Citrus Sinensis ID: 013095

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MSGEGTGRDEAESRSQINQRSSISSPVKIYEMGGIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVSPLSF
cccccccccHHHHHHHHHcccccccccccccccccEEEccccccccHHHHccccHHHHHcccccccHHHHHHHHHHHHHHccccEEEEEEcccccEEEEccccEEEEEHHHHHHHHHHHHHHccEEEEEEEEEccccccccccHHHHHHHHHHcHHccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHHcHHHHcccccccc
cccccccccHHccccHHHHHHHccccccccccccccEEEccccccccHHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHccHEEEEEEEcccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccHEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEcccccccccHHHcccccccccccccccccEEHcHccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccc
msgegtgrdeaesrsqinqrssisspvkiyEMGGIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAavsidplffyipvvndnkkcirLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSlfvdlpavfplpqlvilsiiprmsgLKILSGMMLLKYSVLIQFVLRMIRIypwtlgklgEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKAclfnntgctrgsfdcydslgnyeflnefcptkpqnttilDFGIFQHALQsgivevpdfpqkfLHCFRWGlrnlscfgqnlqtssnAWENFFVILVTISGLVLMLFLIGNIQIYLqtkatrpkEMTLRMQEmnehmpiqkLSRSVQQQLKIYQRYiwrkpdtidvesslsILPKELRRNIKRELCLDLlknvsplsf
msgegtgrdeaesrsqinqrssisspvkiYEMGGIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRyiwrkpdtidvesslsilpkelrrnikrelcldllknvsplsf
MSGEGTGRDEAEsrsqinqrssissPVKIYEMGGIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVSPLSF
**************************VKIYEMGGIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK***************************QQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLK*******
*************************************************ALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVSPLSF
***********************SSPVKIYEMGGIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVSPLSF
*********************************GIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVSPLSF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGEGTGRDEAESRSQINQRSSISSPVKIYEMGGIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVSPLSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
O65717 716 Cyclic nucleotide-gated i yes no 0.850 0.533 0.459 5e-95
Q9LNJ0 711 Probable cyclic nucleotid no no 0.848 0.535 0.420 2e-82
Q9SKD7 706 Probable cyclic nucleotid no no 0.848 0.539 0.418 3e-82
Q9LD40 696 Putative cyclic nucleotid no no 0.850 0.548 0.405 4e-77
Q8GWD2 649 Probable cyclic nucleotid no no 0.830 0.574 0.358 4e-71
O82226 747 Probable cyclic nucleotid no no 0.817 0.491 0.383 5e-70
Q9M0A4 733 Putative cyclic nucleotid no no 0.819 0.502 0.377 2e-68
Q9SKD6 621 Cyclic nucleotide-gated i no no 0.797 0.576 0.342 1e-64
Q8RWS9 717 Probable cyclic nucleotid no no 0.815 0.510 0.365 2e-64
Q9S9N5 738 Putative cyclic nucleotid no no 0.848 0.516 0.35 3e-61
>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  348 bits (893), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 186/405 (45%), Positives = 253/405 (62%), Gaps = 23/405 (5%)

Query: 51  LVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGL 110
           L  WNKI V               + AVS+DPLFFY+P+++D KKC+ +D K+ +TA+ L
Sbjct: 92  LQRWNKIFV------------LACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVL 139

Query: 111 RSLFDFLYIFYITPQLLADLVA---SVNAKHEANNSLKSLMKFWLGSLFV-DLPAVFPLP 166
           RS  D  Y+ +I  Q     +A    V  +       + + K +L S F+ D+ AV PLP
Sbjct: 140 RSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLP 199

Query: 167 QLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIA 220
           Q+VIL IIP M G   L+   +LK+ V  Q++ R IRIYP       T G L E  WA A
Sbjct: 200 QMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGA 259

Query: 221 AFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCY-DSLGNYEFLN 279
           AFNL LY+LASHVFGA WY  +IER+T CWK+AC  NN  C      C  ++ G   FLN
Sbjct: 260 AFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLN 319

Query: 280 EFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNA 339
           E CP +  NTT+ DFGIF  ALQSG+VE  DFPQKF +CF WGL+NLS  GQNL+TS+  
Sbjct: 320 ESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYI 379

