C-CeeeeCCCc-------------------------cCcEEEEee-CCCCHHHHHHHHHHHHHHH
Confidence            677888888753   3 565555221                         134999997 7778889999999998876


Q ss_pred             h
Q 013079          444 D  444 (450)
Q Consensus       444 ~  444 (450)
                      +
T Consensus       358 ~  358 (360)
T d1w23a_         358 E  358 (360)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.59  E-value=4.2e-14  Score=140.45  Aligned_cols=175  Identities=14%  Similarity=0.222  Sum_probs=117.9

Q ss_pred             ccccCCCChhHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHHHHHh--ccCCCEEEEeCCCchhHHHHHHHhC----
Q 013079           91 FIYSRHFNPTVLNLSRQMAALE--GTEAAYCTASDKAGMSAISSVLMQL--CSSGGHVVAARTLYGGTHALLTHFF----  162 (450)
Q Consensus        91 ~~y~r~~~~~~~~l~~~iA~l~--g~~~~~~tsg~~~gt~ai~~al~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~----  162 (450)
                      |......++...++.++|+++.  +.+.++|++|   |+||+..|++..  ....++|+.....|++.........    
T Consensus        75 ~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~s---GseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~  151 (431)
T d1zoda1          75 HLFSEMLSRPVVDLATRLANITPPGLDRALLLST---GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAG  151 (431)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESC---HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSC
T ss_pred             ccccccccHHHHHHHHHHHHhCCcccceeeeccc---ccchHHHHHHHHHHhcCCcceeecccccccccchhhccccccc
Confidence            3344556777788999999987  4578999999   999999999854  2335688888888888544331110    


Q ss_pred             -----CCccCeeEEEeCCC-----------------CHHHHHHhhh---cCCceEEEEecCCCCcccccC----HHHHHH
Q 013079          163 -----PRACNITTTFVDIS-----------------DHEMVNSAIV---QGRTKVLYFESISNPTLAVAN----IPELSR  213 (450)
Q Consensus       163 -----~~~~g~~v~~v~~~-----------------d~~~l~~ai~---~~~t~lv~i~~~~NptG~v~~----l~~I~~  213 (450)
                           +...+  ...++..                 +++.+...+.   .+++.+|++|+++...|.+.+    +++|.+
T Consensus       152 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~  229 (431)
T d1zoda1         152 RKGVGPAAVG--SFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKR  229 (431)
T ss_dssp             CSSSCCCCTT--EEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHH
T ss_pred             ccccCCcccC--ceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHH
Confidence                 10011  1111111                 2233333221   356889999998887777754    999999


Q ss_pred             HHHhcCCEEEEeCCCCCCCCC-------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          214 LAHDKGVTVVVDNTFSPLVLS-------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       214 la~~~gi~livD~~~~~~~~~-------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                      +|+++|+++|.||+++++...       -..+.+|+++  ++|.+++ |.++ +.++..++.......
T Consensus       230 lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~--~gK~l~g-G~p~-~av~~~~~~~~~~~~  293 (431)
T d1zoda1         230 KCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILT--LSKTLGA-GLPL-AAIVTSAAIEERAHE  293 (431)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECHHHHT-TSSC-EEEEECHHHHHHHHH
T ss_pred             HHHhcCceEEeccccccccccccccccccCCCCcchhc--ccccccc-cccc-ceeeeeecchhhhhc
Confidence            999999999999999665321       1223578988  9999994 5677 666677776665543

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.58  E-value=6.8e-14  Score=138.61  Aligned_cols=171  Identities=16%  Similarity=0.204  Sum_probs=122.8

Q ss_pred             CChhHHHHHHHHHHHhC-CCeEEEecChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHH---------HHhCCC
Q 013079           97 FNPTVLNLSRQMAALEG-TEAAYCTASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALL---------THFFPR  164 (450)
Q Consensus        97 ~~~~~~~l~~~iA~l~g-~~~~~~tsg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~---------~~~~~~  164 (450)
                      .......+.+.++++.+ .+.++|++|   |+||+..|++...  ...++|+.....||+.....         ....+.
T Consensus        90 ~~~~~~~la~~~~~~~~~~~~v~f~~s---GseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~  166 (427)
T d2gsaa_          90 PCALENVLAEMVNDAVPSIEMVRFVNS---GTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPS  166 (427)
T ss_dssp             CCHHHHHHHHHHHHHSTTCSEEEEESS---HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCS
T ss_pred             chhHHHHHHHHHHhhCCccccccccCC---cHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCC
Confidence            34566678888888765 467899999   9999999998542  23468899988888743211         011111


