Citrus Sinensis ID: 013096

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWGKQPYQNWHKL
Secondary Structure (PSIPRED)
cccEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mgvtiespfgnrvHFLYIFIFLSCFFsifllpsksssssssslfdhsnsssfvpfQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEhekqgqrqdilSDTFWLMTFFESAALIGGQVLANWLVgidvkkgvvpssTASVFLSILGIICVsrgwtenpkmafddyrTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWaptlvadgrevhlGLIFPsllgarmlgstvfpwlisgpssfrteDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLArlrtmyvpnelrggmislsLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKrwgkqpyqnwhkl
Flexible Loop (DISEMBL)
mgvtiespfgnRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWgkqpyqnwhkl
Low Complexity Region (SEG)
MGVTIESPFGNRVHflyififlscffsifllpsksssssssslfdhsnsssfVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVafaalglfiaagCMHVLKRWGKQPYQNWHKL
Disordered region (IsUnstruct)
*******PFGNRVHFLYIFIFLSCFFSIFLL********************FVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWGKQPYQN****
Disordered Region (DISOPRED)
*GVTIESPFGNRVHFLYIFIFLSCFFSIFL***********************PFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVS*******************TYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVL**************
Disordered Region (DISEMBL)
MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPS****************SSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWGKQPYQNWHKL
Disordered Region (DISPRO)
*GVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSS**********NSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWGK*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWGKQPYQNWHKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	449	2.2.26 [Sep-21-2011]
Q921Y4	450	Major facilitator superfa	yes	no	0.739	0.737	0.241	2e-12
Q6N075	450	Major facilitator superfa	yes	no	0.775	0.773	0.241	2e-10
Q0VC03	450	Major facilitator superfa	yes	no	0.739	0.737	0.241	2e-10
Q5R542	450	Major facilitator superfa	yes	no	0.739	0.737	0.238	3e-09
Q28E13	452	Major facilitator superfa	yes	no	0.752	0.747	0.242	4e-09
Q08B29	451	Major facilitator superfa	N/A	no	0.737	0.733	0.240	7e-08
Q1KKV8	480	Major facilitator superfa	N/A	no	0.750	0.702	0.217	9e-07
Q6DG19	481	Major facilitator superfa	yes	no	0.732	0.683	0.217	1e-06

>sp|Q921Y4|MFSD5_MOUSE Major facilitator superfamily domain-containing protein 5 OS=Mus musculus GN=Mfsd5 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 155/356 (43%), Gaps = 24/356 (6%)

Query: 48  NSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGS 107
           ++ SF+ FQ +F  ++ LA   + L + +      +Y   + Q+ +L   G ++ +  G 
Sbjct: 34  SNPSFLQFQLDFYQVYFLALAADWLQAPYLYKLYQHYHFLEGQIAILYVCGLASTVLFGL 93

Query: 108 FLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVA 167
               + D +G+KK C++F + +    + K    +  + V      L++++    FE W  
Sbjct: 94  VASSLVDWLGRKKSCVLFSLTYSLCCITKLSQDYFVLLVGRALGGLSTALLFSAFEAWYI 153

Query: 168 IEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID-----VKKGVVPSSTASV 222
            EH    +R D  ++  W+   F  AA     +     V  +     +  G V    A++
Sbjct: 154 HEHV---ERHDFPAE--WIPATFARAAFWNHVLAVAAGVAAEAVASWIGLGPVAPFVAAI 208

Query: 223 FLSILGIICVSRGWTEN--PKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWI 280
            L  L      R W EN   + AF          +  D+R+ LL + QA  +  I +F  
Sbjct: 209 PLLALTGALALRNWGENYDRQRAFSKTCAGGLRCLLSDRRVLLLGVIQALFESVIFIFVF 268

Query: 281 LWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVF 340
           LW P L  D     LG++F S + A +LGS+++   I+    +  +   L +  VL  VF
Sbjct: 269 LWTPVL--DPHGAPLGIVFSSFMAASLLGSSLY--RIATSKRYHLQPMHLLSLAVLIVVF 324

Query: 341 SIIAYDY-----QE--IGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMIS 389
           S+    +     QE  +   +A   +  AC GL  PS++ LR   +P   + G+++
Sbjct: 325 SLFMLTFSTSPGQENPVESFIAFLLIELAC-GLYFPSMSFLRRKVIPETEQAGVLN 379

Mus musculus (taxid: 10090)

>sp|Q6N075|MFSD5_HUMAN Major facilitator superfamily domain-containing protein 5 OS=Homo sapiens GN=MFSD5 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 24/372 (6%)

Query: 48  NSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGS 107
           ++ SF+ FQ +F  ++ LA   + L + +      +Y   + Q+ +L   G ++ +  G 
Sbjct: 34  SNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGL 93

Query: 108 FLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVA 167
               + D +G+K  C++F + +    + K    +  + V      L++++    FE W  
Sbjct: 94  VASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYI 153

Query: 168 IEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID-----VKKGVVPSSTASV 222
            EH    +R D  ++  W+   F  AA     +     V  +     +  G V    A++
Sbjct: 154 HEHV---ERHDFPAE--WIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAI 208

Query: 223 FLSILGIICVSRGWTEN--PKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWI 280
            L  L      R W EN   + AF          +  D+R+ LL   QA  +  I +F  
Sbjct: 209 PLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVF 268

Query: 281 LWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVF 340
           LW P L  D     LG+IF S + A +LGS+++   I+    +  +   L +  VL  VF
Sbjct: 269 LWTPVL--DPHGAPLGIIFSSFMAASLLGSSLY--RIATSKRYHLQPMHLLSLAVLIVVF 324

Query: 341 SIIAYDY-----QEIGI--LVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLA 393
           S+    +     QE  +   +A   +  AC GL  PS++ LR   +P   + G+++    
Sbjct: 325 SLFMLTFSTSPGQESPVESFIAFLLIELAC-GLYFPSMSFLRRKVIPETEQAGVLNWFRV 383

Query: 394 PANAAILLFLLL 405
           P ++   L LL+
Sbjct: 384 PLHSLACLGLLV 395

Homo sapiens (taxid: 9606)

>sp|Q0VC03|MFSD5_BOVIN Major facilitator superfamily domain-containing protein 5 OS=Bos taurus GN=MFSD5 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 152/356 (42%), Gaps = 24/356 (6%)

Query: 48  NSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGS 107
           ++ SF+ FQ +F  ++ LA   + L + +      +Y   + Q+ +L   G ++ +  G 
Sbjct: 34  SNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYHFLEAQIAILYVCGLASTVLFGL 93

Query: 108 FLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVA 167
               + D +G+KK C++F + +    + K    +  + V      L++++    FE W  
Sbjct: 94  VASSLVDWLGRKKSCVLFSLTYSLCCLTKLSRDYFVLLVGRALGGLSTALLFSAFEAWYI 153

Query: 168 IEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKK-----GVVPSSTASV 222
            EH    +R D  ++  W+   F  AA     +     V  +        G V    A++
Sbjct: 154 HEHL---ERHDFPTE--WIPATFARAAFWNHVLAVAAGVAAEAVACWMGLGPVAPFVAAI 208

Query: 223 FLSILGIICVSRGWTEN--PKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWI 280
            L  L        W EN   + AF          +  D+R+ LL   QA  +  I +F  
Sbjct: 209 PLLALAGALALHNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVF 268

Query: 281 LWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVF 340
           LW P L  D     LG+IF S + A +LGS+++   I+    +  +   L +  VL  VF
Sbjct: 269 LWTPVL--DPHGAPLGIIFSSFMAASLLGSSLY--RIATSKRYHLQPMHLLSLAVLIVVF 324

Query: 341 SIIAYDY-----QEIGI--LVALFCLFHACVGLILPSLARLRTMYVPNELRGGMIS 389
           S+    +     QE  +   +A   +  AC GL  PS++ LR   +P   + G+++
Sbjct: 325 SLFMLTFSTSPGQESPVESFIAFLLIELAC-GLYFPSMSFLRRKVIPETEQAGVLN 379

Bos taurus (taxid: 9913)

>sp|Q5R542|MFSD5_PONAB Major facilitator superfamily domain-containing protein 5 OS=Pongo abelii GN=MFSD5 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 151/356 (42%), Gaps = 24/356 (6%)

Query: 48  NSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGS 107
           ++ SF+  Q +F  ++ LA   + L + +      +Y   + Q+ +L   G ++ +  G 
Sbjct: 34  SNPSFLRSQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGL 93

Query: 108 FLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVA 167
               + D +G+K  C++F + +    + K    +  + V      L++++    FE W  
Sbjct: 94  VASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYI 153

Query: 168 IEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID-----VKKGVVPSSTASV 222
            EH    +R D    T W+   F  AA     +     V  +     +  G V    A++
Sbjct: 154 HEHV---ERHDF--PTEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAI 208

Query: 223 FLSILGIICVSRGWTEN--PKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWI 280
            L  L      R W EN   + AF          +  D+R+ LL   QA  +  I +F  
Sbjct: 209 PLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVF 268

Query: 281 LWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVF 340
           LW P L  D     LG++F S + A +LGS+++   I+    +  +   L +  VL  VF
Sbjct: 269 LWTPVL--DPHGAPLGIVFSSFMAASLLGSSLY--RIATSKRYHLQPMHLLSLAVLIVVF 324

Query: 341 SIIAYDY-----QEIGI--LVALFCLFHACVGLILPSLARLRTMYVPNELRGGMIS 389
           S+    +     QE  +   +A   +  AC GL  PS++ LR   +P   + G+++
Sbjct: 325 SLFMLTFSTSPGQESPVESFIAFLLIELAC-GLYFPSMSFLRRKVIPETEQAGVLN 379

Pongo abelii (taxid: 9601)

>sp|Q28E13|MFSD5_XENTR Major facilitator superfamily domain-containing protein 5 OS=Xenopus tropicalis GN=mfsd5 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 161/375 (42%), Gaps = 37/375 (9%)

Query: 33  SKSSSSSSSSLFDHSNSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMM 92
           SK S+SS++       + +F  FQ +F   +  A   + L   +      +Y   + Q+ 
Sbjct: 26  SKPSTSSNAV-----GNPAFRQFQYDFYRTYFPALAADWLQGPYLYKLYQHYHFLEGQIA 80

Query: 93  LLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLS 152
           ++   GF A++F G     ++  +G++K C++F +L     + K    +  +    +   
Sbjct: 81  IIYVCGFGASVFAGLVSAPLTSRLGRRKSCILFCLLLSASYLCKLSQEYFVLITGRVLGG 140

Query: 153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWL-MTFFESAALIGGQVLANWLVGIDVK 211
            +SS+   +FE W   EH +Q    D  ++  WL  TF  +AA  GG  +A  ++     
Sbjct: 141 FSSSLLFSSFEAWYTHEHAEQ---HDFPAE--WLPHTFTRAAAWNGGIAIAAGVIANACA 195

Query: 212 K--GVVPSSTA--SVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLA 267
           +  G+ P+S +  +V L +L +  V R W EN        +TS F  + GD    LL   
Sbjct: 196 EWLGLGPASPSVLAVPLLVLSVALVIREWDENYG------QTSSFRRVCGDGLRCLLRDR 249

Query: 268 --------QACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISG 319
                   QA  +  + +F  LW P L  D     LG+ F S + A   GS+++    S 
Sbjct: 250 RVLLLGTIQALFESVVYIFIFLWTPVL--DPHNTPLGIAFSSFMAASAAGSSLYRLATSK 307

Query: 320 PSSFRTEDCLLYAFVVLGF-----VFSIIAYDYQEIGILVALFCLFHACVGLILPSLARL 374
               +    L  + +++ F      FS           L+A   +  AC GL  P++  L
Sbjct: 308 KYHLQPMHVLCLSILMVFFSLFMLTFSTAPGQEHPTESLLAFLLIELAC-GLYFPAMGFL 366

Query: 375 RTMYVPNELRGGMIS 389
           R   +P + + G+++
Sbjct: 367 RCRLIPEKEQIGVLN 381

Xenopus tropicalis (taxid: 8364)

>sp|Q08B29|MFSD5_XENLA Major facilitator superfamily domain-containing protein 5 OS=Xenopus laevis GN=mfsd5 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 159/382 (41%), Gaps = 51/382 (13%)

Query: 33  SKSSSSSSSSLFDHSNSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMM 92
           SK S+SS++       + +F  FQ +F   +  A   + L   +      +Y   + Q+ 
Sbjct: 26  SKPSASSNAL-----GNPAFRQFQYDFYRTYFPALAADWLQGPYLYKLYQHYHFLEGQIA 80

Query: 93  LLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLS 152
           ++   GF A++F G     ++  +G++K C++F +L     + K    +  +    +   
Sbjct: 81  IIYVCGFGASVFAGLVSVPLTSRLGRRKSCILFCLLLSASYLCKLSQEYFVLMTGRVLGG 140

Query: 153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWL-MTFFESAALIGG---------QVLA 202
            +SS+    FE W   EH +Q    D  ++  WL  TF  +AA  GG          V A
Sbjct: 141 FSSSLLFSCFEAWYTHEHAEQ---HDFPAE--WLPHTFTRAAAWNGGIAIAAGITANVCA 195

Query: 203 NWLVGIDVKKGVVPSSTASVFLSILGIICVS--RGWTENPKMAFDDYRTSFFTYIFGDKR 260
            WL       G+ P+S + + + +L +  V   R W EN        +TS F  + GD  
Sbjct: 196 EWL-------GLGPASPSVLAVPLLVLSVVLVIREWDENYG------QTSSFRRVCGDGL 242

Query: 261 IWLLVLA--------QACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTV 312
             LL           QA  +  + +F  LW P L  D     LG+ F S + A  +GS++
Sbjct: 243 RCLLRDRRVLLLGTIQALFESVVYIFIFLWTPVL--DPHNAPLGIAFSSFMAASAVGSSL 300

Query: 313 FPWLISGPSSFRTEDCLLYAFVVLGF-----VFSIIAYDYQEIGILVALFCLFHACVGLI 367
           +    S     +    L  + +++ F      FS           L+A   +  AC GL 
Sbjct: 301 YHLATSKKYHLQPMHVLCLSILMVFFSLFMLTFSTAPGQEHPTESLLAFLLIELAC-GLY 359

Query: 368 LPSLARLRTMYVPNELRGGMIS 389
            P++  LR   +P + + G+++
Sbjct: 360 FPAMRFLRRRLIPEKEQTGVLN 381

Xenopus laevis (taxid: 8355)

>sp|Q1KKV8|MFSD5_TAKRU Major facilitator superfamily domain-containing protein 5 OS=Takifugu rubripes GN=mfsd5 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 145/373 (38%), Gaps = 36/373 (9%)

Query: 49  SSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSF 108
           + +F  FQ  FL  + LA   + L   +      +Y   + Q+ +L   G ++ +    F
Sbjct: 36  NPAFRRFQATFLRAYLLALWADWLQGPYLYKLYRHYSFLESQIAILYVCGLASCVLFAPF 95

Query: 109 LGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAI 168
            G +S  +G++ +C+ F + +    + K    +  + V  I   L++S+ +  FE+W   
Sbjct: 96  SGWLSQALGRRHMCIFFCLSYATCCLTKLSRDYFVLIVGRILGGLSTSLLTTTFESWYVH 155

Query: 169 EH-EKQGQRQDILSDTFWLMTFFESAALIGGQVLAN------------------------ 203
            H E     ++ +  TF     +     +G  ++AN                        
Sbjct: 156 HHVEIHDFPKEWIPTTFTKAATWNHGLAVGAGLVANLLAEWLHLGPVAPFLLAVPFLACC 215

Query: 204 -WLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTE-NPKMAFDDYRTSFFTYIFGDKRI 261
            W V  D  K     S   +    L +  ++ G T  + +  F    +     +  DKR+
Sbjct: 216 AWFVLTDWAKEEAEKSPEGI-KQTLPLGTLNGGVTHLSARARFSRSCSDGLRCMLSDKRV 274

Query: 262 WLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPS 321
            LL   QA  +  + +F  LW P L   G    LG++F   + A M+GS +F    S   
Sbjct: 275 MLLGGVQALFESVLYIFIFLWTPVLDPHGSP--LGIVFSCFMAASMVGSLLFRVATSTRY 332

Query: 322 SFRTEDCLLYAFVVLGF-----VFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRT 376
             +    L  A ++  F      FS +    +     +A   L  AC GL  P+L  L+ 
Sbjct: 333 HLQPGHVLCVAVLMAFFSFFMLTFSTVPGQPRPHESFLAFLLLELAC-GLYFPALNFLQG 391

Query: 377 MYVPNELRGGMIS 389
             +P E R  +++
Sbjct: 392 RIIPEEKRASVLA 404

Takifugu rubripes (taxid: 31033)

>sp|Q6DG19|MFSD5_DANRE Major facilitator superfamily domain-containing protein 5 OS=Danio rerio GN=mfsd5 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 153/381 (40%), Gaps = 52/381 (13%)

Query: 49  SSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSF 108
           + +F  FQ+ FL  + LA   + L   +      +Y   + Q+ +L   G ++ +     
Sbjct: 38  NPAFQRFQKLFLKAYLLALWADWLQGPYLYKLYRHYNFLESQIAILYVCGLASCVLFAPV 97

Query: 109 LGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAI 168
            G +   +G+++ CL+F + +    + K    +  + +  +   L++S+ +  FE W   
Sbjct: 98  AGWLPQFLGRRQTCLLFCLAYSVCCITKLSQDYFMLILGRVLGGLSTSLLTTTFEAWYVH 157

Query: 169 EH-EKQGQRQDILSDTFWLMTFFESAALIGGQVLAN------------------------ 203
            H +     ++ +  TF  +  +     +G  ++AN                        
Sbjct: 158 GHVDIHDFPKEWIPVTFGKVANWNYGLAVGAGLVANLFAEWLGLGPVAPFLLAIPSLAAC 217

Query: 204 -WLV-----GIDVKKGVVPSSTASVFLSI----LGIICVSRGWTENPKMAFDDYRTSFFT 253
            W V       D ++G+     A +  S+    L +   +R W    +   D  R     
Sbjct: 218 AWFVLSEWGQEDKQEGMNGDKNAPLLNSLNTPKLQLSARARFW----RSCVDGLRC---- 269

Query: 254 YIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVF 313
            +  D+R+ LL   QA  +  + +F  LW P L  D     LG++F SL+ A M GST+F
Sbjct: 270 -LLSDRRVMLLGGVQALFESVLYIFVFLWTPVL--DPHGPPLGIVFSSLMAATMAGSTLF 326

Query: 314 PWLISGPSSFRTEDCLLYAFVVLGF-----VFSIIAYDYQEIGILVALFCLFHACVGLIL 368
               S P   +    L  A ++  F      FS +    +    L+A   L  AC GL  
Sbjct: 327 RLATSAPYRLQPGHLLCLAILLAFFSFFMLTFSTVPGQPRPRESLLAFLLLELAC-GLYF 385

Query: 369 PSLARLRTMYVPNELRGGMIS 389
           P+++ L+   VP E R  +++
Sbjct: 386 PAVSFLQGRVVPVERRAAVLA 406

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
225438942	448	PREDICTED: major facilitator superfamily	0.995	0.997	0.693	1e-178
449448260	452	PREDICTED: major facilitator superfamily	0.997	0.991	0.645	1e-171
357453663	447	Major facilitator superfamily domain-con	0.991	0.995	0.643	1e-167
356495500	449	PREDICTED: major facilitator superfamily	0.995	0.995	0.625	1e-166
356540641	450	PREDICTED: major facilitator superfamily	0.995	0.993	0.631	1e-165
147781852	920	hypothetical protein VITISV_036093 [Viti	0.848	0.414	0.719	1e-162
224074231	451	predicted protein [Populus trichocarpa]	0.991	0.986	0.629	1e-157
297821551	449	hypothetical protein ARALYDRAFT_481182 [	0.997	0.997	0.617	1e-151
30681953	449	major facilitator protein [Arabidopsis t	0.997	0.997	0.615	1e-149
255584896	424	conserved hypothetical protein [Ricinus	0.897	0.950	0.646	1e-147

>gi|225438942|ref|XP_002279446.1| PREDICTED: major facilitator superfamily domain-containing protein 5 [Vitis vinifera] gi|296087347|emb|CBI33721.3| unnamed protein product [Vitis vinifera]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/450 (69%), Positives = 366/450 (81%), Gaps = 3/450 (0%)

Query: 1   MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFL 60
           MG+ IES        LYIFIFL+ F SIFLLP+ S+ + +   FDH  S SF+ FQRNFL
Sbjct: 1   MGIVIESSVWEPKPSLYIFIFLASFLSIFLLPNFSNRTLAP--FDHGTSPSFLRFQRNFL 58

Query: 61  LLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK 120
           L+FSLAS MEG+ SVFGE+EL YYGV++EQM++ LC G   A F  +FLGM+ DLIGQKK
Sbjct: 59  LIFSLASGMEGVSSVFGEFELAYYGVSREQMVVSLCVGCLVAFFFSAFLGMLCDLIGQKK 118

Query: 121 VCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDIL 180
            CL F +LHL VG+W+ I+  PSVW+ANICLSLA+SIFSF+FETW+ +EH+K G R+DIL
Sbjct: 119 ACLSFCVLHLSVGIWRRISLQPSVWLANICLSLATSIFSFSFETWMTVEHDKLGYRRDIL 178

Query: 181 SDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP 240
            DTFWLMTFFESA+ IG Q+LANWL+G DVKK VV  S ASV L+++ II +++ W E P
Sbjct: 179 IDTFWLMTFFESASFIGSQLLANWLLGSDVKKSVVAPSIASVILAMITIIYITKCWAETP 238

Query: 241 KMA-FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIF 299
           +MA F DY+ SF+T+IF DKRIWLL  AQAC+ FSIA+FWILWAPTLVADGREVHLGLIF
Sbjct: 239 QMAVFKDYKMSFYTHIFCDKRIWLLACAQACIHFSIAVFWILWAPTLVADGREVHLGLIF 298

Query: 300 PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL 359
           P LLGARMLGST  PWL S PSS RTED L+YAF+++G V  ++AYDYQEIG+LV LFCL
Sbjct: 299 PCLLGARMLGSTALPWLTSVPSSLRTEDYLVYAFIIMGLVLYVVAYDYQEIGVLVTLFCL 358

Query: 360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVA 419
           FHAC GLILPSLARLRTMYVPNELRGGMISLSLAP+NAAIL F++  G+YRNI NA + A
Sbjct: 359 FHACAGLILPSLARLRTMYVPNELRGGMISLSLAPSNAAILFFVVQGGYYRNIGNATIFA 418

Query: 420 FAALGLFIAAGCMHVLKRWGKQPYQNWHKL 449
           FAALGLF AAGCMHVLKRWGKQPYQN HKL
Sbjct: 419 FAALGLFGAAGCMHVLKRWGKQPYQNGHKL 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448260|ref|XP_004141884.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Cucumis sativus] gi|449511005|ref|XP_004163836.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Cucumis sativus]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 291/451 (64%), Positives = 368/451 (81%), Gaps = 3/451 (0%)

Query: 1   MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLP--SKSSSSSSSSLFDHSNSSSFVPFQRN 58
           M V IE+       +L+IFIFLSCF SIFLLP  SK+SS+ + + F+H  SS+F  FQR 
Sbjct: 1   MAVIIENSVWEPNPYLFIFIFLSCFLSIFLLPYASKNSSTRAPAPFEHGFSSAFSTFQRK 60

Query: 59  FLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQ 118
           FLLL+SLASVMEGLWSV+GE+E  Y GV++EQ++L LC G++A+LFVG+FLG++SDLIGQ
Sbjct: 61  FLLLYSLASVMEGLWSVYGEFEFTYRGVSREQIVLSLCVGYAASLFVGTFLGILSDLIGQ 120

Query: 119 KKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQD 178
           KK+C+ F I+HL   +WK I+ HPS+++A++ LSLA+SIFSF+FETW+   HEKQGQRQD
Sbjct: 121 KKICMTFCIIHLVTAIWKRISVHPSLFIASVGLSLATSIFSFSFETWMVHHHEKQGQRQD 180

Query: 179 ILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTE 238
           +LSDTFWLMT FES +L+G Q+L N L+G DVK+ +  SSTA+VFL+++ +  + +GWTE
Sbjct: 181 MLSDTFWLMTIFESVSLVGNQMLVNSLIGDDVKRNMFSSSTAAVFLALICLTFIIKGWTE 240

Query: 239 -NPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGL 297
            + ++  +DYRTSF  YI  DKRIWLL  AQA + FS+A FWILWAPTLVADGREVHLGL
Sbjct: 241 VSQRIELEDYRTSFSAYILSDKRIWLLAWAQASVHFSVAFFWILWAPTLVADGREVHLGL 300

Query: 298 IFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALF 357
           I+P LLG+R+LGS++FPWL+SG SS RTEDCLLY F + G V SI+A+DYQE+G+LV LF
Sbjct: 301 IYPCLLGSRILGSSLFPWLMSGTSSLRTEDCLLYCFAISGLVMSIVAFDYQELGVLVMLF 360

Query: 358 CLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAM 417
            +FHACVGLILPSLA+LRTMYVPN+LRGGMISLSLAPANAAIL FLL  G+YR IEN+ +
Sbjct: 361 SIFHACVGLILPSLAKLRTMYVPNKLRGGMISLSLAPANAAILFFLLQGGYYRRIENSVI 420

Query: 418 VAFAALGLFIAAGCMHVLKRWGKQPYQNWHK 448
           +AFAA+GLF +AG ++ LKRWGK PYQ W K
Sbjct: 421 LAFAAIGLFTSAGSVYALKRWGKHPYQTWQK 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453663|ref|XP_003597112.1| Major facilitator superfamily domain-containing protein [Medicago truncatula] gi|357482681|ref|XP_003611627.1| Major facilitator superfamily domain-containing protein [Medicago truncatula] gi|355486160|gb|AES67363.1| Major facilitator superfamily domain-containing protein [Medicago truncatula] gi|355512962|gb|AES94585.1| Major facilitator superfamily domain-containing protein [Medicago truncatula]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/449 (64%), Positives = 356/449 (79%), Gaps = 4/449 (0%)

Query: 1   MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFL 60
           MGV IES        ++IFIF+ C FSIFL P   +S+ +S++FDH  SSSF+ FQRNFL
Sbjct: 1   MGVVIESSIWELNPSIFIFIFVCCIFSIFLYPH--ASNRTSTIFDHGISSSFLRFQRNFL 58

Query: 61  LLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK 120
           +++SLASV+EGLWSVFGE+EL  +G  +E+M++ LC G++ ALF   FLGM+SDLIGQKK
Sbjct: 59  VIYSLASVVEGLWSVFGEFELASHGFDREKMIMSLCYGYTTALFAAPFLGMLSDLIGQKK 118

Query: 121 VCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDIL 180
           VCLIF ILHLFVGVWK IT  PS+++ +ICLS+A++IFSF+FETW+ I+HEKQG R D L
Sbjct: 119 VCLIFCILHLFVGVWKKITQQPSIFMTSICLSMANTIFSFSFETWMVIQHEKQGHRLDSL 178

Query: 181 SDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP 240
           +DT+WLMTFFESA  I  Q+ ANWL+  +++K   PSS A +FL+I+  I ++RGWTE P
Sbjct: 179 NDTYWLMTFFESACFIASQMFANWLIDNNMEKNTAPSS-AVIFLAIICFILLTRGWTETP 237

Query: 241 -KMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIF 299
              +F +Y  SF+TYIFGDKRIWLL  AQ  L FSI LFWILWAPT+VADGREV LGLIF
Sbjct: 238 GTTSFKEYSMSFYTYIFGDKRIWLLTWAQTSLHFSIGLFWILWAPTVVADGREVQLGLIF 297

Query: 300 PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL 359
              LG+RMLGSTVFP L SGPSS R EDCL++A+++L  + SI+AYDYQEIG+LV LF L
Sbjct: 298 TCFLGSRMLGSTVFPCLTSGPSSLRIEDCLVFAYIILAVLLSIVAYDYQEIGVLVTLFSL 357

Query: 360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVA 419
           FHACVG +LPSLARLRTMYVPNELRGGM+ LSLAPANAAILL ++  G+YRN+ NA ++A
Sbjct: 358 FHACVGFVLPSLARLRTMYVPNELRGGMMGLSLAPANAAILLSVVQGGYYRNVGNATLMA 417

Query: 420 FAALGLFIAAGCMHVLKRWGKQPYQNWHK 448
           F   GL +AAGCMH LK+ GKQPY NWHK
Sbjct: 418 FGVFGLLLAAGCMHALKQCGKQPYNNWHK 446

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495500|ref|XP_003516615.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Glycine max]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 281/449 (62%), Positives = 343/449 (76%), Gaps = 2/449 (0%)

Query: 1   MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFL 60
           MGV +ES         YIFIF+ C FSIFL P  S+ + +S++FDH  S  F+ FQRNFL
Sbjct: 1   MGVVVESSVWEPNPSTYIFIFVCCCFSIFLFPHVSNLNRTSTIFDHGTSHPFLRFQRNFL 60

Query: 61  LLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK 120
           LL+SLASVMEGLWSVFGEYEL  YG+ +E M+  LC G++ ALF   FLG++SDLIG KK
Sbjct: 61  LLYSLASVMEGLWSVFGEYELASYGIGRENMVKSLCYGYTTALFAAPFLGVLSDLIGHKK 120

Query: 121 VCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDIL 180
           V LIF ILH  VGVWK I+  PS+++ +ICLSL ++IFSF+FETW+  +HEKQG R D L
Sbjct: 121 VSLIFCILHFIVGVWKKISEPPSMFMTSICLSLTNTIFSFSFETWMVTQHEKQGHRLDSL 180

Query: 181 SDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP 240
           +D +WLMTFFESA  I  Q+ ANWL+G + +K   PSS A++F + +    ++RGWTENP
Sbjct: 181 NDAYWLMTFFESACFIASQMFANWLIGNNTEKNTAPSS-AAIFFAAICFTFITRGWTENP 239

Query: 241 KMA-FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIF 299
             A   +Y  +F+ YI GDKRIWLL  AQ CL FS  +FWILWAPT+VADGREV LGLI+
Sbjct: 240 GSASLKEYSHAFYAYILGDKRIWLLAWAQTCLHFSTGIFWILWAPTVVADGREVQLGLIY 299

Query: 300 PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL 359
           P  LG+RMLGST FP L SGPSS RTEDCL+ A+++L  + SI+AYDYQEIG+LV LFCL
Sbjct: 300 PCFLGSRMLGSTAFPCLTSGPSSLRTEDCLVIAYIILALLLSIVAYDYQEIGVLVTLFCL 359

Query: 360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVA 419
           FHACVG +LPSLARLRTMYVPNELRGGM+  SLAPANAAILL ++  G+YRN+ NAA++A
Sbjct: 360 FHACVGFVLPSLARLRTMYVPNELRGGMMGFSLAPANAAILLSVVQGGYYRNVGNAALMA 419

Query: 420 FAALGLFIAAGCMHVLKRWGKQPYQNWHK 448
           F   GL +AAGCMH LK+WGKQPY NWHK
Sbjct: 420 FGVCGLLLAAGCMHALKQWGKQPYNNWHK 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540641|ref|XP_003538795.1| PREDICTED: major facilitator superfamily domain-containing protein 5-like [Glycine max]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/450 (63%), Positives = 346/450 (76%), Gaps = 3/450 (0%)

Query: 1   MGVTIESP-FGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNF 59
           MGV +ES  F       YIFIF+ C FSIFL P  S+ + +S++FDH  S  F+ FQRNF
Sbjct: 1   MGVVVESSVFWEPNPSTYIFIFVCCCFSIFLFPHVSNLNRTSTIFDHGTSHWFLRFQRNF 60

Query: 60  LLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQK 119
           LL +SLASVMEGLWSVFGEYEL  YG+ +E M+  LC G++ ALF   FLG++SDLIG K
Sbjct: 61  LLHYSLASVMEGLWSVFGEYELASYGIGRENMVKSLCYGYTTALFAAPFLGVLSDLIGHK 120

Query: 120 KVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDI 179
           KV LIF ILH  VGVWK I+  PS+++ +ICLSLA++IFSF+FETW+  +HEKQG R D 
Sbjct: 121 KVSLIFCILHFIVGVWKKISEPPSMFMTSICLSLANTIFSFSFETWMVTQHEKQGHRLDS 180

Query: 180 LSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTEN 239
           L+DT+WLMTFFESA  I  Q+ ANWL+G + +K   PSS A +F + +    ++RGWTEN
Sbjct: 181 LNDTYWLMTFFESACFIASQMFANWLIGNNTEKITAPSS-AVIFFAAICFTFITRGWTEN 239

Query: 240 PKMA-FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLI 298
           P  A   +Y  S + YI GDKRIWLL  AQ CL FSI +FWILWAPT+VADGREVHLGLI
Sbjct: 240 PGSASLKEYSRSLYAYILGDKRIWLLAWAQTCLHFSIGIFWILWAPTVVADGREVHLGLI 299

Query: 299 FPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFC 358
           +P  LG+RMLGST FP L SGPSS RTEDCL++A+++L  + SI+AYDYQE+G+LV LFC
Sbjct: 300 YPCFLGSRMLGSTAFPCLTSGPSSLRTEDCLVFAYIILALLLSIVAYDYQEVGVLVILFC 359

Query: 359 LFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMV 418
           LFHACVG +LPSLARLRTMYVPNELRGGM+  SLAPANAAILL ++  G+YRN+ NAA++
Sbjct: 360 LFHACVGFVLPSLARLRTMYVPNELRGGMMGFSLAPANAAILLSVVQGGYYRNVGNAALM 419

Query: 419 AFAALGLFIAAGCMHVLKRWGKQPYQNWHK 448
           AF   GL +AAGCMH LK+WGKQPY NWHK
Sbjct: 420 AFGVCGLLLAAGCMHALKQWGKQPYNNWHK 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781852|emb|CAN72170.1| hypothetical protein VITISV_036093 [Vitis vinifera]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/382 (71%), Positives = 321/382 (84%), Gaps = 1/382 (0%)

Query: 69  MEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL 128
           MEG+ SVFGE+EL YYGV++EQM++ LC G   A F  +FLGM+ DLIGQKK CL F +L
Sbjct: 539 MEGVSSVFGEFELAYYGVSREQMVVSLCVGCLVAFFFSAFLGMLCDLIGQKKACLSFCVL 598

Query: 129 HLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT 188
           HL VG+W+ I+  PSVW+ANICLSLA+SIFSF+FETW+ +EH+K G R+DIL DTFWLMT
Sbjct: 599 HLSVGIWRRISLQPSVWLANICLSLATSIFSFSFETWMTVEHDKLGYRRDILIDTFWLMT 658

Query: 189 FFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMA-FDDY 247
           FFESA+ IG Q+LANWL+G DVKK VV  S ASV L+++ II +++ W E P+MA F DY
Sbjct: 659 FFESASFIGSQLLANWLLGSDVKKSVVAPSIASVILAMITIIYITKCWAETPQMAVFKDY 718

Query: 248 RTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARM 307
           + SF+T+IF DKRIWLL  AQAC+ FSIA+FWILWAPTLVADGREVHLGLIFP LLGARM
Sbjct: 719 KMSFYTHIFCDKRIWLLACAQACIHFSIAVFWILWAPTLVADGREVHLGLIFPCLLGARM 778

Query: 308 LGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLI 367
           LGST  PWL S PSS RTED L+YAF+++G V S++AYDYQEIG+LV LFCLFHAC GLI
Sbjct: 779 LGSTALPWLTSVPSSLRTEDYLVYAFIIMGLVLSVVAYDYQEIGVLVTLFCLFHACAGLI 838

Query: 368 LPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFI 427
           LPSLARLRTMYVPNELRGGMISLSLAP+NAAIL F++  G+YRNI NA + AFAALGLF 
Sbjct: 839 LPSLARLRTMYVPNELRGGMISLSLAPSNAAILFFVVQGGYYRNIGNATIFAFAALGLFG 898

Query: 428 AAGCMHVLKRWGKQPYQNWHKL 449
           AAGCMHVLKRWGKQPYQN HKL
Sbjct: 899 AAGCMHVLKRWGKQPYQNGHKL 920

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074231|ref|XP_002304311.1| predicted protein [Populus trichocarpa] gi|222841743|gb|EEE79290.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/453 (62%), Positives = 345/453 (76%), Gaps = 8/453 (1%)

Query: 1   MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLF-DHSNSSSFVPFQRNF 59
           MGV +E+        LY FI + CFFSI L P   + S S S F D S S S     R F
Sbjct: 1   MGVEVENSKWEPNPSLYGFIIMCCFFSIALFPRFFNKSVSPSAFSDQSLSPSS---HRYF 57

Query: 60  LLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIG-Q 118
           L L+ LAS MEG+WSVFG++E VY G++KEQ++  LC GF ++L   S L  +SD IG  
Sbjct: 58  LFLYCLASAMEGVWSVFGDFEFVYNGMSKEQILFSLCLGFGSSLLFASLLPFLSDSIGGH 117

Query: 119 KKVCLIFFILHLFVGVWKSIT--AHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQR 176
            K CL+F ILHLFVG WK +   +HP +W+  +  SLA+SIFSF FE W+ +E+E QG R
Sbjct: 118 HKACLMFCILHLFVGTWKRMVPQSHPCIWLPTLSSSLATSIFSFAFEAWLVLENENQGYR 177

Query: 177 QDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGW 236
           Q  L+ TFWLMTFFESA+LIG QVLANWL+  +V  G+  SSTA++F++I+GI CV++GW
Sbjct: 178 QRALTHTFWLMTFFESASLIGSQVLANWLLASNVDTGIASSSTATIFIAIIGIFCVTKGW 237

Query: 237 TENPKMA-FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHL 295
            + P  A   D R   +T+IF DKRI LL  A ACLQFSIA+FWILWAPTLVADGREVHL
Sbjct: 238 KQAPYSAPVKDRRQMSYTHIFSDKRILLLGFAHACLQFSIAIFWILWAPTLVADGREVHL 297

Query: 296 GLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVA 355
           GLI+P L+GARMLGSTVFPWL+SGPSS R EDCL+YAF VLG   SI+AYDYQEIG+LV+
Sbjct: 298 GLIYPCLMGARMLGSTVFPWLLSGPSSLRIEDCLVYAFTVLGLALSIVAYDYQEIGVLVS 357

Query: 356 LFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENA 415
           LFCLFHA VGLI+PSLARLRT++VPNELRGGMISLSLAPANAAIL  L+LRG+Y+ IEN+
Sbjct: 358 LFCLFHAGVGLIIPSLARLRTIHVPNELRGGMISLSLAPANAAILFLLILRGYYQKIENS 417

Query: 416 AMVAFAALGLFIAAGCMHVLKRWGKQPYQNWHK 448
            +VA AALGLF+A+G MH+LKRWGKQP+QNWHK
Sbjct: 418 TIVALAALGLFMASGSMHLLKRWGKQPFQNWHK 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821551|ref|XP_002878658.1| hypothetical protein ARALYDRAFT_481182 [Arabidopsis lyrata subsp. lyrata] gi|297324497|gb|EFH54917.1| hypothetical protein ARALYDRAFT_481182 [Arabidopsis lyrata subsp. lyrata]

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/450 (61%), Positives = 344/450 (76%), Gaps = 2/450 (0%)

Query: 1   MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFL 60
           MGV IE+         +IF F+S F SIFL P  + + +  S FDHS SSSF  FQR FL
Sbjct: 1   MGVVIETFIWEPSSSFFIFFFVSTFLSIFLFPYFAKNRTFGS-FDHSISSSFARFQRWFL 59

Query: 61  LLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK 120
            +++L+SVMEGLWSV+GE EL  YGV+KE M+  LC G+S AL +G  LG++SDLIGQK+
Sbjct: 60  AIYTLSSVMEGLWSVYGELELASYGVSKESMVFYLCVGYSTALVLGPLLGVLSDLIGQKR 119

Query: 121 VCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDIL 180
           +CL++ +LHL VGVWK IT  PS W  NICLSLA  ++SF FETW+ +EHEKQ QR D L
Sbjct: 120 ICLLYCVLHLVVGVWKRITMSPSAWFPNICLSLAGLVYSFGFETWLVVEHEKQSQRNDSL 179

Query: 181 SDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP 240
           ++TFWLM F ESA+LIGGQVLANWLV  +V+ G+  S+TAS+FLSI+ IIC+ +   E  
Sbjct: 180 NETFWLMAFLESASLIGGQVLANWLVDENVQHGIALSATASLFLSIVTIICIVQTAKEPL 239

Query: 241 K-MAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIF 299
           K + F DY  +F+ Y+ GDKRIW L  +QACLQFS A+FWILWAPT+VADGREV+LGLI+
Sbjct: 240 KTLPFRDYSAAFYAYVLGDKRIWFLGTSQACLQFSTAVFWILWAPTIVADGREVNLGLIY 299

Query: 300 PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL 359
           P  LG+RMLGSTVFPWL+SG S  R EDCL+Y + +LG VFSI+AYDYQEI ILV LFCL
Sbjct: 300 PCFLGSRMLGSTVFPWLMSGQSLLRLEDCLVYIYAILGVVFSIVAYDYQEIRILVVLFCL 359

Query: 360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVA 419
           FH   GL LP LARLRTMYVPNELRGGMISLS  PANAAI+  L+ RG+   IEN+ ++A
Sbjct: 360 FHGFAGLSLPLLARLRTMYVPNELRGGMISLSQFPANAAIVFLLIQRGYSNKIENSTVMA 419

Query: 420 FAALGLFIAAGCMHVLKRWGKQPYQNWHKL 449
           F A+ LF A+GC+++L+RWGK P+Q+WHKL
Sbjct: 420 FGAISLFTASGCIYLLRRWGKSPHQDWHKL 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681953|ref|NP_850037.1| major facilitator protein [Arabidopsis thaliana] gi|26451523|dbj|BAC42859.1| unknown protein [Arabidopsis thaliana] gi|29824249|gb|AAP04085.1| unknown protein [Arabidopsis thaliana] gi|330252314|gb|AEC07408.1| major facilitator protein [Arabidopsis thaliana]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/450 (61%), Positives = 343/450 (76%), Gaps = 2/450 (0%)

Query: 1   MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFL 60
           MGV IE+         +IF F+S F SI L P  + + +  S FDHS SSSF  FQR FL
Sbjct: 1   MGVVIETFIWEPSSSFFIFFFVSTFLSISLFPYLAKNRTFGS-FDHSISSSFARFQRWFL 59

Query: 61  LLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK 120
            +++L+SVMEGL SV+GE EL  YG++KE M+  LC G+S AL +G  LG++SDLIGQKK
Sbjct: 60  AIYTLSSVMEGLLSVYGELELTTYGLSKESMVFYLCVGYSTALVLGPVLGVVSDLIGQKK 119

Query: 121 VCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDIL 180
           +CL++ +LHL VGVWK IT  PS W AN+ LSLA  ++SF FETW+ +EHEKQ QR D L
Sbjct: 120 ICLLYCVLHLIVGVWKRITMSPSAWFANVFLSLAGLVYSFGFETWLVVEHEKQSQRNDSL 179

Query: 181 SDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP 240
           ++TFWLMTF ESA+LIGGQVLANWLVG +V+ G+  S+TAS+ LS++ IIC+ +   E  
Sbjct: 180 NETFWLMTFLESASLIGGQVLANWLVGENVQDGIALSATASLLLSVVTIICIVQTAKEPL 239

Query: 241 K-MAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIF 299
           K + F DY T+F+ Y+ GDKRIW L  +QACLQFS A+FWILWAPT+VADGREV+LGLI+
Sbjct: 240 KTLPFRDYSTAFYAYVLGDKRIWFLGTSQACLQFSTAVFWILWAPTIVADGREVNLGLIY 299

Query: 300 PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL 359
           P  LG+RMLGSTVFPWL+SG S  R EDCL+Y + +LG VFSI+AYDYQEI ILV LFCL
Sbjct: 300 PCFLGSRMLGSTVFPWLMSGQSLLRLEDCLVYIYALLGIVFSIVAYDYQEIRILVVLFCL 359

Query: 360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVA 419
           FH   GL LP LARLRTMYVPNELRGGMISLS  PANAAIL FL+ RG+   IEN+ M+A
Sbjct: 360 FHGFAGLALPLLARLRTMYVPNELRGGMISLSQVPANAAILFFLIQRGYSNKIENSTMMA 419

Query: 420 FAALGLFIAAGCMHVLKRWGKQPYQNWHKL 449
             A+ LF A+GC+++L+RWGK P+ +WHKL
Sbjct: 420 LGAISLFTASGCIYMLRRWGKSPHHDWHKL 449

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584896|ref|XP_002533163.1| conserved hypothetical protein [Ricinus communis] gi|223527035|gb|EEF29222.1| conserved hypothetical protein [Ricinus communis]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/407 (64%), Positives = 320/407 (78%), Gaps = 4/407 (0%)

Query: 1   MGVTIESPFGNRVHFLYIFIFLSCFFSIFLLPSKS--SSSSSSSLFDHSNSSSFVPFQRN 58
           MGV IES        LY+FI + CF SI   P  S  + + S S F H  S SF+ FQ  
Sbjct: 1   MGVVIESSIWEPNPSLYVFILICCFSSIIFFPHASIKNKNKSQSPFSHVISPSFLRFQSK 60

Query: 59  FLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQ 118
           FL LFSLASVMEGLWSVFGE+ELV YGV+K Q +  LC GF AALF+G+ LGM+SD IG 
Sbjct: 61  FLFLFSLASVMEGLWSVFGEFELVLYGVSKVQTVTYLCVGFGAALFLGTLLGMLSDFIGH 120

Query: 119 KKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQD 178
           KK CL+F ILHLFVG+WK I +HPS+W+ +ICLSLA+SIFSF+FE W+  E++KQG  QD
Sbjct: 121 KKACLMFCILHLFVGIWKRIMSHPSIWLGSICLSLATSIFSFSFEAWLVAENKKQGYGQD 180

Query: 179 ILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTE 238
            LSDTFWLMTF ESA+LIG QVL NWL+G + +KG++ S TA+ FL+++GI+C+S+GW E
Sbjct: 181 TLSDTFWLMTFLESASLIGSQVLGNWLLGSNPEKGIMSSYTAASFLAMIGILCLSKGWKE 240

Query: 239 NPK-MAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGL 297
             +  A  ++R S+ T+IF DKR+WLL  A +CLQFS+A+FWILWAPTLVADGREVHLGL
Sbjct: 241 TTQSEASQNFRVSY-THIFTDKRMWLLGFAHSCLQFSVAVFWILWAPTLVADGREVHLGL 299

Query: 298 IFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALF 357
           ++P  LG+RMLGSTVFPWL++G SS RTEDCL YAF+VLGF  S +AYDYQEIG LV++F
Sbjct: 300 VYPCFLGSRMLGSTVFPWLLTGSSSLRTEDCLGYAFLVLGFASSFVAYDYQEIGALVSVF 359

Query: 358 CLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLL 404
           C+FHA VGLI+PSLARLRTM+VPNELRGGMIS SL PANAAIL  L+
Sbjct: 360 CVFHAGVGLIIPSLARLRTMHVPNELRGGMISFSLVPANAAILFLLI 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
TAIR|locus:1005716655	449	AT2G23093 "AT2G23093" [Arabido	0.879	0.879	0.626	5.8e-137
WB|WBGene00021870	432	Y54G2A.4 [Caenorhabditis elega	0.759	0.789	0.304	4.9e-30
TAIR|locus:2137707	460	AT4G27720 [Arabidopsis thalian	0.616	0.602	0.313	9.3e-28
TAIR|locus:2082971	460	AT3G49310 [Arabidopsis thalian	0.612	0.597	0.309	7.3e-26
TAIR|locus:2019429	462	AT1G64650 [Arabidopsis thalian	0.610	0.593	0.301	1.4e-24
MGI|MGI:2145901	450	Mfsd5 "major facilitator super	0.757	0.755	0.251	2.8e-20
UNIPROTKB|Q6N075	450	MFSD5 "Major facilitator super	0.757	0.755	0.251	2.7e-19
UNIPROTKB|Q0VC03	450	MFSD5 "Major facilitator super	0.757	0.755	0.251	1.1e-18
ZFIN|ZDB-GENE-040718-468	481	mfsd5 "major facilitator super	0.334	0.311	0.301	3.4e-13
TIGR_CMR|BA_1652	404	BA_1652 "permease, putative" [	0.757	0.841	0.258	1.9e-05

TAIR|locus:1005716655 AT2G23093 "AT2G23093" [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 248/396 (62%), Positives = 306/396 (77%)

Query:    55 FQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISD 114
             FQR FL +++L+SVMEGL SV+GE EL  YG++KE M+  LC G+S AL +G  LG++SD
Sbjct:    54 FQRWFLAIYTLSSVMEGLLSVYGELELTTYGLSKESMVFYLCVGYSTALVLGPVLGVVSD 113

Query:   115 LIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQG 174
             LIGQKK+CL++ +LHL VGVWK IT  PS W AN+ LSLA  ++SF FETW+ +EHEKQ 
Sbjct:   114 LIGQKKICLLYCVLHLIVGVWKRITMSPSAWFANVFLSLAGLVYSFGFETWLVVEHEKQS 173

Query:   175 QRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSR 234
             QR D L++TFWLMTF ESA+LIGGQVLANWLVG +V+ G+  S+TAS+ LS++ IIC+ +
Sbjct:   174 QRNDSLNETFWLMTFLESASLIGGQVLANWLVGENVQDGIALSATASLLLSVVTIICIVQ 233

Query:   235 GWTENPK-MAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREV 293
                E  K + F DY T+F+ Y+ GDKRIW L  +QACLQFS A+FWILWAPT+VADGREV
Sbjct:   234 TAKEPLKTLPFRDYSTAFYAYVLGDKRIWFLGTSQACLQFSTAVFWILWAPTIVADGREV 293

Query:   294 HLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGIL 353
             +LGLI+P  LG+RMLGSTVFPWL+SG S  R EDCL+Y + +LG VFSI+AYDYQEI IL
Sbjct:   294 NLGLIYPCFLGSRMLGSTVFPWLMSGQSLLRLEDCLVYIYALLGIVFSIVAYDYQEIRIL 353

Query:   354 VALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIE 413
             V LFCLFH   GL LP LARLRTMYVPNELRGGMISLS  PANAAIL FL+ RG+   IE
Sbjct:   354 VVLFCLFHGFAGLALPLLARLRTMYVPNELRGGMISLSQVPANAAILFFLIQRGYSNKIE 413

Query:   414 NAAMVXXXXXXXXXXXXCMHVLKRWGKQPYQNWHKL 449
             N+ M+            C+++L+RWGK P+ +WHKL
Sbjct:   414 NSTMMALGAISLFTASGCIYMLRRWGKSPHHDWHKL 449

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00021870 Y54G2A.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 111/365 (30%), Positives = 175/365 (47%)

Query:    55 FQRNFLLLFSLASVMEGLWS--VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMI 112
             FQR +L+++ +A   + L    V+  YE   YG++K Q+ +L  AGF ++L  G+F+G I
Sbjct:    35 FQRTYLIVYMMAVAGDWLQGPHVYALYES--YGMSKHQIEILFIAGFGSSLLFGTFIGSI 92

Query:   113 SDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEK 172
             +D  G++  CL++ IL+    + K     P + +      +A+SI    FE+W+  EH  
Sbjct:    93 ADKFGRRNNCLMYAILYGGACITKHFGNMPVLMIGRFLGGIATSILYSAFESWLIFEHNT 152

Query:   173 QGQRQDILSDTFWLMTFFESA-ALIGGQVLANWLVGIDVKKG-VVPSSTASVFLSILGII 230
             +G    +L   F       S  A+I G V A ++     + G V P   A   L I+ +I
Sbjct:   153 RGFSDSLLGTVFSNAALGNSLIAIISG-VAAQFVAE---RFGFVAPFDLALSVLLIMAVI 208

Query:   231 CVSRGWTENPKMAFDDYRTSF--FTY-IFGDKRIWLLVLAQACLQFSIALFWILWAPTLV 287
              ++  W EN        + SF   T  I  D  ++ L L Q+  + S+  F + W P L 
Sbjct:   209 IMNT-WPENYGNEKAPVKESFQKATQAIREDPNVFCLGLVQSLFEGSMYTFVLEWTPALS 267

Query:   288 ADGREVHL--GLIFPSLLGARMLGSTVFPWLISG--PSSFRTEDCLLYAFVVLGFVFSII 343
                 +V +  G IF + + A M+GS+VF  L     P SF     LL A V L     I+
Sbjct:   268 RAAGDVGIPHGYIFAAFMVATMIGSSVFKLLQQHERPESFMRY-VLLLAAVCLSM--PIV 324

Query:   344 AYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFL 403
             A D   + ++   F +F  C G+  PS+  LR  YV  E R   ++L   P N  I++F+
Sbjct:   325 APD--SLALVFGGFLVFEMCCGIFWPSMGCLRGTYVSEETRSTTLNLFRVPLNL-IVIFI 381

Query:   404 LLRGF 408
             L + F
Sbjct:   382 LWQNF 386

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2137707 AT4G27720 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 9.3e-28, P = 9.3e-28
 Identities = 92/293 (31%), Positives = 147/293 (50%)

Query:    55 FQRNFLLLFSLASVMEGLWSVFGEYEL-VY--YGVAKEQMMLLLCAGFSAALFVGSFLGM 111
             F+ N+LL++SL  +M G W + G Y   +Y  YG  K  +  L  AGF +++  G+ +G 
Sbjct:    38 FKNNYLLVYSL--MMAGDW-LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGS 94

Query:   112 ISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHE 171
             ++D  G+K+ C+ + I ++   + K    +  + V  +   +A+S+   +FE+W+  EH 
Sbjct:    95 LADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSSFESWLVAEHN 154

Query:   172 KQGQRQDILSDTFWLMTFFESA--ALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI 229
             K+G  Q  LS TF    FF +   A+I G +  N LV       V P   A+ FL+I G+
Sbjct:   155 KRGFEQQWLSVTFSKAVFFGNGLVAIIAG-LFGNLLVDTFSLGPVAPFDAAACFLTI-GM 212

Query:   230 ICVSRGWTEN--PKMAFDDYRTSF---FTYIFGDKRIWLLVLAQACLQFSIALFWILWAP 284
               +   WTEN        D  T F      I  D++I LL   Q+  + S+  F  LW P
Sbjct:   213 AVILSSWTENYGDPSENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTP 272

Query:   285 TLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLG 337
              L  +  E+  G IF + + A MLGS++   L+S  S+ + E  +   F+V G
Sbjct:   273 ALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSR-STPKVESYMQIVFLVSG 324

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2082971 AT3G49310 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 7.3e-26, P = 7.3e-26
 Identities = 90/291 (30%), Positives = 146/291 (50%)

Query:    55 FQRNFLLLFSLASVMEGLWSVFGEYEL-VY--YGVAKEQMMLLLCAGFSAALFVGSFLGM 111
             F+ N+LL+FS+  +M G W + G Y   +Y  YG  K  +  L  AGF +++  G+ +G 
Sbjct:    38 FKNNYLLVFSI--MMAGDW-LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGS 94

Query:   112 ISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHE 171
             ++D  G+K+ C+ + I+++   + K    +  + V  I   +A+S+    FE+W+  EH 
Sbjct:    95 LADKQGRKRACVTYCIVYILSCITKHSPQYKVLMVGRILGGIATSLLFSAFESWLIAEHN 154

Query:   172 KQGQRQDILSDTFWLMTFFESA--ALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI 229
             K+   Q  LS TF    F  +   A++ G +  N LV       V P   A+ FL+I G+
Sbjct:   155 KRNFEQQWLSLTFSKAVFLGNGLVAILSG-LFGNLLVDTFSFGPVAPFDAAACFLAI-GM 212

Query:   230 ICVSRGWTENPKMAFD--DYRTSFFTY---IFGDKRIWLLVLAQACLQFSIALFWILWAP 284
               +   W+EN     D  D  T F      I  D++I LL   Q+  + S+  F  LW P
Sbjct:   213 AIILGTWSENFGDPSDSKDLLTQFKVAAIAIASDEKIALLGAIQSLFEASMYTFVFLWTP 272

Query:   285 TLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVV 335
              L  +  E+  G +F + + A MLGS++   L+S  SS R E+ +   F+V
Sbjct:   273 ALSPNDEEIPHGFVFATFMLASMLGSSLAARLMSR-SSLRVENYMQIVFLV 322

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2019429 AT1G64650 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 88/292 (30%), Positives = 148/292 (50%)

Query:    55 FQRNFLLLFSLASVMEGLWSVFGEYEL-VY--YGVAKEQMMLLLCAGFSAALFVGSFLGM 111
             F+ N+LL++SL  +M G W + G Y   +Y  YG  K ++  L  AGF +++  G+ +G 
Sbjct:    38 FKNNYLLVYSL--MMAGDW-LQGPYVYYLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGS 94

Query:   112 ISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHE 171
             ++D  G+K+  + + I ++   + K    +  + V  +   +A+S+    FE+W+  EH 
Sbjct:    95 LADKQGRKRASITYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLVAEHN 154

Query:   172 KQGQRQDILSDTFWLMTFFESA--ALIGGQVLANWLVGIDVKKG-VVPSSTASVFLSILG 228
             K+G  Q  LS TF    F  +   A+I G +  N+LV   +  G V P   A+ FL+I G
Sbjct:   155 KRGFEQQWLSVTFSKAIFLGNGLVAIIAG-LFGNYLVD-SLSLGPVAPFDAAACFLAI-G 211

Query:   229 IICVSRGWTEN--PKMAFDDYRTSF---FTYIFGDKRIWLLVLAQACLQFSIALFWILWA 283
             +  +   W+EN        D  T F    + I  D++I LL   Q+  + S+  F  LW 
Sbjct:   212 MAVIISSWSENYGDPSENKDLLTQFKNAASAIASDEKIALLGAIQSLFEGSMYTFVFLWT 271

Query:   284 PTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVV 335
             P L  +  ++  G IF + + A MLGS++   L++  SS + E  +   FV+
Sbjct:   272 PALSPNEEDIPHGFIFATFMLASMLGSSIASRLLAH-SSPKVESYMQIVFVI 322

GO:0009507 "chloroplast" evidence=ISM

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

MGI|MGI:2145901 Mfsd5 "major facilitator superfamily domain containing 5" [Mus musculus (taxid:10090)]

 Score = 260 (96.6 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 92/366 (25%), Positives = 166/366 (45%)

Query:    55 FQRNFLLLFSLASVMEGLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMIS 113
             FQ +F  ++ LA   + L + +  Y+L  +Y   + Q+ +L   G ++ +  G     + 
Sbjct:    41 FQLDFYQVYFLALAADWLQAPY-LYKLYQHYHFLEGQIAILYVCGLASTVLFGLVASSLV 99

Query:   114 DLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEH-EK 172
             D +G+KK C++F + +    + K    +  + V      L++++    FE W   EH E+
Sbjct:   100 DWLGRKKSCVLFSLTYSLCCITKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVER 159

Query:   173 QGQRQDILSDTFWLMTFFES----AALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG 228
                  + +  TF    F+      AA +  + +A+W +G+     V P   A   L++ G
Sbjct:   160 HDFPAEWIPATFARAAFWNHVLAVAAGVAAEAVASW-IGLGP---VAPFVAAIPLLALTG 215

Query:   229 IICVSRGWTEN--PKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTL 286
              + + R W EN   + AF          +  D+R+ LL + QA  +  I +F  LW P L
Sbjct:   216 ALAL-RNWGENYDRQRAFSKTCAGGLRCLLSDRRVLLLGVIQALFESVIFIFVFLWTPVL 274

Query:   287 VADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD 346
               D     LG++F S + A +LGS+++   I+    +  +   L +  VL  VFS+    
Sbjct:   275 --DPHGAPLGIVFSSFMAASLLGSSLYR--IATSKRYHLQPMHLLSLAVLIVVFSLFMLT 330

Query:   347 Y-----QE--IGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI 399
             +     QE  +   +A   +  AC GL  PS++ LR   +P   + G+++    P +   
Sbjct:   331 FSTSPGQENPVESFIAFLLIELAC-GLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHLLA 389

Query:   400 LLFLLL 405
              L LL+
Sbjct:   390 CLGLLV 395

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6N075 MFSD5 "Major facilitator superfamily domain-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 92/366 (25%), Positives = 166/366 (45%)

Query:    55 FQRNFLLLFSLASVMEGLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMIS 113
             FQ +F  ++ LA   + L + +  Y+L  +Y   + Q+ +L   G ++ +  G     + 
Sbjct:    41 FQLDFYQVYFLALAADWLQAPY-LYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLV 99

Query:   114 DLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEH-EK 172
             D +G+K  C++F + +    + K    +  + V      L++++    FE W   EH E+
Sbjct:   100 DWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVER 159

Query:   173 QGQRQDILSDTFWLMTFFESA-ALIGG---QVLANWLVGIDVKKGVVPSSTASVFLSILG 228
                  + +  TF    F+    A++ G   + +A+W +G+     V P   A   L++ G
Sbjct:   160 HDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASW-IGLGP---VAPFVAAIPLLALAG 215

Query:   229 IICVSRGWTEN--PKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTL 286
              + + R W EN   + AF          +  D+R+ LL   QA  +  I +F  LW P L
Sbjct:   216 ALAL-RNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVL 274

Query:   287 VADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD 346
               D     LG+IF S + A +LGS+++   I+    +  +   L +  VL  VFS+    
Sbjct:   275 --DPHGAPLGIIFSSFMAASLLGSSLYR--IATSKRYHLQPMHLLSLAVLIVVFSLFMLT 330

Query:   347 Y-----QEIGI--LVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI 399
             +     QE  +   +A   +  AC GL  PS++ LR   +P   + G+++    P ++  
Sbjct:   331 FSTSPGQESPVESFIAFLLIELAC-GLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHSLA 389

Query:   400 LLFLLL 405
              L LL+
Sbjct:   390 CLGLLV 395

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q0VC03 MFSD5 "Major facilitator superfamily domain-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 247 (92.0 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 92/366 (25%), Positives = 163/366 (44%)

Query:    55 FQRNFLLLFSLASVMEGLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMIS 113
             FQ +F  ++ LA   + L + +  Y+L  +Y   + Q+ +L   G ++ +  G     + 
Sbjct:    41 FQLDFYQVYFLALAADWLQAPY-LYKLYQHYHFLEAQIAILYVCGLASTVLFGLVASSLV 99

Query:   114 DLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEH-EK 172
             D +G+KK C++F + +    + K    +  + V      L++++    FE W   EH E+
Sbjct:   100 DWLGRKKSCVLFSLTYSLCCLTKLSRDYFVLLVGRALGGLSTALLFSAFEAWYIHEHLER 159

Query:   173 QGQRQDILSDTFWLMTFFES----AALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG 228
                  + +  TF    F+      AA +  + +A W+ G+     V P   A   L++ G
Sbjct:   160 HDFPTEWIPATFARAAFWNHVLAVAAGVAAEAVACWM-GLGP---VAPFVAAIPLLALAG 215

Query:   229 IICVSRGWTEN--PKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTL 286
              + +   W EN   + AF          +  D+R+ LL   QA  +  I +F  LW P L
Sbjct:   216 ALAL-HNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVL 274

Query:   287 VADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD 346
               D     LG+IF S + A +LGS+++   I+    +  +   L +  VL  VFS+    
Sbjct:   275 --DPHGAPLGIIFSSFMAASLLGSSLYR--IATSKRYHLQPMHLLSLAVLIVVFSLFMLT 330

Query:   347 Y-----QEIGI--LVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI 399
             +     QE  +   +A   +  AC GL  PS++ LR   +P   + G+++    P +   
Sbjct:   331 FSTSPGQESPVESFIAFLLIELAC-GLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHLLA 389

Query:   400 LLFLLL 405
              L LL+
Sbjct:   390 CLGLLV 395

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

ZFIN|ZDB-GENE-040718-468 mfsd5 "major facilitator superfamily domain containing 5" [Danio rerio (taxid:7955)]

 Score = 144 (55.7 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
 Identities = 48/159 (30%), Positives = 74/159 (46%)

Query:   255 IFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFP 314
             +  D+R+ LL   QA  +  + +F  LW P L   G    LG++F SL+ A M GST+F 
Sbjct:   270 LLSDRRVMLLGGVQALFESVLYIFVFLWTPVLDPHGPP--LGIVFSSLMAATMAGSTLFR 327

Query:   315 WLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY-----QEIGILVALFCLFHACVGLILP 369
                S P   +    L  A ++  F F ++ +       +    L+A   L  AC GL  P
Sbjct:   328 LATSAPYRLQPGHLLCLAILLAFFSFFMLTFSTVPGQPRPRESLLAFLLLELAC-GLYFP 386

Query:   370 SLARLRTMYVPNELRGGMISLSLAPANAAILLFLL-LRG 407
             +++ L+   VP E R  +++    P +    L LL L G
Sbjct:   387 AVSFLQGRVVPVERRAAVLAWFRLPLHLLACLGLLALHG 425

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TIGR_CMR|BA_1652 BA_1652 "permease, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 130 (50.8 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 99/383 (25%), Positives = 160/383 (41%)

Query:    57 RNFLLLF--SLASVMEGLWSVFGEYELV--YYGVAKEQMMLLLC--AGFSAALFVGSFLG 110
             +NF  LF     SV+ G W  F    L+   Y + +   M+ L   +     L +  F+G
Sbjct:    13 KNFNKLFYGQTLSVL-GDW--FHTVALLTFVYSITESPFMIALTFISKGLPQLLLSPFIG 69

Query:   111 MISDLIGQKKVCLIFFILHLFVGVWKSITAHPSV---WVANICLSLASSIFS-FNFETWV 166
              + D   +K + +IF  +   + V   I A   +   ++ANICLS+ S +F      T  
Sbjct:    70 GVVDRFSKKNI-MIFTDITRGILVLTYILASYKIEIIFIANICLSVLSCLFEPAKQATLK 128

Query:   167 AIEHEKQGQRQDILSDTFWLMTFFES--AALIGGQVLANWLVGIDVKKGVVPSSTASVFL 224
              I HE      + LS T   M  F S   A +GG ++A     + ++   + +S  S F+
Sbjct:   129 NIVHENHFVTANSLSST---MNGFMSIMGASLGG-IIAQ---SLHIEFAFLVNSL-SYFI 180

Query:   225 SILGI--ICVSRGWTENPKMAF-DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWIL 281
             S   I  +C+    T N K AF  D +  + TYI   K I  L+L           + +L
Sbjct:   181 SAYFIYSMCIPSHNTCNKKKAFLTDIKDGY-TYILQTKIILTLILVGISWGLIGGAYQLL 239

Query:   282 WAPTLVADGR-EVHLGLIFPSLLGAR-MLGSTVFPWLIS-GPSSFRTE---DCLLYAFVV 335
                T+ A+     ++G+++ ++ GA  M+GS +    IS      +      C L     
Sbjct:   240 L--TIYAEKIFHTNIGILY-TVQGAGLMIGSLLVNLYISHNKEKIKKAFGWACFLQGVFF 296

Query:   336 LGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPA 395
             LGF+ S      Q I  L  L C+     G+I+P    L   Y    + G + S   +  
Sbjct:   297 LGFILSS-----QLIFGLTTLLCM-RIAGGIIVPLDTTLLQTYTRENMIGKVFSFHYSIY 350

Query:   396 NAAILLFLLLRGFYRNIENAAMV 418
              + I L +L+ G    I +  M+
Sbjct:   351 GSLIQLSMLMTGSLLEILSPQMI 373


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.143   0.462    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      449       399   0.00097  117 3  11 21  0.40    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  627 (67 KB)
  Total size of DFA:  276 KB (2142 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.11u 0.08s 30.19t   Elapsed:  00:00:01
  Total cpu time:  30.11u 0.08s 30.19t   Elapsed:  00:00:01
  Start:  Thu May  9 18:31:22 2013   End:  Thu May  9 18:31:23 2013

GO:0006810 "transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019632001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (448 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	449
pfam05631	354	pfam05631, DUF791, Protein of unknown function (DU	1e-27

>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791)

 Score =  112 bits (282), Expect = 1e-27
 Identities = 87/307 (28%), Positives = 143/307 (46%), Gaps = 19/307 (6%)

Query: 47  SNSSSFVPFQRNFLLLFSLASVMEGLW----SVFGEYELVYYGVAKEQMMLLLCAGFSAA 102
           +    F  F+ N+LL++S+   M G W     V+  Y    YG +K  + +L  AGF ++
Sbjct: 27  NTDPKFNSFKNNYLLVYSMM--MAGDWLQGPYVYYLYS--SYGFSKGDIGILFIAGFGSS 82

Query: 103 LFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNF 162
           +  G+ +G ++D  G+K+ CL + IL++   + K    +  + +      +A+S+    F
Sbjct: 83  MLFGTIVGSLADKQGRKRACLTYCILYILSCITKHSPNYKVLMIGRFLGGIATSLLFSAF 142

Query: 163 ETWVAIEHEKQGQRQDILSDTFWLMTFFESA--ALIGGQVLANWLVGIDVKKGVVPSSTA 220
           E+W+  EH K+G     LS TF    F  +   A+I G + AN L        V P   A
Sbjct: 143 ESWLIAEHNKRGFSDQWLSTTFSKAAFLGNGLVAIISG-LFANLLADRFGFGPVAPFDAA 201

Query: 221 SVFLSILGIICVSRGWTENPKMAFD--DYRTSF---FTYIFGDKRIWLLVLAQACLQFSI 275
           + FL+I   I ++  W+EN     D  D +  F      I  D  ++ L L Q+  + S+
Sbjct: 202 ACFLAIGMAIILNT-WSENYGDPSDKKDLKEQFKVAAQAIASDPNVFCLGLVQSLFEGSM 260

Query: 276 ALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVV 335
             F  LW P L  +  E+  G IF + + A MLGS+V   L+      R E  +   F++
Sbjct: 261 YTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSVAARLLQ--RHLRVESYMQIVFLL 318

Query: 336 LGFVFSI 342
                S+
Sbjct: 319 SAVCLSL 325

This family consists of several eukaryotic proteins of unknown function. Length = 354

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	449
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	100.0
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.98
PRK03545	390	putative arabinose transporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.96
PRK12382	392	putative transporter; Provisional	99.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.96
PRK10642	490	proline/glycine betaine transporter; Provisional	99.96
PRK12307	426	putative sialic acid transporter; Provisional	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.96
TIGR00891	405	2A0112 putative sialic acid transporter.	99.96
PRK10054	395	putative transporter; Provisional	99.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
PRK11043	401	putative transporter; Provisional	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
PRK10133	438	L-fucose transporter; Provisional	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
PRK03699	394	putative transporter; Provisional	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
TIGR00893	399	2A0114 d-galactonate transporter.	99.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.95
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.95
PRK10504	471	putative transporter; Provisional	99.95
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
PRK15011	393	sugar efflux transporter B; Provisional	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.94
PLN00028	476	nitrate transmembrane transporter; Provisional	99.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
TIGR00898	505	2A0119 cation transport protein.	99.94
TIGR00895	398	2A0115 benzoate transport.	99.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.93
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.93
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.93
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.93
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.93
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.93
PRK11010	491	ampG muropeptide transporter; Validated	99.93
PRK11902	402	ampG muropeptide transporter; Reviewed	99.93
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.92
PRK09528	420	lacY galactoside permease; Reviewed	99.92
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.92
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
TIGR00901	356	2A0125 AmpG-related permease.	99.92
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.92
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.92
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.89
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.87
KOG2532	466	consensus Permease of the major facilitator superf	99.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.84
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.83
KOG2615	451	consensus Permease of the major facilitator superf	99.82
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.82
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.82
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.82
KOG0569	485	consensus Permease of the major facilitator superf	99.8
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.79
TIGR00805	633	oat sodium-independent organic anion transporter.	99.78
PRK09669	444	putative symporter YagG; Provisional	99.78
PRK09848	448	glucuronide transporter; Provisional	99.77
KOG2533	495	consensus Permease of the major facilitator superf	99.77
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.76
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.76
KOG0254	513	consensus Predicted transporter (major facilitator	99.75
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.74
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.69
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.69
PF13347	428	MFS_2: MFS/sugar transport protein	99.68
PRK10429	473	melibiose:sodium symporter; Provisional	99.68
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.65
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.62
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.62
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.6
PRK11462	460	putative transporter; Provisional	99.6
PTZ00207	591	hypothetical protein; Provisional	99.58
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.45
PRK15011	393	sugar efflux transporter B; Provisional	99.45
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.44
COG2211	467	MelB Na+/melibiose symporter and related transport	99.43
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.41
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.39
KOG2563	480	consensus Permease of the major facilitator superf	99.37
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.36
PRK09874	408	drug efflux system protein MdtG; Provisional	99.36
PRK05122	399	major facilitator superfamily transporter; Provisi	99.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.34
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.34
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.32
PRK09705	393	cynX putative cyanate transporter; Provisional	99.32
PRK12382	392	putative transporter; Provisional	99.3
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.29
PRK09528	420	lacY galactoside permease; Reviewed	99.26
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.26
PRK03699	394	putative transporter; Provisional	99.26
PRK03545	390	putative arabinose transporter; Provisional	99.25
PRK10489	417	enterobactin exporter EntS; Provisional	99.25
PRK03633	381	putative MFS family transporter protein; Provision	99.25
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.24
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.23
PRK10642	490	proline/glycine betaine transporter; Provisional	99.22
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.21
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.16
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.14
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.13
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.13
PRK10091	382	MFS transport protein AraJ; Provisional	99.11
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.08
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.08
PRK11010	491	ampG muropeptide transporter; Validated	99.07
TIGR00893	399	2A0114 d-galactonate transporter.	99.07
PRK09952	438	shikimate transporter; Provisional	99.06
PRK11902	402	ampG muropeptide transporter; Reviewed	99.05
TIGR00900	365	2A0121 H+ Antiporter protein.	99.05
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.03
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.02
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.02
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.01
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.98
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.97
TIGR00895	398	2A0115 benzoate transport.	98.97
PRK11663	434	regulatory protein UhpC; Provisional	98.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.97
PRK03893	496	putative sialic acid transporter; Provisional	98.96
PRK10054	395	putative transporter; Provisional	98.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.93
PRK12307	426	putative sialic acid transporter; Provisional	98.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.91
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.9
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.9
TIGR00891	405	2A0112 putative sialic acid transporter.	98.88
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.86
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.85
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.85
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.85
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.82
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.81
PRK11043	401	putative transporter; Provisional	98.8
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.77
PRK15075	434	citrate-proton symporter; Provisional	98.77
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.77
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.76
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.76
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.75
PRK10504	471	putative transporter; Provisional	98.74
TIGR00901	356	2A0125 AmpG-related permease.	98.73
PLN00028	476	nitrate transmembrane transporter; Provisional	98.7
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.69
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.68
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.65
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.64
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.64
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.63
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.63
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.62
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.61
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.61
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.6
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.6
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.59
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.57
PRK09669	444	putative symporter YagG; Provisional	98.56
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.55
COG0477	338	ProP Permeases of the major facilitator superfamil	98.54
PRK10133	438	L-fucose transporter; Provisional	98.53
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.53
KOG0569	485	consensus Permease of the major facilitator superf	98.51
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.5
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.5
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.5
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.5
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.49
PF13347	428	MFS_2: MFS/sugar transport protein	98.47
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.45
PRK09848	448	glucuronide transporter; Provisional	98.45
PF12832	77	MFS_1_like: MFS_1 like family	98.43
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.39
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.35
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.32
TIGR00898	505	2A0119 cation transport protein.	98.29
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.27
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.26
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.26
PRK10429	473	melibiose:sodium symporter; Provisional	98.24
KOG3626	735	consensus Organic anion transporter [Secondary met	98.2
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.13
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.11
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.11
PTZ00207	591	hypothetical protein; Provisional	98.04
TIGR00805	633	oat sodium-independent organic anion transporter.	98.04
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.92
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.92
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.92
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.89
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.87
COG2211	467	MelB Na+/melibiose symporter and related transport	97.85
PRK11462	460	putative transporter; Provisional	97.81
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.79
KOG0254	513	consensus Predicted transporter (major facilitator	97.77
KOG2532	466	consensus Permease of the major facilitator superf	97.75
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.68
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.61
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.44
KOG2615	451	consensus Permease of the major facilitator superf	97.4
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.36
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.36
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.27
KOG3762	618	consensus Predicted transporter [General function	97.15
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.13
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.02
KOG3762	618	consensus Predicted transporter [General function	96.97
KOG2533	495	consensus Permease of the major facilitator superf	96.85
KOG3810	433	consensus Micronutrient transporters (folate trans	96.68
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.54
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.39
KOG0637	498	consensus Sucrose transporter and related proteins	96.31
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.07
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.07
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	95.05
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.06
PRK03612	521	spermidine synthase; Provisional	93.59
KOG2563	480	consensus Permease of the major facilitator superf	92.83
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.8
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	92.48
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	92.27
PRK03612	521	spermidine synthase; Provisional	92.2
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	91.97
COG0477	338	ProP Permeases of the major facilitator superfamil	91.81
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.37
KOG2816	463	consensus Predicted transporter ADD1 (major facili	89.6
PF12832	77	MFS_1_like: MFS_1 like family	88.12
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	87.97
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	84.4
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	81.07

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=100.00  E-value=7e-46  Score=350.55  Aligned_cols=293  Identities=34%  Similarity=0.522  Sum_probs=262.5

Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHH
Q 013096           47 SNSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFF  126 (449)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~  126 (449)
                      ..+++|+++||+++.+|.+++.+||+|+|+++.+|+++|+++.|++.++..++.++++.+++.|.++||+||||.++..+
T Consensus        27 ~~~~~f~~Fqr~yl~vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~c  106 (354)
T PF05631_consen   27 STNPAFRRFQRKYLLVYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFC  106 (354)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH-HHhHHHHHHHHHHHHHH
Q 013096          127 ILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT-FFESAALIGGQVLANWL  205 (449)
Q Consensus       127 ~~~~~~~l~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~-~~~~~~~i~a~~lg~~l  205 (449)
                      ++|+++|++...+|++.|+++|++.|++++..++++|+|++.||++|++|+++++.+++.++ ..|++.+|+++++++++
T Consensus       107 ily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  107 ILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988 67888899999999999


Q ss_pred             hcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCCCc--c---hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 013096          206 VGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAF--D---DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWI  280 (449)
Q Consensus       206 ~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~--~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      .+.. +.|-..||..++++.+++.+++...|+|+.+++.  +   +..++.++.+++||+++.+++.++++++.+|.|++
T Consensus       187 ~~~~-~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVf  265 (354)
T PF05631_consen  187 ADWF-GFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVF  265 (354)
T ss_pred             HHHh-CCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhee
Confidence            8866 4455889999999988888888889999987622  1   12345678899999999999999999999999999


Q ss_pred             HhhhhhccCCCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 013096          281 LWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSI  342 (449)
Q Consensus       281 ~~~p~~~~~~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~  342 (449)
                      .|+|.+..++++.+.|++|+.+++++|+|+.+.+++..+  +.+.++.+...+.+.++++.+
T Consensus       266 lWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~--~~~~e~~l~~v~~~aa~~l~~  325 (354)
T PF05631_consen  266 LWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK--SLRPESLLRYVFAVAAVSLAI  325 (354)
T ss_pred             eeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHH
Confidence            999999866678899999999999999999999988874  566666666655555555443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.8e-47  Score=337.71  Aligned_cols=356  Identities=29%  Similarity=0.441  Sum_probs=306.8

Q ss_pred             CCCCcchhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHH
Q 013096           47 SNSSSFVPFQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFF  126 (449)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~  126 (449)
                      .++++|.++|.+++.+|++.+.+||+|+|+++.+|+++|+.+.|+|.++.+++...++++.+.|.++|+-|||+.++..+
T Consensus        30 ntsssFnsFknnyllVyslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtyc  109 (454)
T KOG4332|consen   30 NTSSSFNSFKNNYLLVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYC  109 (454)
T ss_pred             cCchhHHHHhhhHHHHHHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeeh
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHH-hhcCChhhHHHHHHHHH-HHhHHHHHHHHHHHHH
Q 013096          127 ILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHE-KQGQRQDILSDTFWLMT-FFESAALIGGQVLANW  204 (449)
Q Consensus       127 ~~~~~~~l~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~-~r~~~~~~l~~~~~~~~-~~~~~~~i~a~~lg~~  204 (449)
                      +.|.++|+...+|++-.|+++|++.|++++..++++|+|++.||. +|+++++++...++... ++|++.++++++.|+.
T Consensus       110 itYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~  189 (454)
T KOG4332|consen  110 ITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNL  189 (454)
T ss_pred             HHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999996 88999999999999766 6789999999999999


Q ss_pred             HhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCCC--cch---hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHH
Q 013096          205 LVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMA--FDD---YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFW  279 (449)
Q Consensus       205 l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  279 (449)
                      +.+.. +.|...||..++.+..++..++...|.|+.+++  +++   +.+...+.+.+|+++..++-++.+++..+|+|+
T Consensus       190 lvd~~-slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFV  268 (454)
T KOG4332|consen  190 LVDTF-SLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFV  268 (454)
T ss_pred             HHHHh-ccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheee
Confidence            98877 678889999998888888777888999998763  333   224557889999999999999999999999999


Q ss_pred             HHhhhhhccCCCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHh--c--cc-c-hhHHH
Q 013096          280 ILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIA--Y--DY-Q-EIGIL  353 (449)
Q Consensus       280 ~~~~p~~~~~~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~--~--~~-~-~~~~~  353 (449)
                      +.|+|.+-.+..+.+.|++|+.++.+.++|+.+..|+..+. +.+.+....+.+.+....+.++.  .  .+ + +....
T Consensus       269 FLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s  347 (454)
T KOG4332|consen  269 FLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSES  347 (454)
T ss_pred             eeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHH
Confidence            99999987666778899999999999999999998888642 33333333333333333333222  1  11 1 23346


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHH
Q 013096          354 VALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLL  404 (449)
Q Consensus       354 ~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~  404 (449)
                      +++||++..++|+.+|+++-+.++.+|++.|++.+.++|.+.|++++.++.
T Consensus       348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLy  398 (454)
T KOG4332|consen  348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY  398 (454)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe
Confidence            789999999999999999999999999999999999999999998876654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-30  Score=251.98  Aligned_cols=362  Identities=15%  Similarity=0.073  Sum_probs=263.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhH
Q 013096           65 LASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPS  143 (449)
Q Consensus        65 l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~  143 (449)
                      .....|.+..+.+|++.+|+|+|+.+.|.+.+.+..+..+++|+...++||+.||++++....++.++.+ +++++|++.
T Consensus        24 ~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~  103 (394)
T COG2814          24 AIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAV  103 (394)
T ss_pred             HHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3344567778899999999999999999999999999999999999999999999999999999999987 999999999


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHH
Q 013096          144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVF  223 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~  223 (449)
                      ++++|++.|++.|..++...+ +..+.    .|+++.+++.+.+..+..++.++|.++|.++.+.+   |||..|+....
T Consensus       104 Ll~aR~~~g~a~G~f~~i~~~-~a~~l----vpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~---GWR~~F~~ia~  175 (394)
T COG2814         104 LLLARALAGLAHGVFWSIAAA-LAARL----VPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF---GWRATFLAIAV  175 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHH----cCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh---hHHHHHHHHHH
Confidence            999999999999998877543 33333    45556677888877788888888989999988865   99999999888


Q ss_pred             HHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHH
Q 013096          224 LSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPS  301 (449)
Q Consensus       224 ~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~  301 (449)
                      +.+++.+..++..|.+..+++++....+..+++|+|+++.......+...+.|...++..|.+.+. + ++...+++...
T Consensus       176 l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~  255 (394)
T COG2814         176 LALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLA  255 (394)
T ss_pred             HHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHH
Confidence            888887777777771111111111112345788999998877777776666665545567877643 3 55567888889


Q ss_pred             HHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCC
Q 013096          302 LLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPN  381 (449)
Q Consensus       302 ~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~  381 (449)
                      ++++..+|+.+.||+.|   | +.++.+.....+.++.+..+.+..++.+..+....++++..+...+.......+.. +
T Consensus       256 ~Gv~~~~Gn~~gGrl~d---r-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p  330 (394)
T COG2814         256 FGIAGFIGNLLGGRLAD---R-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLA-P  330 (394)
T ss_pred             HHHHHHHHHHHHhhhcc---c-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-C
Confidence            99999999999999999   6 66777666655555555544444434333333333455554444444444444433 4


Q ss_pred             cchhHHHHhhHHHHHHHHHHHHHHhHH-hhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013096          382 ELRGGMISLSLAPANAAILLFLLLRGF-YRNIENAAMVAFAALGLFIAAGCMHVLKRWG  439 (449)
Q Consensus       382 ~~rg~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  439 (449)
                      |.+..+.+++....|+++..+...|+. .++.+.......++...+++.......++++
T Consensus       331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            678899999999999987666666554 4667776666666555555554444444433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.98  E-value=2.7e-28  Score=247.14  Aligned_cols=370  Identities=15%  Similarity=0.061  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHhhhh----hHHHHHHHHHhC---CChHH---HHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHH
Q 013096           60 LLLFSLASVMEGLW----SVFGEYELVYYG---VAKEQ---MMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILH  129 (449)
Q Consensus        60 ~~~~~l~~~~~~~~----~~~~~~l~~~~g---~s~~~---ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~  129 (449)
                      +....++.+.|+++    +...+.+.++++   .++.+   ++..++.++++..++++++|+++||+||||++..+.+++
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~  103 (432)
T PRK10406         24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMM  103 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            33344555555543    344456667774   45553   445667777788899999999999999999999999999


Q ss_pred             HHHHH-HHHhcchh--------HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHH
Q 013096          130 LFVGV-WKSITAHP--------SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQV  200 (449)
Q Consensus       130 ~~~~l-~~~~~s~~--------~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~  200 (449)
                      +++++ +++++|+.        .+++.|+++|++.|..++...+ ++.|..+++    +.++..+....+...+.++++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~p~~----~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406        104 CFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSAT-YMSEVAVEG----RKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHH-HHHHhCCCC----cccHHHHHHHHHHHHHHHHHHH
Confidence            98876 77888764        6999999999999998888765 566664332    2233333333333333344443


Q ss_pred             HHHHHhcc-----cccCCcchhHHHHHHHHHHHHHHHHhccccCCCCCcch-hhhhhhHhhhcChhHHHHHHHHHHHHHH
Q 013096          201 LANWLVGI-----DVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDD-YRTSFFTYIFGDKRIWLLVLAQACLQFS  274 (449)
Q Consensus       201 lg~~l~~~-----~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~  274 (449)
                      ++..+...     .+.+|||.+|.+++++.++.. +..+..||+++.++++ .++.+++++++||+.+...+...+....
T Consensus       179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  257 (432)
T PRK10406        179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSL  257 (432)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCchHHHhhhcccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33322110     013599999998777665543 3444566664432111 1123477888888877655444333222


Q ss_pred             HHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHH-HHh-cc-cc
Q 013096          275 IALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFS-IIA-YD-YQ  348 (449)
Q Consensus       275 ~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~-~~~-~~-~~  348 (449)
                      .++....|.|.++.+  + +..+.+...........++..+.+++.|   |+++|+.+.....+.++... ... .. .+
T Consensus       258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~D---r~grr~~~~~~~~~~~~~~~~~~~~~~~~~  334 (432)
T PRK10406        258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSD---KIGRRTSMLCFGSLAALFTVPILSALQNVS  334 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            233345688988754  2 2234455555555666777888899999   77777765544332222211 111 11 11


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHH-HHHHHHHhHHhhhcc-hhHHHHHHHHHHH
Q 013096          349 EIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAA-ILLFLLLRGFYRNIE-NAAMVAFAALGLF  426 (449)
Q Consensus       349 ~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~l  426 (449)
                      +....+...++..++.+...+....+.+|.+|++.|++++|+.+...+.. ....+...++.++.+ ....+.+.++..+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        335 SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            11111211222223344444556677889999999999999977655542 222333333444333 3333444444444


Q ss_pred             HHHHHHHHHHHh
Q 013096          427 IAAGCMHVLKRW  438 (449)
Q Consensus       427 ~~~~~~~~~~~~  438 (449)
                      ++.....+++++
T Consensus       415 i~~~~~~~l~~~  426 (432)
T PRK10406        415 VAFLVSLMLHRK  426 (432)
T ss_pred             HHHHHHHHhhhc
Confidence            444444444443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=1.8e-27  Score=237.86  Aligned_cols=336  Identities=14%  Similarity=0.052  Sum_probs=227.0