Query: 340 WENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQ 399
           WE  F + ++I+GLVL  FLIGN+Q YLQ+  TR +EM ++ ++  + M  + L  ++++
Sbjct: 380 WEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRK 439

Query: 400 QLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNV 444
           +++ Y++Y W++   +D E+ LS LPK+LRR+IKR LCL LL  V
Sbjct: 440 RIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRV 484
Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 Back     alignment and function description
>sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 Back     alignment and function description
>sp|Q8GWD2|CNG12_ARATH Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q9SKD6|CNG11_ARATH Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
15238657 716 cyclic nucleotide-gated ion channel 1 [A 0.850 0.533 0.459 3e-93
297796139 716 hypothetical protein ARALYDRAFT_918383 [ 0.850 0.533 0.456 9e-93
356551532 718 PREDICTED: cyclic nucleotide-gated ion c 0.850 0.532 0.450 1e-91
356516029 715 PREDICTED: cyclic nucleotide-gated ion c 0.850 0.534 0.448 1e-90
356509281 715 PREDICTED: cyclic nucleotide-gated ion c 0.850 0.534 0.445 7e-90
224135235 708 predicted protein [Populus trichocarpa] 0.848 0.538 0.449 2e-89
224118210 709 predicted protein [Populus trichocarpa] 0.848 0.537 0.450 3e-89
449497318 714 PREDICTED: cyclic nucleotide-gated ion c 0.850 0.535 0.455 1e-88
255545024 838 Cyclic nucleotide-gated ion channel, put 0.928 0.497 0.430 3e-88
449456377 713 PREDICTED: cyclic nucleotide-gated ion c 0.844 0.531 0.456 1e-87
>gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/405 (45%), Positives = 253/405 (62%), Gaps = 23/405 (5%)

Query: 51  LVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGL 110
           L  WNKI V               + AVS+DPLFFY+P+++D KKC+ +D K+ +TA+ L
Sbjct: 92  LQRWNKIFV------------LACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVL 139

Query: 111 RSLFDFLYIFYITPQLLADLVA---SVNAKHEANNSLKSLMKFWLGSLFV-DLPAVFPLP 166
           RS  D  Y+ +I  Q     +A    V  +       + + K +L S F+ D+ AV PLP
Sbjct: 140 RSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSHFIIDILAVLPLP 199

Query: 167 QLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIA 220
           Q+VIL IIP M G   L+   +LK+ V  Q++ R IRIYP       T G L E  WA A
Sbjct: 200 QMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGA 259

Query: 221 AFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCY-DSLGNYEFLN 279
           AFNL LY+LASHVFGA WY  +IER+T CWK+AC  NN  C      C  ++ G   FLN
Sbjct: 260 AFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLN 319

Query: 280 EFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNA 339
           E CP +  NTT+ DFGIF  ALQSG+VE  DFPQKF +CF WGL+NLS  GQNL+TS+  
Sbjct: 320 ESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYI 379

Query: 340 WENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQ 399
           WE  F + ++I+GLVL  FLIGN+Q YLQ+  TR +EM ++ ++  + M  + L  ++++
Sbjct: 380 WEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRK 439

Query: 400 QLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNV 444
           +++ Y++Y W++   +D E+ LS LPK+LRR+IKR LCL LL  V
Sbjct: 440 RIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRV 484

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449497318|ref|XP_004160370.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
TAIR|locus:2163776 716 CNGC1 "cyclic nucleotide gated 0.895 0.561 0.450 4.1e-88
TAIR|locus:2039084 706 CNGC3 "cyclic nucleotide gated 0.844 0.536 0.422 1.9e-76
TAIR|locus:2125206 696 CNGC13 "cyclic nucleotide-gate 0.850 0.548 0.405 8.6e-72
TAIR|locus:2039114 649 CNGC12 "cyclic nucleotide-gate 0.848 0.587 0.375 5.8e-66
TAIR|locus:2039099 621 CNGC11 "cyclic nucleotide-gate 0.853 0.616 0.367 1.1e-62
TAIR|locus:2062814 678 CNGC15 "cyclic nucleotide-gate 0.832 0.551 0.374 4.5e-59
TAIR|locus:2061401 747 CNGC6 "cyclic nucleotide-gated 0.643 0.386 0.396 4.3e-54
TAIR|locus:2046703 726 CNGC14 "cyclic nucleotide-gate 0.779 0.482 0.363 2.1e-52
TAIR|locus:2118836 733 CNGC9 "cyclic nucleotide gated 0.668 0.409 0.372 5.1e-51
TAIR|locus:2174448 717 CNGC5 "cyclic nucleotide gated 0.668 0.418 0.372 2.5e-49
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 188/417 (45%), Positives = 262/417 (62%)