Q ss_pred             cc------CeeEEEeCCCCHHHHHHhhhc--CCceEEEEecCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCC
Q 013079          165 AC------NITTTFVDISDHEMVNSAIVQ--GRTKVLYFESISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLV  232 (450)
Q Consensus       165 ~~------g~~v~~v~~~d~~~l~~ai~~--~~t~lv~i~~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~  232 (450)
                      ..      ......++..|++++++.+++  .++.+|++|.+....|.+.|    +++|.++|++||+++|+||+++++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r  246 (427)
T d2gsaa_         167 SPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR  246 (427)
T ss_dssp             CSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT
T ss_pred             CCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce
Confidence            00      113344566799999999843  46789999999888898877    9999999999999999999996653


Q ss_pred             CC------ccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHH
Q 013079          233 LS------PARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMD  274 (450)
Q Consensus       233 ~~------~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~  274 (450)
                      ..      -..+..|+++  ++|.+|+ |.++ |++++++++++.+..
T Consensus       247 ~g~~~~~~~~gi~PDi~~--~gK~lgg-G~p~-~a~~~~~~i~~~~~~  290 (427)
T d2gsaa_         247 IAYGGVQEKFGVTPDLTT--LGKIIGG-GLPV-GAYGGKREIMQLVAP  290 (427)
T ss_dssp             TBTTCHHHHTTCCCSEEE--ECGGGGT-TSCC-EEEEECHHHHTTBTT
T ss_pred             ecccchHHhcCCCHHHHh--hhhccCC-Ccce-eeeeehHHHHHHhcc
Confidence            21      1123579988  8999984 6777 777888888876643

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.57  E-value=7.2e-14  Score=136.04  Aligned_cols=286  Identities=13%  Similarity=0.140  Sum_probs=170.1

Q ss_pred             cccccCccccCCH-HHHHHhhcCCCC--CCCCCccccCCCChhHHH-HHHHHHHHhCCCeE-----EEecChHHHHHHHH
Q 013079           61 SIEASATFTVMEP-ETMRRMFAGELG--PDRDFFIYSRHFNPTVLN-LSRQMAALEGTEAA-----YCTASDKAGMSAIS  131 (450)
Q Consensus        61 pi~~att~~~~~~-~~~~~~~~~~~~--n~~~~~~y~r~~~~~~~~-l~~~iA~l~g~~~~-----~~tsg~~~gt~ai~  131 (450)
                      ++.+|.+++.+.+ +.+-..|...|.  -|..-|.-|-.--..+|. +.++..++++++.+     +=.-|   |+.|+.
T Consensus        31 ~LiaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~S---Gs~An~  107 (463)
T d2a7va1          31 ELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYS---GSPANL  107 (463)
T ss_dssp             ECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSS---HHHHHH
T ss_pred             eEeccCCcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccc---cHHHHH
Confidence            4566777776654 555455554432  222112111111122333 35667778898753     44567   999999


Q ss_pred             HHHHHhccCCCEEEEeCCCchhHHHHHH--HhCC-CccCe--eEEEeCCC------CHHHHHHhhhcCCceEEEEecCCC
Q 013079          132 SVLMQLCSSGGHVVAARTLYGGTHALLT--HFFP-RACNI--TTTFVDIS------DHEMVNSAIVQGRTKVLYFESISN  200 (450)
Q Consensus       132 ~al~~l~~~gd~Vi~~~~~y~~~~~~~~--~~~~-~~~g~--~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~~~N  200 (450)
                      +++.++++|||+|+..+..+++....-.  .... ...|.  +...+..+      |.+++++.+...++++|++-.-.+
T Consensus       108 av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y  187 (463)
T d2a7va1         108 AVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAY  187 (463)
T ss_dssp             HHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC
T ss_pred             HHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEeccccc
Confidence            9999999999999988877776653320  0000 00122  22222222      899999888667999999865444


Q ss_pred             CcccccCHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH--------
Q 013079          201 PTLAVANIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA--------  266 (450)
Q Consensus       201 ptG~v~~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~--------  266 (450)
                      |  ...|.+++.++|++.|.++++|.++      +++..+|.+. +|+++.|.||.+.+|-   ||+++.++        
T Consensus       188 ~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~-aDvvt~tTHKTlrGPr---gGiIl~~~~~~~~~~~  261 (463)
T d2a7va1         188 A--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPK  261 (463)
T ss_dssp             C--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGT-CSEEEEESSGGGCSCS---CEEEEEECSEEEEETT
T ss_pred             c--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhh-hhhhhchhhhhhcCCC---ceEEEEcccccccccc
Confidence            3  5679999999999999999999996      4455678765 7999999999998764   68887654        