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHH
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANI  149 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~  149 (449)
                      .+..|+.|.+.+|+|.|++++|++.+.+.++..+++++.|+++||+||||++..+.+++.++++ +.+++|++++++.|+
T Consensus        26 ~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  105 (390)
T PRK03545         26 FVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRI  105 (390)
T ss_pred             HHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3455677888899999999999999999999999999999999999999999999999988876 888999999999999


Q ss_pred             HHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          150 CLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       150 l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      ++|++.+...+...+ ++.|.    .++++.++.++....+..++.+++|.+++.+.+..   |||+.|++..++.++..
T Consensus       106 ~~G~~~~~~~~~~~~-~i~~~----~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~---gw~~~f~~~~~~~~l~~  177 (390)
T PRK03545        106 GIAFAHAIFWSITAS-LAIRV----APAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL---GWRTTFLAIGGGALITL  177 (390)
T ss_pred             HHHHHHHHHHHHHHH-HHHHh----CChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh---cHHHHHHHHHHHHHHHH
Confidence            999999887766554 33333    34455677888777777888888999998887755   89999998766655554


Q ss_pred             HHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHH
Q 013096          230 ICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGAR  306 (449)
Q Consensus       230 ~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~  306 (449)
                      ....+..||.+++++ + ..+.++++++||+++.......+.....+.. ..+.|.+.++  + ++...+.......++.
T Consensus       178 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~  254 (390)
T PRK03545        178 LLLIKLLPLLPSEHS-G-SLKSLPLLFRRPALVSLYLLTVVVVTAHFTA-YSYIEPFVQQVAGLSENFATLLLLLFGGAG  254 (390)
T ss_pred             HHHHHhCCCCCCCCc-c-hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence            444444455432221 1 1223567888888765443333332222222 2344544443  2 3445677777778888


Q ss_pred             HHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhH
Q 013096          307 MLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGG  386 (449)
Q Consensus       307 ~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~  386 (449)
                      ++|+.+.+++.|   |+++++. ..+..+.+.+........++.+.......+++++.+...+...+...+..| +.|++
T Consensus       255 ~~g~~~~g~l~d---r~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~  329 (390)
T PRK03545        255 IIGSVLFSRLGN---RHPSGFL-LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDV  329 (390)
T ss_pred             HHHHHHHHHHhh---ccchhHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHH
Confidence            999999999999   6665443 333333333322221112233333344445566655555666677777766 67899


Q ss_pred             HHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHH
Q 013096          387 MISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAA  422 (449)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~  422 (449)
                      ++|..+...+.+...++.. |.+.+..+.+..+.+.+
T Consensus       330 ~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~  366 (390)
T PRK03545        330 AMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGA  366 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence            9998887777765555555 44556677665554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=4.7e-28  Score=239.62  Aligned_cols=324  Identities=14%  Similarity=0.036  Sum_probs=213.1

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHH
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKS-ITAHPSVWVANIC  150 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~~-~~s~~~l~~~R~l  150 (449)
                      ..+|..|.+.+|+|+|++|+|++.+.+++++.+++++.|+++||+|||++++.+......+.++.. .+|++++++.|++
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l   88 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL   88 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            357888899999999999999999999999999999999999999999987765555544434333 3799999999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      +|+|.+...+. .+ ...|    .+++++.+++.+....++.++.++++.++.++.+.+   |||+.|.+...+.++..+
T Consensus        89 ~G~g~~~~~~~-~~-~~~~----~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~---gWr~~f~~~~~l~~~~~~  159 (368)
T TIGR00903        89 AALGQPFLLNA-FA-PAAS----QIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG---GLQLLIIPIAAVAAAGII  159 (368)
T ss_pred             HHhHhHHHHHH-HH-HHHH----HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHHH
Confidence            99999863322 22 2233    245667788888888888888899999999988754   999999885555444444


Q ss_pred             HHHhccccCCCCCcc--h--hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCccchHHHHHHHHHH
Q 013096          231 CVSRGWTENPKMAFD--D--YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-GREVHLGLIFPSLLGA  305 (449)
Q Consensus       231 ~i~~~~~e~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~g~i~~~~~~~  305 (449)
                      +.++..||+++++++  +  ...++++++++||+++.+.+...+.....+.+ ..|.|.++++ +.+.+.+.....   .
T Consensus       160 ~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~L~~~g~s~~~~~~~~l---~  235 (368)
T TIGR00903       160 LVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNL-AIWLEAALRPAGLEDIAGDAVAL---A  235 (368)
T ss_pred             HHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCChHHHHHHHH---H
Confidence            455567876543211  1  11135788999999988877776666665544 6799999865 222223333222   2


Q ss_pred             HHHhhhHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcch
Q 013096          306 RMLGSTVFPWLISGPSSFRTEDCLLY-AFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELR  384 (449)
Q Consensus       306 ~~lg~~l~~~l~~~~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~r  384 (449)
                      ...|....+++.||.+|.++|+.... ...+.++.+.......+ ....+..+++.+++.+...+..+++.+|.+|+|.|
T Consensus       236 ~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r  314 (368)
T TIGR00903       236 ILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN-RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELH  314 (368)
T ss_pred             HHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc-cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhc
Confidence            22333334566664333333333222 22223333322232222 22223333444555666667788889999999999


Q ss_pred             hHHHHhhHHHHHHHHHHHHH-HhHHh
Q 013096          385 GGMISLSLAPANAAILLFLL-LRGFY  409 (449)
Q Consensus       385 g~~~~~~~~~~~~~~~~~~~-~g~~~  409 (449)
                      |++.|+.+...+++...++. .+.+.
T Consensus       315 gt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       315 GKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHh
Confidence            99999998877776533333 34444

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=4.1e-27  Score=237.03  Aligned_cols=328  Identities=12%  Similarity=0.058  Sum_probs=217.6

Q ss_pred             HhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHH
Q 013096           69 MEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVA  147 (449)
Q Consensus        69 ~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~  147 (449)
                      ...+..|.+|++.+++|.|+++.++..+.++++..+++++.|+++||+||||+++.+..++.++++ +..++|++.++++
T Consensus        31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~  110 (413)
T PRK15403         31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIA  110 (413)
T ss_pred             HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334567778888899999999999999999999999999999999999999999999999988776 7889999999999


Q ss_pred             HHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q 013096          148 NICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSIL  227 (449)
Q Consensus       148 R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~  227 (449)
                      |+++|++.+...+...+ .+.|    .+++++..+.++.......++++++|.+++.+.+..   |||+.|++..+..++
T Consensus       111 r~l~Gi~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~---gw~~~f~~~~~~~~i  182 (413)
T PRK15403        111 RFIQGTSICFIATVGYV-TVQE----AFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV---HWKVLFAIIAVMGLI  182 (413)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHH----hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence            99999998754433221 2222    245556677777777677778888999998887654   899999987766555


Q ss_pred             HHHHHHhccccCCCCCcch----hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC---CccchHHHHH
Q 013096          228 GIICVSRGWTENPKMAFDD----YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADG---REVHLGLIFP  300 (449)
Q Consensus       228 ~~~~i~~~~~e~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~g~i~~  300 (449)
                      +.+...+..||++++++++    ...++++.+++||+++...+...+.....+.+ ..+.|.++++.   ++.+.++.+.
T Consensus       183 ~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~-~~~~P~~l~~~~g~s~~~~gl~~~  261 (413)
T PRK15403        183 AFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSW-VAVSPVILIDAGGMTTSQFAWTQV  261 (413)
T ss_pred             HHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHhChHHHHHhcCCCHHHHHHHHH
Confidence            5544444567765432211    12345788999999987666555544444433 34578777642   3445777776


Q ss_pred             HHHHHHHHhhhHHHHHhcCCCCCCchhHHHHH--HHHHHHHHHHHh--cccchhHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 013096          301 SLLGARMLGSTVFPWLISGPSSFRTEDCLLYA--FVVLGFVFSIIA--YDYQEIGILVALFCLFHACVGLILPSLARLRT  376 (449)
Q Consensus       301 ~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~--~~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~  376 (449)
                      ....+.++++.+.+++.++  +. .+|.....  ....+..+....  ...++.+......++++++.+...|+..+...
T Consensus       262 ~~~~~~~i~~~l~~~~~~~--~~-~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al  338 (413)
T PRK15403        262 PVFGAVIVANAIVARFVKD--PT-EPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL  338 (413)
T ss_pred             HHHHHHHHHHHHHHHHhcc--CC-chhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            6667778888888887652  23 23332111  111222222111  11222222344556677888888888775332


Q ss_pred             ccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHh
Q 013096          377 MYVPNELRGGMISLSLAPANAAILLFLLLRGFY  409 (449)
Q Consensus       377 ~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~  409 (449)
                      +. ++..+|++.++.+.........+...+++.
T Consensus       339 ~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        339 FS-NNLPKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             cc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21 233478888887776655543333334444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=1.3e-26  Score=231.86  Aligned_cols=338  Identities=13%  Similarity=0.062  Sum_probs=228.9

Q ss_pred             HhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHH
Q 013096           69 MEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVA  147 (449)
Q Consensus        69 ~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~  147 (449)
                      .+....+++|++.+++|.|++|++...+...+...+++++.|+++||+||||+++.+.++.+++++ +..++|++.+++.
T Consensus        35 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (394)
T PRK10213         35 VEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIG  114 (394)
T ss_pred             HHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence            344455677888899999999999999999999999999999999999999999999999988776 7788999999999


Q ss_pred             HHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q 013096          148 NICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSIL  227 (449)
Q Consensus       148 R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~  227 (449)
                      |+++|++.+...+...+ ++.|.    +++++.++..+......+++.+++|.+++++.+.+   +||+.|++..++.++
T Consensus       115 r~l~G~~~g~~~~~~~~-~i~~~----~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~---gw~~~f~~~~~l~~~  186 (394)
T PRK10213        115 RACLGLALGGFWAMSAS-LTMRL----VPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI---GWRNVFNAAAVMGVL  186 (394)
T ss_pred             HHHHHHhhHHHHHHHHH-HHHHH----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHH
Confidence            99999999987776554 34443    45556777777777777788889999999988755   899999987665555


Q ss_pred             HHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHH
Q 013096          228 GIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGA  305 (449)
Q Consensus       228 ~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~  305 (449)
                      +.+.+.+..||++++++  ...++.+++++||+++...+...+.....+.+.....|.+.++ + +....+..+...+++
T Consensus       187 ~~l~~~~~~p~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~  264 (394)
T PRK10213        187 CIFWIIKSLPSLPGEPS--HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIA  264 (394)
T ss_pred             HHHHHHHHCCCCCcccc--cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            54444444566543221  1122355778888887654443333333333322234666543 3 344567878888888


Q ss_pred             HHHhhhHHHHHhcCCCCCCchhHHHHHHHH-HHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcch
Q 013096          306 RMLGSTVFPWLISGPSSFRTEDCLLYAFVV-LGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELR  384 (449)
Q Consensus       306 ~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~r  384 (449)
                      .++|+.+.+++.|   |.+ ++.+.....+ .+..+...... ++.+......++.+++.+...+...+..++..|+ ++
T Consensus       265 ~iig~~~~~~l~~---r~~-~~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~  338 (394)
T PRK10213        265 SFVGTSLSSFILK---RSV-KLALAGAPLVLAVSALVLTLWG-SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QA  338 (394)
T ss_pred             HHHHHHHHHHHHh---ccc-hhHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cH
Confidence            9999999999998   433 3333332222 22222222222 2233334455667778888888888888888884 45


Q ss_pred             hHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHH
Q 013096          385 GGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAA  422 (449)
Q Consensus       385 g~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~  422 (449)
                      ++..+......+.+...++.. |.+.+..+....+..+.
T Consensus       339 ~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~  377 (394)
T PRK10213        339 EKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSG  377 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHH
Confidence            666666555566655444444 44556566555444443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=3.5e-27  Score=236.39  Aligned_cols=357  Identities=14%  Similarity=0.078  Sum_probs=223.9

Q ss_pred             HHHHHHHHHhhhhhHHHHH-HHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh
Q 013096           61 LLFSLASVMEGLWSVFGEY-ELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI  138 (449)
Q Consensus        61 ~~~~l~~~~~~~~~~~~~~-l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~  138 (449)
                      ...++..++.++..|+++. +.+++|.|+.++|++.+...++..+++++.|+++||+||||+++.+.+++.++++ +..+
T Consensus        22 ~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~  101 (399)
T PRK05122         22 MFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLA  101 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHh
Confidence            3345667777788888876 4568999999999999999999999999999999999999999999888876543 3322


Q ss_pred             --------cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc
Q 013096          139 --------TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV  210 (449)
Q Consensus       139 --------~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~  210 (449)
                              .+++.+++.|+++|++.+...+...++. .|.    .++++.+++.+........+.++++.+++++.+.. 
T Consensus       102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-  175 (399)
T PRK05122        102 GLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWG-IGR----VGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG-  175 (399)
T ss_pred             hhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHH-Hhh----cChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc-
Confidence                    2567899999999999998777665533 232    23344555666655555666778888888887755 


Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 013096          211 KKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADG  290 (449)
Q Consensus       211 ~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  290 (449)
                        ||+..+.+.....++..+.. +..||.++++++   +.++++.+++  .+.......+.... +.....|.|.+..+.
T Consensus       176 --g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  246 (399)
T PRK05122        176 --GLAGLGLLIMLLALLGLLLA-RPRPAVPPVKGE---RLPFRRVLGR--VWPYGMGLALASIG-FGTIATFITLYYAAR  246 (399)
T ss_pred             --cHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcc---chhHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence              88888876555544433322 223332221111   1123333322  12111111111111 111233455554432


Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhH
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                      .....+.....+.++.+++..+.+++.|   |++++|.+..+..+.++........+ +.+..+...++.+++.+..+|.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~---r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~G~~~~~~~~~  322 (399)
T PRK05122        247 GWDGAALALTLFGVAFVGARLLFGNLIN---RLGGLRVAIVSLLVEILGLLLLWLAP-SPWMALIGAALTGFGFSLVFPA  322 (399)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhHHHHHHH
Confidence            1123455556667788889999999999   67777766655544444444333333 3333344455667778878888


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHH-HHHHHHhHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAI-LLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLK  436 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  436 (449)
                      ......+..|+|.||+++|+.+...+.+. +..++.|.+.+..+....+....+..+++......++
T Consensus       323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        323 LGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87778889999999999999888777664 3344445555666665554444433333333333333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=3.6e-27  Score=236.03  Aligned_cols=339  Identities=10%  Similarity=0.017  Sum_probs=222.5

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ..+|..|.+.+|+|+|..|++++.+.+.++..+++++.|+++||+||||+++.+..+++++.+ +++++|++.+++.|++
T Consensus        27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l  106 (393)
T PRK09705         27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALL  106 (393)
T ss_pred             ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence            356888999999999999999999999999999999999999999999999999999999887 8899999999999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      +|+|.+...+...+ ++.+    .++ ++.+++++....+...+..+++.+++++.++.  .+||..+.+.....++...
T Consensus       107 ~Gig~~~~~~~~~~-~~~~----~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        107 GGVGIGIIQAVMPS-VIKR----RFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             HHhHHHHHhhhhhH-HHHH----Hcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH
Confidence            99999987665543 3332    233 34566777766666666777777777776643  3788776653333332222


Q ss_pred             HHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHH
Q 013096          231 CVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARML  308 (449)
Q Consensus       231 ~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~l  308 (449)
                      ......++.+++++++ + ...++.+++++.+...+...+.... +.....|.|.++++ + +..+.|.....+.++.++
T Consensus       179 ~~~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~  255 (393)
T PRK09705        179 AWWWQSAREVASSHKT-T-TTPVRVVFTPRAWTLGVYFGLINGG-YASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAA  255 (393)
T ss_pred             HHHHHhcCCCccccCC-C-cCCcccccCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHH
Confidence            2221112221111111 1 1123456677777655544444333 33345678877764 2 344567778888889999


Q ss_pred             hhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCC-CcchhHH
Q 013096          309 GSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVP-NELRGGM  387 (449)
Q Consensus       309 g~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p-~~~rg~~  387 (449)
                      |+.+.+++.|   |.++++....+..+.+++.......+++... + ..++.+++.+...|.......+..| +++||+.
T Consensus       256 g~~~~g~l~~---r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~  330 (393)
T PRK09705        256 GALLMPAMAR---HQDRRKLLMLALVLQLVGFCGFIWLPLQLPV-L-WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKL  330 (393)
T ss_pred             HHHHHHHHHh---hccchHHHHHHHHHHHHHHHHHHHccchHHH-H-HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHH
Confidence            9999999999   6777776665544444333322222222111 1 2234466666777776666566664 6789999


Q ss_pred             HHhhHHHHHHHHHHHHHH-hHHhhhcc-hhHHHHHHHHHHH
Q 013096          388 ISLSLAPANAAILLFLLL-RGFYRNIE-NAAMVAFAALGLF  426 (449)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~l  426 (449)
                      +|+.+...+++...++.. |.+.+..+ +...+.+.++..+
T Consensus       331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~  371 (393)
T PRK09705        331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVV  371 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            999888777765445444 55556554 4554444443333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=1.3e-26  Score=231.87  Aligned_cols=363  Identities=14%  Similarity=0.064  Sum_probs=240.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH
Q 013096           58 NFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK  136 (449)
Q Consensus        58 ~~~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~  136 (449)
                      .++...++..++|++.....+.+.++++.++.+.+++.+.+.+++.+++|+.|+++||+||||+++++.++++++++ +.
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            34555667777787766666677789999999999999999999999999999999999999999999999987765 55


Q ss_pred             HhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcch
Q 013096          137 SITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVP  216 (449)
Q Consensus       137 ~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~  216 (449)
                      .+++.   ++.|+++|++.+...|+..+ ++.|.    +++++++++++..+.....+.++||.+++++.+.    .|+.
T Consensus        87 ~~~~~---~~~r~l~G~~~a~~~pa~~a-~i~~~----~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~  154 (393)
T PRK11195         87 FGIHP---LLAYGLVGIGAAAYSPAKYG-ILTEL----LPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEA  154 (393)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence            55553   78999999999998888765 44444    5666788899988877778889999999998763    4556


Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCCc--c-h------hhhhhhHhhhcChhHHHHHHHHHHHHHHHH---HHHHHhhh
Q 013096          217 SSTASVFLSILGIICVSRGWTENPKMAF--D-D------YRTSFFTYIFGDKRIWLLVLAQACLQFSIA---LFWILWAP  284 (449)
Q Consensus       217 ~f~~~~~~~~~~~~~i~~~~~e~~~~~~--~-~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p  284 (449)
                      ++.+.....+++.+ ..+..||++++++  + +      ..+++++.+++||.+........+......   .....|.|
T Consensus       155 ~~~i~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (393)
T PRK11195        155 ALAVCALIYLLAAL-FNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAP  233 (393)
T ss_pred             HHHHHHHHHHHHHH-HHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554443333322 3345566542211  1 1      112345677888876543332222222111   11122334


Q ss_pred             hhccCCCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 013096          285 TLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACV  364 (449)
Q Consensus       285 ~~~~~~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  364 (449)
                      ..+ +.++.+.|.+.....++.++|+.+.+++.|   |.+.++....+. +.++........+ +.+.......+.+++.
T Consensus       234 ~~l-g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~---~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        234 VAL-GITLNQPAYLQAVVAIGIAVGAGAAARLVT---LETVLRVLPAGI-LMGLVVLLMALQH-SLLPAYPLLILIGALG  307 (393)
T ss_pred             HHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccchHHHHH-HHHHHHHHHHHHh-HHHHHHHHHHHHHHhh
Confidence            333 224566888888888999999999999988   555555555443 2333222222222 2333334444667777


Q ss_pred             hhhhhHHHHHHhccCCCcc-hhHHHHhhHHHHHHHHHHHHHHhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 013096          365 GLILPSLARLRTMYVPNEL-RGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWG  439 (449)
Q Consensus       365 g~~~p~~~~~~~~~~p~~~-rg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  439 (449)
                      ++..+..++..++..|+|. +|++.++.+...+++...+....+..+..+......+.++++++........|.++
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALLWRWHR  383 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777788888766655 79999998888888755554443444566666666777777776655444444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=3.4e-27  Score=232.46  Aligned_cols=335  Identities=15%  Similarity=0.147  Sum_probs=238.2

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh
Q 013096           60 LLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI  138 (449)
Q Consensus        60 ~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~  138 (449)
                      +...++..+++.+..+..|....+++.++.+++++.+...++..+++++.|+++||+||||+++.+.++..+++. ....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            444556667777777777776678999999999999999999999999999999999999999998888776554 5555


Q ss_pred             c-----chhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCC
Q 013096          139 T-----AHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKG  213 (449)
Q Consensus       139 ~-----s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g  213 (449)
                      +     |++.+++.|+++|++.+...+..++ ++.|.    .++++.++.++.......++.+++|.+++++.+..   +
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---g  156 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQA-MLPDL----VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL---G  156 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc----CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---h
Confidence            5     9999999999999999987777655 33333    34556777888877788888889999999988765   8


Q ss_pred             cchhHHHHHHHHHHHHHHHHh-ccccCCCCCcc----h---hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013096          214 VVPSSTASVFLSILGIICVSR-GWTENPKMAFD----D---YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPT  285 (449)
Q Consensus       214 ~~~~f~~~~~~~~~~~~~i~~-~~~e~~~~~~~----~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  285 (449)
                      ||+.|++..+..+++.+.... ..||.++++++    +   ..++.++.+++||+++.......+...........+.|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (365)
T TIGR00900       157 IKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPY  236 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999998766554444333322 23333221111    1   112446778888888766554444443333332356777


Q ss_pred             hccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 013096          286 LVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHA  362 (449)
Q Consensus       286 ~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  362 (449)
                      +.++  + ++.+.+.......++.+++..+.+++.|   |.++++....+..+.++++....+.+++.+......++.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (365)
T TIGR00900       237 VQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGR---YFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGV  313 (365)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Confidence            7654  2 4456787777788888999999999998   67767666655544554444443333223344455566778


Q ss_pred             HhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH
Q 013096          363 CVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL  405 (449)
Q Consensus       363 ~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~  405 (449)
                      +.+...+...++.+|..|+|+||++.|+.+...+++...++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~  356 (365)
T TIGR00900       314 GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL  356 (365)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999999999999999988877765444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=9.2e-27  Score=233.51  Aligned_cols=335  Identities=16%  Similarity=0.121  Sum_probs=225.2

Q ss_pred             HHHHHHhhhhhHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcch
Q 013096           64 SLASVMEGLWSVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAH  141 (449)
Q Consensus        64 ~l~~~~~~~~~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~  141 (449)
                      ++...+.....|+.+..+ +++|.|+.++|.+.+...+...+.+++.|+++||+|||+++..+.++..++++ +...+++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~   99 (400)
T PRK11646         20 MLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEP   99 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccH
Confidence            344455555667765544 58999999999999998899888899999999999999999999999988776 6778899


Q ss_pred             hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHH
Q 013096          142 PSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTAS  221 (449)
Q Consensus       142 ~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~  221 (449)
                      +.+++.|+++|++.+...+..+++. .|.    .++++.++.++.......++..++|.+++++. .+   +||+.|++.
T Consensus       100 ~~l~~~~~l~g~~~~~~~~~~~~~~-~~~----~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~---g~~~~f~~~  170 (400)
T PRK11646        100 WLLWLSCILSGLGGTLFDPPRTALV-IKL----IRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY---DFRLVCATG  170 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hHHHHHHHH
Confidence            9999999999999887766655533 332    34556778888877787888889999999887 44   889999886


Q ss_pred             HHHHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--CCccchHHHH
Q 013096          222 VFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--GREVHLGLIF  299 (449)
Q Consensus       222 ~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~g~i~  299 (449)
                      ....++..+......||.+.++.++..+++++++++||+++...+....+... +.....+.|.+.++  +++...+..+
T Consensus       171 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~g~l~  249 (400)
T PRK11646        171 AVLFVLAAAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLTLTGYYML-AVQVMLMLPIMVNDIAGSPSAVKWMY  249 (400)
T ss_pred             HHHHHHHHHHHHHhCCcccccccchhhHHHHHHHHcCchHHHHHHHHHHHHHH-HHHHHHhhhhhHHhhcCCchHHHHHH
Confidence            65544443333333455322221222334577888998877654433222221 22223467887665  2345567666


Q ss_pred             HHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccC
Q 013096          300 PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYV  379 (449)
Q Consensus       300 ~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~  379 (449)
                      +...+....+....+++.||  |++.++.+..+..+.++.+......+ +.+......++++.+.+...|..+++..+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~  326 (400)
T PRK11646        250 AIEACLSLTLLYPIARWSEK--RFRLEHRLMAGLLIMSLSMFPIGMVS-NLQQLFTLICLFYIGSIIAEPARETLSASLA  326 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHccHHHHHHhcC
Confidence            66555544444455666653  55555555555444444444333332 2233333344566677777888889999999


Q ss_pred             CCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhh
Q 013096          380 PNELRGGMISLSLAPANAAILLFLLL-RGFYRN  411 (449)
Q Consensus       380 p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~  411 (449)
                      |+++||+++|+.+...+++...++.. |.+.+.
T Consensus       327 p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        327 DARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             CcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            99999999999988877775555544 444343

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=2e-26  Score=231.60  Aligned_cols=330  Identities=14%  Similarity=0.076  Sum_probs=218.9

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHH
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANI  149 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~  149 (449)
                      .+..|..+.+.+++|.|+.+++...+...++..+++++.|+++||+||||+++.+..+..++++ +..+++++.+++.|+
T Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  109 (406)
T PRK15402         30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRF  109 (406)
T ss_pred             hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            3455667778889999999999999999999999999999999999999999999888888776 778899999999999


Q ss_pred             HHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          150 CLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       150 l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      ++|++.+...+...+ .+.|.    +++++..+..+........+..++|.+++++.+..   +||+.|++.++..+++.
T Consensus       110 l~G~~~~~~~~~~~~-~i~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---~w~~~~~~~~~~~~~~~  181 (406)
T PRK15402        110 LQGIGLCFIGAVGYA-AIQES----FEEADAIKITALMANVALLAPLLGPLVGAALIHVL---PWRGMFVLFAALAALSF  181 (406)
T ss_pred             HHHhHhhhHHHHHHH-HHHHH----hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CccHHHHHHHHHHHHHH
Confidence            999998876655433 23333    33334445555544444556678888888887754   88999987666655554


Q ss_pred             HHHHhccccCCCCCcc----hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHH
Q 013096          230 ICVSRGWTENPKMAFD----DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSL  302 (449)
Q Consensus       230 ~~i~~~~~e~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~  302 (449)
                      +...+..||+++++++    +...++++.+++||+++...+...+.....+.+ ..+.|.++.+  + ++.+.+......
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~g~~~~~~g~~~~~~  260 (406)
T PRK15402        182 FGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAW-IALSPVILISGEQLSSYEYGLLQVPV  260 (406)
T ss_pred             HHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHhCCCHHHHHHHHHHH
Confidence            4444456766433211    122345778899998887665444443322222 3346766543  2 334466665556


Q ss_pred             HHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHhhhhhhHHHHHHhcc
Q 013096          303 LGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAY----DYQEIGILVALFCLFHACVGLILPSLARLRTMY  378 (449)
Q Consensus       303 ~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~  378 (449)
                      .++..+|..+.+++.|   |+++++.+..+....++++.....    ..++.+......++.+++.+...|..+..... 
T Consensus       261 ~~~~~~g~~~~g~l~~---r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-  336 (406)
T PRK15402        261 FGALIAGNLTLARLTS---RRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-  336 (406)
T ss_pred             HHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-
Confidence            6678889999999999   777777666555444333332221    11223334455556677777777766665543 


Q ss_pred             CCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcc
Q 013096          379 VPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIE  413 (449)
Q Consensus       379 ~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~  413 (449)
                      .++++||++.+..+...+.+...+... +.+.+..+
T Consensus       337 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        337 SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            355889999999887776654334333 44444443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=2.7e-26  Score=230.49  Aligned_cols=326  Identities=17%  Similarity=0.136  Sum_probs=219.0

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHH
Q 013096           73 WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICL  151 (449)
Q Consensus        73 ~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~  151 (449)
                      .++..|.+.+++|.|+++++.+.+...++..+++++.|+++||+||||++..+.++..+..+ +.+++|++.+++.|+++
T Consensus        34 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  113 (406)
T PRK11551         34 AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLT  113 (406)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999888877665 77889999999999999


Q ss_pred             HhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHH
Q 013096          152 SLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIIC  231 (449)
Q Consensus       152 Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~  231 (449)
                      |++.+...+...+ ++.|.    +++++.++.++....+..++..+++.++..+.+..   +||+.|++...+.++..+.
T Consensus       114 G~~~~~~~~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        114 GVGLGGALPNLIA-LTSEA----VGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA---AWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HhhHHHHHHHHHH-HHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---CHHHHHHHHHHHHHHHHHH
Confidence            9999887766544 34443    34445666777766666677778888887776644   8999998765544444333


Q ss_pred             HHhccccCCCCC-c---chhhhhhhHhhhcCh---hHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHH
Q 013096          232 VSRGWTENPKMA-F---DDYRTSFFTYIFGDK---RIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSL  302 (449)
Q Consensus       232 i~~~~~e~~~~~-~---~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~  302 (449)
                      .....||+++++ +   ++.+++..+.+++++   +.+...... +.....+.....|.|.+.++ + ++...+......
T Consensus       186 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~  264 (406)
T PRK11551        186 LMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISY-FFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAF  264 (406)
T ss_pred             HHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHH
Confidence            444457754321 1   111111223333332   222222211 11122223345578887764 2 345577777778


Q ss_pred             HHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCc
Q 013096          303 LGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNE  382 (449)
Q Consensus       303 ~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~  382 (449)
                      .++.+++..+.+++.|   |+++++.+.......++++......+ +.+......++.+++.+...+...++.+|.+|++
T Consensus       265 ~~~~~~~~~~~g~l~d---r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  340 (406)
T PRK11551        265 NIGGALGSLLIGALMD---RLRPRRVVLLIYAGILASLAALAAAP-SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ  340 (406)
T ss_pred             HHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh
Confidence            8888999999999999   77777766554444444433333333 2222333334445555556777888889999999


Q ss_pred             chhHHHHhhHHHHHHHHHHHHHH-hHHhhh
Q 013096          383 LRGGMISLSLAPANAAILLFLLL-RGFYRN  411 (449)
Q Consensus       383 ~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~  411 (449)
                      +||++.|+.+...+++...++.. |.+.+.
T Consensus       341 ~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        341 VRGTGVGAAVAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             hhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence            99999999888777765555544 444443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=8.1e-27  Score=246.40  Aligned_cols=378  Identities=16%  Similarity=0.114  Sum_probs=243.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhh----hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH
Q 013096           53 VPFQRNFLLLFSLASVMEGL----WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL  128 (449)
Q Consensus        53 ~~~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~  128 (449)
                      .+.++..+.++.++.+.+++    .++.+|.+..++|+++.+.+++.++.+++.+++++++|+++||+|||+++++++++
T Consensus       162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil  241 (742)
T TIGR01299       162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV  241 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            45566665566666666654    45566777789999999999999999999999999999999999999999999988


Q ss_pred             HHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 013096          129 HLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG  207 (449)
Q Consensus       129 ~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~  207 (449)
                      ++++++ +.++++++.++++|+++|++.+...+...+ ++.|.    .+.+..++.++.......++.++++.++.++.+
T Consensus       242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~-~isE~----~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS-YFAEF----LAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888765 778899999999999999999988777654 55554    344455666666655666666667766665554


Q ss_pred             cc----------ccCCcchhHHHHHHHHHHHHHHHHhccccCCCC---C-c-ch------------hh------------
Q 013096          208 ID----------VKKGVVPSSTASVFLSILGIICVSRGWTENPKM---A-F-DD------------YR------------  248 (449)
Q Consensus       208 ~~----------~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~---~-~-~~------------~~------------  248 (449)
                      .+          ...+||+.|.+.++..++.++ ..+..||+++.   + + ++            .+            
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll-~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~  395 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIG-ALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN  395 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHH
Confidence            32          013688888887766655543 33456887531   0 0 00            00            


Q ss_pred             ----------------h--------------------hhhHhhhcCh---hHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 013096          249 ----------------T--------------------SFFTYIFGDK---RIWLLVLAQACLQFSIALFWILWAPTLVAD  289 (449)
Q Consensus       249 ----------------~--------------------~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  289 (449)
                                      .                    ..++.+++.+   +++.+.+++++.... |+....|.|.++.+
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~-yygl~~w~P~~~~~  474 (742)
T TIGR01299       396 HIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFG-YYGLSVWFPDMIKH  474 (742)
T ss_pred             HHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence                            0                    0122233321   223333333333333 44457799976321


Q ss_pred             C-----------------------------------C-----------------c-------------------------
Q 013096          290 G-----------------------------------R-----------------E-------------------------  292 (449)
Q Consensus       290 ~-----------------------------------~-----------------~-------------------------  292 (449)
                      .                                   .                 .                         
T Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  554 (742)
T TIGR01299       475 LQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDT  554 (742)
T ss_pred             HHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhh
Confidence            0                                   0                 0                         


Q ss_pred             -----------------------------------c-----chHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHH
Q 013096          293 -----------------------------------V-----HLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYA  332 (449)
Q Consensus       293 -----------------------------------~-----~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~  332 (449)
                                                         .     ..........++.++|.++.+++.|   |+++++.+..+
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~D---r~GRr~~l~~~  631 (742)
T TIGR01299       555 LFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMD---KIGRLRMLAGS  631 (742)
T ss_pred             hccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHH
Confidence                                               0     0011122344677889999999999   89988888777


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhc
Q 013096          333 FVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNI  412 (449)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~  412 (449)
                      .++.+++.++..+..+. ...++..++++++.+..++...++.+|.+|++.||+++|+......++.+.++.+++...+.
T Consensus       632 ~~lsai~~ll~~~~~s~-~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       632 MVLSCISCFFLSFGNSE-SAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             HHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            76666665544443322 22333445556666677888889999999999999999999988888766666654433233


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013096          413 ENAAMVAFAALGLFIAAGCMHVLKRWGKQ  441 (449)
Q Consensus       413 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  441 (449)
                      +....+.++++..++++++..++++++++
T Consensus       711 ~~~~pf~i~a~~lll~~ll~~~LPET~~~  739 (742)
T TIGR01299       711 TKAAPILFASAALACGGLLALKLPDTRGQ  739 (742)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            33334444444444444444455555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=2.5e-26  Score=230.59  Aligned_cols=357  Identities=15%  Similarity=0.058  Sum_probs=228.4

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhCCChHH-----HHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH
Q 013096           60 LLLFSLASVMEGLWSVFGEYELVYYGVAKEQ-----MMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV  134 (449)
Q Consensus        60 ~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~-----ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l  134 (449)
                      +...++....+.+..|++|.+.+++|.++.+     ++.+.+...+...+++++.|+++||+|||++++.+.+...++++
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   99 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV   99 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence            3444556666677888988888999998654     47888889999999999999999999999999998888877765


Q ss_pred             -HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCC
Q 013096          135 -WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKG  213 (449)
Q Consensus       135 -~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g  213 (449)
                       +...+|++.+++.|++.|++.+. .+...+ .+.+.    .++++.++..+.......++.+++|.+++.+.+..   +
T Consensus       100 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~  170 (408)
T PRK09874        100 LMGLAQNIWQFLILRALLGLLGGF-VPNANA-LIATQ----VPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY---G  170 (408)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhhh-HHhHHH-HHHHh----cCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---C
Confidence             66778999999999999998654 344333 23332    34445566677666666677778888888887755   8


Q ss_pred             cchhHHHHHHHHHHHHHHHHhccccCCCC-Ccch-hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--
Q 013096          214 VVPSSTASVFLSILGIICVSRGWTENPKM-AFDD-YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--  289 (449)
Q Consensus       214 ~~~~f~~~~~~~~~~~~~i~~~~~e~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--  289 (449)
                      ||+.|.+.....++..+...+..||++++ ++++ .+.+...+.+++++.+.......+...........+.|.+..+  
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (408)
T PRK09874        171 LRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELA  250 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999876665555444444445554322 1111 1112233456677665422222222111122222234444432  


Q ss_pred             CCcc----chHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhh
Q 013096          290 GREV----HLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVG  365 (449)
Q Consensus       290 ~~~~----~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g  365 (449)
                      ++..    ..+.+.....++.+++....+++.|   |+++++.+..+....++......... +.+.......+.+++.+
T Consensus       251 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~d---r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~  326 (408)
T PRK09874        251 GNVSNIAFISGMIASVPGVAALLSAPRLGKLGD---RIGPEKILITALIFSVLLLIPMSFVQ-TPLQLGILRFLLGAADG  326 (408)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchhHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhhH
Confidence            1111    1344445556677788888999999   77877776655544443333322222 23333444456677888


Q ss_pred             hhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHh-HHhhhcchhHHHHHHHHHHHHHH
Q 013096          366 LILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLR-GFYRNIENAAMVAFAALGLFIAA  429 (449)
Q Consensus       366 ~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~  429 (449)
                      ...|...+...+..|++.||+.++..+...+++...++..+ .+.+..++...+...++..+++.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~  391 (408)
T PRK09874        327 ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNA  391 (408)
T ss_pred             hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            88888888888889999999999998887777765565554 44455666555554444444333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=3e-26  Score=228.48  Aligned_cols=364  Identities=11%  Similarity=-0.018  Sum_probs=227.2

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcch
Q 013096           63 FSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAH  141 (449)
Q Consensus        63 ~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~  141 (449)
                      .++....+....|..|.+.+|+|.|+++++++.+...++..+++++.|+++||+||||++..+..+.+++.+ +..++|+
T Consensus        12 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~   91 (382)
T PRK10091         12 TFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSY   91 (382)
T ss_pred             HHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            334455566677888888899999999999999999999999999999999999999999999999988776 7889999


Q ss_pred             hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHH
Q 013096          142 PSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTAS  221 (449)
Q Consensus       142 ~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~  221 (449)
                      +.+++.|+++|++.+...+...+ .+.|.    .++++.++.++....+..++..++|.+++++.+..   +||+.|.+.
T Consensus        92 ~~l~~~r~l~G~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---gwr~~f~~~  163 (382)
T PRK10091         92 LMLAIGRLVSGFPHGAFFGVGAI-VLSKI----IKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF---SWRYTFLLI  163 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHH-HHHHh----CChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc---cHHHHHHHH
Confidence            99999999999999876655432 44443    23344556677666666777778888888887654   899999987


Q ss_pred             HHHHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHH
Q 013096          222 VFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIF  299 (449)
Q Consensus       222 ~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~  299 (449)
                      ....++..+...+..||.+++++++ .++.+ +.++|++.+.......+.+...+.......|.+.+. + ++.+.+...
T Consensus       164 ~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~  241 (382)
T PRK10091        164 AVFNIAVLASIYFWVPDIRDEAKGG-LREQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIM  241 (382)
T ss_pred             HHHHHHHHHHHHHhCCCCCcccccC-HHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            6655444444444567654322211 12223 345666666543333332222222222223333221 3 445577777


Q ss_pred             HHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhh-hHHHHHHhcc
Q 013096          300 PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLIL-PSLARLRTMY  378 (449)
Q Consensus       300 ~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~-p~~~~~~~~~  378 (449)
                      ....++.+++..+.+++.|   |+++++.+..+..+.++.........++.+..+...++.+.+.+... |.......+.
T Consensus       242 ~~~~~~~~ig~~~~g~l~~---r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  318 (382)
T PRK10091        242 MLVGLGMVLGNLLSGRLSG---RYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNA  318 (382)
T ss_pred             HHHHHHHHHHhHHHheecc---ccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence            7888889999999999999   77777776665554444433222211122222223333333332223 3333344454


Q ss_pred             CCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhh-cchhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013096          379 VPNELRGGMISLSLAPANAAILLFLLL-RGFYRN-IENAAMVAFAALGLFIAAGCMHVLKRWGKQ  441 (449)
Q Consensus       379 ~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  441 (449)
                      .|++.++++.+  +...+++...++.. |.+.+. .++...+...++..++.+.+.....++|+|
T Consensus       319 ~~~~~~~~~~~--~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (382)
T PRK10091        319 KGGELLGAAGG--QIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQ  381 (382)
T ss_pred             CcchHHHHHHH--HHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            55566665533  44445554445544 444553 456565555544444444455555544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=7e-26  Score=225.74  Aligned_cols=372  Identities=12%  Similarity=0.030  Sum_probs=232.9

Q ss_pred             hhhHHHHHH---HHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHH
Q 013096           54 PFQRNFLLL---FSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHL  130 (449)
Q Consensus        54 ~~~~~~~~~---~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~  130 (449)
                      +++|.++.+   .++......+..|+.|.+.+++|.|+.|+|++.+...++..+++++.|+++||+||||++..+.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444544433   23444445567888888888999999999999999999999999999999999999999999999988


Q ss_pred             HHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          131 FVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       131 ~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      ++++ +..++|++.+++.|+++|++.+...+..++++..+     .++++.++.++.......++..++|.+++.+.+..
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633         83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCS-----GTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            8776 77889999999999999999998777665544322     23344567777777777777888888888876532


Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 013096          210 VKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD  289 (449)
Q Consensus       210 ~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  289 (449)
                         .++.++........+. .....+.+|+++++  + +..+++++++||+.+..... .+.....+.....+.|.+.++
T Consensus       158 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lp~~~~~  229 (381)
T PRK03633        158 ---MSVLPWVTGLVLAAIL-PLLFTRILNQQAEN--H-DSTSIWPMLKLRQARLGVNG-CIISGIVLGSLYGLMPLYLNH  229 (381)
T ss_pred             ---cchHHHHHHHHHHHHH-HHHHhcccCCCCCC--C-CCCCHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence               2333333322222111 12222223322111  1 11235567788776643221 112111122223457877654


Q ss_pred             -C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhh
Q 013096          290 -G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLI  367 (449)
Q Consensus       290 -~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~  367 (449)
                       + ++...|.......++.+++....+++.|   |+++++.+..+..+.+++..... .. .  .......+.+++.+..
T Consensus       230 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~~~~~~l~~~~~~~~~~~~~~~-~~-~--~~~~~~~l~g~~~~~~  302 (381)
T PRK03633        230 QGMSDASIGFWMALLVSAGILGQWPIGRLAD---RFGRLLVLRVQVFVVILGSIAML-SQ-A--AMAPALFILGAAGFTL  302 (381)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHH---HcCcHHHHHHHHHHHHHHHHHHh-hh-H--HHHHHHHHHHHHHHhH
Confidence             2 3345677777777788899999999999   78877776655444443332211 11 1  1122333445445556


Q ss_pred             hhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 013096          368 LPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWGKQPYQNW  446 (449)
Q Consensus       368 ~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  446 (449)
                      .|..++...|..|++++++..+......+++...++.. |.+.++.+....+.+.+...  .......+|++|++++...
T Consensus       303 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~--l~~~~~~~~~~~~~~~~~~  380 (381)
T PRK03633        303 YPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVS--FIYLLMLLRKAGHTPTPVA  380 (381)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH--HHHHHHHHhccCCCCCccc
Confidence            78888888899998888887777766666665555544 44556555544333322222  2223455566555555444


Q ss_pred             c
Q 013096          447 H  447 (449)
Q Consensus       447 ~  447 (449)
                      |
T Consensus       381 ~  381 (381)
T PRK03633        381 H  381 (381)
T ss_pred             C
Confidence            4

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=4.7e-26  Score=227.75  Aligned_cols=344  Identities=16%  Similarity=0.086  Sum_probs=216.2

Q ss_pred             HHHHHHHhhhhhHHHHHH-HHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH----HHH
Q 013096           63 FSLASVMEGLWSVFGEYE-LVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV----WKS  137 (449)
Q Consensus        63 ~~l~~~~~~~~~~~~~~l-~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l----~~~  137 (449)
                      .++.....++..|++|.. .+|+|.|+.++|++.+...++..+++++.|+++||+||||+++.+.+...++++    +..
T Consensus        24 ~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~  103 (392)
T PRK12382         24 VFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAI  103 (392)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhc
Confidence            344455556677877653 468999999999999999999999999999999999999999988777665432    111


Q ss_pred             -----hcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 013096          138 -----ITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKK  212 (449)
Q Consensus       138 -----~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~  212 (449)
                           .+|++.+++.|+++|++.+...++..++. .|.    .++++.+++++..+.....+..++|.+++++.+..   
T Consensus       104 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~-~~~----~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~---  175 (392)
T PRK12382        104 LPVSAPFKFALLVVGRLILGFGESQLLTGALTWG-LGL----VGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF---  175 (392)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh----CCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence                 35789999999999999987776654433 333    23344566676666666667778888888887654   


Q ss_pred             CcchhHHHHHHHHHHHHHHHHhccccCCCCCc-chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 013096          213 GVVPSSTASVFLSILGIICVSRGWTENPKMAF-DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADGR  291 (449)
Q Consensus       213 g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  291 (449)
                      ||+..+.+.....++... ..+..||.+++++ ++..++.++.+++ +...     ..+... .+..+..|.|.+.++..
T Consensus       176 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~l~~~-~~~~~~~~~~~~~~~~~  247 (392)
T PRK12382        176 GFAALALTTMVLPLLAWA-FNGTVRKVPAHAGERPSLWSVVGLIWK-PGLG-----LALQGV-GFAVIGTFVSLYFASKG  247 (392)
T ss_pred             ChHHHHHHHHHHHHHHHH-HHHhccCCCCCcccCchHHHHHHHHHH-hHHH-----HHHHHH-HHhHHHHHHHHHHHhcC
Confidence            888777665444333322 2233344332211 1111111222211 1111     111111 12222335555554422


Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHH
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSL  371 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~  371 (449)
                      ..+.+.....+.++.+++....+++.|   |++++|.+..+..+.++........+ +.+..+....+.+++.+...|..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~g~l~~---r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~  323 (392)
T PRK12382        248 WAMAGFTLTAFGGAFVLMRVLFGWMPD---RFGGVKVAIVSLLVETVGLLLLWLAP-TAWVALAGAALTGAGCSLIFPAL  323 (392)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHH---hcCCCeehHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHhHHHHH
Confidence            223455555666777889999999999   67777766655544444443333333 33333445556677777778888


Q ss_pred             HHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHHHHHH
Q 013096          372 ARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAALGLF  426 (449)
Q Consensus       372 ~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~l  426 (449)
                      .+...+..|+++||+++|+.+...+++...++.. |.+.+..++...+.+.++..+
T Consensus       324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~  379 (392)
T PRK12382        324 GVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAV  379 (392)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            8888889999999999999888777764444443 555566666555544443333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.96  E-value=3e-26  Score=230.72  Aligned_cols=357  Identities=13%  Similarity=0.098  Sum_probs=227.3

Q ss_pred             hhhhHHHHHHHHHHHHHhhh----hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH
Q 013096           53 VPFQRNFLLLFSLASVMEGL----WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL  128 (449)
Q Consensus        53 ~~~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~  128 (449)
                      ||.+++.....++....+.+    .+...+.+.+|+|+|+++++++.++.+++..+++++.|+++||+||||++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         3 KKLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            34455555555555555443    34555677789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 013096          129 HLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG  207 (449)
Q Consensus       129 ~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~  207 (449)
                      ++++++ +++++|++++++.|+++|++.+...+...+ ++.|.    +++++.++..+.......++.++++.+++++.+
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~~~~~----~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILL-YLTFW----FPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHH-HHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998876 778899999999999999999987766543 33443    455556777777777777778888888887763


Q ss_pred             cc---ccCCcchhHHHHHHHHHHHHHHHHhccccCCCCC----cchh----------------------h-----hhhhH
Q 013096          208 ID---VKKGVVPSSTASVFLSILGIICVSRGWTENPKMA----FDDY----------------------R-----TSFFT  253 (449)
Q Consensus       208 ~~---~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~----~~~~----------------------~-----~~~~~  253 (449)
                      ..   ..+|||+.|.+.++..++..++..+..||++++.    +++.                      +     +..++
T Consensus       158 ~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (412)
T TIGR02332       158 LDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLR  237 (412)
T ss_pred             CCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHH
Confidence            20   0248999999866555444344444567765321    0000                      0     01133


Q ss_pred             hhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhH-
Q 013096          254 YIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDC-  328 (449)
Q Consensus       254 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~-  328 (449)
                      .++ ++.++...+...+.....+. +..|.|.++++ +   +....+.......++..+|..+.+++.|   |+++++. 
T Consensus       238 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~d---r~~~r~~~  312 (412)
T TIGR02332       238 EIF-TPAIMLYTLAYFCLTNTLSA-INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSD---RLKERKHH  312 (412)
T ss_pred             Hhc-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhc---ccCccHHH
Confidence            333 35555554444444333333 45689998875 2   2344566677777888999999999999   6665553 


Q ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHH-HhH
Q 013096          329 LLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLL-LRG  407 (449)
Q Consensus       329 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~-~g~  407 (449)
                      ........++.+.+.....++ ...+...++..++.....+.......|..|+++||+++|+.+...+++...++. .|.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~  391 (412)
T TIGR02332       313 TALPYLFAAAGWLLASATDHN-LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI  391 (412)
T ss_pred             HHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            333333333333222222221 111212222222222223333444467789999999999998888776544443 345


Q ss_pred             Hhhhcc-hhHHHHH
Q 013096          408 FYRNIE-NAAMVAF  420 (449)
Q Consensus       408 ~~~~~~-~~~~~~~  420 (449)
                      ..+..+ +...+.+
T Consensus       392 i~~~~g~~~~~~~~  405 (412)
T TIGR02332       392 LKDATGSFNSGLWF  405 (412)
T ss_pred             ccccCCCCchhHHH
Confidence            555543 5544433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=3.2e-26  Score=230.93  Aligned_cols=368  Identities=13%  Similarity=0.034  Sum_probs=241.4

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH---H
Q 013096           62 LFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK---S  137 (449)
Q Consensus        62 ~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~---~  137 (449)
                      ..++..+++++..+..|.+.++++.++.+.|++.+...++..+++++.|+++||+||||+++.+..+.+++.+ ..   +
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~  104 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAF  104 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHH
Confidence            3456667777778888777788888999999999999999999999999999999999999887776665443 22   1


Q ss_pred             --hcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcc
Q 013096          138 --ITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVV  215 (449)
Q Consensus       138 --~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~  215 (449)
                        .++++.+++.|+++|++.+...++..+ .+.|.    .++++.++..+.......++.+++|.+++.+.+..   +|+
T Consensus       105 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~---~~~  176 (417)
T PRK10489        105 LPEPSLLAIYLLGLWDGFFGSLGVTALLA-ATPAL----VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG---GVA  176 (417)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhh-hhhhc----cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH---hhH
Confidence              467899999999999998876655444 23332    34445666777766667777888999999887754   788


Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCCC--cc---hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-
Q 013096          216 PSSTASVFLSILGIICVSRGWTENPKMA--FD---DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-  289 (449)
Q Consensus       216 ~~f~~~~~~~~~~~~~i~~~~~e~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  289 (449)
                      +.|.+..+..+++.+.. ...||+++++  ++   +..+++++.+++||.++...+...+.. ... ....|.|.+.++ 
T Consensus       177 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~p~~~~~~  253 (417)
T PRK10489        177 WNYGLAAAGTFITLLPL-LRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLT-MAS-AVRVLYPALADEV  253 (417)
T ss_pred             HHHHHHHHHHHHHHHHH-HhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHH-HHH-hHHHhhHHHHHhc
Confidence            88887665554444333 3455543321  11   112245677888887665443332221 112 223467777665 


Q ss_pred             -C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhh
Q 013096          290 -G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLI  367 (449)
Q Consensus       290 -~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~  367 (449)
                       + +....|++.+...++.++|..+.+++.|   |.++++.+..+..+.++.+......+ +.+......++++++.+..
T Consensus       254 ~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~---~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~  329 (417)
T PRK10489        254 WQMGAAQIGLLYAAVPLGAALGALTSGWLAH---SARPGLLMLLSTLGSFLAVGLFGLMP-MWILAVLCLALFGYLSAIS  329 (417)
T ss_pred             cCCChhHhHHHHHHHHHHHHHHHHHHHHhhh---ccCcchHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHH
Confidence             2 3445788888888888999999999988   44455555555444444444333332 3333344555566666766


Q ss_pred             hhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchh-HHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 013096          368 LPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENA-AMVAFAALGLFIAAGCMHVLKRWGKQPYQ  444 (449)
Q Consensus       368 ~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  444 (449)
                      .+...++.++..|++.||+++|+.+...+.+...++.. |.+.+..+.. .....+++.++++.......++.|++..+
T Consensus       330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (417)
T PRK10489        330 SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQT  408 (417)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            67777888999999999999999887777665444444 5555655643 33344445555454444444554443333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.96  E-value=3e-26  Score=236.11  Aligned_cols=324  Identities=10%  Similarity=0.002  Sum_probs=228.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhH
Q 013096           65 LASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPS  143 (449)
Q Consensus        65 l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~  143 (449)
                      +......+.+...|.+.+|+|.++++++++.+.+.++..+++++.|+++||+|||++++.+.+++.++++ |+.++|++.
T Consensus        17 ~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~   96 (495)
T PRK14995         17 PVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASW   96 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            3334444556777899999999999999999999999999999999999999999999999999998876 889999999


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHH
Q 013096          144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVF  223 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~  223 (449)
                      ++++|+++|+|.+...+...+.+..+.    .++++.++.++.......++..++|.+++++.+..   +||+.|++...
T Consensus        97 li~~r~l~G~g~~~~~~~~~~~l~~~~----~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~---gwr~~f~i~~~  169 (495)
T PRK14995         97 LIATRALLAIGAAMIVPATLAGIRATF----TEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF---YWGSVFLINVP  169 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---ChHHHHHHHHH
Confidence            999999999999887665433222211    24456777888887778888899999999998865   89999998776


Q ss_pred             HHHHHHHHHHhccccCCCCCc--chhh--------------------h------------------------------hh
Q 013096          224 LSILGIICVSRGWTENPKMAF--DDYR--------------------T------------------------------SF  251 (449)
Q Consensus       224 ~~~~~~~~i~~~~~e~~~~~~--~~~~--------------------~------------------------------~~  251 (449)
                      +.++..++..+..||++++++  .+..                    +                              ++
T Consensus       170 ~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p  249 (495)
T PRK14995        170 IVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRP  249 (495)
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            665555545445565432211  0100                    0                              00


Q ss_pred             h--HhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCch
Q 013096          252 F--TYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTE  326 (449)
Q Consensus       252 ~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~  326 (449)
                      .  .+++|||.+....+...+.....+.+ ..+.|.++++  + ++.+.|.......++..+++.+.+++.|   |++++
T Consensus       250 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~---r~g~~  325 (495)
T PRK14995        250 MIDMRLFTHRIILSGVVMAMTAMITLVGF-ELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS---RLGLR  325 (495)
T ss_pred             CcCHHHhCCcccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCch
Confidence            0  14566666655444333333333332 3356766553  3 4567888888888889999999999999   77777


Q ss_pred             hHHHHHHHHHHHHHHHHhc-c-cchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH
Q 013096          327 DCLLYAFVVLGFVFSIIAY-D-YQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI  399 (449)
Q Consensus       327 ~~l~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~  399 (449)
                      +.+..+..+.+++...... . ..+.+......++.+++.|+..+.......+..|+|++|++.++.++..+++.
T Consensus       326 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~  400 (495)
T PRK14995        326 LVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGA  400 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence            7666555444443332221 1 12223334455667888888888888888889999999999988877666653

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.96  E-value=7.7e-26  Score=232.84  Aligned_cols=326  Identities=14%  Similarity=0.118  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHHHhhhh----hHHHHHHHHHhCCChHH----HHH--HHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHH
Q 013096           57 RNFLLLFSLASVMEGLW----SVFGEYELVYYGVAKEQ----MML--LLCAGFSAALFVGSFLGMISDLIGQKKVCLIFF  126 (449)
Q Consensus        57 ~~~~~~~~l~~~~~~~~----~~~~~~l~~~~g~s~~~----ig~--l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~  126 (449)
                      ++......++.+.|+++    +...+.+.++++.+..+    ++.  .+++++++..+++++.|+++||+|||+++..+.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            34455556777777654    34445566677543321    222  257778899999999999999999999999999


Q ss_pred             HHHHHHHH-HHHhcchhH--------HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHH
Q 013096          127 ILHLFVGV-WKSITAHPS--------VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIG  197 (449)
Q Consensus       127 ~~~~~~~l-~~~~~s~~~--------l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~  197 (449)
                      ++++++++ +++++|+++        +++.|+++|++.|..++...+ ++.|..+++    +.++..+....+..++.++
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~-~~~e~~p~~----~Rg~~~~~~~~~~~~G~~l  169 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASI-FVAEYSPDR----KRGFMGSWLDFGSIAGFVL  169 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHH-HHHHhCCCC----CCcHHHHHHHHHHHHHHHH
Confidence            99999886 889999875        899999999999998887654 566664322    2333444444444444444


Q ss_pred             HHHHHHHHhc----c-cccCCcchhHHHHHHHHHHHHHHHHhccccCCCCC-c-----c--h-----hhhhhhHhhhc-C
Q 013096          198 GQVLANWLVG----I-DVKKGVVPSSTASVFLSILGIICVSRGWTENPKMA-F-----D--D-----YRTSFFTYIFG-D  258 (449)
Q Consensus       198 a~~lg~~l~~----~-~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~-~-----~--~-----~~~~~~~~l~~-~  258 (449)
                      ++.+...+..    . ...+|||++|+++++..+++. ++.+..||++... .     +  +     ..+.+++++++ +
T Consensus       170 g~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (490)
T PRK10642        170 GAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGL-YLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKH  248 (490)
T ss_pred             HHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHh
Confidence            4443332211    0 013699999999776555443 3445677765311 0     0  0     01123555554 3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHH
Q 013096          259 KRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVV  335 (449)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~  335 (449)
                      ++.+.......+.....++....|.|.++++  + +....+.......++..++..+.+++.|   |+++++.+..+..+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d---r~grr~~~~~~~~~  325 (490)
T PRK10642        249 WRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD---RFGRRPFVILGSVA  325 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHH
Confidence            3333322222222222333445688988753  2 2223344455556777888999999999   78887766554432


Q ss_pred             HH-HHHHHHh-cccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhh
Q 013096          336 LG-FVFSIIA-YDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLS  391 (449)
Q Consensus       336 ~~-~~l~~~~-~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~  391 (449)
                      .. .++.... ...++....+...++.+++.+...+....+..|.+|++.||+++|+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~  383 (490)
T PRK10642        326 LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA  383 (490)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHH
Confidence            22 1111111 11122223333444445555555566667778899999999998864

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.96  E-value=6.2e-26  Score=229.32  Aligned_cols=350  Identities=13%  Similarity=0.031  Sum_probs=223.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhh----hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH
Q 013096           53 VPFQRNFLLLFSLASVMEGL----WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL  128 (449)
Q Consensus        53 ~~~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~  128 (449)
                      ++.|++.+....+..+.+++    ..+..|.+.+++|+|+.+.+.+.+...++..+++++.|+++||+|||+++..+.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            35555555454455544443    34556677789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 013096          129 HLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG  207 (449)
Q Consensus       129 ~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~  207 (449)
                      .+++++ +.++++++.+++.|+++|++.+...+.... ++.|.    .++++.++..+....+..++.++++.+.+.+.+
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~  167 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACAST-YAVES----WPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE  167 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHh----CCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence            988776 778899999999999999999877766544 44443    344456667777666777778888888887766


Q ss_pred             ccccCCcchhHHHHHHHHHHHHHHHHhccccCCCCC-----cch-h-------hhhhhHhhhcChhHHHHHHHHHH--HH
Q 013096          208 IDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMA-----FDD-Y-------RTSFFTYIFGDKRIWLLVLAQAC--LQ  272 (449)
Q Consensus       208 ~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~-----~~~-~-------~~~~~~~l~~~~~~~~~~~~~~~--~~  272 (449)
                      ..   +||++|.+.....++.. ......||+++.+     +++ .       .+..+++++++|+++........  ..
T Consensus       168 ~~---~w~~~f~i~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (426)
T PRK12307        168 AY---GWRAAFFVGLLPVLLVI-YIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSI  243 (426)
T ss_pred             cC---CHHHHHHHHHHHHHHHH-HHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            54   89999987654433332 2222345543210     000 0       01246678888776543221111  11


Q ss_pred             HHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchh
Q 013096          273 FSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEI  350 (449)
Q Consensus       273 ~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~  350 (449)
                      ......+..|.|.+.++ + ++...+.......++.++|..+.+++.|   |+++++.+..+..+.++.+.......++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~d---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (426)
T PRK12307        244 FGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCAD---RIGLKKTFSIGLLMSFLFIFPLFRIPQDN  320 (426)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            11111234467777654 2 3344566667777888999999999999   77777766655544433332222211111


Q ss_pred             HHHHHHHHHHHH--HhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchh
Q 013096          351 GILVALFCLFHA--CVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENA  415 (449)
Q Consensus       351 ~~~~~~~~l~~~--~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~  415 (449)
                      .. ....++++.  ......+.......|.+|++.||+++|+.+...+++...++.. |.+.+..+..
T Consensus       321 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~  387 (426)
T PRK12307        321 YL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLG  387 (426)
T ss_pred             HH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHH
Confidence            11 112222222  1112234455667899999999999998877777665445444 4444556543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=1.2e-25  Score=227.98  Aligned_cols=354  Identities=10%  Similarity=-0.003  Sum_probs=221.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhh----hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH
Q 013096           53 VPFQRNFLLLFSLASVMEGL----WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL  128 (449)
Q Consensus        53 ~~~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~  128 (449)
                      +..++..+...++..+.+++    .++..|.+.+++|+|+++++.+.+...++..+++++.|+++||+|||+++.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            34444444444455544442    35667888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 013096          129 HLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG  207 (449)
Q Consensus       129 ~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~  207 (449)
                      .+++++ +..++|++.+++.|+++|++.|...+...+ ++.|.    +++++.++.++.......++.+++|.+++++.+
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~-~~~~~----~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663         98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAK-LLTAW----YSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHH-HHHHh----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888776 778899999999999999999876665543 33333    455566777887777777888888888888877


Q ss_pred             ccccCCcchhHHHHHHHHHHHHHHHHhccccCCCC----C----c-------chh--hhhhhH-----hhhcChhHHHHH
Q 013096          208 IDVKKGVVPSSTASVFLSILGIICVSRGWTENPKM----A----F-------DDY--RTSFFT-----YIFGDKRIWLLV  265 (449)
Q Consensus       208 ~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~----~----~-------~~~--~~~~~~-----~l~~~~~~~~~~  265 (449)
                      .+   |||+.|.+.++..++..+......+|++.+    +    +       ++.  .+.+++     .+++|++++...
T Consensus       173 ~~---gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (434)
T PRK11663        173 HY---GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLS  249 (434)
T ss_pred             cc---cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHH
Confidence            54   899999876554333322222233443211    0    0       000  001122     256677777665


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCC--CchhHH-HH---HHHHH
Q 013096          266 LAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSF--RTEDCL-LY---AFVVL  336 (449)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~--~~~~~l-~~---~~~~~  336 (449)
                      +...+.+.. +..+..|.|.++.+  + +..+.+.....+.++.++|..+.+++.|   |+  ++|+.. ..   +....
T Consensus       250 ~~~~~~~~~-~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~d---r~~~~~r~~~~~~~~~~~~~~  325 (434)
T PRK11663        250 FSYVLVYVV-RAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSD---KLFNGNRGPMNLIFAAGILLS  325 (434)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHH---HhccCCccHHHHHHHHHHHHH
Confidence            544333332 33345688888753  2 3345566667777888999999999999   44  222221 11   11111


Q ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHH-HHhHHhhhcchh
Q 013096          337 GFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFL-LLRGFYRNIENA  415 (449)
Q Consensus       337 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~  415 (449)
                      .+.+..  ....+.......++..+++.............|..|++.||++.|+.+...+++...++ +.|.+.+..+.+
T Consensus       326 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~  403 (434)
T PRK11663        326 VGSLWL--MPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWT  403 (434)
T ss_pred             HHHHHH--cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccH
Confidence            111111  11112112222222222221111222334567888999999999999988888754444 345555666665


Q ss_pred             HHHHH
Q 013096          416 AMVAF  420 (449)
Q Consensus       416 ~~~~~  420 (449)
                      ..+..
T Consensus       404 ~~f~~  408 (434)
T PRK11663        404 GFFVV  408 (434)
T ss_pred             HHHHH
Confidence            54433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=5.8e-26  Score=231.45  Aligned_cols=382  Identities=9%  Similarity=0.020  Sum_probs=220.2

Q ss_pred             cchhhhHHHHHHHHHHHHHhhhh----hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHH
Q 013096           51 SFVPFQRNFLLLFSLASVMEGLW----SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFF  126 (449)
Q Consensus        51 ~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~  126 (449)
                      .+++.++..+...++.....++.    ++..|.+.++ |+|+++.++..+...++..+++++.|+++||+|||++++.+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~  100 (452)
T PRK11273         22 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL  100 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHH
Confidence            34555555544444544444432    3445555566 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHh----cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHH-HHHHH
Q 013096          127 ILHLFVGV-WKSI----TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAAL-IGGQV  200 (449)
Q Consensus       127 ~~~~~~~l-~~~~----~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~-i~a~~  200 (449)
                      ++++++++ +.+.    ++++.+++.|+++|++.+...+.... .+.|    .+++++.++..+....+..++. +.+|+
T Consensus       101 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~-~~~~----~~~~~~r~~~~~~~~~~~~~g~~~~~~l  175 (452)
T PRK11273        101 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVH----WWSQKERGGIVSVWNCAHNVGGGLPPLL  175 (452)
T ss_pred             HHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHH-HHHH----hCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            88887765 4443    47888999999999998876655433 2222    2455556667776555555443 34454


Q ss_pred             HHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCC----Cc-c-----------h-h----hhhh-hHhhhcC
Q 013096          201 LANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKM----AF-D-----------D-Y----RTSF-FTYIFGD  258 (449)
Q Consensus       201 lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~----~~-~-----------~-~----~~~~-~~~l~~~  258 (449)
                      ++..+...   .+||+.|++...+.++..++.....||++++    ++ +           + .    .++. .+.+++|
T Consensus       176 ~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (452)
T PRK11273        176 FLLGMAWF---NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPN  252 (452)
T ss_pred             HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcC
Confidence            43333222   2889999876554444333333334443321    00 0           0 0    0111 1346788


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCC--CchhHHH-HH
Q 013096          259 KRIWLLVLAQACLQFSIALFWILWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSF--RTEDCLL-YA  332 (449)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~--~~~~~l~-~~  332 (449)
                      +.++...+...+.+...+. ...|.|.++++.   +..+.+.......++..++..+.+++.|   |+  ++++... ..
T Consensus       253 ~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~d---r~~~~r~~~~~~~~  328 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD---KVFRGNRGATGVFF  328 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHccCCcchHHHHH
Confidence            8888766655555544333 355889888642   2344566666667778889999999999   44  2222221 11


Q ss_pred             HHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH-HHHH-HHhHHh
Q 013096          333 FVVLGFVFSIIAYD-YQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI-LLFL-LLRGFY  409 (449)
Q Consensus       333 ~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~-~~~~-~~g~~~  409 (449)
                      ..+..+.+...... ..+.+.........+.......+.......|.+|++.||+++|+.+...+++. ..++ +.|...
T Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        329 MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            11222222211111 11222222222222322211222334456789999999999999887766653 3333 335555


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 013096          410 RNIENAAMVAFAALGLFIAAGCMHVLKRWGKQPYQN  445 (449)
Q Consensus       410 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  445 (449)
                      +..++...+..+....+++++.....++.+|+.+||
T Consensus       409 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (452)
T PRK11273        409 DFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHHEE  444 (452)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            666665555433333333434444455554444444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.96  E-value=2.2e-25  Score=228.14  Aligned_cols=357  Identities=15%  Similarity=0.191  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH----
Q 013096           59 FLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV----  134 (449)
Q Consensus        59 ~~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l----  134 (449)
                      ++....++.+++|++....+-+..+..-|+.+++++..+..++.+++++++|.++||++|||+++.+.++..+.++    
T Consensus        15 lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~   94 (524)
T PF05977_consen   15 LWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAV   94 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            4556678899999987766555556677899999999999999999999999999999999999998777654331    


Q ss_pred             HHH--hcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 013096          135 WKS--ITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKK  212 (449)
Q Consensus       135 ~~~--~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~  212 (449)
                      +..  ..+.+.+++.-++.|++.+...|+.++ .++|.    .+++++.++.+..+....++-++||.+||.+....   
T Consensus        95 l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A-~ip~l----V~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~---  166 (524)
T PF05977_consen   95 LAFFGLLSPWLLLILTFLLGIGSAFFNPAWQA-IIPEL----VPKEDLPAANALNSISFNIARIIGPALGGILVAFF---  166 (524)
T ss_pred             HHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----ccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH---
Confidence            122  247899999999999999998888766 45555    35567888888877777777888999999988765   


Q ss_pred             CcchhHHHHHHHHHHHHHHHHhccccCCCC---Ccc---hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013096          213 GVVPSSTASVFLSILGIICVSRGWTENPKM---AFD---DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTL  286 (449)
Q Consensus       213 g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  286 (449)
                      |-.+.|.+.++..++....+. .++++.++   +++   +..+++++.+.++|.+....+..++++.....+ ....|.+
T Consensus       167 G~~~~f~inalsfl~~i~~l~-~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~-~aLlPl~  244 (524)
T PF05977_consen  167 GAAAAFLINALSFLISILALL-RWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAV-WALLPLF  244 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHH-HHhhhHH
Confidence            666788876655444433333 34332221   111   123467888888887765544333333222222 2236777


Q ss_pred             ccC---CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 013096          287 VAD---GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHAC  363 (449)
Q Consensus       287 ~~~---~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~  363 (449)
                      .++   +++..+|++.++.++|.++|+.+.+++.+   +++.++.+..+.++.++++....+.+ +.+.....+++.+++
T Consensus       245 a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~---~~~~~~lv~~~~~~~a~~~~~lal~~-~~~~~~~~l~l~G~~  320 (524)
T PF05977_consen  245 ARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRR---RLSSRRLVLLASLLFALALLLLALSP-SFWLALIALFLAGAA  320 (524)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCcchhhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHH
Confidence            653   34567899999999999999999999887   67777766666666666655555544 344445566667777


Q ss_pred             hhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHHHHHHHHH
Q 013096          364 VGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAALGLFIAA  429 (449)
Q Consensus       364 ~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~~  429 (449)
                      ........++..++..|++.||+++|++++..+.+...+.+. |.+.+..+.+..+..+++.+++..
T Consensus       321 ~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~  387 (524)
T PF05977_consen  321 WIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA  387 (524)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            777778888999999999999999999998777765444444 555566776665555554444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.96  E-value=4.3e-26  Score=225.43  Aligned_cols=337  Identities=12%  Similarity=0.005  Sum_probs=219.8

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHH
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANI  149 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~  149 (449)
                      ...+++.|.+.+++|+|+++++++.++..++..+++++.|+++||+|||++++.+.++..++++ +++++|++.+++.|+
T Consensus        20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (377)
T TIGR00890        20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYG   99 (377)
T ss_pred             hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888899999999999999999999999999999999999999999999999888776 788999999999999


Q ss_pred             HHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          150 CLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       150 l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      ++|++.+...+.... .+.|.    ++ ++.++..+....+..++.++++.+.+.+.+..   +||+.|.+..++.++..
T Consensus       100 ~~g~~~~~~~~~~~~-~~~~~----~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~  170 (377)
T TIGR00890       100 LASAGVGIAYGIALN-TAVKW----FP-DKRGLASGIIIGGYGLGSFILSPLITSVINLE---GVPAAFIYMGIIFLLVI  170 (377)
T ss_pred             HHhHHHHHHHHhHHH-HHHHH----cC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHH
Confidence            999999876655432 22222    12 23455666666666666555555555555543   89999988665544443


Q ss_pred             HHHHhccccCCCCC---c-c-hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHH
Q 013096          230 ICVSRGWTENPKMA---F-D-DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSL  302 (449)
Q Consensus       230 ~~i~~~~~e~~~~~---~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~  302 (449)
                      +...+..+|+++++   + + +..+...++.++||+.+.......+........ ..+.|.+.++ + ++.+.+......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  249 (377)
T TIGR00890       171 VLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLL-IGLYKPYGQSLGLSDGFLVLAVSIS  249 (377)
T ss_pred             HHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            33333333332211   1 1 111224567888888776554333332222222 2223334333 2 233456667777


Q ss_pred             HHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCC
Q 013096          303 LGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQ-EIGILVALFCLFHACVGLILPSLARLRTMYVPN  381 (449)
Q Consensus       303 ~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~  381 (449)
                      .++.+++..+.+++.|   |+++++.+..+..+.+++.......++ +....+...++.+++.|...+...++.+|.+|+
T Consensus       250 ~~~~~~~~~~~g~l~d---r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~  326 (377)
T TIGR00890       250 SIFNGGGRPFLGALSD---KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP  326 (377)
T ss_pred             HHHHHHHHHHHHHHHH---HHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhh
Confidence            7888899999999999   777777666555544444433333221 111222333445566666666667788899999


Q ss_pred             cchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHH
Q 013096          382 ELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAF  420 (449)
Q Consensus       382 ~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~  420 (449)
                      ++||++.|+.+...+++...++.. |...+..+....+..
T Consensus       327 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~  366 (377)
T TIGR00890       327 ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIV  366 (377)
T ss_pred             hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Confidence            999999999988877765445444 444555665544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.96  E-value=1.7e-26  Score=236.29  Aligned_cols=328  Identities=12%  Similarity=0.038  Sum_probs=203.6

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH------HHHhcchhHHHH
Q 013096           73 WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV------WKSITAHPSVWV  146 (449)
Q Consensus        73 ~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l------~~~~~s~~~l~~  146 (449)
                      .++..|.+.+|+|+|+.|.|++.+.+++++.+++++.|+++||+|||+++..+.++.++.+.      +..++|++.+++
T Consensus        48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  127 (467)
T PRK09556         48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIA  127 (467)
T ss_pred             hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            45667888899999999999999999999999999999999999999999888777665442      233689999999


Q ss_pred             HHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH
Q 013096          147 ANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSI  226 (449)
Q Consensus       147 ~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~  226 (449)
                      .|+++|++.+...+...+ ++.|.    +++++.+++++....+..++.++++.+..++.....+.+||..|.+...+.+
T Consensus       128 ~r~l~G~~~~~~~~~~~~-~i~~~----~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~  202 (467)
T PRK09556        128 LWALSGFFQSTGGPCSYS-TITRW----TPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIAL  202 (467)
T ss_pred             HHHHHHHHHhccchHHHH-HHHHH----cCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHH
Confidence            999999999877776544 44444    3444455556655555566666777776665543112258888876444333


Q ss_pred             HHHHHHHhccccCCCC------C-----c---ch----hh----hhh-hHhhhcChhHHHHHHHHHHHHHHHHHHHHHhh
Q 013096          227 LGIICVSRGWTENPKM------A-----F---DD----YR----TSF-FTYIFGDKRIWLLVLAQACLQFSIALFWILWA  283 (449)
Q Consensus       227 ~~~~~i~~~~~e~~~~------~-----~---~~----~~----~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (449)
                      +..+..++..++++++      +     .   ++    .+    ++. .+++++||+++...+...+.+...+. ...|.
T Consensus       203 ~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~  281 (467)
T PRK09556        203 IIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIG-IDNWS  281 (467)
T ss_pred             HHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            2222222222222110      0     0   00    00    011 23367888888777666555544333 46789


Q ss_pred             hhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHH--HHHhcccchhHHHHHHHH
Q 013096          284 PTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVF--SIIAYDYQEIGILVALFC  358 (449)
Q Consensus       284 p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~  358 (449)
                      |.++++.   +..+.+.......++..+|..+.+++.|   |+++++.......+..+..  ...... ++........+
T Consensus       282 p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD---r~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  357 (467)
T PRK09556        282 PVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSD---LANGRRALVACIALALIIFTLGVYQHA-TSEYMYLASLF  357 (467)
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCchHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence            9887642   3344566666677788999999999999   6776665443322222211  111121 22222223333


Q ss_pred             HHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHH-H-HHHHHHHhHHhh
Q 013096          359 LFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANA-A-ILLFLLLRGFYR  410 (449)
Q Consensus       359 l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~-~-~~~~~~~g~~~~  410 (449)
                      +.+++.............|..|++.||++.|+.+...++ + .....+.|.+.+
T Consensus       358 ~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        358 ALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            333322111122234556999999999999999887775 4 333444465556

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.96  E-value=5.6e-26  Score=227.31  Aligned_cols=353  Identities=12%  Similarity=0.076  Sum_probs=223.5

Q ss_pred             hhhHHHHHHHHHHHHHhh----hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHH
Q 013096           54 PFQRNFLLLFSLASVMEG----LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILH  129 (449)
Q Consensus        54 ~~~~~~~~~~~l~~~~~~----~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~  129 (449)
                      +.|++.+....++...+.    +.++..+.+.+++|.|+.+++++.+...++..+++++.|+++||+|||++++.+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   87 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF   87 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            334444444444444443    4566777777899999999999999999999999999999999999999999998888


Q ss_pred             HHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 013096          130 LFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGI  208 (449)
Q Consensus       130 ~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~  208 (449)
                      +++++ +.+++|++.+++.|+++|++.+...+...+ ++.|.    .++++.++..+....+..++.++++.+++.+.+.
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891        88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAA-YVIES----WPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHH-HHHHh----CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88776 778899999999999999999887776554 33443    3444566677776767777778888888887765


Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhccccCCCCCc----chhhhhhhHhhhcC-------------------hh----H
Q 013096          209 DVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAF----DDYRTSFFTYIFGD-------------------KR----I  261 (449)
Q Consensus       209 ~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~----~~~~~~~~~~l~~~-------------------~~----~  261 (449)
                      . +.+||+.|.+.+...++..+ .....||+++.++    ++..++..++..++                   ++    +
T Consensus       163 ~-~~~w~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (405)
T TIGR00891       163 W-GDGWRALFFISILPIIFALW-LRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTF  240 (405)
T ss_pred             c-CccHHHHHHHHHHHHHHHHH-HHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHH
Confidence            4 23499999886665554433 3344566543110    00000001111110                   01    1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 013096          262 WLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGF  338 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~  338 (449)
                      ........+.+. .......+.|.+..+  + +..+.+.+.....++.++|..+.+++.|   |+++++.+..+....++
T Consensus       241 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~d---r~g~~~~~~~~~~~~~~  316 (405)
T TIGR00891       241 VYLVVLVLFANL-YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGD---WLGRRKAYVCSLLAGQL  316 (405)
T ss_pred             HHHHHHHHHHHH-HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCchhhhHHHHHHHHH
Confidence            111111111111 112223456766543  2 3455677777778889999999999999   77777766655443322


Q ss_pred             HHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcc-hhH
Q 013096          339 VFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIE-NAA  416 (449)
Q Consensus       339 ~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~  416 (449)
                      .........++.+......++.+++.+...+....+.+|.+|+++||+++|+.+...+++...++.. |.+.+..+ ++.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~  396 (405)
T TIGR00891       317 LIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT  396 (405)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            2221111122222223332334444444566677788999999999999999888777765445444 55556665 444


Q ss_pred             H
Q 013096          417 M  417 (449)
Q Consensus       417 ~  417 (449)
                      .
T Consensus       397 ~  397 (405)
T TIGR00891       397 A  397 (405)
T ss_pred             h
Confidence            3

>PRK10054 putative transporter; Provisional

Probab=99.96  E-value=1.8e-25  Score=223.77  Aligned_cols=345  Identities=11%  Similarity=0.054  Sum_probs=223.4

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-H
Q 013096           58 NFLLLFSLASVMEGLWSVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-W  135 (449)
Q Consensus        58 ~~~~~~~l~~~~~~~~~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~  135 (449)
                      .++...++...+.+...|+.+... +++|+|+.++|++.+...+.+.+++++.|+++||+||||+++.+.+...++.+ .
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~   90 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI   90 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            334445555666666777776555 57999999999999999999999999999999999999999998888877765 6


Q ss_pred             HHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcc
Q 013096          136 KSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVV  215 (449)
Q Consensus       136 ~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~  215 (449)
                      .+++|++.+++.|.+.|.+.+...++.++|+. |.    .++++.++.++.......++..++|.+++++.+ .   +|+
T Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~----~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~---g~~  161 (395)
T PRK10054         91 PLVNNVTLVVLFFALINCAYSVFSTVLKAWFA-DN----LSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-Q---SIN  161 (395)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---ccC
Confidence            77889999999999988877766666655542 22    344456677777766777788888999988764 3   788


Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCCCc-chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc---C-C
Q 013096          216 PSSTASVFLSILGIICVSRGWTENPKMAF-DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVA---D-G  290 (449)
Q Consensus       216 ~~f~~~~~~~~~~~~~i~~~~~e~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~-~  290 (449)
                      .+|.+.....++..+.+....||++++++ ++......+++++||+++...+...+.......+ ..+.+.+..   + +
T Consensus       162 ~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~  240 (395)
T PRK10054        162 LPFWLAAICSAFPLVFIQIWVQRSEKAIATETGSVWSPSVLLQDKALLWFTCSGFLASFVSGAF-ASCISQYVMVVADSD  240 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhccCceehHHHHHHHHHHHHHHHh-hhhHHHHHHHhcccc
Confidence            99998766555554434333444432211 1111122467888998877665544433332222 123343332   1 1


Q ss_pred             -CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhh
Q 013096          291 -REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILP  369 (449)
Q Consensus       291 -~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p  369 (449)
                       ++...+.++..............+++.|   |.++++.+..+..+.++.+.......++.+.......+++++.+...|
T Consensus       241 ~~~~~~g~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p  317 (395)
T PRK10054        241 FAEKVVAVVLPVNAAMVVSLQYSVGRRLN---AANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP  317 (395)
T ss_pred             hHHHHHHHHHHhhhhheeeehhHHHHHHc---cCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence             1223455555555555555567788888   666666666555444444433333222333334445566777777788


Q ss_pred             HHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhH
Q 013096          370 SLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAA  416 (449)
Q Consensus       370 ~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~  416 (449)
                      ...++..+..|++.||+.++..+ ...++...++.. |.+.+..+...
T Consensus       318 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~  364 (395)
T PRK10054        318 GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWS  364 (395)
T ss_pred             hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhh
Confidence            88888999999999999887654 333444445444 44456565433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.96  E-value=2.9e-25  Score=220.84  Aligned_cols=329  Identities=12%  Similarity=0.052  Sum_probs=226.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhH
Q 013096           65 LASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPS  143 (449)
Q Consensus        65 l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~  143 (449)
                      +...+..+..|..|.+.+++|.|+++++++.+...++..+++++.|+++||+||||++..+.++..++.+ +...++++.
T Consensus        16 ~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   95 (385)
T TIGR00710        16 LGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIET   95 (385)
T ss_pred             HHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            3344455667778888889999999999999999999999999999999999999999999888888776 777899999


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHH
Q 013096          144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVF  223 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~  223 (449)
                      +.+.|+++|++.+...+..++ ++.|.    .++++.++.++.......++..++|.+++++.+..   +||..|.+...
T Consensus        96 ~~~~~~l~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~~~~~~~~  167 (385)
T TIGR00710        96 LLVLRFVQAFGASAGSVISQA-LVRDI----YPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL---SWHAIFAFLSL  167 (385)
T ss_pred             HHHHHHHHHcchhHHHHHHHH-HHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHH
Confidence            999999999999887776654 33443    34455677777777677777788888888887754   89999987665


Q ss_pred             HHHHHHHHHHhccccCCCCCcc---hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHH
Q 013096          224 LSILGIICVSRGWTENPKMAFD---DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGL  297 (449)
Q Consensus       224 ~~~~~~~~i~~~~~e~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~  297 (449)
                      ..++..+......||+++++++   +...+.++++++||+++...+...+.....+.+ ..+.|.+.++  + ++...+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~  246 (385)
T TIGR00710       168 AGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAF-FSGAPFVYIDIMGVSPSVFGL  246 (385)
T ss_pred             HHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHcChHHHHHHcCCCHHHHHH
Confidence            5444444444445665543221   122345677889998887665544444333333 3356766542  2 3455777


Q ss_pred             HHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhc---cc-chhHHHHHHHHHHHHHhhhhhhHHHH
Q 013096          298 IFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAY---DY-QEIGILVALFCLFHACVGLILPSLAR  373 (449)
Q Consensus       298 i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~---~~-~~~~~~~~~~~l~~~~~g~~~p~~~~  373 (449)
                      +.....++.+++..+.+++.|   |+++++.+..+..+..+.......   .. +.....+...++.+++.+...+....
T Consensus       247 ~~~~~~~~~~~~~~~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  323 (385)
T TIGR00710       247 LFALNIIAMIFGGFLNGRFIK---KWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMA  323 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777778888999999999999   777777665544333332222111   11 12222333444556777777777777


Q ss_pred             HHhccCCCcchhHHHHhhHHHHHH-HHHHHHHHh
Q 013096          374 LRTMYVPNELRGGMISLSLAPANA-AILLFLLLR  406 (449)
Q Consensus       374 ~~~~~~p~~~rg~~~~~~~~~~~~-~~~~~~~~g  406 (449)
                      ...|..| +.||++.++.+...+. +.+.++..+
T Consensus       324 ~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       324 YALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778776 5689999987765544 334444445

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=1.5e-25  Score=222.13  Aligned_cols=351  Identities=17%  Similarity=0.092  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHH-HHHHHHHHHH-HH
Q 013096           60 LLLFSLASVMEGLWSVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLI-FFILHLFVGV-WK  136 (449)
Q Consensus        60 ~~~~~l~~~~~~~~~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~-~~~~~~~~~l-~~  136 (449)
                      +..+++...+.++..|+.+... +++|.|+.++|++.+...+...+.+|+.|.++||+||||.++. +.+...++++ +.
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            3445666666777888886644 5899999999999999988899999999999999999988665 4444455544 77


Q ss_pred             HhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcch
Q 013096          137 SITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVP  216 (449)
Q Consensus       137 ~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~  216 (449)
                      .++|++.+++.|+++|.+.+...|...+ +..|..+++  ++......+.......++.+++|.+++++.+..   +||+
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~---~~~~  156 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFA-LAREHADRT--GREAVMFSSVMRAQISLAWVIGPPLAFWLALGF---GFTV  156 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhhc--chhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc---ccHH
Confidence            8899999999999998877766665544 334432211  111111234444455667778888888887754   8999


Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-Ccc
Q 013096          217 SSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REV  293 (449)
Q Consensus       217 ~f~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~  293 (449)
                      +|++.+...++..+...+..||.+++++++..+.+.++.+++|+.+.......+.... +.....+.|.+.++  + ++.
T Consensus       157 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~  235 (375)
T TIGR00899       157 MFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVACTLMWGC-NILYIINMPLLIIHELGLPDK  235 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHHHHHHHHH-HHHHHhhhHHHHHHHcCCCHH
Confidence            9998776655554444444666543322211222345567777766543333222222 12223355666543  2 344


Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHH
Q 013096          294 HLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLAR  373 (449)
Q Consensus       294 ~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~  373 (449)
                      +.|............+..+.+++.|   |+++++.+..+.....+........+ +.+.......+.+++.|...|..+.
T Consensus       236 ~~g~~~~~~~~~~~~~~~~~g~l~~---r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~  311 (375)
T TIGR00899       236 LAGLMMGTAAGLEIPFMLLAGYLIK---RFGKRRLMLLAALAGVAFYTGLAADN-SLWALLMLQLLNAIFIGILAGIGML  311 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH---HhcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666655555566777888999999   77777766555443333322222222 3333333444556777777788888


Q ss_pred             HHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHH
Q 013096          374 LRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAA  422 (449)
Q Consensus       374 ~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~  422 (449)
                      +.+|..|+ +++++.++.+...+++...++.. |...+..+....+.+.+
T Consensus       312 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~  360 (375)
T TIGR00899       312 YFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAI  360 (375)
T ss_pred             HHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            88888875 46799999887777765555444 44455556554444433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=5.5e-25  Score=220.71  Aligned_cols=335  Identities=14%  Similarity=0.121  Sum_probs=220.0