Query:    42 SDKNCLLKALVNWNKIIVHLQG---NSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIR 98
             S K  + K + + +KI+   QG      + I +   + AVS+DPLFFY+P+++D KKC+ 
Sbjct:    69 SFKEAVSKGIGSTHKIL-DPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLG 127

Query:    99 LDYKLAVTATGLRSLFDFLYIFYITPQLLADLVAS---VNAKHEANNSLKSLMKFWLGSL 155
             +D K+ +TA+ LRS  D  Y+ +I  Q     +A    V  +       + + K +L S 
Sbjct:   128 IDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKRYLSSH 187

Query:   156 FV-DLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------T 208
             F+ D+ AV PLPQ+VIL IIP M G   L+   +LK+ V  Q++ R IRIYP       T
Sbjct:   188 FIIDILAVLPLPQMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRT 247

Query:   209 LGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDC 268
              G L E  WA AAFNL LY+LASHVFGA WY  +IER+T CWK+AC  NN  C      C
Sbjct:   248 SGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYC 307

Query:   269 Y-DSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLS 327
               ++ G   FLNE CP +  NTT+ DFGIF  ALQSG+VE  DFPQKF +CF WGL+NLS
Sbjct:   308 DPETAGGNAFLNESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLS 367

Query:   328 CFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEH 387
               GQNL+TS+  WE  F + ++I+GLVL  FLIGN+Q YLQ+  TR +EM ++ ++  + 
Sbjct:   368 SLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQW 427

Query:   388 MPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNV 444
             M  + L  +++++++ Y++Y W++   +D E+ LS LPK+LRR+IKR LCL LL  V
Sbjct:   428 MSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRV 484
GO:0005216 "ion channel activity" evidence=IEA
GO:0005261 "cation channel activity" evidence=ISS
GO:0005516 "calmodulin binding" evidence=ISS;TAS;IPI
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006811 "ion transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005242 "inward rectifier potassium channel activity" evidence=IGI
GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IGI
GO:0006813 "potassium ion transport" evidence=IGI
GO:0006816 "calcium ion transport" evidence=IGI
TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039114 CNGC12 "cyclic nucleotide-gated channel 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CNGC1
CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1); calmodulin binding / cation channel/ cyclic nucleotide binding / intracellular cyclic nucleotide activated cation channel/ inward rectifier potassium channel; member of Cyclic nucleotide gated channel family ; Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+) (716 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G46330.1-P
FLS2 (FLAGELLIN-SENSITIVE 2); ATP binding / kinase/ protein binding / protein serine/threonine [...] (1173 aa)
     •  0.800
CAM3
CAM3 (CALMODULIN 3); calcium ion binding; encodes a calmodulin ; Calmodulin mediates the contro [...] (149 aa)
      • 0.659
CAM5
CAM5 (CALMODULIN 5); calcium ion binding; encodes a calmodulin that has higher affinity to kine [...] (181 aa)
      • 0.659
KEA5
KEA5; potassium ion transmembrane transporter/ potassium-hydrogen antiporter; member of Putativ [...] (568 aa)
      • 0.599
AT3G17720
pyridoxal-dependent decarboxylase family protein; pyridoxal-dependent decarboxylase family prot [...] (194 aa)
      • 0.508
HKT1
HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transmembrane transporter; encodes a sodium t [...] (506 aa)
      • 0.504
ATKCO1
ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel; [...] (363 aa)
      • 0.466
KCO3
KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3); calcium ion binding / outward rectifier [...] (260 aa)
      • 0.463
AT1G20860
phosphate transporter family protein; phosphate transporter family protein; FUNCTIONS IN- phosp [...] (534 aa)
      • 0.438
ATKT1
ATKT1 (POTASSIUM TRANSPORTER 1); potassium ion transmembrane transporter; Encodes a high affini [...] (712 aa)
      • 0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0500 536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0499 815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.57
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.46
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.23
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.19
KOG1419 654 consensus Voltage-gated K+ channel KCNQ [Inorganic 99.01
KOG4390 632 consensus Voltage-gated A-type K+ channel KCND [In 98.59
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.5
PRK10537393 voltage-gated potassium channel; Provisional 98.41
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 98.12
PF01007 336 IRK: Inward rectifier potassium channel; InterPro: 97.84
KOG1418 433 consensus Tandem pore domain K+ channel [Inorganic 97.77
KOG4404 350 consensus Tandem pore domain K+ channel TASK3/THIK 96.43
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 96.13
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 95.97
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 95.85
KOG3827 400 consensus Inward rectifier K+ channel [Inorganic i 94.73
PF08006 181 DUF1700: Protein of unknown function (DUF1700); In 92.28
COG4709 195 Predicted membrane protein [Function unknown] 91.72
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 90.04
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 87.58
PF14377108 DUF4414: Domain of unknown function (DUF4414) 86.14
PLN03223 1634 Polycystin cation channel protein; Provisional 85.87
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.2e-75  Score=615.44  Aligned_cols=358  Identities=33%  Similarity=0.557  Sum_probs=307.1