Q ss_pred             -------HHHHHHHHHhhhhhhccCCCchHHHHHHHH--ccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCc
Q 013079          267 -------NLVNSMMDLHQGALMLLGPTMNPKVAFELS--ERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHP  336 (450)
Q Consensus       267 -------~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~--~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p  336 (450)
                             ++.+++...--. ....|+.+...++.+..  ... ....+..++..++++.|++.|.+.|+++...+..+  
T Consensus       262 ~~~~~~~~~~~~i~~avFP-g~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~vv~ggTdn--  338 (463)
T d2a7va1         262 TGREIPYTFEDRINFAVFP-SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDN--  338 (463)
T ss_dssp             TEEEEECCCHHHHHHHHTT-TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSS--
T ss_pred             cCccchhHHHHHhhhhcCc-ccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCC--
Confidence                   455666543221 11334444444333321  122 34566777789999999999999999876544222  


Q ss_pred             hhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013079          337 HHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN  374 (450)
Q Consensus       337 ~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~~~~~l~~  374 (450)
                                      .++.+++.    +...++..++...+
T Consensus       339 ----------------Hlvlvdl~~~~~~G~~ae~~Le~~gI  364 (463)
T d2a7va1         339 ----------------HLVLVDLRPKGLDGARAERVLELVSI  364 (463)
T ss_dssp             ----------------SEEEEECTTTTCCHHHHHHHHHHTTE
T ss_pred             ----------------ceeeeeccccCCCHHHHHHHHHhccC
Confidence                            27888885    34445666666553

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=3.8e-13  Score=133.12  Aligned_cols=297  Identities=11%  Similarity=0.152  Sum_probs=178.1

Q ss_pred             ccCCCChhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc-------cCCCEEEEeCCCchhHHHHHHHhCC
Q 013079           93 YSRHFNPTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC-------SSGGHVVAARTLYGGTHALLTHFFP  163 (450)
Q Consensus        93 y~r~~~~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~-------~~gd~Vi~~~~~y~~~~~~~~~~~~  163 (450)
                      ++...++...++.+++.+...  .+.++|++|   |+||+..+++...       ....+|+.....|++..........
T Consensus        80 ~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~s---GseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~  156 (429)
T d1s0aa_          80 FGGITHAPAIELCRKLVAMTPQPLECVFLADS---GSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCD  156 (429)
T ss_dssp             CSSEECHHHHHHHHHHHHHSCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSC
T ss_pred             cCCccchHHHHHHHHHHhhhccCcceeeeccc---cccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcC
Confidence            344556667777788887764  356899999   9999999987542       1235799888888775432211100


Q ss_pred             ------Cc---cCeeEEEeC-----------CCCHHHHHHhhh--cCCceEEEEecCC-CCccccc-C---HHHHHHHHH
Q 013079          164 ------RA---CNITTTFVD-----------ISDHEMVNSAIV--QGRTKVLYFESIS-NPTLAVA-N---IPELSRLAH  216 (450)
Q Consensus       164 ------~~---~g~~v~~v~-----------~~d~~~l~~ai~--~~~t~lv~i~~~~-NptG~v~-~---l~~I~~la~  216 (450)
                            ..   ........+           ..+++++++.+.  .+++.+|++|.+. +..|.+. |   +++|.++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~  236 (429)
T d1s0aa_         157 PDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICD  236 (429)
T ss_dssp             TTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHH
T ss_pred             CccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHH
Confidence                  00   000111111           114555554442  3578899999875 5555543 3   899999999


Q ss_pred             hcCCEEEEeCCCCCCCC-------CccCCCCeEEEeCCCCccccCccceEEEEEcCHHHHHHHHHHhhh----hhhccCC
Q 013079          217 DKGVTVVVDNTFSPLVL-------SPARLGADVVVHSISKFISGGADIIAGAVCGPANLVNSMMDLHQG----ALMLLGP  285 (450)
Q Consensus       217 ~~gi~livD~~~~~~~~-------~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~~~~~~l~~~~~~----~~~~~g~  285 (450)
                      ++|+++|+||+++++..       ....+.+|+++  ++|.+++.+.++ ++++.++++.+.+.....+    ..+..|+
T Consensus       237 ~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~--~gK~l~gG~~p~-~av~~~~~i~~~~~~~~~~~~~~~~T~~gn  313 (429)
T d1s0aa_         237 REGILLIADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGTMTL-SATLTTREVAETISNGEAGCFMHGPTFMGN  313 (429)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSCC-EEEEECHHHHHHHHTSTTSSCSCCCTTTTC
T ss_pred             HcCcceehhhccccccccccccccccceecccccc--cccccccccccc-cchhhHHHHHhccCCCCCcceeecCCCCCC
Confidence            99999999999966632       12233579998  899998776787 8888999888877542211    1223444


Q ss_pred             CchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHH
Q 013079          286 TMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKA  365 (450)
Q Consensus       286 ~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~  365 (450)
                      .++..++...+..++. +....+..+..++|.+.|+++..   .|.+.             +.+|.|.++.|++......
T Consensus       314 p~~~aaa~a~L~~i~~-~~~~~~~~~~g~~l~~~L~~l~~---~~~v~-------------~vrg~Gl~~~~e~~~~~~~  376 (429)
T d1s0aa_         314 PLACAAANASLAILES-GDWQQQVADIEVQLREQLAPARD---AEMVA-------------DVRVLGAIGVVETTHPVNM  376 (429)
T ss_dssp             HHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHGGGGG---CTTEE-------------EEEEETTEEEEEESSCBCH
T ss_pred             cccchhhhcccccccc-ccccchhhHHHHHHHHHHHHhcc---CCceE-------------EEeecccEEEEEecCcccH
Confidence            4444444443332222 12334445556677777765311   11110             2237889999999854445


Q ss_pred             HHHHHHhhccccccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          366 NRLMNYLQNYAQFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       366 ~~~~~~l~~~~~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      ..+...+..   .|++. .          +                  ..+.|||+.. ..-+++.++.+.++|++.-++
T Consensus       377 ~~~~~~~~~---~Gl~~-~----------~------------------~g~~i~~~Pp-l~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         377 AALQKFFVE---QGVWI-R----------P------------------FGKLIYLMPP-YIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             HHHHHHHHH---TTEEC-C----------C------------------BTTEEEECCC-TTCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHH---CCcEE-E----------e------------------cCCEEEEeCC-cCCCHHHHHHHHHHHHHHHHh
Confidence            566666543   23221 0          0                  0357899877 656677777777777665433

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.56  E-value=2.6e-13  Score=132.56  Aligned_cols=285  Identities=15%  Similarity=0.168  Sum_probs=182.6

Q ss_pred             ccccccCccccCCH-HHHHHhhcCCCCCCCCCccccCCCChhHHHHH----HHHHHHhCCC----eE-EEecChHHHHHH
Q 013079           60 MSIEASATFTVMEP-ETMRRMFAGELGPDRDFFIYSRHFNPTVLNLS----RQMAALEGTE----AA-YCTASDKAGMSA  129 (450)
Q Consensus        60 ~pi~~att~~~~~~-~~~~~~~~~~~~n~~~~~~y~r~~~~~~~~l~----~~iA~l~g~~----~~-~~tsg~~~gt~a  129 (450)
                      -++.+|..++.+.+ +.+-..|...|.--..+.+|- .+...+++++    ++..++++++    .+ +=.-|   |+.|
T Consensus        34 l~LIaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy-~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~S---Gs~A  109 (470)
T d1rv3a_          34 LELIASENFASRAVLEALGSCLNNKYSLGYPGQRYY-GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYS---GSPA  109 (470)
T ss_dssp             EECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESS-SCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSS---HHHH
T ss_pred             ceEecCCCcCCHHHHHHhcchhcccccCCCCCcccc-CCchhHHHHHHHHHHHHHHHhCCChhhccccccccC---CccH
Confidence            35667777776654 555445554432111111221 2455665555    4447788876    23 44567   9999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCchhHHHHHHHhCCC-cc-----CeeEEEeCCC------CHHHHHHhhhcCCceEEEEec
Q 013079          130 ISSVLMQLCSSGGHVVAARTLYGGTHALLTHFFPR-AC-----NITTTFVDIS------DHEMVNSAIVQGRTKVLYFES  197 (450)
Q Consensus       130 i~~al~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~~-----g~~v~~v~~~------d~~~l~~ai~~~~t~lv~i~~  197 (450)
                      +.+++.++++|||+|+..+..+++....- ..... ..     .++...++++      |.+++++.....++++|++-.
T Consensus       110 n~av~~all~pgD~im~~~l~~GGHlshg-~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~  188 (470)
T d1rv3a_         110 NFAVYTALVEPHGRIMGLDLPDGGHLTHG-FMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT  188 (470)
T ss_dssp             HHHHHHHHTCTTCEEEEECGGGTCCGGGC-CBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred             HHHHHHHhcCCCCeEeeeccccCCccccc-ccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeech
Confidence            99999999999999999887776654321 00000 00     1234343322      889999887667999999865


Q ss_pred             CCCCcccccCHHHHHHHHHhcCCEEEEeCCC------CCCCCCccCCCCeEEEeCCCCccccCccceEEEEEcCH-----
Q 013079          198 ISNPTLAVANIPELSRLAHDKGVTVVVDNTF------SPLVLSPARLGADVVVHSISKFISGGADIIAGAVCGPA-----  266 (450)
Q Consensus       198 ~~NptG~v~~l~~I~~la~~~gi~livD~~~------~~~~~~~~~~g~di~~~S~sK~~g~~g~~igG~l~~~~-----  266 (450)
                      -.+|  ...|.+++.++|++.|+++++|.++      ++...+|.+. +|+++.|.||.+.||-   ||+++.++     
T Consensus       189 S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~-aDvvt~tTHKtlrGPr---gGiI~~~~~~~~~  262 (470)
T d1rv3a_         189 SCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEH-CHVVTTTTHKTLRGCR---AGMIFYRRGVRSV  262 (470)
T ss_dssp             SSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGT-CSEEEEESSGGGCCCS---CEEEEEECSBCC-
T ss_pred             hhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhhe-eeeeeeehhhhccCCc---ceEEEEccccccc
Confidence            5443  5679999999999999999999997      3345678865 6999999999997664   58887543     


Q ss_pred             ----------HHHHHHHHHhhhhhhccCCCchHHHHHH--HHccC-CcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCC
Q 013079          267 ----------NLVNSMMDLHQGALMLLGPTMNPKVAFE--LSERI-PHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLE  333 (450)
Q Consensus       267 ----------~~~~~l~~~~~~~~~~~g~~~~~~~a~~--~~~~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~  333 (450)
                                ++.+++....-. ....|+.+...++.+  +.... ....+..++..++++.|++.|.+.|+++..-+..
T Consensus       263 ~~~~~~~~~~~~~~~i~~avFP-g~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~v~~ggTd  341 (470)
T d1rv3a_         263 DPKTGKEILYNLESLINSAVFP-GLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSD  341 (470)
T ss_dssp             ------CCBCCHHHHHHHHHTT-TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS
T ss_pred             cccccchhHHHHHHHHhhhcCc-cccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCceeccCCCC
Confidence                      255556443221 112334444443332  22222 3466677778999999999999999987654422


Q ss_pred             CCchhHHHHHHhccCCCcCcEEEEEeC----CHHHHHHHHHHhhc
Q 013079          334 DHPHHELLKSMANKEYGFGGLLCLDME----TEEKANRLMNYLQN  374 (450)
Q Consensus       334 ~~p~~~l~~~~~~~~~g~g~~~~~~l~----~~~~~~~~~~~l~~  374 (450)
                                        ..++.+++.    +...++..++...+
T Consensus       342 ------------------nHlvlvdl~~~g~~g~~ae~~Le~~gI  368 (470)
T d1rv3a_         342 ------------------NHLILVDLRSKGTDGGRAEKVLEACSI  368 (470)
T ss_dssp             ------------------SSEEEEEGGGGTCCHHHHHHHHHHTTE
T ss_pred             ------------------CceEEEeecccCCcHHHHHHHHHHcCc
Confidence                              237888875    44456666666553

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=2.2e-12  Score=128.71  Aligned_cols=247  Identities=15%  Similarity=0.140  Sum_probs=137.3

Q ss_pred             hhHHHHHHHHHHHhC--CCeEEEecChHHHHHHHHHHHHHhc----------------------------cCCCEEEEeC
Q 013079           99 PTVLNLSRQMAALEG--TEAAYCTASDKAGMSAISSVLMQLC----------------------------SSGGHVVAAR  148 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g--~~~~~~tsg~~~gt~ai~~al~~l~----------------------------~~gd~Vi~~~  148 (450)
                      ...++|.+.|.++..  .+.++|++|   |+||+..|++...                            .+...||+..
T Consensus       100 ~~a~~lae~l~~~~~~~~~~v~f~~s---GseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~  176 (461)
T d1ohwa_         100 NFVEKLRESLLSVAPKGMSQLITMAC---GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFM  176 (461)
T ss_dssp             THHHHHHHTGGGGCCTTCCEEEEESS---HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEET
T ss_pred             HHHHHHHHHHHhhhccCcceeeeecc---hhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEec
Confidence            345666666666543  367899999   9999999997542                            1224789999


Q ss_pred             CCchhHHHHHHH----------hCCCccCeeEEEeCC-----------------CCHHHHHHhhh-----cCCceEEEEe
Q 013079          149 TLYGGTHALLTH----------FFPRACNITTTFVDI-----------------SDHEMVNSAIV-----QGRTKVLYFE  196 (450)
Q Consensus       149 ~~y~~~~~~~~~----------~~~~~~g~~v~~v~~-----------------~d~~~l~~ai~-----~~~t~lv~i~  196 (450)
                      ..||+.......          ..+. .+......+.                 .+.+++++.+.     .+++.+|++|
T Consensus       177 ~syHG~t~~a~s~tg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivE  255 (461)
T d1ohwa_         177 GAFHGRTMGCLATTHSKAIHKIDIPS-FDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVE  255 (461)
T ss_dssp             TCCCCSSHHHHHTCCSCHHHHTTCCC-CCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCcCCCCcccccccCCcccccccccc-cCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeec
Confidence            998874322211          1111 1111111110                 02344554441     2578899999


Q ss_pred             cCCCCcccccC----HHHHHHHHHhcCCEEEEeCCCCCCCCC-----cc--CC--CCeEEEeCCCCccccCccceEEEEE
Q 013079          197 SISNPTLAVAN----IPELSRLAHDKGVTVVVDNTFSPLVLS-----PA--RL--GADVVVHSISKFISGGADIIAGAVC  263 (450)
Q Consensus       197 ~~~NptG~v~~----l~~I~~la~~~gi~livD~~~~~~~~~-----~~--~~--g~di~~~S~sK~~g~~g~~igG~l~  263 (450)
                      .++...|.+.+    +++|.++|++||+++|+||+++++...     ..  ..  .+|+++  ++|.+++      |++.
T Consensus       256 Pi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~--~gK~l~~------g~~~  327 (461)
T d1ohwa_         256 PIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT------GGFF  327 (461)
T ss_dssp             SSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEE--ECGGGSS------EEEE
T ss_pred             cccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhh--hhhcccc------cccc
Confidence            99988887754    889999999999999999999665321     11  12  268887  8898873      2232


Q ss_pred             cCHHHHHHHHHHhhhhhhccCCCchHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHH
Q 013079          264 GPANLVNSMMDLHQGALMLLGPTMNPKVAFELSERIPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKS  343 (450)
Q Consensus       264 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~  343 (450)
                      ....+.. .... ....+..++.+...++...+..++. +..+++..+..++|.+.|+++..+  +|..-          
T Consensus       328 ~~~~~~~-~~~~-~~~~T~~g~p~~~aaa~a~l~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~--~~~~i----------  392 (461)
T d1ohwa_         328 HKEEFRP-NAPY-RIFNTWLGDPSKNLLLAEVINIIKR-EDLLSNAAHAGKVLLTGLLDLQAR--YPQFI----------  392 (461)
T ss_dssp             ECGGGSC-SSTT-SSCCSCSSCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH--CTTTC----------
T ss_pred             ccccccc-cccc-ccccccccccccchhhcccchhhhh-hhHHHHHHHHHHHHHHHHHHHHhh--CCCce----------
Confidence            2222211 0001 1111233333333333333322211 112233344445555555542110  11100          


Q ss_pred             HhccCCCcCcEEEEEeCCHHHHHHHHHHhhc
Q 013079          344 MANKEYGFGGLLCLDMETEEKANRLMNYLQN  374 (450)
Q Consensus       344 ~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~  374 (450)
                        .+.+|.|.++.|++++.+...++...+..
T Consensus       393 --~~vrG~Gl~~~ie~~~~~~~~~i~~~~~~  421 (461)
T d1ohwa_         393 --SRVRGRGTFCSFDTPDESIRNKLISIARN  421 (461)
T ss_dssp             --EEEEEETTEEEEECSSHHHHHHHHHHHHH
T ss_pred             --EEeeeeeEEEEEEcCCHHHHHHHHHHHHH
Confidence              02236888999999987777788877764

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=4.7e-11  Score=116.86  Aligned_cols=287  Identities=13%  Similarity=0.125  Sum_probs=179.3

Q ss_pred             hhHHHHHHHHHHHhCCCeEEEe-cChHHHHHHHHHHHHHhc--cCCCEEEEeCCCchhHHHHHHHhCCCccCeeEEEeCC
Q 013079           99 PTVLNLSRQMAALEGTEAAYCT-ASDKAGMSAISSVLMQLC--SSGGHVVAARTLYGGTHALLTHFFPRACNITTTFVDI  175 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~~~t-sg~~~gt~ai~~al~~l~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~v~~v~~  175 (450)
                      +.+-++++.|+++.|-+.+-+. ..   |..|...++....  ...++++++...|+.++........ ..|++++.++.
T Consensus       108 q~l~e~q~~l~eltGmd~~n~s~~~---ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~-~~g~~vv~v~~  183 (437)
T d1wyua1         108 QATFEYQTMIAELAGLEIANASMYD---GATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLE-AVGAKLLTLPL  183 (437)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSS---HHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHH-HTTCEEEEECC
T ss_pred             HHHHHHHHHHHHhhCCCccccCchH---HHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcc-cceeeEEeeec
Confidence            4567899999999998876322 23   4444444443222  3456899999999988877654444 37999999887


Q ss_pred             CCHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC--CCCCCCccCCCCeEEEeCCCCc---
Q 013079          176 SDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF--SPLVLSPARLGADVVVHSISKF---  250 (450)
Q Consensus       176 ~d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~--~~~~~~~~~~g~di~~~S~sK~---  250 (450)
                      ++.......+ .+++.+|++++||. .|.+.++++|.+++++.|.++++|...  .....+|.++|+|+++++ +|.   
T Consensus       184 ~~~~~~~~~~-~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~-~q~fg~  260 (437)
T d1wyua1         184 EGGRTPLPEV-GEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGD-GQSLGL  260 (437)
T ss_dssp             BTTBCCCCCC-CTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEE-CTTTTC
T ss_pred             ccccchhhhh-ccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEeec-cceecc
Confidence            6432222235 67899999999954 799999999999999999998888654  223346788899999988 444   


Q ss_pred             ---cccCccceEEEEEcCHHHHHHHHH-------------------------HhhhhhhccCCCc---hHH--HHHHHHc
Q 013079          251 ---ISGGADIIAGAVCGPANLVNSMMD-------------------------LHQGALMLLGPTM---NPK--VAFELSE  297 (450)
Q Consensus       251 ---~g~~g~~igG~l~~~~~~~~~l~~-------------------------~~~~~~~~~g~~~---~~~--~a~~~~~  297 (450)
                         +|+|+   +|++.+++++...+-.                         .++......-.+.   ...  .+++...
T Consensus       261 p~g~GGP~---~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~l  337 (437)
T d1wyua1         261 PMGFGGPH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL  337 (437)
T ss_dssp             CCGGGCSC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH
T ss_pred             ccCCCcCc---cccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhc
Confidence               33344   4888888766543311                         0110000111111   111  2233333


Q ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHhCC-CeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccc
Q 013079          298 RIPHLGLRMKEHCHRALIFARRMKKLG-LKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYA  376 (450)
Q Consensus       298 ~~~~l~~~~~~~~~~~~~l~~~L~~~~-~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~  376 (450)
                      +.+-+.+..++...++.++.+.|.+++ ..+..+.    +              +-.-+.++++.  .+..+.++|..  
T Consensus       338 G~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~----~--------------~f~ef~v~~~~--~~~~i~k~L~d--  395 (437)
T d1wyua1         338 GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK----P--------------FFNEFALALPK--DPEAVRRALAE--  395 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS----S--------------BCSEEEEECSS--CHHHHHHHHHH--
T ss_pred             CcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCC----C--------------eeeEEEEECCC--CHHHHHHHHHh--
Confidence            445566666677888999999998874 3443332    1              11135555542  24556666654  


Q ss_pred             cccccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHh
Q 013079          377 QFGFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRM  442 (450)
Q Consensus       377 ~~g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~  442 (450)
                       +|+.+   |..    ..+                -+.++.+.|++. ..++.+.++.|.++|+++
T Consensus       396 -~G~~~---~~~----~~~----------------~~~~~~lli~~T-E~~tkeeiD~~v~al~ei  436 (437)
T d1wyua1         396 -RGFHG---ATP----VPR----------------EYGENLALFAAT-ELHEEEDLLALREALKEV  436 (437)
T ss_dssp             -TTCCC---CEE----CCT----------------TSCSSEEEEECC-TTCCHHHHHHHHHHHHHH
T ss_pred             -CCCCC---Ccc----ccc----------------CCCCCeEEEecC-CCCCHHHHHHHHHHHHHh
Confidence             23211   100    000                112578999999 888999999999999875

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.82  E-value=7.4e-08  Score=94.90  Aligned_cols=294  Identities=17%  Similarity=0.131  Sum_probs=171.5

Q ss_pred             hhHHHHHHHHHHHhCCCeEE--EecChHHHHHHHHHHHHHh---ccCC----CEEEEeCCCchhHHHHHHHhCCCccCee
Q 013079           99 PTVLNLSRQMAALEGTEAAY--CTASDKAGMSAISSVLMQL---CSSG----GHVVAARTLYGGTHALLTHFFPRACNIT  169 (450)
Q Consensus        99 ~~~~~l~~~iA~l~g~~~~~--~tsg~~~gt~ai~~al~~l---~~~g----d~Vi~~~~~y~~~~~~~~~~~~~~~g~~  169 (450)
                      +.+-+++..|+++.|-+-+=  ...|   +|.+-.+++.+.   -+.+    ..+++..+.++.........    .+..
T Consensus       106 QalfEfQtmi~eLTGMdvaNaS~yDG---atA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  178 (471)
T d1wyub1         106 RLMWELGEYLKALTGMDAITLEPAAG---AHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASM----AGYQ  178 (471)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCSSH---HHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHH----TTCE
T ss_pred             HHHHHHHHHHHHHhCCCccccccchH---HHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeec----ccce
Confidence            45678999999999987542  2334   443333333222   1222    23455555565554443222    3445


Q ss_pred             EEEeCCC-----CHHHHHHhhhcCCceEEEEecCCCCcccccCHHHHHHHHHhcCCEEEEeCCC---CCCCCCccCCCCe
Q 013079          170 TTFVDIS-----DHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF---SPLVLSPARLGAD  241 (450)
Q Consensus       170 v~~v~~~-----d~~~l~~ai~~~~t~lv~i~~~~NptG~v~~l~~I~~la~~~gi~livD~~~---~~~~~~~~~~g~d  241 (450)
                      +..++.+     |.+.+.... .+++.++++.+|++..+.....+++++++++++..+++|.+.   ......|-..+.|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~~g~d  257 (471)
T d1wyub1         179 VREIPSGPEGEVDLEALKREL-GPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFD  257 (471)
T ss_dssp             EEEECBCTTSSBCHHHHHHHC-STTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCS
T ss_pred             eecccccccccccchhhhhhh-hccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhhccccCccccc
Confidence            5444432     788888877 788999999999887655567999999999999998988764   1113445566888


Q ss_pred             EEEeCCCCccccC---ccceEEEEEcCHHHHHHHHHH--------------h-hhhhhccCCCc---hHH--HHHHHHcc
Q 013079          242 VVVHSISKFISGG---ADIIAGAVCGPANLVNSMMDL--------------H-QGALMLLGPTM---NPK--VAFELSER  298 (450)
Q Consensus       242 i~~~S~sK~~g~~---g~~igG~l~~~~~~~~~l~~~--------------~-~~~~~~~g~~~---~~~--~a~~~~~~  298 (450)
                      +++...++.+|.|   |.+-.|++..++++...+-..              | ++..+....+.   ...  .+++.+.+
T Consensus       258 iv~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG  337 (471)
T d1wyub1         258 VVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG  337 (471)
T ss_dssp             EEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence            8888888876543   222238888887776544110              0 00000111111   111  22334445


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCchhHHHHHHhccCCCcCcEEEEEeCCHHHHHHHHHHhhccccc
Q 013079          299 IPHLGLRMKEHCHRALIFARRMKKLGLKVLYPGLEDHPHHELLKSMANKEYGFGGLLCLDMETEEKANRLMNYLQNYAQF  378 (450)
Q Consensus       299 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~v~~p~~~~~p~~~l~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~l~~~~~~  378 (450)
                      .+-+.+..+....++.+++++|+..+.++.+++    |.              =.-+.+.++....+..+.++|..   +
T Consensus       338 ~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~~~----~f--------------f~EFvv~~~~~~~~~~i~k~L~~---~  396 (471)
T d1wyub1         338 LEGLKKAAALAVLNARYLKELLKEKGYRVPYDG----PS--------------MHEFVAQPPEGFRALDLAKGLLE---L  396 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCS----SC--------------CSCEEEBCSTTCCHHHHHHHHHH---T
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhcCceeccCc----ce--------------eeEEeecCCCCCCHHHHHHHHHH---c
Confidence            555666667778889999999987776654332    11              01233445532224455565553   3


Q ss_pred             cccccccccccccccccccccCCCCCHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhhhc
Q 013079          379 GFMAVSLGYYETLMSCSGSSTSSELNAEEKALAGISAGLVRMSVGYLGTLDQRWSQFEKALSRMQDS  445 (450)
Q Consensus       379 g~i~vs~G~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~iRiS~g~~~~~~~~i~~l~~al~~~~~~  445 (450)
                      |.++   |    +...|                ...++.+-|++- ..++.++||.|.++|+++.++
T Consensus       397 G~~~---~----~~~~p----------------~~~~~~llv~vT-E~~tkedID~lv~aL~~i~~e  439 (471)
T d1wyub1         397 GFHP---P----TVYFP----------------LIVKEALMVEPT-ETEAKETLEAFAEAMGALLKK  439 (471)
T ss_dssp             TCCC---C----EESCS----------------TTSTTCEEECCC-TTSCHHHHHHHHHHHHHHHTS
T ss_pred             CCCC---C----cccCc----------------CCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHh
Confidence            3222   1    00011                112466778888 778888899999998887653