Q ss_pred             HHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHH
Q 013096           66 ASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSV  144 (449)
Q Consensus        66 ~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l  144 (449)
                      +.+...+..|..+++.+++|.|++++++..++..++..+++++.|+++||+|||+++..+..+..++++ +..++|++.+
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l   97 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQL   97 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            334445567777778889999999999999999999999999999999999999999999888887765 7788999999


Q ss_pred             HHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHH
Q 013096          145 WVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFL  224 (449)
Q Consensus       145 ~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~  224 (449)
                      ++.|+++|++.+...+...+ ++.|.    +++++..+.++.......++..++|.+++++.+.+   +||+.|.+....
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---g~~~~~~~~~~~  169 (401)
T PRK11043         98 LVLRFVQAVGVCSAAVIWQA-LVIDR----YPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF---GWQAIFATLFAI  169 (401)
T ss_pred             HHHHHHHHhhhHHHHHHHHH-HHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHH
Confidence            99999999998765554433 22332    34444555666555555566778888898887755   899999876655


Q ss_pred             HHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHH
Q 013096          225 SILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSL  302 (449)
Q Consensus       225 ~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~  302 (449)
                      .++..+...+ .+|++++++++.++.++++++++|+.+...+...+.....+.+ ..+.|.+.++ + ++.+.|+.+...
T Consensus       170 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~g~~~~~~  247 (401)
T PRK11043        170 TLLLILPTLR-LKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAW-LTGSPFILEQMGYSPADIGLSYVPQ  247 (401)
T ss_pred             HHHHHHHHHH-cCCCCCccccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHcCCCHHHHHHHHHHH
Confidence            5544433333 3443332222223345788889988765444333333332333 3456766653 2 344567766666


Q ss_pred             HHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHH---HHHHHhc-ccchhHHHHHHHHHHHHHhhhhhhHHHHHHhcc
Q 013096          303 LGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGF---VFSIIAY-DYQEIGILVALFCLFHACVGLILPSLARLRTMY  378 (449)
Q Consensus       303 ~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~---~l~~~~~-~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~  378 (449)
                      ..+.++|+...+++.|   |+++++.........++   .+..... ..++....+..+++.+++.+...|..++...+.
T Consensus       248 ~~~~~~g~~~~~~l~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (401)
T PRK11043        248 TIAFLVGGYGCRAALQ---KWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRP  324 (401)
T ss_pred             HHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7788899999999998   67766654333222221   1222112 122222334445566777788888887777676


Q ss_pred             CCCcchhHHHHhhHHHHHHHH-HHHHHHhHHhhhcch
Q 013096          379 VPNELRGGMISLSLAPANAAI-LLFLLLRGFYRNIEN  414 (449)
Q Consensus       379 ~p~~~rg~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~  414 (449)
                      .| ++||++.|+.+.....+. .+..+.|.+.++...
T Consensus       325 ~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~  360 (401)
T PRK11043        325 FP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL  360 (401)
T ss_pred             Cc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence            66 579999999887655443 333444555554333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=2.4e-26  Score=225.36  Aligned_cols=329  Identities=21%  Similarity=0.233  Sum_probs=226.1

Q ss_pred             HHHHHHHHHhhhhhHHHH-HHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh
Q 013096           61 LLFSLASVMEGLWSVFGE-YELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI  138 (449)
Q Consensus        61 ~~~~l~~~~~~~~~~~~~-~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~  138 (449)
                      ...++..+.+.+..|..+ .+.+++|.|+.+++++.+...++..+++++.|+++||+||||+++.+.++.+++++ +.++
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   82 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA   82 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence            345566677777788887 66679999999999999999999999999999999999999999999999988854 5556


Q ss_pred             cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhH
Q 013096          139 TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSS  218 (449)
Q Consensus       139 ~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f  218 (449)
                      +|.+.+++.|+++|++.+...+...+ ++.|.    .++++.++.++.......++.+++|.+++++.+..   +||+.|
T Consensus        83 ~~~~~~~~~~~l~g~~~~~~~~~~~~-~i~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~---~~~~~~  154 (352)
T PF07690_consen   83 SNFWLLLIARFLLGIGSGFFSPASNA-LIADW----FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF---GWRWAF  154 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC----CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC---HHCCHH
T ss_pred             hhHHHHhhhccccccccccccccccc-ccccc----chhhhhhhccccccchhhhhhhcccchhhhhhhcc---cccccc
Confidence            88889999999999999888777655 33332    44456777888888888888899999999988654   899999


Q ss_pred             HHHHHHHHHHHHHHHhccccCCCC-C---cchh---hh----hhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013096          219 TASVFLSILGIICVSRGWTENPKM-A---FDDY---RT----SFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLV  287 (449)
Q Consensus       219 ~~~~~~~~~~~~~i~~~~~e~~~~-~---~~~~---~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  287 (449)
                      ++.+...++..++.....+|++++ +   +++.   .+    +.++.++++|.++...... +.....+.....|.|.+.
T Consensus       155 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l  233 (352)
T PF07690_consen  155 LISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAF-FLFFFVFSGFSFFLPLYL  233 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             ccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhh-hHHHHHHHHhhcccchhh
Confidence            987777666544322233333222 1   1111   11    1256677777665222222 222222233455788874


Q ss_pred             cC--C-C-ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHH
Q 013096          288 AD--G-R-EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY--QEIGILVALFCLFH  361 (449)
Q Consensus       288 ~~--~-~-~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~  361 (449)
                      .+  + + ..+.+..+....+...++..+.+++.|   |+++++..........+.........  ++.........+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  310 (352)
T PF07690_consen  234 QEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSD---RFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIG  310 (352)
T ss_dssp             CHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            43  2 3 255666677777788888999999998   67665554443333322222222211  12233344555677


Q ss_pred             HHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHH
Q 013096          362 ACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILL  401 (449)
Q Consensus       362 ~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~  401 (449)
                      ++.+...|...++.++..|+|+||++.|+.+...+++...
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i  350 (352)
T PF07690_consen  311 FGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII  350 (352)
T ss_dssp             HHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999988777765443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10133 L-fucose transporter; Provisional

Probab=99.96  E-value=3.8e-25  Score=224.12  Aligned_cols=339  Identities=12%  Similarity=0.045  Sum_probs=219.0

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-H---HHh
Q 013096           63 FSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-W---KSI  138 (449)
Q Consensus        63 ~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~---~~~  138 (449)
                      +++-.+.+....++.|.+.+++|.|+.+.|+..+..+++..+++++.|+++||+||||++..+..+++++++ +   ..+
T Consensus        35 ~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a  114 (438)
T PRK10133         35 FFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI  114 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344445556677888888889999999999999999999999999999999999999999999999998775 3   457


Q ss_pred             cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc-c---------
Q 013096          139 TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG-I---------  208 (449)
Q Consensus       139 ~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~-~---------  208 (449)
                      +|++.++++|+++|+|.+...++.++. +.|..+    +++..+..+.......++..+++.++..+.. .         
T Consensus       115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~-v~~~~~----~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~  189 (438)
T PRK10133        115 MNYTLFLVGLFIIAAGLGCLETAANPF-VTVLGP----ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL  189 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhCC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhh
Confidence            899999999999999999887776653 334321    1122223444455555666667766654330 0         


Q ss_pred             -------ccc------CCcchhHHH-HHHHHHHHHHHHHhccccCCCCCcch----hhhhhhHhhhcChhHHHHHHHHHH
Q 013096          209 -------DVK------KGVVPSSTA-SVFLSILGIICVSRGWTENPKMAFDD----YRTSFFTYIFGDKRIWLLVLAQAC  270 (449)
Q Consensus       209 -------~~~------~g~~~~f~~-~~~~~~~~~~~i~~~~~e~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~  270 (449)
                             ..+      .+||++|+. ..+..++..+...+..||.+++++++    ...+.++++++||+++...+...+
T Consensus       190 ~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~  269 (438)
T PRK10133        190 DKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFC  269 (438)
T ss_pred             hccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHhCchHHHHHHHHHH
Confidence                   000      256777764 33333333333334445533221111    112346788899987765444433


Q ss_pred             HHHHHHHHHHHhhhhhc-cC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcc
Q 013096          271 LQFSIALFWILWAPTLV-AD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD  346 (449)
Q Consensus       271 ~~~~~~~~~~~~~p~~~-~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~  346 (449)
                      .....+. ...|.|.++ ++  + ++.+.+..+..+.+++++|+.+.+++.|   |++++|.+..+..+..+.+.+..+.
T Consensus       270 ~~~~~~~-~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~---r~g~~~~l~~~~~~~~~~~~~~~~~  345 (438)
T PRK10133        270 YVGAQTA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS---RFAPHKVLAAYALIAMALCLISAFA  345 (438)
T ss_pred             HHHHHHH-HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHc
Confidence            3333222 234666553 32  2 4556788888889999999999999999   7888887766554443333333332


Q ss_pred             cchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhcc
Q 013096          347 YQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIE  413 (449)
Q Consensus       347 ~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~~  413 (449)
                      ...  ..+..+.+.+++.+..+|...+...+..|++ .+++.++..+....+.+.+++.|...+..+
T Consensus       346 ~~~--~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~~~~g~~~~~~i~G~l~~~~g  409 (438)
T PRK10133        346 GGH--VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_pred             CCh--HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhHHhccchHHHHHHHHHHHhcc
Confidence            221  2244566778999999999999998887754 556666554322222344455565556554

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=1.1e-25  Score=228.30  Aligned_cols=350  Identities=11%  Similarity=0.034  Sum_probs=205.2

Q ss_pred             hhHHHHHHHHHHHHHhhh----hhHHHHHHHHHhCCChHHHHHHH-H-----HHHHhHHHHHHHHHhhhhhhCchHHHHH
Q 013096           55 FQRNFLLLFSLASVMEGL----WSVFGEYELVYYGVAKEQMMLLL-C-----AGFSAALFVGSFLGMISDLIGQKKVCLI  124 (449)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~g~s~~~ig~l~-~-----~~~~~~~l~~~~~G~laDr~GRr~~ll~  124 (449)
                      .|++......++.+.|.+    .++..|.+.+|++.++.+.+.+. +     .+++...+++++.|+++||+||||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   91 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV   91 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence            344455555566666654    45677888889999887765332 2     2233345678899999999999999999


Q ss_pred             HHHHHHHHHH-HHHhcchh--------HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHH
Q 013096          125 FFILHLFVGV-WKSITAHP--------SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAAL  195 (449)
Q Consensus       125 ~~~~~~~~~l-~~~~~s~~--------~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~  195 (449)
                      +..++.++++ +++++|++        .+++.|+++|++.+...+.... ++.|..    |+++.++..+.......++.
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~----p~~~rg~~~~~~~~~~~~g~  166 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSV-YLAEIA----TPGRKGFYTSWQSASQQVAV  166 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHH-HHHhhC----CcccchHHHHHHHHHHHHHH
Confidence            9999988776 88888877        4689999999999987776544 455543    33444555555444444444


Q ss_pred             HHHHHHHHHHhccc-----ccCCcchhHHHHHHHHHHHHHHHHhccccCCCC--Ccch-hhhhhhHhhhcChhHHHHHHH
Q 013096          196 IGGQVLANWLVGID-----VKKGVVPSSTASVFLSILGIICVSRGWTENPKM--AFDD-YRTSFFTYIFGDKRIWLLVLA  267 (449)
Q Consensus       196 i~a~~lg~~l~~~~-----~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~  267 (449)
                      .+++.++..+....     ..+|||++|++......+. .......||+++.  ++++ ..++.++.+.++++.+.....
T Consensus       167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (434)
T PRK15075        167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI-FLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGML  245 (434)
T ss_pred             HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHH
Confidence            45555555432100     0359999999765443222 2233334454221  1011 111224445556555544333


Q ss_pred             HHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHH-HHHH-
Q 013096          268 QACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGF-VFSI-  342 (449)
Q Consensus       268 ~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~-~l~~-  342 (449)
                      ..+.....+..+..|.|.++++  + +..+.++......++.+++..+.+++.|   |+++|+....+..+..+ .+.. 
T Consensus       246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D---r~g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD---RIGRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHH
Confidence            3333333344556789988764  2 2334555555666778899999999999   78877766544322221 1111 


Q ss_pred             -HhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHH--HHHHHHHHhHHhhhcc
Q 013096          343 -IAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANA--AILLFLLLRGFYRNIE  413 (449)
Q Consensus       343 -~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~--~~~~~~~~g~~~~~~~  413 (449)
                       .....++.........+.+++.|...+....+..|..|++.||++.++.+...+.  +.....+.|...+..+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        323 SWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence             1111122222222233344556666676777889999999999998885443332  2223333344445544

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=3.8e-25  Score=224.43  Aligned_cols=346  Identities=11%  Similarity=0.032  Sum_probs=203.7

Q ss_pred             hhHHHHHHHHHHHHHhhhhh----HHHHHHH-HHh--CCChHHHHHH-----HHHHHHhHHHHHHHHHhhhhhhCchHHH
Q 013096           55 FQRNFLLLFSLASVMEGLWS----VFGEYEL-VYY--GVAKEQMMLL-----LCAGFSAALFVGSFLGMISDLIGQKKVC  122 (449)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~~~----~~~~~l~-~~~--g~s~~~ig~l-----~~~~~~~~~l~~~~~G~laDr~GRr~~l  122 (449)
                      .+++.....+++.+.|+++.    .+.+... +++  +.++.+ +.+     +.++++...+++++.|+++||+|||+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            34445555666777777643    2333222 345  677663 443     2456677888899999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHhcchh--------HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHH
Q 013096          123 LIFFILHLFVGV-WKSITAHP--------SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESA  193 (449)
Q Consensus       123 l~~~~~~~~~~l-~~~~~s~~--------~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~  193 (449)
                      +.+.++++++++ +++++|++        .+++.|+++|++.|..++...+ ++.|..+++    +.++..+....+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~~~e~~p~~----~rg~~~~~~~~g~~~  172 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL-LAVESAPKN----KKAFYSSGVQVGYGV  172 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH-HHHHhCCCC----CCcHHHHHHHHHHHH
Confidence            999999999876 88899987        5889999999999998877643 566664333    233444444445555


Q ss_pred             HHHHHHHHHHHHhccc-----ccCCcchhHHHHHHHHHHHHHHHHhccccCCCCC-cc-h--h--hh-hhhHhhhcChhH
Q 013096          194 ALIGGQVLANWLVGID-----VKKGVVPSSTASVFLSILGIICVSRGWTENPKMA-FD-D--Y--RT-SFFTYIFGDKRI  261 (449)
Q Consensus       194 ~~i~a~~lg~~l~~~~-----~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~-~~-~--~--~~-~~~~~l~~~~~~  261 (449)
                      +.++++.+..++.+..     ..+|||.+|.+..++.++. +.+....||+++.+ ++ +  .  ++ +..+.++++|+.
T Consensus       173 G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  251 (438)
T PRK09952        173 GLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGA  251 (438)
T ss_pred             HHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHH
Confidence            5555555544443210     0359999999877665443 23444556764321 11 0  0  01 113346677776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCCCc---cchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 013096          262 WLLVLAQACLQFSIALFWILWAPTLVADGRE---VHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGF  338 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~  338 (449)
                      +.......+.....++....|.|.+.++..+   .....+.........++..+.+++.|   |++++|.+..+..+..+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~D---r~grr~~~~~~~~~~~~  328 (438)
T PRK09952        252 FLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLAD---RFGRRRVYITGALIGTL  328 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHH
Confidence            6554322222222222335578877654222   11222222334456678889999999   78877766655433332


Q ss_pred             HHHHH--hc-ccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHH-HHHHHHHH-HhHHhh
Q 013096          339 VFSII--AY-DYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPAN-AAILLFLL-LRGFYR  410 (449)
Q Consensus       339 ~l~~~--~~-~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~-~~~~~~~~-~g~~~~  410 (449)
                      +....  .. ..+.....+...++.+++.+...+..+++..|.+|++.|+++.++.....+ ++...++. .+.+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~  405 (438)
T PRK09952        329 SAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT  405 (438)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111  11 111222223334444666777778888899999999999998888544333 33333333 344444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=2.5e-25  Score=221.08  Aligned_cols=312  Identities=15%  Similarity=0.123  Sum_probs=213.0

Q ss_pred             hhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHH
Q 013096           70 EGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVAN  148 (449)
Q Consensus        70 ~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R  148 (449)
                      ..+..|..|.+.+++|+|+++++.+.+...++..+++++.|+++||+|||+++..+.++.+++++ +...++++.+++.|
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   86 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMR   86 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            34567888888899999999999999999999999999999999999999999999988888776 77789999999999


Q ss_pred             HHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          149 ICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       149 ~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      +++|++.+...+..++ ++.|.    .++++.++.++.......++.+++|.+++++.+..   +||+.|.+.....++.
T Consensus        87 ~l~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~  158 (377)
T PRK11102         87 FLHGLAAAAASVVINA-LMRDM----FPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF---SWHAIFWVLALAAILA  158 (377)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChHHHHHHHHHHHHHH
Confidence            9999999877666554 33332    34555677777777777777888899888887754   8999998766655554


Q ss_pred             HHHHHhccccCCCCCcc-h----hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHH
Q 013096          229 IICVSRGWTENPKMAFD-D----YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFP  300 (449)
Q Consensus       229 ~~~i~~~~~e~~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~  300 (449)
                      .+......||+++++++ +    ...++++++++||+.+...+...+.....+.+ ..+.|.+..+  + ++.+.|..+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~g~~~~  237 (377)
T PRK11102        159 AALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF-LTAGPFVYIELNGVSPQNFGYYFA  237 (377)
T ss_pred             HHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHhCCCHHHHHHHHH
Confidence            44444445665433211 1    11234667888988776655444444333333 3345655443  2 4456788888


Q ss_pred             HHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHH---HHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 013096          301 SLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVV---LGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTM  377 (449)
Q Consensus       301 ~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~  377 (449)
                      ...++.+++..+.+++.|   |+++++.+..+..+   .++.+......+...+.......++..+.+...+.......|
T Consensus       238 ~~~~~~~~~~~~~g~l~~---r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (377)
T PRK11102        238 LNIVFLFVMTIINSRFVR---RVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILD  314 (377)
T ss_pred             HHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence            888888999999999999   78888766654432   222222222211122222222223333444455555566677


Q ss_pred             cCCCcchhHHHHhhHHH
Q 013096          378 YVPNELRGGMISLSLAP  394 (449)
Q Consensus       378 ~~p~~~rg~~~~~~~~~  394 (449)
                      ..| +.+|++.+..+..
T Consensus       315 ~~~-~~~g~~~~~~~~~  330 (377)
T PRK11102        315 EFP-HMAGTASSLAGTL  330 (377)
T ss_pred             ccc-ccchHHHHHHHHH
Confidence            766 7899998886554

>PRK03699 putative transporter; Provisional

Probab=99.96  E-value=4e-25  Score=221.33  Aligned_cols=354  Identities=12%  Similarity=0.028  Sum_probs=216.8

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ..++..|++.+++|+|+++++.+.+...++..+++++.|+++||+||||++..+.++..++++ +.+++|++.+++.|++
T Consensus        25 ~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l  104 (394)
T PRK03699         25 VTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFV  104 (394)
T ss_pred             HHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence            356677888899999999999999999999999999999999999999999999888888776 7788999999999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      +|++.+...+...+ ++.|.    +++++.++..+.......++..++|.+.+++....  .+||++|.+...+.++..+
T Consensus       105 ~G~~~g~~~~~~~~-~i~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        105 LGVVSGITMSIGTF-LITHV----YEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS--IEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHhhHhhccchhH-Hhhhh----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHH
Confidence            99999876665443 33333    23333444555444444455566777777665432  4899999875554443333


Q ss_pred             HHH-hccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHH
Q 013096          231 CVS-RGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGAR  306 (449)
Q Consensus       231 ~i~-~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~  306 (449)
                      +.. +..||.+++++++ .++..+. ..+++++...+...+.....+ .+..|.|.+.++  + +..+.+...+.+.++.
T Consensus       178 ~~~~~~~p~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~  254 (394)
T PRK03699        178 LTLFSEFPALGKHAPKA-DKPVAKE-KWGIGVLFLAIAALLYILAQL-TFISWVPEYAQKKFGMSLEDAGNLVSNFWMAY  254 (394)
T ss_pred             HHHhcCCccccccCccc-cCccccc-cCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCChHHhhHHHHHHHHHH
Confidence            222 2223211111111 1111111 123455444433333332222 335689988854  2 3445677777777888


Q ss_pred             HHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhH
Q 013096          307 MLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGG  386 (449)
Q Consensus       307 ~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~  386 (449)
                      .+|..+.+++.|   |+++++.+.....+..+.+......+ +........++.+++.+..+|...+...+..|++ +++
T Consensus       255 ~ig~~~~g~l~d---r~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~  329 (394)
T PRK03699        255 MVGMWIFSFIVR---FFDLQRILTVLAGLALVLMYLFVNTD-DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPK  329 (394)
T ss_pred             HHHHHHHHHHHH---HhchhhHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHH
Confidence            999999999999   78877766654444333333332322 2222333344556666667777777777776644 567


Q ss_pred             HHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013096          387 MISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAALGLFIAAGCMHVLKRWGK  440 (449)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  440 (449)
                      ..+......+++...++.. |.+.+..+....+...++..+++.+...+..|..|
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGFVSK  384 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            7777666666665445444 44555556544433333333333233334444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=9.6e-25  Score=218.46  Aligned_cols=328  Identities=14%  Similarity=0.084  Sum_probs=217.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhH
Q 013096           65 LASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPS  143 (449)
Q Consensus        65 l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~  143 (449)
                      +..+.+.+..|..|++.+++|.|+.+++++.+...++..+++++.|+++||+||||+++.+..+..++.+ +..++|++.
T Consensus        19 ~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   98 (394)
T PRK11652         19 VGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTV   98 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            4445555667778888899999999999999999999999999999999999999999999888877665 677899999


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHH
Q 013096          144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVF  223 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~  223 (449)
                      +++.|+++|++.+...+...+ ++.|.    +++++.++..+....+..++..++|.+++++.+..   +||+.|.+...
T Consensus        99 l~~~~~~~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~---g~~~~f~~~~~  170 (394)
T PRK11652         99 LIAASAIQGLGTGVGGVMART-LPRDL----YEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF---GWRACYLFLLL  170 (394)
T ss_pred             HHHHHHHHHhhhhHHHHHHHH-HHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ChHHHHHHHHH
Confidence            999999999998865544332 22222    34455666777766677777788899898887654   89999988655


Q ss_pred             HHHHHHHHHHhccccCCCCCc-chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHH
Q 013096          224 LSILGIICVSRGWTENPKMAF-DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIF  299 (449)
Q Consensus       224 ~~~~~~~~i~~~~~e~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~  299 (449)
                      ..++..+......||++++++ ++..++.++++++||+.+...............+ ..+.|.+.++  + ++...|+.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~  249 (394)
T PRK11652        171 LGAGVTFSMARWMPETRPADARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVF-EACSGVLMGAVLGLSSMTVSILF  249 (394)
T ss_pred             HHHHHHHHHHHhCCccCccccchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH-HHhChHHHHHHcCCCHHHHHHHH
Confidence            544433333344577544322 2223456788899988765443322222222222 2234545443  2 344567777


Q ss_pred             HHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHH-HHHHHHhcc-cchhHHHHHHHHHHHHHhhhhhhHHHHHHhc
Q 013096          300 PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLG-FVFSIIAYD-YQEIGILVALFCLFHACVGLILPSLARLRTM  377 (449)
Q Consensus       300 ~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~  377 (449)
                      .....+..+|+.+.+++.|   |.++.........+.+ +.+...... ..+.+......++.+++.++..|..++...+
T Consensus       250 ~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  326 (394)
T PRK11652        250 ILPIPAAFFGAWFAGRPNK---RFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAME  326 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777788889999999988   4442221111111112 222222211 1122333445566777888889999998888


Q ss_pred             cCCCcchhHHHHhhHHHHHHHHHHHHHH
Q 013096          378 YVPNELRGGMISLSLAPANAAILLFLLL  405 (449)
Q Consensus       378 ~~p~~~rg~~~~~~~~~~~~~~~~~~~~  405 (449)
                      ..| +++|++.++.+...+++...+...
T Consensus       327 ~~~-~~~g~~~~~~~~~~~lg~~~~~~~  353 (394)
T PRK11652        327 PFP-YLAGTAGALLGGLQNIGSGLAALL  353 (394)
T ss_pred             hcc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            887 568999888877777665444433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.96  E-value=3.3e-25  Score=220.06  Aligned_cols=338  Identities=14%  Similarity=0.082  Sum_probs=222.9

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHH
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANI  149 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~  149 (449)
                      ...++..|.+.+++|.|+.+++++.+...++..+++++.|+++||+|||+++..+.++..++.. +.+++|++.+++.|+
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRV   90 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            3445566777789999999999999999999999999999999999999999999988887765 778899999999999


Q ss_pred             HHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          150 CLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       150 l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      ++|++.+...+...+ ++.|.    .++++.++.++.......++.++++.+++++.+..   +||+.|.+.....++..
T Consensus        91 l~g~~~~~~~~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        91 LLGAAEAPFFPGIIL-IVASW----FPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF---SWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHhhhhHHHH-HHHHh----CCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC---CchHHHHHHHHHHHHHH
Confidence            999999887766554 34443    35556677788777777788888999888877755   89999987665544443


Q ss_pred             HHHHhccccCCCCC---c---ch-----------------hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013096          230 ICVSRGWTENPKMA---F---DD-----------------YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTL  286 (449)
Q Consensus       230 ~~i~~~~~e~~~~~---~---~~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  286 (449)
                      +......||+++++   .   ++                 ..+...++.+++|+++...+...+...... ....|.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  241 (399)
T TIGR00893       163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLG-FFLTWFPTY  241 (399)
T ss_pred             HHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence            33333344433210   0   00                 001225577888888776655444443333 334467777


Q ss_pred             ccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchh--HHHH-HH-HHHH--HHHHHHhcc-cchhHHHHHH
Q 013096          287 VAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTED--CLLY-AF-VVLG--FVFSIIAYD-YQEIGILVAL  356 (449)
Q Consensus       287 ~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~--~l~~-~~-~~~~--~~l~~~~~~-~~~~~~~~~~  356 (449)
                      .++  + ++.+.+.+.....++.+++..+.+++.|   |+++++  .... .. ....  ..+...... .+.....+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (399)
T TIGR00893       242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSD---LLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALAL  318 (399)
T ss_pred             HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            654  2 3445677777777788899999999998   555553  1111 11 1111  111111111 1122222222


Q ss_pred             HHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcc-hhHHHHHH
Q 013096          357 FCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIE-NAAMVAFA  421 (449)
Q Consensus       357 ~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~  421 (449)
                      .++..++.+ ..|...++.+|..|+++||+++|+.+...+++...++.. |.+.+..+ ....+.+.
T Consensus       319 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~  384 (399)
T TIGR00893       319 VALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVV  384 (399)
T ss_pred             HHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHH
Confidence            223333344 678888999999999999999999988877765445444 44555555 44444333

>TIGR00897 2A0118 polyol permease family

Probab=99.95  E-value=4.2e-24  Score=214.49  Aligned_cols=349  Identities=14%  Similarity=0.099  Sum_probs=217.9

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH--
Q 013096           60 LLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK--  136 (449)
Q Consensus        60 ~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~--  136 (449)
                      +...++...++++..++.+++.+|+|.|++|++++.+.+.++..+++++.|+++||+||||++..+.++++++++ +.  
T Consensus        19 ~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~   98 (402)
T TIGR00897        19 YIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF   98 (402)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            344456666777777777777789999999999999999999999999999999999999999999988877654 32  


Q ss_pred             -H-hcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHH-HHHHHHHHHHhcccccCC
Q 013096          137 -S-ITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAAL-IGGQVLANWLVGIDVKKG  213 (449)
Q Consensus       137 -~-~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~-i~a~~lg~~l~~~~~~~g  213 (449)
                       . .+|++.+++.|+++|++.+...+...++.. +    ..++++.+++.+.......++. +.+|.+++++.+..   |
T Consensus        99 ~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~-~----~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~---g  170 (402)
T TIGR00897        99 GLGHANYPLILLFYGIRGLGYPLFAYSFLVWVV-Y----NTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF---G  170 (402)
T ss_pred             hccCccHHHHHHHHHHHHcchHHHHhHHHHHHH-H----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---c
Confidence             2 357889999999999998776555443322 2    2355567778887776666664 57888888887654   6


Q ss_pred             cchhHHHHHHHHHHHHHHHHhccccCCCC---Ccc---hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013096          214 VVPSSTASVFLSILGIICVSRGWTENPKM---AFD---DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLV  287 (449)
Q Consensus       214 ~~~~f~~~~~~~~~~~~~i~~~~~e~~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  287 (449)
                      |+..++.......+..++.....+|.+++   +++   ++.++.++.+++||+++...+...+.....+.+ ..|.|.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~  249 (402)
T TIGR00897       171 EMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGF-AVFLPMFV  249 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            55444433222222212122222322111   111   111234677899999887665544443333333 45788876


Q ss_pred             cC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHHh----cccchhHHHHHHHHHH
Q 013096          288 AD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLL-YAFVVLGFVFSIIA----YDYQEIGILVALFCLF  360 (449)
Q Consensus       288 ~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~-~~~~~~~~~l~~~~----~~~~~~~~~~~~~~l~  360 (449)
                      ++ + +..+.+.+.....++..+|+...+++.|   |+++++... .+....++......    ...++.+......++.
T Consensus       250 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d---r~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (402)
T TIGR00897       250 AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGD---KLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL  326 (402)
T ss_pred             HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            54 2 3344566666677888999999999999   677666543 22222222111111    1112222333344455


Q ss_pred             HHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHH
Q 013096          361 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAA  422 (449)
Q Consensus       361 ~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~  422 (449)
                      +++.+...|. .....+.. +++||+++|+.+...+++...++.. |.+.+..+....+.+.+
T Consensus       327 G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a  387 (402)
T TIGR00897       327 GIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFA  387 (402)
T ss_pred             HHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            5555544443 34555654 4689999999988888775555544 55556666544444433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.95  E-value=4.3e-24  Score=213.57  Aligned_cols=311  Identities=12%  Similarity=0.043  Sum_probs=200.9

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcc
Q 013096           62 LFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITA  140 (449)
Q Consensus        62 ~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s  140 (449)
                      ...+...+..+..+..|.+.+++|.|+.++++..+...++..+++++.|+++||+||||+++.+.+++.++.+ +..++|
T Consensus        11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~   90 (392)
T PRK10473         11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET   90 (392)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence            3334444444566788888899999999999999999999999999999999999999999999988888776 677889


Q ss_pred             hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHH
Q 013096          141 HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTA  220 (449)
Q Consensus       141 ~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~  220 (449)
                      ++.+++.|+++|++.+...+...+ ++.|.    .++++.++..+.......++.+++|.+++.+.+..   +|++.|++
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~-~i~~~----~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~---g~~~~~~~  162 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFA-ILRDT----LDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF---PWQSLFYT  162 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHH-HHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---ChHHHHHH
Confidence            999999999999998876665443 33333    34455666777666666666778888888876644   88988887


Q ss_pred             HHHHHHHHHHHHHhccccCCCCCcc--hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-Cccch
Q 013096          221 SVFLSILGIICVSRGWTENPKMAFD--DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHL  295 (449)
Q Consensus       221 ~~~~~~~~~~~i~~~~~e~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~  295 (449)
                      .....++..++.....||+++++++  +...+..++.++|++.+.......+.......+ ..+.|.+..+  + ++.+.
T Consensus       163 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~  241 (392)
T PRK10473        163 MAAMGILVLLLSLFILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLSVTVILTF-VNTSPVLLMEQMGFSRGEY  241 (392)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccCCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-HHhCHHHHHHHcCCCHHHH
Confidence            6655544444333445665433211  112233556778887765444333332222222 2345655443  3 33456


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHH
Q 013096          296 GLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLR  375 (449)
Q Consensus       296 g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~  375 (449)
                      +.......++.+++..+.+++.|   |+++++.+..+..+..++.......... ......+.+...+.+...+...  .
T Consensus       242 ~~~~~~~~~~~i~~~~~~~~l~~---r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~~~~~~~~--~  315 (392)
T PRK10473        242 AIIMALTAGVSMTVSFSTPFALG---IFKPRTLMLTSQVLFLAAGITLALSPSH-AVSLFGITLICAGFSVGFGVAM--S  315 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHH--H
Confidence            77777777888899999999998   7888877666554444433333222211 1222223333334443343332  3


Q ss_pred             hccCCCcchhHH
Q 013096          376 TMYVPNELRGGM  387 (449)
Q Consensus       376 ~~~~p~~~rg~~  387 (449)
                      .+..|.++|+..
T Consensus       316 ~~~~~~~~~~g~  327 (392)
T PRK10473        316 QALGPFSLRAGV  327 (392)
T ss_pred             HHhccCcccccH
Confidence            445566666543

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=2.8e-24  Score=220.19  Aligned_cols=322  Identities=11%  Similarity=0.061  Sum_probs=217.9

Q ss_pred             HhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHH
Q 013096           69 MEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVA  147 (449)
Q Consensus        69 ~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~  147 (449)
                      ......+..|.+.+++|.|+.+.+++.+.+.++..++.++.|+++||+||||+++.+.++++++.+ +.++++++.+++.
T Consensus        25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  104 (471)
T PRK10504         25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLA  104 (471)
T ss_pred             hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            334567778888899999999999998888888899999999999999999999998888887765 7788999999999


Q ss_pred             HHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q 013096          148 NICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSIL  227 (449)
Q Consensus       148 R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~  227 (449)
                      |+++|++.+...+...+ .+.|.    .++++.++.++.......++..++|.+++++.+..   +||+.|.+......+
T Consensus       105 ~~l~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~---gw~~~f~~~~~~~~l  176 (471)
T PRK10504        105 RVLQGVGGAMMVPVGRL-TVMKI----VPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA---SWHWIFLINIPVGII  176 (471)
T ss_pred             HHHHHhhhHHHHHHHHH-HHHHH----cCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc---cHHHHHHHHHHHHHH
Confidence            99999999987776544 33333    35555667777766666677888999999888755   899999987665544


Q ss_pred             HHHHHHhccccCCCCCcc-hh-----------------------------------------------hh---hh--hHh
Q 013096          228 GIICVSRGWTENPKMAFD-DY-----------------------------------------------RT---SF--FTY  254 (449)
Q Consensus       228 ~~~~i~~~~~e~~~~~~~-~~-----------------------------------------------~~---~~--~~~  254 (449)
                      ..+......|+.+.++++ +.                                               ++   ++  -.+
T Consensus       177 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (471)
T PRK10504        177 GAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLK  256 (471)
T ss_pred             HHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH
Confidence            444333333332211100 00                                               00   00  013


Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHH
Q 013096          255 IFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLY  331 (449)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~  331 (449)
                      +++||++........+.... +.....+.|.+.+.  + ++...++......++.+.+..+.+++.|   |+++++.+..
T Consensus       257 l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~---r~g~~~~~~~  332 (471)
T PRK10504        257 LFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVN---RFGYRRVLVA  332 (471)
T ss_pred             HhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCchHHHHH
Confidence            56777776544433333322 22223456766543  2 3455677776667777778888999999   7888887766


Q ss_pred             HHHHHHHHHHHHhc-cc-chhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHH
Q 013096          332 AFVVLGFVFSIIAY-DY-QEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF  402 (449)
Q Consensus       332 ~~~~~~~~l~~~~~-~~-~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~  402 (449)
                      +..+.++....... .. .+.+.....+.+.+++.+...+..+.+..+.+|++.||+++|+.++...++...+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig  405 (471)
T PRK10504        333 TTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIG  405 (471)
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHH
Confidence            55544443332222 11 1222222334445677777788888888899999999999999887766654333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.95  E-value=1.3e-24  Score=223.30  Aligned_cols=326  Identities=11%  Similarity=0.024  Sum_probs=228.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhH
Q 013096           65 LASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPS  143 (449)
Q Consensus        65 l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~  143 (449)
                      +......+..+..|.+.+++|.|+.+++++.+...++..++.++.|+++||+|||++++.+.+++.++++ +..++|++.
T Consensus        13 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   92 (485)
T TIGR00711        13 MAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLEL   92 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHH
Confidence            4444455667788888899999999999999999999999999999999999999999999999988776 888899999


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHH
Q 013096          144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVF  223 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~  223 (449)
                      +++.|+++|++.+...+...+ ++.|.    .++++.++.++.......++..++|.+++++.+.+   +||+.|++...
T Consensus        93 l~~~~~~~G~~~~~~~~~~~~-~i~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~w~~~f~~~~~  164 (485)
T TIGR00711        93 MIIFRVIQGFGGGPLIPLSFS-TLLNI----YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY---HWRWIFLINVP  164 (485)
T ss_pred             HHHHHHHHHhhhhhHHHHHHH-HHHHH----CCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc---CceehhhhhhH
Confidence            999999999999987776654 33443    34555677777777777778888999999988755   89999988765


Q ss_pred             HHHHHHHHHHhccccCCCCCcc--hh------------------h---------------------------------hh
Q 013096          224 LSILGIICVSRGWTENPKMAFD--DY------------------R---------------------------------TS  250 (449)
Q Consensus       224 ~~~~~~~~i~~~~~e~~~~~~~--~~------------------~---------------------------------~~  250 (449)
                      +.++..+...+..||+++++++  +.                  +                                 ++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (485)
T TIGR00711       165 IGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDN  244 (485)
T ss_pred             HHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            5554444444344543322100  00                  0                                 00


Q ss_pred             h--hHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCc
Q 013096          251 F--FTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRT  325 (449)
Q Consensus       251 ~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~  325 (449)
                      +  -.+++++|+++...+...+.....+.. ..+.|.+.++  + ++.+.|.......++.++++.+.+++.|   |+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~---r~~~  320 (485)
T TIGR00711       245 PLVDLRLFKYRNFTIGCVYMSLLGLGLYGS-FYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD---KIDP  320 (485)
T ss_pred             CccCHHHHcCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCc
Confidence            0  013556666665544444433333332 3467877654  2 4456777777778888999999999999   7887


Q ss_pred             hhHHHHHHHHHHHHHHHHh--cccc-hhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHH
Q 013096          326 EDCLLYAFVVLGFVFSIIA--YDYQ-EIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF  402 (449)
Q Consensus       326 ~~~l~~~~~~~~~~l~~~~--~~~~-~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~  402 (449)
                      ++.+..+..+.+++.....  ...+ +.+......++.+++.|...+.......+..|+++||++.|+.+...+++...+
T Consensus       321 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig  400 (485)
T TIGR00711       321 RKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIG  400 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHH
Confidence            7776666555554444333  2221 222334445566777887776666777788899999999999887777654333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=1.1e-23  Score=209.95  Aligned_cols=337  Identities=15%  Similarity=0.045  Sum_probs=226.3

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHH----HHHHHHHHHHHHHH
Q 013096           62 LFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCL----IFFILHLFVGVWKS  137 (449)
Q Consensus        62 ~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll----~~~~~~~~~~l~~~  137 (449)
                      .++.-....++..|++|.+.+++|.|++|+|.+.+...+...+.++++|+++||+|||+...    .+..++.+ ..+..
T Consensus        12 ~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-~~~~~   90 (382)
T TIGR00902        12 GFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-AFSAG   90 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-HHHHh
Confidence            34444555677889998888999999999999999999999999999999999999855432    22222222 12446


Q ss_pred             hcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchh
Q 013096          138 ITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPS  217 (449)
Q Consensus       138 ~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~  217 (449)
                      +++++.+++.|+++|.+.+...|..++. ..+.. +     +.++.++......+++.+++|.+++++.+.+   |||..
T Consensus        91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al-~~~~~-~-----~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~---g~~~~  160 (382)
T TIGR00902        91 AHNAWLLFIAIGLFALFFSAGMPIGDAL-ANTWQ-K-----QFGLDYGKVRLIGSAAFIIGSALFGGLIGMF---DEQNI  160 (382)
T ss_pred             hhhHHHHHHHHHHHHHHHccchhHHHHH-HHHHH-H-----HcCCCccHHHHHHHHHHHHHHHHHHHHHHHc---ChhHH
Confidence            7899999999999999888777776653 33321 1     1222344555566677888999999988865   89999


Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCCCc---c-hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-C
Q 013096          218 STASVFLSILGIICVSRGWTENPKMAF---D-DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-R  291 (449)
Q Consensus       218 f~~~~~~~~~~~~~i~~~~~e~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~  291 (449)
                      |.+......+..+ .....|+.+++++   + +.+.+.+++++|||+++.+.+...+.......+ ..+.|.+.++ + +
T Consensus       161 f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~-~~~~~~~l~~~g~s  238 (382)
T TIGR00902       161 LAILTAGLAFMLI-GFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY-YGFSAIYWQAAGIS  238 (382)
T ss_pred             HHHHHHHHHHHHH-HHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCC
Confidence            8875444332222 2222232222111   1 111234678899999988766655555544433 3356666654 2 4


Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHH
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSL  371 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~  371 (449)
                      +...|..+....++.+++..+.+++.|   |++.++.+..+....++......+.+ +.+..+...++.++..|+..+..
T Consensus       239 ~~~~g~l~~~~~~~~i~~~~~~~~l~~---r~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~q~l~g~~~~~~~~~~  314 (382)
T TIGR00902       239 ASATGLLWGIGVLAEIIIFAFSNKLFQ---NCSARDLLLISAIACVGRWAIIGAIE-AFPLIFLLQILHCGTFAVCHLAA  314 (382)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHh---hCCHHHHHHHHHHHHHHHHHHHHhHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788887777888889999999999   78888887777666665554444433 33444455567778888899999


Q ss_pred             HHHHhccCCCcchhHHHHhhHH-HHHHHHHHHHHHh-HHhhhcchhH
Q 013096          372 ARLRTMYVPNELRGGMISLSLA-PANAAILLFLLLR-GFYRNIENAA  416 (449)
Q Consensus       372 ~~~~~~~~p~~~rg~~~~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~  416 (449)
                      ..+.++. |+++|++..++++. ..+++...+++.+ .+.+..+...
T Consensus       315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~  360 (382)
T TIGR00902       315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGT  360 (382)
T ss_pred             HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            9999888 99999999888764 3445554455554 4446665533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.95  E-value=1.7e-23  Score=209.37  Aligned_cols=353  Identities=14%  Similarity=0.035  Sum_probs=202.9

Q ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHH-HHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHH-HHHHHHHHHH
Q 013096           56 QRNFLLLFSLASVMEGLWSVFGEYE-LVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCL-IFFILHLFVG  133 (449)
Q Consensus        56 ~~~~~~~~~l~~~~~~~~~~~~~~l-~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll-~~~~~~~~~~  133 (449)
                      ...++...++...+..+..|+.+.. .+++|.|++++|.+.+...+...+.+++.|.++||+||||.++ .+.+..++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~   96 (393)
T PRK15011         17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLAC   96 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            3445566677777777788887664 4689999999999877666655555556555599999998865 4445444544


Q ss_pred             H-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 013096          134 V-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKK  212 (449)
Q Consensus       134 l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~  212 (449)
                      . ..++++++.+++.+.+.|...+...+...+ +..+..+++  +++.+...+....+..++.+++|.+++++.+..   
T Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~---  170 (393)
T PRK15011         97 TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFA-LAREHADKT--GREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF---  170 (393)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhhhc--cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc---
Confidence            4 667888988766655444333444455443 333332111  112233334555566677888999999988755   


Q ss_pred             CcchhHHHHHHHHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChh-HHHHHHHHHHHHHHHHHHHHHhhhhhccC--
Q 013096          213 GVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKR-IWLLVLAQACLQFSIALFWILWAPTLVAD--  289 (449)
Q Consensus       213 g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--  289 (449)
                      |||..|+..+...++..+......||.+++++++..  ..+...++++ .+........... .+.....|.|.+.++  
T Consensus       171 gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~l~~~~  247 (393)
T PRK15011        171 SFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--TLEAPRRNRRDTLLLFVICTLMWG-TNSLYIINMPLFIINEL  247 (393)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--cccccccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence            999999886665544444444445665432211110  1111223333 2222222222222 232234467877654  


Q ss_pred             C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhh
Q 013096          290 G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLIL  368 (449)
Q Consensus       290 ~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~  368 (449)
                      + ++.+.+.+.....++.+++..+.+++.|   |+++++....+.....+........+ +.+..+....+.+++.|...
T Consensus       248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~d---r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~~~g~~~  323 (393)
T PRK15011        248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAK---RLGKRFLMRVAAVAGVCFYAGMLMAH-SPAILLGLQLLNAIYIGILG  323 (393)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Confidence            2 3344666665555667788899999999   78877765544333222222222222 22222333333444555555


Q ss_pred             hHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhH-HhhhcchhHHHHHHH
Q 013096          369 PSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRG-FYRNIENAAMVAFAA  422 (449)
Q Consensus       369 p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~  422 (449)
                      +....+.+|..|+ .||+++++.+...+++...++..++ ..+..+.+..+.++.
T Consensus       324 ~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~  377 (393)
T PRK15011        324 GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFAL  377 (393)
T ss_pred             HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6666677888885 4999999987777776555555444 445456555444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.94  E-value=9.3e-24  Score=217.73  Aligned_cols=334  Identities=14%  Similarity=0.093  Sum_probs=210.0

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHH
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANI  149 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~  149 (449)
                      ....+..+.+.+++|.|+.+.+.+.+..+++..+++++.|+++||+|||++++.+.++.+++++ +.+++|++.+++.|+
T Consensus        37 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  116 (496)
T PRK03893         37 VLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARL  116 (496)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3456677788889999999999999999999999999999999999999999999988888776 777899999999999


Q ss_pred             HHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          150 CLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       150 l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      ++|++.+...+...+ ++.|.    +++++.++.++.......++.+++|.+++++.+.+   +||+.|.+.....++..
T Consensus       117 l~G~~~~~~~~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~w~~~f~~~~~~~~~~~  188 (496)
T PRK03893        117 VIGMGMAGEYGSSAT-YVIES----WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW---GWRALFFIGILPIIFAL  188 (496)
T ss_pred             HHHHHHHHHHHHHHH-HHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHH
Confidence            999998877766554 33333    45555677777777777788888999888887754   89999887655444332


Q ss_pred             HHHHhccccCCCC--Cc-chhh-hhhhHhhhcC-hhHHH---------------------------H-------------
Q 013096          230 ICVSRGWTENPKM--AF-DDYR-TSFFTYIFGD-KRIWL---------------------------L-------------  264 (449)
Q Consensus       230 ~~i~~~~~e~~~~--~~-~~~~-~~~~~~l~~~-~~~~~---------------------------~-------------  264 (449)
                       ...+..||+++.  ++ ++.. ++..+...++ ++...                           .             
T Consensus       189 -~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
T PRK03893        189 -WLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMV  267 (496)
T ss_pred             -HHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHH
Confidence             233345554321  10 0000 0001111110 00000                           0             


Q ss_pred             -----------HHHHHHHHHHHHH-HHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHH
Q 013096          265 -----------VLAQACLQFSIAL-FWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCL  329 (449)
Q Consensus       265 -----------~~~~~~~~~~~~~-~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l  329 (449)
                                 ......+....+. ....+.|.++++  + +..+.+.+.+...++.++|..+.+++.|   |+++++.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d---r~g~~~~~  344 (496)
T PRK03893        268 QSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD---WLGTRKAY  344 (496)
T ss_pred             HhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHH
Confidence                       0000000000000 123467877742  2 3456778888888889999999999999   78877766


Q ss_pred             HHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHH-HHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-h
Q 013096          330 LYAFVVLGFVFSIIAY-DYQEIGILVALFCLFH-ACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-R  406 (449)
Q Consensus       330 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~-~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g  406 (449)
                      ..+..+.++....... ...+.+.........+ .+.+ ..+...++.++.+|++.||+++|+.+...+++...++.. |
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g  423 (496)
T PRK03893        345 VCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQG-ISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGA  423 (496)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcc-cchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHH
Confidence            6554433333222222 2222221111111212 2222 345556677899999999999999887777765455554 4


Q ss_pred             HHhhhcchhHH
Q 013096          407 GFYRNIENAAM  417 (449)
Q Consensus       407 ~~~~~~~~~~~  417 (449)
                      ...+..+....
T Consensus       424 ~l~~~~g~~~~  434 (496)
T PRK03893        424 LIAQRLDLGTA  434 (496)
T ss_pred             HHhccCChHHH
Confidence            44455665443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.94  E-value=1e-23  Score=216.15  Aligned_cols=316  Identities=12%  Similarity=0.015  Sum_probs=187.3

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ...|+.+.+.+++|+|+.|.+.+.+..+++..+++++.|+++||+|||+++..+.++++++.+ +.+++|++.+++.|++
T Consensus        54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l  133 (476)
T PLN00028         54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFF  133 (476)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            456778888899999999999988888888899999999999999999999998888887765 7778999999999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHH----HhHHHHHHHHHHHHHHhcc--cccCCcchhHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTF----FESAALIGGQVLANWLVGI--DVKKGVVPSSTASVFL  224 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~----~~~~~~i~a~~lg~~l~~~--~~~~g~~~~f~~~~~~  224 (449)
                      +|++.+...+. .. .+.|.    +++++.+++.+....    +..+++.+.|.+...+.+.  ....|||+.|++.+++
T Consensus       134 ~G~~~~~~~~~-~~-~i~~~----~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l  207 (476)
T PLN00028        134 IGFSLATFVSC-QY-WMSTM----FNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLL  207 (476)
T ss_pred             HHHHHHhhHHH-HH-HHHHh----cChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence            99998754332 22 33443    333344455554432    3333333344443332221  0013899999986655


Q ss_pred             HHHHHHHHHhccccCCCCC----cch------hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-C
Q 013096          225 SILGIICVSRGWTENPKMA----FDD------YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-R  291 (449)
Q Consensus       225 ~~~~~~~i~~~~~e~~~~~----~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~  291 (449)
                      .++..+...+..++.++.+    +++      ...+.+++.+++++++.+.+...+.... ......|.|.++.+  + +
T Consensus       208 ~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~l~~~~g~s  286 (476)
T PLN00028        208 HIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGV-ELTMDNIIAEYFYDRFGLS  286 (476)
T ss_pred             HHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHH-HHHHHhHHHHHHHHhcCCC
Confidence            5444333333222222111    000      0112356677888887665543332222 22234577877643  3 3


Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCch-----h-HH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTE-----D-CL-LYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACV  364 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~-----~-~l-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  364 (449)
                      ....+.......++.++|..+.++++|   |+++|     | .. .....+.++......... +....+..+++++++.
T Consensus       287 ~~~a~~~~~~~~~~~~ig~~~~G~lsD---r~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~-~~~~~~~~~~l~~~~~  362 (476)
T PLN00028        287 LETAGAIAASFGLMNLFARPAGGYLSD---VAARRFGMRGRLWALWIVQTLGGVFCIWLGRAN-SLGAAIVVMILFSIFV  362 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHhcCcchhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHH
Confidence            344566666777788889999999998   44322     2 12 222222333222222222 2222233334444444


Q ss_pred             hhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH
Q 013096          365 GLILPSLARLRTMYVPNELRGGMISLSLAPANAAI  399 (449)
Q Consensus       365 g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~  399 (449)
                      +...+...++..+.. ++.||++.|+.+...+++.
T Consensus       363 ~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~  396 (476)
T PLN00028        363 QAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGA  396 (476)
T ss_pred             HHhhhhhcccCcccC-hhhchhhhhhhhccccHHH
Confidence            444444445555554 4789999998766555543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=1e-23  Score=216.48  Aligned_cols=337  Identities=12%  Similarity=0.060  Sum_probs=201.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhh----hHHHHHHHHHh--------CCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHH
Q 013096           54 PFQRNFLLLFSLASVMEGLW----SVFGEYELVYY--------GVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKV  121 (449)
Q Consensus        54 ~~~~~~~~~~~l~~~~~~~~----~~~~~~l~~~~--------g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~  121 (449)
                      +.+.+...+..++.+.++++    ++..+.+.+++        +.++.+.+++.+..+++..+++++.|+++||+||||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~   87 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            45566666666666666543    44445555555        8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHh------------cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 013096          122 CLIFFILHLFVGV-WKSI------------TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT  188 (449)
Q Consensus       122 ll~~~~~~~~~~l-~~~~------------~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~  188 (449)
                      ++.+.+++.++.+ +++.            ++++.+++.|+++|++.|...+...+ ++.|..    ++++.++.++..+
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~-~i~e~~----~~~~rg~~~~~~~  162 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPM-YIAEIA----PAHIRGKLVSFNQ  162 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHH-HHHhhC----ChhhhhHHHHHHH
Confidence            9999999887665 4431            23567899999999999998887655 455553    3344556666666


Q ss_pred             HHhHHHHHHHHHHHHHHhcc-----cccCCcchhHHHHHHHHHHHHHHHHhccccCCCC----Ccchh------------
Q 013096          189 FFESAALIGGQVLANWLVGI-----DVKKGVVPSSTASVFLSILGIICVSRGWTENPKM----AFDDY------------  247 (449)
Q Consensus       189 ~~~~~~~i~a~~lg~~l~~~-----~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~----~~~~~------------  247 (449)
                      ....++.++++.++..+...     ...++||++|++.++..++..+. ....||+++.    ++++.            
T Consensus       163 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~  241 (479)
T PRK10077        163 FAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNT  241 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh
Confidence            55556666666655544311     01358999999876665555433 3456887531    10000            


Q ss_pred             -hh---hhhHhhhc-----ChhHHHHH---HHH----HHH-HHHHHHHHHHhhhhhccC-CC-ccchHHHHHHHHHHHHH
Q 013096          248 -RT---SFFTYIFG-----DKRIWLLV---LAQ----ACL-QFSIALFWILWAPTLVAD-GR-EVHLGLIFPSLLGARML  308 (449)
Q Consensus       248 -~~---~~~~~l~~-----~~~~~~~~---~~~----~~~-~~~~~~~~~~~~p~~~~~-~~-~~~~g~i~~~~~~~~~l  308 (449)
                       .+   +..++..+     +++.+...   +..    ..+ ....+....++.|.+..+ +. ....+.......+...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i  321 (479)
T PRK10077        242 LATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT  321 (479)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence             00   01111111     11111110   000    001 011111223456766543 22 22233444445567788


Q ss_pred             hhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhc--ccchh-HHHHHHHHHHHHHhhh-hhhHHHHHHhccCCCcch
Q 013096          309 GSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAY--DYQEI-GILVALFCLFHACVGL-ILPSLARLRTMYVPNELR  384 (449)
Q Consensus       309 g~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~l~~~~~g~-~~p~~~~~~~~~~p~~~r  384 (449)
                      ++.+.+++.|   |+++|+.+..+..+.+++......  ..+.. .......+.++++.+. ..|....+.+|.+|+++|
T Consensus       322 ~~~~~g~l~d---r~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  398 (479)
T PRK10077        322 FTVLAIMTVD---KFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR  398 (479)
T ss_pred             HHHHHHHHHH---HhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHH
Confidence            8999999999   788887777666555544433221  11111 1122223333333333 237778889999999999


Q ss_pred             hHHHHhhHHHHHHHH
Q 013096          385 GGMISLSLAPANAAI  399 (449)
Q Consensus       385 g~~~~~~~~~~~~~~  399 (449)
                      ++++|+.....+++.
T Consensus       399 ~~~~g~~~~~~~~g~  413 (479)
T PRK10077        399 GKALAIAVAAQWIAN  413 (479)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998877666554

>TIGR00898 2A0119 cation transport protein

Probab=99.94  E-value=2.6e-24  Score=222.37  Aligned_cols=352  Identities=14%  Similarity=0.047  Sum_probs=219.7

Q ss_pred             HHHHHHHHHhCCC---hHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           75 VFGEYELVYYGVA---KEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        75 ~~~~~l~~~~g~s---~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ++.+.+.+|++++   +.+.++..+..+++..+++++.|+++||+|||++++++.++..++++ +++++|++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4455666799998   89999999999999999999999999999999999999988888776 7788999999999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      +|++.+...+...+ ++.|.    .++++.++..+.......++.+++|.++..+.      +||+.|.+..+..++..+
T Consensus       190 ~G~~~~~~~~~~~~-~~~e~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~  258 (505)
T TIGR00898       190 VGMGIGGIWVQAVV-LNTEF----LPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFL  258 (505)
T ss_pred             HHhhccchHHHHHH-Hhhee----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHH
Confidence            99999987766543 44443    33344455555555555666677777765542      588898877665555444


Q ss_pred             HHHhccccCCCC-------Cc--c-----------------------h---hh--hhhhHhhhcChhHHHHHHHHHHHHH
Q 013096          231 CVSRGWTENPKM-------AF--D-----------------------D---YR--TSFFTYIFGDKRIWLLVLAQACLQF  273 (449)
Q Consensus       231 ~i~~~~~e~~~~-------~~--~-----------------------~---~~--~~~~~~l~~~~~~~~~~~~~~~~~~  273 (449)
                      .. ...||+++.       ++  +                       +   ..  +..+++++++|+.+...+...+...
T Consensus       259 ~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  337 (505)
T TIGR00898       259 LS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF  337 (505)
T ss_pred             HH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH
Confidence            33 346776421       00  0                       0   00  0245677888777655443322221


Q ss_pred             HHHHHHHHhhhhhccCCCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccch-hHH
Q 013096          274 SIALFWILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQE-IGI  352 (449)
Q Consensus       274 ~~~~~~~~~~p~~~~~~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~  352 (449)
                      .. .+.....+....+ ............++..+.+..+.+++.|   |+++|+.+.....+.+++.+.....++. .+.
T Consensus       338 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~d---r~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~  412 (505)
T TIGR00898       338 TT-AFSYYGLVLDLGN-LGGNIYLDLFISGLVELPAKLITLLLID---RLGRRYTMAASLLLAGVALLLLLFVPVDLYFL  412 (505)
T ss_pred             HH-HHHHHHHhccccc-cCCChHHHHHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHcCCCchHH
Confidence            11 1111112222211 1111222223344566778888999999   7888877776665555554443333222 122


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhcchhHH-HHHHHHHHHHHHHH
Q 013096          353 LVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAM-VAFAALGLFIAAGC  431 (449)
Q Consensus       353 ~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~  431 (449)
                      .....++..++.+..++....+.+|.+|++.|++++|+.+....++...++.+.++ ++.+.... .+++++.++ +.+.
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~-~~~~~~~~~~~~~~~~~~-~~~~  490 (505)
T TIGR00898       413 RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYL-GEKWLFLPLVLFGGLALL-AGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHH-HHHHHhhHHHHHHHHHHH-HHHH
Confidence            23333444556666778888888999999999999999888777765555544333 33332222 333333333 3334


Q ss_pred             HHHHHHhhcCCCcc
Q 013096          432 MHVLKRWGKQPYQN  445 (449)
Q Consensus       432 ~~~~~~~~~~~~~~  445 (449)
                      ..+++++++++.+|
T Consensus       491 ~~~lpet~~~~l~~  504 (505)
T TIGR00898       491 TLFLPETKGVPLPE  504 (505)
T ss_pred             HHcCcCCCCCCCCC
Confidence            45566666555443

>TIGR00895 2A0115 benzoate transport

Probab=99.94  E-value=1.9e-23  Score=208.20  Aligned_cols=321  Identities=17%  Similarity=0.180  Sum_probs=210.3

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ..+++.|.+.+++|.++.+++.+.+...++..+++++.|+++||+|||+++..+.++..++.+ +...+|++.+++.|++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (398)
T TIGR00895        35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFL  114 (398)
T ss_pred             HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            345666777789999999999999999999999999999999999999999999888877665 6678899999999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      +|++.+...+...+ ++.|.    .++++.++.++.......++..+++.+++++.+..   +|+..|.+.+....+..+
T Consensus       115 ~g~~~~~~~~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~~~~~~~~~~~~~~  186 (398)
T TIGR00895       115 AGLGLGGLMPNLNA-LVSEY----APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF---GWRSLFYVGGIAPLLLLL  186 (398)
T ss_pred             HhcccccchhhHHH-HHHHH----cCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc---cceeehhhhhhHHHHHHH
Confidence            99999887776655 34443    23344556667666666777788888888887755   888888876443333333


Q ss_pred             HHHhccccCCCC---C--cc------------------------h---hhhhhhHhhhcChh---HHHHHHHHHHHHHHH
Q 013096          231 CVSRGWTENPKM---A--FD------------------------D---YRTSFFTYIFGDKR---IWLLVLAQACLQFSI  275 (449)
Q Consensus       231 ~i~~~~~e~~~~---~--~~------------------------~---~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~  275 (449)
                      +.....||+++.   +  ++                        +   ..++.++.++++++   .+.+..... .....
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  265 (398)
T TIGR00895       187 LLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYF-MLLVG  265 (398)
T ss_pred             HHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHH-HHHHH
Confidence            333344554321   0  00                        0   00111222333322   222222211 22222


Q ss_pred             HHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHH
Q 013096          276 ALFWILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGIL  353 (449)
Q Consensus       276 ~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  353 (449)
                      +.....|.|.+..+ + ++...+.......++.++|..+.+++.|   |+++++.. ....+.++..........+....
T Consensus       266 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  341 (398)
T TIGR00895       266 VYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLAD---RLGPRVTA-LLLLLGAVFAVLVGSTLFSPTLL  341 (398)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcchHHHH-HHHHHHHHHHHHHHHHhhCHHHH
Confidence            33345577855543 2 3445677777778888999999999999   67665333 22222222222222211222333


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH
Q 013096          354 VALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL  405 (449)
Q Consensus       354 ~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~  405 (449)
                      ....++.+++.+...+...++.+|.+|++.||+++|+.+...+++...++..
T Consensus       342 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  393 (398)
T TIGR00895       342 LLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL  393 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455566777888888899999999999999999999888777765445443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.93  E-value=2.7e-22  Score=200.98  Aligned_cols=304  Identities=11%  Similarity=-0.012  Sum_probs=183.7

Q ss_pred             HHHHHhh-hhhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh---
Q 013096           65 LASVMEG-LWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI---  138 (449)
Q Consensus        65 l~~~~~~-~~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~---  138 (449)
                      ...+..| +.+|..+.+-+ ++|+|++|.+++.++..+++.++.++.|++.||+|.|+++.++.++.++.++ +.++   
T Consensus        44 ~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~  123 (462)
T PRK15034         44 LLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN  123 (462)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4444555 35677766665 8999999999999999999999999999999999999999999998887765 6655   


Q ss_pred             --cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHH----HHHHHHHHH-HHhccc--
Q 013096          139 --TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAA----LIGGQVLAN-WLVGID--  209 (449)
Q Consensus       139 --~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~----~i~a~~lg~-~l~~~~--  209 (449)
                        +|++.+++.|++.|++ +..++.... .++    +-+++++.+++++.....+..+    ..++|.+.. .+....  
T Consensus       124 ~~~s~~~lli~r~l~Gig-g~~f~~~~~-~vs----~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~  197 (462)
T PRK15034        124 PNTPFGIFIVIALLCGFA-GANFASSMG-NIS----FFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGV  197 (462)
T ss_pred             cCCCHHHHHHHHHHHHHH-HHhHHHHHH-HHH----HHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence              7999999999999998 444444322 222    3356666777777664333333    334443322 121211  


Q ss_pred             --------ccCCcchhHHHHHHHHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHH
Q 013096          210 --------VKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWIL  281 (449)
Q Consensus       210 --------~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (449)
                              ...+||..+++-.++.++..++.++..++.++ + ++ ..+.+..++|||++|.+++...+.++.+..+ ..
T Consensus       198 ~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~-~~-~~~~~~~vlk~~~~Wllslly~~tFG~fvg~-s~  273 (462)
T PRK15034        198 NGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-S-RA-SIADQLPVLQRLHLWLLSLLYLATFGSFIGF-SA  273 (462)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-c-cc-CHHHHHHHhCCCchhHHHHHHHHHHHHHHHH-HH
Confidence                    01135555555444443433333333333221 1 11 1234667999999998887665555443333 55


Q ss_pred             hhhhhccCCCc-cchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH--Hhccc---chhHHHHH
Q 013096          282 WAPTLVADGRE-VHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSI--IAYDY---QEIGILVA  355 (449)
Q Consensus       282 ~~p~~~~~~~~-~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~--~~~~~---~~~~~~~~  355 (449)
                      |.|.+.++..+ ...........+...++.++.|++.|   |++.+|++..++..+.++...  .....   .+.+....
T Consensus       274 ~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LAD---RiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~  350 (462)
T PRK15034        274 GFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISD---KFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYA  350 (462)
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHH---hcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            78888765322 21111111223456677789999999   888888777665444333221  11211   12333344


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhccCCC
Q 013096          356 LFCLFHACVGLILPSLARLRTMYVPN  381 (449)
Q Consensus       356 ~~~l~~~~~g~~~p~~~~~~~~~~p~  381 (449)
                      .++...++.|+.+.+...++.+.+|+
T Consensus       351 ~~~~l~~~~G~gngsvfk~ip~~f~~  376 (462)
T PRK15034        351 VFMGLFLTAGLGSGSTFQMIAVIFRQ  376 (462)
T ss_pred             HHHHHHHHhcccchHHHHhhHHHHhh
Confidence            44444566676666666666666664

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.93  E-value=2.1e-22  Score=200.80  Aligned_cols=331  Identities=15%  Similarity=0.100  Sum_probs=211.4

Q ss_pred             HHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCch----HHHHHHHHHHHHHHHHHHhcchh
Q 013096           67 SVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQK----KVCLIFFILHLFVGVWKSITAHP  142 (449)
Q Consensus        67 ~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr----~~ll~~~~~~~~~~l~~~~~s~~  142 (449)
                      ..+.++..|++|...+|+|.|+.++|++.+++.+...+++++.|+++||+|||    +.+.+....... ..+..++|++
T Consensus        17 ~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   95 (382)
T PRK11128         17 FFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-AFWFGAHSFW   95 (382)
T ss_pred             HHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-HHHHhcccHH
Confidence            34456788999888899999999999999999999999999999999999994    333322222211 1234468899


Q ss_pred             HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHH
Q 013096          143 SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASV  222 (449)
Q Consensus       143 ~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~  222 (449)
                      .+++.|+++|++.+...+..++ +..+..++  +    ++.++.....+.++..++|.+++++.+++   |||.+|+..+
T Consensus        96 ~l~i~~~l~g~~~~~~~~~~~a-~~~~~~~~--~----~~a~~~~~~~~~lg~~igp~lgg~l~~~~---g~~~~f~~~~  165 (382)
T PRK11128         96 LLFVAIGLFNLFFSPLVPLTDA-LANTWQKQ--I----GLDYGKVRLWGSIAFVIGSALTGKLVSWF---GEQAILWILT  165 (382)
T ss_pred             HHHHHHHHHHHHHcccccHHHH-HHHHHHhh--c----cCCcchHHHHHHHHHHHHHHHHHHHHHHc---ChhHHHHHHH
Confidence            9999999999998877776554 33333211  1    11222333344566778999999988765   8999998765


Q ss_pred             HHHHHHHHHHHhccccCCCCCc--ch--hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchH
Q 013096          223 FLSILGIICVSRGWTENPKMAF--DD--YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLG  296 (449)
Q Consensus       223 ~~~~~~~~~i~~~~~e~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g  296 (449)
                      ...++..+... ..||.+++++  ++  ...+.+++++|||+++...+...+.......+ ....|.+.++ + ++...|
T Consensus       166 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~g~s~~~~g  243 (382)
T PRK11128        166 AGVASMLLGQL-LRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAY-YGFSAIYWQAAGYSASTIG  243 (382)
T ss_pred             HHHHHHHHHHH-ccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhH-HHHHHHHHHHCCCCHhHHH
Confidence            54443333232 3344332211  11  11245789999999887655444443332222 2234555443 2 344578


Q ss_pred             HHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 013096          297 LIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRT  376 (449)
Q Consensus       297 ~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~  376 (449)
                      ..++...++.+++..+.+++.|   |+++++.+..+....++........+ +.+..+...++.+++.+...+....+..
T Consensus       244 ~~~~~~~~~~~~~~~~~g~l~~---r~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~  319 (382)
T PRK11128        244 YLWSLGVVAEVLIFAFSNRLFR---RWSARDLLLLSAICGVVRWGLMGSTT-ALPWLIVIQILHCGTFTVCHLAAMRYIA  319 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777888889999998   78888877766655555444333332 3344455566677788888888888877


Q ss_pred             ccCCCcchhHHHHhhHHH-HHHHHHHHHHH-hHHhhhcchh
Q 013096          377 MYVPNELRGGMISLSLAP-ANAAILLFLLL-RGFYRNIENA  415 (449)
Q Consensus       377 ~~~p~~~rg~~~~~~~~~-~~~~~~~~~~~-g~~~~~~~~~  415 (449)
                      +. |++++++..+..... .+.+...++.. |.+.+..+..
T Consensus       320 ~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~  359 (382)
T PRK11128        320 AR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG  359 (382)
T ss_pred             HC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            76 566678888876533 33343334444 4445655543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=1.3e-23  Score=214.38  Aligned_cols=358  Identities=15%  Similarity=0.118  Sum_probs=208.9

Q ss_pred             hhHHHHHHHHHhCCC--------hHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh---cc
Q 013096           73 WSVFGEYELVYYGVA--------KEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI---TA  140 (449)
Q Consensus        73 ~~~~~~~l~~~~g~s--------~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~---~s  140 (449)
                      ..+..+.+..+++.+        ..+.+++.+...++..+++++.|+++||+||||+++.+.+++.++++ +...   .+
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~  126 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS  126 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344555556666666        88999999999999999999999999999999999999998888765 5333   45


Q ss_pred             hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHH---HHHhcccccCCcchh
Q 013096          141 HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLA---NWLVGIDVKKGVVPS  217 (449)
Q Consensus       141 ~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg---~~l~~~~~~~g~~~~  217 (449)
                      ++.+++.|+++|++.+...+...+ ++.|.    .++++.++..+.......++.++++.++   ....+.   .+||++
T Consensus       127 ~~~~~~~r~l~G~~~~~~~~~~~~-~i~~~----~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~---~~w~~~  198 (481)
T TIGR00879       127 VEMLIVGRVLLGIGVGIASALVPM-YLSEI----APKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT---LGWRIP  198 (481)
T ss_pred             hHHHHHHHHHHHhhhhHHHhHHHH-HHHcc----CChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC---ccHHHH
Confidence            568999999999999987766543 44443    3444556667776666677777888877   444333   489999


Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCC-----Ccch---h----------h----h-----------------hhhHhhhcC
Q 013096          218 STASVFLSILGIICVSRGWTENPKM-----AFDD---Y----------R----T-----------------SFFTYIFGD  258 (449)
Q Consensus       218 f~~~~~~~~~~~~~i~~~~~e~~~~-----~~~~---~----------~----~-----------------~~~~~l~~~  258 (449)
                      |.+.+...++..+. ....||+++.     +.++   .          .    +                 ..++.+++.
T Consensus       199 f~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (481)
T TIGR00879       199 LGLQLIPAGLLFLG-LFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSS  277 (481)
T ss_pred             HHHHHHHHHHHHHH-HhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhc
Confidence            99865555444332 3345665321     0000   0          0    0                 001122221


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHH
Q 013096          259 -----KRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLY  331 (449)
Q Consensus       259 -----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~  331 (449)
                           ++.........+...........+.|.+.++ + +....+.......++.+++..+.+++.|   |+++++.+..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d---~~~~~~~~~~  354 (481)
T TIGR00879       278 TRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD---RFGRRPLLLI  354 (481)
T ss_pred             CchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHH
Confidence                 1111111111111111112234456766543 3 2333455555666778889999999999   7777777666


Q ss_pred             HHHHHHHHHHHHh---cccch------hHHHHHHHHHHHHHhhh-hhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHH
Q 013096          332 AFVVLGFVFSIIA---YDYQE------IGILVALFCLFHACVGL-ILPSLARLRTMYVPNELRGGMISLSLAPANAAILL  401 (449)
Q Consensus       332 ~~~~~~~~l~~~~---~~~~~------~~~~~~~~~l~~~~~g~-~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~  401 (449)
                      +..+.++++....   ....+      ....+...+++..+.+. ..+....+..|.+|++.||+++++.+...+++...
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i  434 (481)
T TIGR00879       355 GAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI  434 (481)
T ss_pred             HHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence            5544444433322   11111      12222222233333332 23566677789999999999999988887776544


Q ss_pred             HHH-HhHHhhhcchhHHH-HHHHHHHHHHHHHHHHHHHhhcCC
Q 013096          402 FLL-LRGFYRNIENAAMV-AFAALGLFIAAGCMHVLKRWGKQP  442 (449)
Q Consensus       402 ~~~-~g~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~  442 (449)
                      ++. .+.+.++.+....+ ..++++++.+.......++.++++
T Consensus       435 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~  477 (481)
T TIGR00879       435 VGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRT  477 (481)
T ss_pred             HHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCC
Confidence            443 35455544443322 233333333333333345444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.93  E-value=6.9e-23  Score=211.62  Aligned_cols=389  Identities=11%  Similarity=0.036  Sum_probs=223.7

Q ss_pred             CcchhhhHHHHHHHHHHHHHhhhh----hHHHHHHHHH-----hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchH
Q 013096           50 SSFVPFQRNFLLLFSLASVMEGLW----SVFGEYELVY-----YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK  120 (449)
Q Consensus        50 ~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~l~~~-----~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~  120 (449)
                      -++.+.|.....+..++.+.|+++    +...+.+-.+     .+.++.+.+++.+...++..+++++.|+++||+|||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~   87 (502)
T TIGR00887         8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR   87 (502)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            345677777776666777776654    3333333232     2345566778888898999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHhcc------hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHH
Q 013096          121 VCLIFFILHLFVGV-WKSITA------HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESA  193 (449)
Q Consensus       121 ~ll~~~~~~~~~~l-~~~~~s------~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~  193 (449)
                      ++.++.+++.++++ ++++++      ++.+++.|+++|++.|...+.... ++.|.    .|.++.++..+.......+
T Consensus        88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~-~~~e~----~p~~~Rg~~~~~~~~~~~~  162 (502)
T TIGR00887        88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAI-ITSEF----ATKKWRGAMMAAVFAMQGF  162 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHh----cChhhHHHHHHHHHHHHHH
Confidence            99999998888765 666655      789999999999999988776543 55665    3444556666666555555


Q ss_pred             HHHHHHHHHHHHhcc--------------------cccCCcchhHHHHHHHHHHHHHHHHhccccCCC------CCcch-
Q 013096          194 ALIGGQVLANWLVGI--------------------DVKKGVVPSSTASVFLSILGIICVSRGWTENPK------MAFDD-  246 (449)
Q Consensus       194 ~~i~a~~lg~~l~~~--------------------~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~------~~~~~-  246 (449)
                      +.++++.++.++...                    ..+|+||++|.+..+..++..+. .+..||+++      +++++ 
T Consensus       163 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~-~~~lpESpr~l~~~~~~~~~a  241 (502)
T TIGR00887       163 GILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYF-RLTIPETPRYTADVAKDVEQA  241 (502)
T ss_pred             HHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHhCcchHHH
Confidence            566666665544220                    00358999998877766655443 345688753      11000 


Q ss_pred             -----------------h----------hhhhhHhhhcC---hhHHHHHH---HHHHHHHHHHHHHHHhhhhhccC-CC-
Q 013096          247 -----------------Y----------RTSFFTYIFGD---KRIWLLVL---AQACLQFSIALFWILWAPTLVAD-GR-  291 (449)
Q Consensus       247 -----------------~----------~~~~~~~l~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~-~~-  291 (449)
                                       .          .+..+++++++   ++.+...+   ...+.....++....|.|.+.++ +. 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~  321 (502)
T TIGR00887       242 ASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYS  321 (502)
T ss_pred             HHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCC
Confidence                             0          00135555542   22211111   11111111222334567777643 21 


Q ss_pred             ccchH-----------H-HHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc-c-hhHHHHHHH
Q 013096          292 EVHLG-----------L-IFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY-Q-EIGILVALF  357 (449)
Q Consensus       292 ~~~~g-----------~-i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~  357 (449)
                      ....+           . ......++.++|..+.+++.|   |+++|+.+..+..+.++++.+..... + +.......+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d---r~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  398 (502)
T TIGR00887       322 PPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVD---IIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIY  398 (502)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            11100           0 111223455678888999999   78888776665554444433222211 0 111111111


Q ss_pred             HHHHHH-hhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhh----------cchh-HHHHHHHHH
Q 013096          358 CLFHAC-VGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRN----------IENA-AMVAFAALG  424 (449)
Q Consensus       358 ~l~~~~-~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~----------~~~~-~~~~~~~~~  424 (449)
                      +...+. .....+....+..|.+|++.|+++.|+.+....++...++.. +.+.+.          .+.. ...+++++.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  478 (502)
T TIGR00887       399 VLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFM  478 (502)
T ss_pred             HHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHH
Confidence            111111 112345566677899999999999999887777665444433 333331          2222 233444444


Q ss_pred             HHHHHHHHHHHHHhhcCCCccccC
Q 013096          425 LFIAAGCMHVLKRWGKQPYQNWHK  448 (449)
Q Consensus       425 ~l~~~~~~~~~~~~~~~~~~~~~~  448 (449)
                      ++.+ +...++++++.++.+|.++
T Consensus       479 ~~~~-i~~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       479 FLGI-LFTLLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHH-HHheEeccCCCCCHHhhhC
Confidence            4333 3344567777777777764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.93  E-value=6.5e-23  Score=208.19  Aligned_cols=331  Identities=10%  Similarity=-0.007  Sum_probs=196.9

Q ss_pred             HHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh----cchhHHHHHHHHHHhH
Q 013096           80 ELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI----TAHPSVWVANICLSLA  154 (449)
Q Consensus        80 l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~----~s~~~l~~~R~l~Glg  154 (449)
                      ..+++|+|++|.+++.+...++..++.++.|+++||+|||+++..+.++.+++++ +...    ++++.+.+.|++.|++
T Consensus        52 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~  131 (438)
T TIGR00712        52 YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWF  131 (438)
T ss_pred             HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence            3445799999999999999999999999999999999999999998888887765 3332    4678889999999999


Q ss_pred             HHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHh
Q 013096          155 SSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSR  234 (449)
Q Consensus       155 ~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~  234 (449)
                      .+...+.... .+.|.    +++++.++.++.......++..+++.+.+...+..  .+||..|++..+..++..+....
T Consensus       132 ~g~~~~~~~~-~i~~~----~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~w~~~f~~~~~~~~i~~~~~~~  204 (438)
T TIGR00712       132 QGMGWPPCGR-TMVHW----WSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF--NDWHAALYFPAICAIIVALFAFA  204 (438)
T ss_pred             hhcchHHHHH-HHHHh----cCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHH
Confidence            8876665443 23332    44445666777666665566666666555443321  38999998866554443333333


Q ss_pred             ccccCCCC----C----cc--------hhh-----hhh-hHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C
Q 013096          235 GWTENPKM----A----FD--------DYR-----TSF-FTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G  290 (449)
Q Consensus       235 ~~~e~~~~----~----~~--------~~~-----~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~  290 (449)
                      ..||++++    +    ++        +.+     ++. .+.+++|++++...+...+.+...+. ...|.|.++++  +
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g  283 (438)
T TIGR00712       205 MMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYG-VLDWSPTYLKEVKH  283 (438)
T ss_pred             hccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHH-HHHhHHHHHHHccC
Confidence            34443211    0    00        000     111 23467888887765554444433333 34578888764  2


Q ss_pred             -CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCch-hHHHHH-HHHHH-HHHHHHhcc-cchhHHHHHHHHHHHHHhh
Q 013096          291 -REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTE-DCLLYA-FVVLG-FVFSIIAYD-YQEIGILVALFCLFHACVG  365 (449)
Q Consensus       291 -~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~-~~l~~~-~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~~~~g  365 (449)
                       +....++......++.++|..+.+++.|   |++++ +..... ..... +........ ..+.+.....++..+++..
T Consensus       284 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~d---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  360 (438)
T TIGR00712       284 FALDKSSWAYFLYEYAGIPGTLLCGWMSD---KVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIY  360 (438)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHH---HhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHc
Confidence             3445677777777788899999999999   55322 222211 11111 111111111 1122222222222222211


Q ss_pred             hhhhHHHHHHhccCCCcchhHHHHhhHHHHHHH-HHHHHH-HhHHhhhcchhHHHHHH
Q 013096          366 LILPSLARLRTMYVPNELRGGMISLSLAPANAA-ILLFLL-LRGFYRNIENAAMVAFA  421 (449)
Q Consensus       366 ~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~~  421 (449)
                      ...+.......|..|++.||+++|+.+...+.+ ...++. .|.+.+..+++..+.+.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~  418 (438)
T TIGR00712       361 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM  418 (438)
T ss_pred             cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHH
Confidence            111222345678899999999999988766654 333433 34555666665554433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.93  E-value=2.6e-23  Score=212.70  Aligned_cols=318  Identities=11%  Similarity=-0.020  Sum_probs=204.7

Q ss_pred             HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH--HhcchhHHHHHHHHHHhHHHHhh
Q 013096           83 YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK--SITAHPSVWVANICLSLASSIFS  159 (449)
Q Consensus        83 ~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~--~~~s~~~l~~~R~l~Glg~~~~~  159 (449)
                      |+++++.+.|.+.+.+++++.+++++.|+++||+|||+++..+.++.+++++ +.  ..++++.+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            7899999999999999999999999999999999999999999988887765 33  33678899999999999999888


Q ss_pred             hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccC
Q 013096          160 FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTEN  239 (449)
Q Consensus       160 ~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~  239 (449)
                      +....+ ++|    -+++++.++..+....+..++.+++|.+++++.+.+  .+||++|.+..+..++..+..+...+|+
T Consensus       150 ~~~~~~-~~~----~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       150 PATHKI-IVK----WAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             hhHHHH-HHh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            776543 333    345566778888877777788888999988887641  2899999986665444433333333443


Q ss_pred             CCC---C-cch---------h------hhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHH
Q 013096          240 PKM---A-FDD---------Y------RTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGL  297 (449)
Q Consensus       240 ~~~---~-~~~---------~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~  297 (449)
                      +++   + +++         .      .+.++++++++++++...+...+.+...+. ...|.|.++++  + +..+.|+
T Consensus       223 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~g~  301 (465)
T TIGR00894       223 PSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTI-LPTYLPTFISWVLRVSGKENGL  301 (465)
T ss_pred             cccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcChHHhHH
Confidence            321   1 000         0      012477888999888777665555554443 35689988764  2 3445677


Q ss_pred             HHHHHHHHHHHhhhHHHHHhcCCC--CCCchhH---HHHHHH--HHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhH
Q 013096          298 IFPSLLGARMLGSTVFPWLISGPS--SFRTEDC---LLYAFV--VLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       298 i~~~~~~~~~lg~~l~~~l~~~~~--~~~~~~~---l~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                      ..+...++.+++..+.+++.||..  +...++.   +.....  +.++.+........+....+..+++.+++.+...+.
T Consensus       302 ~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  381 (465)
T TIGR00894       302 LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAG  381 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhh
Confidence            766667777888888888888321  1111111   111111  111111111221122222333344444445545555


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHH-HhHHh
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAILLFLL-LRGFY  409 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~-~g~~~  409 (449)
                      ......+..|+ .+|++.++.+...+++....+. .|.+.
T Consensus       382 ~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~  420 (465)
T TIGR00894       382 VLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNIL  420 (465)
T ss_pred             hhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence            55555666664 7899999988888876544443 34443

>TIGR00896 CynX cyanate transporter

Probab=99.93  E-value=1.1e-22  Score=200.78  Aligned_cols=325  Identities=8%  Similarity=-0.014  Sum_probs=209.0

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICL  151 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~~~~s~~~l~~~R~l~  151 (449)
                      ..+|++|.+.+++|.|+++.+++.+...++..+++++.|+++||+||||+++.+.+...++.+...+++.+.+++.|+++
T Consensus        18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   97 (355)
T TIGR00896        18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALI   97 (355)
T ss_pred             cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            35788889999999999999999999999999999999999999999999999888877766533678999999999999


Q ss_pred             HhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHH
Q 013096          152 SLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIIC  231 (449)
Q Consensus       152 Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~  231 (449)
                      |++.+...+...+ .+.|.    ++ ++.++..+.......++..+++.+++.+.+.. +.+||..|.......++....
T Consensus        98 g~g~~~~~~~~~~-~~~~~----~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-~~~w~~~f~~~~~~~~~~~~~  170 (355)
T TIGR00896        98 GVGIAIINVLLPS-LIKRD----FP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS-GGHWQQALAWWALPALLALLA  170 (355)
T ss_pred             HHHHHHHhccchH-HHHHh----Cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence            9999876554433 22222    22 24566677666666666777777777776543 234888887654433332221


Q ss_pred             HHhccccCCCC--CcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHH
Q 013096          232 VSRGWTENPKM--AFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARM  307 (449)
Q Consensus       232 i~~~~~e~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~  307 (449)
                         ..||.+++  ++++..+...++++|||+.+...+...+.... +.....|.|.+.++ + +....+...+...++.+
T Consensus       171 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i  246 (355)
T TIGR00896       171 ---WIPQVRRRVAANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGL-YYSLIGWLPAILISHGASAATAGSLLALMQLAQA  246 (355)
T ss_pred             ---HhhhhccccCCCCCCCCCCCchhhcCHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence               12332221  11111112356678888877655443333333 22334578887764 2 34456777788888999


Q ss_pred             HhhhHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCC-Ccchh
Q 013096          308 LGSTVFPWLISGPSSFRT-EDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVP-NELRG  385 (449)
Q Consensus       308 lg~~l~~~l~~~~~~~~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p-~~~rg  385 (449)
                      ++..+.+++.|   |++. ++.+..+..+.+++.....+..++. ... ...+++++.|..+|...+...+..+ +++++
T Consensus       247 ~~~~~~g~l~d---r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g  321 (355)
T TIGR00896       247 ASALLIPALAR---RVKDQRGIVAVLAVLQLVGLCGLLFAPMHG-LWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAA  321 (355)
T ss_pred             HHHHhHHHHHh---hhccchHHHHHHHHHHHHHHHHHHHhhhhH-HHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHH
Confidence            99999999999   6643 4444444434433333333322221 111 3345678888888887666655444 45678


Q ss_pred             HHHHhhHHHHHHHHHHHHH-HhHHhhhc
Q 013096          386 GMISLSLAPANAAILLFLL-LRGFYRNI  412 (449)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~  412 (449)
                      +..++.+...+++...++. .|.+.+..
T Consensus       322 ~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       322 ALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888877666655433443 34444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.93  E-value=1.4e-22  Score=198.15  Aligned_cols=321  Identities=17%  Similarity=0.140  Sum_probs=228.9

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchh
Q 013096           64 SLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHP  142 (449)
Q Consensus        64 ~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~  142 (449)
                      +.....+....+..+.+.+++|.++.+.+.+.+...++..+++++.|+++||+||||.+..+..+..++.+ +...++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~   88 (352)
T cd06174           9 FLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLW   88 (352)
T ss_pred             HHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHH
Confidence            34445555667778788889999999999999999999999999999999999999999999988888776 66778999


Q ss_pred             HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHH
Q 013096          143 SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASV  222 (449)
Q Consensus       143 ~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~  222 (449)
                      .+++.|+++|++.+...+..++ ++.|..    ++|+.++.++.......++..++|.+++.+.+..   +|+..|.+..
T Consensus        89 ~~~~~~~l~g~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~  160 (352)
T cd06174          89 LLLVGRFLLGLGGGALYPAAAA-LIAEWF----PPKERGRALGLFSAGFGLGALLGPLLGGLLAESL---GWRWLFLILA  160 (352)
T ss_pred             HHHHHHHHHHcccccccHhHHH-HHHHhC----CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHH
Confidence            9999999999999887777655 344442    3344566677766677777888888888887765   7888988876


Q ss_pred             HHHHHHHHHHHhccccCCCCCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHH
Q 013096          223 FLSILGIICVSRGWTENPKMAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIF  299 (449)
Q Consensus       223 ~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~  299 (449)
                      ...++..+...+ .+                     |+++...+...+.......+ ..+.|.+.++  + ++.+.+...
T Consensus       161 ~~~~~~~~~~~~-~~---------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  217 (352)
T cd06174         161 ILGLLLALLLLF-LL---------------------RLLLLLALAFFLLSFGYYGL-LTYLPLYLQEVLGLSAAEAGLLL  217 (352)
T ss_pred             HHHHHHHHHHHH-HH---------------------HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHH
Confidence            665555443322 11                     33444433333333332222 3356666554  2 445577777