Q ss_pred             hhcccccCccchhhhhcceEEEeecCCCCccchhhhhhhheeecceeeEEEeecCCcceEEecCcccchhhhHHHHHHHH
Q 013095           38 LLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFL  117 (449)
Q Consensus        38 ~~~~~vi~P~s~~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~Pl~fy~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~  117 (449)
                      .+...++||.|+|++.||.++++            +|+++++++|++||++.......|  .|......++++|.++|++
T Consensus        64 ~~~~~Ii~P~s~~~~~W~~~~Ll------------~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~f  129 (727)
T KOG0498|consen   64 KSRKWILDPYSPFYRVWNKFFLL------------LVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIF  129 (727)
T ss_pred             cccceeECCCChHHHHHHHHHHH------------HHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHH
Confidence            44467999999999999999999            999999999999999999888888  7888888999999999999


Q ss_pred             HHHHHhhhcccceeccccCCC-ceecChHHHHHHhhhhhc-cccccccccchhhhhhhccCCchhhHHhHhhHHHHHHHH
Q 013095          118 YIFYITPQLLADLVASVNAKH-EANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLI  195 (449)
Q Consensus       118 f~~DI~l~F~t~y~d~~~~~g-~~V~d~~~Ia~~Ylk~~F-~Dlis~lP~~~i~~~~~~~~~~~~~~l~~~~llrl~rl~  195 (449)
                      |++||+++|+|||+++   ++ ++|.||++||+||+|+|| +|++|++|+++++.|..+..  ...... ...+..+.++
T Consensus       130 flvdIvL~Frtayv~~---~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~--~~~~~~-~~~l~~il~~  203 (727)
T KOG0498|consen  130 FLVDIVLNFRTAYVDP---SSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGS--TSLALE-STILVGILLL  203 (727)
T ss_pred             HHHHHHHhheEEEECC---CCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecc--cchhhh-HHHHHHHHHH
Confidence            9999999999999998   44 599999999999999999 99999999999988765411  111111 1122222334


Q ss_pred             HHHHHhhhhhhc------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhhcCCCCCCccceecc
Q 013095          196 QFVLRMIRIYPW------TLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCY  269 (449)
Q Consensus       196 r~l~Rl~r~~~l------~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~~~~~c~~~~~~~~  269 (449)
                      +|++|++|++++      ..++..+++|.+++++|+++++++||+||+||++|.++..+||..+                
T Consensus       204 ~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~----------------  267 (727)
T KOG0498|consen  204 QRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA----------------  267 (727)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc----------------
Confidence            446677776665      5677789999998899999999999999999999999888787543                


Q ss_pred             CCCCCcccccccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHH
Q 013095          270 DSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVT  349 (449)
Q Consensus       270 ~~~~~~sW~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~m  349 (449)
                            +|+...+.-.+..+..|+||+|.            ++.+|++|+||+++|||||||||++|+|..|++|+|++|
T Consensus       268 ------tw~~~l~~~~~~~~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~m  329 (727)
T KOG0498|consen  268 ------TWLGSLGRLLSCYNLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIM  329 (727)
T ss_pred             ------ccccccccccccCcccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHH
Confidence                  34332110000112336677654            455999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhCcHHHH
Q 013095          350 ISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELR  429 (449)
Q Consensus       350 i~G~~~fa~iig~i~~il~~~~~~~~~~~~~l~~i~~ym~~~~lp~~L~~rV~~y~~y~~~~~~~~~e~~il~~Lp~~Lr  429 (449)
                      ++|.++||++||||+++++++..+.++|+.|+.++++||+.|+||++||+||++|++|+|+.++|+||+++|++||+.||
T Consensus       330 i~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR  409 (727)
T KOG0498|consen  330 LFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLR  409 (727)
T ss_pred             HHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHccccCCCCC
Q 013095          430 RNIKRELCLDLLKNVSPLSF  449 (449)
Q Consensus       430 ~eI~~~~~~~~l~~vplF~n  449 (449)
                      +||.+|+|.++|++||+|++
T Consensus       410 ~dI~~hL~~~lv~~vpLF~~  429 (727)
T KOG0498|consen  410 RDIKRHLCLDLVRKVPLFAG  429 (727)
T ss_pred             HHHHHHHhHHHHhhCchhhc
Confidence            99999999999999999985

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) Back     alignment and domain information
>COG4709 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF14377 DUF4414: Domain of unknown function (DUF4414) Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
2ptm_A 198 Hyperpolarization-activated (IH) channel; ION chan 4e-11
3ukn_A 212 Novel protein similar to vertebrate potassium VOL 1e-10
3bpz_A 202 Potassium/sodium hyperpolarization-activated cycli 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 375 KEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKR 434
           ++   +++++ E+M  +KL   ++ ++  Y  Y +R     D       + + +R+++  
Sbjct: 8   RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVAN 66

Query: 435 ELCLDLLKNVS 445
             C DL+ +V 
Sbjct: 67  YNCRDLVASVP 77
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.88
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.78
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.72
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.68
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.66
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.61
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.57
3ukn_A 212 Novel protein similar to vertebrate potassium VOL 99.51
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.5
2ptm_A 198 Hyperpolarization-activated (IH) channel; ION chan 99.48
3bpz_A 202 Potassium/sodium hyperpolarization-activated cycli 99.46
2q67_A114 Potassium channel protein; inverted teepee, helix 99.43
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.34
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.26
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.24
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.23
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.06
1xl4_A301 Inward rectifier potassium channel; integral membr 99.05
1p7b_A 333 Integral membrane channel and cytosolic domains; t 99.02
3um7_A309 Potassium channel subfamily K member 4; potassium 99.0
2qks_A 321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.87
3um7_A309 Potassium channel subfamily K member 4; potassium 98.77
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.71
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.66
3sya_A 340 G protein-activated inward rectifier potassium CH; 98.65
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.57
3spc_A 343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.52
1lnq_A 336 MTHK channels, potassium channel related protein; 98.49
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 97.74
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 96.34
1ors_C132 Potassium channel; voltage-dependent, voltage sens 95.88
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
Probab=99.88  E-value=5.4e-22  Score=186.27  Aligned_cols=179  Identities=12%  Similarity=0.105  Sum_probs=121.1