Q ss_pred             HHHHHHHHHhhhHHHHHhcCCCCCCchh-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhcc
Q 013096          300 PSLLGARMLGSTVFPWLISGPSSFRTED-CLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMY  378 (449)
Q Consensus       300 ~~~~~~~~lg~~l~~~l~~~~~~~~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~  378 (449)
                      ....++..++..+.+++.|   |+++++ .+..+..+..++.......+ +.+......++.+++.+...+...++.+|.
T Consensus       218 ~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  293 (352)
T cd06174         218 SLFGLGGILGALLGGLLSD---RLGRRRLLLLIGLLLAALGLLLLALAP-SLALLLVALLLLGFGLGFAFPALLTLASEL  293 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhccchhHHHHHHhh
Confidence            8888888999999999999   677777 66666555555444443333 233445556677888888889999999999


Q ss_pred             CCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHH
Q 013096          379 VPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVA  419 (449)
Q Consensus       379 ~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~  419 (449)
                      .|+|+|++.+|+.+...+.+...++.. +...++.+....+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~  335 (352)
T cd06174         294 APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFL  335 (352)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH
Confidence            999999999999988888775555444 44445555444333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.93  E-value=5.2e-23  Score=203.40  Aligned_cols=321  Identities=13%  Similarity=0.037  Sum_probs=193.7

Q ss_pred             HHHHHhhhhhHHHHH-HHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhc-ch
Q 013096           65 LASVMEGLWSVFGEY-ELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSIT-AH  141 (449)
Q Consensus        65 l~~~~~~~~~~~~~~-l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~-s~  141 (449)
                      +.........|+.|. +.+++|+|+.+++++.+...++..+++++.|+++||+||||+++++.++..++.+ +.+++ ++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~   91 (366)
T TIGR00886        12 LSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY   91 (366)
T ss_pred             HHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            333333456788775 6689999999999999999999999999999999999999999999999888776 77788 99


Q ss_pred             hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc----cc---ccCCc
Q 013096          142 PSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG----ID---VKKGV  214 (449)
Q Consensus       142 ~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~----~~---~~~g~  214 (449)
                      +.+++.|+++|++.+.. +...+ ++.|.    .++++.++..+.......++..+++.+++.+..    ..   ...+|
T Consensus        92 ~~~~~~~~~~g~~~~~~-~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w  165 (366)
T TIGR00886        92 SVLLLLRLFIGIAGGSF-ASCMP-WISFF----FPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW  165 (366)
T ss_pred             HHHHHHHHHHHHhchhh-HhHHH-HHHHh----cCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            99999999999986643 33332 34443    333444555555443333333333333333222    10   01378


Q ss_pred             chhHHH-HHHHHHHHHHHHHhccccCCCCC--cchhh-h-----------hhhHhhhcChhHHHHHHHHHHHHHHHHHHH
Q 013096          215 VPSSTA-SVFLSILGIICVSRGWTENPKMA--FDDYR-T-----------SFFTYIFGDKRIWLLVLAQACLQFSIALFW  279 (449)
Q Consensus       215 ~~~f~~-~~~~~~~~~~~i~~~~~e~~~~~--~~~~~-~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  279 (449)
                      |+.|++ ......+..++.....+|+++++  +++.+ +           +..++.+++|+++...+...+.....+. .
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  244 (366)
T TIGR00886       166 GWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLG-V  244 (366)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHH-H
Confidence            888843 22222222222222334433211  11000 0           1456678888877655544333332222 3


Q ss_pred             HHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHh--cccc-hhHHH
Q 013096          280 ILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIA--YDYQ-EIGIL  353 (449)
Q Consensus       280 ~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~--~~~~-~~~~~  353 (449)
                      ..|.|.+.++  + ++.+.+.......+..+++..+.+++.|   |+++++.+.........+.....  ...+ +....
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~---r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (366)
T TIGR00886       245 SSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISD---RLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVF  321 (366)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHH---hhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence            4567777654  2 3445676666677778889999999999   67776655544333333222222  2211 23233


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHH
Q 013096          354 VALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPAN  396 (449)
Q Consensus       354 ~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~  396 (449)
                      +....+..+..|+..+...+...+..| +++|+++|+.+...+
T Consensus       322 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~  363 (366)
T TIGR00886       322 IVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGN  363 (366)
T ss_pred             HHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhcc
Confidence            333344455566666666677777777 679999988766544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.9e-23  Score=200.15  Aligned_cols=359  Identities=12%  Similarity=0.037  Sum_probs=232.7

Q ss_pred             CCcchhhhHHHHHHHHHHHHHhhhh----hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHH
Q 013096           49 SSSFVPFQRNFLLLFSLASVMEGLW----SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLI  124 (449)
Q Consensus        49 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~  124 (449)
                      ++..+++|.+.+...+++.++..+.    +...|++.+|.++|.+|+|.+.+..++++.++-.+.|.++||.+.|+.+-.
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~   99 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence            4567788888877777777776543    334578888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHH-
Q 013096          125 FFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLA-  202 (449)
Q Consensus       125 ~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg-  202 (449)
                      ++++.++.++ ..++++++.+.+.-+++|...|.-+|..... ++..    +++++.++..+.++..-.++..+.|++. 
T Consensus       100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~-i~~W----fsr~eRG~~~siWn~shNiGGal~~~~~~  174 (448)
T COG2271         100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCART-ITHW----FSRKERGTWWSIWNTSHNIGGALAPLVAL  174 (448)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHH----cCccccCceEEEehhhhhcccchHHHHHH
Confidence            9999998887 7888999999999999999888777765432 2222    2333344444554444344333444444 


Q ss_pred             -HHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCC---C---c------c--h--hhh-------hhhHhhhcC
Q 013096          203 -NWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKM---A---F------D--D--YRT-------SFFTYIFGD  258 (449)
Q Consensus       203 -~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~---~---~------~--~--~~~-------~~~~~l~~~  258 (449)
                       +++..++   +||..|++..++.++..++.++..+++|++   +   +      +  +  ++.       .-++.+++|
T Consensus       175 la~~~~~~---~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~N  251 (448)
T COG2271         175 LAFFAFHG---GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKN  251 (448)
T ss_pred             HHHHHhcc---chhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcC
Confidence             5555544   899999987666555444455555555432   0   0      0  0  111       125678999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchh-HHHHHH-
Q 013096          259 KRIWLLVLAQACLQFSIALFWILWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTED-CLLYAF-  333 (449)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~-~l~~~~-  333 (449)
                      |.+|.+++...+.+..=+. +..|.|.++.+.   +....+..++.+-.+.+.|++++|+++||  -++.+| ...+.+ 
T Consensus       252 k~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDk--lfkgrR~p~~~i~~  328 (448)
T COG2271         252 KLIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDK--LFKGRRGPMALIFM  328 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH--hcccccchHHHHHH
Confidence            9999988877666544333 467999998753   33456677777888999999999999995  343333 322222 


Q ss_pred             HHHHHHHHHHhcccch-hHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHH-HH-HHHHHHhHHhh
Q 013096          334 VVLGFVFSIIAYDYQE-IGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANA-AI-LLFLLLRGFYR  410 (449)
Q Consensus       334 ~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~-~~-~~~~~~g~~~~  410 (449)
                      +...+++......++. ..+....+.+.++..-...-.......|..|++.-|++.|+.....++ +. ......|...|
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence            2222222222222222 233333333344433222233445567999999999999998888887 32 22222344445


Q ss_pred             hcchhHHH
Q 013096          411 NIENAAMV  418 (449)
Q Consensus       411 ~~~~~~~~  418 (449)
                      +.+....+
T Consensus       409 ~~gW~g~F  416 (448)
T COG2271         409 TWGWDGGF  416 (448)
T ss_pred             cCCCcchH
Confidence            54544333

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.93  E-value=1.9e-23  Score=206.70  Aligned_cols=332  Identities=12%  Similarity=0.031  Sum_probs=205.8

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHH
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANI  149 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~  149 (449)
                      ...++..|.+.+++|.|+.+++++.+...++..+++++.|+++||+|||++++.+.++..++.+ +..+++++.+++.|+
T Consensus        12 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (379)
T TIGR00881        12 KNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWA   91 (379)
T ss_pred             HhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3445566777789999999999999999999999999999999999999999999988888776 778899999999999


Q ss_pred             HHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHH-HHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          150 CLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQ-VLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       150 l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~-~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      ++|++.+...+...+ ++.|.    .++++.++.++.......++.+++| .++..+.+.   .+||+.|.+...+.++.
T Consensus        92 ~~g~~~~~~~~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  163 (379)
T TIGR00881        92 LNGIFQGMGWPPCGR-TVTKW----FSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL---YSWHWVFIVPGIIAIIV  163 (379)
T ss_pred             HHHhhccccCCchHH-HHHHh----cCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc---CCchhHHHHHHHHHHHH
Confidence            999999877776554 33443    2333444455555555556666666 455555544   38898988765544443


Q ss_pred             HHHHHhccccCCCC------C----cc------------hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013096          229 IICVSRGWTENPKM------A----FD------------DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTL  286 (449)
Q Consensus       229 ~~~i~~~~~e~~~~------~----~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  286 (449)
                      .+......+|++++      +    ++            +..+...++++++|.++...+...+....... ...|.|.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  242 (379)
T TIGR00881       164 SLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTG-ILDWSPLY  242 (379)
T ss_pred             HHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            33333333443211      0    00            00112345677888877665544444333232 34467777


Q ss_pred             ccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhH-HHHHH-HHHHHHHHHHhcc-cchhHHHHHHHHHH
Q 013096          287 VAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDC-LLYAF-VVLGFVFSIIAYD-YQEIGILVALFCLF  360 (449)
Q Consensus       287 ~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~-l~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~~l~  360 (449)
                      ..+  + ++.+.+.......++.++|..+.+++.||.  .++++. +.... ....+++...... ..+...........
T Consensus       243 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
T TIGR00881       243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKL--FNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFAL  320 (379)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHH--cCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            653  2 344567777777788889999999999831  222222 21111 1111112211111 11222222222333


Q ss_pred             HHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHH-HhHHhhhcc
Q 013096          361 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLL-LRGFYRNIE  413 (449)
Q Consensus       361 ~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~-~g~~~~~~~  413 (449)
                      +...+...+......+|..|++.||++.|+.+...+++...++. .|.+.+..+
T Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence            33333334455667789999999999999988877776544443 344445444

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.93  E-value=1.7e-21  Score=200.34  Aligned_cols=358  Identities=13%  Similarity=0.072  Sum_probs=221.8

Q ss_pred             HHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-----CchHH-HHHHHHHHHHHHH-HHHh
Q 013096           66 ASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI-----GQKKV-CLIFFILHLFVGV-WKSI  138 (449)
Q Consensus        66 ~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-----GRr~~-ll~~~~~~~~~~l-~~~~  138 (449)
                      ......+..+.++...++.|.|.++++.....+. .. ++.+++|+++||+     ||||. ++.+.+..+++.. +++.
T Consensus        24 ~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~-~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~  101 (491)
T PRK11010         24 SGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQ-AY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL  101 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            4444556677778888899999999997633332 22 5789999999999     99997 4455555555543 4443


Q ss_pred             ---cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcc
Q 013096          139 ---TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVV  215 (449)
Q Consensus       139 ---~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~  215 (449)
                         ++++.+.+.|+++|++.+...+..++ +..|.    .++++.++..+....+..++.++++.++.++.+..  +|||
T Consensus       102 ~~~~~l~~l~~~~~l~~~~~a~~~i~~~a-~~~~~----~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~--~GWr  174 (491)
T PRK11010        102 EPGTQLRWLAALAVVIAFCSASQDIVFDA-WKTDV----LPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY--LGWQ  174 (491)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCHH
Confidence               47889999999999988876666554 33333    34455677777777777778888888888887632  4899


Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCC-Cc-ch---hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-
Q 013096          216 PSSTASVFLSILGIICVSRGWTENPKM-AF-DD---YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-  289 (449)
Q Consensus       216 ~~f~~~~~~~~~~~~~i~~~~~e~~~~-~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  289 (449)
                      .+|++.+...++..+... ..||++++ ++ ++   ...+++++++++++.+.......+.... ..+...|.|.++.+ 
T Consensus       175 ~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~-~~~~~~~~~~~l~~~  252 (491)
T PRK11010        175 GMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLG-DAFAMSLTTTFLIRG  252 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence            999987665555543333 35665422 11 11   1123567778777666544333333222 22223455555432 


Q ss_pred             -C-CccchHHHHH-HHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHH---HHHHhcccchhHHHHHHHHHHHHH
Q 013096          290 -G-REVHLGLIFP-SLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFV---FSIIAYDYQEIGILVALFCLFHAC  363 (449)
Q Consensus       290 -~-~~~~~g~i~~-~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~~  363 (449)
                       + +..+.|.... ...++.++|..+.+++.|   |++++|.+.....+.++.   ........++........++..++
T Consensus       253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~d---r~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~  329 (491)
T PRK11010        253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQ---RLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLC  329 (491)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence             3 4455677664 334688899999999999   777777655433322221   111122222222223333444455


Q ss_pred             hhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH-HHHHHHhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 013096          364 VGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI-LLFLLLRGFYRNIENAAMVAFAALGLFIAAGCMHVLKR  437 (449)
Q Consensus       364 ~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  437 (449)
                      .|+..++..++.++..|++.+++.+++.+...+++. ..+++.|.+.+..|++..+.+.++..+.+.......|+
T Consensus       330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666667778888899999999999998887777663 34455566667677766555544444444444444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.93  E-value=2.9e-21  Score=193.91  Aligned_cols=348  Identities=12%  Similarity=0.016  Sum_probs=205.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-----CchH-HHHHHHHHHHHH
Q 013096           59 FLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI-----GQKK-VCLIFFILHLFV  132 (449)
Q Consensus        59 ~~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-----GRr~-~ll~~~~~~~~~  132 (449)
                      ++.+|+.-....++..+.+|..+++.|+|.+|+|++......  .+.++++|+++||+     |||| .++.+.+..+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            344555555566677778888889999999999988666654  57799999999999     8876 577777776655


Q ss_pred             HH-HHHh---cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 013096          133 GV-WKSI---TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGI  208 (449)
Q Consensus       133 ~l-~~~~---~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~  208 (449)
                      .. +.+.   ++++.+++..++.+...+...++.++ ++.|.    .++++.++..+....+..++.++++.++.++.+.
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a-l~~~~----~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~  156 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDA-YSTDV----LHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR  156 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----cChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            44 4444   35788888888888777776666665 44444    2344456666666666677777888888877764


Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhccccCCCCC--cch---hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhh
Q 013096          209 DVKKGVVPSSTASVFLSILGIICVSRGWTENPKMA--FDD---YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWA  283 (449)
Q Consensus       209 ~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (449)
                      .  +|||.+|++.+...++..+. ....||+++++  +++   ..++++++++|||.++.+.+...+.............
T Consensus       157 ~--~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~  233 (402)
T PRK11902        157 V--LGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLST  233 (402)
T ss_pred             c--cCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHH
Confidence            2  48999999866554444332 33456654321  111   2234678899999887655544443332221111223


Q ss_pred             hhhccC-C-CccchHHHHHHHH-HHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHH---HHHHhcccchhHHHHHHH
Q 013096          284 PTLVAD-G-REVHLGLIFPSLL-GARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFV---FSIIAYDYQEIGILVALF  357 (449)
Q Consensus       284 p~~~~~-~-~~~~~g~i~~~~~-~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~---l~~~~~~~~~~~~~~~~~  357 (449)
                      |.+.++ + ++...|.+....+ .+.++|..+.+++.|   |+++++.+.....+..+.   +......+++.+......
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~---r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  310 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMV---RLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI  310 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            433322 3 3445677665443 457889999999999   787777655443332222   112223222333333332


Q ss_pred             HH----HHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH-HHHHHHhHHhhhcchhHHHHHHHH
Q 013096          358 CL----FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI-LLFLLLRGFYRNIENAAMVAFAAL  423 (449)
Q Consensus       358 ~l----~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~  423 (449)
                      .+    .++..+...+..+.+.++..|.++++...+    ..+++. ..+++.|.+.+..|.+..+..+++
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~  377 (402)
T PRK11902        311 GIENLCGGMGTAAFVALLMALCNRSFSATQYALLSA----LASVGRVYVGPTSGYLVEAYGWPGFYLMTVV  377 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            22    233344445566666666666555543222    222221 223333555677776655544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.93  E-value=3.1e-22  Score=204.06  Aligned_cols=354  Identities=11%  Similarity=-0.008  Sum_probs=220.2

Q ss_pred             hhHHHHHHHHHHHHHhhh----hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHH
Q 013096           55 FQRNFLLLFSLASVMEGL----WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHL  130 (449)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~  130 (449)
                      +++..+...++.....+.    .+++.+++.+++|.|+++.+++.+..++...+++++.|+++||+|||++++.+.++..
T Consensus        16 ~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   95 (455)
T TIGR00892        16 WGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS   95 (455)
T ss_pred             cchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence            344444444444433222    2455677788999999999999988888888999999999999999999999988888


Q ss_pred             HHHH-HHHhcchhHHHH-HHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 013096          131 FVGV-WKSITAHPSVWV-ANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGI  208 (449)
Q Consensus       131 ~~~l-~~~~~s~~~l~~-~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~  208 (449)
                      ++++ ++++++++.+++ .|+++|++.+...+...+ ++.+..    + ++.+++.+....+..++..++|.+++++.+.
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~-~~~~~~----~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~  169 (455)
T TIGR00892        96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLT-MLGKYF----Y-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES  169 (455)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHH-HHHHHH----H-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            8776 778889998865 579999998865443322 333332    2 2345677776667677777888888888775


Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhccc--cCC---CCC--c--------ch----hhh---hhh--HhhhcChhHHHH
Q 013096          209 DVKKGVVPSSTASVFLSILGIICVSRGWT--ENP---KMA--F--------DD----YRT---SFF--TYIFGDKRIWLL  264 (449)
Q Consensus       209 ~~~~g~~~~f~~~~~~~~~~~~~i~~~~~--e~~---~~~--~--------~~----~~~---~~~--~~l~~~~~~~~~  264 (449)
                      +   |||+.|.+..++.+++.+...+..+  +++   +++  +        ++    ...   ..+  .+++++|+++.+
T Consensus       170 ~---gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (455)
T TIGR00892       170 F---GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVY  246 (455)
T ss_pred             h---ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHH
Confidence            5   8999999866554433322222111  110   000  0        00    000   011  146778887765


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHH--HHHHHHHHH
Q 013096          265 VLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLY--AFVVLGFVF  340 (449)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~--~~~~~~~~l  340 (449)
                      .....+.....+. ...|.|.+.++ + +..+.+...+...++.+++..+.+++.||. +.++++....  +....++.+
T Consensus       247 ~~~~~l~~~~~~~-~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~l~~  324 (455)
T TIGR00892       247 LSGNVIMFLGFFA-PIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK-WIRPHVQYLFSFALLFNGLTH  324 (455)
T ss_pred             HHHHHHHHHHccc-hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHHHH
Confidence            5544433333222 23456666544 2 344567777777788888888899999841 2333332222  222223332


Q ss_pred             HHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcc-hhHHH
Q 013096          341 SIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIE-NAAMV  418 (449)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~  418 (449)
                      ....... +.+..+...++.+++.+...+...+...+.+|++++|+.+|+.+...+++...++.. |.+.+..+ +...+
T Consensus       325 ll~~~~~-~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f  403 (455)
T TIGR00892       325 LLCALAG-DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIF  403 (455)
T ss_pred             HHHHHhc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHH
Confidence            2222222 333334445566777788888888888999999999999999988888875555554 43444443 44433


Q ss_pred             HH
Q 013096          419 AF  420 (449)
Q Consensus       419 ~~  420 (449)
                      .+
T Consensus       404 ~~  405 (455)
T TIGR00892       404 YA  405 (455)
T ss_pred             HH
Confidence            33

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.92  E-value=2.5e-22  Score=226.94  Aligned_cols=334  Identities=14%  Similarity=0.080  Sum_probs=217.3

Q ss_pred             HHHHHHHHHHHhhhhhHHHH-----HHHHHhCCCh-HHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHH---HHHHH
Q 013096           59 FLLLFSLASVMEGLWSVFGE-----YELVYYGVAK-EQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLI---FFILH  129 (449)
Q Consensus        59 ~~~~~~l~~~~~~~~~~~~~-----~l~~~~g~s~-~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~---~~~~~  129 (449)
                      ++...+++.++|++....+.     .+..+.+.+. ..+++..+++++++.++++++|+++||+|||+++..   ..+..
T Consensus        16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~   95 (1140)
T PRK06814         16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGI   95 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHH
Confidence            34556677787776432211     1112333332 346677788889999999999999999999998643   22222


Q ss_pred             HHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 013096          130 LFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGI  208 (449)
Q Consensus       130 ~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~  208 (449)
                      .+..+ +...+|++++++.|+++|++.+...|+..+ ++.+.    .++++++++++..+.+..++.++||.+++++...
T Consensus        96 ~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a-~l~~~----~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814         96 AALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS-ILPDH----LNKDELLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH-hhHhh----cCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22222 444589999999999999999988887665 33443    3455677788888888888899999999999886


Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHhccccCCCCCc--c---h---hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 013096          209 DVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAF--D---D---YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWI  280 (449)
Q Consensus       209 ~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~--~---~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      .   +|++.|.......+++++ +...++++++++.  +   +   ...+.++.+.++|.++...+...++...... ..
T Consensus       171 ~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  245 (1140)
T PRK06814        171 G---NFVILVALLMGIAVLGWL-ASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAV-VL  245 (1140)
T ss_pred             c---ccHHHHHHHHHHHHHHHH-HHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-HH
Confidence            5   888887544444444333 3334555432211  1   1   1124578888998888766655554443333 34


Q ss_pred             HhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcc-----------
Q 013096          281 LWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD-----------  346 (449)
Q Consensus       281 ~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~-----------  346 (449)
                      .|.|.+..+.   +....|++++...+++++|+.+.+++.+   +...++.+..+.++.+++.....+.           
T Consensus       246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  322 (1140)
T PRK06814        246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSE---GRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQL  322 (1140)
T ss_pred             HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC---CceeeeeehHHHHHHHHHHHHHHhcccccccccccc
Confidence            4778887642   4456888888889999999999999987   3333343333222222222111110           


Q ss_pred             --------cchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH
Q 013096          347 --------YQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL  405 (449)
Q Consensus       347 --------~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~  405 (449)
                              .++.+...+..++++++.++..+...++.++.+|++.||+++|..++..+++...+.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~  389 (1140)
T PRK06814        323 KSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTII  389 (1140)
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHH
Confidence                    12333344555566778888888889999999999999999999988777765444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=3.4e-22  Score=201.81  Aligned_cols=341  Identities=14%  Similarity=0.075  Sum_probs=193.8

Q ss_pred             HHHHHHHhhhhhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-H-H--H
Q 013096           63 FSLASVMEGLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-W-K--S  137 (449)
Q Consensus        63 ~~l~~~~~~~~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~-~--~  137 (449)
                      +++..+......|+.+...+ ++|+|+.++|.+.+...++..+++++.|+++||+||||+++++..+..+... . .  .
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~   98 (420)
T PRK09528         19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF   98 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334434456677765555 5999999999999999999999999999999999999999876655443321 1 1  1


Q ss_pred             hc-----chhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 013096          138 IT-----AHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKK  212 (449)
Q Consensus       138 ~~-----s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~  212 (449)
                      ++     .+...++.++..|.+.....+..++|. ++. .|+     .+..++.......++..++|.+++++.+    .
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~  167 (420)
T PRK09528         99 APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRR-----SGFEYGRARMWGSLGWALCAFIAGILFN----I  167 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-Hhh-----ccccchhhHHhhhHHHHHHHHHHHHHHh----c
Confidence            11     111122333444433333333334432 211 111     1223344344445566778888887764    2


Q ss_pred             CcchhHHHHHHHHHHHHHHHHhccccCCCCC-----c-ch---hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhh
Q 013096          213 GVVPSSTASVFLSILGIICVSRGWTENPKMA-----F-DD---YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWA  283 (449)
Q Consensus       213 g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~-----~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (449)
                      +|+.+|++.....+++.+......+|.++++     + ++   ...+..++++|||+++.+.+...+... .+.....+.
T Consensus       168 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~-~~~~~~~~~  246 (420)
T PRK09528        168 NPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVAC-FYDVFDQQF  246 (420)
T ss_pred             CchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHH-HHHHHHHHH
Confidence            7788998876655554444433333322211     0 00   111235567888877654433222221 122222234


Q ss_pred             hhhccC-----C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 013096          284 PTLVAD-----G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALF  357 (449)
Q Consensus       284 p~~~~~-----~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~  357 (449)
                      |.+..+     + +....|.+.+...++..++....+++.|   |+++++.+..+..+.++......+.. +.+..+...
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~g~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~~~  322 (420)
T PRK09528        247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIIN---RIGAKNALLLAGTIMAVRIIGSGFAT-GPLEVSILK  322 (420)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCcchhhHHHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence            444321     1 2234677777777778899999999999   78888877666555555444444433 333333333


Q ss_pred             HHHHHHhhhhhhHHHHHHhccCCCcchhHHHHh-hHHHHHHHHHHH-HHHhHHhhhcchhHHHH
Q 013096          358 CLFHACVGLILPSLARLRTMYVPNELRGGMISL-SLAPANAAILLF-LLLRGFYRNIENAAMVA  419 (449)
Q Consensus       358 ~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~  419 (449)
                      .+.+.+.+...+....+.++..|++.|++..+. .++..+++...+ ++.|.+.+..|+...+.
T Consensus       323 ~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~  386 (420)
T PRK09528        323 LLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL  386 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence            444555555556666778888999999887655 444455554333 33455556666544444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.92  E-value=8.4e-22  Score=198.65  Aligned_cols=355  Identities=14%  Similarity=0.084  Sum_probs=214.8

Q ss_pred             HHHHHhhhhhHHHH-HHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCc-hHHHHHHHHHHHHHHH-HHHhcch
Q 013096           65 LASVMEGLWSVFGE-YELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQ-KKVCLIFFILHLFVGV-WKSITAH  141 (449)
Q Consensus        65 l~~~~~~~~~~~~~-~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GR-r~~ll~~~~~~~~~~l-~~~~~s~  141 (449)
                      +.....++..|+++ .+.+++|+|.+|+|++.+...++..+++++.|.++||+|| |+++.++.++.++.+. +.+.+|+
T Consensus        13 ~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~   92 (418)
T TIGR00889        13 LQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTP   92 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            33333445545444 4446799999999999999999999999999999999965 7777777777666554 6677899


Q ss_pred             hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhh------cCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcc
Q 013096          142 PSVWVANICLSLASSIFSFNFETWVAIEHEKQ------GQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVV  215 (449)
Q Consensus       142 ~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r------~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~  215 (449)
                      +.+++.|++.|++.+...+..+++..+...++      ++++   .+.++      .++.+++|.+++.+...   ..| 
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~---~r~~G------~lG~~ig~~l~g~l~~~---~~~-  159 (418)
T TIGR00889        93 AGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPP---IRVMG------TIGFIAAMWAVSLLDIE---LSN-  159 (418)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCC---eeeeh------hHHHHHHHHHHHHhccc---chh-
Confidence            99999999999988777777666533222212      1222   23333      23455677777766321   134 


Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCCC-cc--hhh---hhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 013096          216 PSSTASVFLSILGIICVSRGWTENPKMA-FD--DYR---TSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD  289 (449)
Q Consensus       216 ~~f~~~~~~~~~~~~~i~~~~~e~~~~~-~~--~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  289 (449)
                      .+|++..+..++..+.. ...||.++++ ++  +..   +..++.++|||+++.+.+...+...... ....+.|.+.++
T Consensus       160 ~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  237 (418)
T TIGR00889       160 IQLYITAGSSALLGVFA-LTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQ-ITNIFGNGFLHE  237 (418)
T ss_pred             HHHHHHHHHHHHHHHHH-hcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHH-HHHHhHHHHHHH
Confidence            35666555444444333 3456654221 11  111   1134568889887665554444332221 112233444432


Q ss_pred             -C-Cc--------cchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccc-h--hHHHHHH
Q 013096          290 -G-RE--------VHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQ-E--IGILVAL  356 (449)
Q Consensus       290 -~-~~--------~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~--~~~~~~~  356 (449)
                       + ++        ...+...+...++.+++....+++.|   |+++++.+..+.++.++.......... .  .+..+..
T Consensus       238 ~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~d---r~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~  314 (418)
T TIGR00889       238 FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLK---RFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLS  314 (418)
T ss_pred             hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence             2 11        23467777777788888899999999   788888877776665554433333211 1  1223344


Q ss_pred             HHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhH-HHHHHHHHHHHHH-hHHhhhc------chhHHHH-HHHHHHHH
Q 013096          357 FCLFHACVGLILPSLARLRTMYVPNELRGGMISLSL-APANAAILLFLLL-RGFYRNI------ENAAMVA-FAALGLFI  427 (449)
Q Consensus       357 ~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~-~~~~~~~~~~~~~-g~~~~~~------~~~~~~~-~~~~~~l~  427 (449)
                      .++.+++.+...+....+..|.+|++.||++.|+.+ ...+++...++.. |.+.+..      ++...+. .+++.++.
T Consensus       315 ~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~  394 (418)
T TIGR00889       315 MIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAIL  394 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence            556667777777888888899999999999999987 4445555445544 4444443      2344333 33344444


Q ss_pred             HHHHHHHHHH
Q 013096          428 AAGCMHVLKR  437 (449)
Q Consensus       428 ~~~~~~~~~~  437 (449)
                      +...+...++
T Consensus       395 ~~l~~~~~~~  404 (418)
T TIGR00889       395 AVLFMIFFKY  404 (418)
T ss_pred             HHHHHHHhCC
Confidence            4334444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.92  E-value=2.6e-21  Score=194.50  Aligned_cols=335  Identities=10%  Similarity=0.005  Sum_probs=209.5

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH---Hh
Q 013096           63 FSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK---SI  138 (449)
Q Consensus        63 ~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~---~~  138 (449)
                      +++-.+.+++.+|+.|.+.+++|.|+.|.|++.+..+++..+++++.|++.||+||||+++.+.++++++++ ..   ..
T Consensus        12 f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~   91 (410)
T TIGR00885        12 FALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI   91 (410)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344445567788999999899999999999999999999999999999999999999999999999888765 22   24


Q ss_pred             cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc---------
Q 013096          139 TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID---------  209 (449)
Q Consensus       139 ~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~---------  209 (449)
                      +|++.+++.|++.|+|.|...+..+.+ +.+..    ++++.++..+..+..+.++..++|.++..+....         
T Consensus        92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~  166 (410)
T TIGR00885        92 MNYTLFLVGLFILTAGLGFLETAANPY-ILVMG----PESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL  166 (410)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHhhhhHH-HHHHC----CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence            689999999999999999887766553 33332    2222334455555555666666777666553210         


Q ss_pred             --------------ccCCcchhHHHHHHHHHHHHHHH-HhccccCCCCC-cchhhhhhhHhhhcChhHHHHHHHHHHHHH
Q 013096          210 --------------VKKGVVPSSTASVFLSILGIICV-SRGWTENPKMA-FDDYRTSFFTYIFGDKRIWLLVLAQACLQF  273 (449)
Q Consensus       210 --------------~~~g~~~~f~~~~~~~~~~~~~i-~~~~~e~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  273 (449)
                                    ...+||.+|.+.+.+.++..++. ....||.++++ +++..++.+++++|+|+++...+..++..+
T Consensus       167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg  246 (410)
T TIGR00885       167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFYVG  246 (410)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHHHHhChhHHHHHHHHHHHHH
Confidence                          01268999987555444333222 22344422221 111122345678888888765554444332


Q ss_pred             HHHHHHHHhhhhhccC-CCcc--c-hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccch
Q 013096          274 SIALFWILWAPTLVAD-GREV--H-LGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQE  349 (449)
Q Consensus       274 ~~~~~~~~~~p~~~~~-~~~~--~-~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~  349 (449)
                      . ......+.|.+..+ +.+.  . .+...+....+.++|..+.+++.|   |++++|.+.....+..++..+.....+.
T Consensus       247 ~-e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~---r~~~~~~l~i~~~~~~~~~ll~~~~~~~  322 (410)
T TIGR00885       247 V-QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLIS---YLAAHKVLMAYAIIGMALCLGSIFAGGH  322 (410)
T ss_pred             H-HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence            2 22223445666543 1111  1 222334445667889999999999   7888887665544444333333332221


Q ss_pred             hHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHH-HHHHHHHhHHhh
Q 013096          350 IGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAA-ILLFLLLRGFYR  410 (449)
Q Consensus       350 ~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~-~~~~~~~g~~~~  410 (449)
                        .....+.+.+++.+..+|...++..+..+++.+....++... . ++ .+.+++.|...|
T Consensus       323 --~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~-~-~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       323 --VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA-I-IGGGIVPPLQGFIID  380 (410)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-H-hccchHHHHHHHHHH
Confidence              224455566777777889999999999887754333333221 1 32 334455566666

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=6.7e-22  Score=223.71  Aligned_cols=334  Identities=16%  Similarity=0.180  Sum_probs=214.2

Q ss_pred             HHHHHHHhhh-hhHHHHHHHHHhCCCh--HHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH----H
Q 013096           63 FSLASVMEGL-WSVFGEYELVYYGVAK--EQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV----W  135 (449)
Q Consensus        63 ~~l~~~~~~~-~~~~~~~l~~~~g~s~--~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l----~  135 (449)
                      .++..+++.. ...+.+.++.+++.+.  ...+++.++.+++..++++++|+++||+|||++++++.++..+.++    +
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~   97 (1146)
T PRK08633         18 QFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLA   97 (1146)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444432 2333344555666654  3467788888899999999999999999999999988776554332    3


Q ss_pred             HHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-------
Q 013096          136 KSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGI-------  208 (449)
Q Consensus       136 ~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~-------  208 (449)
                      ...++++.+++.|+++|++.+...++..+ ++.|.    .+.++.+++++....+..++.++++.+++++.+.       
T Consensus        98 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~-~i~~~----~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~  172 (1146)
T PRK08633         98 YYLGWFWLAFAVTFLLGAQSAIYSPAKYG-IIPEL----VGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPS  172 (1146)
T ss_pred             HHHccHHHHHHHHHHHHHHHHhhchHHHh-hhHHh----cCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            45578999999999999999988777654 44444    3444566677777777778888899999988764       


Q ss_pred             -cccCCcchhHHHHH-HHHHHHHHHHHhccccCCCCCc----c------hhhhhhhHhhhcChhHHHHHHHHHHHHHHHH
Q 013096          209 -DVKKGVVPSSTASV-FLSILGIICVSRGWTENPKMAF----D------DYRTSFFTYIFGDKRIWLLVLAQACLQFSIA  276 (449)
Q Consensus       209 -~~~~g~~~~f~~~~-~~~~~~~~~i~~~~~e~~~~~~----~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  276 (449)
                       +  .+|++.+.+.. ...++..+ .....||.+..+.    +      +.....++.++++|.++...+...+.....+
T Consensus       173 ~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  249 (1146)
T PRK08633        173 EI--LGRIAPAGLVLLAVAVLGLI-FAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQ  249 (1146)
T ss_pred             cc--ccchHHHHHHHHHHHHHHHH-HHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence             2  12333333322 22222222 2234455443211    0      1112456778888887765544444433322


Q ss_pred             HHHHHhhhhhccC--C-Ccc-chHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHH
Q 013096          277 LFWILWAPTLVAD--G-REV-HLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGI  352 (449)
Q Consensus       277 ~~~~~~~p~~~~~--~-~~~-~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~  352 (449)
                      . ...+.|.+..+  + +.. ..|+++....++.++|+.+.+++.|   |.++++.+.++.++.++++....... +.+.
T Consensus       250 ~-~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~---r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  324 (1146)
T PRK08633        250 L-AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSG---RHIELGLVPLGALGLALSLFLLPTAP-SLAS  324 (1146)
T ss_pred             H-HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC---CceEccchhHHHHHHHHHHHHHHHhh-hHHH
Confidence            2 23456666543  2 334 5788888888889999999999998   56666655555444444444333332 3333


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHh
Q 013096          353 LVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFY  409 (449)
Q Consensus       353 ~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~  409 (449)
                      .++.+++++++.++..+..+++.++..|++.||+++|+.++..+++...++..+.+.
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        325 VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            445555667778888888888999999999999999998877776654444444433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.92  E-value=6.7e-22  Score=195.08  Aligned_cols=314  Identities=13%  Similarity=0.038  Sum_probs=202.6

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-----CchHHH-HHHHHHHHHHHH-HHHh---cch
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI-----GQKKVC-LIFFILHLFVGV-WKSI---TAH  141 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-----GRr~~l-l~~~~~~~~~~l-~~~~---~s~  141 (449)
                      +.++..|.+.+|+|+|.+|++..... .+...+ ++++|+++||+     ||||.+ +.+.+..+++.. ..+.   .++
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l   83 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL   83 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence            44566778889999999999988655 444444 88999999998     999985 556666665543 4454   466


Q ss_pred             hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc-----cCCcch
Q 013096          142 PSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV-----KKGVVP  216 (449)
Q Consensus       142 ~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~-----~~g~~~  216 (449)
                      +.+....++.+++.+...++.+++ +.|.    .++++.+++.+....+..++.++++.+++++.+...     .|+||.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~-~~~~----~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~  158 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAW-RLEI----LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY  158 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHh----CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence            677777888888777766666653 4444    233445566666666667777888888887776551     133999


Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCC--cch---hhhhhhHhhhcChh---HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 013096          217 SSTASVFLSILGIICVSRGWTENPKMA--FDD---YRTSFFTYIFGDKR---IWLLVLAQACLQFSIALFWILWAPTLVA  288 (449)
Q Consensus       217 ~f~~~~~~~~~~~~~i~~~~~e~~~~~--~~~---~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~  288 (449)
                      +|++.++..++..+...+..||+++++  +++   ..++.++++++||.   .+...+...+.... +.....+.|.+.+
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  237 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLG-DSAATVLTTLFLL  237 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            999877766555443333345543221  111   12345777888775   54444333333322 2223446676665


Q ss_pred             C-C-CccchHHHHHHHH-HHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcc--c--------chhHHHHH
Q 013096          289 D-G-REVHLGLIFPSLL-GARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD--Y--------QEIGILVA  355 (449)
Q Consensus       289 ~-~-~~~~~g~i~~~~~-~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~--~--------~~~~~~~~  355 (449)
                      + + +..+.|.+....+ ++.++|..+.+++.|   |+++++.+..+.++.++......+.  .        .+.+....
T Consensus       238 ~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~---r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (356)
T TIGR00901       238 DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQ---PLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFL  314 (356)
T ss_pred             HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH
Confidence            4 2 3445666665554 467789999999999   7888777665554444433322211  1        12233344


Q ss_pred             HHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHH
Q 013096          356 LFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPAN  396 (449)
Q Consensus       356 ~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~  396 (449)
                      ..++.+++.++..+...++.+|.+|+++||+.+|+.++..+
T Consensus       315 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       315 TITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            45566788888999999999999999999999998766543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.92  E-value=3.4e-21  Score=192.96  Aligned_cols=343  Identities=13%  Similarity=0.085  Sum_probs=202.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-H---H
Q 013096           62 LFSLASVMEGLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-W---K  136 (449)
Q Consensus        62 ~~~l~~~~~~~~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~---~  136 (449)
                      .+++...+.+...|+.+...+ ++|.|+.++|++.+...+...+++++.|+++||+||||.++.+...+++... .   .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~   89 (396)
T TIGR00882        10 FFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYV   89 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555567787765554 6899999999999999999999999999999999999999887666554322 1   1


Q ss_pred             Hh-----cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Q 013096          137 SI-----TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVK  211 (449)
Q Consensus       137 ~~-----~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~  211 (449)
                      ..     +....+++.|+++|++.+...+..+++. .+.. |+..     ..++.......++.+++|.+++.+.+    
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~-----~~~g~~~~~~~~g~~~g~~~~g~l~~----  158 (396)
T TIGR00882        90 FGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYI-EKVS-RNSN-----FEYGKARMFGCVGWALCASIAGILFS----  158 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH-HHhh-hhcc-----cccchhhhhcccHHHHHHHHHhhhhc----
Confidence            11     1233456778889988887777665543 3321 1111     12233333445566778888887653    


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhccccCCCCCc---------chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHh
Q 013096          212 KGVVPSSTASVFLSILGIICVSRGWTENPKMAF---------DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILW  282 (449)
Q Consensus       212 ~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (449)
                      .+|+.+|++.+.+.++..++.....||++++++         ++.+.+++++++|||+++...+...+... .+.....|
T Consensus       159 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-~~~~~~~~  237 (396)
T TIGR00882       159 IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVAC-VYDVFDQQ  237 (396)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHH
Confidence            388999988766555444333333344322110         01112346788999988765544333322 22222334


Q ss_pred             hhhhccC-----C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 013096          283 APTLVAD-----G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVAL  356 (449)
Q Consensus       283 ~p~~~~~-----~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  356 (449)
                      .|.+.++     + +....|...+...+...++....+++.|   |+++++.+..+..+.++......... +.+.....
T Consensus       238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~---r~g~~~~l~~~~~l~~l~~~~~~~~~-~~~~~~~~  313 (396)
T TIGR00882       238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIIN---RIGAKNALLIAGTIMSVRIIGSSFAT-TALEVVIL  313 (396)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHhcC-ChHHHHHH
Confidence            5555432     1 1233566666666677778888999999   78888877766655555444333322 33333333


Q ss_pred             HHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHh-hHHHHHHHHHHHHHH-hHHhhhcchhHHHHH
Q 013096          357 FCLFHACVGLILPSLARLRTMYVPNELRGGMISL-SLAPANAAILLFLLL-RGFYRNIENAAMVAF  420 (449)
Q Consensus       357 ~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~-~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~  420 (449)
                      .++.+.+.+........+..+..|++.+++..+. .+...+++...++.. |.+.+..|++..+.+
T Consensus       314 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~  379 (396)
T TIGR00882       314 KMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLV  379 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence            3344444443333444455667788888776655 445555554444433 455566666554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.92  E-value=6.7e-22  Score=196.61  Aligned_cols=329  Identities=13%  Similarity=0.049  Sum_probs=196.5

Q ss_pred             HHHHHHHHHhC--CChHHHHHHH-----HHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchh----
Q 013096           75 VFGEYELVYYG--VAKEQMMLLL-----CAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHP----  142 (449)
Q Consensus        75 ~~~~~l~~~~g--~s~~~ig~l~-----~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~----  142 (449)
                      +..+.+.+++.  .++++.+.+.     ..+++...+++++.|+++||+||||+++.+.++..++++ +.++++++    
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~   93 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGI   93 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHH
Confidence            33344444432  4456666433     344555567889999999999999999999999888776 77788765    


Q ss_pred             ----HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc-----ccCC
Q 013096          143 ----SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID-----VKKG  213 (449)
Q Consensus       143 ----~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~-----~~~g  213 (449)
                          .+++.|+++|++.+...+...+ ++.|..    ++++.++..+....+..++.++++.++..+....     ..++
T Consensus        94 ~~~~~~~~~r~l~G~~~~~~~~~~~~-~~~~~~----~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~  168 (394)
T TIGR00883        94 WAPILLLLARLIQGFSLGGEWGGAAL-YLAEYA----PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWG  168 (394)
T ss_pred             HHHHHHHHHHHHHHhhccccccccHH-HhhhcC----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccc
Confidence                5889999999999887776554 344432    2333445555555555666666666655442200     1358


Q ss_pred             cchhHHHHHHHHHHHHHHHHhccccCCCCCc----chhhhhhhHhhhcChh--HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 013096          214 VVPSSTASVFLSILGIICVSRGWTENPKMAF----DDYRTSFFTYIFGDKR--IWLLVLAQACLQFSIALFWILWAPTLV  287 (449)
Q Consensus       214 ~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~----~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~  287 (449)
                      ||++|.+.....+++.. .....||+++.++    ++..++++++.+++++  ++.......+.... +.....+.|.+.
T Consensus       169 w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  246 (394)
T TIGR00883       169 WRIPFLVSAVLVLIGLY-LRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTT-FYLITTYLPTYL  246 (394)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            99999887666555443 3334566543211    1112234566666654  44433333222222 223344677776


Q ss_pred             cC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHH-HHH-HHHhc-ccchhHHHHHHHHHHH
Q 013096          288 AD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLG-FVF-SIIAY-DYQEIGILVALFCLFH  361 (449)
Q Consensus       288 ~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~-~~l-~~~~~-~~~~~~~~~~~~~l~~  361 (449)
                      ++  + ++.+.+.......++..++..+.+++.|   |+++++.+.....+.. ..+ ..... ...+.+......++.+
T Consensus       247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d---r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (394)
T TIGR00883       247 TQTLGLSANSALLVLMLSLILFFITIPLSGALSD---RIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLA  323 (394)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            43  2 3445666666677788889999999999   7887775553322222 111 11112 1222333334445566


Q ss_pred             HHhhhhhhHHHHHHhccCCCcchhHHHHhhH-HHHHHHHHHHHHH-hHHhhhcc
Q 013096          362 ACVGLILPSLARLRTMYVPNELRGGMISLSL-APANAAILLFLLL-RGFYRNIE  413 (449)
Q Consensus       362 ~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~-~~~~~~~~~~~~~-g~~~~~~~  413 (449)
                      ++.+...+..++..+|.+|++.|+++.++.. .....+...++.. |.+.+..+
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       324 LIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            6777788888899999999999999888743 3333443334443 44455544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.3e-21  Score=187.84  Aligned_cols=331  Identities=17%  Similarity=0.157  Sum_probs=219.8

Q ss_pred             hhhhHHHHHH---HHHHHHHhh-hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH
Q 013096           53 VPFQRNFLLL---FSLASVMEG-LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL  128 (449)
Q Consensus        53 ~~~~~~~~~~---~~l~~~~~~-~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~  128 (449)
                      |+-|++.+.+   ++...+.-| +.+|..+.+-+++|+|++|.+++.++..+.+.+..++.|.+.||+|-|++...+.++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l   88 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLL   88 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHH
Confidence            4444444433   334444445 356777777789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhc---chhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013096          129 HLFVGV-WKSIT---AHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANW  204 (449)
Q Consensus       129 ~~~~~l-~~~~~---s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~  204 (449)
                      ..+-++ .+++.   |++++++.+++.|++.+...... .     +..+-+|+++.+.+++....+ +++..+...++.+
T Consensus        89 ~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m-~-----~~s~~fP~~~qG~AlGI~g~G-N~G~av~q~~~P~  161 (417)
T COG2223          89 LLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM-P-----NASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPL  161 (417)
T ss_pred             HHHHHHHHHHHccCCchHHHHHHHHHHhcccceehccc-c-----cccccCChhhhhHHHHHhccc-cccHHHHHHHHHH
Confidence            888776 56654   45699999999999987543221 1     123447888888888877633 3444445555555


Q ss_pred             HhcccccCC---cchhHHHHHHHHHHHHHHHHhccccCCC-CCcchhhh-hhhHhhhcChhHHHHHHHHHHHHHHHHHHH
Q 013096          205 LVGIDVKKG---VVPSSTASVFLSILGIICVSRGWTENPK-MAFDDYRT-SFFTYIFGDKRIWLLVLAQACLQFSIALFW  279 (449)
Q Consensus       205 l~~~~~~~g---~~~~f~~~~~~~~~~~~~i~~~~~e~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  279 (449)
                      +....   +   |+..-.+-.+..++..+..++..++.+. +++++.++ ..++.+++||++|.+.+.....+++ +...
T Consensus       162 v~~~~---g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~-Fvgf  237 (417)
T COG2223         162 VAVAF---GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGG-FVGF  237 (417)
T ss_pred             HHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHH-HHHH
Confidence            55444   4   6665555554444444444444444433 22222222 5588899999999887765544443 4444


Q ss_pred             HHhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc------chh
Q 013096          280 ILWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY------QEI  350 (449)
Q Consensus       280 ~~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~------~~~  350 (449)
                      ..|.|.+++++   ++.+.|.+.........+...+.|+++|   |++.+|.+...+..+.++..+..+..      .+.
T Consensus       238 s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD---R~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~  314 (417)
T COG2223         238 SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD---RIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF  314 (417)
T ss_pred             HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhh---hccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence            66889988763   4455666655555666677889999999   89999988777666665555444332      223


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHH
Q 013096          351 GILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAA  398 (449)
Q Consensus       351 ~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~  398 (449)
                      ...+..++...++.|+...+...++...+|+ +-|.+.|+.....+++
T Consensus       315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lG  361 (417)
T COG2223         315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLG  361 (417)
T ss_pred             HHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhcccc
Confidence            3344445555667777777766666666664 4577788766655554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.89  E-value=2.4e-19  Score=179.24  Aligned_cols=349  Identities=12%  Similarity=0.010  Sum_probs=200.3

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHH--HHHHHhHHHHHHHHHh-hhhhhCchHHHHHHHHHH-HHHHH-HH
Q 013096           62 LFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLL--CAGFSAALFVGSFLGM-ISDLIGQKKVCLIFFILH-LFVGV-WK  136 (449)
Q Consensus        62 ~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~--~~~~~~~~l~~~~~G~-laDr~GRr~~ll~~~~~~-~~~~l-~~  136 (449)
                      +|+.-....++..|+.|...+|.|.|++++|...  ........+.+|+.+. .+||+||||..+..+.+. ..... ..
T Consensus         9 ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~   88 (390)
T TIGR02718         9 LYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLA   88 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHH
Confidence            3444444456778999999999999999999863  5557778888888844 799999999976654332 21111 22


Q ss_pred             -H--hcc-hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccC
Q 013096          137 -S--ITA-HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKK  212 (449)
Q Consensus       137 -~--~~s-~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~  212 (449)
                       .  .++ ..+++..-.+.++..+..-+..+++     ..+..++++.+...+....+..++.++++.+.+++.+..   
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~-----~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~---  160 (390)
T TIGR02718        89 LVGPDVAGAGWAVGLLACASLASATQDIATDGM-----AAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF---  160 (390)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence             1  222 2233333333333333333333322     222234444444444444455667777777777777755   


Q ss_pred             CcchhHHHHHHHHHHHHHHHHhccccCCCCCc-chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C
Q 013096          213 GVVPSSTASVFLSILGIICVSRGWTENPKMAF-DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G  290 (449)
Q Consensus       213 g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~  290 (449)
                      |||.+|++.+.+.++..+...+..||++++++ ++.+..++++++|||+.+.......+........ ..+.|.+..| +
T Consensus       161 gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l~~~G  239 (390)
T TIGR02718       161 GQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSG-FGLSKLYLVDAG  239 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH-HHHhhHHHHhcC
Confidence            89999998776655544433333333222211 1222334678888888765554444433322222 2345555544 3


Q ss_pred             -CccchHHHHHHHH-HHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHH-HHhcc----cchhHHHHHHHHHHHHH
Q 013096          291 -REVHLGLIFPSLL-GARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFS-IIAYD----YQEIGILVALFCLFHAC  363 (449)
Q Consensus       291 -~~~~~g~i~~~~~-~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~----~~~~~~~~~~~~l~~~~  363 (449)
                       ++.+.|.++.... ...++|..+.+++.|   |++++|.+..+..+.++... .....    ............+.+++
T Consensus       240 ~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~---r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (390)
T TIGR02718       240 WPLEWIGRLGMAGGAVTVLLGCGGGAWLVR---RAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLI  316 (390)
T ss_pred             CCHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHH
Confidence             3455677766554 366788889999999   78888877655443322111 11111    11111222222333455


Q ss_pred             hhhhhhHHHHHHhccCCC-cchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHH
Q 013096          364 VGLILPSLARLRTMYVPN-ELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAA  422 (449)
Q Consensus       364 ~g~~~p~~~~~~~~~~p~-~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~  422 (449)
                      .|...+...+...+..++ +.+|+.++..+...+++...++.. |.+.+..+++..+..+.
T Consensus       317 ~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~  377 (390)
T TIGR02718       317 TGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGT  377 (390)
T ss_pred             HHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            677777777777777766 789999999988888876555555 44456566655444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.89  E-value=1.7e-20  Score=190.12  Aligned_cols=321  Identities=14%  Similarity=0.072  Sum_probs=192.5

Q ss_pred             hhhhHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh----hCchH-HHHHHHHHHHHHHH-HHHhcc---
Q 013096           71 GLWSVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDL----IGQKK-VCLIFFILHLFVGV-WKSITA---  140 (449)
Q Consensus        71 ~~~~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr----~GRr~-~ll~~~~~~~~~~l-~~~~~s---  140 (449)
                      .+..++++..+ +++|+|+.++|.+.++..+..++.+|+.|+++||    +|||| .++.+....+++.+ +...++   
T Consensus        16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~   95 (437)
T TIGR00792        16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSA   95 (437)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCc
Confidence            34455554445 4789999999999999999999999999999998    78855 46667777776654 544443   


Q ss_pred             ---hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc----ccCC
Q 013096          141 ---HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID----VKKG  213 (449)
Q Consensus       141 ---~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~----~~~g  213 (449)
                         +..+++.+++.+++.+.......+ +..|..   .+.++.++..+.......++.++++.+.+.+....    ..++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~---~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g  171 (437)
T TIGR00792        96 TGKLVYAYITYILLGLFYSFVNIPYWS-LVPAIT---LDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG  171 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcccHhh-Cccccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence               456777888888887764433333 222221   12233344444433333333333333322222110    0248


Q ss_pred             cchhHHHHHHHHHHHHHHHHhccccCCCC-Cc--c--hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 013096          214 VVPSSTASVFLSILGIICVSRGWTENPKM-AF--D--DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVA  288 (449)
Q Consensus       214 ~~~~f~~~~~~~~~~~~~i~~~~~e~~~~-~~--~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  288 (449)
                      ||..+.+..++.++..+...+..||++++ ++  +  ...++.++.+++||+++.+.+...+.....+.. ..+.|.+.+
T Consensus       172 ~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  250 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIK-NGVQVYYFT  250 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-cchhheeEe
Confidence            88888876666555544444455665422 11  1  112345778899998887655444443333322 223454443


Q ss_pred             C--CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhh
Q 013096          289 D--GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGL  366 (449)
Q Consensus       289 ~--~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~  366 (449)
                      +  +++...+.......++.+++..+.+++.|   |+++++....+..+.++......+..++.+......++.+++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~---r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  327 (437)
T TIGR00792       251 YVLGDPELFSYMGSIAIVAGLIGVLLFPRLVK---KFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNF  327 (437)
T ss_pred             eecCChHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence            3  22333455555566788899999999999   788887766665544444433333222333334444556677777


Q ss_pred             hhhHHHHHHhccCC-------CcchhHHHHhhHHHHHHHH
Q 013096          367 ILPSLARLRTMYVP-------NELRGGMISLSLAPANAAI  399 (449)
Q Consensus       367 ~~p~~~~~~~~~~p-------~~~rg~~~~~~~~~~~~~~  399 (449)
                      ..+...++.+|..|       ++.+|+.+|+.+....++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~  367 (437)
T TIGR00792       328 VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ  367 (437)
T ss_pred             HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence            78888888877765       4557888888887666654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.89  E-value=1.5e-19  Score=185.34  Aligned_cols=316  Identities=12%  Similarity=0.034  Sum_probs=184.5

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh-hCchHHHHHHHHHHHHHHH-HHHhcchhH-HHHHHHHHHhH
Q 013096           78 EYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDL-IGQKKVCLIFFILHLFVGV-WKSITAHPS-VWVANICLSLA  154 (449)
Q Consensus        78 ~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr-~GRr~~ll~~~~~~~~~~l-~~~~~s~~~-l~~~R~l~Glg  154 (449)
                      ..+.+++|+++++.+++...+.....+..+++|+++|| +||||+++++.+++.++++ +.++++.+. ++++|+++|+|
T Consensus        39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig  118 (489)
T PRK10207         39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVG  118 (489)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Confidence            34446899999998888887777777778899999999 9999999999999999876 777766554 55899999999


Q ss_pred             HHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHH---
Q 013096          155 SSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIIC---  231 (449)
Q Consensus       155 ~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~---  231 (449)
                      .|...+...+ ++.|.-+++.+  +..+.++.......++..++|.+++++.++.   |||+.|.+..+..++..+.   
T Consensus       119 ~g~~~~~~~~-li~~~~p~~~~--~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~---gw~~~F~i~~i~~~~~~~~~~~  192 (489)
T PRK10207        119 NGLFKANPAS-LLSKCYPPKDP--RLDGAFTLFYMSINIGSLISLSLAPVIADKF---GYSVTYNLCGAGLIIALLVYFA  192 (489)
T ss_pred             cccccCCHHH-HHHHhcCCCch--hhhcchhHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHHHHHH
Confidence            9988777654 45554222211  2334566666677778888999999998865   8999998754332222211   


Q ss_pred             HHhccccCCCC--C-cchhh-------------------hh--hh-----------------------HhhhcChhHHHH
Q 013096          232 VSRGWTENPKM--A-FDDYR-------------------TS--FF-----------------------TYIFGDKRIWLL  264 (449)
Q Consensus       232 i~~~~~e~~~~--~-~~~~~-------------------~~--~~-----------------------~~l~~~~~~~~~  264 (449)
                      ..+..++.+++  + +.+..                   .+  ..                       ++++|+|.+...
T Consensus       193 ~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~  272 (489)
T PRK10207        193 CRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAF  272 (489)
T ss_pred             cchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            11122221111  1 00100                   00  00                       012222222221


Q ss_pred             HHH-HHHHHHHHHHHHHHhhhhhccC-CC------ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchh-------HH
Q 013096          265 VLA-QACLQFSIALFWILWAPTLVAD-GR------EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTED-------CL  329 (449)
Q Consensus       265 ~~~-~~~~~~~~~~~~~~~~p~~~~~-~~------~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~-------~l  329 (449)
                      .+. ........+.......|.+.++ .+      +...+.+...+.+..++.+++.+++.+   |.++++       ..
T Consensus       273 ~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~---rl~~r~~~~~~~~k~  349 (489)
T PRK10207        273 VLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYT---HLGSKGKDLSMPMKF  349 (489)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHH---HHhhCCCCCCcHHHH
Confidence            111 1111222222111223333332 11      112222323333445455555666665   333332       34


Q ss_pred             HHHHHHHHHHHHHH-----hcc----cchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHH
Q 013096          330 LYAFVVLGFVFSII-----AYD----YQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAIL  400 (449)
Q Consensus       330 ~~~~~~~~~~l~~~-----~~~----~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~  400 (449)
                      ..++.+.++++...     .+.    ..+.++.+...++.+++.++..|...+...+..|++.+|.++|+.....+++..
T Consensus       350 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~  429 (489)
T PRK10207        350 TLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL  429 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            45555554443221     111    113344556777788999999999999999999999999999998876666543


Q ss_pred             HH
Q 013096          401 LF  402 (449)
Q Consensus       401 ~~  402 (449)
                      .+
T Consensus       430 lg  431 (489)
T PRK10207        430 LG  431 (489)
T ss_pred             HH
Confidence            33

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=8.9e-19  Score=179.31  Aligned_cols=322  Identities=13%  Similarity=0.058  Sum_probs=193.6

Q ss_pred             hhHHHHHHHH-H--hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh-hCchHHHHHHHHHHHHHHH-HHHhcchhHHHHH
Q 013096           73 WSVFGEYELV-Y--YGVAKEQMMLLLCAGFSAALFVGSFLGMISDL-IGQKKVCLIFFILHLFVGV-WKSITAHPSVWVA  147 (449)
Q Consensus        73 ~~~~~~~l~~-~--~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr-~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~  147 (449)
                      ..++++...+ +  +|.|+.+.+.+.+...+...++.+++|+++|| +||||+++++.++++++.+ .+++++.+.+.+.
T Consensus        29 ~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~  108 (475)
T TIGR00924        29 MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYG  108 (475)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence            4555554444 4  89999999999999999999999999999999 8999999999999988776 6677888899999


Q ss_pred             HHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q 013096          148 NICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSIL  227 (449)
Q Consensus       148 R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~  227 (449)
                      |.+.|+|.|...++..+ ++.|..+++.+ ++.++.++.......++.+++|.+++++.+.+   ||++.|.+.++..++
T Consensus       109 ~~l~g~g~g~~~~~~~~-~~a~~~~~~~~-~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~---g~~~~f~~~~~~~~~  183 (475)
T TIGR00924       109 LGTIAVGSGLFKANPSS-MVGKLYERGDM-PRRDGGFTLFYMSINIGSFISPLLAGVIAENY---GYHVGFNLAAVGMVI  183 (475)
T ss_pred             HHHHHhccccccCCHHH-HHHHhcCCCCc-ccccceehhHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHHHH
Confidence            99999999887776654 44444222211 12334566656666677888999999887755   899999876544333


Q ss_pred             HHHHHHh---ccccCCCCC----cch--hhhh--------------------h--------------------------h
Q 013096          228 GIICVSR---GWTENPKMA----FDD--YRTS--------------------F--------------------------F  252 (449)
Q Consensus       228 ~~~~i~~---~~~e~~~~~----~~~--~~~~--------------------~--------------------------~  252 (449)
                      +.+....   ..++.++++    +++  ..+.                    .                          .
T Consensus       184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (475)
T TIGR00924       184 GLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRL  263 (475)
T ss_pred             HHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3222211   111111111    000  0000                    0                          0


Q ss_pred             HhhhcChhHHHHH--HHHHHHHHHHHHHHHHhhhhhccC---C----CccchHHHHHHHHHHHHHhhhHHH----HHhcC
Q 013096          253 TYIFGDKRIWLLV--LAQACLQFSIALFWILWAPTLVAD---G----REVHLGLIFPSLLGARMLGSTVFP----WLISG  319 (449)
Q Consensus       253 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~---~----~~~~~g~i~~~~~~~~~lg~~l~~----~l~~~  319 (449)
                      ...-++ +...+.  +.........|.-...-.|.+.++   .    .+.+.+.+.+.+.+..++...+..    ++.+|
T Consensus       264 ~~~~~~-~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~  342 (475)
T TIGR00924       264 DAVARN-KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK  342 (475)
T ss_pred             CHHHHh-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence            000011 111111  111111112221111112333222   1    223456676666666665555433    45553


Q ss_pred             CCCCCchhH--HHHHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHH
Q 013096          320 PSSFRTEDC--LLYAFVVLGFVFSIIAY--------DYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMIS  389 (449)
Q Consensus       320 ~~~~~~~~~--l~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~  389 (449)
                      .  .+++..  ..++.++.+++......        ...+.++.+..+++.+++..+..|...++..+..|++.||+.+|
T Consensus       343 ~--~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g  420 (475)
T TIGR00924       343 G--KDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLG  420 (475)
T ss_pred             C--CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHH
Confidence            1  222222  24455555544433321        12245556777788899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q 013096          390 LSLAPANAAILLF  402 (449)
Q Consensus       390 ~~~~~~~~~~~~~  402 (449)
                      +......++...+
T Consensus       421 ~~~l~~~~g~~l~  433 (475)
T TIGR00924       421 MWFLAQAMGSLLG  433 (475)
T ss_pred             HHHHHHHHHHHHH
Confidence            9887766654333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.88  E-value=1.6e-18  Score=165.68  Aligned_cols=339  Identities=13%  Similarity=0.033  Sum_probs=223.9

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHH----HHhc
Q 013096           64 SLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVW----KSIT  139 (449)
Q Consensus        64 ~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~----~~~~  139 (449)
                      ++-.+.+.+..+..|.+.+.++++..|.+++..+.+.++.+.+++.|.+.||+|+|+-++.++.++++++.+    +...
T Consensus        23 fl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~  102 (422)
T COG0738          23 FLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK  102 (422)
T ss_pred             HHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            344444556678888888999999999999999999999999999999999999999999999999998853    2346


Q ss_pred             chhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-----------
Q 013096          140 AHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGI-----------  208 (449)
Q Consensus       140 s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~-----------  208 (449)
                      ++..++++-++.|.|.+..-++.+. ++...-+    ++.-++-++.++..++++++++|.+++.++.+           
T Consensus       103 ~y~~FL~~lFila~Gi~~LetaaNp-~v~~lg~----~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~  177 (422)
T COG0738         103 SYGFFLVALFILASGIGLLETAANP-YVTLLGK----PESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQI  177 (422)
T ss_pred             hHHHHHHHHHHHHhhhHHHHhccch-HHHHhCC----chhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHH
Confidence            8889999999999999987777665 4443321    11223344566677888889999999887662           


Q ss_pred             c----c-cCCcchhHHHHHHHHHHHHH-HHHhccccCCCCCcchhh--hhhhHhhhcChhHHHHHHHHHHHHHHHHHHHH
Q 013096          209 D----V-KKGVVPSSTASVFLSILGII-CVSRGWTENPKMAFDDYR--TSFFTYIFGDKRIWLLVLAQACLQFSIALFWI  280 (449)
Q Consensus       209 ~----~-~~g~~~~f~~~~~~~~~~~~-~i~~~~~e~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  280 (449)
                      .    . -..++.||...+...++..+ ....+.||.+..+.++.+  .....++++||+.+...+.+++.-+ .-.-+.
T Consensus       178 ~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG-~Eva~g  256 (422)
T COG0738         178 LAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVG-AEVAIG  256 (422)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHh-HHHHHH
Confidence            0    0 01366788765444333322 222344554443222211  1146789999998877766555432 233335


Q ss_pred             HhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 013096          281 LWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALF  357 (449)
Q Consensus       281 ~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~  357 (449)
                      .|.|.+..+  + ++.+.+...+.+.++.++|..+..++.+   |++++|.+.....+..+.+....+.++  .+.+...
T Consensus       257 sfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~---~~~~~k~Laf~a~~~ill~~~~~l~~g--~v~~~~l  331 (422)
T COG0738         257 SFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS---RIKPEKYLAFYALIAILLLLAVALIGG--VVALYAL  331 (422)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHH
Confidence            577877765  2 3344556667777888999999999998   788889877644333222223334332  2334445


Q ss_pred             HHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhcch
Q 013096          358 CLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIEN  414 (449)
Q Consensus       358 ~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  414 (449)
                      .+.++.++..+|...++..+..| ++-..+.++.-+..-.+.+.++++|...|..+.
T Consensus       332 ~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~  387 (422)
T COG0738         332 FLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGI  387 (422)
T ss_pred             HHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeheecchHHHHHHHHHHHhhhh
Confidence            56688899999999999999988 433333333222222223445556766666553

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.87  E-value=9e-18  Score=172.93  Aligned_cols=306  Identities=13%  Similarity=0.077  Sum_probs=179.1

Q ss_pred             HHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh-hCchHHHHHHHHHHHHHHH-HHHhc-chhHHHHHHHHHHhHHHH
Q 013096           81 LVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDL-IGQKKVCLIFFILHLFVGV-WKSIT-AHPSVWVANICLSLASSI  157 (449)
Q Consensus        81 ~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr-~GRr~~ll~~~~~~~~~~l-~~~~~-s~~~l~~~R~l~Glg~~~  157 (449)
                      .+++|+|+++.+.+.+..........+++|+++|| +|||++++.+.+++.++.. +.+++ +.+.+++.|+++|+|.|.
T Consensus        49 ~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~  128 (500)
T PRK09584         49 VKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGL  128 (500)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhc
Confidence            36899999988877766554444555789999999 5999999999999888765 66654 566778899999999997


Q ss_pred             hhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH---HHHHHh
Q 013096          158 FSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG---IICVSR  234 (449)
Q Consensus       158 ~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~---~~~i~~  234 (449)
                      ..+...+ ++.|.-+++  +++..+.++.......++..++|.+++++.+.+   |||+.|.+..+..+++   .+...+
T Consensus       129 ~~~~~~~-l~~~~f~~~--~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~---g~~~~F~i~~i~~~i~~i~~~~~~~  202 (500)
T PRK09584        129 FKANPSS-LLSTCYEKD--DPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY---GWSVAFALSVVGMLITVVNFAFCQR  202 (500)
T ss_pred             ccCCHHH-HHHHhcCCC--chhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            7666544 444432111  112333555555666777888999999988765   8999999866533332   222233


Q ss_pred             ccccCCC-CC-c-chhhh---------------------hh-----------------hHhhhc-----ChhHHHHHHHH
Q 013096          235 GWTENPK-MA-F-DDYRT---------------------SF-----------------FTYIFG-----DKRIWLLVLAQ  268 (449)
Q Consensus       235 ~~~e~~~-~~-~-~~~~~---------------------~~-----------------~~~l~~-----~~~~~~~~~~~  268 (449)
                      ..+|..+ ++ + .+..+                     ..                 .+...+     ++|.+.... .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  281 (500)
T PRK09584        203 WVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFI-L  281 (500)
T ss_pred             HhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-H
Confidence            3343211 11 0 00000                     00                 000000     122222111 1


Q ss_pred             HHHHHHHHHHHHHhhhhhcc----C-C------CccchHHHHHHHHHHHHHhhhHH----HHHhcCCCCCCchhHHHHHH
Q 013096          269 ACLQFSIALFWILWAPTLVA----D-G------REVHLGLIFPSLLGARMLGSTVF----PWLISGPSSFRTEDCLLYAF  333 (449)
Q Consensus       269 ~~~~~~~~~~~~~~~p~~~~----~-~------~~~~~g~i~~~~~~~~~lg~~l~----~~l~~~~~~~~~~~~l~~~~  333 (449)
                       +.....|.....-.|..+.    + .      ...+.+.+.+.+.+..++...+.    +++.+   |.+..+...+++
T Consensus       282 -~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~---r~~~~~~~~~G~  357 (500)
T PRK09584        282 -MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGD---RLPMPHKFAIGM  357 (500)
T ss_pred             -HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCc---CCCcHHHHHHHH
Confidence             1111111111112233321    1 1      11234455555554444444444    55554   555566666777


Q ss_pred             HHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHH
Q 013096          334 VVLGFVFSIIAYDYQ--------EIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANA  397 (449)
Q Consensus       334 ~~~~~~l~~~~~~~~--------~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~  397 (449)
                      .+.+++.........        +.++.+...++.+++.++..|...++..+..|++.||+++|........
T Consensus       358 ~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~  429 (500)
T PRK09584        358 VLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAG  429 (500)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            777766554332211        1334566777888999999999999999999999999999976544433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.2e-19  Score=181.10  Aligned_cols=318  Identities=12%  Similarity=0.075  Sum_probs=209.2

Q ss_pred             HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHH--hcchhHHHHHHHHHHhHHHHhh
Q 013096           83 YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKS--ITAHPSVWVANICLSLASSIFS  159 (449)
Q Consensus        83 ~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~--~~s~~~l~~~R~l~Glg~~~~~  159 (449)
                      +++.|++|.+.+++..+.++.+++.+.|+++||+|-|+++..+.++.++.++ ...  ..+++.+++.|++||++.|..+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~  146 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLF  146 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHH
Confidence            6888999999999999999999999999999999999999999999988775 443  3577788999999999999988


Q ss_pred             hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccC
Q 013096          160 FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTEN  239 (449)
Q Consensus       160 ~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~  239 (449)
                      |+... +    ..+-.|.++.++..+....+..++.+++-++++++.+..  +||+++|++.+....+..++......|+
T Consensus       147 pa~~~-i----~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~--~GW~sifY~~g~~g~i~~~~w~~~~~d~  219 (466)
T KOG2532|consen  147 PAIGS-I----LAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS--LGWPSIFYVFGIVGLIWFILWFLFYSDS  219 (466)
T ss_pred             hhhhc-e----eeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC--CCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence            87533 1    223456677778888877777788888888899988862  4999999986665554433222223333


Q ss_pred             CCC----C--cch---------h----hhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHH
Q 013096          240 PKM----A--FDD---------Y----RTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGL  297 (449)
Q Consensus       240 ~~~----~--~~~---------~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~  297 (449)
                      +.+    .  +++         .    .+.+|+++++++.+|...+...+.+.+.+.+ ..|.|+|+++  + +-.+.|+
T Consensus       220 P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l-~~y~PtY~~~VL~f~v~~~G~  298 (466)
T KOG2532|consen  220 PSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLL-LTYLPTYLKEVLGFDVRETGF  298 (466)
T ss_pred             cccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHhCCChhhhhH
Confidence            221    1  100         0    1236999999999999887776666665554 5689999985  2 2234555


Q ss_pred             HHHHHHHHHHHhhhHHHHHhcCCCC--CCc---hhHH-HHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHhhhhhhH
Q 013096          298 IFPSLLGARMLGSTVFPWLISGPSS--FRT---EDCL-LYAFVVLGFVFSIIAYDYQ-EIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       298 i~~~~~~~~~lg~~l~~~l~~~~~~--~~~---~~~l-~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                      ..+.--+.+.+-..++++++|+..+  .+.   +|.. .++....++.+..+.+..+ ..+..+..+.+.....|...+.
T Consensus       299 ~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~G  378 (466)
T KOG2532|consen  299 LSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISG  378 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhh
Confidence            5444445555555555555552211  221   1221 2345555666665555543 2222333333333344555555


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHh
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFY  409 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~  409 (449)
                      ...-..+..| ++-+.++|+.+...++.....+.. |.+.
T Consensus       379 f~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~  417 (466)
T KOG2532|consen  379 FYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIV  417 (466)
T ss_pred             hHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence            4444444444 667889999998888776555543 5554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.84  E-value=2.4e-17  Score=155.43  Aligned_cols=324  Identities=11%  Similarity=0.051  Sum_probs=217.0

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 013096           73 WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLS  152 (449)
Q Consensus        73 ~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~~~~s~~~l~~~R~l~G  152 (449)
                      .+|.++.+.+|+|+|.++.|++.+.-.++..+++|+..+++.|+|-++.+..++++-.++++.-...+.+.|+.+-.+.|
T Consensus        31 vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~G  110 (395)
T COG2807          31 VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLAG  110 (395)
T ss_pred             hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            47888888899999999999999999999999999999999999999999999888888776444458889999999999


Q ss_pred             hHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHH
Q 013096          153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICV  232 (449)
Q Consensus       153 lg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i  232 (449)
                      .|.+..-     .+.+...||++|++ .+...+.++...+.+..+++.+.-.+.++.  .+||....+-+.+.+++++..
T Consensus       111 ~gIav~n-----VLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~W  182 (395)
T COG2807         111 AGIAVIN-----VLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIW  182 (395)
T ss_pred             hhHHHHH-----HhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHH
Confidence            9988642     24455567887765 566666665555554555555555554443  368877666555555554322


Q ss_pred             HhccccCCCC--CcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHH
Q 013096          233 SRGWTENPKM--AFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARML  308 (449)
Q Consensus       233 ~~~~~e~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~l  308 (449)
                         +|...++  ++.+....+-..++|||..|.+++...+.+.. |+.+..|.|.++.| | +..+.|...+...+..+.
T Consensus       183 ---lPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~-~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~  258 (395)
T COG2807         183 ---LPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLL-YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLP  258 (395)
T ss_pred             ---hhhcccccccccccccccccccccCchhHHHHHHHHhhHHH-HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHH
Confidence               2321111  11111111234689999999888776665554 44557799999876 3 566778777777788888


Q ss_pred             hhhHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcch-hH
Q 013096          309 GSTVFPWLISGPSSFRTEDCLLY-AFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELR-GG  386 (449)
Q Consensus       309 g~~l~~~l~~~~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~r-g~  386 (449)
                      .+.+.+.+.+   |.+.+|.+.. ......+++....+.+.+.. ..+ .++++++.|..+|....+.....++.++ ++
T Consensus       259 ~~ll~P~la~---R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~-~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~  333 (395)
T COG2807         259 TALLIPLLAR---RSKNQRPLVVLALLLMLVGLVGLLLAPGQLP-ILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAA  333 (395)
T ss_pred             HHHHHHHHHH---HhcccchHHHHHHHHHHHHHHHHHHhhhhHH-HHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHH
Confidence            8888898888   4444444333 22222233333323332221 222 3567888899999988888877765554 45


Q ss_pred             HHHhhHHHHHHHHHHHHH-HhHHhhhcc
Q 013096          387 MISLSLAPANAAILLFLL-LRGFYRNIE  413 (449)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~  413 (449)
                      ..++.|...++....++. .|.+.|..+
T Consensus       334 LSgmaQg~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         334 LSGMAQGVGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             HHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence            577788777776544444 466666654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.83  E-value=1.3e-16  Score=156.80  Aligned_cols=356  Identities=18%  Similarity=0.146  Sum_probs=197.0

Q ss_pred             hhhhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHH--HHH--HHH----hcch
Q 013096           71 GLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLF--VGV--WKS----ITAH  141 (449)
Q Consensus        71 ~~~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~--~~l--~~~----~~s~  141 (449)
                      +...|+.+.-.+ +.|+|++|+|.+++++.+...+.+|+.|.++||+|.||-++....+..+  +..  ..+    ..|+
T Consensus        24 gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~  103 (412)
T PF01306_consen   24 GIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNF  103 (412)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-
T ss_pred             HHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677654444 4899999999999999999999999999999999977776654433221  221  111    1233


Q ss_pred             h-HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhh-cCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHH
Q 013096          142 P-SVWVANICLSLASSIFSFNFETWVAIEHEKQ-GQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSST  219 (449)
Q Consensus       142 ~-~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r-~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~  219 (449)
                      + ..+++-+..|+......|..|+ ++.+..++ ++   +.++    .-..++++.+++..++|.+.+.    +.+..|+
T Consensus       104 ~lg~iig~i~l~~~f~~~~~~~Ea-~~er~sr~~~f---eYG~----~R~wGSig~ai~s~~~G~L~~i----~p~~~fw  171 (412)
T PF01306_consen  104 WLGAIIGGIYLGLVFNAGVPLSEA-YAERVSRRNGF---EYGR----ARMWGSIGFAIASLLAGILFNI----NPNIIFW  171 (412)
T ss_dssp             HHHHHHTTTTTTTTTTTHHHHHHH-HHHHHHHHHSS----HHH----HHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccchHHHH-HHHHHHHHhcC---Ccch----HHHHhhHHHHHHHHHhheeeee----CccHHHH
Confidence            2 2223333334444444566665 43333222 22   1222    2233445555566667776653    3346788


Q ss_pred             HHHHHHHHHHHHHHhccccCCCC----Ccc--hhh---hhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc--
Q 013096          220 ASVFLSILGIICVSRGWTENPKM----AFD--DYR---TSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVA--  288 (449)
Q Consensus       220 ~~~~~~~~~~~~i~~~~~e~~~~----~~~--~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--  288 (449)
                      ++....++..++.....|+.+++    +.+  +.+   .+...+++|+|++|.+.+.........+.+-.. -|.+..  
T Consensus       172 i~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqq-f~~y~~~~  250 (412)
T PF01306_consen  172 IASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQ-FPIYFASF  250 (412)
T ss_dssp             HHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            76554443333333222222211    111  111   123567899999998766433333222222211 233322  


Q ss_pred             --C-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Q 013096          289 --D-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACV  364 (449)
Q Consensus       289 --~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  364 (449)
                        + + .+..+|...+.....-.+.-.+.+++.+   |++.|+.+.++..++.+=....++.++ .+.....=.+.++-.
T Consensus       251 f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~---rig~k~~Lllag~i~~iRi~~~~~~~~-~~~i~~~klLH~~e~  326 (412)
T PF01306_consen  251 FQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLIN---RIGAKNLLLLAGVIMAIRIIGSGFATN-PWVISLIKLLHALEF  326 (412)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHT--S-HHHHHHHHHHHHHHH
T ss_pred             hcccccChhHHhHHHHHHHHHHHHHHHHHHHHHH---hcChHhHHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHH
Confidence              2 1 2234777777766777777788999998   899999888776666554444444443 233333334555556


Q ss_pred             hhhhhHHHHHHhccCCCcchhHHHHhh-HHHHHHHH-HHHHHHhHHhhhcchh-HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 013096          365 GLILPSLARLRTMYVPNELRGGMISLS-LAPANAAI-LLFLLLRGFYRNIENA-AMVAFAALGLFIAAGCMHVLKRWGKQ  441 (449)
Q Consensus       365 g~~~p~~~~~~~~~~p~~~rg~~~~~~-~~~~~~~~-~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~  441 (449)
                      ++...+..-+.++.+|++..+|...+. +...+++. +..+..|..+|+.|.. +-++++.+.+...++....+++.+++
T Consensus       327 ~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  327 PLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            667777888999999999999988774 44455543 3445557778888864 44456655555555566666665554


Q ss_pred             CC
Q 013096          442 PY  443 (449)
Q Consensus       442 ~~  443 (449)
                      ..
T Consensus       407 ~~  408 (412)
T PF01306_consen  407 IV  408 (412)
T ss_dssp             TC
T ss_pred             cc
Confidence            33

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.82  E-value=3.9e-18  Score=161.04  Aligned_cols=314  Identities=12%  Similarity=0.058  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHH
Q 013096           89 EQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVA  167 (449)
Q Consensus        89 ~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v  167 (449)
                      .-.|.+-+.+.+.+++.++.+|.+|||||||+++++|++.-+++.+ ++.+.|+..+.++|++.|+.-|.....-  .++
T Consensus        68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~r--Aii  145 (451)
T KOG2615|consen   68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIR--AII  145 (451)
T ss_pred             hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHH--HHH
Confidence            3456777888889999999999999999999999999988888766 8888999666666999999988765442  255


Q ss_pred             HHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHH-H---HHHHHHHHHHHHhccccCCCCC
Q 013096          168 IEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTA-S---VFLSILGIICVSRGWTENPKMA  243 (449)
Q Consensus       168 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~-~---~~~~~~~~~~i~~~~~e~~~~~  243 (449)
                      +|..    ++++.+..++.+....+++.++||++|+++.......| +.||.. .   .++..........+.|||.+.+
T Consensus       146 sdV~----sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r  220 (451)
T KOG2615|consen  146 SDVV----SEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLR  220 (451)
T ss_pred             Hhhc----ChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccch
Confidence            6552    33445556676667777889999999999876110012 345554 1   1222221222334578875432


Q ss_pred             cch-----------hhhh--hh-----HhhhcChhHHHHHHHH--HHHHHHHHHHHH-Hh--hhhhcc-CC---CccchH
Q 013096          244 FDD-----------YRTS--FF-----TYIFGDKRIWLLVLAQ--ACLQFSIALFWI-LW--APTLVA-DG---REVHLG  296 (449)
Q Consensus       244 ~~~-----------~~~~--~~-----~~l~~~~~~~~~~~~~--~~~~~~~~~~~~-~~--~p~~~~-~~---~~~~~g  296 (449)
                      ++.           .+++  ..     ....+|++..-.....  .......|.+++ .|  .+..+. ++   ++.+.|
T Consensus       221 k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G  300 (451)
T KOG2615|consen  221 KRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG  300 (451)
T ss_pred             hhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe
Confidence            110           0000  01     1233444332211100  011111122111 11  222232 21   455566


Q ss_pred             HHHHHHHHHHHHhhhHHHHHhcCCCCCCchh-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHH
Q 013096          297 LIFPSLLGARMLGSTVFPWLISGPSSFRTED-CLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLR  375 (449)
Q Consensus       297 ~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~  375 (449)
                      .++...++.+.+-.....+..++  ..+..+ .+......+.=......... ....+..+..+..++.....|..+.++
T Consensus       301 ~vl~~tGl~m~~~ql~~~~~l~~--~~~~~~a~l~~~l~~~vP~~llls~~~-~~~~l~~~s~l~sf~~A~~vt~Lt~Lv  377 (451)
T KOG2615|consen  301 KVLSTTGLLMLVIQLALVPILPR--YKGNIKAVLLFSLLLIVPAFLLLSLAR-TPVVLYLGSTLKSFSTASVVTCLTSLV  377 (451)
T ss_pred             eeeehhhHHHHHHHHhccccccc--cccchhhHHHHHHHHHHHHHHHHhccc-cchhhhHHHHHHHHHHHHhhHHHHHHH
Confidence            66554444433222222222331  111111 11122111111111111111 222344566677788888889999999


Q ss_pred             hccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhc
Q 013096          376 TMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNI  412 (449)
Q Consensus       376 ~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~  412 (449)
                      .+..|+++||+++|+.++....+=..++++++....+
T Consensus       378 ~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  378 HKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            9999999999999999998888866677766665444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.82  E-value=4.6e-16  Score=155.06  Aligned_cols=345  Identities=18%  Similarity=0.141  Sum_probs=198.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhC-chHHHHHHHHHHHHHH
Q 013096           55 FQRNFLLLFSLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIG-QKKVCLIFFILHLFVG  133 (449)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~G-Rr~~ll~~~~~~~~~~  133 (449)
                      .+.|.-..+++-.+..+...|+.+...++.|+|.+|+|.+.+...+...+..+++|.++||++ +||++.+..++.++..
T Consensus         3 ~~~rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~   82 (400)
T PF03825_consen    3 LKFRLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL   82 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            344455556666666667789887777899999999999999999999999999999999997 5666655555544433


Q ss_pred             H-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHh--hcCChhhHHHHHHHHHHHhHHHHH-HHHHHHHHHhccc
Q 013096          134 V-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEK--QGQRQDILSDTFWLMTFFESAALI-GGQVLANWLVGID  209 (449)
Q Consensus       134 l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~--r~~~~~~l~~~~~~~~~~~~~~~i-~a~~lg~~l~~~~  209 (449)
                      . ....++++.++..-++..+......|..++.-....++  +++++-   |..+....  .++.. .+..+.+.. +. 
T Consensus        83 ~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~i---RlwGSiGf--~~~~~~~~~~~~~~~-~~-  155 (400)
T PF03825_consen   83 LLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRI---RLWGSIGF--IVAALAFGGLLGGYL-GI-  155 (400)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcc---hhhhhHHH--HHHHHHHHHHHHhhh-cc-
Confidence            3 44567888888887777777665566656532221121  223322   23332221  11111 112222221 10 


Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhccccCCCCC--cch---hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 013096          210 VKKGVVPSSTASVFLSILGIICVSRGWTENPKMA--FDD---YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAP  284 (449)
Q Consensus       210 ~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  284 (449)
                        .+...++++.....++...... ..|+.++++  +++   ....+..+++|||+++.+.+...+.+.....+ ..+.+
T Consensus       156 --~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~-~~f~~  231 (400)
T PF03825_consen  156 --SGTSLIFYIAAILSLLLAGFAL-FLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAY-YTFFS  231 (400)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHH-hCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHH-HHHHH
Confidence              1222345554433332222222 345544221  111   11122347899999887655544443322221 22345


Q ss_pred             hhccC-C-C-ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHH----HH
Q 013096          285 TLVAD-G-R-EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVA----LF  357 (449)
Q Consensus       285 ~~~~~-~-~-~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~----~~  357 (449)
                      .++++ + . ....|...+...++-+.--...+++.+   |++.++++.++....++=..+.++..++.+..+.    ..
T Consensus       232 ~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~---r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q  308 (400)
T PF03825_consen  232 IYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLK---RFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQ  308 (400)
T ss_pred             HHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            55554 3 2 233455555545555666677888888   7888888777665555433333343222222121    12


Q ss_pred             HHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHH-HHHHHHHHHH-hHHhhhcc
Q 013096          358 CLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPA-NAAILLFLLL-RGFYRNIE  413 (449)
Q Consensus       358 ~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~-~~~~~~~~~~-g~~~~~~~  413 (449)
                      .+.+...|....+...+..+..|+|.|+++.+++.... +++...+... |.+.+..+
T Consensus       309 ~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  309 LLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            34677788888899999999999999999999887654 3444444444 44455544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1.8e-19  Score=174.62  Aligned_cols=173  Identities=12%  Similarity=0.049  Sum_probs=132.7

Q ss_pred             HHHHHHHHhhhh----hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH
Q 013096           62 LFSLASVMEGLW----SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK  136 (449)
Q Consensus        62 ~~~l~~~~~~~~----~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~  136 (449)
                      +..+....+.++    .-..+.+...+|++++..|++-....+..++++|++|.++|||.||.++.+|..+|+++.+ ++
T Consensus        37 il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~  116 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG  116 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH
Confidence            334444444333    2234566678999999999999999999999999999999999999999999999999876 88


Q ss_pred             HhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcch
Q 013096          137 SITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVP  216 (449)
Q Consensus       137 ~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~  216 (449)
                      ++..+|++.++|.+.|+|.+...|.+++ +++|.    +++++.++.++...+....+..+|.+.|....+.. + .||+
T Consensus       117 fs~~Fwq~~l~R~~vGiGeAs~~~ia~s-~IaD~----f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-~-~Wr~  189 (493)
T KOG1330|consen  117 FSNHFWQVLLCRGFVGIGEASYSPIAPS-LIADS----FPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-F-WWRW  189 (493)
T ss_pred             HHHHHHHHHHHHHHhccchhhhcccchh-Hhhhc----CcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-c-ceEE
Confidence            8899999999999999999998888765 55554    55566677777766665555555656666665554 2 3999


Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCC
Q 013096          217 SSTASVFLSILGIICVSRGWTENPK  241 (449)
Q Consensus       217 ~f~~~~~~~~~~~~~i~~~~~e~~~  241 (449)
                      .|...+++.+++.+++....+|+++
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCccc
Confidence            9998888877776666665666553

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.5e-18  Score=164.77  Aligned_cols=318  Identities=16%  Similarity=0.100  Sum_probs=202.6

Q ss_pred             HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhh
Q 013096           83 YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFN  161 (449)
Q Consensus        83 ~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~  161 (449)
                      +.+-+++++|+++....+.+.+..|+.|.+.||+|+|-.++++..+...+++ .++..+++.++++|.+||+|.+...++
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            4566778999999999999999999999999999999999999998888776 888999999999999999999988777


Q ss_pred             hHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCC
Q 013096          162 FETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPK  241 (449)
Q Consensus       162 ~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~  241 (449)
                      ..+ ++++.-+++   .+.+++++..-...+++.++||..|+.+-+..   |.+.||.+.+.+.++...+.+...+.++.
T Consensus       180 gla-mlAd~f~~d---~er~~vmGialgfislG~lvgPpfGGilYe~~---Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  180 GLA-MLADVFPED---NERGSVMGIALGFISLGVLVGPPFGGILYEFA---GKSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             hHH-HHHHHcccc---hhhhHHHHHHHHHHhccceecCCcccchHhhc---CCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence            655 444432222   23355666554455667788999999887765   88999998776666665554444443333


Q ss_pred             CCcchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc---C---CCccchHHHHHHHHHHHHHhhhHHHH
Q 013096          242 MAFDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVA---D---GREVHLGLIFPSLLGARMLGSTVFPW  315 (449)
Q Consensus       242 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~---~~~~~~g~i~~~~~~~~~lg~~l~~~  315 (449)
                      +++.+.+..+++++++||.++.........+.. ..+   .-|++-.   +   ..+.+.|..|....+...+|..+.+.
T Consensus       253 ~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~-laf---LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~  328 (464)
T KOG3764|consen  253 DPDSTEQGTPMWSLLMDPYILLIAGAITFSNSS-LAF---LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGK  328 (464)
T ss_pred             CccccccCccHHHHHhCchHhhhhcchhhccch-HHH---hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHH
Confidence            232233344588899999888755433222221 111   3454321   1   13446788887777889999999999


Q ss_pred             HhcCCCCCCchhHHHH--HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhh----hHHHHHHhccCCCc---chhH
Q 013096          316 LISGPSSFRTEDCLLY--AFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLIL----PSLARLRTMYVPNE---LRGG  386 (449)
Q Consensus       316 l~~~~~~~~~~~~l~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~----p~~~~~~~~~~p~~---~rg~  386 (449)
                      +.+   |++..|++..  +.+..+.+....-+.+ +..-+++.-+..+++.++..    |....+. +.-.++   ..|.
T Consensus       329 la~---k~~~~~wl~~~~gl~~~G~~~~~iP~~~-~~~~L~vp~~~l~~~i~~~dasl~P~l~~lv-d~rh~s~~~vYGs  403 (464)
T KOG3764|consen  329 LAD---KYPHLRWLLSLGGLATVGVSSGPIPFAT-SIAQLWVPNFGLGFGIGLADASLIPTLGYLV-DPRHVSGFNVYGS  403 (464)
T ss_pred             HHH---hcCchhHHHHHHHHHHHHHHhchhHhhh-hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhc-chhhccccceeee
Confidence            999   6665554432  2233333222211221 11112222222233333333    4433332 211222   5677


Q ss_pred             HHHhhHHHHHHHHHHHHHHh-HHhhhcchhH
Q 013096          387 MISLSLAPANAAILLFLLLR-GFYRNIENAA  416 (449)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~  416 (449)
                      ++++......++-..++..| ...+.+|+..
T Consensus       404 VyaIad~a~sla~a~GP~~gg~iv~~iGF~w  434 (464)
T KOG3764|consen  404 VYAIADAAFSLAYAIGPTFGGSLVEAIGFEW  434 (464)
T ss_pred             HHHHHHHHHHHhhhccccccchheeehhHHH
Confidence            88887777776655555554 4456677544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.80  E-value=2.3e-16  Score=157.83  Aligned_cols=350  Identities=14%  Similarity=0.117  Sum_probs=194.4

Q ss_pred             HHhC--CChHHHHH----HHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH----HHHhcchhHHHHHHHHH
Q 013096           82 VYYG--VAKEQMML----LLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV----WKSITAHPSVWVANICL  151 (449)
Q Consensus        82 ~~~g--~s~~~ig~----l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l----~~~~~s~~~l~~~R~l~  151 (449)
                      +++|  .|+++...    ..+..++++++++...|+++||+|||..++.+.++..++++    +..+++++.++++|++.
T Consensus        47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~  126 (485)
T KOG0569|consen   47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIV  126 (485)
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3556  56666553    45677789999999999999999999999988777666543    45678999999999999


Q ss_pred             HhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHH-HHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          152 SLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLAN-WLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       152 Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~-~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      |+..|...... ..++.|..+...++    ..-....++..++.+++..++. .+...  ...|++.+....++.++..+
T Consensus       127 Gl~~gl~~~~~-pmyl~E~sP~~~RG----~~g~~~~~~~~~g~ll~~~~~l~~ilGt--~~~W~~l~~~~~i~~~~~l~  199 (485)
T KOG0569|consen  127 GLACGLSTGLV-PMYLTEISPKNLRG----ALGTLLQIGVVIGILLGQVLGLPSLLGT--EDLWPYLLAFPLIPALLQLA  199 (485)
T ss_pred             HHHhHHHHHHH-HHHHhhcChhhhcc----HHHHHHHHHHHHHHHHHHHHccHHhcCC--CcchHHHHHHHHHHHHHHHH
Confidence            99998766553 45777765433322    2222233333344444444332 12211  13566666666666666654


Q ss_pred             HHHhccccCCCC------Cc---c-h-----------------------h-----hhhhhHhhhcChhHHHH---HH-HH
Q 013096          231 CVSRGWTENPKM------AF---D-D-----------------------Y-----RTSFFTYIFGDKRIWLL---VL-AQ  268 (449)
Q Consensus       231 ~i~~~~~e~~~~------~~---~-~-----------------------~-----~~~~~~~l~~~~~~~~~---~~-~~  268 (449)
                      .. ...||+|+-      ++   + +                       .     ++.+++++++|++.+.-   .+ +.
T Consensus       200 ~l-~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~  278 (485)
T KOG0569|consen  200 LL-PFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVS  278 (485)
T ss_pred             HH-hcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHH
Confidence            33 467998751      00   0 0                       0     01146788888655432   21 11


Q ss_pred             HHHHHHHHHHHHHhhhhhccC-CCc-cchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHh--
Q 013096          269 ACLQFSIALFWILWAPTLVAD-GRE-VHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIA--  344 (449)
Q Consensus       269 ~~~~~~~~~~~~~~~p~~~~~-~~~-~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~--  344 (449)
                      ...+......+..+.-.++.+ |-+ .+.-+.....+....+.+..+.++.|   |.|||..+..+..++.+...++.  
T Consensus       279 ~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid---~~gRRpLll~~~~~~~~~~~~~~~~  355 (485)
T KOG0569|consen  279 FAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID---RLGRRPLLLISLSLMAVALLLMSIA  355 (485)
T ss_pred             HHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            111111111111222222322 322 22233334445567788889999999   78888777766555443332221  


Q ss_pred             -cccchh--H---HHHHHHHHHHHHhhhh-hhHHHHHHhccCCCcchhHHHHhhHHHHHHHHH-HHHHHhHHhhhcchhH
Q 013096          345 -YDYQEI--G---ILVALFCLFHACVGLI-LPSLARLRTMYVPNELRGGMISLSLAPANAAIL-LFLLLRGFYRNIENAA  416 (449)
Q Consensus       345 -~~~~~~--~---~~~~~~~l~~~~~g~~-~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~  416 (449)
                       ...+..  +   ..+...+++.+..++. .|...-..+|++|++.|.++.++......+... .+...-.+.+..|...
T Consensus       356 ~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~  435 (485)
T KOG0569|consen  356 LFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYV  435 (485)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence             111111  1   1223333444333332 477788889999999999998876655443221 1111011122344333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013096          417 MVAFAALGLFIAAGCMHVLKRWGKQP  442 (449)
Q Consensus       417 ~~~~~~~~~l~~~~~~~~~~~~~~~~  442 (449)
                      .+.|.+...+..+..+..++|+|.+.
T Consensus       436 filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  436 FILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             hHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            34454444444555667778877543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.79  E-value=1e-15  Score=151.38  Aligned_cols=331  Identities=12%  Similarity=0.012  Sum_probs=208.8

Q ss_pred             chhhhHHHHHHHHHHHHHhh--hhhHHHHHHHHHhCCChHH-HHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH
Q 013096           52 FVPFQRNFLLLFSLASVMEG--LWSVFGEYELVYYGVAKEQ-MMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL  128 (449)
Q Consensus        52 ~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~~~g~s~~~-ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~  128 (449)
                      ++.+++.-+.++..+.+-+.  -.+...|.+.+++|+|++| .|.++++++.++++++++.|.++||+|-||++..+.+.
T Consensus        22 ~~~W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~  101 (511)
T TIGR00806        22 LKSWRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALS  101 (511)
T ss_pred             hcchhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            35666666656655554442  1222345666799999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 013096          129 HLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG  207 (449)
Q Consensus       129 ~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~  207 (449)
                      +++.++ ..+++++..+.+.|++.|++.|... +... ++..    -+|+++.+++.+....+..++.++++++++++. 
T Consensus       102 Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~s-yI~~----WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-  174 (511)
T TIGR00806       102 FVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSS-YIFS----LVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-  174 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHH----HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            998776 7788899999999999999999877 4322 3333    367777888888888788888888999888843 


Q ss_pred             ccccCCcchhHHH---HHHHHHHHHHHHHhccccCCC----------------------C-Cc--ch--hh---------
Q 013096          208 IDVKKGVVPSSTA---SVFLSILGIICVSRGWTENPK----------------------M-AF--DD--YR---------  248 (449)
Q Consensus       208 ~~~~~g~~~~f~~---~~~~~~~~~~~i~~~~~e~~~----------------------~-~~--~~--~~---------  248 (449)
                      .   +|||+-+.+   +.....+++++.+ .+|..++                      + +.  .+  .+         
T Consensus       175 s---~gWr~y~~Ln~Isl~s~~~a~~~a~-~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (511)
T TIGR00806       175 T---LGWISYSTLNIISLVFMTFSVFLAL-FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVR  250 (511)
T ss_pred             h---cCchhHHHHHHHHHHHHHHHHHHHH-hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHH
Confidence            3   378764443   3333333333332 2331111                      0 00  00  00         


Q ss_pred             -hhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCC
Q 013096          249 -TSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFR  324 (449)
Q Consensus       249 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~  324 (449)
                       ...++...+||+++...+..++...+.+- +.++...+-.+  . .+.--|.+-+...+...+.++..|++-.++.+++
T Consensus       251 l~~~~~~~y~n~~vl~WSlWwa~a~~g~~q-v~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~  329 (511)
T TIGR00806       251 MLSELVTIYRNPQLLLWSLWWVFNSAGYYL-ITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWS  329 (511)
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHhhHHHH-HHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhH
Confidence             12234456778877666655554433222 22222222211  1 1113355555555555667777887754221111


Q ss_pred             chhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHH
Q 013096          325 TEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPAN  396 (449)
Q Consensus       325 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~  396 (449)
                       +-.+.+..++-+..++++..+ +++++....++++.....+..+..+.-+++....|.-|-++|++.+..-
T Consensus       330 -~l~l~v~s~~~~gll~~m~~t-~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl  399 (511)
T TIGR00806       330 -KLLIAVVSAIQAGLVFWMSQS-HDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVAT  399 (511)
T ss_pred             -HHHHHHHHHHHHHHhhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHH
Confidence             112222223333334444444 3677777888888888888888877777777777777888887765433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.78  E-value=5.1e-18  Score=178.84  Aligned_cols=252  Identities=10%  Similarity=0.007  Sum_probs=172.0

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhc----------
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSIT----------  139 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~----------  139 (449)
                      ++..+.++.+.++|+++..+.|++.+.+.++..+++++.|+++||+||||.+.++.++++++++ .++.+          
T Consensus        50 g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~  129 (633)
T TIGR00805        50 GLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYST  129 (633)
T ss_pred             HHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccc
Confidence            4455666788889999999999999999999999999999999999999999999999988875 44432          


Q ss_pred             -----------------------------------------chhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChh
Q 013096          140 -----------------------------------------AHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQD  178 (449)
Q Consensus       140 -----------------------------------------s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~  178 (449)
                                                               .+..++++|+++|+|.+...+...+ +++|.    .+++
T Consensus       130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~-~i~d~----~~~~  204 (633)
T TIGR00805       130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS-YIDDF----AKSK  204 (633)
T ss_pred             cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch-hhhcc----CCcc
Confidence                                                     2456789999999999988777654 55555    3444


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccC-------------------CcchhHHHHHHHHHHHHHHHHhccccC
Q 013096          179 ILSDTFWLMTFFESAALIGGQVLANWLVGIDVKK-------------------GVVPSSTASVFLSILGIICVSRGWTEN  239 (449)
Q Consensus       179 ~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~-------------------g~~~~f~~~~~~~~~~~~~i~~~~~e~  239 (449)
                      +.+..++.......+++.+|+++++++.+.+.+|                   +|+..|++.+++.++..+.+. .+||+
T Consensus       205 ~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p~~  283 (633)
T TIGR00805       205 NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF-FFPKA  283 (633)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH-hCccc
Confidence            5566777777777778888888888877543111                   256667765554444333222 23332


Q ss_pred             CCC----Cc-----c-------h-----------hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--
Q 013096          240 PKM----AF-----D-------D-----------YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADG--  290 (449)
Q Consensus       240 ~~~----~~-----~-------~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--  290 (449)
                      .++    ++     +       +           .....++.+++||.++...+...+.....+.+ ..|.|.++++.  
T Consensus       284 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~-~~~lP~yl~~~~g  362 (633)
T TIGR00805       284 LPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGY-ITFLPKYLENQYG  362 (633)
T ss_pred             cCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence            211    00     0       0           00123567899999888777666655555544 55899988752  


Q ss_pred             -CccchHHHHHHHHH-HHHHhhhHHHHHhcCCCCCC--chhHHHHH
Q 013096          291 -REVHLGLIFPSLLG-ARMLGSTVFPWLISGPSSFR--TEDCLLYA  332 (449)
Q Consensus       291 -~~~~~g~i~~~~~~-~~~lg~~l~~~l~~~~~~~~--~~~~l~~~  332 (449)
                       ++...+.+.....+ +.++|..+.+++.|   |++  .++.+..+
T Consensus       363 ~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~---r~~~~~~~~~~~~  405 (633)
T TIGR00805       363 ISSAEANFLIGVVNLPAAGLGYLIGGFIMK---KFKLNVKKAAYFA  405 (633)
T ss_pred             CcHHHHHHHhhhhhhhHHHHHHhhhhheee---eecccHHHHHHHH
Confidence             34456666655544 56789999999999   454  34444433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09669 putative symporter YagG; Provisional

Probab=99.78  E-value=1.1e-15  Score=155.51  Aligned_cols=317  Identities=15%  Similarity=0.054  Sum_probs=168.7

Q ss_pred             hHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh----hCchHH-HHHHHHHHHHHHH-HHHhcc------
Q 013096           74 SVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDL----IGQKKV-CLIFFILHLFVGV-WKSITA------  140 (449)
Q Consensus        74 ~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr----~GRr~~-ll~~~~~~~~~~l-~~~~~s------  140 (449)
                      +.+++..| +++|+|+.++|.++.+.-+.-++..|+.|.++||    +||||. ++++.+..+++.. +...|+      
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            34444444 4799999999999999999999999999999999    888555 5566666666554 333332      


Q ss_pred             hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHH----HHHhHHHHHHHHHHHHHHhcccccCCcch
Q 013096          141 HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLM----TFFESAALIGGQVLANWLVGIDVKKGVVP  216 (449)
Q Consensus       141 ~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~----~~~~~~~~i~a~~lg~~l~~~~~~~g~~~  216 (449)
                      +..+++.-++.+.+.+.......+ +.+|.. ++.  ++..+..+.-    ..++.+++++++.+...+.+.....+|+.
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~a-l~~~~t-~~~--~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~  184 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCA-MPGAIT-NDP--RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY  184 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHH-hHHHhc-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            345555666666655543333233 444432 221  2222222222    22222333323233333321000136666


Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCC--cchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--CCc
Q 013096          217 SSTASVFLSILGIICVSRGWTENPKMA--FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--GRE  292 (449)
Q Consensus       217 ~f~~~~~~~~~~~~~i~~~~~e~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~  292 (449)
                      .+.+..++..++.+...+..+|...++  ++...++.++.++|||+++.+.....+....... .....+.+.+.  +.+
T Consensus       185 ~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~  263 (444)
T PRK09669        185 AMMVMGLLGVVLFFCCFFMTKERYTPEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVT-RGGATLYYVNYVLLRP  263 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEecCCCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HhhhhheeeeeecCCH
Confidence            665544444444333333445543221  1122345578899999887765443333222211 11122222222  122


Q ss_pred             cchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHH-HHhcccchhHHHHHHHHHHHHHhhhhhhHH
Q 013096          293 VHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFS-IIAYDYQEIGILVALFCLFHACVGLILPSL  371 (449)
Q Consensus       293 ~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~  371 (449)
                      ...+.......++.+++..+.+++.+   |+++++....+..+..+... ......++.+..+...++.+++.+...+..
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~---r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  340 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLG---KFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQ  340 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            22233444445667788888999998   78877766655433332222 222222333334444556778888888888


Q ss_pred             HHHHhccCCCcc-------hhHHHHhhHHHHHHH
Q 013096          372 ARLRTMYVPNEL-------RGGMISLSLAPANAA  398 (449)
Q Consensus       372 ~~~~~~~~p~~~-------rg~~~~~~~~~~~~~  398 (449)
                      .++..|..|.++       .|..+|.......++
T Consensus       341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg  374 (444)
T PRK09669        341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG  374 (444)
T ss_pred             HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence            888888876322       234556655544444

>PRK09848 glucuronide transporter; Provisional

Probab=99.77  E-value=1.6e-15  Score=154.53  Aligned_cols=319  Identities=11%  Similarity=0.052  Sum_probs=173.1

Q ss_pred             hhhhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh----CchHHH-HHHHHHHHHHHHHHH------h
Q 013096           71 GLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI----GQKKVC-LIFFILHLFVGVWKS------I  138 (449)
Q Consensus        71 ~~~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~----GRr~~l-l~~~~~~~~~~l~~~------~  138 (449)
                      ++..++++..++ +.|+++.++|.+.+...+..++..|+.|.++||.    ||||.. +++.+...+.+...+      .
T Consensus        25 ~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (448)
T PRK09848         25 AMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWS  104 (448)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            344566654444 5799999999999999999999999999999996    888865 445444444333211      1


Q ss_pred             cc--hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH----H-HhHHHHHHHHHHHHHHhccccc
Q 013096          139 TA--HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT----F-FESAALIGGQVLANWLVGIDVK  211 (449)
Q Consensus       139 ~s--~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~----~-~~~~~~i~a~~lg~~l~~~~~~  211 (449)
                      ++  ....++.-++.+++.+...+...++ ..+.. ++.  ++..+..+.-.    . ....+..++|.++....... .
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~~~~~-~~~--~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~  179 (448)
T PRK09848        105 HSSKVVYAYLTYMGLGLCYSLVNIPYGSL-ATAMT-QQP--QSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-V  179 (448)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccHhhh-hhhhc-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-h
Confidence            11  2223444566677776655444442 23321 221  11112211111    1 11223344555554321110 0


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhccccCCCCCc-chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-
Q 013096          212 KGVVPSSTASVFLSILGIICVSRGWTENPKMAF-DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-  289 (449)
Q Consensus       212 ~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  289 (449)
                      .+|.....+..++..+..++..+..||+.++++ +...++.++.+++||+++...+...+.......+ ..+.|.+.++ 
T Consensus       180 ~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  258 (448)
T PRK09848        180 SVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAV-SASSLFYVRYV  258 (448)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-hhhheeeEeee
Confidence            011111111122222222333344566543321 1222345788999999887766555554443333 3346666654 


Q ss_pred             -CCccchHHH-HHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHhhh
Q 013096          290 -GREVHLGLI-FPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY-QEIGILVALFCLFHACVGL  366 (449)
Q Consensus       290 -~~~~~~g~i-~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~g~  366 (449)
                       +.+...+.+ .....++.+++..+.+++.+   |+++++.+..+..+..++.....+.+ ++.+.......+.+++.++
T Consensus       259 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~  335 (448)
T PRK09848        259 LNDTGLFTVLVLVQNLVGTVASAPLVPGMVA---RIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV  335 (448)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence             222223333 33334567788899999998   78888877766555444433333322 2333334445566778888


Q ss_pred             hhhHHHHHHhccCCCc-------chhHHHHhhHHHHHHH
Q 013096          367 ILPSLARLRTMYVPNE-------LRGGMISLSLAPANAA  398 (449)
Q Consensus       367 ~~p~~~~~~~~~~p~~-------~rg~~~~~~~~~~~~~  398 (449)
                      ..+...++.++..|.+       .+|..+|+.+....++
T Consensus       336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg  374 (448)
T PRK09848        336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG  374 (448)
T ss_pred             HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence            8888888888877654       3477777776655554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.77  E-value=4.4e-16  Score=157.67  Aligned_cols=231  Identities=14%  Similarity=0.059  Sum_probs=171.1

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH-HHHHhcchhHHHHHHHHHHhHHHHhhh
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG-VWKSITAHPSVWVANICLSLASSIFSF  160 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~-l~~~~~s~~~l~~~R~l~Glg~~~~~~  160 (449)
                      +|.+....|.+.+-+++++++.++++++|.|.||++-.+.+....+.+++.+ +....+|++.+++.|++.|+..+..+|
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP  153 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWP  153 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccch
Confidence            5677778889999999999999999999999999998888888888877655 455589999999999999999999998


Q ss_pred             hhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc---ccCCcchhHHHHHHHHHHHHHHHHhccc
Q 013096          161 NFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID---VKKGVVPSSTASVFLSILGIICVSRGWT  237 (449)
Q Consensus       161 ~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~---~~~g~~~~f~~~~~~~~~~~~~i~~~~~  237 (449)
                      .... ++.    +-+++++++..++.+...++++.+.|++++..+....   ...|||+.|++-.++.++..+++++.+|
T Consensus       154 ~~~~-~lg----~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  154 GVVA-ILG----NWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             HHHH-HHH----hhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence            8654 333    2356667777888877777777788888777643211   1248999999877666665555666667


Q ss_pred             cCCCC------Ccc-----h------------hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC---C
Q 013096          238 ENPKM------AFD-----D------------YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADG---R  291 (449)
Q Consensus       238 e~~~~------~~~-----~------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~  291 (449)
                      +++.+      +++     +            .++..+++.++|++++.+.+..++.....+.+ .+|+|.++.++   +
T Consensus       229 ~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~-~~~lpl~l~~~~~~s  307 (495)
T KOG2533|consen  229 DNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGF-SYWLPLYLKSNGGYS  307 (495)
T ss_pred             CChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccH-HHHHHHHHHcCCCcC
Confidence            66541      110     0            11234678899999999988887777665554 66899998762   2


Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhc
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLIS  318 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~  318 (449)
                      ..+...+-....++.++|..+++.++|
T Consensus       308 ~~~a~~ls~~~~~~g~v~~i~ag~lsd  334 (495)
T KOG2533|consen  308 ELQANLLSTPYDVGGIVGLILAGYLSD  334 (495)
T ss_pred             hHHhccccchHHhhhHHHHHHHHHHHH
Confidence            334444445556778889999999999

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.76  E-value=4.8e-15  Score=149.83  Aligned_cols=364  Identities=11%  Similarity=0.083  Sum_probs=197.1

Q ss_pred             HHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhh----hhCchHHHHHHHHHHHH-HHH-HHHhcch
Q 013096           68 VMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISD----LIGQKKVCLIFFILHLF-VGV-WKSITAH  141 (449)
Q Consensus        68 ~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laD----r~GRr~~ll~~~~~~~~-~~l-~~~~~s~  141 (449)
                      +...++.++++++.+++|.++.+++.+..++.+...+.+|+.|.++|    |+||||.++....+..+ +.+ ..+++++
T Consensus        18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence            44456778887877899999999999999999999999999999999    59999999876444433 333 4455554


Q ss_pred             hHHH------------HHHHHHHh-----HHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013096          142 PSVW------------VANICLSL-----ASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANW  204 (449)
Q Consensus       142 ~~l~------------~~R~l~Gl-----g~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~  204 (449)
                      ..++            +.+.+.|+     +.....+...+ ++.|..+.+  +++...+++..+...+++.++++.+|+.
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rA-LiaDl~p~~--~~~~~~a~~~~~~~~~lG~ilg~~~g~~  174 (477)
T TIGR01301        98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRA-FLADLTGGD--ARRTRIANAYFSFFMAIGNVLGYAAGAY  174 (477)
T ss_pred             hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3221            12333333     44433333333 444432211  1123345666566666777788887775


Q ss_pred             H--hcccc----------cCCcchhHHHHHHHHHHHHHHHHhccccCCCC-Cc----c------h-hhhhhhHhhhcC--
Q 013096          205 L--VGIDV----------KKGVVPSSTASVFLSILGIICVSRGWTENPKM-AF----D------D-YRTSFFTYIFGD--  258 (449)
Q Consensus       205 l--~~~~~----------~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~-~~----~------~-~~~~~~~~l~~~--  258 (449)
                      .  .+..+          ..+.+..|.++++..+++.++.....||.+.. ++    +      + ..+..+++++++  
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  254 (477)
T TIGR01301       175 SGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFK  254 (477)
T ss_pred             HhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHH
Confidence            4  11100          12557789888887777766666667776531 10    0      0 011223343332  


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhhhhhccC---CC---cc------chHHH-HHHHHHHHHHhhhHHHHHhcCCCC
Q 013096          259 ---KRIWLLVLAQACLQFSIALFWILWAPTLVAD---GR---EV------HLGLI-FPSLLGARMLGSTVFPWLISGPSS  322 (449)
Q Consensus       259 ---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---~~------~~g~i-~~~~~~~~~lg~~l~~~l~~~~~~  322 (449)
                         |..+.+.+++++.-.+.+.+..+.++.+-++   ++   +.      ..|-. ...+.+...+.+.+.+++.+   +
T Consensus       255 ~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~---~  331 (477)
T TIGR01301       255 YLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR---G  331 (477)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence               4556677777766656665554444433221   11   10      11211 12223333455667777777   6


Q ss_pred             CCc-hhHHHHHHHHHHHHHHHHhcccc-----------------h---hHHHHHHHHHHHHHhhhhhhHHHHHHhccCCC
Q 013096          323 FRT-EDCLLYAFVVLGFVFSIIAYDYQ-----------------E---IGILVALFCLFHACVGLILPSLARLRTMYVPN  381 (449)
Q Consensus       323 ~~~-~~~l~~~~~~~~~~l~~~~~~~~-----------------~---~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~  381 (449)
                      ++. ++....+.++.++++....+...                 +   .+..+..+.+.|+..+..+..=.++.++..|+
T Consensus       332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~  411 (477)
T TIGR01301       332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN  411 (477)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence            764 34434554455554443321110                 0   12334455555655555555556777888885


Q ss_pred             c--chhHHHHhhHHHHHHHHH-HHHHHhHHhhhcc--hhHHHHHHHHHHHHHHH-HHHHHHH
Q 013096          382 E--LRGGMISLSLAPANAAIL-LFLLLRGFYRNIE--NAAMVAFAALGLFIAAG-CMHVLKR  437 (449)
Q Consensus       382 ~--~rg~~~~~~~~~~~~~~~-~~~~~g~~~~~~~--~~~~~~~~~~~~l~~~~-~~~~~~~  437 (449)
                      +  ..|..+|+.++...+.-+ ..+..|.+.+-.+  ....+.++.+..+++.. +...++|
T Consensus       412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            4  447888988876665422 2222233222222  33344455444444433 3333444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.76  E-value=6.3e-16  Score=157.97  Aligned_cols=317  Identities=9%  Similarity=-0.065  Sum_probs=188.6

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhC-----chHHHHHHHHHHH-HHHH-HHHhcchhHH-HHHHH
Q 013096           78 EYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIG-----QKKVCLIFFILHL-FVGV-WKSITAHPSV-WVANI  149 (449)
Q Consensus        78 ~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~G-----Rr~~ll~~~~~~~-~~~l-~~~~~s~~~l-~~~R~  149 (449)
                      +.+.+++|+|+++++...+...++..+ .+++|+++||++     ||+.++++.++.+ +... .+..++.... .+.++
T Consensus        50 ~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~  128 (468)
T TIGR00788        50 PMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIF  128 (468)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            444557899999999888888888877 667999999998     7777777766653 2221 2223444334 44788


Q ss_pred             HHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          150 CLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       150 l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      +.+++.+..-.+.++.++....  + +++..+...+........+.++++.+++.+.+..   +|+..|.+.+.+.++..
T Consensus       129 l~~~~~a~~dv~~da~~~e~~~--~-~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~---~~~~~f~~~a~l~ll~~  202 (468)
T TIGR00788       129 LAALAKALYDVLVDSLYSERIR--E-SPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT---LTRILFLITAALLLLQL  202 (468)
T ss_pred             HHHHHHHHHHHhHHHHHhhhhh--c-CCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHH
Confidence            9999988877777775543322  1 1122222222111112345667778888877654   89999988666555543


Q ss_pred             HHHHhccccCCC---CC-cch--------------hhh---hhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh-c
Q 013096          230 ICVSRGWTENPK---MA-FDD--------------YRT---SFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTL-V  287 (449)
Q Consensus       230 ~~i~~~~~e~~~---~~-~~~--------------~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~  287 (449)
                      + ....++|++.   ++ .++              ..+   ...+..+++|+++...+...+.+......   -.+.+ .
T Consensus       203 ~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~---~~~~f~~  278 (468)
T TIGR00788       203 F-VSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGA---SGSVFCA  278 (468)
T ss_pred             H-HHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCC---CceeEEE
Confidence            3 3334677531   11 000              011   12444567777665333222210000000   01111 1


Q ss_pred             -cC---CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcc---c------chhHHHH
Q 013096          288 -AD---GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD---Y------QEIGILV  354 (449)
Q Consensus       288 -~~---~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~---~------~~~~~~~  354 (449)
                       .+   .++...|......+++.++|..+.+++.+   |++.++.+..+.++.+++.......   .      ...+...
T Consensus       279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~---~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~  355 (468)
T TIGR00788       279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLK---TFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVL  355 (468)
T ss_pred             EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeee
Confidence             11   24566888888888899999999999987   7888887776655544433211100   0      1111122


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHH
Q 013096          355 ALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGF  408 (449)
Q Consensus       355 ~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~  408 (449)
                      ....+.+++.++.+.....+.++..|++.+|+.+++..+..+++...+...|++
T Consensus       356 ~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~  409 (468)
T TIGR00788       356 GDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL  409 (468)
T ss_pred             ehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence            233445667777777778889999999999999999988888875555554443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.76  E-value=1.6e-15  Score=157.51  Aligned_cols=340  Identities=14%  Similarity=0.021  Sum_probs=190.0

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhh
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSF  160 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~  160 (449)
                      +.+..+........+.++++.+++..++|+++||+|||++++++.++..+..+ +++++|++.+.+.|+++|++.+....
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            45566677777788889999999999999999999999999999999998776 89999999999999999999987666


Q ss_pred             hhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCC
Q 013096          161 NFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP  240 (449)
Q Consensus       161 ~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~  240 (449)
                      +... ++.|..    ++++.+.+... ......++..++..++++.+     +||+.+++......+.+++ +...||++
T Consensus       191 ~~~~-~~~E~~----~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  191 VGFG-LVAEIV----SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             HhHh-hheeec----CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            6433 344542    22233333333 22333445667777777765     7899999877666655443 33445765


Q ss_pred             CC------C-c-----ch--------hh------h---------------hhhHhhhcChhHHHHHHHHHHHHHHHHHHH
Q 013096          241 KM------A-F-----DD--------YR------T---------------SFFTYIFGDKRIWLLVLAQACLQFSIALFW  279 (449)
Q Consensus       241 ~~------~-~-----~~--------~~------~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  279 (449)
                      +-      . +     ++        ..      .               ..+..+++.++.....+... +....+...
T Consensus       259 rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-~~~~~~~~~  337 (521)
T KOG0255|consen  259 RWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLL-FIWFVFSLV  337 (521)
T ss_pred             HHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHH-HHHHHHhHH
Confidence            31      0 0     00        00      0               01122333332222111111 111111110


Q ss_pred             HHhhhhhccCCCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhH--HHHHHH
Q 013096          280 ILWAPTLVADGREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIG--ILVALF  357 (449)
Q Consensus       280 ~~~~p~~~~~~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~~  357 (449)
                      ..-.+... .+.+......+...+.....+....+...+   +++++.....+..+.+++++..........  ......
T Consensus       338 y~gl~~~~-~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~---~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
T KOG0255|consen  338 YYGLSLNV-SGLGGNIYLNFTLSGLVELPAYFRNGLLLP---EFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILP  413 (521)
T ss_pred             HHhhhhhh-hhcCchHHHHHHHHHHHHhhHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            00011111 111222333333333333444455566777   566666666665565655554443322111  222222


Q ss_pred             HHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhc--chhHHHHHHHHHHHHHHHHHHHH
Q 013096          358 CLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNI--ENAAMVAFAALGLFIAAGCMHVL  435 (449)
Q Consensus       358 ~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~  435 (449)
                      .+..++.+..+.....+..|++|+..|..+.+.......++.+.++..-.+....  ..+... ++..+.+....+..++
T Consensus       414 ~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~l  492 (521)
T KOG0255|consen  414 LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL-FGWLALLLGLLSLLLL  492 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHhcC
Confidence            3334455555556677788999999999998887776666544443322122121  122222 4555555555554555


Q ss_pred             HHhh
Q 013096          436 KRWG  439 (449)
Q Consensus       436 ~~~~  439 (449)
                      ++.+
T Consensus       493 pet~  496 (521)
T KOG0255|consen  493 PETK  496 (521)
T ss_pred             cccC
Confidence            5544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.75  E-value=1.5e-15  Score=157.21  Aligned_cols=296  Identities=18%  Similarity=0.140  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHH
Q 013096           90 QMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAI  168 (449)
Q Consensus        90 ~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~  168 (449)
                      +.+++.+...++..+++++.|+++|++|||+.++.+.+++.++.+ ++.++|+++++++|+++|+|.|...... ..+++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~-piy~s  168 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLA-PVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcc-hhhHh
Confidence            457888999999999999999999999999999999999999886 8899999999999999999999866443 34677


Q ss_pred             HHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCC--C---
Q 013096          169 EHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKM--A---  243 (449)
Q Consensus       169 ~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~--~---  243 (449)
                      |..+...    .+...+..+.....+..++ .+.+...+.. .++||.++.+..+..++..+. ....||+++.  +   
T Consensus       169 Eiap~~~----RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~-~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~  241 (513)
T KOG0254|consen  169 EIAPAHI----RGTLVSLYQLFITIGILLG-YCINYGTSKV-YAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGR  241 (513)
T ss_pred             hcCChhh----hHHHHHHHHHHHHHHHHHH-HHHhhhhccC-CccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCC
Confidence            7643322    2223333333322333333 2333333221 148998888877666655544 4456787642  0   


Q ss_pred             -c--ch--------------hh----h------------h-hhHhhhc--ChhHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 013096          244 -F--DD--------------YR----T------------S-FFTYIFG--DKRIWL-LVLAQACLQFSIALFWILWAPTL  286 (449)
Q Consensus       244 -~--~~--------------~~----~------------~-~~~~l~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~  286 (449)
                       +  ++              ..    +            + .++++++  .++... ....+.+.+...+..+..+.+.+
T Consensus       242 ~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i  321 (513)
T KOG0254|consen  242 LEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI  321 (513)
T ss_pred             hHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence             0  00              00    0            0 0122222  111111 12223333333333334456666


Q ss_pred             ccC-CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhc--cc--c-------hhHHHH
Q 013096          287 VAD-GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAY--DY--Q-------EIGILV  354 (449)
Q Consensus       287 ~~~-~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~--~~--~-------~~~~~~  354 (449)
                      ++. +.+.+.........+...++..+...+.|   |+++|+.+..+...+.+++.+...  ..  .       ..+..+
T Consensus       322 f~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd---~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (513)
T KOG0254|consen  322 FKSAGLKSDTFLASIILGVVNFLGTLVATYLVD---RFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAI  398 (513)
T ss_pred             HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH---HhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHH
Confidence            553 22211111122233445667777788999   788888777666555544433221  10  0       111222


Q ss_pred             HHHHHHHHHhhh-hhhHHHHHHhccCCCcchhHHHHhhHHHHH
Q 013096          355 ALFCLFHACVGL-ILPSLARLRTMYVPNELRGGMISLSLAPAN  396 (449)
Q Consensus       355 ~~~~l~~~~~g~-~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~  396 (449)
                      ...+++...... ..|.-+.+.+|.+|.+.|+++.++......
T Consensus       399 ~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~  441 (513)
T KOG0254|consen  399 VFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNW  441 (513)
T ss_pred             HHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHH
Confidence            222333222222 235555677999999999998877654433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.74  E-value=4.5e-15  Score=151.68  Aligned_cols=347  Identities=12%  Similarity=0.100  Sum_probs=223.5

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHH-HHHHHh
Q 013096           76 FGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVA-NICLSL  153 (449)
Q Consensus        76 ~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~-R~l~Gl  153 (449)
                      +.+.+.++++.+.+|++++.++......+.+|+.+.+.||+|.|++.+.+.++..++.+ ..+++++|++++. -++.|+
T Consensus        68 ~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~  147 (509)
T KOG2504|consen   68 LFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGL  147 (509)
T ss_pred             hHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence            44566679999999999999999989999999999999999999999999999999887 8889999888766 488889


Q ss_pred             HHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHH
Q 013096          154 ASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVS  233 (449)
Q Consensus       154 g~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~  233 (449)
                      |.|..+..... ++...     -+++.+.+.+....+.+++.++=|.+..++.+.+   |||..+++-..+.+-+.....
T Consensus       148 G~~~~~~paiv-iv~~Y-----F~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~---G~r~~~l~~~~~~l~~~~~~~  218 (509)
T KOG2504|consen  148 GLGLIYLPAVV-ILGTY-----FEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY---GWRGALLIFGGISLNVLVAGA  218 (509)
T ss_pred             cchhhhcchhh-hhhhH-----hHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh---CcHHHHHHHHHHHHHHHHHHH
Confidence            98876654322 33322     2233455666666677777777777888888876   899888865444333322222


Q ss_pred             hccc--------------------cCC---------CC---Ccc------------h--h----hhhhh----HhhhcCh
Q 013096          234 RGWT--------------------ENP---------KM---AFD------------D--Y----RTSFF----TYIFGDK  259 (449)
Q Consensus       234 ~~~~--------------------e~~---------~~---~~~------------~--~----~~~~~----~~l~~~~  259 (449)
                      ..-|                    |..         .+   ..+            +  .    .+...    .++++||
T Consensus       219 ~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~  298 (509)
T KOG2504|consen  219 LLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP  298 (509)
T ss_pred             HcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCc
Confidence            2222                    000         00   000            0  0    01112    3678888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchh--HHHHHHHH
Q 013096          260 RIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTED--CLLYAFVV  335 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~--~l~~~~~~  335 (449)
                      .++.+.+...+.....+.. ...+|.+..+ + ++.+.+...+..++..++|.++.|++.|+   ...++  ...++.++
T Consensus       299 ~fl~~~~~~~~~~~g~~~p-~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~---~~~~~~~~~~~~ll~  374 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVP-FVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADK---PGIRALVLFLLTLLI  374 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCc---cccchHHHHHHHHHH
Confidence            8888777665555544443 3346666543 3 44556777788888999999999999994   33222  22334444


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHH-HHHHHhHHhhhcc-
Q 013096          336 LGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAIL-LFLLLRGFYRNIE-  413 (449)
Q Consensus       336 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~-~~~~~g~~~~~~~-  413 (449)
                      .++......... +.+.++...++++++.|...........+..+.|.-..++|+......++.+ ++++.|.+.+..+ 
T Consensus       375 ~gl~~~~~p~~~-~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~  453 (509)
T KOG2504|consen  375 AGLARLFLPFAT-TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN  453 (509)
T ss_pred             HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC
Confidence            454443333332 2233344445567777766655556778899999888999998888777654 4455565555544 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 013096          414 NAAMVAFAALGLFIAAGCMHVLK  436 (449)
Q Consensus       414 ~~~~~~~~~~~~l~~~~~~~~~~  436 (449)
                      +...+.++.+..+++..++...+
T Consensus       454 Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  454 YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeehhhcChHHHHHHHHHHHhH
Confidence            55555555555554444444333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.69  E-value=3.2e-16  Score=151.55  Aligned_cols=302  Identities=15%  Similarity=0.110  Sum_probs=163.5

Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh-----c--chhHHHHHHHHHHhHHHH
Q 013096           86 VAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI-----T--AHPSVWVANICLSLASSI  157 (449)
Q Consensus        86 ~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~-----~--s~~~l~~~R~l~Glg~~~  157 (449)
                      .++.--+.+..+.+++..++|+++|+++||+|||+++...+++..++++ |++.     +  -..+|...|++.|+|.|.
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG  160 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG  160 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence            3444456778888899999999999999999999999999999888775 5543     1  257899999999999999


Q ss_pred             hhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc--------cCCcchhHHHHHHHHHHHH
Q 013096          158 FSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV--------KKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       158 ~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~--------~~g~~~~f~~~~~~~~~~~  229 (449)
                      .+|...+ ..+|......++..++..++.-..+...+.+++-++..-.-....        +.=||..|.+++++.++++
T Consensus       161 DYPlSAt-I~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l  239 (538)
T KOG0252|consen  161 DYPLSAT-IMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL  239 (538)
T ss_pred             CCcchHH-HhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999754 556663322233333434443333332333333333322211110        1238888888888776653


Q ss_pred             HHHHhccccCCCCC-----c-----chhh--------------------hhh---hHhhhcC---hhHHHHHHHHHHHHH
Q 013096          230 ICVSRGWTENPKMA-----F-----DDYR--------------------TSF---FTYIFGD---KRIWLLVLAQACLQF  273 (449)
Q Consensus       230 ~~i~~~~~e~~~~~-----~-----~~~~--------------------~~~---~~~l~~~---~~~~~~~~~~~~~~~  273 (449)
                       ..+..+||+++-+     +     ++.+                    ++.   +...+..   ++.+..+..+++...
T Consensus       240 -y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDi  318 (538)
T KOG0252|consen  240 -YFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDI  318 (538)
T ss_pred             -HhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             3344678875311     0     0000                    000   1111111   222223333333333


Q ss_pred             HHHHHHHHhhhhhccC-C---Cccch------HHHHHHHH-HHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 013096          274 SIALFWILWAPTLVAD-G---REVHL------GLIFPSLL-GARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSI  342 (449)
Q Consensus       274 ~~~~~~~~~~p~~~~~-~---~~~~~------g~i~~~~~-~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~  342 (449)
                      +.|.. .+.+..++++ +   .....      ........ .+.+.|.++...+.|   +.+++.+...++.++.+..++
T Consensus       319 afy~~-nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id---~iGRk~iq~~GF~~~~i~~~~  394 (538)
T KOG0252|consen  319 AFYGQ-NLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFID---IIGRKYIQLMGFFIMTIFFFV  394 (538)
T ss_pred             hhhcc-ccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEee---hhhhHHHHHhhHHHHHHHHHH
Confidence            33322 1112222221 1   01111      00001111 223346667777888   788888888888888777766


Q ss_pred             Hhcccch---hHHHHHHHHHHHHHhhhhhhHHH--HHHhccCCCcchhHHHHhhHHH
Q 013096          343 IAYDYQE---IGILVALFCLFHACVGLILPSLA--RLRTMYVPNELRGGMISLSLAP  394 (449)
Q Consensus       343 ~~~~~~~---~~~~~~~~~l~~~~~g~~~p~~~--~~~~~~~p~~~rg~~~~~~~~~  394 (449)
                      .+..++.   ....++...+..+ .+-.-|+.+  ...+|.+|++.||+..|+.-..
T Consensus       395 ~~~~y~~~~~~~Gf~v~y~l~~f-f~NFGPn~ttfivpaE~FParvR~t~hGIsAA~  450 (538)
T KOG0252|consen  395 IAGPYNQLENTIGFVVLYSLTFF-FGNFGPNATTFIVPAEIFPARVRSTCHGISAAS  450 (538)
T ss_pred             HcCCcccccccCceeehHHHHHH-HHhcCCCceeEEeehhhchHHHhhhhhhHHHHh
Confidence            6654431   1111111111111 111223332  3447999999999998876543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.69  E-value=9.1e-14  Score=142.73  Aligned_cols=306  Identities=15%  Similarity=0.122  Sum_probs=173.3

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHH
Q 013096           74 SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLS  152 (449)
Q Consensus        74 ~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~G  152 (449)
                      ...++.+++|.|-++ ...++.....++..+..|+.|+++|.+|||.+++.+.++..++++ ++-++|...++.+-.+.|
T Consensus        64 a~~l~~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G  142 (599)
T PF06609_consen   64 ASILPYINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG  142 (599)
T ss_pred             HHHHHHHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH
Confidence            345678889999764 446677777788888899999999999999999999999999987 889999999999999999


Q ss_pred             hHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHH
Q 013096          153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICV  232 (449)
Q Consensus       153 lg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i  232 (449)
                      +|.|.....  ...++|..++..+    .................+|.++..+..+   .+|||.|++.++...++.+..
T Consensus       143 vgaG~~~~~--~~~isEl~p~k~R----~~~~~~~~~~~i~~~~~~~~ia~~~~~~---~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  143 VGAGVQELA--ALAISELVPNKWR----GLGLAIASIPFIITTWISPLIAQLFAAH---SGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             HhhHHHHHH--HHHHHHhcccchh----hhHhHHHHHHHHhhhcccHHHHHHhccC---CCcchHHHHHHHHHHHHHHHH
Confidence            998866533  2345666433221    1112222211111222456666665543   389999998766544443322


Q ss_pred             H-hccccCC----CC--Ccch-------------------------------h------------------------h--
Q 013096          233 S-RGWTENP----KM--AFDD-------------------------------Y------------------------R--  248 (449)
Q Consensus       233 ~-~~~~e~~----~~--~~~~-------------------------------~------------------------~--  248 (449)
                      . +..|+++    ++  ++++                               +                        +  
T Consensus       214 ~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~  293 (599)
T PF06609_consen  214 FFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWF  293 (599)
T ss_pred             HHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhh
Confidence            2 2223221    11  1110                               0                        0  


Q ss_pred             ---hhhh--HhhhcChhHHHHHHHHHHHHHHHH-HHHHHhhhhhcc-CC-Cc---cchHHHHHHHHHHHHHhhhHHHHHh
Q 013096          249 ---TSFF--TYIFGDKRIWLLVLAQACLQFSIA-LFWILWAPTLVA-DG-RE---VHLGLIFPSLLGARMLGSTVFPWLI  317 (449)
Q Consensus       249 ---~~~~--~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~-~~-~~---~~~g~i~~~~~~~~~lg~~l~~~l~  317 (449)
                         ++++  .+++||+|.+...++..+..+..| .....|...... .+ +.   ...++.......+...|+.+.+.+.
T Consensus       294 ~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~  373 (599)
T PF06609_consen  294 GAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLF  373 (599)
T ss_pred             ccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHH
Confidence               0111  346676555544433333333333 222334332221 11 11   1345555555667778888888877


Q ss_pred             cCCCCCCchhHH-HHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhH
Q 013096          318 SGPSSFRTEDCL-LYAFVVLGFVFSII-AYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSL  392 (449)
Q Consensus       318 ~~~~~~~~~~~l-~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~  392 (449)
                      .   +.++.|.. .++...+.+....+ ....++....+...++.+++.|..........+-..|+|+-|++.|+..
T Consensus       374 ~---~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~  447 (599)
T PF06609_consen  374 S---KIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTG  447 (599)
T ss_pred             H---HccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHH
Confidence            6   34443433 33333222211111 2222222222333334566676665555556667789999888876543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.68  E-value=1.4e-14  Score=146.80  Aligned_cols=313  Identities=15%  Similarity=0.113  Sum_probs=179.6

Q ss_pred             HHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhh----hhCchHHHH-HHHHHHHHHHH-HHHh-c-------c
Q 013096           76 FGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISD----LIGQKKVCL-IFFILHLFVGV-WKSI-T-------A  140 (449)
Q Consensus        76 ~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laD----r~GRr~~ll-~~~~~~~~~~l-~~~~-~-------s  140 (449)
                      ++...|. ..|+++..+|.+..++-+..++..|+.|.++|    |+||||..+ ++.+..+++.. +... |       .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4444454 56999999999999999999999999999999    899888865 56666666654 3222 2       2


Q ss_pred             hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc---c-CCcch
Q 013096          141 HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV---K-KGVVP  216 (449)
Q Consensus       141 ~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~---~-~g~~~  216 (449)
                      ...+.+.-++..++.........+ +.+|.. ++  .++..+..+.-.....++.++...+...+.+...   . .+|++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~a-l~~~lt-~~--~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~  178 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNA-LIPELT-PD--PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRW  178 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhh-cCcccc-cc--HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHH
Confidence            233455555556665544333233 223321 11  1122233333222222223222333333322221   1 15777


Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCC-C-c--chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C
Q 013096          217 SSTASVFLSILGIICVSRGWTENPKM-A-F--DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G  290 (449)
Q Consensus       217 ~f~~~~~~~~~~~~~i~~~~~e~~~~-~-~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~  290 (449)
                      ...+.+++..++.++..+..||.+++ + +  +...++.++.+++||+++.+.....+........ ....+.+.++  +
T Consensus       179 ~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~-~~~~~y~~~~vl~  257 (428)
T PF13347_consen  179 MALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALM-NTFLPYYFTYVLG  257 (428)
T ss_pred             HHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHhc
Confidence            77666666555555555566772222 1 1  1122355788999998887665554433322211 1122333332  2


Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHhhhhhh
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY-QEIGILVALFCLFHACVGLILP  369 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~g~~~p  369 (449)
                      ++...+.......++.+++..+.+++.+   |++++|....+..+.+++.....+.+ .+.+...+..++.+++.+..++
T Consensus       258 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~---r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~  334 (428)
T PF13347_consen  258 NEGLISIFMLIFFVASIVGSPLWGRLSK---RFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFV  334 (428)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHH---HccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccc
Confidence            3334555556667788899999999999   78888877766655555444333332 3444555566677888888888


Q ss_pred             HHHHHHhccCCCc-------chhHHHHhhHHHHH
Q 013096          370 SLARLRTMYVPNE-------LRGGMISLSLAPAN  396 (449)
Q Consensus       370 ~~~~~~~~~~p~~-------~rg~~~~~~~~~~~  396 (449)
                      ...++.+|..+.+       ..|..+|.......
T Consensus       335 ~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k  368 (428)
T PF13347_consen  335 IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIK  368 (428)
T ss_pred             ccccccccchhhHHHhcCCCchHHHHHhhhhhhH
Confidence            8888888887743       23556666555433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.68  E-value=2.4e-13  Score=139.44  Aligned_cols=320  Identities=13%  Similarity=0.027  Sum_probs=166.9

Q ss_pred             hhhhhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhh----hhCchHH-HHHHHHHHHHHHH-HHHhcc--
Q 013096           70 EGLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISD----LIGQKKV-CLIFFILHLFVGV-WKSITA--  140 (449)
Q Consensus        70 ~~~~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laD----r~GRr~~-ll~~~~~~~~~~l-~~~~~s--  140 (449)
                      ..+..++++..|. ..|+++.++|.++.+.-+.-++..|+.|.++|    |+||||. ++++.+..+++.. +...++  
T Consensus        22 ~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~  101 (473)
T PRK10429         22 IGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFE  101 (473)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCC
Confidence            3345666666565 56999999999999999999999999999999    6699555 5556666666644 322221  


Q ss_pred             ----hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc----cC
Q 013096          141 ----HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV----KK  212 (449)
Q Consensus       141 ----~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~----~~  212 (449)
                          +..+++.-++.+++.+.......+ +.+|.. ++  .++..+..+.-.....++..+.+.+...+.+...    ..
T Consensus       102 ~~~~~~~~~~~~~l~~~~~t~~~ip~~a-l~~~lt-~~--~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~  177 (473)
T PRK10429        102 GTAQYVFVCVTYILWGMTYTIMDIPFWS-LVPTLT-LD--KREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGF  177 (473)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcchHHh-hhHHhC-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence                334555555666665554443333 334432 12  1223333333222222222222222211111110    11


Q ss_pred             CcchhHHHHHHHHHHHHHHHHhccccCCCCC-------cchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 013096          213 GVVPSSTASVFLSILGIICVSRGWTENPKMA-------FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPT  285 (449)
Q Consensus       213 g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  285 (449)
                      +|+....+.++..+++.+...+..||.+.++       ++...++.++.+++||.++.+.....+.....+.. ....+.
T Consensus       178 g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~-~~~~~y  256 (473)
T PRK10429        178 GFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNII-NGFAIY  256 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-hhheee
Confidence            3444444433333333333444456643211       11122445677889988877655444443322222 223343


Q ss_pred             hccC--CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHh---c-ccchhHHHHHHHHH
Q 013096          286 LVAD--GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIA---Y-DYQEIGILVALFCL  359 (449)
Q Consensus       286 ~~~~--~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~---~-~~~~~~~~~~~~~l  359 (449)
                      +.+.  +++...+.......++.+++..+.+++.|   |+++++.+..+..+..++.....   . ..++.+..++...+
T Consensus       257 ~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~---r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l  333 (473)
T PRK10429        257 YFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVK---SLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGIL  333 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            4332  22333455555555777888899999998   78888876655433222221111   1 22233333344445


Q ss_pred             HHHHhhhhhhHHHHHHhccCCCc-----ch--hHHHHhhHHHHHH
Q 013096          360 FHACVGLILPSLARLRTMYVPNE-----LR--GGMISLSLAPANA  397 (449)
Q Consensus       360 ~~~~~g~~~p~~~~~~~~~~p~~-----~r--g~~~~~~~~~~~~  397 (449)
                      .+++.+..++...++.+|..|.+     .|  |..+|.......+
T Consensus       334 ~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~  378 (473)
T PRK10429        334 LNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG  378 (473)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence            66777777777778888886632     22  3355655544333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.67  E-value=2.1e-12  Score=131.34  Aligned_cols=141  Identities=12%  Similarity=0.037  Sum_probs=94.4

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHHHHHHHHHHHHH-HHHhc-chhHHHHHHHHHHhHHHHh
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCLIFFILHLFVGV-WKSIT-AHPSVWVANICLSLASSIF  158 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll~~~~~~~~~~l-~~~~~-s~~~l~~~R~l~Glg~~~~  158 (449)
                      +++|+++.+.+.+...+.....++.+++|+++||+ ||||+++++.++..++.+ +...+ +...+.+.-.+.++|.|..
T Consensus        38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~  117 (493)
T PRK15462         38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLF  117 (493)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccc
Confidence            56899999999888888888888889999999999 999999999988887764 44332 2233444444455555554


Q ss_pred             hhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          159 SFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       159 ~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      .+...+ ++.|.-+.+.+  +....++....+..++..++|.+.+++.+.+   ||++.|.+.++..+++
T Consensus       118 ~~~~~a-lv~elfp~~~~--~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~---Gw~~~F~iaaigm~l~  181 (493)
T PRK15462        118 KSNVSC-LLGELYEPTDP--RRDGGFSLMYAAGNVGSIIAPIACGYAQEEY---SWAMGFGLAAVGMIAG  181 (493)
T ss_pred             cccHHH-HHHHHCCCCCc--cccceehHHHHHHHHHHHHHHHHHHHHHhhh---ChHHHHHHHHHHHHHH
Confidence            444333 45554221101  1233455544455567788999999987755   8999998765443333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.65  E-value=7.6e-21  Score=193.65  Aligned_cols=350  Identities=15%  Similarity=0.159  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhc---chhHHHHHHHHHHhHHHHhhhhhHH
Q 013096           89 EQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSIT---AHPSVWVANICLSLASSIFSFNFET  164 (449)
Q Consensus        89 ~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~---s~~~l~~~R~l~Glg~~~~~~~~~a  164 (449)
                      .+.++..+..+++..+++++.|.++||+|||++++.+..+..++++ ..+++   |++.+.++|+++|++.|...+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567788899999999999999999999999999999999988876 77888   9999999999999999987766543


Q ss_pred             HHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCC--
Q 013096          165 WVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKM--  242 (449)
Q Consensus       165 ~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~--  242 (449)
                       ++.|..++..+    ++.....+....++.+++..++.......++++||..+.+..++.++..+ ....+||+|+-  
T Consensus       126 -~~~E~~~~~~R----~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~  199 (451)
T PF00083_consen  126 -YISEIAPPKHR----GFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLL  199 (451)
T ss_pred             -ccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccceec
Confidence             56666432222    22222222222333333433333221111124699998887776655433 33467887531  


Q ss_pred             -----Cc-c----h--------h--------hh------hhhHhhhcChh----HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 013096          243 -----AF-D----D--------Y--------RT------SFFTYIFGDKR----IWLLVLAQACLQFSIALFWILWAPTL  286 (449)
Q Consensus       243 -----~~-~----~--------~--------~~------~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~  286 (449)
                           ++ +    +        .        .+      ..+++++++++    +........+.+...+.....+.|.+
T Consensus       200 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i  279 (451)
T PF00083_consen  200 SKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI  279 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccc
Confidence                 00 0    0        0        00      12445666533    22211111111111122233455665


Q ss_pred             ccC-CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHh---cc-cch----hHHHHHHH
Q 013096          287 VAD-GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIA---YD-YQE----IGILVALF  357 (449)
Q Consensus       287 ~~~-~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~---~~-~~~----~~~~~~~~  357 (449)
                      .++ +.+.+. .......+...++..+...+.|   |+++|+.+..+..+.+++.....   .. .++    ....+...
T Consensus       280 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  355 (451)
T PF00083_consen  280 FENAGISNSF-LATLILGLVNFLGTLLAIFLID---RFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFL  355 (451)
T ss_pred             cccccccccc-cccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccceee
Confidence            543 211110 0111112334456666667888   78888776665544443333221   11 111    11122222


Q ss_pred             HHHHHHhh-hhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcc-hhHHHHHHHHHHHHHHHHHHH
Q 013096          358 CLFHACVG-LILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIE-NAAMVAFAALGLFIAAGCMHV  434 (449)
Q Consensus       358 ~l~~~~~g-~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  434 (449)
                      +++.+..+ ...|....+..|.+|++.|+++.++......++....+.. ....+..+ ......+.++.++.....+.+
T Consensus       356 ~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~  435 (451)
T PF00083_consen  356 ALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFF  435 (451)
T ss_pred             eeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEE
Confidence            22222222 2235556777999999999999988776555433222221 11222333 333344555566656556667


Q ss_pred             HHHhhcCCCccccC
Q 013096          435 LKRWGKQPYQNWHK  448 (449)
Q Consensus       435 ~~~~~~~~~~~~~~  448 (449)
                      ++|++.++.+|.++
T Consensus       436 lpET~g~~l~ei~~  449 (451)
T PF00083_consen  436 LPETKGKTLEEIQE  449 (451)
T ss_pred             EeeCCCCCHHHHHh
Confidence            89999888888765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=99.62  E-value=6e-13  Score=128.67  Aligned_cols=270  Identities=12%  Similarity=0.005  Sum_probs=165.4

Q ss_pred             HhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc------
Q 013096          137 SITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV------  210 (449)
Q Consensus       137 ~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~------  210 (449)
                      ...+++.++++-++.|.|.+..-++.+. ++.+..    ++|+.++.++..+..++++.+++|.+++.+.....      
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~-~v~~~~----~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~   80 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANP-YVSILG----PIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ   80 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHH-HHHHHC----CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence            4468999999999999999988887765 444442    22335556677777888888999999998773210      


Q ss_pred             -------cCCcchhHHHH-HHHHHHHHHHHHhccccCCCCCcch---hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHH
Q 013096          211 -------KKGVVPSSTAS-VFLSILGIICVSRGWTENPKMAFDD---YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFW  279 (449)
Q Consensus       211 -------~~g~~~~f~~~-~~~~~~~~~~i~~~~~e~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  279 (449)
                             .++|+.+|.+. ....++..++.+...||.+++++++   .+....+.++++|+++...+.. +++.+.-..+
T Consensus        81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-f~yvg~e~~~  159 (310)
T TIGR01272        81 VATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGI-FVYVGAEVSA  159 (310)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHH-HHHHHHHHHH
Confidence                   13688899854 3334433333333455543322111   1111123466677666543332 3333233344


Q ss_pred             HHhhhhhccC----C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHH
Q 013096          280 ILWAPTLVAD----G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILV  354 (449)
Q Consensus       280 ~~~~p~~~~~----~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~  354 (449)
                      ..|.|.|+.+    + ++...+..++.+..++++|..+.+++.|   |++.+|.+..+..+..+...+....++.  ...
T Consensus       160 ~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~---r~g~~~~l~~~~~l~~~~~~l~~~~~~~--~~~  234 (310)
T TIGR01272       160 GSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMP---MISQGRYLAFNAFLAVLLSIGAALTHGY--VAM  234 (310)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHcCCH--HHH
Confidence            5688888853    2 3445677888888999999999999999   8888887765544444333322222221  223


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHH-HHHHHHHhHHhhhcchhHHHH
Q 013096          355 ALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAA-ILLFLLLRGFYRNIENAAMVA  419 (449)
Q Consensus       355 ~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~  419 (449)
                      ..+++.+++.+..+|...+...+..|++ .+++.++.. ...++ .+..++.|.+.|..+....+.
T Consensus       235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~-~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       235 WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILC-LAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH-HHHhcchHHHHHHHHHHHhccchHHHH
Confidence            3555678889999999988888877754 455555542 33343 333444576667666544433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.62  E-value=9.6e-14  Score=130.77  Aligned_cols=368  Identities=13%  Similarity=0.054  Sum_probs=201.3

Q ss_pred             cchhhhHHHHHHHHHHHHHhhhhh----HHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHH
Q 013096           51 SFVPFQRNFLLLFSLASVMEGLWS----VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFF  126 (449)
Q Consensus        51 ~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~  126 (449)
                      .|.++|.....+.-.+.+.|-+..    -+.|.+-..+|.+..|..++...-+.+..+++-.+|.++|++|||+......
T Consensus        71 gfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   71 GFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             CcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            466677666555444444443322    2334445678988888888888888999999999999999999999988877


Q ss_pred             HHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013096          127 ILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWL  205 (449)
Q Consensus       127 ~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l  205 (449)
                      ..-.+... .+.++|+.++.+.|.+.|+|.|. .|...+|+. |..+.. .+.........+.    ++.+....+.-..
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yl-e~lp~~-~r~~~~V~~~~wa----ig~v~ea~law~v  223 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYL-EFLPSS-HRWLLTVMSFFWA----IGQVFEALLAWGV  223 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHH-HhccCc-CCCcchhHHHHHH----HHHHHHHHHHHHH
Confidence            66555444 77889999999999999999988 666555553 332211 1111111222222    3334444555555


Q ss_pred             hcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCC------Ccc--------------------------hh--h---
Q 013096          206 VGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKM------AFD--------------------------DY--R---  248 (449)
Q Consensus       206 ~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~------~~~--------------------------~~--~---  248 (449)
                      +.+.   |||+.......+..+... ..+..+|+++-      +.+                          +.  +   
T Consensus       224 m~~~---gwr~~l~~~~~pl~~~a~-f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~  299 (528)
T KOG0253|consen  224 MSNF---GWRYLLFTSSTPLMFAAR-FLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES  299 (528)
T ss_pred             HHhh---hHHHHHHHHHhHHHHHHH-HHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence            5554   677655554443333222 22235776531      000                          00  0   


Q ss_pred             -------------hhhhHhhhcC---hhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---------c--cc-------
Q 013096          249 -------------TSFFTYIFGD---KRIWLLVLAQACLQFSIALFWILWAPTLVADGR---------E--VH-------  294 (449)
Q Consensus       249 -------------~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------~--~~-------  294 (449)
                                   +...++++..   |+.+.+.... +.+...|+.....+-.+.+.++         +  .+       
T Consensus       300 ~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iw-fgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~  378 (528)
T KOG0253|consen  300 DLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIW-FGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPL  378 (528)
T ss_pred             chhhhhhccccccccchHhhcChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCc
Confidence                         0112333321   1222221111 1121122211111222222110         0  00       


Q ss_pred             ---hHHHH-HHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhH
Q 013096          295 ---LGLIF-PSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       295 ---~g~i~-~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                         .-+.- .....+-.-|.++.+++.|   |+|+++.+...+++.++.++............++. +..-++....+.+
T Consensus       379 s~~~dYrdllitslaefPGlLIt~~ive---rlGRKkTMal~l~~f~iflfll~~c~~rn~~tvll-f~arafisg~fqv  454 (528)
T KOG0253|consen  379 SVAKDYRDLLITSLAEFPGLLITGVIVE---RLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLL-FTARAFISGAFQV  454 (528)
T ss_pred             cchhHHHHHHHHHHhhCCchhHHHHHHH---HhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHH-HHHHHHHhchheE
Confidence               00100 1122445678889999999   89999988877777777666443322222222322 2334555556677


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhcch-hHHHHHHHHHHHHHHHHHHHHH
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIEN-AAMVAFAALGLFIAAGCMHVLK  436 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~  436 (449)
                      .+.+..|.+|+..|+++.|....+.-++.+..+++. ...+.+. -..++..+|.++.. ++..+++
T Consensus       455 aYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilag-IavcffP  519 (528)
T KOG0253|consen  455 AYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAG-IAVCFFP  519 (528)
T ss_pred             EEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHH-HHheeee
Confidence            778889999999999988887666666554454433 2233332 33445556655544 3444433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.60  E-value=3.5e-11  Score=122.46  Aligned_cols=317  Identities=14%  Similarity=0.082  Sum_probs=166.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH-HHHHHH-HHH-hcchhHH-HHHHHHHHhHHHHhhhhhHHHHH
Q 013096           92 MLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL-HLFVGV-WKS-ITAHPSV-WVANICLSLASSIFSFNFETWVA  167 (449)
Q Consensus        92 g~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~-~~~~~l-~~~-~~s~~~l-~~~R~l~Glg~~~~~~~~~a~~v  167 (449)
                      +...++..+..++..|+.|.++|+-||||-++....+ ..+++. ..+ .++-+++ .+.-++.-++.+.....-++ +.
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna-~L  151 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA-YL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence            4556777778888899999999999988887765443 344443 333 3443332 22223333333322222223 44


Q ss_pred             HHHHhhcCCh-h---------------------hHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc-----cCCcchhHHH
Q 013096          168 IEHEKQGQRQ-D---------------------ILSDTFWLMTFFESAALIGGQVLANWLVGIDV-----KKGVVPSSTA  220 (449)
Q Consensus       168 ~~~~~r~~~~-~---------------------~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~-----~~g~~~~f~~  220 (449)
                      +|..+++... +                     ..++..+.....+.++.++.-.+.-.+.....     .++.|..+.+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            4442211110 0                     01333333222233333333332222211110     1234555655


Q ss_pred             HHHHHHHHHHHHHhccccCCC-C--Cc-chh-------hhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 013096          221 SVFLSILGIICVSRGWTENPK-M--AF-DDY-------RTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD  289 (449)
Q Consensus       221 ~~~~~~~~~~~i~~~~~e~~~-~--~~-~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  289 (449)
                      .++..++..+...+..||.++ +  +. ++.       ..+.++++.|+|.+..+.+..++.+-+..+... ....+..+
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~-~~~i~a~~  310 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIIS-FAGIYATE  310 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            544433333334445566554 1  11 111       123456677778877766665555544444322 23344332


Q ss_pred             --C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCch--hHHHHHHHHH-HHHHHHHh------cccchhHHHHHHH
Q 013096          290 --G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTE--DCLLYAFVVL-GFVFSIIA------YDYQEIGILVALF  357 (449)
Q Consensus       290 --~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~--~~l~~~~~~~-~~~l~~~~------~~~~~~~~~~~~~  357 (449)
                        + +..+...+.....+..++|+.+.+++.|   |++.+  +.+....... .+++....      ...++.+...+.-
T Consensus       311 ~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~---r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a  387 (477)
T PF11700_consen  311 VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQD---RFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLA  387 (477)
T ss_pred             hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHH
Confidence              2 3344444445556778899999999998   78877  6655443332 22222111      0112233333344


Q ss_pred             HHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHH-HhHHhhhcc
Q 013096          358 CLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLL-LRGFYRNIE  413 (449)
Q Consensus       358 ~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~-~g~~~~~~~  413 (449)
                      ++.+...|..++..-++.+++.|+++.+..+|++.+..-.....+++ .|...+..+
T Consensus       388 ~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg  444 (477)
T PF11700_consen  388 VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG  444 (477)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            46678888889999999999999999999999988766655444444 455555444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11462 putative transporter; Provisional

Probab=99.60  E-value=3.1e-11  Score=123.30  Aligned_cols=299  Identities=9%  Similarity=0.013  Sum_probs=150.8

Q ss_pred             hHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh----hCchHHHH-HHHHHHHHHHHHHH-hcc------
Q 013096           74 SVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDL----IGQKKVCL-IFFILHLFVGVWKS-ITA------  140 (449)
Q Consensus        74 ~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr----~GRr~~ll-~~~~~~~~~~l~~~-~~s------  140 (449)
                      +.++...| +..|+++..+|.++.+.-+-=++..|+.|.++||    +||||..+ ++.+..++++...+ .|+      
T Consensus        29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~  108 (460)
T PRK11462         29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGK  108 (460)
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchH
Confidence            33443444 4689999999999999988888999999999996    79988865 45566666654322 332      


Q ss_pred             hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc----cCCcch
Q 013096          141 HPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV----KKGVVP  216 (449)
Q Consensus       141 ~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~----~~g~~~  216 (449)
                      +..+.+.-++..++.........+ +.+|.. +|  .++..+..+.-..++.++..+++.+...+.+...    ..+|+.
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~a-l~~~lt-~d--~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~  184 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCA-LGGVIT-ND--PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQG  184 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHH-HHHHhc-CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            334445555556665544333333 344432 22  2233444444333433333333333222222110    124544


Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCC-cchhhhhhhHhhhcChhHHHHHHHHHHHHHHH--HHHHHHhhhhhccCCCcc
Q 013096          217 SSTASVFLSILGIICVSRGWTENPKMA-FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSI--ALFWILWAPTLVADGREV  293 (449)
Q Consensus       217 ~f~~~~~~~~~~~~~i~~~~~e~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~  293 (449)
                      ...+.+++.+++..+.....+|.++++ ++...++.++.+++||..+.+.....+.....  ......+...+.. +.+.
T Consensus       185 ~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~-g~~~  263 (460)
T PRK11462        185 GIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL-GTPE  263 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhcceeccCCCccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc-CChH
Confidence            444433444444333333445543222 12123455788899988766543322221111  1111111222221 2222


Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHH-HHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHH
Q 013096          294 HLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGF-VFSIIAYDYQEIGILVALFCLFHACVGLILPSLA  372 (449)
Q Consensus       294 ~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~  372 (449)
                      ..+.+.....++.++|..+.+++.|   |+++++....+..+.++ .+........+........++.+++.+...+...
T Consensus       264 ~~~~~l~~~~i~~iig~~l~~~l~~---r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        264 VFVAFLTTYCVGNLIGSALAKPLTD---WKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666778889999999998   67766654433222222 1221112222222223333444555555555556


Q ss_pred             HHHhccCC
Q 013096          373 RLRTMYVP  380 (449)
Q Consensus       373 ~~~~~~~p  380 (449)
                      ++..|..+
T Consensus       341 ~m~ad~~d  348 (460)
T PRK11462        341 VMMSDTVD  348 (460)
T ss_pred             HHHHHhHh
Confidence            66666544

>PTZ00207 hypothetical protein; Provisional

Probab=99.58  E-value=2.2e-11  Score=126.03  Aligned_cols=136  Identities=9%  Similarity=0.093  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh------cchhHHHH
Q 013096           74 SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI------TAHPSVWV  146 (449)
Q Consensus        74 ~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~------~s~~~l~~  146 (449)
                      +.+.+++.+++|+|.+|++.+.+.+... ..++++.|+++||+|||++++++.+++.++.+ ++++      ++++.+.+
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            4556777889999999999888775543 45677899999999999999999999998876 6665      68999999


Q ss_pred             HHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHH-HHHHHHHHHhcccccCCcchhHHHH
Q 013096          147 ANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALI-GGQVLANWLVGIDVKKGVVPSSTAS  221 (449)
Q Consensus       147 ~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i-~a~~lg~~l~~~~~~~g~~~~f~~~  221 (449)
                      .|+++|+|.+...+.... .+.+    -++ ++.+.+.+......+++.. .+++...++.+     +|+..|++.
T Consensus       126 ~r~l~G~G~~~~~~~~~~-~i~~----~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----~~~~~fl~l  190 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVV-TVLS----VFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----NTSAYFFFL  190 (591)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHH----hCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHH
Confidence            999999998876555432 2222    233 2346677776666666554 45555555432     445555543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.45  E-value=2.1e-11  Score=120.81  Aligned_cols=142  Identities=8%  Similarity=-0.004  Sum_probs=101.0

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhh
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSF  160 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~  160 (449)
                      +++|.++.+.+.+..........+.++.|+++||+|||+++..+.+...+..+ ....++.+.+.+.++++|++.+...+
T Consensus       228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  307 (375)
T TIGR00899       228 HELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAG  307 (375)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999998877766666677788999999999999998877665444433 34457788888899999998887665


Q ss_pred             hhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHH
Q 013096          161 NFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICV  232 (449)
Q Consensus       161 ~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i  232 (449)
                      ...+ +..|..    ++ +.++..+.......++..++|.+++++.+..   ||+..|...++..+++.+..
T Consensus       308 ~~~~-~~~~~~----~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       308 IGML-YFQDLM----PG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW---SYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHH-HHHHhC----cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHH
Confidence            5433 233322    22 2345666665555577788889888887755   78888888776666655433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.45  E-value=1.9e-11  Score=122.38  Aligned_cols=154  Identities=7%  Similarity=-0.059  Sum_probs=103.2

Q ss_pred             HHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHH
Q 013096           75 VFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLS  152 (449)
Q Consensus        75 ~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~G  152 (449)
                      ...|..+ +++|.++.+.+.+.+...+...++.++.|+++||+|||+.+..+.....+... ....++.+.+++.|++.+
T Consensus       237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3444444 46899999999877776677777889999999999999988776555444333 334577888888999988


Q ss_pred             hHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHH
Q 013096          153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICV  232 (449)
Q Consensus       153 lg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i  232 (449)
                      ++.+...+.... +..|..+    + +.+...+..+....++..++|.+++.+.+.+   ||+.+|.+..++.+++.+..
T Consensus       317 ~~~g~~~~~~~~-~~~~~~p----~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~---g~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK15011        317 IYIGILGGIGML-YFQDLMP----G-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW---NYHAVFWFALVMIIATLFCL  387 (393)
T ss_pred             HHHHHHHHHHHH-HHHHhCC----C-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHH
Confidence            877765444322 2333322    1 2344555544444566677888888887754   88889988777766665544


Q ss_pred             Hhcccc
Q 013096          233 SRGWTE  238 (449)
Q Consensus       233 ~~~~~e  238 (449)
                      . ..||
T Consensus       388 ~-~~~~  392 (393)
T PRK15011        388 L-RIKD  392 (393)
T ss_pred             H-hhcC
Confidence            4 4454

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.44  E-value=1.3e-10  Score=114.91  Aligned_cols=153  Identities=14%  Similarity=0.126  Sum_probs=110.1

Q ss_pred             hhhhHHHHHHHHHhC----CChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHHHHHHHHHHHHH-HHHh--cchh
Q 013096           71 GLWSVFGEYELVYYG----VAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCLIFFILHLFVGV-WKSI--TAHP  142 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g----~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll~~~~~~~~~~l-~~~~--~s~~  142 (449)
                      +++.++...++.+++    +|+++...+++++..-.-+...++|+++||+ |+||++..+.+++.++-+ .+..  .+..
T Consensus        39 GmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~  118 (498)
T COG3104          39 GMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPG  118 (498)
T ss_pred             hhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence            567777777777777    9988876666555433334467899999998 999999999999998876 4444  3678


Q ss_pred             HHHHHHHHHHhHHHHhhhhhHHHHHHHHH-hhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHH
Q 013096          143 SVWVANICLSLASSIFSFNFETWVAIEHE-KQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTAS  221 (449)
Q Consensus       143 ~l~~~R~l~Glg~~~~~~~~~a~~v~~~~-~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~  221 (449)
                      .++++-++.++|.|..-+...+ ++.|.- ++| ++  ....++...++..++...+|.+.+++.+.+   ||+..|.++
T Consensus       119 gl~i~L~~I~iG~Gl~K~NiS~-llg~ly~~~D-pr--rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~---g~~~gF~~a  191 (498)
T COG3104         119 GLYIGLALIIVGTGLFKPNISS-LLGELYPKDD-PR--RDGGFTLFYMGINIGSLIAPIITGLLAINY---GWHVGFGLA  191 (498)
T ss_pred             HHHHHHHHHHhccccccccHHH-HHHHhcCCCC-cc--cCCCccEEEEEeehHHHHHHHHHHHHHHhh---CHHHHHHHH
Confidence            8999999999999988887655 555553 333 22  223444444445567788888888888866   888999887


Q ss_pred             HHHHHHHHH
Q 013096          222 VFLSILGII  230 (449)
Q Consensus       222 ~~~~~~~~~  230 (449)
                      .+...++++
T Consensus       192 avGm~~gl~  200 (498)
T COG3104         192 AVGMIIGLV  200 (498)
T ss_pred             HHHHHHHHH
Confidence            666555543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.43  E-value=5.3e-10  Score=111.44  Aligned_cols=300  Identities=13%  Similarity=0.094  Sum_probs=168.6

Q ss_pred             hhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh----hCchHHHH-HHHHHHHHHHH-HHHhc------
Q 013096           73 WSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDL----IGQKKVCL-IFFILHLFVGV-WKSIT------  139 (449)
Q Consensus        73 ~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr----~GRr~~ll-~~~~~~~~~~l-~~~~~------  139 (449)
                      ...++...|. .+|+++..+|.++.+.=+-=++..|+.|.++||    +||||..+ ++.+-+++.+. +-.++      
T Consensus        31 ~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~  110 (467)
T COG2211          31 VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTG  110 (467)
T ss_pred             HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCc
Confidence            3445555554 689999999999998888889999999999996    88888855 55566776654 44444      


Q ss_pred             chhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH----HHhHHHHHHHHHHHHHHhcccccCCcc
Q 013096          140 AHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT----FFESAALIGGQVLANWLVGIDVKKGVV  215 (449)
Q Consensus       140 s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~----~~~~~~~i~a~~lg~~l~~~~~~~g~~  215 (449)
                      +....++.-.+.+++.+.....-++ +.+|. .++..  +..+..+.-.    .++.+..++.+++-..+.+.....||+
T Consensus       111 k~~ya~vtY~l~~l~YT~vniPy~a-l~~~i-T~d~~--ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~  186 (467)
T COG2211         111 KLIYALVTYMLLGLGYTLVNIPYGA-LGPEI-TQDPQ--ERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQ  186 (467)
T ss_pred             chHHHHHHHHHHHHHHHheeCchhh-cchhh-cCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHH
Confidence            2344555566777776654332233 33433 22321  2222333222    222233333334444433321123554


Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCCC--cc----hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 013096          216 PSSTASVFLSILGIICVSRGWTENPKMA--FD----DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD  289 (449)
Q Consensus       216 ~~f~~~~~~~~~~~~~i~~~~~e~~~~~--~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  289 (449)
                      ..-.+..+...+..+..++..+|...++  .+    ...++.+..+++||+.+.+.+...+...+ +.........+.+.
T Consensus       187 ~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~-~~i~~s~~~yy~~y  265 (467)
T COG2211         187 GTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA-FNIRGSIMVYYVTY  265 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHhhhhheeEEE
Confidence            4433333444444444555556654321  11    12233456788999888766643333222 22222223333332


Q ss_pred             ---CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHhh
Q 013096          290 ---GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY-QEIGILVALFCLFHACVG  365 (449)
Q Consensus       290 ---~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~g  365 (449)
                         ..+...+........+.+.+..+.+++.+   |+++++....+.++..++-....+.+ ++..+.+...++.+++.+
T Consensus       266 ~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~---~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~  342 (467)
T COG2211         266 VLGDPELFAYLLLLASGAGLLIGLILWPRLVK---KFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG  342 (467)
T ss_pred             EcCChHHHHHHHHHHHHHHHHHHHHhHHHHHH---HhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence               23333444444555666677899999998   78888887776555544443333333 334444455567778888


Q ss_pred             hhhhHHHHHHhccCC
Q 013096          366 LILPSLARLRTMYVP  380 (449)
Q Consensus       366 ~~~p~~~~~~~~~~p  380 (449)
                      ...+...++..|..+
T Consensus       343 ~~~~l~wam~~d~vD  357 (467)
T COG2211         343 IANPLPWAMVADTVD  357 (467)
T ss_pred             ccccccHHHhcchhh
Confidence            888888888887655

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.41  E-value=5.6e-11  Score=118.54  Aligned_cols=149  Identities=11%  Similarity=0.048  Sum_probs=111.9

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ....+.+...+|.|.++.++|.+...+.++..+..++.|++.||+|+|+.+..+.+...+... ..+++|.+.+++.+++
T Consensus       223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l  302 (382)
T TIGR00902       223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQIL  302 (382)
T ss_pred             HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence            334455565678999999999998888888888899999999999999999988888877654 5678999999999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH-HHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT-FFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~-~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      +|+..+...++... ++.+    . ++++.+..++..+ ...+++..+++.++|++.+..   |+ ..|...+...+++.
T Consensus       303 ~g~~~~~~~~~~~~-~i~~----~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       303 HCGTFAVCHLAAMR-YIAA----Q-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHH-HHHh----C-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHH
Confidence            99999988777543 3332    2 4444555566543 345677788999999998865   64 45666555555554


Q ss_pred             H
Q 013096          230 I  230 (449)
Q Consensus       230 ~  230 (449)
                      +
T Consensus       373 ~  373 (382)
T TIGR00902       373 F  373 (382)
T ss_pred             H
Confidence            3

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.39  E-value=8.3e-09  Score=100.34  Aligned_cols=302  Identities=12%  Similarity=0.043  Sum_probs=165.7

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhC-----chHHHHHHHH-HHHHHH-H-----HHHhc-------ch-
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIG-----QKKVCLIFFI-LHLFVG-V-----WKSIT-------AH-  141 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~G-----Rr~~ll~~~~-~~~~~~-l-----~~~~~-------s~-  141 (449)
                      .|++++..-++.+.+.-++.+.. .+.+|..||+++     ||...++... +...+. +     ..+..       +. 
T Consensus         8 vEL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHH-HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            57888888888777777766554 889999999999     9999887533 332221 1     11222       11 


Q ss_pred             -h--HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhH
Q 013096          142 -P--SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSS  218 (449)
Q Consensus       142 -~--~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f  218 (449)
                       +  ...+.-.+.|+|.+...++..+ +..|..    ++|+.+++.+.+-....++.+++..+.+.+.+.+...+-...+
T Consensus        87 ~g~~~a~l~F~l~G~G~~~s~T~~lA-Ll~D~~----~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~  161 (403)
T PF03209_consen   87 LGLALAALAFLLYGLGVHASGTSFLA-LLADLA----PEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI  161 (403)
T ss_pred             HHHHHHHHHHHHHHhhHhHhHHHHHH-HHHhcC----CHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence             2  3445566778877765555433 334432    3333444444433333344566666667666644111111111


Q ss_pred             HHH-HHHHHHHHHHHHhccccCCCC--C-----cchhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-
Q 013096          219 TAS-VFLSILGIICVSRGWTENPKM--A-----FDDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-  289 (449)
Q Consensus       219 ~~~-~~~~~~~~~~i~~~~~e~~~~--~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  289 (449)
                      ... .+...+..+.++.  .|.+.+  .     ++...++.++++.+||+...+....++...+++.     +-.+++- 
T Consensus       162 ~~~a~i~~~l~~ia~wg--~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~-----QD~iLEPy  234 (403)
T PF03209_consen  162 QGVALIALLLNLIALWG--QEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFM-----QDVILEPY  234 (403)
T ss_pred             HHHHHHHHHHHHHHHHh--cccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHh-----hHHHcCCc
Confidence            111 1222222222332  232211  1     1112245678888888777654433333222221     2223321 


Q ss_pred             -----C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHH
Q 013096          290 -----G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFS--IIAYDYQEIGILVALFCLFH  361 (449)
Q Consensus       290 -----~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~l~~  361 (449)
                           + +..+.....+....+..+|-.+.+++..+  |.++++....+..+..+++.  +.+-..++.+.+-....+++
T Consensus       235 gg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~--~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  235 GGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR--RLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             hhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence                 1 22334455566677888888888888875  66666655555444333332  22222223445556677889


Q ss_pred             HHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHH
Q 013096          362 ACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAA  398 (449)
Q Consensus       362 ~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~  398 (449)
                      ++.|+.....-+...+..++++.|..+|.-...+..+
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A  349 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIA  349 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHH
Confidence            9999888777778888988898898888766555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.37  E-value=5.8e-10  Score=108.67  Aligned_cols=340  Identities=15%  Similarity=0.041  Sum_probs=166.9

Q ss_pred             chhhhHHHHHH--HHHHHH---Hhhhh-hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHH
Q 013096           52 FVPFQRNFLLL--FSLASV---MEGLW-SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIF  125 (449)
Q Consensus        52 ~~~~~~~~~~~--~~l~~~---~~~~~-~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~  125 (449)
                      .|-.+||++++  +.+...   ..|++ +|.--..-..|| +....-+.-.++.+.+...+.++=++.|++|-|...+++
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg  115 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG  115 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence            34455555443  333333   33443 343322223566 555556677777788888888999999999999999999


Q ss_pred             HHHHHHHHH--HHHh-c----chh--HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHH
Q 013096          126 FILHLFVGV--WKSI-T----AHP--SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALI  196 (449)
Q Consensus       126 ~~~~~~~~l--~~~~-~----s~~--~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i  196 (449)
                      .....+++.  +.-+ +    .++  ....+..+.+.+.-.....     .+....--++.++.+.+.....++|-++..
T Consensus       116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~l-----PskiA~~WF~~~qra~A~~~~v~~n~LGva  190 (480)
T KOG2563|consen  116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGL-----PSKIAAVWFPPDQRAIATVLGVMGNPLGVA  190 (480)
T ss_pred             HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcc-----ccHHHHhhCCcchhhhhhhHHHhcchHHHH
Confidence            999888764  2211 2    223  3334444443333221111     011111123444444444444445544444


Q ss_pred             HHHHHHHHHhccc---ccCCcch--hHHHHHHHHHHHHHHHHhccccC---CCCC-cchh----hhhhhHhhhcChhHHH
Q 013096          197 GGQVLANWLVGID---VKKGVVP--SSTASVFLSILGIICVSRGWTEN---PKMA-FDDY----RTSFFTYIFGDKRIWL  263 (449)
Q Consensus       197 ~a~~lg~~l~~~~---~~~g~~~--~f~~~~~~~~~~~~~i~~~~~e~---~~~~-~~~~----~~~~~~~l~~~~~~~~  263 (449)
                      ++-++...+.++.   .+..|..  .|.....+.++.+.+..+..+|.   ++.. ..+.    ..++.+..++|+++..
T Consensus       191 vg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~i  270 (480)
T KOG2563|consen  191 VGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFII  270 (480)
T ss_pred             HHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHH
Confidence            4444444444322   0123322  23222222221112222222332   2211 1111    2345778899999987


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCC-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHH-HH
Q 013096          264 LVLAQACLQFSIALFWILWAPTLVADG-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFV-FS  341 (449)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~-l~  341 (449)
                      +.+......+.++.......+.+...+ .+...|.+.....++.++|+.+.+.+.||+++++  ...........++ +.
T Consensus       271 l~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk--~~~~v~~~~~~v~~~~  348 (480)
T KOG2563|consen  271 LAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK--LTTLVLYLFALVGTLM  348 (480)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH--HHHHHHHHHHHHHHHH
Confidence            766555444433332222222222122 3456788888788889999999999999644332  2222222112222 22


Q ss_pred             HHhc--ccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH
Q 013096          342 IIAY--DYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI  399 (449)
Q Consensus       342 ~~~~--~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~  399 (449)
                      +...  .....+.+.....+++++.-...|.-..+..|..=++.-|+-.|+.+...++..
T Consensus       349 l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~  408 (480)
T KOG2563|consen  349 LLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFG  408 (480)
T ss_pred             HHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHH
Confidence            1111  111122223333344555545677666666666444555666777666555543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.36  E-value=1.4e-10  Score=117.03  Aligned_cols=163  Identities=12%  Similarity=0.028  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhCCCh--------HHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh-c---ch
Q 013096           75 VFGEYELVYYGVAK--------EQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI-T---AH  141 (449)
Q Consensus        75 ~~~~~l~~~~g~s~--------~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~-~---s~  141 (449)
                      .+.+...++.|.++        ++.+...+...+...++.++.|+++||+|||++++.+.++..+... .... +   +.
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            33344445666443        5567778888888888899999999999999999999888877643 3332 2   34


Q ss_pred             hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH-HHhHHHHHHHHHHHHHHhccccc---CCcchh
Q 013096          142 PSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT-FFESAALIGGQVLANWLVGIDVK---KGVVPS  217 (449)
Q Consensus       142 ~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~-~~~~~~~i~a~~lg~~l~~~~~~---~g~~~~  217 (449)
                      +.+++.++++|++.+...+.... ++.|.    .++++.++.++..+ ...+++.+++|.+++++.+...+   +||+..
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~-~i~~~----~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~  383 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSV-FVEKE----VPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTM  383 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHH----CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHH
Confidence            66788899999998876555332 33433    46667788888875 45667788899999998876411   478888


Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCC
Q 013096          218 STASVFLSILGIICVSRGWTENPKM  242 (449)
Q Consensus       218 f~~~~~~~~~~~~~i~~~~~e~~~~  242 (449)
                      |.+.+++.+++.++..+.++|+++.
T Consensus       384 f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       384 WLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccC
Confidence            8877666555555555566776543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.36  E-value=1e-10  Score=117.46  Aligned_cols=150  Identities=14%  Similarity=0.092  Sum_probs=104.3

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhH
Q 013096           76 FGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLA  154 (449)
Q Consensus        76 ~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg  154 (449)
                      +.|.+.++.|.++.+.+...+...++..+++++.|+++||+|||+.+..+.+...++.+ ....++.+.+.+.-++.|++
T Consensus       242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            44566678899999999988888888899999999999999999998876555554443 44566777777777888887


Q ss_pred             HHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHH
Q 013096          155 SSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICV  232 (449)
Q Consensus       155 ~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i  232 (449)
                      .+...+...+ +..|.    .++++.++..+.......++..++|.+++++.+..  .+|...+.......+++.+..
T Consensus       322 ~~~~~~~~~~-~~~~~----~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        322 VVGGQSVLYA-LAPLF----YPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             HHhHHHHHHH-HHHHH----cchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHH
Confidence            6655444333 22332    45556677777777777777788999999887653  244445555544444443333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.36  E-value=3.7e-11  Score=120.53  Aligned_cols=135  Identities=13%  Similarity=0.157  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHH
Q 013096           92 MLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEH  170 (449)
Q Consensus        92 g~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~  170 (449)
                      +.+.....++..++.+..|+++||+|||+++..+.....+..+ ....++.+.+.+.+++.|++.+...+...+.. .+.
T Consensus       261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~  339 (408)
T PRK09874        261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL-VYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHH-HHh
Confidence            3444455566777888999999999999999888777666554 45567888889999999999987766654422 221


Q ss_pred             HhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHh
Q 013096          171 EKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSR  234 (449)
Q Consensus       171 ~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~  234 (449)
                          .+++..++.++.......++..++|.+++++.+..   ||+..|.+.+.+.+++.+...+
T Consensus       340 ----~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 ----SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY---GFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             ----CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHHH
Confidence                23333445556555555666778889899887754   8889999877666665544443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.35  E-value=1.5e-10  Score=115.97  Aligned_cols=151  Identities=11%  Similarity=0.011  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHH
Q 013096           73 WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICL  151 (449)
Q Consensus        73 ~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~  151 (449)
                      ..++.+..+++.|.+  +.+...+...++..++.++.|++.||+||||.+..+..+..++.+ ....+|.+.+++.+++.
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (399)
T PRK05122        235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALT  312 (399)
T ss_pred             HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            344555555666664  334445555566677788999999999999998888777666554 55667888888999999


Q ss_pred             HhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHH
Q 013096          152 SLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIIC  231 (449)
Q Consensus       152 Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~  231 (449)
                      |++.+...+...... .|    ..+++..++..+..+....++..++|.+.+++.+..   ||+..|.+.....+++.+.
T Consensus       313 G~~~~~~~~~~~~~~-~~----~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~  384 (399)
T PRK05122        313 GFGFSLVFPALGVEA-VK----RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF---GYPSIFLAAALAALLGLAL  384 (399)
T ss_pred             HHhHHHHHHHHHHHH-HH----hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHH
Confidence            999987666543322 22    245566777888776666666666777788887754   8888888776665555444


Q ss_pred             HH
Q 013096          232 VS  233 (449)
Q Consensus       232 i~  233 (449)
                      ..
T Consensus       385 ~~  386 (399)
T PRK05122        385 TW  386 (399)
T ss_pred             HH
Confidence            44

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.34  E-value=2e-09  Score=104.38  Aligned_cols=310  Identities=16%  Similarity=0.091  Sum_probs=157.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH--HHHhcc--hh-HHHHHHHHHHhHHHHhhhhhHHHH
Q 013096           92 MLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV--WKSITA--HP-SVWVANICLSLASSIFSFNFETWV  166 (449)
Q Consensus        92 g~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l--~~~~~s--~~-~l~~~R~l~Glg~~~~~~~~~a~~  166 (449)
                      +...++..+..++.+|+.|.++|+.|+||..+.......+.+.  ..++++  .+ ..++.-++..++.......-++ +
T Consensus        61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds-~  139 (438)
T COG2270          61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS-M  139 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh-H
Confidence            3445666677778899999999999988887766555544332  333333  44 4444455555555433222233 3


Q ss_pred             HHHHHhhcCCh--hhHHHHHHHHHHHhHHH--HHHHHHHHH----HH-h-----cccccCCcchhHHHHHHHHHHHHHHH
Q 013096          167 AIEHEKQGQRQ--DILSDTFWLMTFFESAA--LIGGQVLAN----WL-V-----GIDVKKGVVPSSTASVFLSILGIICV  232 (449)
Q Consensus       167 v~~~~~r~~~~--~~l~~~~~~~~~~~~~~--~i~a~~lg~----~l-~-----~~~~~~g~~~~f~~~~~~~~~~~~~i  232 (449)
                      ..+..+++.-+  ..++...+.  .++.+.  .+.+..+++    .- .     +.. +..-|..+.+.++-.++..+-.
T Consensus       140 L~~~~~k~~~~riS~lg~~~gy--lgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         140 LPRLTTKDNMGRISGLGWALGY--LGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhhhcCccccCccccccccccc--ccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhHH
Confidence            33332221111  111111111  111111  111111111    00 0     001 2234555555444333333333


Q ss_pred             HhccccCCCC--Ccch-------hhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHH
Q 013096          233 SRGWTENPKM--AFDD-------YRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFP  300 (449)
Q Consensus       233 ~~~~~e~~~~--~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~  300 (449)
                      .+..++.++.  +.++       ..++.++++.+++.+..+.+..+++.-+..+... ..-.+-..  + ++.+...+-.
T Consensus       217 ~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~-~~~~fg~~~~gls~~~lll~g~  295 (438)
T COG2270         217 ILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILA-MGGVFGAADLGLSSTELLLIGI  295 (438)
T ss_pred             HhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHH-HHHHHHHHHcCccHHHHHHHHH
Confidence            3444443311  1111       1235577888888776655554444333332211 12223221  1 3344444444


Q ss_pred             HHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCC
Q 013096          301 SLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVP  380 (449)
Q Consensus       301 ~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p  380 (449)
                      ...+..++|+.+.+++.+   |++.++++..+.++..+.-+...+...+.. .+..-++.+...|..+...-++..+.+|
T Consensus       296 ~~~vvA~lg~ii~g~Ld~---rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~-f~i~gll~g~s~G~~qA~SRSy~~~lvp  371 (438)
T COG2270         296 ALSVVAALGAIIAGFLDE---RFGSKPVLMIGLVILSIAALYLIFLEGELD-FWILGLLVGTSLGGAQASSRSYLARLVP  371 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH---HhCCceeehHHHHHHHHHHHHHHHccccHH-HHHHHHHHHHhcchHHHHHHHHHHHhCC
Confidence            445667899999999998   899888777665544332222222222221 2222245567788888889999999999


Q ss_pred             CcchhHHHHhhHHHHHHHHHHHH-HHhHHhh
Q 013096          381 NELRGGMISLSLAPANAAILLFL-LLRGFYR  410 (449)
Q Consensus       381 ~~~rg~~~~~~~~~~~~~~~~~~-~~g~~~~  410 (449)
                      +++-++.+|++....-.....++ +.+.+.+
T Consensus       372 ~~k~~~fFglyaltgra~S~~gp~lv~v~t~  402 (438)
T COG2270         372 KGKEGRFFGLYALTGRAASFLGPFLVAVITQ  402 (438)
T ss_pred             CccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999998876555433333 3344433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.34  E-value=2.6e-10  Score=113.74  Aligned_cols=146  Identities=13%  Similarity=0.040  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHh
Q 013096           75 VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSL  153 (449)
Q Consensus        75 ~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Gl  153 (449)
                      .+.+...+|.|.++.++|.+.+.+.+...+...+.|++.||+|+|+.+..+.+...+..+ ....++.+.+++..++.|+
T Consensus       226 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  305 (382)
T PRK11128        226 GFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCG  305 (382)
T ss_pred             HHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            344444478899999999988888888888889999999999999999888877766544 5567889999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH-HHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          154 ASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT-FFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       154 g~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~-~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      +.+...+.... ++.+     .++++.++.++... ..++.+..++|.+++.+.+.+   |+ ..|...+.+.++++.
T Consensus       306 ~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        306 TFTVCHLAAMR-YIAA-----RPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHH-HHHH-----CCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHH
Confidence            98876555433 2222     12333455566543 334455678899999998865   65 456655555555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.32  E-value=1.5e-10  Score=114.20  Aligned_cols=144  Identities=13%  Similarity=-0.007  Sum_probs=102.7

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcch--hHHHHHHHHHHh
Q 013096           77 GEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAH--PSVWVANICLSL  153 (449)
Q Consensus        77 ~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~--~~l~~~R~l~Gl  153 (449)
                      .++..+++|.++.+.+...+...+...++.++.|+++||+|||+.+..+..+..++.+ ....++.  ..++...++.|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  307 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFF  307 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Confidence            3444578899988888888888888889999999999999999999888877776654 4444432  334556778888


Q ss_pred             HHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          154 ASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       154 g~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      +.+...+...+ ++.|.    .++++.++.++.......++..++|.+.+++.+..   ||+..|.+..++.+++
T Consensus       308 ~~g~~~~~~~~-~~~~~----~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       308 TWGGTISLFPS-LVSDI----FGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI---GFEYTFIVTGAFALTS  374 (377)
T ss_pred             HhccchhccHH-HHHHH----hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh---chhhHHHHHHHHHHHh
Confidence            77655443322 33333    34445667777777677777888899899887755   8888888766655543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.32  E-value=5.9e-10  Score=111.61  Aligned_cols=162  Identities=9%  Similarity=-0.054  Sum_probs=106.2

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHH-hcchhHHHHHHHH
Q 013096           73 WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKS-ITAHPSVWVANIC  150 (449)
Q Consensus        73 ~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~-~~s~~~l~~~R~l  150 (449)
                      ...+.|...+++|.++.+.+...+...++..++.+..|+++||+|||+.+..+..+..++.+ ... .++...+.  -++
T Consensus       224 ~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l  301 (393)
T PRK09705        224 LIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMV  301 (393)
T ss_pred             HHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHH
Confidence            34456666778899999999888888889999999999999999999998888766655543 222 22322222  245


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      .|++.+...+....+.. +   +..++++.++.++.......++..++|.+.+++.+.. + ++...|.+.+...++...
T Consensus       302 ~g~g~g~~~~~~~~~~~-~---~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-g-~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        302 CGLGLGGAFPLCLLLAL-D---HSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-G-NYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             HHHhccchHHHHHHHHH-h---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CchHHHHHHHHHHHHHHH
Confidence            67777766555332222 1   1123445667777666666666778899999988865 1 366677766555544444


Q ss_pred             HHHhccccCCCC
Q 013096          231 CVSRGWTENPKM  242 (449)
Q Consensus       231 ~i~~~~~e~~~~  242 (449)
                      ......||++++
T Consensus       376 ~~~~~~~~~~~~  387 (393)
T PRK09705        376 ITLRFAPARFPQ  387 (393)
T ss_pred             HHHHhccccccc
Confidence            444445666543

>PRK12382 putative transporter; Provisional

Probab=99.30  E-value=4.5e-10  Score=112.29  Aligned_cols=152  Identities=15%  Similarity=0.069  Sum_probs=108.0

Q ss_pred             hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           72 LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        72 ~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ....+.+..+++.|.++.  +.......++..+++++.|++.||+||||.+..+..+..++.+ ....++.+.+++.+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        234 VIGTFVSLYFASKGWAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            334455555567676543  4444555566677889999999999999999988877776654 5566788888889999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      .|++.+...+...+. +.|    ..++++.++.++..+....++..++|.+.+++.+..   ||+..|...+.+.+++.+
T Consensus       312 ~g~~~~~~~~~~~~~-~~~----~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~  383 (392)
T PRK12382        312 TGAGCSLIFPALGVE-VVK----RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---GYPSVFLAGAISAVLGII  383 (392)
T ss_pred             HHHHHHhHHHHHHHH-HHH----hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHH
Confidence            999988766654332 222    245566777888777666677778888999888765   888899887766665554


Q ss_pred             HHH
Q 013096          231 CVS  233 (449)
Q Consensus       231 ~i~  233 (449)
                      ...
T Consensus       384 ~~~  386 (392)
T PRK12382        384 VTI  386 (392)
T ss_pred             HHH
Confidence            443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.29  E-value=5e-11  Score=100.00  Aligned_cols=133  Identities=13%  Similarity=0.085  Sum_probs=97.4

Q ss_pred             HHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCC
Q 013096           98 GFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQR  176 (449)
Q Consensus        98 ~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~  176 (449)
                      ..++..+++++.|+++||+|||+.+..+.....++.+ ....++++.+.+.+++.|++.+...+...+ ++.|.    .+
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~----~~   81 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAA-LIADI----YP   81 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHH-HHHHH----CC
Confidence            3456677789999999999999999988887777665 566789999999999999999877666544 33333    34


Q ss_pred             hhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhcccc
Q 013096          177 QDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTE  238 (449)
Q Consensus       177 ~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e  238 (449)
                      +++.++..+.......++..++|.+++++.+..   +|++.|.+.....++..+...+..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFL---GWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc---chHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            444566777766677777788888888887654   78888887666555554444444454

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.26  E-value=4.9e-10  Score=113.16  Aligned_cols=150  Identities=10%  Similarity=-0.040  Sum_probs=102.7

Q ss_pred             HHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhh
Q 013096           81 LVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFS  159 (449)
Q Consensus        81 ~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~  159 (449)
                      +.+.+.+..+.+.+.+...+...++.++.|+++||+|||+.+..+.++.++... ..+++|.+.+++.++++|++.+...
T Consensus       254 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~  333 (420)
T PRK09528        254 FATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLL  333 (420)
T ss_pred             HhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            344567777888888888888888899999999999999999888887777654 5667899999999999999887655


Q ss_pred             hhhHHHHHHHHHhhcCChhhHHHHHHH-HHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhcccc
Q 013096          160 FNFETWVAIEHEKQGQRQDILSDTFWL-MTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTE  238 (449)
Q Consensus       160 ~~~~a~~v~~~~~r~~~~~~l~~~~~~-~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e  238 (449)
                      +.... ++.|..    +++..+..++. .+....++.++++.+++++.+..   ||+..|.....+.++..++..+..++
T Consensus       334 ~~~~~-~~~~~~----~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~---G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        334 VGVFK-YITLNF----DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI---GFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHH-HHHHHc----CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44332 333322    22222222221 23344566778888899988865   89999987655544443333333333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.26  E-value=9.8e-10  Score=107.08  Aligned_cols=153  Identities=18%  Similarity=0.104  Sum_probs=119.3

Q ss_pred             hhhhHHHHHHHHHh-CCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchH-HHHHHHHHHHHHHH-HHHhcchhHHHHH
Q 013096           71 GLWSVFGEYELVYY-GVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK-VCLIFFILHLFVGV-WKSITAHPSVWVA  147 (449)
Q Consensus        71 ~~~~~~~~~l~~~~-g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~-~ll~~~~~~~~~~l-~~~~~s~~~l~~~  147 (449)
                      .....+.+...++. |.++.+.+.......++..++.++.|+++||+|||+ .+..+..+..++.+ ....++.+.+.+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  271 (352)
T cd06174         192 YGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA  271 (352)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            33445555655554 899999999999998999999999999999999999 88888888877765 5667788899999


Q ss_pred             HHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q 013096          148 NICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSIL  227 (449)
Q Consensus       148 R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~  227 (449)
                      .++.|++.+...+...+ ++.|.    .++++.++.++.......++..+++.+.+.+.+..   +|+..|.+.....++
T Consensus       272 ~~~~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~---~~~~~~~~~~~~~~i  343 (352)
T cd06174         272 LLLLGFGLGFAFPALLT-LASEL----APPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG---GYGGVFLILAALALL  343 (352)
T ss_pred             HHHHHHHHhccchhHHH-HHHhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CcchHHHHHHHHHHH
Confidence            99999999887766544 33332    35566778888877777788888999999888754   888889887776666


Q ss_pred             HHHH
Q 013096          228 GIIC  231 (449)
Q Consensus       228 ~~~~  231 (449)
                      +.+.
T Consensus       344 ~~i~  347 (352)
T cd06174         344 AALL  347 (352)
T ss_pred             HHHH
Confidence            5443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03699 putative transporter; Provisional

Probab=99.26  E-value=1.1e-09  Score=109.56  Aligned_cols=147  Identities=12%  Similarity=0.031  Sum_probs=99.8

Q ss_pred             hhHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           73 WSVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        73 ~~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ...+.|... +++|+|+.+.+.+.+...++..++.+..|.++||+|||+++.....+..+... ....+|.+.+.+.-++
T Consensus       224 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (394)
T PRK03699        224 FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG  303 (394)
T ss_pred             HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            334556666 46799999999888888888899999999999999999998876655544433 3455777777777888


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      .|++.+..++...+ ...|..+ +.+    ++..+.......++..++|.+.+++.+..   |++..|+....+..++
T Consensus       304 ~G~~~~~~~~~~~~-~~~~~~~-~~~----~~~~g~~~~~~~~g~~i~p~~~G~l~~~~---g~~~~~~~~~~~~~~~  372 (394)
T PRK03699        304 LGFFSSAIYTTIIT-LGSQQTK-VAS----PKLVNFILTCGTIGTMLTFVVTSPIVAHF---GLQAALLTANGLYAVV  372 (394)
T ss_pred             HHHHHHHHHHHHHH-HHHHHcc-CCC----HHHHHHHHHhhhHHHHHHHHHHHHHHHHh---CchhhhhhhHHHHHHH
Confidence            88877766655433 2222211 111    22334434444567778899899888765   7888887655544443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.25  E-value=8.4e-10  Score=110.32  Aligned_cols=149  Identities=13%  Similarity=0.064  Sum_probs=100.8

Q ss_pred             HHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH-H-HHHhcchhHHHHHHHHHH
Q 013096           76 FGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG-V-WKSITAHPSVWVANICLS  152 (449)
Q Consensus        76 ~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~-l-~~~~~s~~~l~~~R~l~G  152 (449)
                      +.++.++ ++|.|+.+.+.+.+...++..+++++.|+++||+|||++... ..+..++. . ....++.+.+.+..++.|
T Consensus       227 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        227 YIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            3444444 478999999988888888889999999999999999876443 33333322 2 334567888888899999


Q ss_pred             hHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHH
Q 013096          153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICV  232 (449)
Q Consensus       153 lg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i  232 (449)
                      ++.+...+...++. .+.    .+ +..+++++..+....++..+||.+++++.+.+   |++..|...+.+.+++.+..
T Consensus       306 ~~~~~~~~~~~~~~-~~~----~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~---g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        306 IAIMCIGLAMQVKV-LKL----AP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL---GLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHhcchHHHHHHH-HHh----CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ChhHHHHHHHHHHHHHHHHH
Confidence            98765555443322 222    12 23456666555555566667889999988765   88888988776666655444


Q ss_pred             Hh
Q 013096          233 SR  234 (449)
Q Consensus       233 ~~  234 (449)
                      .+
T Consensus       377 ~~  378 (390)
T PRK03545        377 IL  378 (390)
T ss_pred             HH
Confidence            43

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.25  E-value=5.7e-10  Score=112.57  Aligned_cols=158  Identities=15%  Similarity=-0.033  Sum_probs=109.1

Q ss_pred             HHHHHHHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHh
Q 013096           76 FGEYELVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSL  153 (449)
Q Consensus        76 ~~~~l~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Gl  153 (449)
                      +.|...++ +|.++.+.+.+.+...++..+++++.|+++||.++|+.+..+.++..++.+ ....++.+.+.+..++.|+
T Consensus       245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  324 (417)
T PRK10489        245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY  324 (417)
T ss_pred             hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            34445555 899999999888888888889999999999998888888877766655544 4566777778888888888


Q ss_pred             HHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHH
Q 013096          154 ASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVS  233 (449)
Q Consensus       154 g~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~  233 (449)
                      +.+...+...+ ++.    +..|++..++.++.......++..++|.+.+++.+..   |.+..+...+...++...+..
T Consensus       325 ~~~~~~~~~~~-~~~----~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~---g~~~~~~~~~~~~~~~~~~~~  396 (417)
T PRK10489        325 LSAISSLLQYT-LLQ----TQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM---TPVASASASGFGLLIIGVLLL  396 (417)
T ss_pred             HHHHHHHHHHH-HHH----hhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHHH
Confidence            87754443222 222    2245666778888777666677778889899888755   666666654444333333333


Q ss_pred             hccccCCC
Q 013096          234 RGWTENPK  241 (449)
Q Consensus       234 ~~~~e~~~  241 (449)
                      ...+|.++
T Consensus       397 ~~~~~~~~  404 (417)
T PRK10489        397 LVLGELRR  404 (417)
T ss_pred             Hhcccccc
Confidence            34455544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.25  E-value=2.3e-09  Score=106.89  Aligned_cols=149  Identities=11%  Similarity=0.024  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhH
Q 013096           75 VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLA  154 (449)
Q Consensus        75 ~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~~~~s~~~l~~~R~l~Glg  154 (449)
                      .+.|...++.|.++++++.+.+...+...+++++.|+++||+|||+++..+..+..++++...  +.......+++.|++
T Consensus       221 ~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~  298 (381)
T PRK03633        221 GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQAAMAPALFILGAA  298 (381)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH
Confidence            345555577899999999888888888889999999999999999998887777666543222  223445567888887


Q ss_pred             HHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHH
Q 013096          155 SSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVS  233 (449)
Q Consensus       155 ~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~  233 (449)
                      .....|...++. .|.    .++++.+...+.......++..++|.+++++.+++   ++++.|.+.+.+.++.....+
T Consensus       299 ~~~~~p~~~~~~-~~~----~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        299 GFTLYPVAMAWA-CEK----VEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY---SDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHhHHHHHHHHH-Hcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHH
Confidence            766666655432 222    23333444444444455667788999999998866   788888876666555544333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.24  E-value=2.6e-08  Score=100.83  Aligned_cols=309  Identities=14%  Similarity=0.066  Sum_probs=168.6

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhC----chHH-HHHHHHHHHHHHH-HHH----hcchhHHH
Q 013096           76 FGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIG----QKKV-CLIFFILHLFVGV-WKS----ITAHPSVW  145 (449)
Q Consensus        76 ~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~G----Rr~~-ll~~~~~~~~~~l-~~~----~~s~~~l~  145 (449)
                      ..|.+.+++|++++|.+...+...++..+ -|+.|.++|.+-    |||. ++++.++.+++.+ ++.    .++.....
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~   90 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV   90 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence            34555678999999999888888887766 789999999984    5555 4556555544332 332    23566666


Q ss_pred             HHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHH
Q 013096          146 VANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLS  225 (449)
Q Consensus       146 ~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~  225 (449)
                      +.-++..+|.+..-...++.+ .|..+|+ +.+ .++..+.......++.+++..+++.+.+..   +++..|.+...+.
T Consensus        91 ~~l~la~~g~a~~DV~aDa~v-vE~~~~~-p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~---~~~~~f~i~~~~~  164 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALV-VELARRE-PES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSF---GPQGVFLISAALP  164 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHH-HHHhhcC-Cch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcC---CCeEEehHHHHHH
Confidence            677788888877766677644 4443333 333 444555444444556667777777777654   6777887765554


Q ss_pred             HHHHHHHHhccccCCCCCc-------ch----------hhhhhhHhhhcChhHHHHHHH-HHHHHHHHHHHHHHhhhhh-
Q 013096          226 ILGIICVSRGWTENPKMAF-------DD----------YRTSFFTYIFGDKRIWLLVLA-QACLQFSIALFWILWAPTL-  286 (449)
Q Consensus       226 ~~~~~~i~~~~~e~~~~~~-------~~----------~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~-  286 (449)
                      .+..+......+|.+.+++       ++          ++...+++.+++|.++...+. ..+     +    ...|.. 
T Consensus       165 ~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-----~----~~~~~~~  235 (433)
T PF03092_consen  165 LLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFF-----F----NLPPSIS  235 (433)
T ss_pred             HHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----H----HhccCCC
Confidence            4443333333343111110       00          011223445555655544331 111     1    111111 


Q ss_pred             ------cc-C---C---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH-Hhc-cc-c--
Q 013096          287 ------VA-D---G---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSI-IAY-DY-Q--  348 (449)
Q Consensus       287 ------~~-~---~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~-~~-~--  348 (449)
                            .. +   +   ++...|.+.....++.++|..+..+...   +.+.|++.....++..+.-+. ... .. +  
T Consensus       236 ~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~---~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~  312 (433)
T PF03092_consen  236 SASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFS---NWSWRRIFVVTTLVSVLASLFDLLLVTRWNLD  312 (433)
T ss_pred             CccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhcccEEEEEEEeee
Confidence                  11 1   1   1222455554555677888888887776   456666655443333221110 000 00 0  


Q ss_pred             ----hhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHH
Q 013096          349 ----EIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFL  403 (449)
Q Consensus       349 ----~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~  403 (449)
                          +.+..+..-.+..+..++.+-....+.+|..|+...|+.+++.....|++...+-
T Consensus       313 ~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~  371 (433)
T PF03092_consen  313 LGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSS  371 (433)
T ss_pred             eCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHH
Confidence                0011111112334444444444456678999999999999998888887654343

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.23  E-value=1.1e-09  Score=109.35  Aligned_cols=159  Identities=16%  Similarity=0.043  Sum_probs=99.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHH-HhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH-H----
Q 013096           65 LASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGF-SAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK-S----  137 (449)
Q Consensus        65 l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~-~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~-~----  137 (449)
                      +....+.....+.+...+|.|.+++++|.+..... ....++..+.|++.||+|+||.+..+..+.+...+ .. .    
T Consensus       219 l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~  298 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFW  298 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33333433334455556789999999998877654 45566678999999999999998877665533222 11 1    


Q ss_pred             -hcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcch
Q 013096          138 -ITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVP  216 (449)
Q Consensus       138 -~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~  216 (449)
                       .++.+.++..-.+++++.+...+...+....+ ..   +++..++.++..+....++..++|.+++++.+..   |++.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~---~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~---G~~~  371 (390)
T TIGR02718       299 LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRF-AG---DGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF---GYAG  371 (390)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccHH
Confidence             23444455555666666665554443322222 11   1133455666666666777788899999888765   7888


Q ss_pred             hHHHHHHHHHHHHH
Q 013096          217 SSTASVFLSILGII  230 (449)
Q Consensus       217 ~f~~~~~~~~~~~~  230 (449)
                      .|.....+.+++.+
T Consensus       372 ~f~~~~~~~l~a~~  385 (390)
T TIGR02718       372 GFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877666555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.22  E-value=3.6e-09  Score=109.11  Aligned_cols=161  Identities=13%  Similarity=0.144  Sum_probs=98.5

Q ss_pred             hHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH----HHHhcchhHHHHHH
Q 013096           74 SVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV----WKSITAHPSVWVAN  148 (449)
Q Consensus        74 ~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l----~~~~~s~~~l~~~R  148 (449)
                      ..+.|... +++|.++.+.+.......++..++.+..|+++||+|||+++..+.+...+.++    ...+++...++++|
T Consensus       270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (490)
T PRK10642        270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL  349 (490)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34555555 46799888777666777777888889999999999999998877665443222    12235677888899


Q ss_pred             HHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          149 ICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       149 ~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      ++.|++.+...+... .+++|.    +|.+..+...+........+..++|.+.+++.+..  .+|+.+++...+..+++
T Consensus       350 ~~~g~~~~~~~g~~~-~~~~~~----~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~  422 (490)
T PRK10642        350 LMLAVILNCFTGVMA-STLPAM----FPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIG  422 (490)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHH----CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHH
Confidence            999887665444332 234443    34444444444322122233445677777766543  24666766555454444


Q ss_pred             HHHHHhccccCCCC
Q 013096          229 IICVSRGWTENPKM  242 (449)
Q Consensus       229 ~~~i~~~~~e~~~~  242 (449)
                      .+... ..||+++.
T Consensus       423 ~~~~~-~~pes~~~  435 (490)
T PRK10642        423 LITGV-TMKETANR  435 (490)
T ss_pred             HHHHH-HhccccCC
Confidence            44333 45887654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1e-10  Score=106.88  Aligned_cols=342  Identities=12%  Similarity=0.068  Sum_probs=170.6

Q ss_pred             hhhhHHHHHHHHHHHHHhh----hhhHHHHHHH--HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHH-H
Q 013096           53 VPFQRNFLLLFSLASVMEG----LWSVFGEYEL--VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCL-I  124 (449)
Q Consensus        53 ~~~~~~~~~~~~l~~~~~~----~~~~~~~~l~--~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll-~  124 (449)
                      .+.-+|++.+.+....+.+    .+.|-.-..+  ++.+++.++..++++.+..+-.+...++|.+.||. |-|-.-+ .
T Consensus        37 S~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~  116 (459)
T KOG4686|consen   37 SALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL  116 (459)
T ss_pred             hhhhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence            3555666666554444432    2345332332  35666667788889999888888788999999974 4433322 2


Q ss_pred             HHHHHH---HHHHHHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHH--hhcCChhhHHHHHHHHHHHhHHHH----
Q 013096          125 FFILHL---FVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHE--KQGQRQDILSDTFWLMTFFESAAL----  195 (449)
Q Consensus       125 ~~~~~~---~~~l~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~--~r~~~~~~l~~~~~~~~~~~~~~~----  195 (449)
                      ++.++.   +...-...+++|.+..+|++.|+|.-..       .+.+..  .-.+++++++-+++......-++.    
T Consensus       117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESl-------AVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf  189 (459)
T KOG4686|consen  117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESL-------AVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNF  189 (459)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhh-------hhhhcceeEEEecCccccchhhHHHHHHHhhceeee
Confidence            322222   1112235689999999999999986322       222221  123566777777775332221111    


Q ss_pred             HHHHHHHHHHhcccccCCcc-----hhHHH-HHHHHHHHHHHHHhccccCCCCCcchh-------hhhhhHhhhc-ChhH
Q 013096          196 IGGQVLANWLVGIDVKKGVV-----PSSTA-SVFLSILGIICVSRGWTENPKMAFDDY-------RTSFFTYIFG-DKRI  261 (449)
Q Consensus       196 i~a~~lg~~l~~~~~~~g~~-----~~f~~-~~~~~~~~~~~i~~~~~e~~~~~~~~~-------~~~~~~~l~~-~~~~  261 (449)
                      .+-|.+.......+++.|-.     ..|-. .....+++...  ..+.+.+. |+.-+       +...+.++.. .|.+
T Consensus       190 ~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~--lg~~D~rA-erilh~e~g~~Ge~pkLtdv~~f~ppf  266 (459)
T KOG4686|consen  190 LLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALS--LGLSDDRA-ERILHLEEGFLGEEPKLTDVNTFYPPF  266 (459)
T ss_pred             eecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHH-HHHHhhhcCcccCCcccccccccCccH
Confidence            12233333222211111100     01110 00111122111  11211110 10000       0001112211 2677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHH-H
Q 013096          262 WLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVL-G  337 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~-~  337 (449)
                      |.+.+...+...+.+-|+. ..|.+.++  | ++.+.+-+.+..-.-..+-+...+.++|   +.|+.-.++....+. -
T Consensus       267 w~~~iicv~yyva~fPFi~-lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D---k~G~n~~wv~~a~~~tl  342 (459)
T KOG4686|consen  267 WVLVIICVLYYVAWFPFIT-LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD---KYGFNLWWVASACILTL  342 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhh-hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh---hhcceehhHHHHHHHHH
Confidence            7777666665555555543 35655554  2 3444454444333344566778889999   566554444322111 1


Q ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhh
Q 013096          338 FVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRN  411 (449)
Q Consensus       338 ~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~  411 (449)
                      .+-....++..++   ...+++.+....+...+.+..+...+|+++-||++|..+...|++....++. |.+.++
T Consensus       343 ~~H~~l~Ft~lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~  414 (459)
T KOG4686|consen  343 LGHSGLFFTFLSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG  414 (459)
T ss_pred             HHhhhHHhhhccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence            1112222222222   2344444554444444455566778899999999999999999986555554 433344

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.16  E-value=2.2e-09  Score=106.59  Aligned_cols=143  Identities=15%  Similarity=0.123  Sum_probs=93.6

Q ss_pred             hhHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH---HHHH--hcchhHHHH
Q 013096           73 WSVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG---VWKS--ITAHPSVWV  146 (449)
Q Consensus        73 ~~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~---l~~~--~~s~~~l~~  146 (449)
                      ...+.+... +++|.++.+.+.......+...++.++.|+++||+|||+.++....+..+.+   +...  .++.+.+..
T Consensus       238 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (394)
T TIGR00883       238 ITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFF  317 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            345556655 4688999999988888888888999999999999999998775544433322   1222  246777778


Q ss_pred             HHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHH-HHHHhHHHHHHHHHHHHHHhcccccCC-cchhHHHHHH
Q 013096          147 ANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWL-MTFFESAALIGGQVLANWLVGIDVKKG-VVPSSTASVF  223 (449)
Q Consensus       147 ~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~-~~~~~~~~~i~a~~lg~~l~~~~~~~g-~~~~f~~~~~  223 (449)
                      ..++.|++.+...+...+ ++.|..    |++..++.++. ....+.++..++|.+++++.+..   | |+..++..+.
T Consensus       318 ~~~~~g~~~~~~~~~~~~-~~~~~~----p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~---g~~~~~~~~~~~  388 (394)
T TIGR00883       318 LVLGLALIGGMYTGPMGS-FLPELF----PTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT---GDWYAIGYYLAA  388 (394)
T ss_pred             HHHHHHHHHHHHhhhHHH-HHHHhC----CccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc---CcchhHHHHHHH
Confidence            888899888776665543 444442    22223333333 23334455667888888888765   4 6666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00897 2A0118 polyol permease family

Probab=99.14  E-value=1.6e-08  Score=101.62  Aligned_cols=146  Identities=10%  Similarity=0.043  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHH-HHHHHHHHHH-HHH-----hcchhHHHHH
Q 013096           75 VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLI-FFILHLFVGV-WKS-----ITAHPSVWVA  147 (449)
Q Consensus        75 ~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~-~~~~~~~~~l-~~~-----~~s~~~l~~~  147 (449)
                      .+.|...+++|.++.+.+.+.....++..++.+..|+++||+|||+.... +.+...+.++ +..     .++.+.+++.
T Consensus       243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  322 (402)
T TIGR00897       243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII  322 (402)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence            34555557899999998887777778889999999999999999987642 2222333222 211     2466777788


Q ss_pred             HHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q 013096          148 NICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSIL  227 (449)
Q Consensus       148 R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~  227 (449)
                      .++.|++.+...+. .+ ...|.     ++++.++.++..+....++..++|.+++.+.+..   ||...|++.+++.++
T Consensus       323 ~~~~G~~~~~~~~~-~~-~~~~~-----~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~---g~~~~~~~~a~~~~i  392 (402)
T TIGR00897       323 AIALGIFLAGYVPL-AA-VFPTL-----APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF---GAIGVVWIFAALYVV  392 (402)
T ss_pred             HHHHHHHHHHHHHH-HH-HHHhh-----CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHH
Confidence            88899888765433 22 33332     2234677788777777777788999999988865   788888877666555


Q ss_pred             HHH
Q 013096          228 GII  230 (449)
Q Consensus       228 ~~~  230 (449)
                      ..+
T Consensus       393 ~~~  395 (402)
T TIGR00897       393 SAF  395 (402)
T ss_pred             HHH
Confidence            443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.13  E-value=5.3e-08  Score=98.42  Aligned_cols=284  Identities=13%  Similarity=0.103  Sum_probs=154.8

Q ss_pred             HHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhHHHHhhhhhH-HHHHHHHHhhcCCh
Q 013096           99 FSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFE-TWVAIEHEKQGQRQ  177 (449)
Q Consensus        99 ~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~~~~s~~~l~~~R~l~Glg~~~~~~~~~-a~~v~~~~~r~~~~  177 (449)
                      .+...+.++..|.++||+|||..+........+..++...+. |++++   +.|+..+.....+. -.+++|.    ...
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadi----s~~  143 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADI----SSE  143 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeec----cch
Confidence            456678889999999999999999988777666555444444 34433   55554432211111 1133332    223


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCCCcch-----------
Q 013096          178 DILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKMAFDD-----------  246 (449)
Q Consensus       178 ~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~~~~-----------  246 (449)
                      +.....++........+..++|.+++.+....   |.-.+|.++.+...+.....+...||+..+++++           
T Consensus       144 ~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~---~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~  220 (463)
T KOG2816|consen  144 EERSSSIGLLSGTFGAGLVIGPALGGYLVKFL---GIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGS  220 (463)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCc
Confidence            34445555555444455667888888887765   6667898888888888777777788876542211           


Q ss_pred             ----hhhhhhHhhhc--C-hhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHH-H
Q 013096          247 ----YRTSFFTYIFG--D-KRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFP-W  315 (449)
Q Consensus       247 ----~~~~~~~~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~-~  315 (449)
                          +..+.++...+  + |..+.+.+...+....-..-..--.+.++..  + +..+++...+.......++..+.. .
T Consensus       221 ~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~  300 (463)
T KOG2816|consen  221 LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPL  300 (463)
T ss_pred             ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11222332222  2 3333333222111100000000001122221  1 234455444444444444444443 4


Q ss_pred             HhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHH
Q 013096          316 LISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPA  395 (449)
Q Consensus       316 l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~  395 (449)
                      +..   .++.++.+..++..-.+.....++..+ .|... .-.......+...|+..+..+...++|.||++.++.....
T Consensus       301 l~~---~l~~~~~i~lGl~~~~~~~~~~af~~~-~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~  375 (463)
T KOG2816|consen  301 LSS---ILGEKRLISLGLLSEFLQLLLFAFATE-TWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIE  375 (463)
T ss_pred             HHH---HHhhhhHhhHHHHHHHHHHHHHHHhcc-chhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHH
Confidence            443   455566555555444444444444432 23322 2233445566778999999999999999999999887766


Q ss_pred             HHH
Q 013096          396 NAA  398 (449)
Q Consensus       396 ~~~  398 (449)
                      .+.
T Consensus       376 ~l~  378 (463)
T KOG2816|consen  376 GLS  378 (463)
T ss_pred             HHh
Confidence            654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.13  E-value=8.2e-09  Score=110.13  Aligned_cols=137  Identities=13%  Similarity=0.029  Sum_probs=101.3

Q ss_pred             HHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhh
Q 013096           95 LCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQ  173 (449)
Q Consensus        95 ~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r  173 (449)
                      ..+..++..++.++.|+++||+|||++++.+.++.+++++ ..+.++...+++.+++.|+..+...+...+ +++|.   
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a-~~aEl---  676 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDV-LTVEL---  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---
Confidence            3444567778889999999999999999999888888765 667778888888899888877766655433 44544   


Q ss_pred             cCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCC
Q 013096          174 GQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPK  241 (449)
Q Consensus       174 ~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~  241 (449)
                       +|.+..++.++.......++.+++|.+++.+...    +...+|.+.+++.+++.++.. .+||+++
T Consensus       677 -~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~-~LPET~~  738 (742)
T TIGR01299       677 -YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLAL-KLPDTRG  738 (742)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHH-hCCCCcc
Confidence             5666677888888878888889999998877653    334678776666555555444 4588765

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.11  E-value=1e-08  Score=102.27  Aligned_cols=141  Identities=6%  Similarity=-0.008  Sum_probs=91.8

Q ss_pred             HHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH-HhcchhHHHHHHHHHHhH
Q 013096           78 EYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK-SITAHPSVWVANICLSLA  154 (449)
Q Consensus        78 ~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~-~~~s~~~l~~~R~l~Glg  154 (449)
                      ++.++ .+|.++.+.+...+...++..++.++.|+++||+|||+.+..+..+.+++.+ .. ..++.+..++..++.+.+
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g  302 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG  302 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            33444 5899999999888888888999999999999999999999888777666553 32 344555666666666666


Q ss_pred             HHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH
Q 013096          155 SSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSI  226 (449)
Q Consensus       155 ~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~  226 (449)
                      .....+........    +..+++..+...+  .....++..+||.+++++.+..  .+|+..+.+.+...+
T Consensus       303 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~  366 (382)
T PRK10091        303 LFALSAPLQILLLQ----NAKGGELLGAAGG--QIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSF  366 (382)
T ss_pred             HHhhhHHHHHHHHH----hCCcchHHHHHHH--HHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHH
Confidence            54433332222221    1223333443322  2334566778888899888753  377788887654433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.08  E-value=4.8e-09  Score=107.13  Aligned_cols=146  Identities=18%  Similarity=0.085  Sum_probs=101.9

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh--CchHHHHHH--HHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           76 FGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI--GQKKVCLIF--FILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        76 ~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~--GRr~~ll~~--~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      +.+...+++|.++.+.+.+.+...++..+++++.|.++||.  ++|+..+..  .+..++..+ +...++++.+++.+++
T Consensus       263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~  342 (455)
T TIGR00892       263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIF  342 (455)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            44555578899999999888888888888899999999984  344443333  233333333 4567889999999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      .|++.+...+...+ .+.|.    .++++.++.++..+....++.+++|.+++++.+..  .+|+..|++.++..+++
T Consensus       343 ~G~~~g~~~~~~~~-~~~~~----~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~--g~~~~~f~~~~~~~li~  413 (455)
T TIGR00892       343 FGLSFGSVGALLFE-VLMDL----VGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT--KNYKYIFYASGSIVVSA  413 (455)
T ss_pred             HHHHhchHHHHHHH-HHHHH----hhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc--CCcchHHHHhhHHHHHH
Confidence            99998876665444 33333    24445667777777777778888999999887654  15788888765544444

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.08  E-value=1.4e-08  Score=101.98  Aligned_cols=122  Identities=7%  Similarity=-0.142  Sum_probs=85.0

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHH-----hcchhHHHHHHHHHHhHH
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKS-----ITAHPSVWVANICLSLAS  155 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~-----~~s~~~l~~~R~l~Glg~  155 (449)
                      +++|.++.+.+........+..++.++.|+++||+|||+.+..+.++..++.+ ...     .++.+.+++.-++.|+|.
T Consensus       244 ~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~  323 (406)
T PRK15402        244 SGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGI  323 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence            46899999988777766677788889999999999999998887766655433 222     235667788889999998


Q ss_pred             HHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          156 SIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       156 ~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      +...+...... .. .    .+++.++..+..+.....+..+|+.+++++.+..
T Consensus       324 ~~~~~~~~~~~-~~-~----~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        324 GLANAGLYRLT-LF-S----SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             HHHhhhHHHHH-hh-h----ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            87665543321 11 1    1134556677666666666677888888876643

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.07  E-value=2.9e-08  Score=102.40  Aligned_cols=144  Identities=15%  Similarity=0.140  Sum_probs=91.0

Q ss_pred             HHhCCChHHHHHHH-HHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH----HHHh-cchhHHHHHHHHHHhHH
Q 013096           82 VYYGVAKEQMMLLL-CAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV----WKSI-TAHPSVWVANICLSLAS  155 (449)
Q Consensus        82 ~~~g~s~~~ig~l~-~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l----~~~~-~s~~~l~~~R~l~Glg~  155 (449)
                      +++|.|+++++.+. ..+.++..++.++.|+++||+||||.+..+.++..+..+    .... ++.+.+...-+++.+..
T Consensus       251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~  330 (491)
T PRK11010        251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCG  330 (491)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            56899999999887 466778889999999999999999988776555444332    1222 45555555555655444


Q ss_pred             HHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHH
Q 013096          156 SIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVS  233 (449)
Q Consensus       156 ~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~  233 (449)
                      +...++..+ +..+..++.++..    .++..+....++.++++.+.+++.+..   ||+..|.+..++.+.+.+...
T Consensus       331 g~~~~~~~a-~~~~l~~~~~~~t----~~gl~~s~~~lg~~~~~~~~G~l~~~~---G~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        331 GMGTAAFVA-LLMTLCNKSFSAT----QFALLSALSAVGRVYVGPVAGWFVEAH---GWPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHHHHHH-HHHHHcCCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHH
Confidence            443433322 3333434444433    344444444555566666788887765   888888877666666544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.07  E-value=1.6e-08  Score=100.10  Aligned_cols=148  Identities=11%  Similarity=0.009  Sum_probs=90.3

Q ss_pred             hHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchH--HHHHH---HHHHHHHHHHH----HhcchhH
Q 013096           74 SVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK--VCLIF---FILHLFVGVWK----SITAHPS  143 (449)
Q Consensus        74 ~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~--~ll~~---~~~~~~~~l~~----~~~s~~~  143 (449)
                      ..+.+... +++|.|+.+.+.+.+...+...++.++.|+++||+|||+  .....   .....+.++..    ..++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (399)
T TIGR00893       235 LTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYA  314 (399)
T ss_pred             HHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            34444444 468999999998888888888999999999999999997  21111   11111111111    1224444


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCC-cchhHHHHH
Q 013096          144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKG-VVPSSTASV  222 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g-~~~~f~~~~  222 (449)
                      ....-.+.+.+.+ ..+...+ ++.|.    .++++.++.++.......++..++|.+.+++.+..   | |+..|.+..
T Consensus       315 ~~~~~~~~~~~~~-~~~~~~~-~~~~~----~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~---g~~~~~~~~~~  385 (399)
T TIGR00893       315 ALALVALGFFGLG-AGAIGWA-LISDN----APGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT---GSFAGALMVVA  385 (399)
T ss_pred             HHHHHHHHHhchh-hhhHHHH-HHHhh----cChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC---CchhHHHHHHH
Confidence            4444444444443 3333322 33333    45556677888777777777888899999888754   5 777787765


Q ss_pred             HHHHHHHH
Q 013096          223 FLSILGII  230 (449)
Q Consensus       223 ~~~~~~~~  230 (449)
                      ...+++.+
T Consensus       386 ~~~~~~~~  393 (399)
T TIGR00893       386 ALALIGAL  393 (399)
T ss_pred             HHHHHHHH
Confidence            55544433

>PRK09952 shikimate transporter; Provisional

Probab=99.06  E-value=6e-08  Score=98.63  Aligned_cols=152  Identities=8%  Similarity=-0.040  Sum_probs=89.2

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHH---h-cchhHHHHHHHHHHhHHH
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKS---I-TAHPSVWVANICLSLASS  156 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~---~-~s~~~l~~~R~l~Glg~~  156 (449)
                      +++|.++.+...+.........++.++.|+++||+||||+++.+.++..++.+ +..   . ++.+.+++.-++.|++.+
T Consensus       279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  358 (438)
T PRK09952        279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD  358 (438)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            46788887654444444455667788999999999999998877665444332 211   2 234444555666677776


Q ss_pred             HhhhhhHHHHHHHHHhhcCChhhHHHHHHHH-HHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhc
Q 013096          157 IFSFNFETWVAIEHEKQGQRQDILSDTFWLM-TFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRG  235 (449)
Q Consensus       157 ~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~-~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~  235 (449)
                      ...+...+ +++|.    +|.+..+...+.. ..+..++..++|.+.+++.+.. +.+|+.++.......+++.+... .
T Consensus       359 ~~~~~~~~-~~~e~----~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~-~~~~~~~~~~~~~~~~i~~v~~~-~  431 (438)
T PRK09952        359 MVVCVQQP-MFTEM----FGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF-GGSWHSVAIYLLAGCLISAMTAL-L  431 (438)
T ss_pred             HHHHHHHH-HHHHH----CCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHH-H
Confidence            55544433 34444    2333333333332 2333355667888888887643 23577777766666555544333 3


Q ss_pred             cccCC
Q 013096          236 WTENP  240 (449)
Q Consensus       236 ~~e~~  240 (449)
                      ++|++
T Consensus       432 ~~~~~  436 (438)
T PRK09952        432 MKDNQ  436 (438)
T ss_pred             ccccc
Confidence            46654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.05  E-value=2.4e-08  Score=100.27  Aligned_cols=146  Identities=11%  Similarity=0.060  Sum_probs=88.9

Q ss_pred             HHHHhCCChHHHHHHHHH-HHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-H---HHh-cchhHHHHHHHHHHh
Q 013096           80 ELVYYGVAKEQMMLLLCA-GFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-W---KSI-TAHPSVWVANICLSL  153 (449)
Q Consensus        80 l~~~~g~s~~~ig~l~~~-~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~---~~~-~s~~~l~~~R~l~Gl  153 (449)
                      +.+++|.++++++.+... +..+..++.++.|++.||+|||+.+..+.....+.++ .   ... ++.+.+.+.-+++++
T Consensus       236 l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  315 (402)
T PRK11902        236 LIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENL  315 (402)
T ss_pred             HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            345689999999987654 4556778889999999999999998777666555432 1   233 456666665555444


Q ss_pred             HHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHH
Q 013096          154 ASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVS  233 (449)
Q Consensus       154 g~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~  233 (449)
                      ..+.......+. .....++.++.++.+.    .+...+++.+.++.+++++.+..   ||+..|.+.+.+.+++.+++.
T Consensus       316 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~---G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        316 CGGMGTAAFVAL-LMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAY---GWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHH-HHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHH
Confidence            433332222211 1112233445444432    22223344444556788888765   888889888777766655444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.05  E-value=1.9e-08  Score=98.71  Aligned_cols=128  Identities=15%  Similarity=0.055  Sum_probs=96.4

Q ss_pred             HHHHHHHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhc-chhHHHHHHHHHH
Q 013096           76 FGEYELVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSIT-AHPSVWVANICLS  152 (449)
Q Consensus        76 ~~~~l~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~-s~~~l~~~R~l~G  152 (449)
                      ..|...++ +|.++.+.+.+.....++..++.++.|++.||+|||+.+..+..+.++... ....+ +.+.+.+..++.|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (365)
T TIGR00900       233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIG  312 (365)
T ss_pred             HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence            34444444 799999999888888888889999999999999999998887666665554 44455 4888889999999


Q ss_pred             hHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 013096          153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGI  208 (449)
Q Consensus       153 lg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~  208 (449)
                      ++.+...+...+ ++.|.    .++++.++..+.......++..++|.+++++.+.
T Consensus       313 ~~~~~~~~~~~~-~~~~~----~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       313 VGYGPINVPQGT-LLQRR----VPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHH-HHHHh----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998876665443 33332    4556677888887777777777888888887653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.03  E-value=6.2e-08  Score=97.09  Aligned_cols=138  Identities=13%  Similarity=0.003  Sum_probs=90.9

Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHH-HH-HHHhcchhHHHHHHHHHHhHHH
Q 013096           79 YELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFV-GV-WKSITAHPSVWVANICLSLASS  156 (449)
Q Consensus        79 ~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~-~l-~~~~~s~~~l~~~R~l~Glg~~  156 (449)
                      .+.+++|.++.+.+.++....++..++.++.|++.||.+ |+.++.+..+.... .+ ....++.+.+.+..++.|++.+
T Consensus       242 ~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~  320 (394)
T PRK10213        242 VYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFA  320 (394)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            334578999999998888777888888999999999964 45444444443332 33 2345677888888899999888


Q ss_pred             HhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH
Q 013096          157 IFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSI  226 (449)
Q Consensus       157 ~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~  226 (449)
                      ...+..++++ .+.    .+ ++.++..+.......++..+|+.+++++.+..   |++..+.......+
T Consensus       321 ~~~~~~~~~~-~~~----~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~---g~~~~~~~~~~~~~  381 (394)
T PRK10213        321 LVPVGWSTWI-TRS----LA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI---GLTSPLMLSGTLML  381 (394)
T ss_pred             hhhHHHHHHH-HHH----Cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ChhhHHHHHHHHHH
Confidence            7666655433 222    22 12333444444445566778899999988754   77777777654433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.02  E-value=3.5e-08  Score=96.54  Aligned_cols=215  Identities=13%  Similarity=-0.011  Sum_probs=124.8

Q ss_pred             eecCCccchhHHHHHHHH-HHHHHHhhcccccCCCCCCCCCCCCCCCcchhhhHHHH----HHHHHHHHHhhhhhHHH-H
Q 013096            5 IESPFGNRVHFLYIFIFL-SCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVPFQRNFL----LLFSLASVMEGLWSVFG-E   78 (449)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~-~   78 (449)
                      -|...||.+..+...+.+ +.+..+..+|  ++. ...++. ......++-+++.-+    ...++...+....-.|+ |
T Consensus       161 g~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~-~~~~~~-~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P  236 (394)
T COG2814         161 GQLFGWRATFLAIAVLALLALLLLWKLLP--PSE-ISGSLP-GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRP  236 (394)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-CCCCCC-cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHH
Confidence            467789998888776666 5555666667  111 111110 111112233332222    22223333322222233 3


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH--HHHhcchhHHHHHHHHHHhHHH
Q 013096           79 YELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV--WKSITAHPSVWVANICLSLASS  156 (449)
Q Consensus        79 ~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l--~~~~~s~~~l~~~R~l~Glg~~  156 (449)
                      .+.+..|+|+++++++...+-++..++....|+++|| +.|+.+.....+..+..+  ....++.+..++.-++.|++.+
T Consensus       237 ~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~  315 (394)
T COG2814         237 FLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFS  315 (394)
T ss_pred             HHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            4445789999999999888889999999999999999 999998887777666543  3344566666666677666654


Q ss_pred             HhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHH
Q 013096          157 IFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVS  233 (449)
Q Consensus       157 ~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~  233 (449)
                      ...   +.+. .+..+ . .+|....+.+.......++..+|..+|+.+.+++   |+....+.++.+.+++..+..
T Consensus       316 ~~~---~~~~-~~~a~-~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~---g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         316 PAL---QGLQ-TRLAR-L-APDAADLAGSLNVAAFNLGIALGAALGGLVLDAL---GYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             hhh---hHHH-HHhcc-c-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHHHHHHH
Confidence            332   2222 22222 1 1122233444444444444456677788887765   888888888777666655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.02  E-value=1.2e-08  Score=104.04  Aligned_cols=158  Identities=12%  Similarity=-0.072  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH---H--hc------chh
Q 013096           75 VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK---S--IT------AHP  142 (449)
Q Consensus        75 ~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~---~--~~------s~~  142 (449)
                      .+.+.+.+++|.+..+.+.......+...++.++.|+++||+|||+.+..+.++..++.+ ..   .  .+      +..
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNV  384 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHH
Confidence            344556678899987777777777788888899999999999999999888766655543 22   1  11      222


Q ss_pred             HHHHHHHHHHhHHHHh-hhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHH
Q 013096          143 SVWVANICLSLASSIF-SFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTAS  221 (449)
Q Consensus       143 ~l~~~R~l~Glg~~~~-~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~  221 (449)
                      .+.... +.+.+.+.. .+... .+..|.    .+++..+...+.......++.+++|.+.+++.+..   +|++.|++.
T Consensus       385 ~~~~~~-~~~~~~~~~~~~~~~-~~~~~~----~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~---~~~~~f~~~  455 (481)
T TIGR00879       385 AIVFIL-LFIAFFAMGWGPVPW-VIVSEI----FPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI---GVGGVFIFF  455 (481)
T ss_pred             HHHHHH-HHHHHHHccccCeeh-hhhhcc----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CccceehhH
Confidence            222222 222222211 12221 122332    45555667777766667777778888888877654   777888876


Q ss_pred             HHHHHHHHHHHHhccccCCC
Q 013096          222 VFLSILGIICVSRGWTENPK  241 (449)
Q Consensus       222 ~~~~~~~~~~i~~~~~e~~~  241 (449)
                      +.+.+++.+...+..||+++
T Consensus       456 ~~~~~~~~i~~~~~~~~~~~  475 (481)
T TIGR00879       456 GGLNVLGLIFVYFFLPETKG  475 (481)
T ss_pred             HHHHHHHHHHHheecccCCC
Confidence            66655555545445566554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00896 CynX cyanate transporter

Probab=99.01  E-value=7.2e-08  Score=94.99  Aligned_cols=131  Identities=11%  Similarity=-0.023  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHH
Q 013096           74 SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICL  151 (449)
Q Consensus        74 ~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~  151 (449)
                      ..+.|...++.|.|+.+.+.+.+...++..+++++.|+++||+ +||+.+..+.++..++.+ +...++..... .-++.
T Consensus       217 ~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  295 (355)
T TIGR00896       217 IGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL  295 (355)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence            3456666778899999999998888889999999999999999 566666676666665543 33433322222 44678


Q ss_pred             HhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          152 SLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       152 Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      |++.+...+...+....+    ..++++.+...+.......++..++|.+.+++.+..
T Consensus       296 g~~~g~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       296 GLGQGGAFPLALTLIGLR----SRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             HHhhhhHhHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999887776654432221    112233444555544444455567888888888765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.98  E-value=4.3e-06  Score=82.46  Aligned_cols=330  Identities=11%  Similarity=-0.020  Sum_probs=180.0

Q ss_pred             hhHHHHHHHHHHHHHhhh-hhHHHHHHH-H-HhCCChHHHH-HHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHH
Q 013096           55 FQRNFLLLFSLASVMEGL-WSVFGEYEL-V-YYGVAKEQMM-LLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHL  130 (449)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~-~~~~~~~l~-~-~~g~s~~~ig-~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~  130 (449)
                      |++....++..+.+-+.= .-||+.+.. + +.|++++|+. -++-...-+.+..-++...++|..|.||+++.+.+...
T Consensus         3 w~~~~~llc~~gf~~~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i   82 (412)
T PF01770_consen    3 WKKITLLLCLFGFFKEFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI   82 (412)
T ss_pred             chHHHHHHHHHHHHHhcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            334444444444333211 135553333 3 4899999877 45555555666666789999999999999999888876


Q ss_pred             HHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          131 FVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       131 ~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      +.-. ..+.++...+-+..+.-|++.+....-. + ++...    .++++..++-+..-....++-.++.++|..+....
T Consensus        83 ~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~-s-Yiys~----v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~  156 (412)
T PF01770_consen   83 ITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYY-S-YIYSV----VDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG  156 (412)
T ss_pred             HHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHH-H-Hheee----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6543 5667999999999999999987643221 1 22111    23333444444433333344456667777666532


Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHhccccCCC-------------------C------Ccc-----h------hh-----
Q 013096          210 VKKGVVPSSTASVFLSILGIICVSRGWTENPK-------------------M------AFD-----D------YR-----  248 (449)
Q Consensus       210 ~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~-------------------~------~~~-----~------~~-----  248 (449)
                       +.+++....++.....++.++..+ +|..++                   +      ++.     +      ..     
T Consensus       157 -~~sy~~L~~isl~~~~~a~~~~~f-LP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (412)
T PF01770_consen  157 -GVSYFQLNYISLASVSLALLIALF-LPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLR  234 (412)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHH-cCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHH
Confidence             234444555554443333333222 221110                   0      000     0      00     


Q ss_pred             --hhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc----CCCccchHHHHHHHHHHHHHhhhHHHHHhcCCCC
Q 013096          249 --TSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVA----DGREVHLGLIFPSLLGARMLGSTVFPWLISGPSS  322 (449)
Q Consensus       249 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~  322 (449)
                        ...+++..+||+++...+.+++...+.+-...+++.....    +....-.|.+-+...+...+++...+++..++.+
T Consensus       235 ~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~  314 (412)
T PF01770_consen  235 LLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR  314 (412)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH
Confidence              1224455678888776665555544433222222221111    1223345777666666667777888887442212


Q ss_pred             CCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHH
Q 013096          323 FRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAP  394 (449)
Q Consensus       323 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~  394 (449)
                      .+ +..+....++.+.+++++.... ++++....++++....-+..+....-+++....|.-|-++|++.+.
T Consensus       315 ~~-~l~l~~~S~l~a~~L~lm~~t~-~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  315 WG-ELALGVFSLLQAGLLFLMSFTG-NIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHH
Confidence            21 1122222234444455444443 5666667777776666666666666666667777777778776543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.98  E-value=8.8e-08  Score=95.94  Aligned_cols=154  Identities=12%  Similarity=0.024  Sum_probs=97.7

Q ss_pred             HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCc-hHHHHHHHHHHHHHHHHH--H---hc-chhHHHHHHHHHHhHH
Q 013096           83 YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQ-KKVCLIFFILHLFVGVWK--S---IT-AHPSVWVANICLSLAS  155 (449)
Q Consensus        83 ~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GR-r~~ll~~~~~~~~~~l~~--~---~~-s~~~l~~~R~l~Glg~  155 (449)
                      |.+.+.+..|++.++..++.+++.|.+|.++.|.|+ |+.++.+.++..++++..  +   .+ +.+.++++|++.|+|.
T Consensus        65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~  144 (488)
T KOG2325|consen   65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV  144 (488)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence            478888889999999999999999999999999996 677778888888877532  2   23 6899999999999998


Q ss_pred             HHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc-ccC------C---cchhHHHHHHHH
Q 013096          156 SIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID-VKK------G---VVPSSTASVFLS  225 (449)
Q Consensus       156 ~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~-~~~------g---~~~~f~~~~~~~  225 (449)
                      +..... - .++++..    ..++..++++..+.+..++.++||.++..+.... +++      .   +..|-++.++..
T Consensus       145 ~n~a~l-R-~Y~a~~s----~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~  218 (488)
T KOG2325|consen  145 GNFAVL-R-AYIADAS----TVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILW  218 (488)
T ss_pred             ccHHHH-H-HHHHhcc----CccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHH
Confidence            764322 2 2444331    1112334555444444445555555554443211 010      1   123455566665


Q ss_pred             HHHHHHHHhccccCCCC
Q 013096          226 ILGIICVSRGWTENPKM  242 (449)
Q Consensus       226 ~~~~~~i~~~~~e~~~~  242 (449)
                      ++..+++....+|...+
T Consensus       219 i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  219 IIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHHHHHHHhheeecccC
Confidence            55555555566776543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.97  E-value=6e-08  Score=99.58  Aligned_cols=159  Identities=12%  Similarity=-0.057  Sum_probs=91.1

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh--cch-h-HHHHHHHH
Q 013096           76 FGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI--TAH-P-SVWVANIC  150 (449)
Q Consensus        76 ~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~--~s~-~-~l~~~R~l  150 (449)
                      +.|.++++.|.+..+.+.......+...++.++.|+++||+|||++++.+.++.+++.+ ....  ++. + .....-++
T Consensus       293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~  372 (479)
T PRK10077        293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF  372 (479)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            44667778888876655555555566778889999999999999999998887776553 2221  221 1 22223333


Q ss_pred             HHhHHHHhh-hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHH----HHHH--HHHhcccccCCcchhHHHHHH
Q 013096          151 LSLASSIFS-FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGG----QVLA--NWLVGIDVKKGVVPSSTASVF  223 (449)
Q Consensus       151 ~Glg~~~~~-~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a----~~lg--~~l~~~~~~~g~~~~f~~~~~  223 (449)
                      .+.+.+... +... .++.|.    ++.+..+.+.+.....+.++.+++    |.+.  +++.+.   ++|+..|.+...
T Consensus       373 ~~~~~~~~~~~~~~-~~~~e~----~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~  444 (479)
T PRK10077        373 YVAAFAMSWGPVCW-VLLSEI----FPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH---FHNGFSYWIYGC  444 (479)
T ss_pred             HHHHHhccccchhH-HHhHhh----CChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh---ccCccHHHHHHH
Confidence            444433221 2222 233433    455556666666555444444444    3333  233333   367778877665


Q ss_pred             HHHHHHHHHHhccccCCCC
Q 013096          224 LSILGIICVSRGWTENPKM  242 (449)
Q Consensus       224 ~~~~~~~~i~~~~~e~~~~  242 (449)
                      ..+++.++.+...||++++
T Consensus       445 ~~~~~~~~~~~~~~e~~~~  463 (479)
T PRK10077        445 MGVLAALFMWKFVPETKGK  463 (479)
T ss_pred             HHHHHHHHHHhccccCCCC
Confidence            5555545555556777654

>TIGR00895 2A0115 benzoate transport

Probab=98.97  E-value=8.1e-08  Score=95.48  Aligned_cols=127  Identities=10%  Similarity=0.012  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHH
Q 013096           74 SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWK-SITAHPSVWVANICLS  152 (449)
Q Consensus        74 ~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~-~~~s~~~l~~~R~l~G  152 (449)
                      ..+.|.+.+++|.++.+.+...+...++..++.++.|+++||+|||+.............+.. ..++.+.+++..++.|
T Consensus       270 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  349 (398)
T TIGR00895       270 TNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG  349 (398)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            344555557889999999988888888889999999999999999955544333332222222 2467777888889999


Q ss_pred             hHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013096          153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWL  205 (449)
Q Consensus       153 lg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l  205 (449)
                      ++.+...+...+ ++.|    ..+++..++.++.......++..++|.+++++
T Consensus       350 ~~~~~~~~~~~~-~~~~----~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       350 FFVNGGQSGLYA-LMAL----FYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHH-HHhh----cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            988876665433 2222    24666677788877766667777788777754

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.97  E-value=9.6e-08  Score=96.97  Aligned_cols=150  Identities=10%  Similarity=-0.025  Sum_probs=88.1

Q ss_pred             HHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh--Cc-hHHHHHHHHH--HHHHHHHH-HhcchhHHHHH
Q 013096           75 VFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI--GQ-KKVCLIFFIL--HLFVGVWK-SITAHPSVWVA  147 (449)
Q Consensus        75 ~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~--GR-r~~ll~~~~~--~~~~~l~~-~~~s~~~l~~~  147 (449)
                      .+.|... +++|.|+.+.+...+...++..++.++.|+++||+  +| |+......+.  ....++.. ...+...+...
T Consensus       264 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (434)
T PRK11663        264 DWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC  343 (434)
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            3445555 46799999988888888888899999999999999  33 3332221111  11111111 12233333333


Q ss_pred             HHHHHhHHHHhhhh-hHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH
Q 013096          148 NICLSLASSIFSFN-FETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSI  226 (449)
Q Consensus       148 R~l~Glg~~~~~~~-~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~  226 (449)
                      .+..|++..  .+. ...+.+.|.    .+.+..+...+..+..+.++..++|.+.+++.+..   ||+..|...+.+.+
T Consensus       344 ~~~~g~~~~--~~~~~~~~~~~~~----~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~---g~~~~f~~~~~~~~  414 (434)
T PRK11663        344 FFTIGFFVF--GPQMLIGMAAAEC----SHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW---HWTGFFVVISIAAG  414 (434)
T ss_pred             HHHHHHHHh--hHHHHHHHHHHhc----ccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc---ccHHHHHHHHHHHH
Confidence            344443221  111 112233332    34556677788777777777788888888888765   78888887666555


Q ss_pred             HHHHHHH
Q 013096          227 LGIICVS  233 (449)
Q Consensus       227 ~~~~~i~  233 (449)
                      +..+...
T Consensus       415 ~~~~~~~  421 (434)
T PRK11663        415 ISALLLL  421 (434)
T ss_pred             HHHHHHH
Confidence            5443333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.97  E-value=2.9e-08  Score=101.92  Aligned_cols=177  Identities=15%  Similarity=0.104  Sum_probs=115.0

Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC----C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCchhHH
Q 013096          256 FGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD----G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSS-FRTEDCL  329 (449)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~-~~~~~~l  329 (449)
                      +++|+.+.......+.+...++.+..+.|.++.+    + +..+.|.+.+.+..+..+++.+.|++.|   | ++++|.+
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laD---r~~G~~~~l   82 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGD---RVWGTKKTM   82 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH---hhcchHHHH
Confidence            4566555444444444433344344567777643    2 3456788888888899999999999999   6 7988888


Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcc---hhHHHHhhHHHHHHHHHHHHHHh
Q 013096          330 LYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNEL---RGGMISLSLAPANAAILLFLLLR  406 (449)
Q Consensus       330 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~---rg~~~~~~~~~~~~~~~~~~~~g  406 (449)
                      ..+..+.+++........ +.+.......+.+++.|+..|+..++..+.+|+++   |++++++.+...|++...++..+
T Consensus        83 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~  161 (475)
T TIGR00924        83 VLGGIVLMLGHFMLAMSI-YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLA  161 (475)
T ss_pred             HHHHHHHHHHHHHHHhcc-cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHH
Confidence            777766666555444433 22333445556677888888999999999988764   88899999988898876666554


Q ss_pred             HHh-hhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013096          407 GFY-RNIENAAMVAFAALGLFIAAGCMHVLK  436 (449)
Q Consensus       407 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~  436 (449)
                      ++. ++.+....+..+++..+++.......+
T Consensus       162 g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       162 GVIAENYGYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence            444 445665555544444443433333333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.96  E-value=6.6e-08  Score=99.76  Aligned_cols=139  Identities=8%  Similarity=-0.061  Sum_probs=90.6

Q ss_pred             HHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh--cchhHHHHHHHH
Q 013096           75 VFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI--TAHPSVWVANIC  150 (449)
Q Consensus        75 ~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~--~s~~~l~~~R~l  150 (449)
                      ++.|... +++|.++.+.+.+.+...++..+++++.|+++||+|||++++.+..+..+..+ ....  ++.+.+.+..++
T Consensus       296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (496)
T PRK03893        296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF  375 (496)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            3455555 48899999999999999899999999999999999999998877665554433 2222  344444444554


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTAS  221 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~  221 (449)
                      .+.......+...+ ++.|.    .++++.++.++.......++..++|.+++.+.+.+   ||+..+...
T Consensus       376 ~~~~~~~~~~~~~~-~~~~~----~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~---g~~~~~~~~  438 (496)
T PRK03893        376 QQMLGQGISGLLPK-LIGGY----FDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL---DLGTALASL  438 (496)
T ss_pred             HHHHhcccchhhHH-HHHhh----CCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC---ChHHHHHHH
Confidence            44332222222222 22322    34555666777666566677778899999888765   776666543

>PRK10054 putative transporter; Provisional

Probab=98.94  E-value=6.6e-08  Score=96.92  Aligned_cols=157  Identities=13%  Similarity=0.085  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHH
Q 013096          260 RIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVL  336 (449)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~  336 (449)
                      +++.+.+...+...+.+ ....+.|.++++  + +..+.|+..+...++..++....|++.|   |+++|+.+..+..+.
T Consensus         8 ~~~~l~~~~~~~~~g~~-~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D---r~g~k~~~~~~~~~~   83 (395)
T PRK10054          8 STSALLASSLLLTIGRG-ATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILAD---KFDKKRYMLLAITAF   83 (395)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCcchhHHHHHHHH
Confidence            34444333334333322 223345655543  3 4566888888888888899999999999   788888766655444


Q ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhcchhH
Q 013096          337 GFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAA  416 (449)
Q Consensus       337 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  416 (449)
                      ++......+.+ +.+..+...++.+.+.+...|...++..|..|+++|++++|+.+...+++...++..+++..+.+...
T Consensus        84 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~  162 (395)
T PRK10054         84 ASGFIAIPLVN-NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINL  162 (395)
T ss_pred             HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            44443333333 23333333444455556667888888899999999999999998888887665665555543444444


Q ss_pred             HHHHH
Q 013096          417 MVAFA  421 (449)
Q Consensus       417 ~~~~~  421 (449)
                      .+...
T Consensus       163 ~f~~~  167 (395)
T PRK10054        163 PFWLA  167 (395)
T ss_pred             HHHHH
Confidence            44333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.93  E-value=1.4e-07  Score=94.44  Aligned_cols=136  Identities=12%  Similarity=0.012  Sum_probs=91.5

Q ss_pred             CCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhH
Q 013096           85 GVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFE  163 (449)
Q Consensus        85 g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~  163 (449)
                      +.+..+.|.+.+...+...++.+..|++.||+|||+.+.++.++.++... ...++|.+.+++.++++|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666778888888778788888999999999999999888887777554 35678899999999999988654332211


Q ss_pred             HHHHHHHHhhcCChhhHHHHHHH-HHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          164 TWVAIEHEKQGQRQDILSDTFWL-MTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       164 a~~v~~~~~r~~~~~~l~~~~~~-~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      . +..+.    .+++..+...+. .+....++.++++.+++++.+..   ||+..|.+..+...+.
T Consensus       330 ~-~~~~~----~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~---G~~~~f~~~~~~~~i~  387 (396)
T TIGR00882       330 K-YITSQ----FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI---GFQGAYLVLGCIVLLF  387 (396)
T ss_pred             H-HHHHh----CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc---ccHHHHHHHHHHHHHH
Confidence            1 11111    111111111221 23345566778888899998865   8888888765554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.91  E-value=1.2e-07  Score=95.92  Aligned_cols=130  Identities=13%  Similarity=0.020  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHh
Q 013096           75 VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSL  153 (449)
Q Consensus        75 ~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Gl  153 (449)
                      ...|...++.|.++.+.+...+...++..++.++.|.++||+|||+.+..+.++..+..+ ....++.....+.-.+.|+
T Consensus       252 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (426)
T PRK12307        252 GLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGL  331 (426)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            345565677899999988888888888889999999999999999998887766554433 2222221112222233333


Q ss_pred             HHH--HhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          154 ASS--IFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       154 g~~--~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      +..  ...+.... ++.|    ..|.+..++..+.......++..++|.+.+++.+..
T Consensus       332 ~~~~~~~~~~~~~-~~~~----~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~  384 (426)
T PRK12307        332 MATNVGVGGLVPK-FLYD----YFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM  384 (426)
T ss_pred             HHhcccHhHHHHH-HHHH----hCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence            321  11111111 2222    355666677777666566667778899999887754

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.91  E-value=1.5e-07  Score=96.41  Aligned_cols=148  Identities=13%  Similarity=0.012  Sum_probs=94.7

Q ss_pred             HHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH-H--HHHhcchhHHHHHHHHH
Q 013096           76 FGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG-V--WKSITAHPSVWVANICL  151 (449)
Q Consensus        76 ~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~-l--~~~~~s~~~l~~~R~l~  151 (449)
                      ..|... +++|+|+.+.+...+...++..++.++.|+++||+|||+.+........+.. +  ....++.+.+.+.+++.
T Consensus       280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (467)
T PRK09556        280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL  359 (467)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            344444 4689999999988888888889999999999999999998766544433322 1  22335666777888888


Q ss_pred             HhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHH-HHHHHHHHHHHHhcc-c--------ccCCcchhHHHH
Q 013096          152 SLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESA-ALIGGQVLANWLVGI-D--------VKKGVVPSSTAS  221 (449)
Q Consensus       152 Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~-~~i~a~~lg~~l~~~-~--------~~~g~~~~f~~~  221 (449)
                      |+........... ...|    ..|.+..+.+.+.......+ +..++|.+.+++.+. +        ...+|+..|.+.
T Consensus       360 G~~~~~~~~~~~~-~~~~----~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~  434 (467)
T PRK09556        360 GFLVFGPQLLIGV-AAVG----FVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAAL  434 (467)
T ss_pred             HHHHhhHHHHHHH-HHHh----hcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHH
Confidence            8643221111111 1222    24666677788876655554 556788888888771 0        012688888776


Q ss_pred             HHHHHHH
Q 013096          222 VFLSILG  228 (449)
Q Consensus       222 ~~~~~~~  228 (449)
                      .+..+++
T Consensus       435 ~~~~~~~  441 (467)
T PRK09556        435 DIAAIGC  441 (467)
T ss_pred             HHHHHHH
Confidence            5554444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.90  E-value=9.7e-08  Score=97.40  Aligned_cols=156  Identities=11%  Similarity=0.056  Sum_probs=100.4

Q ss_pred             HHHHHHhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHHhcccchhH
Q 013096          276 ALFWILWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSF-RTEDCLLYAFVVLGFVFSIIAYDYQEIG  351 (449)
Q Consensus       276 ~~~~~~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~  351 (449)
                      ++....+.|.++.+.   ++.+.+.++..+.....++..+.|++.|   |+ |+||.+..+..+.+++............
T Consensus        25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaD---RilGrrr~iliG~il~~lg~lll~~~~~~~~  101 (493)
T PRK15462         25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLAD---KVLGNRMAVMLGALLMAIGHVVLGASEIHPS  101 (493)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccCcHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            333455678776542   3445667777777777889999999999   77 8888877766655554433332211111


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHhccCCCc--chhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHHHHHHHH
Q 013096          352 ILVALFCLFHACVGLILPSLARLRTMYVPNE--LRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAALGLFIA  428 (449)
Q Consensus       352 ~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~--~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~  428 (449)
                      .......+..++.|...|+..++..|.+|++  .|.+++++.....|++...++.. +.+.++.+.+..+..++++.+++
T Consensus       102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~  181 (493)
T PRK15462        102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAG  181 (493)
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Confidence            2223333444667777788888999999976  69999999998888876556555 44445566666665555555554


Q ss_pred             HHHHHH
Q 013096          429 AGCMHV  434 (449)
Q Consensus       429 ~~~~~~  434 (449)
                      .+.+..
T Consensus       182 li~~~~  187 (493)
T PRK15462        182 LVIFLC  187 (493)
T ss_pred             HHHHHH
Confidence            444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.90  E-value=2e-07  Score=93.23  Aligned_cols=76  Identities=11%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHH
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSI  157 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~  157 (449)
                      +++|.++.+.+.+.+...+...++.++.|++.||+|||+++..+..+..++.+ ....++.+.....-.+.+.|.+.
T Consensus       232 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        232 EQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999888888888888899999999999999999988877766554 34444444334444444444443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.88  E-value=1e-07  Score=95.23  Aligned_cols=123  Identities=8%  Similarity=0.013  Sum_probs=88.2

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH--HHHhcchhHHHHHHHHHHhHHHHhh
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV--WKSITAHPSVWVANICLSLASSIFS  159 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l--~~~~~s~~~l~~~R~l~Glg~~~~~  159 (449)
                      +++|.++.+.+.+.+...++..++.++.|+++||+|||+.+..+.....+..+  ....++.+.+.+..++.|...+...
T Consensus       267 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (405)
T TIGR00891       267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIW  346 (405)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccch
Confidence            47899999999988888888999999999999999999998887665533322  2234566677777677776655444


Q ss_pred             hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          160 FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       160 ~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      +...+ ++.|.    .+.+..++.++.......++..++|.+++++.+..
T Consensus       347 ~~~~~-~~~~~----~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~  391 (405)
T TIGR00891       347 GILPK-HLGEY----FPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL  391 (405)
T ss_pred             hhHHH-HHhhh----CCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44333 33333    34555677777766666677788999999988765

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.86  E-value=8.9e-07  Score=90.42  Aligned_cols=152  Identities=15%  Similarity=0.153  Sum_probs=115.3

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCch--HHHHHHHHHHHHHHHHH-H--------hcchhHHHHHHHH
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQK--KVCLIFFILHLFVGVWK-S--------ITAHPSVWVANIC  150 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr--~~ll~~~~~~~~~~l~~-~--------~~s~~~l~~~R~l  150 (449)
                      +++|+|..|+..+.....+.+.+++..+|++.||+|-|  ++++.+++++.+.++.+ +        .++-+.+++.-++
T Consensus       310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~  389 (477)
T PF11700_consen  310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVL  389 (477)
T ss_pred             HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHH
Confidence            47999999988888888888999999999999999999  89999888886665532 2        4678889999999


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII  230 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~  230 (449)
                      .|+..|...+...+ +.+|..+++    +.+..|++..+.+=.+..+||.+-+.+.+..  .+-|..+....++.+++++
T Consensus       390 ~G~~~G~~qs~sRs-~~~~LiP~g----~e~efFgly~i~gk~ss~lGPll~g~i~~~t--g~~r~g~~~l~~lf~~gl~  462 (477)
T PF11700_consen  390 IGLFMGGIQSASRS-LFSRLIPPG----REAEFFGLYAITGKASSWLGPLLFGLITDAT--GSQRYGFLFLLVLFLIGLI  462 (477)
T ss_pred             HHHHhhhHHHHHHH-HHHHhCCCc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHH
Confidence            99999988777665 445554443    4467888888777777889999988887765  1356777766666666655


Q ss_pred             HHHhccccCCC
Q 013096          231 CVSRGWTENPK  241 (449)
Q Consensus       231 ~i~~~~~e~~~  241 (449)
                      +.. ..+++++
T Consensus       463 ll~-~v~~~~g  472 (477)
T PF11700_consen  463 LLF-FVDVEKG  472 (477)
T ss_pred             HHh-hccchhh
Confidence            443 4454443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.85  E-value=1.4e-07  Score=93.71  Aligned_cols=133  Identities=17%  Similarity=0.099  Sum_probs=91.9

Q ss_pred             hhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 013096          283 APTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLF  360 (449)
Q Consensus       283 ~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  360 (449)
                      .|.+.++ + ++.+.|++.+.+.++..++..+.+++.|   |+++|+.+..+..+.+++.......+ +.+......++.
T Consensus        28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d---~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~  103 (385)
T TIGR00710        28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSD---RYGRRPVLLLGLFIFALSSLGLALSN-NIETLLVLRFVQ  103 (385)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH---hcCChHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHH
Confidence            4544443 2 4566888888888999999999999999   78888877766655555444433332 333344455566


Q ss_pred             HHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhH-HhhhcchhHHHH
Q 013096          361 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRG-FYRNIENAAMVA  419 (449)
Q Consensus       361 ~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  419 (449)
                      +++.+...+...++..|.+|+++|+++++..+...+++...++..++ +.+..+....+.
T Consensus       104 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710       104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            77778888888999999999999999999988877776545544443 344455544333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.85  E-value=2.2e-07  Score=94.15  Aligned_cols=122  Identities=11%  Similarity=0.037  Sum_probs=84.6

Q ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh-cchhHHHHHHHHHHhHHHHhhhhhHH
Q 013096           87 AKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI-TAHPSVWVANICLSLASSIFSFNFET  164 (449)
Q Consensus        87 s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~-~s~~~l~~~R~l~Glg~~~~~~~~~a  164 (449)
                      ++.+.+.+.....++..++.++.|+++||+|||+++..+..+..++.+ ..+. ++.+.+.+..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666777788889999999999999999999988877766554 3333 46677778888889888876666544


Q ss_pred             HHHHHHHhh---cCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          165 WVAIEHEKQ---GQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       165 ~~v~~~~~r---~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                       +++|..+.   ..+++..+..++..+....++..+++.+.+++.+..
T Consensus       335 -~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       335 -LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             -HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             33333211   112334566777777666677777888888877644

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.85  E-value=4.2e-05  Score=76.63  Aligned_cols=338  Identities=15%  Similarity=0.087  Sum_probs=161.4

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHhCC-ChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHH--
Q 013096           54 PFQRNFLLLFSLASVMEGLWSVFGEYELVYYGV-AKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHL--  130 (449)
Q Consensus        54 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~g~-s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~--  130 (449)
                      +..+.++.-.+++..+|.++.-..+....+..- +---.......-.+...++++..|.+.||..|+|+.-.+.+..-  
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            345566677788888887765444333333321 21112222233335677889999999999999999888766532  


Q ss_pred             --HHHH--HH-Hh-c-----chhHHHHHH---HHHHhHHHHhhhhhHH------HHHHHHHhhcCChhhHHHHHHHHHHH
Q 013096          131 --FVGV--WK-SI-T-----AHPSVWVAN---ICLSLASSIFSFNFET------WVAIEHEKQGQRQDILSDTFWLMTFF  190 (449)
Q Consensus       131 --~~~l--~~-~~-~-----s~~~l~~~R---~l~Glg~~~~~~~~~a------~~v~~~~~r~~~~~~l~~~~~~~~~~  190 (449)
                        +++.  .. +. +     +-+.....-   .+.|.-.-. ....+.      |++.-.   +.+++.+.+.++.+--.
T Consensus        82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L-as~~~~iavERDWVvvi~---~~~~~~La~~NA~mRRI  157 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL-ASIANTIAVERDWVVVIA---GGDPGALARMNATMRRI  157 (432)
T ss_pred             HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH-HHhhhhheeccchhhhhc---CCChhhHHHHHHHHHHH
Confidence              2222  11 11 1     112222111   122211111 111111      222111   12445677777777666


Q ss_pred             hHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHH----H---HHhccccCCCC---C----cch-h--------
Q 013096          191 ESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGII----C---VSRGWTENPKM---A----FDD-Y--------  247 (449)
Q Consensus       191 ~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~----~---i~~~~~e~~~~---~----~~~-~--------  247 (449)
                      -...-+++|++.+.+.+..   +.+....+..+..+++..    +   ++...|+-..+   +    .++ .        
T Consensus       158 DL~ckllaPl~vG~l~t~~---s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~  234 (432)
T PF06963_consen  158 DLFCKLLAPLFVGLLMTFA---SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSD  234 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccch
Confidence            6667788999999887643   443333332222222222    1   22223321111   0    000 0        


Q ss_pred             -------------hhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC-CccchHHHHHHHHHHHHHhhhHH
Q 013096          248 -------------RTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADG-REVHLGLIFPSLLGARMLGSTVF  313 (449)
Q Consensus       248 -------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~g~i~~~~~~~~~lg~~l~  313 (449)
                                   ..++|+.-++++.++ -.+..++.+.....|-...+.....+| ++...|..-+...+..+.|..+.
T Consensus       235 ~~~~~~~~~~~~~~~~~w~~Y~~q~vfl-as~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~  313 (432)
T PF06963_consen  235 PSILKRLWNPLRTIIRGWRTYFRQPVFL-ASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVY  313 (432)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHhCHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                         011233334444332 233223332222222122222222233 34456666666667788999999


Q ss_pred             HHHhcCCCCCCchhHHHHHHH----HHHHHHHHHhcccch-hHHHHHHHHHH-HHH-hhh--hhhHHHHHHhccCCCcch
Q 013096          314 PWLISGPSSFRTEDCLLYAFV----VLGFVFSIIAYDYQE-IGILVALFCLF-HAC-VGL--ILPSLARLRTMYVPNELR  384 (449)
Q Consensus       314 ~~l~~~~~~~~~~~~l~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~l~-~~~-~g~--~~p~~~~~~~~~~p~~~r  384 (449)
                      +++.+   |.|..|.-..+..    ...++.........+ .......++.. ... .|+  .--+.+-+.+|.+|+++|
T Consensus       314 p~l~~---riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~R  390 (432)
T PF06963_consen  314 PWLMK---RIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESER  390 (432)
T ss_pred             HHHHH---HhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHh
Confidence            99998   7887664333221    111111111111111 11111111111 111 122  224556677899999999


Q ss_pred             hHHHHhhHHHHHHHHHHH
Q 013096          385 GGMISLSLAPANAAILLF  402 (449)
Q Consensus       385 g~~~~~~~~~~~~~~~~~  402 (449)
                      |++.|.-....+++-+..
T Consensus       391 g~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  391 GAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999999888777764333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.83  E-value=2.2e-07  Score=95.70  Aligned_cols=177  Identities=12%  Similarity=0.078  Sum_probs=105.7

Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCchhHHHHH
Q 013096          257 GDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSS-FRTEDCLLYA  332 (449)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~-~~~~~~l~~~  332 (449)
                      ++|+-....+...+.+-..|+....+.+.++++  + +..+.+.+...+.....+...+.|++.|   | +|+||.+..+
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laD---r~~G~r~~~~~g   87 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGD---HLLGTKRTIVLG   87 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhh---hccchHHHHHHH
Confidence            344444333322333333333333344555443  2 3334555555666555666678999999   6 8999988877


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcc--hhHHHHhhHHHHHHHHHHHHHHhHHh-
Q 013096          333 FVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNEL--RGGMISLSLAPANAAILLFLLLRGFY-  409 (449)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~--rg~~~~~~~~~~~~~~~~~~~~g~~~-  409 (449)
                      ..+.+++.....+..+.....+....+.+++.|+..|+..++..|.+|+++  |++++++.....|++...++..+++. 
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            666655544443332212223345556678888888999999999998774  57788888888888876666555444 


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHH
Q 013096          410 RNIENAAMVAFAALGLFIAAGCMHVLK  436 (449)
Q Consensus       410 ~~~~~~~~~~~~~~~~l~~~~~~~~~~  436 (449)
                      ++.+....+....++++...+.+...+
T Consensus       168 ~~~gw~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        168 DKFGYSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             HhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence            556666655555455554444444434

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.82  E-value=1.6e-07  Score=94.07  Aligned_cols=112  Identities=15%  Similarity=0.053  Sum_probs=82.8

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhH
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                      ++...+++.+.+.+...+..++.|++.|   |+++||.+..+..+.++......... +.   +...++.+++.++..|.
T Consensus        36 s~~~~~~~~~~~~l~~~l~~~~~G~laD---r~grr~vl~~~~~~~~~~~~~~~~~~-~~---~~~r~l~G~~~a~~~pa  108 (393)
T PRK11195         36 PDWSQPLLQMFFVLAYIVLAPFVGAFAD---SFPKGRVMFIANGIKLLGCLLMLFGI-HP---LLAYGLVGIGAAAYSPA  108 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHhhh---ccCCchhhHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHH
Confidence            4455788888888999999999999999   89999987776554443332222221 11   23334567888889999


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHh
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFY  409 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~  409 (449)
                      ..++..|.+|+|+|++++|+.+...+.+...++..|++.
T Consensus       109 ~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195        109 KYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887777655566655544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.81  E-value=3.8e-07  Score=94.28  Aligned_cols=172  Identities=13%  Similarity=0.159  Sum_probs=100.3

Q ss_pred             hhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCchhHHH
Q 013096          255 IFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSS-FRTEDCLL  330 (449)
Q Consensus       255 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~-~~~~~~l~  330 (449)
                      .+++|+-+.........+...++.+..|.|.++++.   +..+.+.+...+.........+.+++.|   | +++|+.+.
T Consensus        16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaD---r~~G~r~~~~   92 (500)
T PRK09584         16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGD---KVLGTKRVIM   92 (500)
T ss_pred             hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchHHHHH
Confidence            456765333333333333333444455777776542   2233444444444333344468899999   7 58888777


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcc--hhHHHHhhHHHHHHHHHHHHHHhHH
Q 013096          331 YAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNEL--RGGMISLSLAPANAAILLFLLLRGF  408 (449)
Q Consensus       331 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~--rg~~~~~~~~~~~~~~~~~~~~g~~  408 (449)
                      .+..+.+++........+..........+.+++.|+..|+..++..+.+|++.  |.+++++.+...+++...++..+++
T Consensus        93 ~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~  172 (500)
T PRK09584         93 LGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW  172 (500)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            76665555544443332222233344456677888888888888999998653  4457777777888876666655544


Q ss_pred             -hhhcchhHHHHHHHHHHHHHH
Q 013096          409 -YRNIENAAMVAFAALGLFIAA  429 (449)
Q Consensus       409 -~~~~~~~~~~~~~~~~~l~~~  429 (449)
                       .++.++...+...++..++..
T Consensus       173 l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        173 LAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHhhCHHHHHHHHHHHHHHHH
Confidence             455666665555544444433

>PRK11043 putative transporter; Provisional

Probab=98.80  E-value=6.7e-07  Score=89.64  Aligned_cols=125  Identities=10%  Similarity=-0.007  Sum_probs=77.3

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH----HHH--hcchhHHHHHHHH
Q 013096           77 GEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV----WKS--ITAHPSVWVANIC  150 (449)
Q Consensus        77 ~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l----~~~--~~s~~~l~~~R~l  150 (449)
                      .|.+.+++|.++.+.+..+....++..+++...+.+.||+|||+.........+++.+    ...  .++.+.+++.-.+
T Consensus       226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (401)
T PRK11043        226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV  305 (401)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            4455567899999999877766677778888899999999999987655544443321    111  2455555666677


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG  207 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~  207 (449)
                      .|++.+...+...+.. .|.    .+ ++.+++.+..+..+......++.+.+.+.+
T Consensus       306 ~~~~~~~~~~~~~~~~-~~~----~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        306 MAAANGAIYPIVVAQA-LRP----FP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHH-hhh----Cc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            7888877666543321 111    12 234556666554444444455555565543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.77  E-value=1.5e-06  Score=88.15  Aligned_cols=56  Identities=20%  Similarity=0.283  Sum_probs=43.8

Q ss_pred             hHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHH
Q 013096           74 SVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILH  129 (449)
Q Consensus        74 ~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~  129 (449)
                      ..+.|... +++|.+..+.+...+.......+++++.|+++||+|||++++++.++.
T Consensus       263 ~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~  319 (432)
T PRK10406        263 TTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA  319 (432)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            34555555 457999988888777777777888999999999999999887765543

>PRK15075 citrate-proton symporter; Provisional

Probab=98.77  E-value=1.2e-06  Score=88.94  Aligned_cols=132  Identities=13%  Similarity=0.132  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH--H-H--HhcchhHHHH
Q 013096           73 WSVFGEYELVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV--W-K--SITAHPSVWV  146 (449)
Q Consensus        73 ~~~~~~~l~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l--~-~--~~~s~~~l~~  146 (449)
                      ...+.|+.+++ +|.++.+.+.......++..++.++.|+++||+||||+++.+.....+...  . .  ..++...+.+
T Consensus       257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            34556666654 799998888777777777888899999999999999998776443322111  1 1  1234444444


Q ss_pred             HHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHH-HHHhHHHHHHHHHHHHHHhccc
Q 013096          147 ANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLM-TFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       147 ~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~-~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      ..++.|++.+...+.... ++.|..+++    ..+..++.. +.+..++..++|.+.+++.+..
T Consensus       337 ~~~~~~~~~g~~~~~~~~-~~~e~~p~~----~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVV-ALTEVMPAE----VRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHHHHHHHHHHHHhhHHH-HHHHHCCCC----ccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence            455556665544333222 344543322    223333332 2222232345777788887765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.77  E-value=2.2e-06  Score=87.55  Aligned_cols=149  Identities=13%  Similarity=0.014  Sum_probs=85.4

Q ss_pred             hHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh--CchHHHHH-HHHHHHHHHH-HHH--hcchhHHHH
Q 013096           74 SVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI--GQKKVCLI-FFILHLFVGV-WKS--ITAHPSVWV  146 (449)
Q Consensus        74 ~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~--GRr~~ll~-~~~~~~~~~l-~~~--~~s~~~l~~  146 (449)
                      ..+.|...+ ++|.+..+.+.......++..++.++.|+++||+  |||+...+ ...+..++.+ ...  .++.+.+.+
T Consensus       273 ~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  352 (452)
T PRK11273        273 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA  352 (452)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence            445566565 4789988888877777778888899999999999  55654322 2222222222 112  234444445


Q ss_pred             HHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHH-HHHHHHHHHHHhcccccCCcchhHHHHHHHH
Q 013096          147 ANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAA-LIGGQVLANWLVGIDVKKGVVPSSTASVFLS  225 (449)
Q Consensus       147 ~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~-~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~  225 (449)
                      ..++.|.+....... ..++..|    ..|.+..++..+..+.....+ .+++|.+.+++.+..   ||+..|.+.....
T Consensus       353 ~~~~~g~~~~~~~~~-~~~~~~~----~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~---g~~~~f~~~~~~~  424 (452)
T PRK11273        353 CMIVIGFLIYGPVML-IGLHALE----LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGS  424 (452)
T ss_pred             HHHHHHHHHHhHHHH-HHHHHHH----HcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh---cchHHHHHHHHHH
Confidence            444445432211111 1112222    245555667777665443343 445788888888765   7888888765554


Q ss_pred             HHHHH
Q 013096          226 ILGII  230 (449)
Q Consensus       226 ~~~~~  230 (449)
                      +++.+
T Consensus       425 ~~~~~  429 (452)
T PRK11273        425 ILAVI  429 (452)
T ss_pred             HHHHH
Confidence            44433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.76  E-value=5.9e-07  Score=90.22  Aligned_cols=127  Identities=15%  Similarity=0.065  Sum_probs=89.8

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhH
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                      +....|+......+...+.+++.+++.|   |+++|+.+..+..+.++........+ +.+...+...+.+++.+...|.
T Consensus        44 s~~~~gl~~~~~~l~~~~~~~~~G~l~d---r~g~k~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~  119 (400)
T PRK11646         44 AAVMVGIALGLRQFIQQGLGIFGGAIAD---RFGAKPMIVTGMLMRAAGFATMAIAH-EPWLLWLSCILSGLGGTLFDPP  119 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHHHH---HhCchHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788887777777777889999999   78888887776666655554444433 3344444445566777777888


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhcchhHHHHHH
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIENAAMVAFA  421 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  421 (449)
                      ..++..+.+|+|+|++++|+.+...+++...++..+++..+.+....+.+.
T Consensus       120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~  170 (400)
T PRK11646        120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATG  170 (400)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            888899999999999999999988888766666555444355554444443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.76  E-value=1.4e-06  Score=90.05  Aligned_cols=145  Identities=14%  Similarity=0.025  Sum_probs=108.7

Q ss_pred             HHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhH
Q 013096           77 GEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLA  154 (449)
Q Consensus        77 ~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg  154 (449)
                      +|.+. +++|.++.+.|++.++..++..+++...+.+.+|+++++++..+.+.++++.+ .+++++.+...+.-++.|++
T Consensus       241 lPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~  320 (524)
T PF05977_consen  241 LPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAA  320 (524)
T ss_pred             hhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            34444 47899999999999999999999999999999999999999888888887765 77889999999888999988


Q ss_pred             HHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          155 SSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       155 ~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      ........++ .    .++..|++.++++++........+..+|..+.|.+.+..   |.+..+.++++..+++.
T Consensus       321 ~~~~~~~~~t-~----~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~---g~~~al~~a~~~lll~~  387 (524)
T PF05977_consen  321 WIIANSSLNT-L----VQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF---GVRTALLIAGAALLLSA  387 (524)
T ss_pred             HHHHHHHHHH-H----HHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHH
Confidence            7655444332 1    234467777899998876655555556777888887765   66666666554444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.75  E-value=5.2e-07  Score=88.15  Aligned_cols=127  Identities=19%  Similarity=0.252  Sum_probs=93.2

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhH
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                      ++.+.+++.+...++..+++.+.+++.|   |+++|+.+..+..+.+++..+..+.. +.+..+...++.+++.+...|.
T Consensus        30 s~~~~~~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~  105 (352)
T PF07690_consen   30 SPSQIGLLFSAFFLGSALFSPFAGYLSD---RFGRRRVLIIGLLLFALGSLLLAFAS-NFWLLLIARFLLGIGSGFFSPA  105 (352)
T ss_dssp             TSHCHHHHHHHHHHHHHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCeeeEeehhhhhhhHHHHhhhhh-hHHHHhhhcccccccccccccc
Confidence            5667899888888999999999999999   88888877777666655533333322 3344555666778888889999


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHh-hhcchhHHHHHH
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFY-RNIENAAMVAFA  421 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~  421 (449)
                      ..++..|.+|+|+|+++++..+...+++...++..+++. +..+.+..+.+.
T Consensus       106 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~  157 (352)
T PF07690_consen  106 SNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS  157 (352)
T ss_dssp             HHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred             ccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence            999999999999999999999988888766666555443 455554444333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10504 putative transporter; Provisional

Probab=98.74  E-value=6.2e-07  Score=91.97  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=94.9

Q ss_pred             HHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 013096          279 WILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVAL  356 (449)
Q Consensus       279 ~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  356 (449)
                      +..+.|.+.++ + ++.+.+++.+.+.++..++..+.+++.|   |+++||....+..+.+++.....+.+ +.+..+..
T Consensus        29 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d---~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  104 (471)
T PRK10504         29 VNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLAD---RVGVRNIFFTAIVLFTLGSLFCALSG-TLNELLLA  104 (471)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHH
Confidence            34567887764 2 4455677777778888899999999999   78888877765555544443333332 33344455


Q ss_pred             HHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHh-HHhhhcchhHHHHH
Q 013096          357 FCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLR-GFYRNIENAAMVAF  420 (449)
Q Consensus       357 ~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~  420 (449)
                      .++.+++.+...|...+...|.+|+++|+++++..+...+++...++..+ .+.+..+....+.+
T Consensus       105 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~  169 (471)
T PRK10504        105 RVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI  169 (471)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence            56677888888888888889999999999999998887777655555444 44455555444433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.73  E-value=4e-07  Score=89.67  Aligned_cols=109  Identities=15%  Similarity=0.182  Sum_probs=76.4

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHH-HHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHH-h----------cch
Q 013096           75 VFGEYELVYYGVAKEQMMLLLCA-GFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKS-I----------TAH  141 (449)
Q Consensus        75 ~~~~~l~~~~g~s~~~ig~l~~~-~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~-~----------~s~  141 (449)
                      ...+...+++|.++++++.+... +.+...++.+++|+++||+||||.+..+.++..++.. ... .          ++.
T Consensus       230 ~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (356)
T TIGR00901       230 VLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHL  309 (356)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence            33444456789999999877764 4456778888999999999999998888777666543 222 2          345


Q ss_pred             hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 013096          142 PSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT  188 (449)
Q Consensus       142 ~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~  188 (449)
                      +.+....++.+++.+...+...+ +..|.    .|++..++.++..+
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~----~p~~~~g~~~g~~~  351 (356)
T TIGR00901       310 LMLFLTITLEAVTGGLGTVAFVA-FLSKL----SNPKFGATQMALLS  351 (356)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHH-HHHHh----cCCCccHHHHHHHH
Confidence            77888889999998887776554 33443    34555666666544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.70  E-value=1.5e-06  Score=89.41  Aligned_cols=145  Identities=12%  Similarity=-0.060  Sum_probs=78.7

Q ss_pred             HHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchH-----H-H-HHHHHHHHHHHH-HHHhcchhHHHHH
Q 013096           77 GEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKK-----V-C-LIFFILHLFVGV-WKSITAHPSVWVA  147 (449)
Q Consensus        77 ~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~-----~-l-l~~~~~~~~~~l-~~~~~s~~~l~~~  147 (449)
                      .|... +++|.++.+.+.+.+...++..++.++.|+++||+|||+     . + ....++.++..+ ....++.+...+.
T Consensus       275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~  354 (476)
T PLN00028        275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV  354 (476)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            34433 467999999998888888888999999999999999762     2 2 122222222222 2334455555555


Q ss_pred             HHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q 013096          148 NICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSIL  227 (449)
Q Consensus       148 R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~  227 (449)
                      -++.+++.+...+...+ +..+     ..++..+...+....++.++++++|.+    .......+|+..|.+..++.++
T Consensus       355 ~~l~~~~~~~~~~~~~~-~~~~-----~~~~~~g~~~g~~~~~g~lg~~i~~~l----~~~~~~~~y~~~f~~~~~~~~i  424 (476)
T PLN00028        355 MILFSIFVQAACGATFG-IVPF-----VSRRSLGVISGLTGAGGNVGAVLTQLL----FFTGSSYSTETGISLMGVMIIA  424 (476)
T ss_pred             HHHHHHHHHHhhhhhcc-cCcc-----cChhhchhhhhhhhccccHHHHHHHHH----HHhcCCccHhhHHHHHHHHHHH
Confidence            55666654433322211 1112     122334555555544444444444443    3211013577788776555444


Q ss_pred             HHHH
Q 013096          228 GIIC  231 (449)
Q Consensus       228 ~~~~  231 (449)
                      +.+.
T Consensus       425 ~~~~  428 (476)
T PLN00028        425 CTLP  428 (476)
T ss_pred             HHHH
Confidence            4433

>TIGR01272 gluP glucose/galactose transporter

Probab=98.69  E-value=5.3e-06  Score=80.27  Aligned_cols=129  Identities=12%  Similarity=0.017  Sum_probs=84.3

Q ss_pred             hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhh
Q 013096           84 YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNF  162 (449)
Q Consensus        84 ~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~  162 (449)
                      +|.++++.+..++.+..+..++....++++||+|+||++.++..+..+..+ ....++... ...-++.|++.+..+|..
T Consensus       173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~  251 (310)
T TIGR01272       173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI  251 (310)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence            689999999999999899999999999999999999998877666655444 323333322 234457889998888886


Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHH
Q 013096          163 ETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVF  223 (449)
Q Consensus       163 ~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~  223 (449)
                      .+....+.     +++ .+...+.. ..+.++..+.|.+-+.+.+..   |.+..|++...
T Consensus       252 ~s~a~~~~-----~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~---g~~~a~~v~~~  302 (310)
T TIGR01272       252 FSLALNAL-----GRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL---GIQLAFALPVP  302 (310)
T ss_pred             HHHHHhhh-----hhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc---cchHHHHHHHH
Confidence            44332221     111 11122222 233355566787777777754   66677765433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.68  E-value=7e-07  Score=91.75  Aligned_cols=133  Identities=17%  Similarity=0.160  Sum_probs=95.0

Q ss_pred             hhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 013096          282 WAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL  359 (449)
Q Consensus       282 ~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  359 (449)
                      ..|.+.++ + +..+.+++.+.+.++..++.++.+++.|   |+++|+.+..+..+.+++.......+ +....+..-++
T Consensus        24 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~   99 (485)
T TIGR00711        24 AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK---RFGTRRLFLISTFAFTLGSLLCGVAP-NLELMIIFRVI   99 (485)
T ss_pred             HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHH---HhCcHHHHHHHHHHHHHHHHHHhCcC-CHHHHHHHHHH
Confidence            46766554 2 4456788888889999999999999999   88988887776665555544444433 33444555566


Q ss_pred             HHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhH-HhhhcchhHHH
Q 013096          360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRG-FYRNIENAAMV  418 (449)
Q Consensus       360 ~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~  418 (449)
                      .+++.+...|...++..|.+|+++|++++++......++...++..++ +.++.+....+
T Consensus       100 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f  159 (485)
T TIGR00711       100 QGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF  159 (485)
T ss_pred             HHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence            677888888999999999999999999999988877776555554443 34445544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.65  E-value=8.5e-06  Score=77.97  Aligned_cols=210  Identities=13%  Similarity=0.021  Sum_probs=122.7

Q ss_pred             CCccchhHHHHHHHHHHHHHHhhcccccCC-CCCCCCCCCCCCCcchhhhHHHHHHHH-HHHHHhhhhhHHHHHHHHHhC
Q 013096            8 PFGNRVHFLYIFIFLSCFFSIFLLPSKSSS-SSSSSLFDHSNSSSFVPFQRNFLLLFS-LASVMEGLWSVFGEYELVYYG   85 (449)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~l~~~~g   85 (449)
                      +.|+.+..+.-.+...++..|.  |...++ ..+.+.+.+...+-+++-+--.+.+|+ +-++......--+|.++.|.|
T Consensus       162 ~gW~~aL~~WAl~allAl~~Wl--Pq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G  239 (395)
T COG2807         162 GGWRGALGFWALLALLALLIWL--PQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG  239 (395)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh--hhcccccccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence            3688887777666665555544  432211 112222222211112221111222222 333333333345689999999


Q ss_pred             CChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHHHHHHHHHHHHH-HHHhc-chhHHHHHHHHHHhHHHHhhhhh
Q 013096           86 VAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCLIFFILHLFVGV-WKSIT-AHPSVWVANICLSLASSIFSFNF  162 (449)
Q Consensus        86 ~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll~~~~~~~~~~l-~~~~~-s~~~l~~~R~l~Glg~~~~~~~~  162 (449)
                      +|+++.|.+.+...+.+...++..-.+++|. +||+..+.....+.++.. +.+.| +.+.+.  -++.|+|.|..++..
T Consensus       240 ~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw--~~llG~G~G~~F~la  317 (395)
T COG2807         240 LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW--ALLLGLGQGGAFPLA  317 (395)
T ss_pred             CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH--HHHHhCccchHHHHH
Confidence            9999999999988888888888888999965 577777666666555433 33443 333333  389999999888776


Q ss_pred             HHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHH
Q 013096          163 ETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSIL  227 (449)
Q Consensus       163 ~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~  227 (449)
                      -. ++.+   |..+.++.++..++.+..+.+-+..||.+-|++.+..  .+|+.+...-+...++
T Consensus       318 L~-li~~---rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~--gsw~~~~~~l~~~~i~  376 (395)
T COG2807         318 LT-LILL---RSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT--GSWSAPLVLLALATLL  376 (395)
T ss_pred             HH-HHHh---hcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc--CChHHHHHHHHHHHHH
Confidence            44 3332   2223333444455555455555567899999988865  3777776654444333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.64  E-value=2e-06  Score=88.89  Aligned_cols=137  Identities=15%  Similarity=0.054  Sum_probs=94.3

Q ss_pred             HHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 013096          280 ILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALF  357 (449)
Q Consensus       280 ~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~  357 (449)
                      ..-.|.+..+ + +..+.+++...+.++...+.+..+++.|   |+++|+.+..+..+.+++.......+ +.+.++..-
T Consensus        26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D---~~Grk~~l~~~~~~~~~~~~~~~~a~-~~~~li~~r  101 (495)
T PRK14995         26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD---RIGFKRLLMLGGTLFGLASLAAAFSP-TASWLIATR  101 (495)
T ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence            3346777654 2 3456788888888888888899999999   89999888777666555544444443 344445454


Q ss_pred             HHHHHHhhhhhhHHHHHHhccC-CCcchhHHHHhhHHHHHHHHHHHHHHhHH-hhhcchhHHHHH
Q 013096          358 CLFHACVGLILPSLARLRTMYV-PNELRGGMISLSLAPANAAILLFLLLRGF-YRNIENAAMVAF  420 (449)
Q Consensus       358 ~l~~~~~g~~~p~~~~~~~~~~-p~~~rg~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~  420 (449)
                      .+.+++.+...|.......+.+ |+++|++++|+.....+++...++..+++ .+..+....+.+
T Consensus       102 ~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i  166 (495)
T PRK14995        102 ALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI  166 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence            5667777777777666565554 77899999999988888876666666544 455565554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.64  E-value=3.4e-06  Score=85.36  Aligned_cols=39  Identities=31%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             HHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH
Q 013096           95 LCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG  133 (449)
Q Consensus        95 ~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~  133 (449)
                      ...+.+...+..|++|+++||+||||++.++.+...+..
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence            344556778889999999999999999998876655543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.63  E-value=3.4e-06  Score=83.13  Aligned_cols=135  Identities=14%  Similarity=0.038  Sum_probs=81.2

Q ss_pred             HHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCc-hHHHHHH-HHHHHHHH-HH-HH--hcchhHHHHHH
Q 013096           76 FGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQ-KKVCLIF-FILHLFVG-VW-KS--ITAHPSVWVAN  148 (449)
Q Consensus        76 ~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GR-r~~ll~~-~~~~~~~~-l~-~~--~~s~~~l~~~R  148 (449)
                      +.+... +++|.++.+.+...+...++..++.++.|+++||.++ |+..+.. .......+ .. ..  ..+.+...+..
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL  317 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence            344433 4679999999988888888888999999999998743 3332221 11111111 11 11  23455555666


Q ss_pred             HHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhH
Q 013096          149 ICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSS  218 (449)
Q Consensus       149 ~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f  218 (449)
                      ++.|.......+.... +..|.    .+++..++..+..+....++..++|.+.+.+.+..   ||+..|
T Consensus       318 ~~~g~~~~~~~~~~~~-~~~~~----~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~f  379 (379)
T TIGR00881       318 FALGFLVYGPQMLIGV-IASEL----APKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF---GWAGAF  379 (379)
T ss_pred             HHHHHHHhhhhHHHHH-HHHHh----cCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh---cccccC
Confidence            6666544332222111 23332    34455677777777667777778888888888765   776543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.63  E-value=1.2e-06  Score=85.29  Aligned_cols=151  Identities=18%  Similarity=0.195  Sum_probs=108.5

Q ss_pred             hhhhhccCC--CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 013096          282 WAPTLVADG--REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL  359 (449)
Q Consensus       282 ~~p~~~~~~--~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  359 (449)
                      -.|.+.++.  +..+.|.+-+++.+..-++-.+.|.++|   |.++|+.+..++++.+++.++..+.. +.+...+...+
T Consensus        51 a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD---r~npr~fm~~gLilsai~nil~Gfs~-s~~~~~~l~~l  126 (448)
T COG2271          51 AMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD---RSNPRYFMAFGLILSAIVNILFGFSP-SLFLFAVLWVL  126 (448)
T ss_pred             ccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc---cCCCceeehHHHHHHHHHHHHHhhhh-HHHHHHHHHHH
Confidence            467776664  4567899999999999999999999999   78889988888888888777766654 44444455556


Q ss_pred             HHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH-HHHHHH--hHHhhhcchhHHHHHHH-HHHHHHHHHHHHH
Q 013096          360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI-LLFLLL--RGFYRNIENAAMVAFAA-LGLFIAAGCMHVL  435 (449)
Q Consensus       360 ~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~-~~~~~~--g~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~  435 (449)
                      -+..+|+.+|.+...+..-+|+++||+..|+-+..-|++. +.+++.  +.+..+.+....+.+.. +++++++.++...
T Consensus       127 ng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         127 NGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             HHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            6888999999999999999999999999998888777753 333333  44444445555444443 4444444333333


Q ss_pred             H
Q 013096          436 K  436 (449)
Q Consensus       436 ~  436 (449)
                      |
T Consensus       207 r  207 (448)
T COG2271         207 R  207 (448)
T ss_pred             C
Confidence            3

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.62  E-value=2.7e-06  Score=86.50  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             hhhhhccCC-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc---chhHHHHHHH
Q 013096          282 WAPTLVADG-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY---QEIGILVALF  357 (449)
Q Consensus       282 ~~p~~~~~~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~---~~~~~~~~~~  357 (449)
                      +.|.+.+.+ ++.+.|++.+.+.++..++....+++.|   |+++++.+..+..+.+++.......+   ++........
T Consensus        49 ~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d---r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  125 (438)
T TIGR00712        49 AMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSD---RSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLL  125 (438)
T ss_pred             hhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhh---ccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence            567665433 4556788888888999999999999999   78888876666555554443332221   1222333444


Q ss_pred             HHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH
Q 013096          358 CLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI  399 (449)
Q Consensus       358 ~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~  399 (449)
                      ++.+++.|..++.......|.+|+++||+++|+.+...+.+.
T Consensus       126 ~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~  167 (438)
T TIGR00712       126 FLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG  167 (438)
T ss_pred             HHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHh
Confidence            556777787788788888899999999999999887777654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.61  E-value=1.7e-05  Score=79.35  Aligned_cols=130  Identities=14%  Similarity=0.110  Sum_probs=88.9

Q ss_pred             HHHHHHHHHhC-CChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHH-HHHHHh-cchhHH----HHH
Q 013096           75 VFGEYELVYYG-VAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFV-GVWKSI-TAHPSV----WVA  147 (449)
Q Consensus        75 ~~~~~l~~~~g-~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~-~l~~~~-~s~~~l----~~~  147 (449)
                      .+.....++.| .+...++.+.+.+.++=...-...+++-.|+|.|++++++.+.+++= .+.+.. ++.+..    ++.
T Consensus       228 ~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~  307 (400)
T PF03825_consen  228 TFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLG  307 (400)
T ss_pred             HHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            34444456777 67777787777777666665667899999999999999999888773 234444 454443    333


Q ss_pred             HHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHH-HHhHHHHHHHHHHHHHHhccc
Q 013096          148 NICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMT-FFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       148 R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~-~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      -.++|+.-+....+... ++++.    .|++..++.++..+ ..++++..+|..++|++.+.+
T Consensus       308 q~lhG~tf~~~~~a~~~-yi~~~----~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~  365 (400)
T PF03825_consen  308 QLLHGLTFGLFHAASVR-YIDRI----APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF  365 (400)
T ss_pred             HhhhhHHHHHHHHHHHH-HHHHh----CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            55799998877766533 44443    35555566666544 346788888999999998865

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.61  E-value=2.2e-06  Score=83.63  Aligned_cols=150  Identities=13%  Similarity=0.167  Sum_probs=107.7

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhHHHHhhh
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVW-KSITAHPSVWVANICLSLASSIFSF  160 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~-~~~~s~~~l~~~R~l~Glg~~~~~~  160 (449)
                      .++|++..|+........+..++++.++|.|.||+|-|+++..+.+++.+.++. .+...-.-+++.-++.|...|....
T Consensus       281 ~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA  360 (438)
T COG2270         281 ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA  360 (438)
T ss_pred             HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence            389999999998888888888999999999999999999999999999998873 3444444556666788888887766


Q ss_pred             hhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccC
Q 013096          161 NFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTEN  239 (449)
Q Consensus       161 ~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~  239 (449)
                      .+.+++ .+.    .|+++-++.++..++.+-.+...||.+-+...+.. + +-|.-+....++..+.++ ++.+.|+.
T Consensus       361 ~SRSy~-~~l----vp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT-g-~~r~g~~~i~vll~iGl~-~L~~v~~~  431 (438)
T COG2270         361 SSRSYL-ARL----VPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT-G-SSRAGVLSIIVLLLIGLL-LLLRVKVP  431 (438)
T ss_pred             HHHHHH-HHh----CCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh-c-chhhHHHHHHHHHHhhHh-hEEeecCC
Confidence            655533 333    45555667788877776667788888888777655 2 345555554555555544 33445554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.60  E-value=3.8e-06  Score=95.78  Aligned_cols=132  Identities=11%  Similarity=0.028  Sum_probs=92.5

Q ss_pred             HHhCCChH-HHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhh
Q 013096           82 VYYGVAKE-QMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFS  159 (449)
Q Consensus        82 ~~~g~s~~-~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~  159 (449)
                      +++|.++. +.+++.+...++..+++++.|+++||+++|+++.++.++.+++.+ ....++.+.+++.-++.|++.+...
T Consensus       261 ~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  340 (1146)
T PRK08633        261 EVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFI  340 (1146)
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence            46899988 889888888888899999999999999999998887777766554 4556788888888899999988766


Q ss_pred             hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHH
Q 013096          160 FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTA  220 (449)
Q Consensus       160 ~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~  220 (449)
                      +...+ ++.+.    .+.+..++.++..+....++.++++.+++.+.. . ++++...|.+
T Consensus       341 ~~~~~-~~~~~----~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~-~~~~~~~~~~  394 (1146)
T PRK08633        341 VPLNA-LIQFR----APEKELGKVLAANNFLQNVGMLLFLALTTLFSG-L-GLSPAGLFYL  394 (1146)
T ss_pred             HHHHH-HHhhc----CCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-h-ccCHHHHHHH
Confidence            55443 22222    344455666666665555555556666655533 2 2344445544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.60  E-value=2.6e-06  Score=85.84  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=87.7

Q ss_pred             hhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 013096          282 WAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL  359 (449)
Q Consensus       282 ~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  359 (449)
                      ..|.+.++ + +..+.|++.+.+.++..++.+..+++.|   |+++|+.+..+..+.+++.....+.+ +...+...-++
T Consensus        30 ~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d---r~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l  105 (412)
T TIGR02332        30 AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA---IIGARRWIAGIMVLWGIASTATMFAT-GPESLYLLRIL  105 (412)
T ss_pred             HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence            34544443 2 4566888888888999999999999999   89999887776666555554444433 33334444456


Q ss_pred             HHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHh
Q 013096          360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLR  406 (449)
Q Consensus       360 ~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g  406 (449)
                      .+++.|...|....+..|.+|+++||+++++.+...+.+...++..+
T Consensus       106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~  152 (412)
T TIGR02332       106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILS  152 (412)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888888898888889999999999999998877776654454443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.59  E-value=1.6e-06  Score=84.44  Aligned_cols=205  Identities=10%  Similarity=0.032  Sum_probs=110.9

Q ss_pred             ccchhHHHHHHHH-HHHHHHhhcccccCCCCCCCCCCCCCCCcchh-----hhHHHHHHHHHHHHHhhh-hhHHHHHHHH
Q 013096           10 GNRVHFLYIFIFL-SCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVP-----FQRNFLLLFSLASVMEGL-WSVFGEYELV   82 (449)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~-~~~~~~~l~~   82 (449)
                      |+.+...|.-..+ ..+.+++.....++. +. +++++.. .+++.     ..+.+...| ...++..+ .+..++..++
T Consensus       171 w~~~~~i~~~~l~v~~v~~~~~~~d~p~~-r~-~~~~~~~-~~~~~v~~~~~~W~lsllY-~~tFG~Fvgfs~~l~~~~~  246 (417)
T COG2223         171 WRNVAGIYVVALAIAAVLAWLGMNDVPEH-RA-SVKPQLP-AQLKAVFSNKDTWLLSLLY-FATFGGFVGFSAYLPMYLV  246 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCChhh-hc-cccccch-hHHHHHhcCcchHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            7777777655554 566666655433331 00 1111220 11121     112222233 33333222 2334555554


Q ss_pred             -HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh-------cc----hhHHHHHHH
Q 013096           83 -YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI-------TA----HPSVWVANI  149 (449)
Q Consensus        83 -~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~-------~s----~~~l~~~R~  149 (449)
                       +|+.++.+.|.....+-+.+.+..|.+|+||||+|.+|++++......++.. ....       ++    +..++...+
T Consensus       247 ~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~  326 (417)
T COG2223         247 TQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV  326 (417)
T ss_pred             HhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH
Confidence             8999999988887888888888899999999999999999887666555443 2222       22    234566677


Q ss_pred             HHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          150 CLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       150 l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      ..|+|.|..+-     +++    +.+++ +.+.+.+.....++++...-|..-+...+.. + .++..|++-....+++.
T Consensus       327 ~~G~GnGsvfk-----~Ip----~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t-g-~~~~~f~~~~~~~~~a~  394 (417)
T COG2223         327 FAGLGNGSVFK-----MIP----VIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT-G-SYTGAFMLLLAFYLVAL  394 (417)
T ss_pred             HhccCcchhee-----ech----HHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhc-c-cHHHHHHHHHHHHHHHH
Confidence            78888775431     122    22222 3455555554444443322233333333333 1 46677776555555554


Q ss_pred             H
Q 013096          230 I  230 (449)
Q Consensus       230 ~  230 (449)
                      +
T Consensus       395 v  395 (417)
T COG2223         395 V  395 (417)
T ss_pred             H
Confidence            4

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.57  E-value=2.3e-06  Score=97.55  Aligned_cols=137  Identities=9%  Similarity=-0.050  Sum_probs=92.8

Q ss_pred             HHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh----------------
Q 013096           77 GEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI----------------  138 (449)
Q Consensus        77 ~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~----------------  138 (449)
                      .|...+ .+|.++.+.|.+.+...++..+++++.|.++||.++++.+..+.++.++..+ ..+.                
T Consensus       248 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (1140)
T PRK06814        248 LPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV  327 (1140)
T ss_pred             hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhh
Confidence            344344 5799999999999988899999999999999999888876665555444332 2222                


Q ss_pred             ----cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCc
Q 013096          139 ----TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGV  214 (449)
Q Consensus       139 ----~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~  214 (449)
                          ++.+.+.+.-++.|++.+...+...+ ++.+    ..+.+..+++++..+..+.++..+++.+++.+....  .+.
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~----~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--~~~  400 (1140)
T PRK06814        328 FLSKRHGWRILIDLFGLAAAGGLYIVPLFA-ALQA----WANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--FSI  400 (1140)
T ss_pred             hhcccccHHHHHHHHHHHHHHHHhHHHHHH-HHHh----hCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--cCH
Confidence                67788888889999988876655443 2222    345556677777776666666667777777665321  244


Q ss_pred             chhHHH
Q 013096          215 VPSSTA  220 (449)
Q Consensus       215 ~~~f~~  220 (449)
                      ...|.+
T Consensus       401 ~~~~~~  406 (1140)
T PRK06814        401 PWIILF  406 (1140)
T ss_pred             HHHHHH
Confidence            444443

>PRK09669 putative symporter YagG; Provisional

Probab=98.56  E-value=3.2e-06  Score=86.13  Aligned_cols=117  Identities=11%  Similarity=0.086  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHH--hcchhHHHHHHHHHHhHHHHhhhhhHHHHHH
Q 013096           92 MLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKS--ITAHPSVWVANICLSLASSIFSFNFETWVAI  168 (449)
Q Consensus        92 g~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~--~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~  168 (449)
                      +.+...+.++..++.+++++++||+|||+.+..+.+...+..+ ..+  .++.+.+++..++.|++.+...+...+ +++
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a-m~a  345 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS-MFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            3455566677778888999999999999999888766654332 222  357777888889999999887776655 334


Q ss_pred             HHHh---hcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          169 EHEK---QGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       169 ~~~~---r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      |..+   ....++.-+..++..+...-++..+++.+++++.+..
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3321   1111222344556655555566667777777766543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.55  E-value=6.4e-06  Score=84.74  Aligned_cols=146  Identities=15%  Similarity=0.157  Sum_probs=108.5

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHH--HHHHHHHHHHHHH-HHHhcchhHHHHHHHHHH
Q 013096           76 FGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKV--CLIFFILHLFVGV-WKSITAHPSVWVANICLS  152 (449)
Q Consensus        76 ~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~--ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~G  152 (449)
                      ++++...+.+.++.+...+.+.-.+.-.++.+..|+++|+...|+.  ...+.+..+++.+ +.+.++++.+...-++.|
T Consensus       320 ~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG  399 (509)
T KOG2504|consen  320 YLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFG  399 (509)
T ss_pred             HHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4456667899999999999888888889999999999999994333  3344555555554 788899999999999999


Q ss_pred             hHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHH
Q 013096          153 LASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       153 lg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      +..|...... .....|.    .+.+++..+++.....++++.+++|++++++.+..  .+|...|+......+++
T Consensus       400 ~~~g~~~~l~-~~i~~~~----~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t--g~Y~~~f~~~g~~~~~s  468 (509)
T KOG2504|consen  400 FCVGSFSSLT-PVILVDL----VGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT--GNYDHAFYFCGLCFLLS  468 (509)
T ss_pred             HHHHHHHHHH-HHHHHHH----cChhhcchHHHHHHHHhHHHHHcCcccceeeeecc--CCeeeehhhcChHHHHH
Confidence            9988654332 1122332    45567888999988899999999999999887765  24777787654443333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.54  E-value=9.4e-06  Score=76.52  Aligned_cols=153  Identities=19%  Similarity=0.109  Sum_probs=98.9

Q ss_pred             HHhhhhhHHHHHHHHHhCCCh--HHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcc--hh
Q 013096           68 VMEGLWSVFGEYELVYYGVAK--EQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITA--HP  142 (449)
Q Consensus        68 ~~~~~~~~~~~~l~~~~g~s~--~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s--~~  142 (449)
                      .......+..+....+++.+.  .+.+...+...+...++.++.|.++||+|||+.++.+...+..+.+ +.+.++  .+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            333444555666666776665  4678888888888888889999999999999888887766444443 555555  89


Q ss_pred             HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHH-HhHHHHHHHHHHHHHHhcccccCCcchhHHHH
Q 013096          143 SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTF-FESAALIGGQVLANWLVGIDVKKGVVPSSTAS  221 (449)
Q Consensus       143 ~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~-~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~  221 (449)
                      .+++.|+.+|++.+...+...+ ++.|..++ .  +..+...+.... ....+.+++|.+++.+... ...+|+..|...
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  170 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASA-LLSEWFPE-A--TERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLA  170 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHH-HHHHhcCc-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHH
Confidence            9999999999999877776554 34444322 0  233344443333 2344555666666655443 124777766655


Q ss_pred             HHHH
Q 013096          222 VFLS  225 (449)
Q Consensus       222 ~~~~  225 (449)
                      ....
T Consensus       171 ~~~~  174 (338)
T COG0477         171 ALLG  174 (338)
T ss_pred             HHHH
Confidence            4443

>PRK10133 L-fucose transporter; Provisional

Probab=98.53  E-value=1.9e-05  Score=80.23  Aligned_cols=133  Identities=8%  Similarity=-0.099  Sum_probs=83.8

Q ss_pred             HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhh
Q 013096           83 YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFN  161 (449)
Q Consensus        83 ~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~  161 (449)
                      ++|.|+.+.+..+....++..++.++.|++.||+||||++..+..+..+..+ ..+.++.. -+..-.+.|++.+..+|.
T Consensus       289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~  367 (438)
T PRK10133        289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPT  367 (438)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999998887666655444 33444432 244557889999988888


Q ss_pred             hHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCC-cchhHHHHHHHHH
Q 013096          162 FETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKG-VVPSSTASVFLSI  226 (449)
Q Consensus       162 ~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g-~~~~f~~~~~~~~  226 (449)
                      ..+....+     .++ +.+...+... ....+..++|.+.+.+.+..   | -+..|++..+..+
T Consensus       368 ~~s~a~~~-----~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~---g~~~~~~~v~~~~~~  423 (438)
T PRK10133        368 IFSLGIKN-----LGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---GNIPTAELIPALCFA  423 (438)
T ss_pred             HHHHHHcc-----cch-hhccchhHHh-HHhccchHHHHHHHHHHHhc---cchHHHHHHHHHHHH
Confidence            65422211     111 1111222221 11122334556666666543   4 4566765444433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.53  E-value=9.3e-06  Score=83.17  Aligned_cols=149  Identities=13%  Similarity=-0.024  Sum_probs=84.0

Q ss_pred             HHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHH--------HHHHHHH--HHHHHH-HH-hcch
Q 013096           75 VFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVC--------LIFFILH--LFVGVW-KS-ITAH  141 (449)
Q Consensus        75 ~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~l--------l~~~~~~--~~~~l~-~~-~~s~  141 (449)
                      .++|..++ ++|.+..+.+...+...+...++.++.|+++||++||+..        ..+....  .+..++ .. ..+.
T Consensus       282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (465)
T TIGR00894       282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF  361 (465)
T ss_pred             HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            34555544 6899999999988888889999999999999998765321        1111111  111111 11 2334


Q ss_pred             hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccC-CcchhHHH
Q 013096          142 PSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKK-GVVPSSTA  220 (449)
Q Consensus       142 ~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~-g~~~~f~~  220 (449)
                      ...++.-.+.+.+.+...+..  +..    ..+..++..+.+.+..+..+.+++.++|.+.+++.+.. ++ +|+..|.+
T Consensus       362 ~~~~~~~~l~~~~~~~~~~~~--~~~----~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~-~~~~~~~~f~~  434 (465)
T TIGR00894       362 YLTIIILTLANAVSSGPLAGV--LIN----SLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQD-SKNVWLIVFLI  434 (465)
T ss_pred             HHHHHHHHHHHHHhhhhhhhh--hhc----hhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC-CchHHHHHHHH
Confidence            333333334443333222221  111    11223335677777777777777788888877776532 12 36677777


Q ss_pred             HHHHHHHHHH
Q 013096          221 SVFLSILGII  230 (449)
Q Consensus       221 ~~~~~~~~~~  230 (449)
                      .+...+++.+
T Consensus       435 ~~~~~~i~~i  444 (465)
T TIGR00894       435 MAFVNILCVI  444 (465)
T ss_pred             HHHHHHHHHH
Confidence            6555555433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.51  E-value=2.4e-05  Score=79.13  Aligned_cols=161  Identities=13%  Similarity=-0.045  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH---Hhcchh------H
Q 013096           74 SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK---SITAHP------S  143 (449)
Q Consensus        74 ~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~---~~~s~~------~  143 (449)
                      ..|..++.++-|+++.+...+.........+...++..+.||+|||+.++.+..+..+..+ ..   ..++..      .
T Consensus       290 ~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~  369 (485)
T KOG0569|consen  290 FFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL  369 (485)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3455677788999998877776666677788888999999999999999998777655432 11   111111      1


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHH-HHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHH
Q 013096          144 VWVANICLSLASSIFSFNFETWV-AIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASV  222 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~-v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~  222 (449)
                      .+++.++..++.+.... .-.|+ .+|.-    +++....+++.....+.+...+-+..-..+-+..   |- ..|..-+
T Consensus       370 ~i~~~~~~~~~f~~G~g-pi~~fi~aELf----~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~---g~-~~filF~  440 (485)
T KOG0569|consen  370 CIAAIFLFIISFAIGPG-PIPWFIGAELF----PQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI---GP-YVFILFV  440 (485)
T ss_pred             HHHHHHHHHHhhhcCCC-chhHHHHHHhC----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc-hhhHHHH
Confidence            23344444333332111 12344 45553    3334444555555444433322222222222222   32 3455555


Q ss_pred             HHHHHHHHHHHhccccCCCCC
Q 013096          223 FLSILGIICVSRGWTENPKMA  243 (449)
Q Consensus       223 ~~~~~~~~~i~~~~~e~~~~~  243 (449)
                      +...+..+++++..|||++++
T Consensus       441 i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  441 IPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHHHHHHHHHhCcccCCCC
Confidence            555666677888999999874

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.50  E-value=8.6e-06  Score=82.16  Aligned_cols=125  Identities=6%  Similarity=-0.059  Sum_probs=83.2

Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHH
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSL  371 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~  371 (449)
                      ....+...+.+.++..++.+..+++.|   |+++|+.+..+..+.+++.......+ +...++..-++.+++.+...+..
T Consensus        50 ~~~~~~~~s~~~~~~~~~~~~~G~l~d---r~Grr~~l~~~~~~~~~~~~~~~~a~-~~~~l~~~r~l~Gi~~~~~~~~~  125 (413)
T PRK15403         50 VSLAPASVSLYLAGGMALQWLLGPLSD---RIGRRPVLITGALIFTLACAATLFTT-SMTQFLIARFIQGTSICFIATVG  125 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHH---HcCchHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677778888999999999999   89988887776655555444444433 33334444445566555555555


Q ss_pred             HHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHh-hhcchhHHHHH
Q 013096          372 ARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFY-RNIENAAMVAF  420 (449)
Q Consensus       372 ~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~  420 (449)
                      .....|.+|+++|++.++......+++...++..|+.. +..+....+..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~  175 (413)
T PRK15403        126 YVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI  175 (413)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            67778889999999999988877777665566655443 44455554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.50  E-value=3.3e-06  Score=83.75  Aligned_cols=132  Identities=17%  Similarity=0.151  Sum_probs=90.1

Q ss_pred             hhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 013096          283 APTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLF  360 (449)
Q Consensus       283 ~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  360 (449)
                      .|.+.++ + ++.+.+...+.+.++..++..+.+++.|   |+++|+.+..+..+.+++........ +.+.......+.
T Consensus        14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d---~~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~   89 (377)
T PRK11102         14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMAD---SFGRKPVILGGTLVFALAAVACALAQ-TIDQLIYMRFLH   89 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHh---hcCChHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHH
Confidence            3444433 2 4566788888888899999999999999   78888877766655555444333332 333344445566


Q ss_pred             HHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHh-HHhhhcchhHHH
Q 013096          361 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLR-GFYRNIENAAMV  418 (449)
Q Consensus       361 ~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~  418 (449)
                      +++.+...+...++..|..|+|+|++++++.+...+++...++..+ .+.+..+....+
T Consensus        90 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  148 (377)
T PRK11102         90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIF  148 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence            7777777888888999999999999999998877777655555444 334444544433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.50  E-value=8.2e-06  Score=81.56  Aligned_cols=133  Identities=14%  Similarity=0.022  Sum_probs=86.5

Q ss_pred             hhhhccC--CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 013096          283 APTLVAD--GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLF  360 (449)
Q Consensus       283 ~p~~~~~--~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  360 (449)
                      .|.+.++  .++.+.+.+.+.+.++..++..+.+++.|   |+++|+.+..+..+..++.......+ +.+..+....+.
T Consensus        31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D---r~grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~  106 (394)
T PRK11652         31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSD---RVGRRPVILVGMSIFILGTLVALFAH-SLTVLIAASAIQ  106 (394)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH---hcCChHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHH
Confidence            4544433  24556788888888999999999999999   78888877766555544444333332 333344444555


Q ss_pred             HHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhH-HhhhcchhHHHH
Q 013096          361 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRG-FYRNIENAAMVA  419 (449)
Q Consensus       361 ~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  419 (449)
                      +++.+...+....+..|..|+++|++..+..+.....+...++..++ +.+..+....+.
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~  166 (394)
T PRK11652        107 GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYL  166 (394)
T ss_pred             HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence            66666666777777788888888999888877766665544444443 334445444333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.50  E-value=3.7e-06  Score=83.39  Aligned_cols=150  Identities=15%  Similarity=-0.017  Sum_probs=90.6

Q ss_pred             hhhhccC--CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 013096          283 APTLVAD--GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLF  360 (449)
Q Consensus       283 ~p~~~~~--~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  360 (449)
                      .|.+.++  -++.+.|++.+.+.++.+++....+++.|   |+++|+.+............ .....++...++..-.+.
T Consensus        14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~D---r~grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~R~l~   89 (368)
T TIGR00903        14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLD---RAFKRWFLFGSLATFAAAAG-RLLDPFNYEWLLACQLLA   89 (368)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHHHHHHHHHHHHHHH-HHHHhccHHHHHHHHHHH
Confidence            4555443  24566788888888999999999999999   78866655433322222211 111112333344444556


Q ss_pred             HHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHH-hhhcchhHHHHH-HHHHHHHHHHHHHHHHH
Q 013096          361 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGF-YRNIENAAMVAF-AALGLFIAAGCMHVLKR  437 (449)
Q Consensus       361 ~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  437 (449)
                      +++.|.. +......+|.+|+++|++++++.+....++...++..+.. .++.+....+.. ++++++........+++
T Consensus        90 G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903        90 ALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPA  167 (368)
T ss_pred             HhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6777754 4444555889999999999999988877776555555444 345565554443 44444444333444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.49  E-value=5.7e-06  Score=81.55  Aligned_cols=115  Identities=16%  Similarity=0.218  Sum_probs=77.3

Q ss_pred             HHhhhh-hccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHH
Q 013096          280 ILWAPT-LVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVAL  356 (449)
Q Consensus       280 ~~~~p~-~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~  356 (449)
                      ..+.|. +.++ + ++.+.+++.+...++..++..+.+++.|   |+++|+.+..+..+.+++.....+..++.+..+..
T Consensus        21 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   97 (366)
T TIGR00886        21 SPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVD---KFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLL   97 (366)
T ss_pred             HHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            345664 3332 2 4556788888888999999999999999   78888887776666555544444333133333344


Q ss_pred             HHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHH
Q 013096          357 FCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAA  398 (449)
Q Consensus       357 ~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~  398 (449)
                      .++.+++.+. .+....+..+..|+++|+++.++.....+.+
T Consensus        98 ~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  138 (366)
T TIGR00886        98 RLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMG  138 (366)
T ss_pred             HHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHH
Confidence            4445555443 4456678889999999999999877555544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.47  E-value=4.4e-06  Score=84.65  Aligned_cols=120  Identities=15%  Similarity=0.078  Sum_probs=80.1

Q ss_pred             hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh--cchhHHHHHHHHHHhHHHHhhh
Q 013096           84 YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI--TAHPSVWVANICLSLASSIFSF  160 (449)
Q Consensus        84 ~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~--~s~~~l~~~R~l~Glg~~~~~~  160 (449)
                      .|.+ .+.+.......++..++.+++++++||+||||++..+..++.++.+ ..+.  +|.+.+++.-++.|++.+....
T Consensus       256 l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~  334 (428)
T PF13347_consen  256 LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFV  334 (428)
T ss_pred             hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccc
Confidence            4444 4566777778888899999999999999999999999999888765 4444  4899999999999999987765


Q ss_pred             hhHHHHHHHHHh---hcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013096          161 NFETWVAIEHEK---QGQRQDILSDTFWLMTFFESAALIGGQVLANWL  205 (449)
Q Consensus       161 ~~~a~~v~~~~~---r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l  205 (449)
                      ...+ +.+|..+   ....+++-+..++..++..-++..+++.+.+.+
T Consensus       335 ~~~a-~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  335 IPWA-MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             cccc-ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            5443 3333211   111223334555555544444444444444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.45  E-value=2.7e-06  Score=70.88  Aligned_cols=110  Identities=19%  Similarity=0.112  Sum_probs=74.6

Q ss_pred             HHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCC
Q 013096          301 SLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVP  380 (449)
Q Consensus       301 ~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p  380 (449)
                      .+.++..+++...+++.|   |+++|+.+..+.....+......... +.+.......+.+++.+...+....+..|..|
T Consensus         6 ~~~~~~~~~~~~~g~~~d---~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTD---RFGRKPVLLVGLFIFVLSTAMFALSS-NITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             eehhHHHHHHhhHHHHHh---hcchhHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            345677788899999999   78888776665544444443333322 33334445566677778788888899999999


Q ss_pred             CcchhHHHHhhHHHHHHHHHHHHHHh-HHhhhcch
Q 013096          381 NELRGGMISLSLAPANAAILLFLLLR-GFYRNIEN  414 (449)
Q Consensus       381 ~~~rg~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~  414 (449)
                      +++|+++.+..+...+.+...++..+ ...+..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  116 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGW  116 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccch
Confidence            99999999998887777654454443 33344444

>PRK09848 glucuronide transporter; Provisional

Probab=98.45  E-value=1.3e-05  Score=81.67  Aligned_cols=125  Identities=15%  Similarity=0.144  Sum_probs=81.8

Q ss_pred             HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh--cchhHHHHHHHHHHhHHHHhh
Q 013096           83 YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI--TAHPSVWVANICLSLASSIFS  159 (449)
Q Consensus        83 ~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~--~s~~~l~~~R~l~Glg~~~~~  159 (449)
                      .+|.++.+.+.......++..++.++.|+++||+|+|+++.++.++..++.+ ..+.  ++.+.+++..++.|+|.+...
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~  337 (448)
T PRK09848        258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM  337 (448)
T ss_pred             ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence            4566655444444444566778889999999999999999999887777654 3333  367777778889999988777


Q ss_pred             hhhHHHHHHHHHhhc---CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 013096          160 FNFETWVAIEHEKQG---QRQDILSDTFWLMTFFESAALIGGQVLANWLVGI  208 (449)
Q Consensus       160 ~~~~a~~v~~~~~r~---~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~  208 (449)
                      +...+ +..|..+.+   .+++..+..++..++..-++..+++.+.+.+.+.
T Consensus       338 ~~~~a-l~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        338 TVMWA-LEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHH-HHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66544 333332111   1223345566666666666666777777666543

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.43  E-value=1.6e-06  Score=64.91  Aligned_cols=65  Identities=18%  Similarity=0.198  Sum_probs=54.0

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH
Q 013096           64 SLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL  128 (449)
Q Consensus        64 ~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~  128 (449)
                      ++-....+-..|+.+...++.|+|+.|+|.+.++..+...++.|++|.++||+||+|..+....+
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33344444567888777789999999999999999999999999999999999999998765543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.39  E-value=2.2e-05  Score=79.15  Aligned_cols=121  Identities=7%  Similarity=0.111  Sum_probs=88.1

Q ss_pred             hhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcc--cchhHHHHHHH
Q 013096          282 WAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD--YQEIGILVALF  357 (449)
Q Consensus       282 ~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~--~~~~~~~~~~~  357 (449)
                      ..|.+.++ + ++.+.|++.+....+..+++...+++.|   |+++|+.+..+..+.+++.......  .++.+..+...
T Consensus        25 l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~---r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~  101 (410)
T TIGR00885        25 MVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK---KLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGL  101 (410)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            45666543 2 4556888888888999999999999999   8999988887776665554432211  12334445556


Q ss_pred             HHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHH
Q 013096          358 CLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLL  405 (449)
Q Consensus       358 ~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~  405 (449)
                      ++.+++.|...+..+.+..+..|++.|++.+++.+...+++...++.+
T Consensus       102 ~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i  149 (410)
T TIGR00885       102 FILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVV  149 (410)
T ss_pred             HHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888888888889999999999998887777765444443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.35  E-value=2.5e-05  Score=80.92  Aligned_cols=106  Identities=14%  Similarity=0.138  Sum_probs=77.4

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHhhhhh
Q 013096          294 HLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQ-----EIGILVALFCLFHACVGLIL  368 (449)
Q Consensus       294 ~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~~~g~~~  368 (449)
                      ..+.+.+...++.++|..+.+++.|   |+|+|+.+..+.++..++..+.....+     +....+..-++.+++.|...
T Consensus        57 ~~~~~~~~~~ig~~ig~~~~g~l~d---~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~  133 (502)
T TIGR00887        57 VSAAVNGSASIGTLAGQLFFGWLAD---KLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY  133 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence            3567777888899999999999999   899888877665544443333333221     12334455567788889889


Q ss_pred             hHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHH
Q 013096          369 PSLARLRTMYVPNELRGGMISLSLAPANAAILLF  402 (449)
Q Consensus       369 p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~  402 (449)
                      |....+.+|.+|++.||+++++.+.....+...+
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g  167 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG  167 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998877666654333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.32  E-value=8.4e-08  Score=99.30  Aligned_cols=246  Identities=11%  Similarity=0.026  Sum_probs=3.0

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHH----h------------
Q 013096           76 FGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKS----I------------  138 (449)
Q Consensus        76 ~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~----~------------  138 (449)
                      .+..+.++|+++.+|.|++.+.+=++..+..++..++.+|-.|=|.+-++.++.+++++ +++    .            
T Consensus        25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~  104 (539)
T PF03137_consen   25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSN  104 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccc
Confidence            34466679999999999999999899999999999999985444445455555444332 110    0            


Q ss_pred             --------------------------------c--chhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHH
Q 013096          139 --------------------------------T--AHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTF  184 (449)
Q Consensus       139 --------------------------------~--s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~  184 (449)
                                                      .  -++.++++.++.|+|.+..++...+ |++|+.++..    .+...
T Consensus       105 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t-YiDDnv~~~~----splYi  179 (539)
T PF03137_consen  105 GNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT-YIDDNVSKKN----SPLYI  179 (539)
T ss_dssp             -----------------------------------------------SSS------------------------------
T ss_pred             cccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee-eecccccccc----Cccch
Confidence                                            0  1467899999999999988887654 7788753332    22233


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhcccc---------------cCCcchhHHH----HHHHHHHHHHHHH---hccccCCC-
Q 013096          185 WLMTFFESAALIGGQVLANWLVGIDV---------------KKGVVPSSTA----SVFLSILGIICVS---RGWTENPK-  241 (449)
Q Consensus       185 ~~~~~~~~~~~i~a~~lg~~l~~~~~---------------~~g~~~~f~~----~~~~~~~~~~~i~---~~~~e~~~-  241 (449)
                      +.......+++.+|-++|+..+..+.               +-+|...+|+    .+.+.++..+.+.   +.+|++++ 
T Consensus       180 Gi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~  259 (539)
T PF03137_consen  180 GILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSER  259 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccc
Confidence            43333444555555555555443210               1123333443    2322222222222   23333300 


Q ss_pred             ------C--Ccc----h----h--h-------h---hhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC---
Q 013096          242 ------M--AFD----D----Y--R-------T---SFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADG---  290 (449)
Q Consensus       242 ------~--~~~----~----~--~-------~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---  290 (449)
                            +  +.+    +    .  .       +   ...+.+++||.++...+...+-......+ ..+.|.|++..   
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~-~tF~pKylE~QF~~  338 (539)
T PF03137_consen  260 QEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGF-ATFLPKYLESQFGL  338 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCC
Confidence                  0  000    0    0  0       0   12456778887776655444333332233 45689998753   


Q ss_pred             CccchHHHHHHHH-HHHHHhhhHHHHHhcCCCCCCchhH
Q 013096          291 REVHLGLIFPSLL-GARMLGSTVFPWLISGPSSFRTEDC  328 (449)
Q Consensus       291 ~~~~~g~i~~~~~-~~~~lg~~l~~~l~~~~~~~~~~~~  328 (449)
                      ++...+.+.+... .+.++|..++|.+++|. |.+.++.
T Consensus       339 sas~A~~l~G~v~ip~~~~G~llGG~ivkk~-kl~~~~~  376 (539)
T PF03137_consen  339 SASQASLLTGIVSIPGAALGILLGGYIVKKF-KLSARGA  376 (539)
T ss_dssp             ---------------------------------------
T ss_pred             CHHHHHHHHhhhhcchhheehheEEEEEEEe-cCcHHHH
Confidence            2233333333333 25667888888888743 3444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00898 2A0119 cation transport protein

Probab=98.29  E-value=1.3e-05  Score=83.04  Aligned_cols=116  Identities=20%  Similarity=0.249  Sum_probs=84.9

Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHH
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSL  371 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~  371 (449)
                      +...++..+.+.++.++|+.+.+++.|   |+|+|+.+..+..+.+++.+...+.+ +.+..++...+.+++.+...+..
T Consensus       126 ~~~~~~~~s~~~~g~~~g~~~~g~l~D---r~Grr~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~  201 (505)
T TIGR00898       126 AWKVDLTQSCFFVGVLLGSFVFGYLSD---RFGRKKVLLLSTLVTAVSGVLTAFSP-NYTVFLVFRLLVGMGIGGIWVQA  201 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhh---hccchHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhccchHHHH
Confidence            345678888888999999999999999   88988887776655555544444433 34444555566778888888999


Q ss_pred             HHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhh
Q 013096          372 ARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRN  411 (449)
Q Consensus       372 ~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~  411 (449)
                      .++..|.+|+++|+.+.++.+.....+.+.++..+.+..+
T Consensus       202 ~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  241 (505)
T TIGR00898       202 VVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD  241 (505)
T ss_pred             HHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999999988876666665444444444433

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.27  E-value=4.4e-05  Score=76.60  Aligned_cols=149  Identities=12%  Similarity=0.086  Sum_probs=100.5

Q ss_pred             hhhhccC-C-Cccc-hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 013096          283 APTLVAD-G-REVH-LGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCL  359 (449)
Q Consensus       283 ~p~~~~~-~-~~~~-~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  359 (449)
                      .|.+..+ + ++.+ .|.+++.+..+..+.....+++.|   |++.|+.+..+.+.-++...+..+.. +...+.+.=++
T Consensus        49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaD---rlG~K~vL~l~~l~Wsl~t~L~~fa~-Sl~~L~i~R~l  124 (511)
T TIGR00806        49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTD---YLRYKPVLVLQALSFVCVWLLLLLGT-SVWHMQLMEVF  124 (511)
T ss_pred             HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4544433 2 4556 899999999999999999999999   89999988776655554444433432 33334455567


Q ss_pred             HHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhcc---hhHHHHHHHHHHHHHHHHHHHHH
Q 013096          360 FHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNIE---NAAMVAFAALGLFIAAGCMHVLK  436 (449)
Q Consensus       360 ~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~  436 (449)
                      +|++.|..+ +...++.+.+|+++|+++.|..+....++...+..++....+.+   +.....+...+..++....++++
T Consensus       125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            788888888 88899999999999999999999888877544444333343433   23333344444444555555554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.26  E-value=0.00053  Score=68.17  Aligned_cols=141  Identities=11%  Similarity=-0.011  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH-HHHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHH
Q 013096           89 EQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG-VWKSITAHPSVWVANICLSLASSIFSFNFETWVA  167 (449)
Q Consensus        89 ~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~-l~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v  167 (449)
                      +..|.+.+.+.+.-.+.-.+..++-+|+|.|+.++++..+.++=- .+++++|.+.+.+.+.++|+-.+....+.- -++
T Consensus       259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f-kYI  337 (412)
T PF01306_consen  259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF-KYI  337 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            446666666666655555678999999999999999888776633 478899999999999999998876554432 244


Q ss_pred             HHHHhhcCChhhHHHHHHHH-HHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccc
Q 013096          168 IEHEKQGQRQDILSDTFWLM-TFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWT  237 (449)
Q Consensus       168 ~~~~~r~~~~~~l~~~~~~~-~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~  237 (449)
                      +++    ++++..+..+... +...+++.++-+.++|.+-+..   |.+..|++...+.+...++..+.++
T Consensus       338 ~~~----fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~---G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  338 TAH----FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI---GFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHH----S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHh----CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc---CcHHHHHHHHHHHHHHHHHheeeec
Confidence            443    4555555555543 3445566666677788887765   7777887655444433333333333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.26  E-value=4e-05  Score=70.83  Aligned_cols=137  Identities=12%  Similarity=0.132  Sum_probs=89.3

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhHHHHhhhh
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFN  161 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~~~~s~~~l~~~R~l~Glg~~~~~~~  161 (449)
                      +.+|+|+.+.+.+.+.-+..+++..|+.|.++||+||+-..+.+..+..+..=..+.-+++.=+.+..+.|++.+..-  
T Consensus       293 ~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllA--  370 (459)
T KOG4686|consen  293 KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLA--  370 (459)
T ss_pred             HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHH--
Confidence            589999999898888888888889999999999999999887765554443211112233333566678888765431  


Q ss_pred             hHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHH
Q 013096          162 FETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVF  223 (449)
Q Consensus       162 ~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~  223 (449)
                      ..-|-.-   +.-.|+++++.+++..+....++..+-|++++.+.+...+..|.-.|.+...
T Consensus       371 cslWP~v---a~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~  429 (459)
T KOG4686|consen  371 CSLWPCV---ASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG  429 (459)
T ss_pred             HHHhhhh---hhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence            1112110   1124566788888887777777766778888888775422334445555433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.24  E-value=6.9e-05  Score=77.01  Aligned_cols=121  Identities=10%  Similarity=0.027  Sum_probs=76.9

Q ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHH-----hcchhHHHHHHHHHHhHHHHhhh
Q 013096           87 AKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKS-----ITAHPSVWVANICLSLASSIFSF  160 (449)
Q Consensus        87 s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~-----~~s~~~l~~~R~l~Glg~~~~~~  160 (449)
                      ++.+.+.+.....++..++.+++|+++||+|||++++++..+..++.+ ...     .++.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            445556565655577788889999999999999999888776665543 211     24566777777888888887665


Q ss_pred             hhHHHHHHHHHhhc---CChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 013096          161 NFETWVAIEHEKQG---QRQDILSDTFWLMTFFESAALIGGQVLANWLVGI  208 (449)
Q Consensus       161 ~~~a~~v~~~~~r~---~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~  208 (449)
                      ...+ +++|..+.+   ..++.-+..++..++..-++..+++.+.+++.+.
T Consensus       344 ~~~a-m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        344 LQVI-MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             HHHH-HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5433 344442111   1122234466666666555566677777766553

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.20  E-value=2.2e-05  Score=82.25  Aligned_cols=265  Identities=13%  Similarity=0.055  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHHH----HHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHH
Q 013096           57 RNFLLLFSLASVMEGLWSVFG----EYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFV  132 (449)
Q Consensus        57 ~~~~~~~~l~~~~~~~~~~~~----~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~  132 (449)
                      +.++.++.+..+.+.+..-+.    -.+-+.|+++.++.|++.+.+=++..+...+..+..-|.-|-|.+-+++++.+++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lg  175 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLG  175 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHH
Confidence            344555555555554433222    2444689999999887766666666666777888888887777777777777665


Q ss_pred             HH-HHHh--------------------c-----------------------------c--hh-HHHHHHHHHHhHHHHhh
Q 013096          133 GV-WKSI--------------------T-----------------------------A--HP-SVWVANICLSLASSIFS  159 (449)
Q Consensus       133 ~l-~~~~--------------------~-----------------------------s--~~-~l~~~R~l~Glg~~~~~  159 (449)
                      ++ +++-                    +                             +  .+ .++++.++.|+|....+
T Consensus       176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~  255 (735)
T KOG3626|consen  176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF  255 (735)
T ss_pred             HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence            54 3210                    0                             0  12 57788999999998877


Q ss_pred             hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc------------cCCcchhHHHH----HH
Q 013096          160 FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV------------KKGVVPSSTAS----VF  223 (449)
Q Consensus       160 ~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~------------~~g~~~~f~~~----~~  223 (449)
                      +...+ +++|+.++.    .....++.+.....++|++|-++|+++...+.            +-+|...+|++    ..
T Consensus       256 tlGis-YiDDnvk~~----~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~  330 (735)
T KOG3626|consen  256 TLGIS-YIDDNVKKK----NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA  330 (735)
T ss_pred             cCCCc-ccccccccc----CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence            66544 677764433    23344555555566677777777777654331            12344445543    33


Q ss_pred             HHHHHHHHHHhccccCCCCC--------------cc---h---------hhhhhhHhhhcChhHHHHHHHHHHHHHHHHH
Q 013096          224 LSILGIICVSRGWTENPKMA--------------FD---D---------YRTSFFTYIFGDKRIWLLVLAQACLQFSIAL  277 (449)
Q Consensus       224 ~~~~~~~~i~~~~~e~~~~~--------------~~---~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  277 (449)
                      +.++..+.++...+|.+++.              ++   +         ......+.+++||.++...+...+-...+..
T Consensus       331 ~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G  410 (735)
T KOG3626|consen  331 LLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITG  410 (735)
T ss_pred             HHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence            33333333333222222110              00   0         0012457788898888777655544433333


Q ss_pred             HHHHhhhhhccCCCcc---chHHHHHHHHH-HHHHhhhHHHHHhcCCCCCCchhH
Q 013096          278 FWILWAPTLVADGREV---HLGLIFPSLLG-ARMLGSTVFPWLISGPSSFRTEDC  328 (449)
Q Consensus       278 ~~~~~~p~~~~~~~~~---~~g~i~~~~~~-~~~lg~~l~~~l~~~~~~~~~~~~  328 (449)
                      + ..++|.|++...+.   ....+.+...+ +..+|..++|++++|. |.+.+..
T Consensus       411 ~-~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf-kl~~r~~  463 (735)
T KOG3626|consen  411 Y-ITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF-KLSARGA  463 (735)
T ss_pred             H-HHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee-cccHHHH
Confidence            3 45689998753222   22233322222 3456777778877732 3444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=1.6e-05  Score=76.95  Aligned_cols=137  Identities=17%  Similarity=0.197  Sum_probs=101.3

Q ss_pred             CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhh
Q 013096          290 GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILP  369 (449)
Q Consensus       290 ~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p  369 (449)
                      .++.+.|++|+...+...+.+.+.|.+.|   |++.+-.+.+++.++.....+.++.. +.+.++++=.+=+++......
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~---~iGy~ipm~~Gl~vmf~sTilFafg~-sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLID---RIGYKIPMVAGLFVMFLSTILFAFGN-SYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHH---HhccccHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHhhhhHHHHHh
Confidence            35677999999999999999999999999   89988888888777766655555543 334445455566777777788


Q ss_pred             HHHHHHhccCCCcc-hhHHHHhhHHHHHHHHHHHHHHhHH-hhhcchhHHHHHHHHHHHHHHH
Q 013096          370 SLARLRTMYVPNEL-RGGMISLSLAPANAAILLFLLLRGF-YRNIENAAMVAFAALGLFIAAG  430 (449)
Q Consensus       370 ~~~~~~~~~~p~~~-rg~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~l~~~~  430 (449)
                      +..++..+.+|+|. ||+++|..-...+++.+.++..|++ ++..|.+..+...++.++.-..
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~  241 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGA  241 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHH
Confidence            88888899999875 7999999887777776666666654 5556777766665555554433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.0052  Score=61.94  Aligned_cols=75  Identities=8%  Similarity=-0.040  Sum_probs=59.0

Q ss_pred             HHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHH
Q 013096           96 CAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEHE  171 (449)
Q Consensus        96 ~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~  171 (449)
                      ++-+....+..++.+++.|+.|.|-.+.++...|..--+..+-+|-+-+++.-.+.|+|.+..+..- .-+..|+.
T Consensus        57 aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~Gq-G~ylt~~s  131 (461)
T KOG3098|consen   57 AIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQ-GGYLTSNS  131 (461)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheeccc-ceehhhcC
Confidence            3444455566778999999999999999999999876665566788999999999999999877553 33666664

>TIGR00788 fbt folate/biopterin transporter

Probab=98.11  E-value=4.4e-05  Score=78.30  Aligned_cols=123  Identities=10%  Similarity=-0.089  Sum_probs=87.0

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH-H---------hcchhHHHHHHHH
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK-S---------ITAHPSVWVANIC  150 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~-~---------~~s~~~l~~~R~l  150 (449)
                      +..|.|++++|.+...+.++..++....+.+.+|++.|+++.++.++..++.+ .. .         .++.+..+..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            46899999999998888899999999999999999999999999988887653 21 0         1444456666788


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID  209 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~  209 (449)
                      ++++.+..+..... ++.+..+    ++..+..++..+...+++..+++.+++.+.+..
T Consensus       361 ~~~~~g~~~~~~~~-~~~~~~p----~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       361 AEVLAQLKFMPFLV-LLARLCP----SGCESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHHHccHHH-HHHHhCC----CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888766655433 4444433    333445566555555666667777777776644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PTZ00207 hypothetical protein; Provisional

Probab=98.04  E-value=0.0003  Score=73.43  Aligned_cols=149  Identities=11%  Similarity=0.084  Sum_probs=84.9

Q ss_pred             hhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc-----chhHHHH
Q 013096          282 WAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY-----QEIGILV  354 (449)
Q Consensus       282 ~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-----~~~~~~~  354 (449)
                      ..|.+.++ + +..+.+.+.... ..........|++.|   |+++++++.++.++.+++.....+..     .+.+.+.
T Consensus        49 ~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~D---r~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~  124 (591)
T PTZ00207         49 ISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYD---YLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS  124 (591)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence            45555433 2 334455554432 222344557899999   89999988877666555544443321     2333344


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHH-HHHHHHhHHh-hhcchhHHHHHHHHHHHHHHHHH
Q 013096          355 ALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAI-LLFLLLRGFY-RNIENAAMVAFAALGLFIAAGCM  432 (449)
Q Consensus       355 ~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~l~~~~~~  432 (449)
                      +..++.+.+.+...+.......+.+| +.||++.|+.....+++. +.+++...+. ++. ....+..+..+++++...+
T Consensus       125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~-~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNT-SAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence            44556667777777777777788887 679999999888777764 2333333333 222 2333344444444444444


Q ss_pred             HHHH
Q 013096          433 HVLK  436 (449)
Q Consensus       433 ~~~~  436 (449)
                      ..++
T Consensus       203 ~~vr  206 (591)
T PTZ00207        203 VFMR  206 (591)
T ss_pred             hhee
Confidence            4433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.04  E-value=4.6e-05  Score=80.98  Aligned_cols=115  Identities=12%  Similarity=0.006  Sum_probs=82.6

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc-----------------------
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY-----------------------  347 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-----------------------  347 (449)
                      +..+.|++.+.+.++..++..+.+++.|   |.+++|.+..+.++.+++.++.+..+                       
T Consensus        66 ss~~~G~i~s~~~i~~~~~~i~v~~~~~---r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~  142 (633)
T TIGR00805        66 STSSSGLINGSYEIGNLLLIIFVSYFGT---KLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANS  142 (633)
T ss_pred             CCCcceeeeehhhHHHHHHHHHHHHhhc---ccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccc
Confidence            4566788888888999999999999999   78888877766655555544333221                       


Q ss_pred             --------------------------c-hhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHH
Q 013096          348 --------------------------Q-EIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAIL  400 (449)
Q Consensus       348 --------------------------~-~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~  400 (449)
                                                . ....++++-++.+++.+..++...+++.|.+|++.|+..+|+......++..
T Consensus       143 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~  222 (633)
T TIGR00805       143 FLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPA  222 (633)
T ss_pred             ccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhH
Confidence                                      0 0112334455667777778888889999999999999999998887777655


Q ss_pred             HHHHHhHH
Q 013096          401 LFLLLRGF  408 (449)
Q Consensus       401 ~~~~~g~~  408 (449)
                      .+.+.+++
T Consensus       223 lG~llgg~  230 (633)
T TIGR00805       223 FGYLLGSF  230 (633)
T ss_pred             HHHHHHHH
Confidence            55555443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.92  E-value=0.0081  Score=63.88  Aligned_cols=155  Identities=14%  Similarity=0.079  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHHHHHHHHHHHHH-HHHhc--c------hhH
Q 013096           74 SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCLIFFILHLFVGV-WKSIT--A------HPS  143 (449)
Q Consensus        74 ~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll~~~~~~~~~~l-~~~~~--s------~~~  143 (449)
                      ..+...+.+.+|.++++...++..+....-+...++|.++|++ ||++.++.+.+++.++.+ .++..  +      ...
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            3344344457888888877777766666667788999999986 999999999888877654 33321  1      123


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccc----cCCcchhHH
Q 013096          144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDV----KKGVVPSST  219 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~----~~g~~~~f~  219 (449)
                      .+++=.+.++|.|..-|+..+ +..|..+. ...+...+.+........++.++++.+..++.+...    ..+|...|.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsa-f~gdqf~~-~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSA-FGGDQFEE-RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             HHHHHHHHHhhccccccCchh-hhHhhcCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            555666777788777777654 33332111 112235556666555566666777776666653210    125777888


Q ss_pred             HHHHHHHHHHH
Q 013096          220 ASVFLSILGII  230 (449)
Q Consensus       220 ~~~~~~~~~~~  230 (449)
                      +..+..+++++
T Consensus       166 i~~i~m~ia~l  176 (654)
T TIGR00926       166 VPAILMILALI  176 (654)
T ss_pred             HHHHHHHHHHH
Confidence            76666555544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.92  E-value=9.6e-05  Score=55.96  Aligned_cols=74  Identities=8%  Similarity=-0.051  Sum_probs=64.3

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHH
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSV  144 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l  144 (449)
                      ...+|.+|.+.+|.++|.+|.+++.++.+++++++++....+.++..+++.+..+.+.-.++.+ +++.++++..
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            3568999999999999999999999999999999999999999998888888888888777766 7777776544

Note that many members are hypothetical proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.92  E-value=0.0021  Score=63.05  Aligned_cols=208  Identities=11%  Similarity=0.009  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCCCCCCcchh-----hhHHHHHHHHHHHHHhhhhhHHHHHHH-HHhCCChHHHH
Q 013096           19 FIFLSCFFSIFLLPSKSSSSSSSSLFDHSNSSSFVP-----FQRNFLLLFSLASVMEGLWSVFGEYEL-VYYGVAKEQMM   92 (449)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~g~s~~~ig   92 (449)
                      .+...++..+..+|+.++.++...+.++...+..++     -.++++...++.+++..+|-+.+.+.- +-||+|..|..
T Consensus       168 ~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT  247 (403)
T PF03209_consen  168 ALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETT  247 (403)
T ss_pred             HHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHH
Confidence            334466666777776665421111111111111111     124556666777777777766665443 46999998877


Q ss_pred             HHHHHHHHhHHHHHHHHHhhhh-hhCchHHHHHHHHHHHHHH--H--HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHH
Q 013096           93 LLLCAGFSAALFVGSFLGMISD-LIGQKKVCLIFFILHLFVG--V--WKSITAHPSVWVANICLSLASSIFSFNFETWVA  167 (449)
Q Consensus        93 ~l~~~~~~~~~l~~~~~G~laD-r~GRr~~ll~~~~~~~~~~--l--~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v  167 (449)
                      .+......+.+++-...|.+.. |.|+|+...+++..-.++.  +  .+..++.+.+-..-++.|+|.|......-+.+.
T Consensus       248 ~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM  327 (403)
T PF03209_consen  248 RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMM  327 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            6666555555555556677666 7888888777776655543  2  345578899999999999999986554333222


Q ss_pred             HHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc-------ccCCcchhHHHHHHHHHHHHHH
Q 013096          168 IEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID-------VKKGVVPSSTASVFLSILGIIC  231 (449)
Q Consensus       168 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~-------~~~g~~~~f~~~~~~~~~~~~~  231 (449)
                      + ..    .+++.+..++.+...+..+.-++..+|+.+.+..       +..+|-..|.+-+++.+++..+
T Consensus       328 ~-lt----~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  328 D-LT----SAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             h-CC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            1 11    2223445566666665555445555555443311       1123444555555555555443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.92  E-value=0.00064  Score=69.38  Aligned_cols=118  Identities=10%  Similarity=0.056  Sum_probs=76.0

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCC-CCCCchhHHHHH-HHHHHHHHHHHhcccc------------h-h---HH
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGP-SSFRTEDCLLYA-FVVLGFVFSIIAYDYQ------------E-I---GI  352 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~-~~~~~~~~l~~~-~~~~~~~l~~~~~~~~------------~-~---~~  352 (449)
                      ++...+.++.+..+..++..++.|+++||. .|+|+||..... .....+++..+.+..+            + .   +.
T Consensus        37 ~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~  116 (477)
T TIGR01301        37 PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIV  116 (477)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHH
Confidence            445567777777778888999999999942 358888866543 3333333333333211            0 0   12


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHhccCCCcch--hHHHHhhHHHHHHHHHHHHHHhHH
Q 013096          353 LVALFCLFHACVGLILPSLARLRTMYVPNELR--GGMISLSLAPANAAILLFLLLRGF  408 (449)
Q Consensus       353 ~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~r--g~~~~~~~~~~~~~~~~~~~~g~~  408 (449)
                      .+..+.+..++.+...+...++..|..|+++|  +.+.++.+...+++.+.+...|++
T Consensus       117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~  174 (477)
T TIGR01301       117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY  174 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23444455667777777888999999998876  467888777777776555555544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.89  E-value=0.0022  Score=59.62  Aligned_cols=85  Identities=20%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-H--HH-----hcchhHH
Q 013096           73 WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-W--KS-----ITAHPSV  144 (449)
Q Consensus        73 ~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~--~~-----~~s~~~l  144 (449)
                      .+-+.+.+-+++|.|.+|...+-.+..++..+ +++.|.+.||+|.|.+++++.+...++.. .  ..     .+++|.+
T Consensus        21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence            34556677789999999999988888888765 78999999999999999998877666542 1  11     1467888


Q ss_pred             HHHHHHHHhHHHHh
Q 013096          145 WVANICLSLASSIF  158 (449)
Q Consensus       145 ~~~R~l~Glg~~~~  158 (449)
                      .+..++.|.+.+..
T Consensus       100 ~~~~~l~~~s~~~~  113 (250)
T PF06813_consen  100 CLFLFLGGNSSCWF  113 (250)
T ss_pred             HHHHHHHcccHHHh
Confidence            87777777776543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.87  E-value=0.00028  Score=70.62  Aligned_cols=139  Identities=18%  Similarity=0.212  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 013096          298 IFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY-QEIGILVALFCLFHACVGLILPSLARLRT  376 (449)
Q Consensus       298 i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~~~g~~~p~~~~~~~  376 (449)
                      +++.+..-.-+...++||+.||  -+|.+|.+.++.++..++.+++.... .....+.+++.+..++.|+.=|+..++..
T Consensus        66 l~~~y~slVY~t~i~GG~laDr--~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg  143 (498)
T COG3104          66 LFSAYGSLVYLTPIIGGWLADR--VLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLG  143 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHH
Confidence            4444444334556677888884  47888988888777777777666553 22234556666777899999999999999


Q ss_pred             ccCCCcc--hhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 013096          377 MYVPNEL--RGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAALGLFIAAGCMHVLKRW  438 (449)
Q Consensus       377 ~~~p~~~--rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  438 (449)
                      |.+|+++  |-+.+++..+..|++....++. +.+.++.+++..+..++++.......+...||+
T Consensus       144 ~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         144 ELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             HhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence            9988664  3446777777778776556554 455566777877777777777776666666655

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.0018  Score=65.29  Aligned_cols=121  Identities=21%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh--cchhHHHHHHHHHHhHHHHhhhh
Q 013096           85 GVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI--TAHPSVWVANICLSLASSIFSFN  161 (449)
Q Consensus        85 g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~--~s~~~l~~~R~l~Glg~~~~~~~  161 (449)
                      |-++.+..........+..++.+++.++++|+|||+++.++.+++.++++ ..+.  ++.+.+++..++.++|.+...+.
T Consensus       268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l  347 (467)
T COG2211         268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL  347 (467)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence            33444444455555555555578899999999999999999999988775 4443  47889999999999998876655


Q ss_pred             hHHHHHHHHH-----hhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Q 013096          162 FETWVAIEHE-----KQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGI  208 (449)
Q Consensus       162 ~~a~~v~~~~-----~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~  208 (449)
                      .-+ +++|..     +.+.+.  -+-.++.+++..=++..+++.+.++.+..
T Consensus       348 ~wa-m~~d~vDyge~~TG~R~--eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         348 PWA-MVADTVDYGEWKTGVRR--EGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             cHH-HhcchhhHHHHHhCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322 333331     223332  34456655555444445555555555543

>PRK11462 putative transporter; Provisional

Probab=97.81  E-value=0.002  Score=65.89  Aligned_cols=72  Identities=10%  Similarity=0.073  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhc--chhHHHHHHHHHHhHHHHhhh
Q 013096           89 EQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSIT--AHPSVWVANICLSLASSIFSF  160 (449)
Q Consensus        89 ~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~--s~~~l~~~R~l~Glg~~~~~~  160 (449)
                      ...+.+.....++..++.+++++++||+|||++...+.....+..+ ..+.+  +...+++.-++.|++.+...+
T Consensus       263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  337 (460)
T PRK11462        263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTP  337 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666677788889999999999999997755544433332 22222  233344444566776655443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.79  E-value=9.3e-06  Score=80.01  Aligned_cols=114  Identities=11%  Similarity=0.145  Sum_probs=80.9

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhH
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                      ++...|++-..+.+..++.+++++.+.|   |+++++++.++..+=.++.+...+. ...|...+.=.+.++|.+.+.|.
T Consensus        66 ~~s~~Gll~~vf~v~~~i~sPl~gyLad---ryNR~~v~~vG~~iW~~Av~~~~fs-~~Fwq~~l~R~~vGiGeAs~~~i  141 (493)
T KOG1330|consen   66 SDSELGLLQTVFIVVFMIASPLFGYLAD---RYNRKRVIAVGIFIWTLAVFASGFS-NHFWQVLLCRGFVGIGEASYSPI  141 (493)
T ss_pred             CchhccchhHHHHHHHHHHHHHHHHHHh---hcCcceEEeeHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhccc
Confidence            3445677777888999999999999999   7888777766654444444433333 23343344444557777788899


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHH
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGF  408 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~  408 (449)
                      .++++++.+|+++|++++++++.....+...+-+.|..
T Consensus       142 a~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~  179 (493)
T KOG1330|consen  142 APSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSV  179 (493)
T ss_pred             chhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeee
Confidence            99999999999999999999988777654334333433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.77  E-value=0.00028  Score=73.37  Aligned_cols=124  Identities=21%  Similarity=0.084  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHH
Q 013096          295 LGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARL  374 (449)
Q Consensus       295 ~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~  374 (449)
                      .+++.+...++..+|+++.+++.|   ++|+++.+..+.+...++-++.+... +...+..+=++.+++.|........+
T Consensus        91 ~s~~~s~~~lga~~g~l~~g~l~d---~~GRk~~l~~~~~~~~iG~ii~~~a~-~~~~l~~GR~l~G~g~G~~~~~~piy  166 (513)
T KOG0254|consen   91 QGLLTSILNLGALVGSLLAGRLGD---RIGRKKTLLLAVVLFLIGAIIIALAP-SWYQLIVGRILTGLGVGGASVLAPVY  166 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhccchhhhhhcchhh
Confidence            378888888999999999999999   89999888776655554444444443 44455666677788888877777788


Q ss_pred             HhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhhc--chhHHHHHHH
Q 013096          375 RTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRNI--ENAAMVAFAA  422 (449)
Q Consensus       375 ~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~  422 (449)
                      .+|..|++.||+..+..+.....+...+...+....+.  ++...+..+.
T Consensus       167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~  216 (513)
T KOG0254|consen  167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLAL  216 (513)
T ss_pred             HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHH
Confidence            89999999999999999888887765555445444332  4444444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.00035  Score=71.13  Aligned_cols=136  Identities=15%  Similarity=0.248  Sum_probs=95.5

Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHhhhhhhH
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAY-DYQEIGILVALFCLFHACVGLILPS  370 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~g~~~p~  370 (449)
                      +.+.|++++++..|.+++....+++.+   |+|.|+++..+.++.+++-++... .....+.+++.=++-|++.|..+|+
T Consensus        72 ~~~k~~i~ss~~~G~i~~~iP~g~l~~---k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa  148 (466)
T KOG2532|consen   72 STEKGLIFSSFFWGYILGQIPGGYLAD---KFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPA  148 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHH---HcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhh
Confidence            345789999999999999999999999   899999888776655544332221 1112223334445668888999999


Q ss_pred             HHHHHhccCCCcchhHHHHhhHHHHHHHHHHHH-HHhHHhhh-cchhH-HHHHHHHHHHHHHH
Q 013096          371 LARLRTMYVPNELRGGMISLSLAPANAAILLFL-LLRGFYRN-IENAA-MVAFAALGLFIAAG  430 (449)
Q Consensus       371 ~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~-~~~~~~~~~l~~~~  430 (449)
                      +.....+-.|+++|++..++......++.+... +.|.+.+. .|.+. .++.+.++++...+
T Consensus       149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~  211 (466)
T KOG2532|consen  149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFIL  211 (466)
T ss_pred             hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence            999999999999999999998887777654443 44555555 66544 44555666555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.68  E-value=0.071  Score=52.93  Aligned_cols=44  Identities=18%  Similarity=-0.041  Sum_probs=31.6

Q ss_pred             HHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHH
Q 013096          359 LFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF  402 (449)
Q Consensus       359 l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~  402 (449)
                      .-|+..|..+.+....+.+..|+|+|--.+|.....-+.++..+
T Consensus       344 ~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lA  387 (402)
T PF02487_consen  344 YEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLA  387 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            33566677777766777888899999988888777666665433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.61  E-value=0.004  Score=64.91  Aligned_cols=106  Identities=17%  Similarity=0.136  Sum_probs=71.7

Q ss_pred             hhhccC-CCccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 013096          284 PTLVAD-GREVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHA  362 (449)
Q Consensus       284 p~~~~~-~~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  362 (449)
                      |.+..| |......++.....++..++..+.|+++|   .+|||.....+.++..++..+.+..+ +....+.+..+.++
T Consensus        68 ~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSD---lfGRr~~~i~g~~l~vvG~Iv~atA~-~~~~~iag~~l~Gv  143 (599)
T PF06609_consen   68 PYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSD---LFGRRYFFIIGSLLGVVGSIVCATAQ-NMNTFIAGMVLYGV  143 (599)
T ss_pred             HHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHH---HhcchHHHHHHHHHHHhHHHHhhcCC-cHHHHHHHHHHHHH
Confidence            333334 44455667777777888888999999999   89988877776666555555444433 44455667777777


Q ss_pred             HhhhhhhHHHHHHhccCCCcchhHHHHhhHHH
Q 013096          363 CVGLILPSLARLRTMYVPNELRGGMISLSLAP  394 (449)
Q Consensus       363 ~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~  394 (449)
                      +.|... ......+|..|++.|+...++...+
T Consensus       144 gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~  174 (599)
T PF06609_consen  144 GAGVQE-LAALAISELVPNKWRGLGLAIASIP  174 (599)
T ss_pred             hhHHHH-HHHHHHHHhcccchhhhHhHHHHHH
Confidence            776554 3344578999999997766554443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.44  E-value=0.052  Score=52.78  Aligned_cols=95  Identities=13%  Similarity=0.135  Sum_probs=53.7

Q ss_pred             hhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhh-----hhCchHHHHH-HHHHHHHHHH-HH-------
Q 013096           71 GLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISD-----LIGQKKVCLI-FFILHLFVGV-WK-------  136 (449)
Q Consensus        71 ~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laD-----r~GRr~~ll~-~~~~~~~~~l-~~-------  136 (449)
                      ++++ ..|.+.+.-|.|-++.+ +++..+-+.-+ -+.+.|+.|     |+||||.-++ +..+.+..++ ..       
T Consensus        48 GL~~-~iP~lL~ak~vSyt~~a-~fS~ay~P~sL-KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~  124 (510)
T KOG3574|consen   48 GLIG-AIPLLLQAKGVSYTSQA-IFSFAYWPFSL-KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGL  124 (510)
T ss_pred             hHhh-hhHHHhcCCCcchhhhh-hhhhhhhHHHH-HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCccc
Confidence            3444 45677777888877765 45555555433 568999999     9999998654 2222222111 11       


Q ss_pred             ----HhcchhHHHHHHHHHHhHHHHhhhhhHHHHHH
Q 013096          137 ----SITAHPSVWVANICLSLASSIFSFNFETWVAI  168 (449)
Q Consensus       137 ----~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~  168 (449)
                          -.+|...+...-++.-+..+..-.+.+.|...
T Consensus       125 g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt  160 (510)
T KOG3574|consen  125 GGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT  160 (510)
T ss_pred             ccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence                12344444444455555555555555566543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.40  E-value=0.0013  Score=63.54  Aligned_cols=112  Identities=14%  Similarity=0.168  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHH
Q 013096          295 LGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARL  374 (449)
Q Consensus       295 ~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~  374 (449)
                      .|++-+.+++...+.+...|.++|   +.|+|.++.++....++...+.+... +....+..=.+.|...|.. ....++
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD---~yGRkpvll~c~~~va~s~ll~~~S~-~F~afv~aR~l~Gi~kgnl-~v~rAi  144 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSD---RYGRKPVLLACLIGVALSYLLWALSR-NFAAFVLARFLGGIFKGNL-SVIRAI  144 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhh---hhCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhccCch-HHHHHH
Confidence            577777888999999999999999   78888777766555555444433332 2211122123445545543 456788


Q ss_pred             HhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhhh
Q 013096          375 RTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYRN  411 (449)
Q Consensus       375 ~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~~  411 (449)
                      ++|.+++|.|+.+++......+++.+.++.+|++...
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999999999988888887777777776544

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.025  Score=55.46  Aligned_cols=112  Identities=16%  Similarity=0.083  Sum_probs=76.8

Q ss_pred             chhhhHHHHHHHHHHHHH----hhhhhHHHHHHHHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHH
Q 013096           52 FVPFQRNFLLLFSLASVM----EGLWSVFGEYELVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFF  126 (449)
Q Consensus        52 ~~~~~~~~~~~~~l~~~~----~~~~~~~~~~l~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~  126 (449)
                      .+.+|++.+....++.+.    |-....+.+....| .|.++.|.+...+.+..+.+++....-++-.|+...|.+....
T Consensus       230 ~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a  309 (422)
T COG0738         230 SSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYA  309 (422)
T ss_pred             HHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            344555555554444432    33344555555555 7888888877777777788888877777888999999998877


Q ss_pred             HHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHH
Q 013096          127 ILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFET  164 (449)
Q Consensus       127 ~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a  164 (449)
                      +.-.+-++ .+++++...++.. ++.|+..+..+|+..+
T Consensus       310 ~~~ill~~~~~l~~g~v~~~~l-~~ig~F~simfPTIfs  347 (422)
T COG0738         310 LIAILLLLAVALIGGVVALYAL-FLIGLFNSIMFPTIFS  347 (422)
T ss_pred             HHHHHHHHHHHHhcChHHHHHH-HHHHHHhHHHHHHHHH
Confidence            66555554 6677786655544 6888889998988644

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.36  E-value=0.013  Score=50.38  Aligned_cols=73  Identities=10%  Similarity=-0.043  Sum_probs=57.6

Q ss_pred             HHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHH
Q 013096           97 AGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGVWKSITAHPSVWVANICLSLASSIFSFNFETWVAIEH  170 (449)
Q Consensus        97 ~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~  170 (449)
                      +-+....+..++.+.+.+++|.|+.++++.+.|.+-.++-+-++.+.++.+-++.|+|.+..+.+... ++.++
T Consensus        45 i~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~-ylt~~  117 (156)
T PF05978_consen   45 ILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGT-YLTSY  117 (156)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhH-HHHHc
Confidence            33344455566778899999999999999999987655556688899999999999999999877543 55554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.27  E-value=0.0042  Score=64.62  Aligned_cols=112  Identities=16%  Similarity=0.047  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHH
Q 013096          295 LGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARL  374 (449)
Q Consensus       295 ~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~  374 (449)
                      ..+.-+.+.+|.++|+.+.|.++|   ++|||+.+..+..+..++-...++.+ +.....+.=++.+++.+....+...+
T Consensus       120 ~~~~~s~~~~G~~vG~~i~g~lsD---~~GRk~~~~~~~~~~~i~~~~~a~a~-~~~~~~~~Rfl~G~~~~~~~~~~~~~  195 (521)
T KOG0255|consen  120 VALGQSLFFLGVLVGSLIFGPLSD---RFGRKPVLLVSLLLFIIFGILTAFAP-NYWMFLIFRFLSGFFGSGPLTVGFGL  195 (521)
T ss_pred             HHHHHHHHHHHHHHHHhhheehHh---hcccHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHhhccchhHHhHhh
Confidence            344456677899999999999999   79998888777666555444444444 33444444455666666677778888


Q ss_pred             HhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHhh
Q 013096          375 RTMYVPNELRGGMISLSLAPANAAILLFLLLRGFYR  410 (449)
Q Consensus       375 ~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~~  410 (449)
                      ..|.++++.|+.+..+.......+....+..+.+..
T Consensus       196 ~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  196 VAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             heeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999988833333333333333333444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.15  E-value=0.011  Score=59.97  Aligned_cols=124  Identities=14%  Similarity=0.053  Sum_probs=75.0

Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHH
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSL  371 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~  371 (449)
                      +.-.|..-+..-.+-++--++..++.+   +.|..+++..++.....=++...+. ++.|..+..=.+-++..+..+.+.
T Consensus       405 ~~LfGv~~a~~~~gEI~~~ffs~klI~---kiGHv~v~~lgLa~~~~Rf~~~S~L-~n~W~vLPieilqgit~aliWaa~  480 (618)
T KOG3762|consen  405 KTLFGVVSALCHAGEILFYFFSFKLIE---KIGHVNVMYLGLACNVGRFLYYSYL-QNPWMVLPIEILQGITHALIWAAI  480 (618)
T ss_pred             ceeeeehhhhhccchHHHHHHHHHHHH---HhcccceeeehhhHHHHHHHHHHHh-cCchheeeHHHHHHHHHHHHHHHH
Confidence            344564444444455666677788888   6777676665554444333333333 344444444445577888899999


Q ss_pred             HHHHhccCCCcchhHHHHhhHHHHH-HHHHHHHHHhH-HhhhcchhHHHH
Q 013096          372 ARLRTMYVPNELRGGMISLSLAPAN-AAILLFLLLRG-FYRNIENAAMVA  419 (449)
Q Consensus       372 ~~~~~~~~p~~~rg~~~~~~~~~~~-~~~~~~~~~g~-~~~~~~~~~~~~  419 (449)
                      .++++...|++.|+++.++.+.... ++-..+.++|+ ..+.++..+.+-
T Consensus       481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~  530 (618)
T KOG3762|consen  481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR  530 (618)
T ss_pred             HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence            9999999999999999998776433 23222333343 345565444343

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.13  E-value=0.002  Score=62.11  Aligned_cols=91  Identities=15%  Similarity=0.030  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH--Hhcch--hHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCCh
Q 013096          103 LFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK--SITAH--PSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQ  177 (449)
Q Consensus       103 ~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~--~~~s~--~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~  177 (449)
                      .-+-++.|.+.||+|||+.+..+.+++++..+ ..  ..+|.  .+++.+|+....+....+     .|.+|.    +|.
T Consensus       395 fPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaY-----vYtPEV----yPT  465 (528)
T KOG0253|consen  395 FPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAY-----VYTPEV----YPT  465 (528)
T ss_pred             CCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEE-----EecCcc----cch
Confidence            34456899999999999999999888877654 22  22343  355667776554443222     122222    333


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHH
Q 013096          178 DILSDTFWLMTFFESAALIGGQVLA  202 (449)
Q Consensus       178 ~~l~~~~~~~~~~~~~~~i~a~~lg  202 (449)
                      ...+...+.-+..+-++++++|+++
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHH
Confidence            3333333333333445567778777

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.02  E-value=0.019  Score=53.30  Aligned_cols=119  Identities=13%  Similarity=0.073  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHH--hccc-
Q 013096          273 FSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSII--AYDY-  347 (449)
Q Consensus       273 ~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~~~-  347 (449)
                      +..|.| ..|.|.+.++ + +..+...+-.+..+|.-+| .+.|.+.|   +.+++..+.++.....++....  .... 
T Consensus        16 Gt~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d---~~gp~~~l~iG~~~~~~GY~~~~l~~~~~   90 (250)
T PF06813_consen   16 GTTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYD---RFGPWVVLLIGAVLGFVGYGLLWLAVSGR   90 (250)
T ss_pred             Ccccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHH---hcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            344554 4567877543 2 3334444444444555554 78899999   7887776666554443333322  2221 


Q ss_pred             ---chhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHH
Q 013096          348 ---QEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANA  397 (449)
Q Consensus       348 ---~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~  397 (449)
                         .+.+.+....++.+.+......+......+.+| ++||++.|+......+
T Consensus        91 i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GL  142 (250)
T PF06813_consen   91 IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGL  142 (250)
T ss_pred             cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHh
Confidence               122222222222222333333333333457888 5799999887655444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.97  E-value=0.0068  Score=61.30  Aligned_cols=147  Identities=13%  Similarity=0.027  Sum_probs=97.4

Q ss_pred             HHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHH
Q 013096           68 VMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWV  146 (449)
Q Consensus        68 ~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~  146 (449)
                      ++.++.-.+++--.+|.+-.+.-.|..-...+.+=.+.=++.+.+..++||-+++..++..+.+=.+ ....+|.|..+-
T Consensus       385 ~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLP  464 (618)
T KOG3762|consen  385 AGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLP  464 (618)
T ss_pred             HHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheee
Confidence            3344444555555577776666666555555555555556789999999999999998888877544 556799999999


Q ss_pred             HHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHH-hHHHHHHHHHHHHHHhcccccCCcchhHHHHH
Q 013096          147 ANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFF-ESAALIGGQVLANWLVGIDVKKGVVPSSTASV  222 (449)
Q Consensus       147 ~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~-~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~  222 (449)
                      ..++||+..+..+.+..+ +++...+++.+    +.+.+.+... -+++-=.|.++|+.+.+.+   +-|..|.+..
T Consensus       465 ieilqgit~aliWaa~~s-Y~s~vaPp~l~----at~Q~l~~g~f~GlG~g~GslIGG~~v~~f---g~~ttf~~~g  533 (618)
T KOG3762|consen  465 IEILQGITHALIWAAIIS-YASHVAPPGLR----ATAQGLLQGIFHGLGKGLGSLIGGFVVERF---GARTTFRIFG  533 (618)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhCCCcch----HHHHHHHHHHhcccCcchhhhhhhhhheee---hhHHHHHHHH
Confidence            999999999999877654 55544444432    2333333221 2233334667788777765   6677777643

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.85  E-value=0.016  Score=59.41  Aligned_cols=59  Identities=19%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             HHHHHHHHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh----hCchHHHHHHHHHHHHHH
Q 013096           75 VFGEYELVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDL----IGQKKVCLIFFILHLFVG  133 (449)
Q Consensus        75 ~~~~~l~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr----~GRr~~ll~~~~~~~~~~  133 (449)
                      .++|.+.++ .|.|..+.+.+-....+++.++.+.+|.++||    ..||-.......++.+..
T Consensus       294 ~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g  357 (495)
T KOG2533|consen  294 YWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG  357 (495)
T ss_pred             HHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            344555555 56888888887777888888999999999999    667666666666665543

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.68  E-value=0.35  Score=46.69  Aligned_cols=301  Identities=12%  Similarity=-0.030  Sum_probs=143.9

Q ss_pred             HhCCChHHHH-HHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH-HHHHhcchhHHHHHHHHHHhHHHHhhh
Q 013096           83 YYGVAKEQMM-LLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG-VWKSITAHPSVWVANICLSLASSIFSF  160 (449)
Q Consensus        83 ~~g~s~~~ig-~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~-l~~~~~s~~~l~~~R~l~Glg~~~~~~  160 (449)
                      +.++++.|+. -++-...-+.++.=.+.=.+.|-.--||+++.-.+.+...- +..+.++.+.+=+.-+.-|..++... 
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-  113 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-  113 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-
Confidence            5667776654 11111111122222244478899988998876444333322 34566888888888888887766532 


Q ss_pred             hhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCC
Q 013096          161 NFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP  240 (449)
Q Consensus       161 ~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~  240 (449)
                          .+-+.. -...++++..++-+.--.....+...|..++..+++.. .+++...=.++.....++.++.. ..|..+
T Consensus       114 ----AYysYI-Ys~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~-~~sy~~LN~ISL~~~~ia~~~A~-fLP~v~  186 (433)
T KOG3810|consen  114 ----AYYSYI-YSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLE-TLSYTTLNYISLAEVTIAVLLAL-FLPRVK  186 (433)
T ss_pred             ----hhhhee-eeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhc-ccchhhhchhhHHHHHHHHHHHh-hCCCCc
Confidence                121111 01123333333333322222223344556666665532 12222111233333333333222 233222


Q ss_pred             CC------Ccc-------h--hh--------------hhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC-
Q 013096          241 KM------AFD-------D--YR--------------TSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVADG-  290 (449)
Q Consensus       241 ~~------~~~-------~--~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-  290 (449)
                      +.      +++       +  .+              ...++...+||+++...+.+++...+.+ -+.++...+=.+- 
T Consensus       187 rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~-QV~nY~Q~LW~~~~  265 (433)
T KOG3810|consen  187 RSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYY-QVTNYTQILWKEVA  265 (433)
T ss_pred             hhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhH-HHHHHHHHHHHhhC
Confidence            10      000       0  00              1234455678888766665555443322 2233333332211 


Q ss_pred             ---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhh
Q 013096          291 ---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLI  367 (449)
Q Consensus       291 ---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~  367 (449)
                         ...--|..-+.......++.+..|.+--++.|.|. ..+..+.+.-+-+++++..+ +++++....+.++.....+.
T Consensus       266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~-~ll~~~s~~~agllf~m~~t-~~Iw~~Ya~yvlfr~~y~l~  343 (433)
T KOG3810|consen  266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD-LLLAVGSAVQAGLLFIMAQT-QHIWVCYAGYVLFRVIYQLT  343 (433)
T ss_pred             CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhH-HHHHHHHHHhhhhhhhhhcc-cceehhhhhHHHHHhhHhhh
Confidence               11223444444445556777778877653333322 22333333333333444444 35666667777776666666


Q ss_pred             hhHHHHHHhccCCCcchhHHHHhhHHH
Q 013096          368 LPSLARLRTMYVPNELRGGMISLSLAP  394 (449)
Q Consensus       368 ~p~~~~~~~~~~p~~~rg~~~~~~~~~  394 (449)
                      .+....-+++....|.-|-++|++...
T Consensus       344 itiA~~~iA~nL~~e~~gLvFGiNTFv  370 (433)
T KOG3810|consen  344 ITIATFQIARNLSSELFGLVFGINTFV  370 (433)
T ss_pred             hhHHHHHHHHhhhhhhheeeeehHHHH
Confidence            676666666666777778888876554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.54  E-value=0.058  Score=54.71  Aligned_cols=104  Identities=14%  Similarity=0.060  Sum_probs=61.9

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHH--HH-HHhcccc-hhHHHHHHHHHHHHHhhh
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFV--FS-IIAYDYQ-EIGILVALFCLFHACVGL  366 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~--l~-~~~~~~~-~~~~~~~~~~l~~~~~g~  366 (449)
                      +....|++.++..++.+++++.+++...|..+  .++.+..+.+++.++  +. .+.+.++ ..++++.+-++.|++.|.
T Consensus        69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~--~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n  146 (488)
T KOG2325|consen   69 TATFFGLVIAASSLGHAIFSLIFGIWSNKTGS--VKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN  146 (488)
T ss_pred             CcchhhHHHHHHHHHHHhcchhhcccccccCC--cccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc
Confidence            44558999999999999999999999985332  256666665544333  22 3334444 334444555555555443


Q ss_pred             hhhHHHHHHhccCCCcchhHHHHhhHHHHHH
Q 013096          367 ILPSLARLRTMYVPNELRGGMISLSLAPANA  397 (449)
Q Consensus       367 ~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~  397 (449)
                      . ...-++.++..-.++|-++++.......+
T Consensus       147 ~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vl  176 (488)
T KOG2325|consen  147 F-AVLRAYIADASTVEDRPRAFAATSGGFVL  176 (488)
T ss_pred             H-HHHHHHHHhccCccchHHHHHHhhhHHHH
Confidence            2 33445666654556677776655443333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.39  E-value=4.2e-05  Score=77.86  Aligned_cols=102  Identities=17%  Similarity=0.156  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHhhhhhhHHH
Q 013096          295 LGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY--QEIGILVALFCLFHACVGLILPSLA  372 (449)
Q Consensus       295 ~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g~~~p~~~  372 (449)
                      .+...+...++..+|+.+.+++.|   |+|||+.+..+..+..++..+..+.+  ++.......-++.|++.|...+...
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d---~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLAD---RYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            466677778899999999999999   89988877766544444433333333  1333344455567888888888888


Q ss_pred             HHHhccCCCcchhHHHHhhHHHHHHHH
Q 013096          373 RLRTMYVPNELRGGMISLSLAPANAAI  399 (449)
Q Consensus       373 ~~~~~~~p~~~rg~~~~~~~~~~~~~~  399 (449)
                      .+..|..|++.||...++.+.....+.
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~  151 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGI  151 (451)
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999999998888776655543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.31  E-value=0.0066  Score=60.21  Aligned_cols=56  Identities=20%  Similarity=0.198  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh----hCchHHHHHHHHH
Q 013096           73 WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDL----IGQKKVCLIFFIL  128 (449)
Q Consensus        73 ~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr----~GRr~~ll~~~~~  128 (449)
                      +..++++..++.|++....+.+...+-+.+.+.+|+.|..+||    |||||..+.....
T Consensus        51 elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   51 ELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            3456677778899998888877777888889999999999995    8999998876444

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.07  E-value=0.13  Score=54.79  Aligned_cols=106  Identities=14%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc--c-----hhHHHHHHHHHHHHHhhhhh
Q 013096          296 GLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY--Q-----EIGILVALFCLFHACVGLIL  368 (449)
Q Consensus       296 g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~--~-----~~~~~~~~~~l~~~~~g~~~  368 (449)
                      ..++..+....-+...+.+++.|+  ++|+.+.+..+.++..++..+.....  .     .....+.++.+...|.|..-
T Consensus        26 ~~i~~~f~~l~yl~pilGg~iAD~--~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiK  103 (654)
T TIGR00926        26 TVLFHTFTYLCYLTPLIGAIIADG--WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIK  103 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccc
Confidence            334444444444556677788885  67888877766555544444333211  0     11223455666678888888


Q ss_pred             hHHHHHHhccCCCcc---hhHHHHhhHHHHHHHHHHHH
Q 013096          369 PSLARLRTMYVPNEL---RGGMISLSLAPANAAILLFL  403 (449)
Q Consensus       369 p~~~~~~~~~~p~~~---rg~~~~~~~~~~~~~~~~~~  403 (449)
                      |+..+...+.+++++   |-+.++++....|++...+.
T Consensus       104 p~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~  141 (654)
T TIGR00926       104 PCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLIST  141 (654)
T ss_pred             cCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998887654   44556666667777654443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.07  E-value=4.7  Score=41.29  Aligned_cols=120  Identities=13%  Similarity=0.058  Sum_probs=69.1

Q ss_pred             ChHHHHHHHHHHHHhHHHH-HHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHh--cchhHH----HHHH----------
Q 013096           87 AKEQMMLLLCAGFSAALFV-GSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSI--TAHPSV----WVAN----------  148 (449)
Q Consensus        87 s~~~ig~l~~~~~~~~~l~-~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~--~s~~~l----~~~R----------  148 (449)
                      +.+++..+.+...++..+. .++.+.+++|++|++++-.....|....+ .++.  |+-..+    ..-.          
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4467888888888876665 78999999999999998876655544321 1111  110000    0000          


Q ss_pred             ----HHHHhHHHHhhhhhHHH---HHH-H---HHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 013096          149 ----ICLSLASSIFSFNFETW---VAI-E---HEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLV  206 (449)
Q Consensus       149 ----~l~Glg~~~~~~~~~a~---~v~-~---~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~  206 (449)
                          .+.--.....+...|-|   +++ -   ...+-.+.++..|.++....++.++.+++|.+..++.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11111111122222221   111 0   1223356667778899888888898999998888776

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=95.05  E-value=0.033  Score=55.48  Aligned_cols=94  Identities=18%  Similarity=0.303  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcc--cchh-HHHHHHH---HHHHHHhhhhh
Q 013096          295 LGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYD--YQEI-GILVALF---CLFHACVGLIL  368 (449)
Q Consensus       295 ~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~--~~~~-~~~~~~~---~l~~~~~g~~~  368 (449)
                      .+.+.++..++.+.|.++.|++.|   ++|++++.....+++-++-.+....  .++. ..+.+.+   .+.+++.|.-+
T Consensus        86 ~~~Vn~~A~vGti~GQl~FG~lgD---~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY  162 (538)
T KOG0252|consen   86 LALVNAAALVGTIFGQLFFGWLGD---KFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY  162 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh---hhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence            466677777899999999999999   8998887655444433333222221  1121 2222222   25577888889


Q ss_pred             hHHHHHHhccCCCcchhHHHHhh
Q 013096          369 PSLARLRTMYVPNELRGGMISLS  391 (449)
Q Consensus       369 p~~~~~~~~~~p~~~rg~~~~~~  391 (449)
                      |...+..+|....+.||+-.+..
T Consensus       163 PlSAtI~SE~an~~~RGa~iaav  185 (538)
T KOG0252|consen  163 PLSATIMSESANKKTRGAFIAAV  185 (538)
T ss_pred             cchHHHhhhhhhhccccceeEEE
Confidence            99999999999888999876654

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.06  E-value=0.38  Score=47.64  Aligned_cols=107  Identities=11%  Similarity=0.073  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHH-HH--h-cch------hHHHHHHHHHHhHHHHhhhhhHHHHHHHH-HhhcCChhhHHHHHHHHH
Q 013096          120 KVCLIFFILHLFVGVW-KS--I-TAH------PSVWVANICLSLASSIFSFNFETWVAIEH-EKQGQRQDILSDTFWLMT  188 (449)
Q Consensus       120 ~~ll~~~~~~~~~~l~-~~--~-~s~------~~l~~~R~l~Glg~~~~~~~~~a~~v~~~-~~r~~~~~~l~~~~~~~~  188 (449)
                      |+++.+.+++.++.++ .+  . ++.      +.++++-.+.++|.|..-|+..+ +..|- ++++  +++..+.+....
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~-~~~dq~~~~~--~~~~~~~F~~fY   78 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISP-FGADQYDEDD--DSRRDSFFNWFY   78 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHH-HHHHCSSTTT--TTHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHH-HHHHHhcccc--hhhhhhhHHHHH
Confidence            5667777777776542 21  1 233      68899999999999988888655 33332 2221  344566777666


Q ss_pred             HHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHH
Q 013096          189 FFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICV  232 (449)
Q Consensus       189 ~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i  232 (449)
                      ....++..++..+..++-+.+   ||...|.+..+..+++.+..
T Consensus        79 ~~in~G~~~~~~~~~~i~~~~---~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   79 WGINIGSLFSPTLVPYIQQNY---GWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHHHHCCCHHHHCS----HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHhhcccchhhcccc---chhhhhhHHHHHHHHHHHHH
Confidence            666777778887777776654   88888988776666655433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03612 spermidine synthase; Provisional

Probab=93.59  E-value=6.1  Score=41.16  Aligned_cols=102  Identities=15%  Similarity=0.189  Sum_probs=49.8

Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHH--H-HHHHHHHH-h-ccc-chh-HHHHHHHHHHHHHh
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFV--V-LGFVFSII-A-YDY-QEI-GILVALFCLFHACV  364 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~--~-~~~~l~~~-~-~~~-~~~-~~~~~~~~l~~~~~  364 (449)
                      ....+.+.+.++.++.+|+.+.+++.+   + ..++....-..  + .+++..+. . ... ... .......++.++..
T Consensus        49 ~~~~~~ii~~fl~glalGs~l~~~~~~---~-~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~  124 (521)
T PRK03612         49 VTQFSTVIGLMLFAMGVGALLSKYLLR---D-AAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI  124 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888899999998887753   2 12222111111  1 11111110 1 111 111 11122223446788


Q ss_pred             hhhhhHHHHHHhccCC---CcchhHHHHhhHHHHHH
Q 013096          365 GLILPSLARLRTMYVP---NELRGGMISLSLAPANA  397 (449)
Q Consensus       365 g~~~p~~~~~~~~~~p---~~~rg~~~~~~~~~~~~  397 (449)
                      |+..|....+..+...   .+.-|++++....+..+
T Consensus       125 G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~  160 (521)
T PRK03612        125 GMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALV  160 (521)
T ss_pred             HHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHH
Confidence            8899988777665432   22345556555444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=92.83  E-value=0.59  Score=46.72  Aligned_cols=80  Identities=13%  Similarity=0.028  Sum_probs=47.2

Q ss_pred             HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHH-HHHHHHHHHHHHH----HHHh-cchhHHHHHHHHHHhHHH
Q 013096           83 YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKV-CLIFFILHLFVGV----WKSI-TAHPSVWVANICLSLASS  156 (449)
Q Consensus        83 ~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~-ll~~~~~~~~~~l----~~~~-~s~~~l~~~R~l~Glg~~  156 (449)
                      ..|.+....|.......+++++++...|.++||...=|. .++......++.+    |..- ...+.++..-.+.|....
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~  374 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT  374 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence            445565667777777778889999999999999864333 3332222222212    2221 233455555566666665


Q ss_pred             Hhhhhh
Q 013096          157 IFSFNF  162 (449)
Q Consensus       157 ~~~~~~  162 (449)
                      ...|..
T Consensus       375 ~~~Pig  380 (480)
T KOG2563|consen  375 GYLPIG  380 (480)
T ss_pred             CCCCcc
Confidence            555553

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.80  E-value=0.97  Score=44.74  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcc---hhHHHHhhHHHHHHHHHHHHHHhHHh-hhcchhHHHHHHHHHHH
Q 013096          351 GILVALFCLFHACVGLILPSLARLRTMYVPNEL---RGGMISLSLAPANAAILLFLLLRGFY-RNIENAAMVAFAALGLF  426 (449)
Q Consensus       351 ~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~---rg~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~l  426 (449)
                      ..+.+++.+..+|.|..=|+..++..|.++++.   |-+.++++....|++...+...-.+. ++.++...+.++.++.+
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~  113 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML  113 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence            345667777889999999999999999998763   45567778888888766555433333 45667776666666666


Q ss_pred             HHHHHHH
Q 013096          427 IAAGCMH  433 (449)
Q Consensus       427 ~~~~~~~  433 (449)
                      ++.....
T Consensus       114 ~~~~~f~  120 (372)
T PF00854_consen  114 LALIVFL  120 (372)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=92.48  E-value=16  Score=38.47  Aligned_cols=152  Identities=11%  Similarity=0.011  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHHHHHHHHHHHHH-HHH---hc---------
Q 013096           74 SVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCLIFFILHLFVGV-WKS---IT---------  139 (449)
Q Consensus        74 ~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll~~~~~~~~~~l-~~~---~~---------  139 (449)
                      .+.+..+..+++.+..++.-.............+.++.++|-| ||=+++.++.+++.++.. ...   .+         
T Consensus        58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~  137 (571)
T KOG1237|consen   58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF  137 (571)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence            4455455678888776666566666556666667899999998 899999988877765421 111   11         


Q ss_pred             ----------c---hhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhc-CChhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 013096          140 ----------A---HPSVWVANICLSLASSIFSFNFETWVAIEHEKQG-QRQDILSDTFWLMTFFESAALIGGQVLANWL  205 (449)
Q Consensus       140 ----------s---~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~-~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l  205 (449)
                                +   ...++.+.-+..+|.|..-++..++=.++....+ ........-+....+....+..++..+--+.
T Consensus       138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyi  217 (571)
T KOG1237|consen  138 KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYI  217 (571)
T ss_pred             CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence                      1   1356666667777877766664432222222111 1111222344444444455555555544444


Q ss_pred             hcccccCCcchhHHHHHHHHHHH
Q 013096          206 VGIDVKKGVVPSSTASVFLSILG  228 (449)
Q Consensus       206 ~~~~~~~g~~~~f~~~~~~~~~~  228 (449)
                      -+.   .+|..-|.+..+..+++
T Consensus       218 q~~---~~w~lgf~i~~~~~~la  237 (571)
T KOG1237|consen  218 QDN---VGWKLGFGIPTVLNALA  237 (571)
T ss_pred             hhc---ccceeeccHHHHHHHHH
Confidence            333   37777777655544444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=92.27  E-value=2.5  Score=36.23  Aligned_cols=87  Identities=13%  Similarity=0.111  Sum_probs=56.1

Q ss_pred             HHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchh
Q 013096          306 RMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRG  385 (449)
Q Consensus       306 ~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg  385 (449)
                      ..+.+++.+.+.+   +++.|+.+.++.+...+-  ...+...+.+.++..-.+.+++.+..+.+...++.+..+++.|+
T Consensus        50 ~~~s~l~~P~iv~---~lg~K~sm~lg~~~y~~y--~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~  124 (156)
T PF05978_consen   50 FAISCLFAPSIVN---KLGPKWSMILGSLGYAIY--IASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIG  124 (156)
T ss_pred             HHHHHHhHHHHHH---HHhhHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHh
Confidence            3455556666666   677777766654443322  22222223344555666778889999999999999998888898


Q ss_pred             HHHHhhHHHHHH
Q 013096          386 GMISLSLAPANA  397 (449)
Q Consensus       386 ~~~~~~~~~~~~  397 (449)
                      +-.++.-...+.
T Consensus       125 ~~~~ifw~i~~~  136 (156)
T PF05978_consen  125 RNTGIFWAIFQS  136 (156)
T ss_pred             hHHHHHHHHHHH
Confidence            877765544443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK03612 spermidine synthase; Provisional

Probab=92.20  E-value=17  Score=37.96  Aligned_cols=37  Identities=8%  Similarity=-0.109  Sum_probs=27.2

Q ss_pred             HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCch
Q 013096           83 YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQK  119 (449)
Q Consensus        83 ~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr  119 (449)
                      -+|-+..+.+.+.+++.++..+++...|.++++--|+
T Consensus        44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~   80 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG   80 (521)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            5677777788888888888888888777776443333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=91.97  E-value=0.76  Score=34.89  Aligned_cols=63  Identities=16%  Similarity=0.152  Sum_probs=43.9

Q ss_pred             hhhhhccCC--CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhccc
Q 013096          282 WAPTLVADG--REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDY  347 (449)
Q Consensus       282 ~~p~~~~~~--~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  347 (449)
                      ..|.+.+++  +..+.|++-+.+.++..+|.....++.+   +.+.++.+..+.+...+.+.......
T Consensus        14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPR---HSRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467777664  4566888889999999999999998876   44556666666555555544444443

Note that many members are hypothetical proteins.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=91.81  E-value=4  Score=37.60  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=59.6

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHhhhhhhHHH
Q 013096          294 HLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQ-EIGILVALFCLFHACVGLILPSLA  372 (449)
Q Consensus       294 ~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~~p~~~  372 (449)
                      ..+...........++..+.+++.|   |.++++....+............+... ............+++.|...|...
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  116 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGD---RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVAS  116 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccc---cccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4567777777788888889999999   556555554443221222122222222 222233333335667777888888


Q ss_pred             HHHhccCCC-cchhHHHHhhHH
Q 013096          373 RLRTMYVPN-ELRGGMISLSLA  393 (449)
Q Consensus       373 ~~~~~~~p~-~~rg~~~~~~~~  393 (449)
                      ++..+..|+ +.|+...+....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~  138 (338)
T COG0477         117 ALLSEWFPEATERGLAVGLVTL  138 (338)
T ss_pred             HHHHHhcCchhHHHHHHHHHHH
Confidence            999999987 667887776655

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.37  E-value=5.5  Score=40.43  Aligned_cols=129  Identities=16%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             hhhHHHHHhcCCCCCCch-h-HHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHhhhhhhHHHHHHhcc---CC
Q 013096          309 GSTVFPWLISGPSSFRTE-D-CLLYAFVVLGFVFSIIAYDY---QEIGILVALFCLFHACVGLILPSLARLRTMY---VP  380 (449)
Q Consensus       309 g~~l~~~l~~~~~~~~~~-~-~l~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~---~p  380 (449)
                      -..+.|.++|...-+|.| | .+.++..+.++........+   .+.......+++..++..+..-...++..|.   .|
T Consensus        40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p  119 (433)
T PF03092_consen   40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREP  119 (433)
T ss_pred             HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Confidence            345777788843223333 3 33334333322222222211   1222233333444555555444444444444   34


Q ss_pred             CcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHH-HHHHHHHHHHHHHHHHHHHh
Q 013096          381 NELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMV-AFAALGLFIAAGCMHVLKRW  438 (449)
Q Consensus       381 ~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~  438 (449)
                      .+ ||...+........+.+.+... |.+.++.+....+ +......+.......+.+|+
T Consensus       120 ~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~  178 (433)
T PF03092_consen  120 ES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER  178 (433)
T ss_pred             ch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence            44 7777776665555554334333 4444444432222 23333344333344455543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=89.60  E-value=3.5  Score=42.15  Aligned_cols=109  Identities=12%  Similarity=0.042  Sum_probs=60.5

Q ss_pred             HHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCc
Q 013096          303 LGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSLARLRTMYVPNE  382 (449)
Q Consensus       303 ~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~  382 (449)
                      ++..++.+.+.|.++|   +.+++..+.......-+......+.  . ++.+. ..-...+.+..+....++.++...+|
T Consensus        72 ~~~~~i~s~~iG~lSD---~~grk~~L~~~~~~~~l~~~~~~~~--~-~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSD---RYGRKVVLLLPLFGTILPALCLLFQ--G-YWFFL-LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             HHHHHHHHhhhHHhhh---hhhhhhhHHHHHHHHHHhHHHHHHH--H-HHHhh-hcccccchhhhhhhhhhheeeccchh
Confidence            3456677888899999   6777665554332221111111111  1 11111 11112233445667778889999999


Q ss_pred             chhHHHHhhHHHHHHHHHHHHHHhHHh-hhcchhHHH
Q 013096          383 LRGGMISLSLAPANAAILLFLLLRGFY-RNIENAAMV  418 (449)
Q Consensus       383 ~rg~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~  418 (449)
                      .|...+|+.......+...++..+++. ...+....+
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f  181 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVF  181 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHH
Confidence            999999987776666655555555444 333443333

>PF12832 MFS_1_like: MFS_1 like family

Probab=88.12  E-value=3  Score=31.00  Aligned_cols=46  Identities=17%  Similarity=0.369  Sum_probs=34.1

Q ss_pred             hhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHH
Q 013096          283 APTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLY  331 (449)
Q Consensus       283 ~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~  331 (449)
                      .|.+.++ | ++.+.|.+.+.......++..+.+++.|   |.+++|....
T Consensus        23 l~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laD---k~~~~~~~l~   70 (77)
T PF12832_consen   23 LPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLAD---KFGKRKVILL   70 (77)
T ss_pred             hhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCccHHHHH
Confidence            4555543 3 5567888888888888999999999999   6766665443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=87.97  E-value=28  Score=34.06  Aligned_cols=96  Identities=13%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             ccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhhHH
Q 013096          292 EVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILPSL  371 (449)
Q Consensus       292 ~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p~~  371 (449)
                      +.+.+.+|.+...+.++-+.+.|.+.|   |+|+||.-....++.++.-+.  -..++...++++=++.+++..+.+.+.
T Consensus        68 ~~qIa~Lf~~Gf~Ss~i~g~~~G~laD---~~Grk~~cl~~cily~~scl~--k~~~~~~~L~~GRvlgGiaTSLLfS~F  142 (354)
T PF05631_consen   68 EHQIAILFVAGFASSAIFGTFVGSLAD---RYGRKKACLLFCILYSLSCLT--KHSSNYPVLLLGRVLGGIATSLLFSAF  142 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            345677776666666666678888999   788777433322222222111  112233445555556666666666654


Q ss_pred             HHHH-h----ccCCCcchhHHHHhhH
Q 013096          372 ARLR-T----MYVPNELRGGMISLSL  392 (449)
Q Consensus       372 ~~~~-~----~~~p~~~rg~~~~~~~  392 (449)
                      -+.. .    +-+|+|..+..++...
T Consensus       143 EsW~V~Eh~~~g~~~~~L~~tF~~~t  168 (354)
T PF05631_consen  143 ESWMVHEHNKRGFPQEWLSDTFSLAT  168 (354)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            4443 2    2345555555554433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=84.40  E-value=54  Score=33.88  Aligned_cols=121  Identities=15%  Similarity=0.112  Sum_probs=66.0

Q ss_pred             ChHHHHHHHHHHHHh-HHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH-HHH---------HhcchhHH----HHHHHHH
Q 013096           87 AKEQMMLLLCAGFSA-ALFVGSFLGMISDLIGQKKVCLIFFILHLFVG-VWK---------SITAHPSV----WVANICL  151 (449)
Q Consensus        87 s~~~ig~l~~~~~~~-~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~-l~~---------~~~s~~~l----~~~R~l~  151 (449)
                      +++.+..+-....++ ..++......++||++|+++.-.....+.... +.+         +.++....    ...+.+.
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            455566555545553 34556679999999999999876655544321 111         11222111    0111122


Q ss_pred             Hh-------HHHHhhhhhHHH---HHHHH----HhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Q 013096          152 SL-------ASSIFSFNFETW---VAIEH----EKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVG  207 (449)
Q Consensus       152 Gl-------g~~~~~~~~~a~---~v~~~----~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~  207 (449)
                      |.       ..+..+..+|-|   +++..    ..+-.+.++..+.++....++.++.++++.+..++.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21       122333333433   12211    2233566677788888888888888888877777665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=81.07  E-value=61  Score=32.16  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhHHHHHHHH-Hh-CCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHH
Q 013096           54 PFQRNFLLLFSLASVMEGLWSVFGEYELV-YY-GVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFIL  128 (449)
Q Consensus        54 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~-g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~  128 (449)
                      +.....+..|+++..+|-++.--+ .++- ++ |=|...++.--.+-....++.+++.|-..|+..|+|++...+.+
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~V-sL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~l  102 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSV-SLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLL  102 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHH-HHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhh
Confidence            334445566888888887665332 3332 22 21222222222222345677788999999999999999877655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	449
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.95
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.92
2xut_A	524	Proton/peptide symporter family protein; transport	99.9
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.32
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.17
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.98
2xut_A	524	Proton/peptide symporter family protein; transport	98.85
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.67
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.67

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=6.7e-31  Score=264.90  Aligned_cols=356  Identities=9%  Similarity=-0.014  Sum_probs=249.8

Q ss_pred             hhhHHHHHHHHHHHHHhh----hhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHH
Q 013096           54 PFQRNFLLLFSLASVMEG----LWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILH  129 (449)
Q Consensus        54 ~~~~~~~~~~~l~~~~~~----~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~  129 (449)
                      +.+++.+....+..+.++    ...++.+.+.+++ .|+.+++++.++..++..+++++.|+++||+|||++++++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            333444444444444333    3467777777789 99999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHH----hcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 013096          130 LFVGV-WKS----ITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANW  204 (449)
Q Consensus       130 ~~~~l-~~~----~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~  204 (449)
                      +++++ +++    ++|++.+++.|+++|++.+...++..+ ++.|    -.++++.++.++.......++.+++|.++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~-~i~~----~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  177 (451)
T 1pw4_A          103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVH----WWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  177 (451)
T ss_dssp             HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHT----TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHH-HHHH----HCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88876 778    899999999999999999988777655 3333    2455667788888877888888899999988


Q ss_pred             HhcccccCC-cchhHHHHHHHHHHHHHHHHhccccCCCCC------c-chh-----------h---hh-hhHhhhcChhH
Q 013096          205 LVGIDVKKG-VVPSSTASVFLSILGIICVSRGWTENPKMA------F-DDY-----------R---TS-FFTYIFGDKRI  261 (449)
Q Consensus       205 l~~~~~~~g-~~~~f~~~~~~~~~~~~~i~~~~~e~~~~~------~-~~~-----------~---~~-~~~~l~~~~~~  261 (449)
                      +.+..   + ||++|++.+++.++..++..+..||+++++      + ++.           +   ++ ..++++++|++
T Consensus       178 l~~~~---g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (451)
T 1pw4_A          178 GMAWF---NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLL  254 (451)
T ss_dssp             HHHHT---CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHH
T ss_pred             HHHHh---ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHH
Confidence            77654   7 999999877665554444444456654321      0 000           0   01 14677888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCC--CchhHHHHHHHHH
Q 013096          262 WLLVLAQACLQFSIALFWILWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSF--RTEDCLLYAFVVL  336 (449)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~--~~~~~l~~~~~~~  336 (449)
                      +...+...+.....+. ...|.|.+.++.   ++...+.+.....++.++|..+.+++.|   |+  ++++.+..+..+.
T Consensus       255 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~---~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD---KVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCchhHHHHHHHH
Confidence            8776655555444333 345788887652   3445677888888889999999999999   66  6676665544333


Q ss_pred             H-HHHHHHhcccc-hhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHH-HHHHHHHH-hHHhhhc
Q 013096          337 G-FVFSIIAYDYQ-EIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANA-AILLFLLL-RGFYRNI  412 (449)
Q Consensus       337 ~-~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~-~~~~~~~~-g~~~~~~  412 (449)
                      . +++.......+ +.+......++.+++.+...+...++.+|.+|++.||+++|+.+...++ +...++.. |.+.+..
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  410 (451)
T 1pw4_A          331 VTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  410 (451)
T ss_dssp             HHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3 44443333322 3333444555667777777788888999999999999999999888887 75555544 4555666


Q ss_pred             chhHHHHHHH
Q 013096          413 ENAAMVAFAA  422 (449)
Q Consensus       413 ~~~~~~~~~~  422 (449)
                      +....+.+..
T Consensus       411 g~~~~~~~~~  420 (451)
T 1pw4_A          411 GWDGGFMVMI  420 (451)
T ss_dssp             CSHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            6554444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=8.8e-29  Score=248.59  Aligned_cols=338  Identities=12%  Similarity=0.019  Sum_probs=237.2

Q ss_pred             HHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-H---HHhcchhH
Q 013096           68 VMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-W---KSITAHPS  143 (449)
Q Consensus        68 ~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~---~~~~s~~~  143 (449)
                      .......|+.|.+.+++|.|+.|++++.+...++..+++++.|+++||+|||++++.+.++++++++ +   ..++|++.
T Consensus        40 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~  119 (438)
T 3o7q_A           40 VANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTL  119 (438)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            3345667888888889999999999999999999999999999999999999999999999988775 6   67899999


Q ss_pred             HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHh-cccccCC---------
Q 013096          144 VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLV-GIDVKKG---------  213 (449)
Q Consensus       144 l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~-~~~~~~g---------  213 (449)
                      +++.|+++|++.+...+...+ ++.|.    .++++.++.++.......++.+++|.+++++. +..  ..         
T Consensus       120 l~~~~~l~G~~~~~~~~~~~~-~~~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~  192 (438)
T 3o7q_A          120 FLVGLFIIAAGLGCLETAANP-FVTVL----GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKM  192 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHS----SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHS
T ss_pred             HHHHHHHHHhhHHHhhhhHHH-HHHHH----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccccccccC
Confidence            999999999999988877654 44443    34555667777777778888889999999887 432  22         


Q ss_pred             ---------------cchhHHHHHHHHHHHHH-HHHhccccCCCCC-c---chhhhhhhHhhhcChhHHHHHHHHHHHHH
Q 013096          214 ---------------VVPSSTASVFLSILGII-CVSRGWTENPKMA-F---DDYRTSFFTYIFGDKRIWLLVLAQACLQF  273 (449)
Q Consensus       214 ---------------~~~~f~~~~~~~~~~~~-~i~~~~~e~~~~~-~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  273 (449)
                                     ||++|.+......+..+ ...+..||+++++ +   ++..++.+++++++|+++...+...+...
T Consensus       193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (438)
T 3o7q_A          193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG  272 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred             CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHHHHHHH
Confidence                           89999765444333322 2333445554331 1   12223567889999998877665554443


Q ss_pred             HHHHHHHHhhhhh-ccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccch
Q 013096          274 SIALFWILWAPTL-VAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQE  349 (449)
Q Consensus       274 ~~~~~~~~~~p~~-~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~  349 (449)
                      ..+ ....|.|.+ .++  + +....+.......++.++|..+.+++.|   |+++++.+..+..+.++.+....+.++.
T Consensus       273 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~---r~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T 3o7q_A          273 AQT-ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS---RFAPHKVLAAYALIAMALCLISAFAGGH  348 (438)
T ss_dssp             HHH-HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHH-HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHcCCc
Confidence            333 334577877 654  2 3455777777888888999999999999   7888887776665555554444443322


Q ss_pred             hHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHH-HHhHHhhhcc-hhHHHHH
Q 013096          350 IGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFL-LLRGFYRNIE-NAAMVAF  420 (449)
Q Consensus       350 ~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~-~~g~~~~~~~-~~~~~~~  420 (449)
                       . .+..+++.+++.+...|...++..|..|++ |+++.++.. ...++...++ +.|.+.+..+ ....+.+
T Consensus       349 -~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  417 (438)
T 3o7q_A          349 -V-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI  417 (438)
T ss_dssp             -H-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred             -H-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence             2 233445667778888899999988999966 777777655 2334333333 3355555555 4444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=2.7e-28  Score=240.43  Aligned_cols=346  Identities=13%  Similarity=0.091  Sum_probs=237.3

Q ss_pred             HHHHHHhhhhhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchh
Q 013096           64 SLASVMEGLWSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHP  142 (449)
Q Consensus        64 ~l~~~~~~~~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~  142 (449)
                      ++.........|..+.+.+++|.|+++++++.+...++..+++++.|+++||+||||+++.+..+..++++ +..++|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~   89 (375)
T 2gfp_A           10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT   89 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH
Confidence            34445555677888887789999999999999999999999999999999999999999999999888776 77889999


Q ss_pred             HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHH
Q 013096          143 SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASV  222 (449)
Q Consensus       143 ~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~  222 (449)
                      .+++.|+++|++.+...+...+ ++.|..+++.+    ++.++.......++.+++|.+++++.+..   +||+.|.+..
T Consensus        90 ~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~  161 (375)
T 2gfp_A           90 VLIAASAMQGMGTGVGGVMART-LPRDLYERTQL----RHANSLLNMGILVSPLLAPLIGGLLDTMW---NWRACYLFLL  161 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSC----CSHHHHHHHHHHHHHHHHHHHHHHSSCHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhHHH-HHHHHCCHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHhc---cHHHHHHHHH
Confidence            9999999999999988877665 44555433322    33455555666677788999999888755   8999998776


Q ss_pred             HHHHHHHHHHHhccccCCCCCc-chhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHH
Q 013096          223 FLSILGIICVSRGWTENPKMAF-DDYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLI  298 (449)
Q Consensus       223 ~~~~~~~~~i~~~~~e~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i  298 (449)
                      ...++..+...+..||++++++ ++..+++++++++||+++...+...+.....+.+ ..+.|.+.++  + ++...|.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~  240 (375)
T 2gfp_A          162 VLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF-EACSGVLMGAVLGLSSMTVSIL  240 (375)
T ss_dssp             HHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHH
Confidence            6655554434445677655422 2233345778888888887666555544443333 4567877654  2 34456778


Q ss_pred             HHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHH-H--HHHHHHHhc-ccchhHHHHHHHHHHHHHhhhhhhHHHHH
Q 013096          299 FPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVV-L--GFVFSIIAY-DYQEIGILVALFCLFHACVGLILPSLARL  374 (449)
Q Consensus       299 ~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~-~--~~~l~~~~~-~~~~~~~~~~~~~l~~~~~g~~~p~~~~~  374 (449)
                      .....++.+++..+.+++.|   |.++ + +..+... .  ++.+..... ..++.+......++.+++.+...|...++
T Consensus       241 ~~~~~~~~~~~~~~~~~l~~---r~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  315 (375)
T 2gfp_A          241 FILPIPAAFFGAWFAGRPNK---RFST-L-MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSG  315 (375)
T ss_dssp             HHTHHHHHHHHHHHHHTTTT---HHHH-H-HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHH-H-HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            88888888899999999888   4443 2 2222211 1  111111111 11133334445566678888888999999


Q ss_pred             HhccCCCcchhHHHHhhHHHHHHHHHHHHHH-hHHhhhcchhHHHHHHHHH
Q 013096          375 RTMYVPNELRGGMISLSLAPANAAILLFLLL-RGFYRNIENAAMVAFAALG  424 (449)
Q Consensus       375 ~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~  424 (449)
                      .+|..| |+||++.|+.+...+++...++.. |.+.+..+....+.+.++.
T Consensus       316 ~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~  365 (375)
T 2gfp_A          316 AMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMG  365 (375)
T ss_dssp             HHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            999998 889999999888777665434333 3333444444444443333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.95  E-value=3.8e-25  Score=225.75  Aligned_cols=321  Identities=12%  Similarity=0.101  Sum_probs=202.4

Q ss_pred             hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhh-hCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhh
Q 013096           84 YGVAKEQMMLLLCAGFSAALFVGSFLGMISDL-IGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFN  161 (449)
Q Consensus        84 ~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr-~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~  161 (449)
                      +|.|+.+.+++.+...++..+++++.|+++|| +|||++++.+.+++.++++ +.+++|++.+++.|+++|++.+...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            89999999999999999999999999999999 8999999999999988876 788899999999999999999988877


Q ss_pred             hHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHh---cc-c
Q 013096          162 FETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSR---GW-T  237 (449)
Q Consensus       162 ~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~---~~-~  237 (449)
                      ..+ ++.|..+++.  +..+..++.......++.+++|.+++++.+..   |||++|++.....+++.+....   .. +
T Consensus       129 ~~~-~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          129 VST-LVGTLYDEHD--RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             HHH-HHHHHSSSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHH-HHHHHcCccc--ccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            655 4555432221  12455666666667778888999999988755   8999999865554444333221   11 1


Q ss_pred             cCCCC-Cc---chhhhhhhHh--------------------------------------------hhc-------Ch---
Q 013096          238 ENPKM-AF---DDYRTSFFTY--------------------------------------------IFG-------DK---  259 (449)
Q Consensus       238 e~~~~-~~---~~~~~~~~~~--------------------------------------------l~~-------~~---  259 (449)
                      +...+ ++   ++..++..+.                                            ..+       ++   
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (491)
T 4aps_A          203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV  282 (491)
T ss_dssp             SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred             ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            11111 10   1110110000                                            000       11   


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHH-----H
Q 013096          260 -RIWLLVLAQACLQFSIALFWILWAPTLVAD--G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCL-----L  330 (449)
Q Consensus       260 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l-----~  330 (449)
                       +.+...+...+ ....+.....+.|.+..+  + +..+.+.......++.+++..+.+++.|   |+++|+..     .
T Consensus       283 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---r~~~r~~~~~~~~~  358 (491)
T 4aps_A          283 VSYIPLFIAAVL-FWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWT---AWKKNQPSSPTKFA  358 (491)
T ss_dssp             TTHHHHHHHHHH-HHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHH---HTTTC---CHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHH---HHhccCCCchHHHH
Confidence             11222211111 111121112234444432  2 2245666666677777888888899888   55544322     2


Q ss_pred             HHHHHHHHHHHHHhcc--------cchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHH
Q 013096          331 YAFVVLGFVFSIIAYD--------YQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF  402 (449)
Q Consensus       331 ~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~  402 (449)
                      .+..+.++++......        ..+.+.....+++.+++.+...|...++.+|..|++.||++.|+.+...+++...+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~  438 (491)
T 4aps_A          359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN  438 (491)
T ss_dssp             HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3433444333322221        11333445556667788888889999999999999999999999888877776555


Q ss_pred             HHHhHHhhhcch
Q 013096          403 LLLRGFYRNIEN  414 (449)
Q Consensus       403 ~~~g~~~~~~~~  414 (449)
                      +...++..+.+.
T Consensus       439 ~~~~~~~~~~~~  450 (491)
T 4aps_A          439 AQLVTLYNAKSE  450 (491)
T ss_dssp             HHHGGGGGGSST
T ss_pred             HHHHHHHhcccH
Confidence            555555444443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=5.1e-25  Score=224.66  Aligned_cols=365  Identities=12%  Similarity=0.068  Sum_probs=210.1

Q ss_pred             hHHHHHHHHHhCC--------ChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH--------
Q 013096           74 SVFGEYELVYYGV--------AKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK--------  136 (449)
Q Consensus        74 ~~~~~~l~~~~g~--------s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~--------  136 (449)
                      ++.++.+.++++.        ++.+.+++.+..+++.+++++++|+++||+|||++++++.+++.++++ ++        
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~  111 (491)
T 4gc0_A           32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS  111 (491)
T ss_dssp             GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4445555555432        234567888888999999999999999999999999999999998876 66        


Q ss_pred             ----------HhcchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 013096          137 ----------SITAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLV  206 (449)
Q Consensus       137 ----------~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~  206 (449)
                                +++|+++++++|+++|+|.|...+.... ++.|..    |.++.++..+........+.+.++.++....
T Consensus       112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~-~i~E~~----p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPM-YIAELA----PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTS----CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhC----CHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence                      4789999999999999999988877643 566653    3444455555555454555555555555443


Q ss_pred             ccc-----ccCCcchhHHHHHHHHHHHHHHHHhccccCCCC-----Ccch---------------h----h--------h
Q 013096          207 GID-----VKKGVVPSSTASVFLSILGIICVSRGWTENPKM-----AFDD---------------Y----R--------T  249 (449)
Q Consensus       207 ~~~-----~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~-----~~~~---------------~----~--------~  249 (449)
                      ...     ..++||.++.......++..+ ..+..||+++.     +.++               .    .        +
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  265 (491)
T 4gc0_A          187 RSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRK  265 (491)
T ss_dssp             TTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhh
Confidence            321     023566666666555554433 34467887531     0000               0    0        0


Q ss_pred             h-hhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCch
Q 013096          250 S-FFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTE  326 (449)
Q Consensus       250 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~  326 (449)
                      . .....++.++.........+.+...+..+..+.|.+.++ + .............+...++..+..++.|   |+++|
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d---r~Grr  342 (491)
T 4gc0_A          266 TGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD---KFGRK  342 (491)
T ss_dssp             HTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCSH
T ss_pred             hhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH---hhcCc
Confidence            0 011122223333322222222222233344556666543 2 2222233333445667788889999999   78888


Q ss_pred             hHHHHHHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHhhh-hhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHH
Q 013096          327 DCLLYAFVVLGFVFSIIA---YDYQEIGILVALFCLFHACVGL-ILPSLARLRTMYVPNELRGGMISLSLAPANAAILLF  402 (449)
Q Consensus       327 ~~l~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~l~~~~~g~-~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~  402 (449)
                      +.+..+....++++....   .........+...+++..+.+. ..|....+.+|.+|++.|++++|+......++....
T Consensus       343 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~  422 (491)
T 4gc0_A          343 PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFV  422 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            877665555444443322   1111212222222222222222 346677888999999999999998776655543222


Q ss_pred             HHHhH-------Hhhhcch-hHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 013096          403 LLLRG-------FYRNIEN-AAMVAFAALGLFIAAGCMHVLKRWGKQPYQNWH  447 (449)
Q Consensus       403 ~~~g~-------~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  447 (449)
                      .....       .....+. ....++++++++.+...+.+++|+|.++.+|.+
T Consensus       423 ~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE  475 (491)
T ss_dssp             HTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence            21111       1111222 223345556666565566777887776655544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.92  E-value=5e-24  Score=213.44  Aligned_cols=336  Identities=13%  Similarity=0.057  Sum_probs=194.2

Q ss_pred             HhhhhhHHHHHHHH-HhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHH---H-HHHhcch-h
Q 013096           69 MEGLWSVFGEYELV-YYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVG---V-WKSITAH-P  142 (449)
Q Consensus        69 ~~~~~~~~~~~l~~-~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~---l-~~~~~s~-~  142 (449)
                      ......|+.+...+ ++|.|+.|+|.+.+...++..++++++|+++||+||||+++.+..++++..   . +...+.. .
T Consensus        22 ~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T 2cfq_A           22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445577665444 589999999999999999999999999999999999999998887765421   1 1222211 1


Q ss_pred             HHHHHHHHHHhHHHHhh----hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhH
Q 013096          143 SVWVANICLSLASSIFS----FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSS  218 (449)
Q Consensus       143 ~l~~~R~l~Glg~~~~~----~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f  218 (449)
                      .++..|++.|++.+...    +..+++ .+|.. |.     .+..++.......++..++|.+++++.+ .   +|+.+|
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~-~~-----~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~---~~~~~f  170 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAF-IEKVS-RR-----SNFEFGRARMFGCVGWALGASIVGIMFT-I---NNQFVF  170 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHH-HHHHH-HH-----HTCCHHHHSSSTTTHHHHHHHHHHHHHH-H---CSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHhh-hh-----cccchHHHHHHHHHHHHHHHHHHHHHHH-h---chhHHH
Confidence            23344555554443322    233332 22221 11     1112233333345566678888888765 2   788899


Q ss_pred             HHHHHHHHHHHHHHHhccccCCCC---Cc----c--hhhhhhhHhhhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 013096          219 TASVFLSILGIICVSRGWTENPKM---AF----D--DYRTSFFTYIFGDKRIWLLVLAQACLQFSIALFWILWAPTLVAD  289 (449)
Q Consensus       219 ~~~~~~~~~~~~~i~~~~~e~~~~---~~----~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  289 (449)
                      ++.+...++..+......||++++   ++    +  +...+.++++++||+++...+........ +.....|.|.++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  249 (417)
T 2cfq_A          171 WLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-YDVFDQQFANFFTS  249 (417)
T ss_dssp             TTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            876554433333232233343211   00    0  01113456788999887655443332222 22223456766543


Q ss_pred             C------CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 013096          290 G------REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHAC  363 (449)
Q Consensus       290 ~------~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~  363 (449)
                      .      +....|.......++.+++..+.+++.|   |+++++.+..+..+.++.+......+ +.+..+...++.+++
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~  325 (417)
T 2cfq_A          250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN---RIGGKNALLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFE  325 (417)
T ss_dssp             TSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHTTCC-SHHHHHHHTTHHHHH
T ss_pred             HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Confidence            1      1223456666666677888999999999   78888877666555555444443333 222233333344455


Q ss_pred             hhhhhhHHHHHHhccCCCcchhHHHHhh-HHHHHHHHHHHHHH-hHHhhhcchhHHHHH
Q 013096          364 VGLILPSLARLRTMYVPNELRGGMISLS-LAPANAAILLFLLL-RGFYRNIENAAMVAF  420 (449)
Q Consensus       364 ~g~~~p~~~~~~~~~~p~~~rg~~~~~~-~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~  420 (449)
                      .+...+....+..|..|++.||++.+.. +...+++...++.. |.+.++.+....+.+
T Consensus       326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~  384 (417)
T 2cfq_A          326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHH
Confidence            5555666678889999999999998884 65555654444443 444555555444433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.90  E-value=7.5e-22  Score=203.06  Aligned_cols=154  Identities=9%  Similarity=0.003  Sum_probs=116.8

Q ss_pred             hhHHHHH-HHHHhC------CChHHHHHHHHHHHHhHHHHHHHHHhhhhhh-CchHHHHHHHHHHHHHHH-HHHhc-chh
Q 013096           73 WSVFGEY-ELVYYG------VAKEQMMLLLCAGFSAALFVGSFLGMISDLI-GQKKVCLIFFILHLFVGV-WKSIT-AHP  142 (449)
Q Consensus        73 ~~~~~~~-l~~~~g------~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~-GRr~~ll~~~~~~~~~~l-~~~~~-s~~  142 (449)
                      ..++.+. +.+++|      .|+.+.+++.+...++..+++++.|+++||+ |||++++.+.+++.++.+ +.+++ |++
T Consensus        31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (524)
T 2xut_A           31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ  110 (524)
T ss_dssp             HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            3444444 345788      9999999999999999999999999999999 999999999999888776 77788 999


Q ss_pred             HHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHH
Q 013096          143 SVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVPSSTASV  222 (449)
Q Consensus       143 ~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~  222 (449)
                      .+++.|+++|++.+...+...+ ++.|..+++.+ ......++.......++.+++|.+++++.+..   +|+++|.+..
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r-~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---g~~~~f~~~~  185 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNK-SLAQKAFDMFYFTINFGSFFASLSMPLLLKNF---GAAVAFGIPG  185 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTT-THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHH-HHHHHcCccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHH
Confidence            9999999999999988777655 44544322211 12234444455666677788899888887654   8999998876


Q ss_pred             HHHHHHHHH
Q 013096          223 FLSILGIIC  231 (449)
Q Consensus       223 ~~~~~~~~~  231 (449)
                      +..++..+.
T Consensus       186 ~~~~~~~~~  194 (524)
T 2xut_A          186 VLMFVATVF  194 (524)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            665554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.32  E-value=1.2e-10  Score=116.47  Aligned_cols=152  Identities=13%  Similarity=0.032  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhh--CchHHHHHHHHHHH-HHHH-HHHh--cchhHHH
Q 013096           73 WSVFGEYELVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLI--GQKKVCLIFFILHL-FVGV-WKSI--TAHPSVW  145 (449)
Q Consensus        73 ~~~~~~~l~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~--GRr~~ll~~~~~~~-~~~l-~~~~--~s~~~l~  145 (449)
                      ...+.+...++ +|.++.+.+.+.+...++..++.++.|+++||+  |||+.+..+..+.. ++.+ ....  ++.+.+.
T Consensus       271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T 1pw4_A          271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM  350 (451)
T ss_dssp             HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence            34455555555 899999999999988889999999999999999  99999888777665 4433 2333  3677788


Q ss_pred             HHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHH-HHHHHHHHHHHHhcccccCCcchhHHHHHHH
Q 013096          146 VANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESA-ALIGGQVLANWLVGIDVKKGVVPSSTASVFL  224 (449)
Q Consensus       146 ~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~-~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~  224 (449)
                      +.-++.|++.+...+...+ ++.|    ..+++..++.++.......+ +..++|.+.+++.+..   ||+..|.+..++
T Consensus       351 ~~~~~~g~~~~~~~~~~~~-~~~~----~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~  422 (451)
T 1pw4_A          351 ICMIVIGFLIYGPVMLIGL-HALE----LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGG  422 (451)
T ss_dssp             HHHHHHHHHHTHHHHHHHH-HHHH----TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchHHHHHH-HHHH----HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHH
Confidence            8888888887765554322 2222    34566678888887777777 8888999999888765   788888876665


Q ss_pred             HHHHHHHH
Q 013096          225 SILGIICV  232 (449)
Q Consensus       225 ~~~~~~~i  232 (449)
                      .+++.+..
T Consensus       423 ~~~~~~~~  430 (451)
T 1pw4_A          423 SILAVILL  430 (451)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.17  E-value=5.5e-09  Score=103.94  Aligned_cols=144  Identities=8%  Similarity=-0.088  Sum_probs=99.9

Q ss_pred             hHHHHHH-HHH-hCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHH
Q 013096           74 SVFGEYE-LVY-YGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANIC  150 (449)
Q Consensus        74 ~~~~~~l-~~~-~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l  150 (449)
                      ..+.+.. .++ +|.++.+.+...+...++..++.++.|+++||+|||+++..+.++..+..+ ....++.+.++.. ++
T Consensus       278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  356 (438)
T 3o7q_A          278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TL  356 (438)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HH
T ss_pred             HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HH
Confidence            3445555 444 599999999998888889999999999999999999999988887777665 5566666555444 78


Q ss_pred             HHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCC-cchhHHHHHHHHHHH
Q 013096          151 LSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKG-VVPSSTASVFLSILG  228 (449)
Q Consensus       151 ~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g-~~~~f~~~~~~~~~~  228 (449)
                      .|++.+...+...++. .    +..+++ .+...+... .+.++..++|.+.+++.+..   | ++..|.+.....++.
T Consensus       357 ~g~~~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          357 CSAFMSIQYPTIFSLG-I----KNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA---GNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHTTHHHHHHHHH-H----SSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH---TSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-H----hhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHH
Confidence            8888877666543321 1    223332 333333333 34466778888888888765   5 778888765554444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.00  E-value=2.6e-08  Score=100.80  Aligned_cols=137  Identities=14%  Similarity=0.169  Sum_probs=97.7

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhh
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSS-FRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILP  369 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~-~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p  369 (449)
                      +..+.|++.+.+.++..+++++.+++.|   | +++|+.+..+..+.+++.......+ +.+..+...++.+++.|...|
T Consensus        52 s~~~~~~~~~~~~~~~~~~~~~~g~l~d---r~~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~  127 (491)
T 4aps_A           52 TRATAASIMAIYASMVYLSGTIGGFVAD---RIIGARPAVFWGGVLIMLGHIVLALPF-GASALFGSIILIIIGTGFLKP  127 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSCHHHHHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhccc
Confidence            4456788888889999999999999999   8 8999888877766666555554543 344455556677888888999


Q ss_pred             HHHHHHhccCCCcc--hhHHHHhhHHHHHHHHHHHHHHh-HHhhhcchhHHHHHHHHHHHHHHHH
Q 013096          370 SLARLRTMYVPNEL--RGGMISLSLAPANAAILLFLLLR-GFYRNIENAAMVAFAALGLFIAAGC  431 (449)
Q Consensus       370 ~~~~~~~~~~p~~~--rg~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~~  431 (449)
                      ...++..|.+|+++  |+++++..+...+++...++..+ .+.+..+....+...++..+++...
T Consensus       128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  192 (491)
T 4aps_A          128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV  192 (491)
T ss_dssp             HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999988  67778877777777765555544 4445566655555444444433333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.98  E-value=1.7e-08  Score=100.27  Aligned_cols=145  Identities=12%  Similarity=-0.004  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHHH
Q 013096           88 KEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETWV  166 (449)
Q Consensus        88 ~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~~  166 (449)
                      ..+.+...+...+...++.++.|+++||+|||+++..+.++.++..+ ..+.++.+.+++..++.+++.+...+...+ +
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~  336 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y  336 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            34556666666677778888999999999999999888777766544 445677888888888888876554443322 3


Q ss_pred             HHHHHhhcCChhhHHHHHHHH-HHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCC
Q 013096          167 AIEHEKQGQRQDILSDTFWLM-TFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENP  240 (449)
Q Consensus       167 v~~~~~r~~~~~~l~~~~~~~-~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~  240 (449)
                      ++|.    +|.+..+..++.. +..+.++.+++|.+++++.+..   |+...|.+.++..+++.+......||++
T Consensus       337 ~~~~----~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          337 ITSQ----FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHH----SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS---HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHH----CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            4443    4555566666653 4455677778899899887654   6677787766665555544444455543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.85  E-value=1.1e-07  Score=97.12  Aligned_cols=129  Identities=12%  Similarity=0.058  Sum_probs=90.9

Q ss_pred             CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhhhh
Q 013096          291 REVHLGLIFPSLLGARMLGSTVFPWLISGPSSF-RTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHACVGLILP  369 (449)
Q Consensus       291 ~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~p  369 (449)
                      ++.+.|++.+.+.++..++.++.+++.|   |+ ++|+.+..+..+.+++.........+.+..+...++.+++.|...|
T Consensus        52 s~~~~g~~~~~~~~~~~~~~~~~G~l~d---r~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  128 (524)
T 2xut_A           52 RGAVAKDVFHSFVIGVYFFPLLGGWIAD---RFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKP  128 (524)
T ss_dssp             TTTTHHHHHHHHHHHHHHTHHHHHHHHT---TSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence            4456788888889999999999999999   78 8888877766655555544444331334445556677888888999


Q ss_pred             HHHHHHhccCCCcchhHHHHh---hHHHHHHHHHHHHHHh-HHhhhcchhHHHHHHH
Q 013096          370 SLARLRTMYVPNELRGGMISL---SLAPANAAILLFLLLR-GFYRNIENAAMVAFAA  422 (449)
Q Consensus       370 ~~~~~~~~~~p~~~rg~~~~~---~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~  422 (449)
                      ...++..|.+|+++|++..+.   .+...+++...++..+ .+.+..+....+.+.+
T Consensus       129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~  185 (524)
T 2xut_A          129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPG  185 (524)
T ss_dssp             HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHH
T ss_pred             hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            999999999999999876555   6666777655555544 3444455555444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.67  E-value=1.2e-07  Score=92.34  Aligned_cols=133  Identities=12%  Similarity=0.019  Sum_probs=94.5

Q ss_pred             hhhhccC-C-CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Q 013096          283 APTLVAD-G-REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLF  360 (449)
Q Consensus       283 ~p~~~~~-~-~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  360 (449)
                      .|.+.++ + ++.+.|++.+...++..++++..+++.|   |+++|+.+..+..+.++........+ +.+..+...++.
T Consensus        23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d---r~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~   98 (375)
T 2gfp_A           23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD---RVGRRPVILVGMSIFMLATLVAVTTS-SLTVLIAASAMQ   98 (375)
T ss_dssp             HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT---TSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCchhHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence            4555443 2 4566888888889999999999999999   78888877766555555444333332 334445555667


Q ss_pred             HHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHHHHHHHHHhHHh-hhcchhHHHH
Q 013096          361 HACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAAILLFLLLRGFY-RNIENAAMVA  419 (449)
Q Consensus       361 ~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~  419 (449)
                      +++.+...|...++..|..|+|+|+++++..+...+++...++..+++. +..+....+.
T Consensus        99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  158 (375)
T 2gfp_A           99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL  158 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence            8888888999999999999999999999999888887765565554443 4344444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.67  E-value=1.5e-06  Score=87.74  Aligned_cols=164  Identities=9%  Similarity=-0.141  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HH--H-hc-chhHHHHHHH
Q 013096           75 VFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WK--S-IT-AHPSVWVANI  149 (449)
Q Consensus        75 ~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~--~-~~-s~~~l~~~R~  149 (449)
                      .+.+.+.++.+.+..+.........+...++.++.+.+.||+|||+.++.+.....++.+ ..  . .+ +-+..++.-+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  377 (491)
T 4gc0_A          298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML  377 (491)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            344566677788777666555555567778888999999999999999888776665443 21  1 11 1112222222


Q ss_pred             HHHhHHHHhh-hhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhccc---ccCCcchhHHHHHHHH
Q 013096          150 CLSLASSIFS-FNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGID---VKKGVVPSSTASVFLS  225 (449)
Q Consensus       150 l~Glg~~~~~-~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~---~~~g~~~~f~~~~~~~  225 (449)
                      +...+.+... +.. ..+.+|.    +|.+..+...+.....+.++..+++.+...+.+..   ...++...|++.+.+.
T Consensus       378 ~~~~~~~~~~~~~~-~~~~~E~----fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~  452 (491)
T 4gc0_A          378 FYVAAFAMSWGPVC-WVLLSEI----FPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  452 (491)
T ss_dssp             HHHHHHHTTTTHHH-HHHHHHS----SCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHH-HHHHHHh----CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            2222221111 221 1234443    45555555666555444444444443333222110   0124445777666666


Q ss_pred             HHHHHHHHhccccCCCCC
Q 013096          226 ILGIICVSRGWTENPKMA  243 (449)
Q Consensus       226 ~~~~~~i~~~~~e~~~~~  243 (449)
                      +++.+++++..|||++++
T Consensus       453 ~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          453 VLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHHHHHHHHHCCCCTTCC
T ss_pred             HHHHHHHHheecCCCCCC
Confidence            666666667789998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	449
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.26
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.95

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.3e-29  Score=247.56  Aligned_cols=368  Identities=10%  Similarity=0.015  Sum_probs=236.0

Q ss_pred             CCcchhhhHHHHHHHHHHHHHhhh----hhHHHHHHHHHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHH
Q 013096           49 SSSFVPFQRNFLLLFSLASVMEGL----WSVFGEYELVYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLI  124 (449)
Q Consensus        49 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~l~~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~  124 (449)
                      ++..++.++..+...+++.+...+    .+...| ..+|+|+|++|+|++.+...++..+++++.|+++||+|||+++..
T Consensus        16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   94 (447)
T d1pw4a_          16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   94 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            344566666666555555555433    233333 346789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHh----cchhHHHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHH
Q 013096          125 FFILHLFVGV-WKSI----TAHPSVWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQ  199 (449)
Q Consensus       125 ~~~~~~~~~l-~~~~----~s~~~l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~  199 (449)
                      +.++.+++.+ ++.+    ++++.+++.|+++|++.+...++..+ ++.|    .+++++.++.++.......++.+++|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~i~~----~~~~~~r~~~~~~~~~~~~~g~~i~~  169 (447)
T d1pw4a_          95 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGR-TMVH----WWSQKERGGIVSVWNCAHNVGGGIPP  169 (447)
T ss_dssp             HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHH-HHHT----TCTTTHHHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHH-HHHH----HHHhhcccccccccccccchhhhhhh
Confidence            9988887664 4443    58899999999999999887776543 3332    35566677888887777777777888


Q ss_pred             HHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccCCCC------Cc-c----h-----------hhhhhhHhhhc
Q 013096          200 VLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTENPKM------AF-D----D-----------YRTSFFTYIFG  257 (449)
Q Consensus       200 ~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~~~~------~~-~----~-----------~~~~~~~~l~~  257 (449)
                      .+++.+....  .+||+.|++......+..++.....+|++++      ++ +    +           ..+...+.+++
T Consensus       170 ~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (447)
T d1pw4a_         170 LLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP  247 (447)
T ss_dssp             HHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS
T ss_pred             hhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHc
Confidence            8877766543  4788888876555444433333333433221      00 0    0           01123566778


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC---CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhH---HHH
Q 013096          258 DKRIWLLVLAQACLQFSIALFWILWAPTLVADG---REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDC---LLY  331 (449)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~---l~~  331 (449)
                      +|.++.......+.....+.+ ..|.|.+..+.   +....+.......++.++|..+.+++.|   |.++++.   ...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~  323 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGI-LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD---KVFRGNRGATGVF  323 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH-HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTSTTCHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcc-hhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhh---hccccccccccch
Confidence            888877666555544443333 45778877653   3344666777777888899999999999   4443321   112


Q ss_pred             HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHhhhhhhHHHHHHhccCCCcchhHHHHhhHHHHHHH-HHHHHH-HhHH
Q 013096          332 AFVVLGFVFSIIAYD-YQEIGILVALFCLFHACVGLILPSLARLRTMYVPNELRGGMISLSLAPANAA-ILLFLL-LRGF  408 (449)
Q Consensus       332 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~g~~~p~~~~~~~~~~p~~~rg~~~~~~~~~~~~~-~~~~~~-~g~~  408 (449)
                      ...+..++....... ..+.+.....+++.+++.+...+....+.+|.+|++.||++.|+.+...+++ .+.++. .|..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~  403 (447)
T d1pw4a_         324 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  403 (447)
T ss_dssp             HHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222222 2233344445555666666677788888899999999999999987766653 344443 3555


Q ss_pred             hhhcchhHHH-HHHHHHHHHH
Q 013096          409 YRNIENAAMV-AFAALGLFIA  428 (449)
Q Consensus       409 ~~~~~~~~~~-~~~~~~~l~~  428 (449)
                      .+..+....+ .+.++.++..
T Consensus       404 ~~~~g~~~~~~~~~~~~~~~~  424 (447)
T d1pw4a_         404 VDFFGWDGGFMVMIGGSILAV  424 (447)
T ss_dssp             HHSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHHHHHHHHHH
Confidence            5666644333 3333343333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=5.3e-24  Score=207.08  Aligned_cols=365  Identities=14%  Similarity=0.073  Sum_probs=204.4

Q ss_pred             HHHHHHHhhhhhHHHHHHH-HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcc
Q 013096           63 FSLASVMEGLWSVFGEYEL-VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITA  140 (449)
Q Consensus        63 ~~l~~~~~~~~~~~~~~l~-~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s  140 (449)
                      +++..+..++..|+.+... +++|+|++|+|++.++..++..+++++.|+++||+||||+++++.....++.. ....++
T Consensus        16 ~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~   95 (417)
T d1pv7a_          16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF   95 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhh
Confidence            4455555666778876544 57899999999999999999999999999999999999999998888776554 444444


Q ss_pred             hhH----HHHHHHHHHhHHHHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccCCcch
Q 013096          141 HPS----VWVANICLSLASSIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESAALIGGQVLANWLVGIDVKKGVVP  216 (449)
Q Consensus       141 ~~~----l~~~R~l~Glg~~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~~~i~a~~lg~~l~~~~~~~g~~~  216 (449)
                      ...    .++.+.+.+.+.+...............++..   +..+..+........+.++++.+++.+.+.    +|+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~  168 (417)
T d1pv7a_          96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR---RSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQF  168 (417)
T ss_dssp             HHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHH---HHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHH
T ss_pred             hhhHHHHHHHHHHHhhhcccccccchhhcccccccchhh---hhHHHHHHHhhhhccccccccccccccccc----cccc
Confidence            433    34445554444443333322222111111100   011112222233344456677777776653    4455


Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCCc-ch--------hhhhhhHhhhcChhHHHHHHHHHHHH---HHHHHHHHHhhh
Q 013096          217 SSTASVFLSILGIICVSRGWTENPKMAF-DD--------YRTSFFTYIFGDKRIWLLVLAQACLQ---FSIALFWILWAP  284 (449)
Q Consensus       217 ~f~~~~~~~~~~~~~i~~~~~e~~~~~~-~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p  284 (449)
                      .+........+.........+|++.+++ ++        .........++++..+..........   .........+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (417)
T d1pv7a_         169 VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT  248 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhcccccccc
Confidence            5555443333333334444455443211 11        01122333444444333222211111   111111111111


Q ss_pred             hhccCC--CccchHHHHHHHHHHHHHhhhHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 013096          285 TLVADG--REVHLGLIFPSLLGARMLGSTVFPWLISGPSSFRTEDCLLYAFVVLGFVFSIIAYDYQEIGILVALFCLFHA  362 (449)
Q Consensus       285 ~~~~~~--~~~~~g~i~~~~~~~~~lg~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  362 (449)
                      ....+.  +....+.......++..++..+.+++.|   |.++++.+..+..+.++........+ +.+..+...++.++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~  324 (417)
T d1pv7a_         249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN---RIGGKNALLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMF  324 (417)
T ss_dssp             TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhcccccccccccccchhhhhhhhc---ccccccchhhhHHHHHHhhhcccccc-ccchhhHHHHHHHH
Confidence            111110  1223455556666778889999999999   78888877776666665555544444 33444555567788


Q ss_pred             HhhhhhhHHHHHHhccCCCcchhHHHHhh-HHHHHHHHHHHH-HHhHHhhhcchhHHHH-HHHHHHHHHHHHHHHHHHh
Q 013096          363 CVGLILPSLARLRTMYVPNELRGGMISLS-LAPANAAILLFL-LLRGFYRNIENAAMVA-FAALGLFIAAGCMHVLKRW  438 (449)
Q Consensus       363 ~~g~~~p~~~~~~~~~~p~~~rg~~~~~~-~~~~~~~~~~~~-~~g~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  438 (449)
                      +.+...|...++.+|.+|++.||++.|+. +...+++...++ +.|.+.+..+....+. ++++.++........+|++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            88888999999999999999999999874 444455543343 3455667777654443 3334443343344444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.4e-10  Score=110.88  Aligned_cols=145  Identities=12%  Similarity=0.001  Sum_probs=106.3

Q ss_pred             ChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHhHHHHhhhhhHHH
Q 013096           87 AKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV-WKSITAHPSVWVANICLSLASSIFSFNFETW  165 (449)
Q Consensus        87 s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l-~~~~~s~~~l~~~R~l~Glg~~~~~~~~~a~  165 (449)
                      +..+.+.......++..++..+.|++.||+|||+++..+.++..+..+ ....++.+.+++.-++.|++.+...+...+ 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-  335 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-  335 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH-
Confidence            344555666777778888889999999999999999999888887765 677899999999999999999887766544 


Q ss_pred             HHHHHHhhcCChhhHHHHHHHH-HHHhHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhccccC
Q 013096          166 VAIEHEKQGQRQDILSDTFWLM-TFFESAALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGIICVSRGWTEN  239 (449)
Q Consensus       166 ~v~~~~~r~~~~~~l~~~~~~~-~~~~~~~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~~~i~~~~~e~  239 (449)
                      ++.|.    .|++..++.++.. +....++..++|.+++++.+..   |++..|.+...+.++..++..+..+++
T Consensus       336 ~~~~~----~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         336 YITSQ----FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHH----SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHH----CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            33333    4555667777753 4455677788899999988866   888888876555444444333344443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=4.7e-08  Score=94.57  Aligned_cols=140  Identities=11%  Similarity=-0.040  Sum_probs=93.5

Q ss_pred             HHhCCChHHHHHHHHHHHHhHHHHHHHHHhhhhhhCchHHHHHHHHHHHHHHH--HH----HhcchhHHHHHHHHHHhHH
Q 013096           82 VYYGVAKEQMMLLLCAGFSAALFVGSFLGMISDLIGQKKVCLIFFILHLFVGV--WK----SITAHPSVWVANICLSLAS  155 (449)
Q Consensus        82 ~~~g~s~~~ig~l~~~~~~~~~l~~~~~G~laDr~GRr~~ll~~~~~~~~~~l--~~----~~~s~~~l~~~R~l~Glg~  155 (449)
                      ++++.+..+.+.......+...++.++.|+++||++||+..........+...  ..    ..++.+...+.-++.|++.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  357 (447)
T d1pw4a_         278 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI  357 (447)
T ss_dssp             TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            35789999999888888888899999999999999998765544333322221  11    1346677777777888777


Q ss_pred             HHhhhhhHHHHHHHHHhhcCChhhHHHHHHHHHHHhHH-HHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHH
Q 013096          156 SIFSFNFETWVAIEHEKQGQRQDILSDTFWLMTFFESA-ALIGGQVLANWLVGIDVKKGVVPSSTASVFLSILGI  229 (449)
Q Consensus       156 ~~~~~~~~a~~v~~~~~r~~~~~~l~~~~~~~~~~~~~-~~i~a~~lg~~l~~~~~~~g~~~~f~~~~~~~~~~~  229 (449)
                      +...+.... +..|    ..+++..+...+.....+.+ +.+++|.+.+++.+.+   ||+..|.+.....+++.
T Consensus       358 ~~~~~~~~~-~~~~----~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~  424 (447)
T d1pw4a_         358 YGPVMLIGL-HALE----LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAV  424 (447)
T ss_dssp             THHHHHHHH-HHHH----TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHH----HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHH
Confidence            655444322 2232    24556677777766554444 5677888888888765   88888876555444443