Q ss_pred             ccchhhhHHHHHHHHHHHHHhhhcccceeccccCCCceecChHHHHHHhhhhhc-cccccccccchhhhhhhccCCchhh
Q 013095          103 LAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIPRMSGLK  181 (449)
Q Consensus       103 ~~~~~~~~~~~~D~~f~~DI~l~F~t~y~d~~~~~g~~V~d~~~Ia~~Ylk~~F-~Dlis~lP~~~i~~~~~~~~~~~~~  181 (449)
                      ....+..+|.+++++|.+|++++|.++.      +          +++|+|+ + +|++|++|++.....    .. +..
T Consensus        37 ~~~~l~~~d~~~~~iF~~e~~lr~~~~~------~----------~~~y~~~-~iiDllailP~~~~~~~----~~-~~~   94 (223)
T 1orq_C           37 YLVRLYLVDLILVIILWADYAYRAYKSG------D----------PAGYVKK-TLYEIPALVPAGLLALI----EG-HLA   94 (223)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHTTS------C----------HHHHHHH-HHHHCTTHHHHHHHHHH----HH-HHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccc------c----------HHHHHHH-hHHHHHHHHHHHHHHHH----hc-chh
Confidence            3457889999999999999999999874      1          3799998 9 999999998765321    00 000


Q ss_pred             HHhHhhHHHHHHHHHHHHHhhhhhhcccc---chhhhhH-HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhhhcC
Q 013095          182 ILSGMMLLKYSVLIQFVLRMIRIYPWTLG---KLGEATW-AIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFN  257 (449)
Q Consensus       182 ~l~~~~llrl~rl~r~l~Rl~r~~~l~~~---~~~~~~~-~~~~~~l~~~~l~~H~~aC~wy~i~~~~~~~~~~~ac~~~  257 (449)
                      .....|.+|++|++    |++|..+...+   .+.+... .+....++..++..|+.||++|.+.-              
T Consensus        95 ~~~~lr~lRllRll----R~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~--------------  156 (223)
T 1orq_C           95 GLGLFRLVRLLRFL----RILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY--------------  156 (223)
T ss_dssp             TTTCHHHHHHHHHH----HHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence            01122333333333    33333331011   1111100 11222233455677888888876420              


Q ss_pred             CCCCCccceeccCCCCCcccccccCCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHhhhhcccccCCCccCC
Q 013095          258 NTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSS  337 (449)
Q Consensus       258 ~~~c~~~~~~~~~~~~~~sW~~~~~~~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmttvGyGDi~p~  337 (449)
                                    ++                                  +++...+|..|+||+++|||||||||++|.
T Consensus       157 --------------~~----------------------------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~  188 (223)
T 1orq_C          157 --------------PD----------------------------------PNSSIKSVFDALWWAVVTATTVGYGDVVPA  188 (223)
T ss_dssp             --------------SS----------------------------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCC
T ss_pred             --------------CC----------------------------------cCCCcCcchhHHHhHHhHHhccCCCCCCCC
Confidence                          00                                  111234799999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013095          338 NAWENFFVILVTISGLVLMLFLIGNIQIYLQT  369 (449)
Q Consensus       338 ~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~  369 (449)
                      |..|++++++.|++|.+++|+.+|.+++.+++
T Consensus       189 t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~  220 (223)
T 1orq_C          189 TPIGKVIGIAVMLTGISALTLLIGTVSNMFQK  220 (223)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998865
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 449
d1q3ea_ 193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 0.001
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 375 KEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKR 434
           ++   + +++ ++M   KL    +Q++  Y  + ++     D +S L  L   LR  I  
Sbjct: 5   RQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGK-MFDEDSILGELNGPLREEIVN 63

Query: 435 ELCLDLLKN 443
             C  L+ +
Sbjct: 64  FNCRKLVAS 72

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.45
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.36
d1q3ea_ 193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.36
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.29
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 99.04
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 96.84
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 95.36
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.45  E-value=9.2e-14  Score=112.05  Aligned_cols=57  Identities=9%  Similarity=0.348  Sum_probs=53.5

Q ss_pred             HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013095          314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK  370 (449)
Q Consensus       314 ~Yl~SlYwa~~TmttvGyGDi~p~~~~E~i~~i~~mi~G~~~fa~iig~i~~il~~~  370 (449)
                      .|..|+||+++|||||||||++|.+..+++++++.|++|.+++|++++.+++.+.+.
T Consensus        40 s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~   96 (103)
T d1r3jc_          40 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGR   96 (103)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999999999998877543
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure