Citrus Sinensis ID: 013111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mradikcdgasREENAAKLLKVAWLTLPLGIFITIGACFFVLWwqglsysnpyAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFgafktsdlfpfrlgnmmSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFlpfeessyatfarsasgqypqkskKIGNSLAEALKLVLLIGLVFmafgpsysYSLVRLLYgkkwsdgeastaLRYYCLYVVVLAMNGTSEAFLHAVATEDQlkrsndslLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKhyfqgsssfsfrsslpsgwpiLLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Flexible Loop (DISEMBL)
mradikcdgasrEENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFarsasgqypqkSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKiirfrnhkd
Low Complexity Region (SEG)
MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNllllrlrlVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASlflgywgyfllfgafKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGsssfsfrssLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Disordered region (IsUnstruct)
****************AKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA**************GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR****
Disordered Region (DISOPRED)
*******************LKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFA***************NSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR****
Disordered Region (DISEMBL)
MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF*************KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Disordered Region (DISPRO)
***DIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRN***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFRNHKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	449	2.2.26 [Sep-21-2011]
Q54IV7	540	Protein RFT1 homolog OS=D	yes	no	0.897	0.746	0.325	2e-52
Q0D2E8	539	Protein RFT1 homolog OS=X	yes	no	0.908	0.756	0.350	2e-49
Q96AA3	541	Protein RFT1 homolog OS=H	yes	no	0.910	0.756	0.313	3e-42
Q8C3B8	541	Protein RFT1 homolog OS=M	yes	no	0.948	0.787	0.311	6e-42
Q9Y123	556	Protein RFT1 homolog OS=D	yes	no	0.775	0.625	0.295	5e-36
P38206	574	Oligosaccharide transloca	yes	no	0.792	0.620	0.296	2e-34
Q6FPE8	551	Oligosaccharide transloca	yes	no	0.752	0.613	0.322	1e-33
O94302	527	Oligosaccharide transloca	yes	no	0.804	0.685	0.289	7e-29
Q754Q7	552	Oligosaccharide transloca	yes	no	0.737	0.599	0.298	2e-28
P40913	556	Oligosaccharide transloca	yes	no	0.824	0.665	0.270	5e-28

>sp|Q54IV7|RFT1_DICDI Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 156/479 (32%), Positives = 245/479 (51%), Gaps = 76/479 (15%)

Query: 2   RADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWW---QGLSYSNPYAQAIF 58
           R +I  D  + + N   ++ ++WL LP+GI ++I    F L+    + L   N Y   + 
Sbjct: 76  RVNIT-DKLNNDNNLKSVINLSWLVLPIGIGLSIIFENFFLYTSTKETLEILN-YHYGLR 133

Query: 59  INGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIV-F 117
           +   + +LELL+EP+YIL+QNLLL ++R  VE  A F + F+    IV    +  G++ F
Sbjct: 134 LFTISSILELLSEPMYILAQNLLLFKIRTTVEGFALFFKTFSTYYFIVI---LNMGLIGF 190

Query: 118 ALSQVAYAASLFLGYWGYFLLF--------------GAFKTSD-LFPFRLGNMMSYDKQL 162
             +Q+ Y+ +L +GY+GYFL+                 FK+ D LFP +    +  D+ L
Sbjct: 191 GYAQILYSLTLVIGYFGYFLINIINNNKNKDNKEFSNCFKSIDQLFP-KFSTRI--DRNL 247

Query: 163 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSY 222
             +  L+T+QS  KLLLQEGEK VL + +T   QA++ +V  LGSL+VR +FLP EE+ +
Sbjct: 248 IKLSLLYTWQSIYKLLLQEGEKFVLFFSETNQGQAIFAIVSNLGSLIVRFLFLPIEETCF 307

Query: 223 ATFAR-------------------------SASGQYPQKSKKIGNSLAEALKLVLLIGLV 257
             F +                           +       K   N L   +K ++L+ LV
Sbjct: 308 LMFPKLFPTINNNNNNNNNNNNNNNNNNKNQENNNNNDDFKNGANVLIVIMKFLILVSLV 367

Query: 258 FMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 317
           F  FGP +S+ L+ LLY  K+ D  A   L +YC+YV  LA+NG SE+F+H+VA EDQLK
Sbjct: 368 FTCFGPGFSHLLLNLLYNNKFRDTNAGVLLGFYCIYVGFLAINGVSESFVHSVAKEDQLK 427

Query: 318 RSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSF 377
             N  L++   IY++  +I  +   ++G+ILAN LN+ L                     
Sbjct: 428 TVNWVLIIIGFIYLLFTLIFCKLFQNIGIILANCLNIKL--------------------- 466

Query: 378 RSSLPSGWPIL--LVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRE 434
            + +P+   +L  ++S +IT  S +   +   F +T  IH  +G+ CF  +   IY +E
Sbjct: 467 SNMIPNKMVLLSFIISFIITNLSNKYIYNAVSFKST-CIHLLIGIICFIQTCTFIYLKE 524

May be involved in N-linked oligosaccharide assembly.
Dictyostelium discoideum (taxid: 44689)

>sp|Q0D2E8|RFT1_XENTR Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 238/454 (52%), Gaps = 46/454 (10%)

Query: 7   CDGASREENAAKLLKVAWLTLPLGIFITIGACF-FVL---WWQGLSYSNP-----YAQAI 57
           C   S +++    + + WL +PLGI      C+ F+L   W Q L    P     Y   +
Sbjct: 70  CLSHSAQQSWRHTIHLTWLAVPLGI------CWSFILGWIWLQILEVPEPEAIPYYNIGV 123

Query: 58  FINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIV--KQYEMEKGI 115
           +  GF+ V+ELLAEP ++L+Q  L ++L++V E++A   RC    IL++   Q+ +   +
Sbjct: 124 WAFGFSAVVELLAEPFWVLAQAHLFVKLKVVAESLAIIIRCSVTVILVLLCPQWGL---L 180

Query: 116 VFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY-----------DKQLAN 164
           +F+L+QV Y ++L L Y  YF  F     ++  PF L  M  +           D + A 
Sbjct: 181 IFSLAQVLYTSALALCYIAYFARFLGSLEAEKKPFPLRRMREFLPRFSSSQAFLDWKQAW 240

Query: 165 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSY 222
           +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R +FLP EES Y
Sbjct: 241 LAWSFFKQSFLKQILTEGERYVMTFLNVLSFGDQGVYDIVNNLGSLVARFIFLPIEESFY 300

Query: 223 ATFARS-ASGQYPQKSKKIGNSLAEA-----LKLVLLIGLVFMAFGPSYSYSLVRLLYGK 276
             FA+    G+  Q  +K   S+A       LKLV LIGLV +AFG +YS+  + +  G 
Sbjct: 301 VFFAKVLERGKKVQSQRKEEISMASEVLESLLKLVTLIGLVIIAFGYAYSHLALDIYGGS 360

Query: 277 KWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVI 336
             S G     LR YCLYV++LA+NG +E F  A   ++ + R N  +L  S+ ++ ++  
Sbjct: 361 MLSGGSGPVLLRCYCLYVLLLAINGVTECFTFASMGKEDVDRYNYVMLGLSLSFLCLSYY 420

Query: 337 LIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWP----ILLVSG 392
           +    GSVG ILAN  NM LRI +S ++I  Y++GS        LPS  P    +L VS 
Sbjct: 421 MTLWLGSVGFILANCFNMGLRITHSLLYIMRYYKGSPYQPLIGLLPS--PVVVCVLAVSA 478

Query: 393 VITLFSERIFLDRQDFWATFLIHFSVGLTCFCIS 426
            +T +SE + L     W   L H  VG  C  ++
Sbjct: 479 AVTGYSE-VALCCDKGWLLCLGHIVVGGLCLLVT 511

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Xenopus tropicalis (taxid: 8364)

>sp|Q96AA3|RFT1_HUMAN Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1

 Score =  173 bits (438), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/446 (31%), Positives = 228/446 (51%), Gaps = 37/446 (8%)

Query: 7   CDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFING 61
           C     + + ++ L + WLT+PLG+F ++   +  +W Q L   +P     YA  + + G
Sbjct: 70  CLSGGTQRDWSQTLNLLWLTVPLGVFWSLFLGW--IWLQLLEVPDPNVVPHYATGVVLFG 127

Query: 62  FACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI-VFALS 120
            + V+ELL EP ++L+Q  + ++L+++ E+++   +      L++  +    G+ +F+L+
Sbjct: 128 LSAVVELLGEPFWVLAQAHMFVKLKVIAESLSVILKSVLTAFLVL--WLPHWGLYIFSLA 185

Query: 121 QVAYAASLFLGYWGYFL-LFGAFKTS-----------DLFPFRLGNMMSYDKQLANMCTL 168
           Q+ Y   L L Y  YF  L G+ +++           DL P    N    + + A +   
Sbjct: 186 QLFYTTVLVLCYVIYFTKLLGSPESTKLQTLPVSRITDLLPNITRNGAFINWKEAKLTWS 245

Query: 169 FTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFA 226
           F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA
Sbjct: 246 FFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPIEESFYIFFA 305

Query: 227 RS-ASGQYPQKSKKIGNSLAEALKLVLLIGL-----VFMAFGPSYSYSLVRLLYGKKWSD 280
           +    G+     K+   ++A A+   LL            FG +YS   + +  G   S 
Sbjct: 306 KVLERGKDATLQKQEDVAVAAAVLESLLKLALLAGLTITVFGFAYSQLALDIYGGTMLSS 365

Query: 281 GEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS 340
           G     LR YCLYV++LA+NG +E F  A  +++++ R N  +L  S  ++V++ +L + 
Sbjct: 366 GSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKEEVDRYNFVMLALSSSFLVLSYLLTRW 425

Query: 341 AGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILL----VSGVITL 396
            GSVG ILAN  NM +RI  S  FI  Y++ S          S  P+LL    +SG +T 
Sbjct: 426 CGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRPLAGLHLS--PVLLGTFALSGGVTA 483

Query: 397 FSERIFLDRQDFWATFLIHFSVGLTC 422
            SE +FL  +  W   L H +VG  C
Sbjct: 484 VSE-VFLCCEQGWPARLAHIAVGAFC 508

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Homo sapiens (taxid: 9606)

>sp|Q8C3B8|RFT1_MOUSE Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2

 Score =  172 bits (435), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 144/463 (31%), Positives = 230/463 (49%), Gaps = 37/463 (7%)

Query: 7   CDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-----YAQAIFING 61
           C     + + ++ L + WLT+PLGIF +  +C   +W Q L   +P     Y   +   G
Sbjct: 70  CLSGGAQRDWSQTLNLLWLTVPLGIFWS--SCLGWVWLQLLEVPDPDVVPYYGTGVLFFG 127

Query: 62  FACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI-VFALS 120
            + V+ELL EP ++L+Q  + ++L+++ E+++   R     +L++  +    G+ +F+L+
Sbjct: 128 LSAVVELLGEPFWVLAQAHMFVKLKVLAESMSVILRSVLTALLVL--WLPHWGLYIFSLA 185

Query: 121 QVAYAASLFLGYWGYF------------LLFGAFKTSDLFPFRLGNMMSYDKQLANMCTL 168
           Q+ Y   L L Y  Y             L     + + L P    +    + + A +   
Sbjct: 186 QLLYTTVLVLCYAIYLIQLLRSPESAKQLTLPVSRVTQLLPSISRSRAFVNWKEAGLAWS 245

Query: 169 FTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEESSYATFA 226
           F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES Y  FA
Sbjct: 246 FFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPVEESFYLFFA 305

Query: 227 RSASGQYP---QKSKKIGNSLA---EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSD 280
           +    +     QK   +  + A     LKL LL GL    FG +YS   + +  G   S 
Sbjct: 306 KVLEREKDASLQKQDDVAVAAAVLESLLKLALLTGLTMTVFGFAYSQLALDIYGGAMLSS 365

Query: 281 GEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS 340
           G     +R YCLYV++LA+NG +E F+ A  +++++ R N ++L  S  ++V++ +L   
Sbjct: 366 GSGPVLMRCYCLYVLLLAINGVTECFMFAAMSKEEVDRYNFTMLALSSSFLVLSYLLTSW 425

Query: 341 AGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILL----VSGVITL 396
            GSVG I+AN  NM +RI  S  FI HYF+ S          S  P+LL    +S  IT 
Sbjct: 426 CGSVGFIMANCFNMGIRITQSLSFIHHYFRESPHRPLAGLRLS--PVLLGVFILSAGITS 483

Query: 397 FSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIY 439
            SE  FL  +  W   L H +VG  C  ++    +  E   I+
Sbjct: 484 VSEA-FLCCERGWPARLAHIAVGTICLGVTLGTAFLTETKLIH 525

May be involved in N-linked oligosaccharide assembly. May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Mus musculus (taxid: 10090)

>sp|Q9Y123|RFT1_DROME Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1

 Score =  152 bits (384), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/406 (29%), Positives = 201/406 (49%), Gaps = 58/406 (14%)

Query: 17  AKLLKVAWLTLPLGIFITIGACFFVLWWQGLS-----YSNPYAQAIFINGFACVLELLAE 71
           A+L+   WLT+P+   +    C ++ W   LS     Y++ Y  A +   F+CVLEL+AE
Sbjct: 83  AQLINQMWLTVPI-CAVLCAPCLYI-WLNWLSAVDAIYASQYEFACYAVAFSCVLELMAE 140

Query: 72  PLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG 131
               ++Q    ++L++++ T+    R   + + IV          FA++Q++ A ++ LG
Sbjct: 141 SAVFVAQVFCFVKLKILLNTLHILVRS-AIFLWIVTGDRSAAINAFAIAQLSSAVTIVLG 199

Query: 132 YWGYFLLF------------------------GAFKTSDLFPFRL-----------GNMM 156
            +G+F  +                          ++  D FPF+             N  
Sbjct: 200 QYGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQLSDFLPGVMFNPNGK 259

Query: 157 SYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY----NQAVYGLVDKLGSLVVRM 212
            ++++L  +   F  Q   K +L EGEK V+    +P      QA Y +V+ LGS+  R 
Sbjct: 260 HFNRELQTLTLSFVKQGVLKQILTEGEKYVMS--VSPVLSFGEQATYDVVNNLGSMAARF 317

Query: 213 VFLPFEESSYATFARSAS-----GQYPQKSKKIGNSLAEALKL-VLLIGLVFMAFGPSYS 266
           +F P E+SSY  F ++ S      + PQ+  +  +S+   L L V  IGL+   FG SYS
Sbjct: 318 IFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQASSVLNNLLLGVSSIGLIAFTFGQSYS 377

Query: 267 YSLVRLLYGKK--WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLL 324
           Y  V LLYG     + G   + L+++CL + +LA+NG SE ++ A  T   + + N  + 
Sbjct: 378 YP-VLLLYGGPDFVAGGLPQSLLQWHCLAIYLLAVNGISEGYMFATNTSRDIDKYNYLMA 436

Query: 325 VFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQ 370
           +FSV ++V++ IL    G VG I AN +NM+ RI+YS  +I+H ++
Sbjct: 437 IFSVSFLVLSYILTGIFGPVGFIFANCINMLSRILYSTYYIRHQYR 482

May be involved in N-linked oligosaccharide assembly.

Drosophila melanogaster (taxid: 7227)

>sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 200/418 (47%), Gaps = 62/418 (14%)

Query: 24  WLTLPLGI------FITIGACFFVLWWQGLSYSNPYAQ-AIFINGFACVLELLAEPLYIL 76
           W+  PL I      +  I A F  L         P+ + +IF+   + ++ELL+EP +I+
Sbjct: 119 WIGFPLSIGLIAWQYRNINAYFITL---------PFFRWSIFLIWLSIIVELLSEPFFIV 169

Query: 77  SQNLLLLRLRLVVETVATFSRCFTMCILI--VKQYEMEKGIV-------------FALSQ 121
           +Q +L    R   E++A  + C    I++  V+Q     G+V             FAL +
Sbjct: 170 NQFMLNYAARSRFESIAVTTGCIVNFIVVYAVQQSRYPMGVVTSDIDKEGIAILAFALGK 229

Query: 122 VAYAASLFLGY-WGYFLLFGAFKTSDLFPFRLGNMMS---------YDKQLANMCTLFTF 171
           +A++ +L   Y W Y      FK   LF  RL  + +         Y K  +        
Sbjct: 230 LAHSITLLACYYWDYL---KNFKPKKLFSTRLTKIKTRENNELKKGYPKSTSYFFQNDIL 286

Query: 172 QSFRKL--------LLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYA 223
           Q F+K+        LL EG+KL++  L T   Q +Y L+   GSL+ R++F P EES   
Sbjct: 287 QHFKKVYFQLCFKHLLTEGDKLIINSLCTVEEQGIYALLSNYGSLLTRLLFAPIEESLRL 346

Query: 224 TFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEA 283
             AR  S   P+  K     L    +  + + L+ + FGP+ S  L++ L G KWS    
Sbjct: 347 FLARLLSSHNPKNLKLSIEVLVNLTRFYIYLSLMIIVFGPANSSFLLQFLIGSKWSTTSV 406

Query: 284 STALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SA 341
              +R YC Y+  L++NG  EAF  +VAT DQ+ + +  ++ FS I+++ + +LI+    
Sbjct: 407 LDTIRVYCFYIPFLSLNGIFEAFFQSVATGDQILKHSYFMMAFSGIFLLNSWLLIEKLKL 466

Query: 342 GSVGLILANSLNMILRIIYSAIFIKHY----FQGSSSF----SFRSSLPSGWPILLVS 391
              GLIL+N +NM+LRI+Y  +F+  +    F  SS F     F++ + +G  I L+ 
Sbjct: 467 SIEGLILSNIINMVLRILYCGVFLNKFHRELFTDSSFFFNFKDFKTVIIAGSTICLLD 524

Involved in N-linked oligosaccharide assembly. Required for the translocation of Man(5)GlcNAc(2)-PP-dolichol from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FPE8|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1

 Score =  144 bits (364), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 198/385 (51%), Gaps = 47/385 (12%)

Query: 23  AWLTLPLGIFITIGACFFVLWWQ-----GLSYSNPYAQ-AIFINGFACVLELLAEPLYIL 76
           A + L +GI ++IG    ++ WQ     G   + P+ Q ++F      +LEL+ EPL++L
Sbjct: 98  AMIPLFIGIPLSIG----LIAWQYHNINGYFVTLPFFQWSVFAIWVGIILELVNEPLFVL 153

Query: 77  SQNLLLLRLRLVVETVATFSRC---FTMCI-----LIVKQY-----EMEKGIV---FALS 120
           +Q+ L    R   E++A  + C   FT+       LI+  Y        +GI    FAL 
Sbjct: 154 NQHFLNYGARSRYESIAVTANCLVNFTVVYSYEKKLILTSYFDDSERFREGIAILAFALG 213

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS-----FR 175
           ++AYAA+L + Y+  +L+   FK++   PF+L   +   K   N    + F+S     F+
Sbjct: 214 KLAYAATLLMCYYYNYLM--NFKSNK--PFKLS--LQKIKSKVNEKQTYYFRSDILEHFK 267

Query: 176 KL--------LLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 227
           K+        LL EG+KL++    T   Q +Y L+   GSL+ R++F P EES     A 
Sbjct: 268 KVYFQLCFKHLLTEGDKLIINTFCTVEEQGIYSLLSNYGSLITRLLFAPIEESLRLLLAV 327

Query: 228 SASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTAL 287
             S +  +  +     L    K  L + L+ M FGP+ S  L++ L G KWS      A+
Sbjct: 328 LLSKKDSKNLQLSMKVLVNLTKFYLYLSLLVMIFGPNNSSYLLQFLIGSKWSTNSVLHAI 387

Query: 288 RYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVG 345
           R YC+Y+  L+ NG  EAFL +VAT DQ+ R +  +++ S  +++ + I I+       G
Sbjct: 388 RVYCVYIPFLSFNGIFEAFLASVATGDQILRHSYFMMMCSFAFLINSWIFIEYLDLSVNG 447

Query: 346 LILANSLNMILRIIYSAIFIKHYFQ 370
           LI++N +NM LRIIYS  FI  +++
Sbjct: 448 LIISNIINMSLRIIYSFSFIVKFYR 472

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|O94302|RFT1_SCHPO Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1

 Score =  128 bits (322), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 184/390 (47%), Gaps = 29/390 (7%)

Query: 9   GASREENAAKLL--------KVAWLTLPLGIFITIGACFFVLWWQGLSYSN-PYAQA-IF 58
             S E N +K L          + +++ +GI I++    F  +    S  N PY++  IF
Sbjct: 83  STSTESNKSKKLSDQLQLIKNTSLISVYIGIVISLLVSLFYFY----SLPNFPYSKTCIF 138

Query: 59  INGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF-SRCFTMCILIVKQYEMEKGIVF 117
           I   +  +ELL+EP Y + Q           E + T      +  I ++ + +    + F
Sbjct: 139 IYTVSSFIELLSEPYYEVLQWRQKFSKTASAEGLGTIICSLLSFAISVLGRNKAPSSLPF 198

Query: 118 ALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY---DKQLANMCTLFTFQSF 174
           AL  ++   ++F     + L + A +   +F  ++G    Y   D     +    T+Q  
Sbjct: 199 ALGNLSEKVTIF-----FTLRYFAKQPFSIFLHKVGENERYIFWDSSTLRIICSHTYQVL 253

Query: 175 RKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYP 234
            K L+ +G+K+++ W  +P  Q  Y L    GSL+ R+VF P E+ S+  FA+    +  
Sbjct: 254 LKHLITKGDKIMVAWYASPSAQGPYALASNYGSLLARIVFRPVEDHSHIVFAQLTHYKNK 313

Query: 235 QKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV 294
           +  KK  N LA  LKL   + L F+ FG +YS  ++    G KW+  ++S+ L +Y +Y+
Sbjct: 314 KDEKKALNLLAWILKLYSYMSL-FILFGSNYSDIVLLFGAGSKWASPDSSSILSWYAMYI 372

Query: 295 VVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSL 352
             +A NG  EAF  + A   QL       L  +V Y +    L+   + GS GLILAN L
Sbjct: 373 PFMAANGVLEAFYVSAANSSQLYDQGKCYLASAVFYFITGKFLLSWFNLGSHGLILANIL 432

Query: 353 NMILRIIYSAIFIKHYFQGSSSFSFRSSLP 382
           N+ LRI ++  FI H ++    FS   SLP
Sbjct: 433 NLSLRICFALRFILHNYKD---FSLPRSLP 459

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q754Q7|RFT1_ASHGO Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 177/359 (49%), Gaps = 28/359 (7%)

Query: 53  YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILI------- 105
           ++ +I++   + + EL +EPLY+++Q +L  R R   E  A  + C     +I       
Sbjct: 129 FSWSIYLVLLSILAELASEPLYVVNQFMLNYRKRSQFEGAAVAASCLVNFAVIYWYENWV 188

Query: 106 ------VKQYEMEKGIV---FALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL---- 152
                 V     ++GI    FAL +VA A +L   Y+  ++   A +   LF   L    
Sbjct: 189 NGRGETVHDSYKQEGIAVLAFALGKVARAMTLLALYYVDYVRHLAHE--KLFSLSLTKVR 246

Query: 153 --GNMMS--YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSL 208
             G++ +  +D  +        FQ   K LL EG+KL++  L T   Q +Y L+   GSL
Sbjct: 247 VPGSVYTAYFDSDVLQHFKKVYFQLCFKHLLTEGDKLIINSLCTVEEQGIYSLLSNYGSL 306

Query: 209 VVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYS 268
           + RMVF P EES      R  S +  Q        L   +K  L + LV + FGP+ S  
Sbjct: 307 ITRMVFAPIEESLLLFLTRLLSDKTQQNLHICMRVLVNLVKFYLYLALVIVIFGPTNSSF 366

Query: 269 LVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSV 328
           L++ L G KWS       +R YC Y+  L+MNG  EAF  +VA+ D++ R +  +++ S 
Sbjct: 367 LLKFLIGSKWSSTSVLETIRVYCFYLPFLSMNGILEAFFASVASGDEILRHSYLMMLLSG 426

Query: 329 IYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGW 385
           ++++   + +   +    GLI +N +NM LRIIY + +I+ +++   + S ++SL S +
Sbjct: 427 VFLLNCWVFLAHFNLSLEGLIFSNIINMTLRIIYCSNYIRGFYKRLFADSKQTSLSSSF 485

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|P40913|RFT1_KLULA Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2

 Score =  125 bits (315), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 196/417 (47%), Gaps = 47/417 (11%)

Query: 6   KCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSN--------PYAQA- 56
           K +          L+   ++   +G+ ++I     ++ WQ   YSN        PY +A 
Sbjct: 84  KVEDGEDTRTLQSLINFGYIPFVIGLPLSI----ILISWQ---YSNLNSYFIDLPYFKAS 136

Query: 57  IFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGI- 115
           IF+   + ++EL++EP Y++ Q LL   +R   E++     C    I++V   +M  G+ 
Sbjct: 137 IFLIWLSILIELVSEPFYLVHQYLLNHFIRSKYESLGVTFACVANFIIVVWFEKMVNGVG 196

Query: 116 ---------------VFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDK 160
                           FA+ ++ +A +L L  + Y      + T + + ++L  +    +
Sbjct: 197 LELHDDYKQEGIAIFAFAVGKLVHAMTL-LACYSYNYYSEVYTTGERYSYKLTKIRPETR 255

Query: 161 QLANMCTLFTFQSFRKL--------LLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRM 212
           Q +      T Q F+K+        LL EG+KL++  L T   Q +Y L+   GSL+ R+
Sbjct: 256 QESYYFQNDTVQHFKKVYFQLCFKHLLTEGDKLIINSLCTVEEQGIYSLLSNYGSLITRL 315

Query: 213 VFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRL 272
           +F P EE+     AR  S    +        L +  K  L + L  + FGP  S  L++ 
Sbjct: 316 LFAPIEEALRLFLARLLSVSSKKNLWLSMKVLIDLTKFYLYLSLFIIIFGPINSSYLLKF 375

Query: 273 LYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIV 332
           + G KWS       +R YC Y+  L++NG  EAF  +VA+ DQ+ + +  +++FS I++ 
Sbjct: 376 VIGSKWSSTSFLETIRTYCFYIPFLSLNGIFEAFFQSVASGDQIFKHSYVMMLFSGIFLF 435

Query: 333 MNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKHYF----QGSSSFSFRSSLPS 383
              + I+       GLI++N LNM LRI Y   FI  ++    + SS+ + +S LP+
Sbjct: 436 NCWLFIEYFDLSLEGLIVSNILNMALRIAYCGNFIHKFYHYLLKESSTETTQSILPN 492

May participate in the translocation of oligosaccharide from the cytoplasmic side to the lumenal side of the endoplasmic reticulum membrane.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
224138472	476	predicted protein [Populus trichocarpa]	1.0	0.943	0.792	0.0
38260621	481	nuclear division RFT1-like protein [Sisy	0.997	0.931	0.736	0.0
356531685	518	PREDICTED: protein RFT1 homolog [Glycine	0.997	0.864	0.750	0.0
356544271	518	PREDICTED: LOW QUALITY PROTEIN: protein	0.997	0.864	0.739	0.0
38260690	478	nuclear division RFT1-like protein [Arab	1.0	0.939	0.713	0.0
297806793	478	hypothetical protein ARALYDRAFT_325378 [	1.0	0.939	0.713	0.0
38260636	478	nuclear division RFT1-like protein [Arab	1.0	0.939	0.713	0.0
334187490	611	lipid transporter [Arabidopsis thaliana]	1.0	0.734	0.698	0.0
449458359	528	PREDICTED: protein RFT1 homolog [Cucumis	0.995	0.846	0.732	0.0
38260654	478	nuclear division RFT1-like protein [Caps	1.0	0.939	0.707	0.0

>gi|224138472|ref|XP_002326611.1| predicted protein [Populus trichocarpa] gi|222833933|gb|EEE72410.1| predicted protein [Populus trichocarpa]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/449 (79%), Positives = 402/449 (89%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           MRADIKCDGAS EE AAKLLKVAW+TLPLG+  TI AC FV WWQGL+YS+PYAQAI IN
Sbjct: 28  MRADIKCDGASTEEYAAKLLKVAWITLPLGVVTTISACVFVFWWQGLTYSDPYAQAILIN 87

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           G AC+LELLAEPLYI+SQNLLLL+LRL+VET AT  RC TM ILIVKQ  M+KGIVFALS
Sbjct: 88  GCACILELLAEPLYIVSQNLLLLKLRLIVETAATLLRCLTMYILIVKQTSMDKGIVFALS 147

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           Q AY A LFLGYW YF+LF AF++S LFPFRLG +M YDKQL++MC LFT QSF+KL+LQ
Sbjct: 148 QTAYGACLFLGYWSYFVLFRAFRSSVLFPFRLGTIMDYDKQLSSMCVLFTLQSFQKLILQ 207

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEK VLVWLDTPYNQAVYGLVDKLG LVVR+VFLPFEESSYATFARSASG+ P KS+K+
Sbjct: 208 EGEKFVLVWLDTPYNQAVYGLVDKLGILVVRLVFLPFEESSYATFARSASGKDPNKSRKL 267

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
           G+ L+EALKLVLLIG+VFM FGPSYSYSL+R+LYG+KWSDGEASTAL+YYC YV+VLAMN
Sbjct: 268 GSCLSEALKLVLLIGVVFMTFGPSYSYSLIRMLYGRKWSDGEASTALQYYCFYVIVLAMN 327

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAFLHAVATE QLKRSNDSLLVFS+IY+VMNV+LI+SAG+VGLILANSLNMILRIIY
Sbjct: 328 GTSEAFLHAVATESQLKRSNDSLLVFSLIYVVMNVLLIKSAGAVGLILANSLNMILRIIY 387

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           SA+FIK+YFQ SS+FSF S LPSGW +LL SGVITL SE++FLD ++FW TFLIHFS+GL
Sbjct: 388 SAVFIKYYFQDSSAFSFTSCLPSGWTVLLFSGVITLISEKLFLDHENFWPTFLIHFSIGL 447

Query: 421 TCFCISSIVIYHRERSFIYKIIRFRNHKD 449
           TCFCISS +IY RER FI +IIRFR+H D
Sbjct: 448 TCFCISSFIIYRRERPFINRIIRFRDHMD 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260621|gb|AAR15439.1| nuclear division RFT1-like protein [Sisymbrium irio]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/451 (73%), Positives = 385/451 (85%), Gaps = 3/451 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           +RADI  DG   E +  KLLKVAW+TLPLGI ITI AC FV WWQ LSYS+ YAQAI I+
Sbjct: 28  LRADINSDGRVSEMDVTKLLKVAWVTLPLGIVITIAACIFVFWWQNLSYSDTYAQAILIH 87

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           GF+CVLEL+AEPLYILSQ L+LL+LRLVVETVATFSRC T+C LIVKQ  MEKGI+FALS
Sbjct: 88  GFSCVLELMAEPLYILSQTLMLLKLRLVVETVATFSRCVTLCFLIVKQTNMEKGIIFALS 147

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           QVAY  SLFLGYW YFL+ G FK+ +LFPFR GN M +DK L++MC LFTFQSFRKL+LQ
Sbjct: 148 QVAYGGSLFLGYWAYFLVRGIFKSLNLFPFRRGNFMDFDKPLSSMCMLFTFQSFRKLILQ 207

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG-QYPQKSKK 239
           EGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVFLPFEESSY TFAR ASG  Y QK K+
Sbjct: 208 EGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFLPFEESSYTTFARFASGDDYQQKRKR 267

Query: 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 299
           +G  L EALKLV+LIGLVFMAFGP YSYSL+RLLYG+KWSDGEAS AL++YCLY++VLAM
Sbjct: 268 LGICLTEALKLVMLIGLVFMAFGPGYSYSLIRLLYGEKWSDGEASVALQFYCLYIIVLAM 327

Query: 300 NGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRII 359
           NGTSEAFLHA+ TEDQLKRSND LLVFSV+YI +N++LI+SAG++GLILANSLNMI RII
Sbjct: 328 NGTSEAFLHAIGTEDQLKRSNDMLLVFSVLYITLNILLIRSAGAIGLILANSLNMIFRII 387

Query: 360 YSAIFIKHYFQG--SSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFS 417
           YS  FI+ YFQG  SSSFSFR   PSGW +L++SG+IT+ SE+  LD+++FWATF +HF+
Sbjct: 388 YSGQFIQRYFQGDPSSSFSFRECFPSGWQVLILSGIITVISEKTILDQKNFWATFPVHFA 447

Query: 418 VGLTCFCISSIVIYHRERSFIYKIIRFRNHK 448
           +G  CFC+S+IVIY RE  FI +IIRFRNH 
Sbjct: 448 IGFLCFCVSAIVIYRRETLFINRIIRFRNHD 478

Source: Sisymbrium irio

Species: Sisymbrium irio

Genus: Sisymbrium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531685|ref|XP_003534407.1| PREDICTED: protein RFT1 homolog [Glycine max]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/449 (75%), Positives = 383/449 (85%), Gaps = 1/449 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           +R D+KCDG+S  +   KL+KV W++ PLGIFITI  C FV WWQ +SYS+P+ QAI IN
Sbjct: 71  LRMDLKCDGSSMGD-VVKLMKVVWMSFPLGIFITIVVCLFVFWWQQISYSSPHGQAILIN 129

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           GFAC+LELLAEP+YILSQNL+LL LRL+VETVAT SRC TM  LIVKQ  MEK I+FALS
Sbjct: 130 GFACILELLAEPVYILSQNLVLLELRLMVETVATLSRCLTMYFLIVKQTGMEKSIIFALS 189

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           Q AY A LFLGYWGY LL   F+ S LFPFR G M+ +D+QL+ MC LFTFQSFRKL+LQ
Sbjct: 190 QSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKMIDFDQQLSKMCILFTFQSFRKLILQ 249

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY TFARSASGQYP KSKK+
Sbjct: 250 EGEKIVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYVTFARSASGQYPGKSKKL 309

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
           GNSL E+LKLVLLIGLVFMAFGPSYSYSL+RLLYG+KWSDGEASTALR YC YV+VLAMN
Sbjct: 310 GNSLTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVIVLAMN 369

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAF+HAVATE QLKRSNDSLL+FS+IYIV+NV+LI+ AG+VGLILANSLNM LRI+Y
Sbjct: 370 GTSEAFMHAVATERQLKRSNDSLLIFSLIYIVLNVMLIRLAGAVGLILANSLNMTLRILY 429

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           SA FIK+YFQGSSSFSF   LPSGW  LL+SGVITL SE + LDR +F  +F+ H SVGL
Sbjct: 430 SATFIKNYFQGSSSFSFCGCLPSGWITLLLSGVITLVSENVLLDRDNFSLSFMFHLSVGL 489

Query: 421 TCFCISSIVIYHRERSFIYKIIRFRNHKD 449
            CFC+SS VIY RE+ FI +IIRF +H D
Sbjct: 490 ACFCVSSYVIYCREKPFIRRIIRFNDHVD 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544271|ref|XP_003540577.1| PREDICTED: LOW QUALITY PROTEIN: protein RFT1 homolog [Glycine max]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/449 (73%), Positives = 382/449 (85%), Gaps = 1/449 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           +R D+KCDG S  +   KL+KV W++ PLGIFIT+  C FV WWQ +SYS+P+ QAI IN
Sbjct: 71  LRMDLKCDGTSMGD-VVKLMKVVWMSFPLGIFITVVVCLFVFWWQQISYSSPHGQAILIN 129

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           GFAC+LELLAEP+YILSQNL+LL LRL+VETVAT S C TM  LIVKQ  +EK I+FALS
Sbjct: 130 GFACILELLAEPVYILSQNLVLLELRLMVETVATLSWCLTMYFLIVKQTGIEKSIIFALS 189

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           Q AY A LFLGYWGY LL   F+ S LFPFR G ++ +D+QL+ MC LFTFQSFRKL+LQ
Sbjct: 190 QSAYGACLFLGYWGYLLLSQKFRVSYLFPFREGKVIDFDRQLSKMCMLFTFQSFRKLILQ 249

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEK+VLVWLDTPYNQAVYGLVDK GSLVVR+VFLPFEESSYATFARS SGQYP KSKK+
Sbjct: 250 EGEKIVLVWLDTPYNQAVYGLVDKFGSLVVRLVFLPFEESSYATFARSTSGQYPGKSKKL 309

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
           GN + E+LKLVLLIGLVFMAFGPSYSYSL+RLLYG+KWSDGEASTALR YC YV+VLAMN
Sbjct: 310 GNGVTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASTALRCYCFYVIVLAMN 369

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAF+HAVATE QLKRSNDSLLVFS+IYIV+NV+LI+SAG+VGLI+ANSLNM LRI+Y
Sbjct: 370 GTSEAFMHAVATESQLKRSNDSLLVFSLIYIVLNVLLIRSAGAVGLIMANSLNMTLRILY 429

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           SAIFIK+YFQGSSSFSF   LPSGW  LL+SGVITL SE + LDR +F  +F++H SVGL
Sbjct: 430 SAIFIKNYFQGSSSFSFYGCLPSGWIALLLSGVITLISENVLLDRDNFXPSFILHLSVGL 489

Query: 421 TCFCISSIVIYHRERSFIYKIIRFRNHKD 449
            CFC+SS VIY RE+ FI +IIRF +H D
Sbjct: 490 VCFCVSSYVIYCREKPFIRRIIRFNDHVD 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260690|gb|AAR15504.1| nuclear division RFT1-like protein [Arabidopsis arenosa]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/451 (71%), Positives = 380/451 (84%), Gaps = 2/451 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           +RA+IK DG   EEN  +LLKVAW+T+PLGI ITI AC FVLWWQ LSYS+ YAQAI I+
Sbjct: 28  LRANIKRDGPGSEENVTRLLKVAWMTVPLGIAITIAACIFVLWWQNLSYSDTYAQAILIH 87

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           GFAC+LEL+AEPLYILSQ L+ L LRL VE  ATF+RC T+  LIV Q  MEKGIVFALS
Sbjct: 88  GFACLLELMAEPLYILSQTLVKLELRLFVEIAATFARCLTLWSLIVNQTNMEKGIVFALS 147

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           QVAY  SLFLGYW YFL+ GA ++SDLFPFR GN M +D +L+NMC LFTFQSFRKL+LQ
Sbjct: 148 QVAYGGSLFLGYWAYFLISGALRSSDLFPFRPGNFMDFDNKLSNMCMLFTFQSFRKLILQ 207

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF PFEE+SY  FAR ASG Y ++ KK+
Sbjct: 208 EGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFFPFEETSYTIFARFASGDYQERKKKL 267

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
           G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEAS AL++YCLY++VLAMN
Sbjct: 268 GIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEASLALQFYCLYIIVLAMN 327

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAFLHAV TE++LKRSND LLVFS+IY+ +N++LI+SAG++GLI+ANSLNMI RIIY
Sbjct: 328 GTSEAFLHAVGTENELKRSNDMLLVFSLIYVTLNILLIRSAGAIGLIMANSLNMIFRIIY 387

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           S  FI+ YFQG+SSFSFR   P GW IL++S +ITL SE+  LDR++FW TF +HF++G 
Sbjct: 388 SGKFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTILDRKNFWETFPLHFAIGF 447

Query: 421 TCFCISSIVIYHRERSFIYKIIRFR--NHKD 449
            CFC+S+IVIY RER FI +IIRFR  NH D
Sbjct: 448 ICFCLSAIVIYRRERVFIKRIIRFRDYNHDD 478

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806793|ref|XP_002871280.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata] gi|297317117|gb|EFH47539.1| hypothetical protein ARALYDRAFT_325378 [Arabidopsis lyrata subsp. lyrata]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/451 (71%), Positives = 379/451 (84%), Gaps = 2/451 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           +RA+IK DG   EEN  +LLKVAW+T+PLGI ITI AC FVLWWQ LSYS+ YAQAI I+
Sbjct: 28  LRANIKRDGPGSEENVTRLLKVAWVTVPLGIAITIAACIFVLWWQNLSYSDTYAQAILIH 87

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           GFACVLEL+AEPLYILSQ L+ L LRL VE  ATF+RC T+  LIV Q  MEKGIVFALS
Sbjct: 88  GFACVLELMAEPLYILSQTLVKLELRLFVEIAATFARCVTLWSLIVNQTNMEKGIVFALS 147

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           QVAY  SLFLGYW YFL+ G  ++SDLFPFR GN M +D +L+NMC LFTFQSFRKL+LQ
Sbjct: 148 QVAYGGSLFLGYWAYFLICGVLRSSDLFPFRPGNFMDFDNKLSNMCMLFTFQSFRKLILQ 207

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF PFEE+SY  FAR ASG Y ++ KK+
Sbjct: 208 EGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFFPFEETSYTIFARFASGDYQERKKKL 267

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
           G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEAS AL++YCLY++VLAMN
Sbjct: 268 GIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEASLALQFYCLYIIVLAMN 327

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAFLHAV TE++LKRSND LLVFS+IY+ +N++LI+SAG++GLI+ANSLNMI RIIY
Sbjct: 328 GTSEAFLHAVGTENELKRSNDMLLVFSLIYVALNILLIRSAGAIGLIMANSLNMIFRIIY 387

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           S  FI+HYFQG+SSFSFR   P GW IL++S +ITL SE+  LDR++FW TF +HF++G 
Sbjct: 388 SGKFIQHYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTILDRKNFWETFPLHFAIGF 447

Query: 421 TCFCISSIVIYHRERSFIYKIIRFR--NHKD 449
            CFC+S+IVIY RER FI +II FR  NH D
Sbjct: 448 ICFCLSAIVIYRRERVFIKRIIHFRDYNHDD 478

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260636|gb|AAR15453.1| nuclear division RFT1-like protein [Arabidopsis arenosa]

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/451 (71%), Positives = 380/451 (84%), Gaps = 2/451 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           +RA+IK DG   EEN  +LLKVAW+T+PLGI ITI AC FVLWWQ LSYS+ YAQAI I+
Sbjct: 28  LRANIKRDGPGSEENVTRLLKVAWMTVPLGIAITIAACIFVLWWQNLSYSDTYAQAILIH 87

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           GFAC+LEL+AEPLYILSQ L+ L LRL VE  ATF+RC T+  LIV Q  MEKGIVFALS
Sbjct: 88  GFACLLELMAEPLYILSQTLVKLELRLFVEIAATFARCLTLWSLIVNQTNMEKGIVFALS 147

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           QVAY  SLFLGYW YFL+ GA ++SDLFPFR GN M +D +L+NMC LFTFQSFRKL+LQ
Sbjct: 148 QVAYGGSLFLGYWTYFLISGALRSSDLFPFRPGNFMDFDNKLSNMCMLFTFQSFRKLILQ 207

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVF PFEE+SY  FAR ASG Y ++ KK+
Sbjct: 208 EGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFFPFEETSYTIFARFASGDYQERKKKL 267

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
           G  L EALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEAS AL++YCLY++VLAMN
Sbjct: 268 GIGLTEALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEASLALQFYCLYIIVLAMN 327

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAFLHAV TE++LKRSND LLVFS+IY+ +N++LI+SAG++GLI+ANSLNMI RIIY
Sbjct: 328 GTSEAFLHAVGTENELKRSNDMLLVFSLIYVTLNILLIRSAGAIGLIMANSLNMIFRIIY 387

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           S  FI+ YFQG+SSFSFR   P GW IL++S +ITL SE+  LDR++FW TF +HF++G 
Sbjct: 388 SGKFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTILDRKNFWETFPLHFAIGF 447

Query: 421 TCFCISSIVIYHRERSFIYKIIRFR--NHKD 449
            CFC+S+IVIY RER FI +IIRFR  NH D
Sbjct: 448 ICFCLSAIVIYRRERVFIKRIIRFRDYNHDD 478

Source: Arabidopsis arenosa

Species: Arabidopsis arenosa

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187490|ref|NP_196380.5| lipid transporter [Arabidopsis thaliana] gi|332003804|gb|AED91187.1| lipid transporter [Arabidopsis thaliana]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/451 (69%), Positives = 380/451 (84%), Gaps = 2/451 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           +RA  K DG   EEN  ++LKVAW+T+PLGI ITI AC FVLWWQ LSYS+PYAQAI+I+
Sbjct: 161 LRAGTKRDGPESEENVTRILKVAWVTVPLGIAITIAACIFVLWWQNLSYSDPYAQAIWIH 220

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           GFACVLEL+AEPLYILSQ LL L+LRL+VETVAT +RC T+  L+V Q  MEK I+FALS
Sbjct: 221 GFACVLELMAEPLYILSQTLLKLQLRLIVETVATLARCVTLYSLLVMQTNMEKVIIFALS 280

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           QVAY  SLF+GYW YFL+ G +++S+LFPFR GN M +D  L+ MC LFTFQSFRKL+LQ
Sbjct: 281 QVAYGGSLFIGYWAYFLICGVYRSSNLFPFRPGNFMDFDNDLSKMCKLFTFQSFRKLILQ 340

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEKLVLVWLDTPYNQAVYG+VDKLGSLVVRMVFLPFEESSY  FAR ASG Y +++KK+
Sbjct: 341 EGEKLVLVWLDTPYNQAVYGIVDKLGSLVVRMVFLPFEESSYTIFARFASGDYQERNKKL 400

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
           G  L  ALKLV+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEAS AL++YCLY++VLAMN
Sbjct: 401 GIYLTVALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEASLALQFYCLYIIVLAMN 460

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAFLHAV T+++L+RSND LL+FS+IY+ +N++LI+SAG++GLI+ANSLNMI RIIY
Sbjct: 461 GTSEAFLHAVGTKNELERSNDMLLIFSLIYVALNILLIRSAGAIGLIMANSLNMIFRIIY 520

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           S  FI+ YFQG+SSFSFR   P GW IL++S +ITL SE+  LDR++FW TF +HF +G+
Sbjct: 521 SGRFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTILDRKNFWETFPLHFGIGV 580

Query: 421 TCFCISSIVIYHRERSFIYKIIRFR--NHKD 449
            CFC+S+IVIY RER FI +I RFR  NH D
Sbjct: 581 ICFCLSAIVIYRRERVFIKRIKRFRDYNHDD 611

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458359|ref|XP_004146915.1| PREDICTED: protein RFT1 homolog [Cucumis sativus] gi|449520289|ref|XP_004167166.1| PREDICTED: protein RFT1 homolog [Cucumis sativus]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/449 (73%), Positives = 385/449 (85%), Gaps = 2/449 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           MRA++  D  S EEN+ +LLKVAWL+ PLG+FIT+ AC  VLWW+ +  SNPYAQAI IN
Sbjct: 82  MRAELS-DSTSVEENSRRLLKVAWLSFPLGLFITLAACNLVLWWRNIPLSNPYAQAILIN 140

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           G AC+LELLAEPLYILSQ LLLL+LRL+VET+ATFSRC TM IL+V+   MEKGI+FALS
Sbjct: 141 GCACILELLAEPLYILSQTLLLLKLRLLVETMATFSRCMTMYILLVRGSNMEKGIIFALS 200

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           Q AY A LFLGYW YFL F AFK SDLFPFR+GNM  +DK+L+NMC LFT QSFRKL+LQ
Sbjct: 201 QSAYGACLFLGYWVYFLNFRAFKWSDLFPFRVGNMKDFDKKLSNMCILFTLQSFRKLVLQ 260

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEK+VLVWLDTPYNQAVYGLVDKLGSLVVR+VFLPFEESSY TFARSASG+YP K++K+
Sbjct: 261 EGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYTTFARSASGEYPDKTRKL 320

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
              L+EALKLV+LIGL+FMAFGPSYSY+L+RLLYG+KWSDGEA TALRYYCLY++VLAMN
Sbjct: 321 AICLSEALKLVVLIGLIFMAFGPSYSYALIRLLYGQKWSDGEAPTALRYYCLYIIVLAMN 380

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAFLHAVA E QLK+SNDSLL+FS IY+++N +LI+S+G VGLI ANS+NMILRI Y
Sbjct: 381 GTSEAFLHAVANESQLKKSNDSLLLFSFIYVMLNFLLIRSSGVVGLIFANSINMILRITY 440

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           SAIFIK YF+ + SFSF S LPSGW  LL+SGV+TL SER+FLD+Q FW+TF +HFS+GL
Sbjct: 441 SAIFIKGYFK-NPSFSFNSCLPSGWIFLLLSGVLTLISERLFLDQQKFWSTFSLHFSIGL 499

Query: 421 TCFCISSIVIYHRERSFIYKIIRFRNHKD 449
            CF +S  +IY RERSF  KI+RFR H D
Sbjct: 500 ACFLVSLCIIYRRERSFFNKIVRFRQHSD 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260654|gb|AAR15470.1| nuclear division RFT1-like protein [Capsella rubella]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/451 (70%), Positives = 381/451 (84%), Gaps = 2/451 (0%)

Query: 1   MRADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFIN 60
           +RADI  DG    EN  +LLKVAW+T PLGI ITI A  FVLWWQ LSYS+PYAQAI I+
Sbjct: 28  LRADINSDGLGSVENVTRLLKVAWMTFPLGIAITIAASVFVLWWQNLSYSDPYAQAILIH 87

Query: 61  GFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALS 120
           GFACVLEL+AEPLYILSQ LL LRLRL+VETVAT +RC T+C L+V Q  MEK I+FALS
Sbjct: 88  GFACVLELIAEPLYILSQTLLRLRLRLIVETVATVARCVTLCSLLVMQTNMEKVIIFALS 147

Query: 121 QVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 180
           QVAY  SLFLGYW YFL+ G +++SDLFPFR GN+M++D+QL+NM  LFTFQSFRKL+LQ
Sbjct: 148 QVAYGGSLFLGYWAYFLICGVYRSSDLFPFRPGNLMNFDRQLSNMSMLFTFQSFRKLILQ 207

Query: 181 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI 240
           EGEKLVLVWLDTPYNQAVYG+VDKLG+LVVRMVFLPFEESSYATFAR ASG + ++ KK+
Sbjct: 208 EGEKLVLVWLDTPYNQAVYGIVDKLGNLVVRMVFLPFEESSYATFARFASGDHQERKKKL 267

Query: 241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 300
           G  L EALK V+LIGL+FMAFGPSYSYSL+RLLYG+KWSDGEAS AL++YCLY++VLAMN
Sbjct: 268 GICLTEALKFVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEASLALQFYCLYIIVLAMN 327

Query: 301 GTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIY 360
           GTSEAFLHAV +E++L+RSND LLVFS++Y+ +N++LI+SAG++GLI+ANSLNMI RIIY
Sbjct: 328 GTSEAFLHAVGSENELQRSNDMLLVFSLVYVTLNILLIRSAGAIGLIMANSLNMIFRIIY 387

Query: 361 SAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGL 420
           S  FI+ YFQG+SSFSFR   P GW IL++S +ITL SE+  L R +FW TF +HF++G 
Sbjct: 388 SGKFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTVLHRMNFWGTFPLHFAIGF 447

Query: 421 TCFCISSIVIYHRERSFIYKIIRFR--NHKD 449
            CFC+S+IVIY RER FI +II FR  NH D
Sbjct: 448 ICFCVSAIVIYRRERLFIKRIIHFRDYNHDD 478

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	449
MGI|MGI:3607791	541	Rft1 "RFT1 homolog (S. cerevis	0.608	0.504	0.358	1.1e-46
DICTYBASE|DDB_G0288491	540	rft1 "RFT1 family protein" [Di	0.265	0.220	0.436	4.7e-42
UNIPROTKB|F1P5L5	535	RFT1 "Uncharacterized protein"	0.639	0.536	0.363	7e-38
ZFIN|ZDB-GENE-110411-126	540	rft1 "RFT1 homolog (S. cerevis	0.657	0.546	0.346	2.4e-37
FB|FBgn0027564	556	CG3149 [Drosophila melanogaste	0.601	0.485	0.324	2.1e-36
UNIPROTKB|E1BNC6	541	RFT1 "Uncharacterized protein"	0.654	0.543	0.339	1.2e-35
SGD|S000000116	574	RFT1 "Membrane protein require	0.610	0.477	0.308	1.5e-35
UNIPROTKB|E2RQ01	541	RFT1 "Uncharacterized protein"	0.650	0.539	0.353	2.4e-35
UNIPROTKB|Q96AA3	541	RFT1 "Protein RFT1 homolog" [H	0.623	0.517	0.360	3.1e-35
UNIPROTKB|B5MDE0	502	RFT1 "Protein RFT1 homolog" [H	0.623	0.557	0.360	3.1e-35

MGI|MGI:3607791 Rft1 "RFT1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 379 (138.5 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 104/290 (35%), Positives = 152/290 (52%)

Query:   163 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDKLGSLVVRMVFLPFEES 220
             A +   F  QSF K +L EGE+ V+ +L+     +Q VY +V+ LGSLV R++F P EES
Sbjct:   240 AGLAWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIFQPVEES 299

Query:   221 SYATFAR------SASGQYPQKSKKIGNSLAEAL-KLVLLIGLVFMAFGPSYSYSLVRLL 273
              Y  FA+       AS Q  Q    +  ++ E+L KL LL GL    FG +YS   + + 
Sbjct:   300 FYLFFAKVLEREKDASLQ-KQDDVAVAAAVLESLLKLALLTGLTMTVFGFAYSQLALDIY 358

Query:   274 YGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVM 333
              G   S G     +R YCLYV++LA+NG +E F+ A  +++++ R N ++L  S  ++V+
Sbjct:   359 GGAMLSSGSGPVLMRCYCLYVLLLAINGVTECFMFAAMSKEEVDRYNFTMLALSSSFLVL 418

Query:   334 NVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXXXXXXXXLPSGWPILL---- 389
             + +L    GSVG I+AN  NM +RI  S  FI HYF+            S  P+LL    
Sbjct:   419 SYLLTSWCGSVGFIMANCFNMGIRITQSLSFIHHYFRESPHRPLAGLRLS--PVLLGVFI 476

Query:   390 VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIY 439
             +S  IT  SE  FL  +  W   L H +VG  C  ++    +  E   I+
Sbjct:   477 LSAGITSVSEA-FLCCERGWPARLAHIAVGTICLGVTLGTAFLTETKLIH 525

GO:0003674 "molecular_function" evidence=ND

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0288491 rft1 "RFT1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 261 (96.9 bits), Expect = 4.7e-42, Sum P(2) = 4.7e-42
 Identities = 52/119 (43%), Positives = 76/119 (63%)

Query:   238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVL 297
             K   N L   +K ++L+ LVF  FGP +S+ L+ LLY  K+ D  A   L +YC+YV  L
Sbjct:   348 KNGANVLIVIMKFLILVSLVFTCFGPGFSHLLLNLLYNNKFRDTNAGVLLGFYCIYVGFL 407

Query:   298 AMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMIL 356
             A+NG SE+F+H+VA EDQLK  N  L++   IY++  +I  +   ++G+ILAN LN+ L
Sbjct:   408 AINGVSESFVHSVAKEDQLKTVNWVLIIIGFIYLLFTLIFCKLFQNIGIILANCLNIKL 466

GO:0016021 "integral to membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1P5L5 RFT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 112/308 (36%), Positives = 162/308 (52%)

Query:   152 LGNMMSYDKQLAN-----MCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYGLVDK 204
             L N+M+ DK   N     +   F  QSF K +L EGE+ V+ +L+     +Q VY  V+ 
Sbjct:   220 LPNLMA-DKTFLNWKEARLTWSFFKQSFLKQILTEGERYVMTFLNVINFGDQGVYDAVNN 278

Query:   205 LGSLVVRMVFLPFEESSYATFARSAS-GQYPQKSKK-----IGNSLAEALKLVLLIGLVF 258
             LGSLV R +FLP EES Y  FA+    G+  +  K+       N L   LKLVLLIGL  
Sbjct:   279 LGSLVARFIFLPIEESFYVFFAQVLERGKNVKDQKQDDVAMAANVLELLLKLVLLIGLTI 338

Query:   259 MAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 318
               FG ++S   + +  G   S G     LR Y LYV+ LA+NG +E F  A   ++++ R
Sbjct:   339 AVFGYAFSQLALDIYGGSMLSSGTGPDLLRCYSLYVLFLAVNGVTECFTFASMCKEEVDR 398

Query:   319 SNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXXXXXX 378
              N  +L  S  ++ ++  L +  GSVG ILAN  NM +RI +S  +I  YF+        
Sbjct:   399 YNFVMLALSFTFLCISYFLTRWHGSVGFILANCFNMGIRIAHSIHYIYGYFKESSYRPLT 458

Query:   379 XXLPSGWPIL--LVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERS 436
               LPS + +L  ++SG IT++SE  F   +  W   LIH S+G  CF  +++ +   E  
Sbjct:   459 GLLPSPFLVLAYIISGGITVYSEAFFCCDKG-WTARLIHISIGALCFAATTVTMLCTET- 516

Query:   437 FIYKIIRF 444
                K++RF
Sbjct:   517 ---KLVRF 521

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-110411-126 rft1 "RFT1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 106/306 (34%), Positives = 162/306 (52%)

Query:   143 KTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYG 200
             + +DL P ++ +    + +L  +   F  QSF K +L EGE+ V+ +L+     +Q VY 
Sbjct:   220 RMTDLLPSKVDHEPLLNWKLTTLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYD 279

Query:   201 LVDKLGSLVVRMVFLPFEESSYATFARSAS-GQYPQKSKKIGNSLAEA-----LKLVLLI 254
             +++ LGS+V R +FLP EES Y  FA+    G+  Q  K+   S+A       LKLVLLI
Sbjct:   280 IINNLGSMVARFLFLPIEESFYVFFAKVLERGRDVQHQKQEEVSMAAEVLECLLKLVLLI 339

Query:   255 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 314
             GL+   FG +YS+  + +  G+  S+G     LR Y  YV++LA+NG +E F+ A  +++
Sbjct:   340 GLIITVFGYAYSHLALDIYGGELLSNGAGPALLRCYSCYVLLLAINGVTECFVFAAMSKE 399

Query:   315 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXX 374
             ++ R N  +L  S  +++++  L    G VG ILAN  NM LRI +S ++I+ YF     
Sbjct:   400 EVDRYNLVMLGLSASFLLLSYWLTWMFGGVGFILANCCNMALRITHSIVYIRQYFLQSEH 459

Query:   375 XXXXXXLP-SGWPILL-VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYH 432
                    P S   + L VS VIT FSE +F      W   L H +VG  C     I ++ 
Sbjct:   460 RPLWGLRPHSAVLVALGVSAVITAFSESVFCC-DGGWLLRLFHVAVGAVCLLTVVITVFL 518

Query:   433 RERSFI 438
              E   +
Sbjct:   519 TETRLV 524

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

FB|FBgn0027564 CG3149 [Drosophila melanogaster (taxid:7227)]

 Score = 327 (120.2 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
 Identities = 96/296 (32%), Positives = 150/296 (50%)

Query:   154 NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVL-VWLDTPYN-QAVYGLVDKLGSLVVR 211
             N   ++++L  +   F  Q   K +L EGEK V+ V     +  QA Y +V+ LGS+  R
Sbjct:   257 NGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMSVSPVLSFGEQATYDVVNNLGSMAAR 316

Query:   212 MVFLPFEESSYATFARSAS-----GQYPQKSKKIGNSLAEALKL-VLLIGLVFMAFGPSY 265
              +F P E+SSY  F ++ S      + PQ+  +  +S+   L L V  IGL+   FG SY
Sbjct:   317 FIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQASSVLNNLLLGVSSIGLIAFTFGQSY 376

Query:   266 SYSLVRLLYGKK--WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSL 323
             SY ++ LLYG     + G   + L+++CL + +LA+NG SE ++ A  T   + + N  +
Sbjct:   377 SYPVL-LLYGGPDFVAGGLPQSLLQWHCLAIYLLAVNGISEGYMFATNTSRDIDKYNYLM 435

Query:   324 LVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXXXXXXXXLPS 383
              +FSV ++V++ IL    G VG I AN +NM+ RI+YS  +I+H ++          L  
Sbjct:   436 AIFSVSFLVLSYILTGIFGPVGFIFANCINMLSRILYSTYYIRHQYRPLSLDP----LLG 491

Query:   384 GWPILLVSGVITLFSERIFLDRQDFW---ATFLIHFSVGLTC--FCISSIVIYHRE 434
              WP  L     TLF   I      +W   +    H  VG+     C+ S  + HR+
Sbjct:   492 LWPGKLFG--CTLFLAGIVC----YWYQSSDLATHLGVGVLAGLACLLSWALAHRD 541

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|E1BNC6 RFT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 105/309 (33%), Positives = 160/309 (51%)

Query:   143 KTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYG 200
             + +DL P    +    + + A +   F  QSF K +L EGE+ V+ +L+     +Q VY 
Sbjct:   220 RMTDLLPSMTRSRAFVNWEEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYD 279

Query:   201 LVDKLGSLVVRMVFLPFEESSYATFARSASGQYP---QKSKKIGNS---LAEALKLVLLI 254
             +V+ LGSLV R++F P EES Y  FA+    +     QK + +  +   L   LKL LL 
Sbjct:   280 IVNNLGSLVARLLFQPIEESFYIFFAKVLEREKDATLQKQEDVAVAAVVLESLLKLALLT 339

Query:   255 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 314
             GL    FG +YS  ++ +  G   S G     LR YCLYV++LA+NG +E F  A  ++ 
Sbjct:   340 GLTITVFGFAYSQLVLDIYGGAMLSSGSGPVLLRAYCLYVLLLAINGVTECFTFAAMSKA 399

Query:   315 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXX 374
             ++ R N ++L  S  +++++ +L +  GSVG ILAN  NM +RI+ S  FI  Y++    
Sbjct:   400 EVDRYNFTMLALSSSFLMLSYVLTRWCGSVGFILANCFNMGIRIMQSLYFIYRYYRKSPH 459

Query:   375 XXXXXXLPSGWPILL----VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVI 430
                     S  P+LL    +SG IT  SE +FL  +  W   L H +VG  C  ++    
Sbjct:   460 RPLDGLFLS--PVLLGTFALSGGITAVSE-VFLCCERGWLARLAHIAVGALCLGVTLGTA 516

Query:   431 YHRERSFIY 439
             +  E   I+
Sbjct:   517 FLTETKLIH 525

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

SGD|S000000116 RFT1 "Membrane protein required for translocation of Man5GlcNac2-PP-Dol" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 338 (124.0 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 88/285 (30%), Positives = 148/285 (51%)

Query:   171 FQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSAS 230
             FQ   K LL EG+KL++  L T   Q +Y L+   GSL+ R++F P EES     AR  S
Sbjct:   294 FQLCFKHLLTEGDKLIINSLCTVEEQGIYALLSNYGSLLTRLLFAPIEESLRLFLARLLS 353

Query:   231 GQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYY 290
                P+  K     L    +  + + L+ + FGP+ S  L++ L G KWS       +R Y
Sbjct:   354 SHNPKNLKLSIEVLVNLTRFYIYLSLMIIVFGPANSSFLLQFLIGSKWSTTSVLDTIRVY 413

Query:   291 CLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG-SV-GLIL 348
             C Y+  L++NG  EAF  +VAT DQ+ + +  ++ FS I+++ + +LI+    S+ GLIL
Sbjct:   414 CFYIPFLSLNGIFEAFFQSVATGDQILKHSYFMMAFSGIFLLNSWLLIEKLKLSIEGLIL 473

Query:   349 ANSLNMILRIIYSAIFIKHYFQGXXXXXXXXXLPSGWPILLVSGVITLFSERIFLDRQDF 408
             +N +NM+LRI+Y  +F+  + +              +  ++++G      +  F+     
Sbjct:   474 SNIINMVLRILYCGVFLNKFHRELFTDSSFFFNFKDFKTVIIAGSTICLLDWWFIGYVKN 533

Query:   409 WATFLIH--FSVGLTCFCISSIVIYHRE--RSFIYKIIRFRNHKD 449
                F+++  F++GL    ++ I++  R+  +SFI K     N KD
Sbjct:   534 LQQFVVNVLFAMGL----LALILVKERQTIQSFINKRA-VSNSKD 573

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0034202 "glycolipid-translocating activity" evidence=IDA;IMP

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IGI;IMP

GO:0034203 "glycolipid translocation" evidence=IGI;IMP

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2RQ01 RFT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 110/311 (35%), Positives = 164/311 (52%)

Query:   143 KTSDLFPF--RLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAV 198
             + +DL P   R G  +++ +  A +   F  QSF K +L EGE+ ++ +L+     +Q V
Sbjct:   220 RMTDLLPSITRSGAFVNWKE--AKLTWSFFKQSFLKQILTEGERYIMTFLNVLNFGDQGV 277

Query:   199 YGLVDKLGSLVVRMVFLPFEESSYATFARSAS-GQYP--QKSKKIGNSLA--EAL-KLVL 252
             Y +V+ LGSLV R++F P EES Y  FA+    G+    QK + +  + A  E+L KL L
Sbjct:   278 YDIVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLAL 337

Query:   253 LIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVAT 312
             L GL    FG +YS   + +  G   S G     LR YCLYV++LA+NG +E F  A  +
Sbjct:   338 LAGLTITIFGFAYSQLALDIYGGAMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMS 397

Query:   313 EDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGX 372
             ++++ R N ++L  S  ++V++ +L Q  GSVG ILAN  NM +RI  S  FI  Y++  
Sbjct:   398 KEEVDRYNFTMLALSSSFLVLSYLLTQWCGSVGFILANCFNMGIRITQSLCFIHRYYRKS 457

Query:   373 XXXXXXXXLPSGWPILL----VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSI 428
                       S  P LL    +SG IT  SE +FL  +  W   L H +VG  C  ++  
Sbjct:   458 PHRPLAGLYLS--PALLGAFVLSGGITGVSE-VFLCCEQGWLARLAHVAVGAFCLGMTFG 514

Query:   429 VIYHRERSFIY 439
               +  E   I+
Sbjct:   515 TAFLTETKLIH 525

GO:0016021 "integral to membrane" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

UNIPROTKB|Q96AA3 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 107/297 (36%), Positives = 158/297 (53%)

Query:   143 KTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYG 200
             + +DL P    N    + + A +   F  QSF K +L EGE+ V+ +L+     +Q VY 
Sbjct:   220 RITDLLPNITRNGAFINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYD 279

Query:   201 LVDKLGSLVVRMVFLPFEESSYATFARSAS-GQYP--QKSKKIGNSLA--EAL-KLVLLI 254
             +V+ LGSLV R++F P EES Y  FA+    G+    QK + +  + A  E+L KL LL 
Sbjct:   280 IVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLALLA 339

Query:   255 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 314
             GL    FG +YS   + +  G   S G     LR YCLYV++LA+NG +E F  A  +++
Sbjct:   340 GLTITVFGFAYSQLALDIYGGTMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKE 399

Query:   315 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXX 374
             ++ R N  +L  S  ++V++ +L +  GSVG ILAN  NM +RI  S  FI  Y++    
Sbjct:   400 EVDRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPH 459

Query:   375 XXXXXXLPSGWPILL----VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISS 427
                     S  P+LL    +SG +T  SE +FL  +  W   L H +VG   FC+ +
Sbjct:   460 RPLAGLHLS--PVLLGTFALSGGVTAVSE-VFLCCEQGWPARLAHIAVG--AFCLGA 511

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|B5MDE0 RFT1 "Protein RFT1 homolog" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 107/297 (36%), Positives = 158/297 (53%)

Query:   143 KTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY--NQAVYG 200
             + +DL P    N    + + A +   F  QSF K +L EGE+ V+ +L+     +Q VY 
Sbjct:   181 RITDLLPNITRNGAFINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYD 240

Query:   201 LVDKLGSLVVRMVFLPFEESSYATFARSAS-GQYP--QKSKKIGNSLA--EAL-KLVLLI 254
             +V+ LGSLV R++F P EES Y  FA+    G+    QK + +  + A  E+L KL LL 
Sbjct:   241 IVNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLALLA 300

Query:   255 GLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 314
             GL    FG +YS   + +  G   S G     LR YCLYV++LA+NG +E F  A  +++
Sbjct:   301 GLTITVFGFAYSQLALDIYGGTMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKE 360

Query:   315 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGXXX 374
             ++ R N  +L  S  ++V++ +L +  GSVG ILAN  NM +RI  S  FI  Y++    
Sbjct:   361 EVDRYNFVMLALSSSFLVLSYLLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPH 420

Query:   375 XXXXXXLPSGWPILL----VSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISS 427
                     S  P+LL    +SG +T  SE +FL  +  W   L H +VG   FC+ +
Sbjct:   421 RPLAGLHLS--PVLLGTFALSGGVTAVSE-VFLCCEQGWPARLAHIAVG--AFCLGA 472

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.29.62.1 hypothetical protein (474 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	449
cd13130	441	cd13130, MATE_rft1, Rft1-like subfamily of the mul	1e-169
pfam04506	533	pfam04506, Rft-1, Rft protein	9e-57
cd13124	434	cd13124, MATE_SpoVB_like, Stage V sporulation prot	8e-05
COG2244	480	COG2244, RfbX, Membrane protein involved in the ex	0.001

>gnl|CDD|240535 cd13130, MATE_rft1, Rft1-like subfamily of the multidrug and toxic compound extrusion family (MATE)

 Score =  481 bits (1240), Expect = e-169
 Identities = 237/380 (62%), Positives = 276/380 (72%), Gaps = 9/380 (2%)

Query: 1   MRADIKCDG-----ASREENAAKLLKVAWLTLPLGIFITIGACFFVLW-WQGLSYSNPYA 54
           +R +    G         E  AK+LK+AW  +P GI  TI  C  VLW  + LSYS PYA
Sbjct: 62  LRINSSGAGITTESNKSGELQAKVLKIAWAIVPGGIISTILGCLVVLWASESLSYSPPYA 121

Query: 55  QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEME-K 113
           +AI I GFAC+LELL+EPLYILSQNLL  RLR +VET AT  RC T  ILIV     E K
Sbjct: 122 KAILIYGFACILELLSEPLYILSQNLLKFRLRAIVETAATLVRCLTTFILIVLGTGKEPK 181

Query: 114 GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS 173
            +VFAL Q+AY   LF GYW YFL     K S LFP R  N+M +DK    MC LFT QS
Sbjct: 182 VLVFALGQLAYGVCLFFGYWYYFLQCFVSKKSSLFPLRNSNLMFFDKPTLRMCGLFTIQS 241

Query: 174 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQY 233
           F K LL EG+K+VLVW DTPYNQ VY LVD  GSLVVR+VFLPFEESSY TFAR AS + 
Sbjct: 242 FFKHLLTEGDKIVLVWFDTPYNQGVYALVDNYGSLVVRIVFLPFEESSYTTFARLASEKN 301

Query: 234 PQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLY 293
           P+  KK+GNSL EALKL   +GLV +AFGPSYSYSL+RLLYG++WSDGEA  AL  YCLY
Sbjct: 302 PKALKKLGNSLTEALKLYSYVGLVAIAFGPSYSYSLLRLLYGERWSDGEAPDALGVYCLY 361

Query: 294 VVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANS 351
           +  LA+NGTSEAFLH+VATE+QL+R N  LLVFSVIY+++NV+LI+  S G+VGLILAN 
Sbjct: 362 IPFLALNGTSEAFLHSVATEEQLQRQNVWLLVFSVIYLILNVLLIRWFSLGAVGLILANI 421

Query: 352 LNMILRIIYSAIFIKHYFQG 371
           LNM+LRI YS +FIKHYF+G
Sbjct: 422 LNMLLRIGYSLVFIKHYFKG 441

This eukaryotic family may function as a transporter, shuttling phospholipids, lipopolysaccharides or oligosaccharides from cytoplasmic to the lumenal side of the endoplasmic reticulum. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. Length = 441

>gnl|CDD|218119 pfam04506, Rft-1, Rft protein

 Score =  195 bits (498), Expect = 9e-57
 Identities = 136/445 (30%), Positives = 205/445 (46%), Gaps = 36/445 (8%)

Query: 19  LLKVAWLTLPLGIFITIGACFFVLWWQGLSYSN---PYAQ-AIFINGFACVLELLAEPLY 74
            +  AW++    I  ++              S    P A+  IFI+  +  +ELL EP +
Sbjct: 99  YIWYAWISTVDSISWSV--------LLFFPISAIIEPIAEPFIFISLVSEFVELLLEPHF 150

Query: 75  ILSQNLLLLRLRLVVETVATFSRCFTMCILIVK-QYEMEKGIV---FALSQVA-YAASLF 129
           I+ Q +L+   R+ VE+ A          L V  QY  +K I    FAL  +A    +  
Sbjct: 151 IVGQGMLICVKRIFVESGAFMFPGIYHLELFVYAQYIRKKAIAYLLFALGALAIKITNKS 210

Query: 130 LGYWGYFLLFGAFKTSDLFP--FRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVL 187
           +     F  F     SD  P          +D+   +       QS  K LL EG+K V+
Sbjct: 211 IYELEQFSPF-----SDFLPKVSENKKSYFFDRDSLHAVFSMFSQSILKQLLTEGDKYVM 265

Query: 188 VW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASG------QYPQKSKK 239
            +  L +   QAVY LV   GSL+ R +F P EESS A FA++ S       +     K 
Sbjct: 266 TFTELLSLKEQAVYDLVSNYGSLLARTIFRPIEESSNAYFAQTLSKENKKFNKNTDNHKD 325

Query: 240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 299
             + L+  L +V  IGLV + FG  YS  ++ L  G KWS+   ++ L +YC Y+  LA+
Sbjct: 326 AVDVLSNLLHVVSYIGLVAITFGIPYSPVVLLLYGGSKWSENGGASLLSWYCGYIPFLAI 385

Query: 300 NGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRII 359
           NG +E F  A AT  Q+ +    +  FSVI+++++ +L    GS G ILAN +NM LRI+
Sbjct: 386 NGITEGFAMASATSRQIFKHGKFMFAFSVIFLIISYVLCVYLGSAGFILANIINMSLRIL 445

Query: 360 YSAIFIKHYFQG-SSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSV 418
           Y+  FI+HY++  S  FS           L VS + TL +           + FL+H  +
Sbjct: 446 YNWRFIRHYYRDLSLDFSLVLPFGQTKIFLGVSLLATLVT-YWLFSTVPGLSYFLVHVLI 504

Query: 419 GLTCFCISSIVIYHRERSFIYKIIR 443
           G  C     I +  R+   ++ +I 
Sbjct: 505 GAVCLI--LIALDTRQHDSVFTVIV 527

Length = 533

>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins

 Score = 44.4 bits (106), Expect = 8e-05
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 238 KKIGNSLAEALKLVLLIGL---VFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV 294
           K++   + +AL+L LLIGL   V +A     +  +  LL+G    D E    L+     +
Sbjct: 308 KELRRRINQALRLTLLIGLPAAVGLAV---LAEPINTLLFG----DSEGGLILQILAPSI 360

Query: 295 VVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNM 354
           + L++   + A L  +    ++K    +LL+  ++ IV+N +LI   G  G  +A  +  
Sbjct: 361 LFLSLQQVTAAILQGL---GKVKIPVINLLIGLLVKIVLNYVLIPIFGIYGAAIATVIGF 417

Query: 355 ILRIIYSAIFIKHYFQ 370
           ++  + +   +K    
Sbjct: 418 LVAALLNLRALKKLLG 433

The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 434

>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 57/382 (14%), Positives = 133/382 (34%), Gaps = 21/382 (5%)

Query: 12  REENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAE 71
           RE+    LL +  + L L + + +     ++ +         A  + I   A +L  L+ 
Sbjct: 75  REKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPIDPVLALLLRILSLALLLLPLSS 134

Query: 72  PLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG 131
            L  L Q         +       S      +  +    +   +   +     +  + L 
Sbjct: 135 VLRGLFQGFGRFGPLALSIVS---SIFLLAAVFALLFAALGLAVWALVLGAVVSLLVLLI 191

Query: 132 YWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD 191
             G                 L  ++ +              S    L    + L+L    
Sbjct: 192 LLGKKKRGLKRPILRFSLALLKELLRFGL-------PLLLSSLLNFLFTNIDTLLLGLFL 244

Query: 192 TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLV 251
            P    +Y    +L SL++ +V       +   F   +        K +   L ++LKL+
Sbjct: 245 GPAQVGIYSAAQRLVSLLL-IVASAL---NRVLFPALSRAYAEGDRKALKKLLRQSLKLL 300

Query: 252 LLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVA 311
           LLI +  +      +  ++ LL+G+K++   A+  L+   L  + L++   + + L A+ 
Sbjct: 301 LLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALG 358

Query: 312 TEDQLKRSNDSLLVFSVIYIVMNVILIQSAG--SVGLILANSLNMILRIIYSAIFIKHYF 369
            +  L   +   L+ +++ +++N++LI   G     +  A+ + + L + Y         
Sbjct: 359 KQRLLLLIS---LISALLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVRT 415

Query: 370 QGSSSFSFRSSLPSGWPILLVS 391
           + S     + +  +   + ++ 
Sbjct: 416 KFSYFLLLKLAALALLLLAILG 437

Length = 480

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	449
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	100.0
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	100.0
PRK10459	492	colanic acid exporter; Provisional	99.98
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.9
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.88
COG2244	480	RfbX Membrane protein involved in the export of O-	99.79
PRK15099	416	O-antigen translocase; Provisional	99.78
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.69
PRK01766	456	multidrug efflux protein; Reviewed	99.35
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.29
PRK00187	464	multidrug efflux protein NorA; Provisional	99.21
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	99.16
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.16
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.16
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.14
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.1
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	98.93
PRK10189	478	MATE family multidrug exporter; Provisional	98.92
PRK01766	456	multidrug efflux protein; Reviewed	98.68
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.63
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	98.59
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	98.5
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	98.35
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	98.34
TIGR01695	502	mviN integral membrane protein MviN. This model re	98.34
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.29
PRK10189	478	MATE family multidrug exporter; Provisional	98.25
PRK00187	464	multidrug efflux protein NorA; Provisional	98.23
PRK15099	416	O-antigen translocase; Provisional	97.91
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	97.8
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	97.55
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.54
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.34
PRK10459	492	colanic acid exporter; Provisional	97.26
COG0728	518	MviN Uncharacterized membrane protein, putative vi	95.87
COG2244	480	RfbX Membrane protein involved in the export of O-	95.49
KOG1347	473	consensus Uncharacterized membrane protein, predic	85.1

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.7e-82  Score=629.27  Aligned_cols=434  Identities=40%  Similarity=0.622  Sum_probs=381.6

Q ss_pred             ccccccCCcCchhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHhhccc----CCchhHHHHHHHHHHHHHHHhhhHHHHHH
Q 013111            2 RADIKCDGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLS----YSNPYAQAIFINGFACVLELLAEPLYILS   77 (449)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~n~~wl~i~~g~~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~ls~iie~l~ep~~~~~   77 (449)
                      |-+-.|+++..+++|.|..|+.|++.|+|.++++.++++|+++....    +.++|++++.++++|+++|+++||.+.+.
T Consensus        67 r~A~l~~gs~~~d~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~  146 (530)
T KOG2864|consen   67 RLAELRIGSEPADTWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVS  146 (530)
T ss_pred             HHHhccCCCCCCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHH
Confidence            44556778877779999999999999999999999998887775433    56678999999999999999999999999


Q ss_pred             HhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHhc-------cccCCCCCc
Q 013111           78 QNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFL-GYWGYFLLFG-------AFKTSDLFP  149 (449)
Q Consensus        78 q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~-~y~~~~~~~~-------~~~~~~~~p  149 (449)
                      |..+.++.|+.+|+.++++||++..+..+..++++++.+|++||++|++++++ .||.|+..++       ..+.++++|
T Consensus       147 Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllp  226 (530)
T KOG2864|consen  147 QCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLP  226 (530)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhcc
Confidence            99999999999999999999999988888888889999999999999999998 5577777766       335668899


Q ss_pred             ccccC--cccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhcc--CccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHH
Q 013111          150 FRLGN--MMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLD--TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATF  225 (449)
Q Consensus       150 ~~~~~--~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~--s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~F  225 (449)
                      +.+++  ...||+|+.+...+++.|+++||++|||||++|+...  +..|||+|+++|||||+++|.+|+||||++|.+|
T Consensus       227 k~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~F  306 (530)
T KOG2864|consen  227 KVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYF  306 (530)
T ss_pred             CCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHH
Confidence            98876  6679999999999999999999999999999999665  6779999999999999999999999999999999


Q ss_pred             HHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHH
Q 013111          226 ARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEA  305 (449)
Q Consensus       226 s~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~ea  305 (449)
                      +|..++++++|.+++.+++..++|++.++|+++++|||+||++++.++.|+||++++++.+||+||.|+|++|+||++||
T Consensus       307 A~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEa  386 (530)
T KOG2864|consen  307 ARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEA  386 (530)
T ss_pred             HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHH
Confidence            99999988888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCCchH
Q 013111          306 FLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGW  385 (449)
Q Consensus       306 f~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~~~~~~~l~~~lp~~~  385 (449)
                      |.+|+|+++|+.|+|+.|.++|++|++.+|++++++|..|+|+|||+||.+||.||+++|++++++....+ ...+|...
T Consensus       387 F~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~ld~-~~~l~~~~  465 (530)
T KOG2864|consen  387 FAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDLSLDR-SLFLPFGP  465 (530)
T ss_pred             HHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCh-hhccCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999997743322 12233222


Q ss_pred             H-HHHHHHHHHHHHhHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 013111          386 P-ILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKII  442 (449)
Q Consensus       386 ~-~~~~~~~i~~~s~~~~~~~~~~~~~l~~~i~~G~~~~~~~~~~~~~~e~~~l~~~~  442 (449)
                      + ....++     +.. ++....+...+..|+.+|++|.++++..++..|+++.+.+-
T Consensus       466 ~~~~~~~~-----~s~-l~~~~~~~s~l~~hi~igvvc~la~l~~~al~~~~~~~~~~  517 (530)
T KOG2864|consen  466 TLSIIFAG-----SSL-LCCTTWWLSYLAAHIAIGVVCLLATLGSTALILVVFIVILD  517 (530)
T ss_pred             hHHHHHHh-----cch-hhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 111211     111 22223344556679999999999999999999999988443

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=100.00  E-value=4.6e-77  Score=628.96  Aligned_cols=437  Identities=38%  Similarity=0.628  Sum_probs=358.3

Q ss_pred             ccccccCCcCc--hhhHHHHHHHHHhHhHHHHHHHHHHHHHHH------------Hhhccc-----CCchh-HHHHHHHH
Q 013111            2 RADIKCDGASR--EENAAKLLKVAWLTLPLGIFITIGACFFVL------------WWQGLS-----YSNPY-AQAIFING   61 (449)
Q Consensus         2 ~~~~~~~~~~~--~~~~~~~~n~~wl~i~~g~~~~~~~~~~~~------------~~~~~~-----~~~~y-~~~~~~~~   61 (449)
                      |.+.+|+++.+  +++|+|..|..|++.|++.+++..++++++            ++....     ..+|| ..++.+++
T Consensus        60 R~A~lR~~~~~~~~~~~~~~~n~~wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~  139 (549)
T PF04506_consen   60 RRACLRQPSSSIDKSNWAQSINLLWLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYG  139 (549)
T ss_pred             HHHHhcCCCcccCcccHHHhhhcccccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHH
Confidence            55666666654  678999999999999999888875544433            111111     13577 67999999


Q ss_pred             HHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhc--cc-----------chHHHHHHHHHHHHHHHH
Q 013111           62 FACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQ--YE-----------MEKGIVFALSQVAYAASL  128 (449)
Q Consensus        62 ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~--~~-----------~~~v~~f~~~ql~~s~~~  128 (449)
                      +++++|+++||+|++.|.+++++.|+++|+.|.++||+++++.+++.  .+           ..++++|+.||++|+++.
T Consensus       140 ~s~~iELlsEP~~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l  219 (549)
T PF04506_consen  140 LSAFIELLSEPLYILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITL  219 (549)
T ss_pred             HHHHHHHhhhHHHHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876443  11           135689999999999999


Q ss_pred             HHHHHHHHHHhccccCCCCCccccc---CcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhh--ccCccchhHHHHHh
Q 013111          129 FLGYWGYFLLFGAFKTSDLFPFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVD  203 (449)
Q Consensus       129 ~~~y~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~--~~s~~~qG~Y~la~  203 (449)
                      +.+|.... ..+..+.++.+|+...   ....||+++++++++++.|+++||+||||||++|+.  +.|++|||+|++++
T Consensus       220 ~~~y~~~~-~~~~~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~  298 (549)
T PF04506_consen  220 FFCYYWMY-FFPFKSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVS  298 (549)
T ss_pred             HhhHHhhc-cCcccchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHh
Confidence            88775432 2333333455665443   356789999999999999999999999999999999  99999999999999


Q ss_pred             hhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchh------hhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCC
Q 013111          204 KLGSLVVRMVFLPFEESSYATFARSASGQYPQK------SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK  277 (449)
Q Consensus       204 nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~------~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~k  277 (449)
                      ||||++||++||||||++|.+|||..+++++++      .++..+++..++|++.++|+++++|||++|+.++++++|+|
T Consensus       299 N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~  378 (549)
T PF04506_consen  299 NYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSR  378 (549)
T ss_pred             hHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhc
Confidence            999999999999999999999999987654333      24566789999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Q 013111          278 WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQS-AGSVGLILANSLNMIL  356 (449)
Q Consensus       278 W~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~-~G~~Gli~an~~nm~~  356 (449)
                      |++++++.+|++||+|+|+||+||++|||++|+++++|++++|++|.++|++|+..+|++.+. +|+.|+|+|||+||.+
T Consensus       379 w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~l  458 (549)
T PF04506_consen  379 WSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSL  458 (549)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999994 9999999999999999


Q ss_pred             HHHHHHHHHHHHhccCcccc-cc-ccCCchHHHHHHHHHHHHHHhHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013111          357 RIIYSAIFIKHYFQGSSSFS-FR-SSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRE  434 (449)
Q Consensus       357 ri~~s~~~i~~~~~~~~~~~-l~-~~lp~~~~~~~~~~~i~~~s~~~~~~~~~~~~~l~~~i~~G~~~~~~~~~~~~~~e  434 (449)
                      ||.||.+||++||++....+ .. ...|.. ..+ .+++.....+++..+..+.+.++..|+.+|++|+++    +..+|
T Consensus       459 RI~ys~~fI~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~----i~~~e  532 (549)
T PF04506_consen  459 RIIYSLRFIRRYFRNSGPSFSLFLPLRPSK-IVL-IAAISSAIVTYWFFGCTSFLSQFLIHIAVGVVCLLL----ILLEE  532 (549)
T ss_pred             HHHHHHHHHHHHHhccCCCccccchhccHH-HHH-HHHHHHHHHhheeccccchHHHHHHHHHHHHHHHHH----HHHHH
Confidence            99999999999998743322 22 223332 222 223333444444444456778889999999998665    55667


Q ss_pred             HHHHHHHHHhh
Q 013111          435 RSFIYKIIRFR  445 (449)
Q Consensus       435 ~~~l~~~~~~~  445 (449)
                      |+.++..++++
T Consensus       533 r~~~~~~~~~~  543 (549)
T PF04506_consen  533 RQLLKLFIKKV  543 (549)
T ss_pred             HHHHHHHHHHH
Confidence            77777776554

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PRK10459 colanic acid exporter; Provisional

Probab=99.98  E-value=5.6e-29  Score=262.74  Aligned_cols=404  Identities=15%  Similarity=0.112  Sum_probs=303.9

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHhhcccCCchh-HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHh
Q 013111           19 LLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSR   97 (449)
Q Consensus        19 ~~n~~wl~i~~g~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~   97 (449)
                      .-+..|+++..|+.++++..... .+....+++|. ...+.+.++...+..+.++.....|++++|+..+..|....+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~  155 (492)
T PRK10459         77 LSTLYWLNVGLGIVVFVLVFLLS-PLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAG  155 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44555688888887766554433 22223345555 56778888889999999999999999999999999999999998


Q ss_pred             HHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHH
Q 013111           98 CFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKL  177 (449)
Q Consensus        98 ~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~  177 (449)
                      .+.++.++  ..+ +++++++.++++.+....+.++....  ..+     .|+... +....|++++++.+.+..++..+
T Consensus       156 ~~~~i~~~--~~~-~g~~~l~~~~~~~~~~~~l~~~~~~~--~~~-----~~~~~~-~~~~~k~ll~~~~~~~~~~~~~~  224 (492)
T PRK10459        156 FTFAVVSA--FFW-PGALAAILGYLVNSSVRTLLFGYFGR--KIY-----RPALHF-SLASVKPNLSFGAWQTAERIINY  224 (492)
T ss_pred             HHHHHHHH--HHC-CcHHHHHHHHHHHHHHHHHHHHHHhc--ccC-----Ccccee-cHHHHHHHHhhhHHHHHHHHHHH
Confidence            88887766  334 56788889999877665544432211  111     111110 11123889999999999999999


Q ss_pred             HHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 013111          178 LLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLV  257 (449)
Q Consensus       178 lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~  257 (449)
                      +.++.|++++|++.++++.|.|+.|.++.+++...+..++..+.+|.+|+.+     +|.++.++.+.+.++....+++|
T Consensus       225 ~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~-----~~~~~~~~~~~~~~~~~~~~~~p  299 (492)
T PRK10459        225 LNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQ-----DDTEKLRVGFLKLLSVLGIINFP  299 (492)
T ss_pred             HHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999899999999999975     34456778888999999999999


Q ss_pred             HHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHH
Q 013111          258 FMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVIL  337 (449)
Q Consensus       258 ~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l  337 (449)
                      +..+....+++++.+++||+|.++  .++++++|.+..+.++++.....+++.++++...+.+...   .++.++..+.+
T Consensus       300 ~~~~l~~~a~~ii~ll~g~~~~~a--~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~---~~~~i~~~~~~  374 (492)
T PRK10459        300 LLLGLMVVSNNFVPLVFGEKWNSA--IPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK---TFLFIPAIVIG  374 (492)
T ss_pred             HHHHHHHHhHHHHHHhcChhHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH---HHHHHHHHHHH
Confidence            999999999999999999999884  4899999999999999999999999999999887766332   23333333445


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhccCccccccccCCchHHHHHHHHHHHHHHhHHhccccchHHHHHHHH
Q 013111          338 IQSAGSVGLILANSLNMILRIIYSAIFIKH-YFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHF  416 (449)
Q Consensus       338 ~~~~G~~Gli~an~~nm~~ri~~s~~~i~~-~~~~~~~~~l~~~lp~~~~~~~~~~~i~~~s~~~~~~~~~~~~~l~~~i  416 (449)
                      ...+|..|.+++..+...+....+.++.+| ..+.+....+++..|+...+.+|+. +.+.......+.......+...+
T Consensus       375 ~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~m~~-~~~~~~~~~~~~~~~~~~l~~~~  453 (492)
T PRK10459        375 GQLAGLIGVALGFLLVQIINTILSYFLMIKPVIGLSYRQYILSIWKPFYLSLPMLI-VSYGLGLLLKGHLALGMLLAVQV  453 (492)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHH
Confidence            556799999999998888888888887744 4422222335566676666666643 44444333322223455677888


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 013111          417 SVGLTCFCISSIVIYHRERSFIYKIIRFR  445 (449)
Q Consensus       417 ~~G~~~~~~~~~~~~~~e~~~l~~~~~~~  445 (449)
                      .+|.++|.......+.++.+.+++..+.|
T Consensus       454 ~~g~~~Y~~~~~~~~~~~~~~~~~~~~~~  482 (492)
T PRK10459        454 AAGVLAYLLMIVLSRHALVVEVKRQFCRS  482 (492)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence            99999999998888877766666664444

>TIGR01695 mviN integral membrane protein MviN

Probab=99.90  E-value=1e-19  Score=192.32  Aligned_cols=365  Identities=13%  Similarity=0.049  Sum_probs=271.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHH--HHHHHHHHHHHHHH
Q 013111           55 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFA--LSQVAYAASLFLGY  132 (449)
Q Consensus        55 ~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~--~~ql~~s~~~~~~y  132 (449)
                      .-+++.+.+.++..+.......+|.+.+++.-+..+....+...+ .+.+..  .+ ++.++.+  ++.+...+...+.+
T Consensus       125 ~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~-~~~~~~--~~-~g~~~~~~~~~~~i~~~~~~~~~  200 (502)
T TIGR01695       125 SLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVIL-SLLFFD--WN-YGQYSLALAIGVLIGGVAQLLIQ  200 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHH-HHHHHH--cc-cchHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999887765444 233332  22 4455544  66665555554444


Q ss_pred             HHHHHHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHH
Q 013111          133 WGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRM  212 (449)
Q Consensus       133 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~  212 (449)
                      +.+...+. .+   ..|+... +...-|++++++.+...+++..++.+..|+.+ +...+.++.|.|+.++++-.++...
T Consensus       201 ~~~~~~~~-~~---~~~~~~~-~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~  274 (502)
T TIGR01695       201 LPFLRKAG-FL---LKPRFNF-RDPGLKRFLKLFLPTTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGI  274 (502)
T ss_pred             HHHHHHCC-Cc---ccCcCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHH
Confidence            43332221 10   1111110 11123899999999999999999999999976 8888889999999999999999888


Q ss_pred             HhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccC------CCCCCchHHH
Q 013111          213 VFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK------KWSDGEASTA  286 (449)
Q Consensus       213 lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~------kW~~~~~~~l  286 (449)
                      +..++..+.+|.+++...++|   .++.++.+.+.++....++++...+....+++++.+++|+      +|.+  +.++
T Consensus       275 ~~~~i~~~~~P~~s~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~--~~~~  349 (502)
T TIGR01695       275 FGISLSTVLLPKLSRHASEGN---WNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVM--TATI  349 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHH--HHHH
Confidence            889999999999999986653   3557777888999999999999999999999999999995      3555  4589


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013111          287 LRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIK  366 (449)
Q Consensus       287 L~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~  366 (449)
                      ++++|+..++.+++.+....+++.++++.....+....   ++-++..+.+...+|..|..+|..+...+......++.+
T Consensus       350 l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~---~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~  426 (502)
T TIGR01695       350 LAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV---VLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLN  426 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988777773322   334445555666789999999999999998888888888


Q ss_pred             HHhccCc-cccccccCCchHHHHHHHHHHHHHHhHHhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 013111          367 HYFQGSS-SFSFRSSLPSGWPILLVSGVITLFSERIFLD--RQDFWATFLIHFSVGLTCFCISSIVIYHRERSFI  438 (449)
Q Consensus       367 ~~~~~~~-~~~l~~~lp~~~~~~~~~~~i~~~s~~~~~~--~~~~~~~l~~~i~~G~~~~~~~~~~~~~~e~~~l  438 (449)
                      |.....+ ...+++..|+...+.+|++ +.+.......+  ..+.+..+...+.+|.++|...+...+.+|.+.+
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~as~~m~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~vY~~~~~~~~~~~~~~~  500 (502)
T TIGR01695       427 RRLKGILPFGVLKVLAKLVIASAIIGG-VLYLIVSVSLGGVLVKNLLGLLAIGLIGLLVYFLGLALLKIEELNLL  500 (502)
T ss_pred             HhcCcCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHh
Confidence            7764322 2234566666665666644 33333321000  1345677888899999999999998888776654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.88  E-value=4.9e-19  Score=186.32  Aligned_cols=403  Identities=16%  Similarity=0.121  Sum_probs=267.1

Q ss_pred             CCcCchhhHHHHHHHH-HhHhHHHHHHHHHHHHHHHHhhcccCCchh-HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh
Q 013111            8 DGASREENAAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRL   85 (449)
Q Consensus         8 ~~~~~~~~~~~~~n~~-wl~i~~g~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~   85 (449)
                      +++.|+++.++....+ |+++..|++.++++..+..+.......+|. ...+++++.+..+..+..+....+|.+.++|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  147 (488)
T TIGR02900        68 SAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKP  147 (488)
T ss_pred             HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchH
Confidence            3445555556665554 488888887776654443221111224444 34578888899999999999999999999999


Q ss_pred             HhHHHHHHHHHhHHHHHhHhhh--cccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHH
Q 013111           86 RLVVETVATFSRCFTMCILIVK--QYEM-EKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQL  162 (449)
Q Consensus        86 ~~~~e~~a~~~~~v~~i~la~~--~~~~-~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l  162 (449)
                      .+..+....+++.+..+.+...  ..+. +++.+.+.+.........+..+.+.+.+...+.+..+.++.+.+....|++
T Consensus       148 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l  227 (488)
T TIGR02900       148 PAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDL  227 (488)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHH
Confidence            9999999999987765554321  1121 233333344433332322222222221111100000110001011123889


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhHhhccCc---------cchhHH-HHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCC
Q 013111          163 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARSASGQ  232 (449)
Q Consensus       163 ~~~~~~~~~q~ilk~lltegdklii~~~~s~---------~~qG~Y-~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~  232 (449)
                      ++++.+.+.+++..++.++.|++++++..++         ++.|.| +++.++.+++ ..+...+..+..|.+++..+++
T Consensus       228 ~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~s~~~~~~  306 (488)
T TIGR02900       228 FSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDISEAMAKK  306 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999987532         344555 4667777877 4778899999999999998665


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCC
Q 013111          233 YPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVAT  312 (449)
Q Consensus       233 ~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~  312 (449)
                      |   .++.++.+.+.++....++.|........+++++.+++|  |.+  +.+.++++|+..++.+++.+....+++.++
T Consensus       307 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~--~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  379 (488)
T TIGR02900       307 N---YSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG--RPD--AGNFIRVLAPSFPFLYFSAPLQSILQGLGK  379 (488)
T ss_pred             C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3   344667788899999999999999999999999999885  444  458999999999999999999999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCCchHHHHHH
Q 013111          313 EDQLKRSNDSLLVFSVIYIVMNVILI--QSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLV  390 (449)
Q Consensus       313 ~~~l~~~~~~m~~~si~~l~~~~~l~--~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~~~~~~~l~~~lp~~~~~~~~  390 (449)
                      ++...+.+....++   .++..+.+.  +.+|..|..+|..+.+.++.....++.+|.++.  +.++++..++...++.+
T Consensus       380 ~~~~~~~~~~~~i~---~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  454 (488)
T TIGR02900       380 QKVALRNSLIGAIV---KIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIRI--TIDLSDFLIFALLGILV  454 (488)
T ss_pred             chHHHHHHHHHHHH---HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHH
Confidence            98888777443333   333444454  668999999999999999899888888877633  23355554432222221


Q ss_pred             HHHHHHHHhHHhccccchHHHHHHHHHHHHHHHHH
Q 013111          391 SGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCI  425 (449)
Q Consensus       391 ~~~i~~~s~~~~~~~~~~~~~l~~~i~~G~~~~~~  425 (449)
                       .++........ +..+.+..++..+.+|.++|..
T Consensus       455 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~  487 (488)
T TIGR02900       455 -YLGLSLLKYII-FNPNILINLLLIIILGFSLYIL  487 (488)
T ss_pred             -HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhc
Confidence             12222212111 1123456666677777776653

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.79  E-value=2.9e-15  Score=157.64  Aligned_cols=296  Identities=16%  Similarity=0.154  Sum_probs=218.2

Q ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHH-HHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 013111           53 YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA-TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG  131 (449)
Q Consensus        53 y~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a-~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~  131 (449)
                      +...+....+...+...........|...+++.-+...... .+...+..+..  ...+ .+.|+...+...........
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~  192 (480)
T COG2244         116 LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSIFLLAAVFALLF--AALG-LAVWALVLGAVVSLLVLLIL  192 (480)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH--Hhhh-HHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999888873333 12222222211  1122 45677777777644444333


Q ss_pred             HHHHHHHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHH
Q 013111          132 YWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVR  211 (449)
Q Consensus       132 y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar  211 (449)
                      ++...++.++     ..+. +  ....-|++++++..+...++...+.++.|++++|++.++++.|.|+ +.+.-..+..
T Consensus       193 ~~~~~~~~~~-----~~~~-~--~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~-~a~~i~~~~~  263 (480)
T COG2244         193 LGKKKRGLKR-----PILR-F--SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYS-AAQRLVSLLL  263 (480)
T ss_pred             HHHhhhhccc-----cccC-c--hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecc-cccHHHHHHH
Confidence            3211111110     1111 0  1113388999999999999999999999999999999999999999 6666666677


Q ss_pred             HHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHH
Q 013111          212 MVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYC  291 (449)
Q Consensus       212 ~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc  291 (449)
                      .+..|+..+.+|.+|+..++++   .+++++.+.+.+|....++.|...+....+++++.+++|++|.+.  .++++++|
T Consensus       264 ~~~~~l~~~l~P~~s~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~--~~~l~il~  338 (480)
T COG2244         264 IVASALNRVLFPALSRAYAEGD---RKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASA--APILQLLA  338 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccch--hHHHHHHH
Confidence            7777999999999999987653   344566788899999999999999999999999999999999984  48999999


Q ss_pred             HHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 013111          292 LYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILAN--SLNMILRIIYSAIFIKHY  368 (449)
Q Consensus       292 ~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an--~~nm~~ri~~s~~~i~~~  368 (449)
                      ...++..+++.....+++.++++...+.+..-   .+..+...+.+...+|..|...+.  .+.+..-..+..+...+.
T Consensus       339 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~i~~~~l~~~li~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~  414 (480)
T COG2244         339 LAGLFLSLVSLTSSLLQALGKQRLLLLISLIS---ALLNLILNLLLIPRFGLIGAAIATASVIALALLLFYILRLRLVR  414 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH---HHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998888777422   245556666677777888888777  334444444444444443

>PRK15099 O-antigen translocase; Provisional

Probab=99.78  E-value=1.9e-15  Score=156.44  Aligned_cols=341  Identities=11%  Similarity=-0.008  Sum_probs=225.9

Q ss_pred             cCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhc-ccCCchhHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHh
Q 013111           10 ASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQG-LSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRL   87 (449)
Q Consensus        10 ~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~   87 (449)
                      ..|+++.+++.+++. +++..|+++++++..+.-.... ...+++|...+...+.......+.+.+....+..-+.+..+
T Consensus        70 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~  149 (416)
T PRK15099         70 HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNA  149 (416)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777887775 8888888888766544312111 12233456667777776666666666666666655555555


Q ss_pred             HHHHHHHHHhHHHHHhHhhhcccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHHHHH
Q 013111           88 VVETVATFSRCFTMCILIVKQYEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC  166 (449)
Q Consensus        88 ~~e~~a~~~~~v~~i~la~~~~~~~-~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~  166 (449)
                      .....+.++..+.. ...+...|.+ +.++..++|....+..  .|..+ +++. .+.+.   .+.+.+....|++++++
T Consensus       150 ~~~~~~~~~~i~l~-i~~~~~~Gv~Ga~iat~i~~~i~~~~~--~~~~~-~~~~-~~~~~---~~~~~~~~~~k~ll~~g  221 (416)
T PRK15099        150 LSLIVGSLIGVAAY-YLCYRLGGYEGALLGLALVPALVVLPA--GIMLI-RRGT-IPLSY---LKPSWDNGLAGQLGKFT  221 (416)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHH--HHHHH-Hccc-eehHh---hhccCCHHHHHHHHHHH
Confidence            55544444443331 1112222333 2355555554422111  12221 1111 10000   01111112238899999


Q ss_pred             HHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHH
Q 013111          167 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE  246 (449)
Q Consensus       167 ~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~  246 (449)
                      .+...+++...+.+-.|+.++++..+.++.|.|+.++++.+.+...+..|+.++.+|..++..      |+++.++.+++
T Consensus       222 ~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~------~~~~~~~~~~~  295 (416)
T PRK15099        222 LMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLT------EKRDITREIVK  295 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999952      12335555677


Q ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHH
Q 013111          247 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVF  326 (449)
Q Consensus       247 ~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~  326 (449)
                      ..+....++.+........+|+++.+++||+|.+.  .+++++.++...+...+........+.++++.....+   +..
T Consensus       296 ~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~--~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~---~~~  370 (416)
T PRK15099        296 ALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAM--RDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAE---VSQ  370 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence            77888888777777777899999999999999984  4899998887777666766654455555443332222   122


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111          327 SVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF  369 (449)
Q Consensus       327 si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~  369 (449)
                      .++.++..+.+.+.+|..|..++..+...+....+.....+++
T Consensus       371 ~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~~~~  413 (416)
T PRK15099        371 FTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFLLYR  413 (416)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2455666677888899999999999999888888887766665

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.69  E-value=9.8e-13  Score=138.00  Aligned_cols=346  Identities=17%  Similarity=0.177  Sum_probs=244.5

Q ss_pred             hhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHh---hcccCCchh-H---HHHHHHHHHHHHHHhhhHHHHHHHhhhhhh
Q 013111           13 EENAAKLLKVAW-LTLPLGIFITIGACFFVLWW---QGLSYSNPY-A---QAIFINGFACVLELLAEPLYILSQNLLLLR   84 (449)
Q Consensus        13 ~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~---~~~~~~~~y-~---~~~~~~~ls~iie~l~ep~~~~~q~~l~f~   84 (449)
                      +++-++..|... +...++++++++...++.+.   .+...+++. .   .-.++.....+..+++......+|.+-+|.
T Consensus        49 ~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~  128 (451)
T PF03023_consen   49 EEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFL  128 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            333344444333 55555555665544433222   222232332 2   346889999999999999999999988888


Q ss_pred             hHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHHH
Q 013111           85 LRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLAN  164 (449)
Q Consensus        85 ~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~  164 (449)
                      .-+.......+.-.+ ++.+.....+.+.+.+.++|....++...+.... ..++...+.   .|.....+... |++++
T Consensus       129 ~~~~~~l~~N~~~I~-~~~~~~~~~~~~~i~~la~g~~~g~~~~~l~~l~-~~~~~~~~~---~~~~~~~~~~~-~~~~~  202 (451)
T PF03023_consen  129 IPALSPLLFNLSIIL-SLLLLSNSWGQENIYALAWGVLIGAIIQFLIQLP-YLRRFGFRF---RPKFDWRDPNL-KRFLK  202 (451)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCcc---cccCCCCChhH-HHHHH
Confidence            777766665544332 2222212222123666777777666665443222 222211111   11111111123 77888


Q ss_pred             HHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHH
Q 013111          165 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL  244 (449)
Q Consensus       165 ~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~  244 (449)
                      ........+...|+.+-.|+.+-+.+. ......++-|+.+-++|...+..++..+.||.+||..+++|.   ++.++.+
T Consensus       203 ~~~p~~l~~~~~qi~~lv~~~laS~l~-~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~---~~~~~~~  278 (451)
T PF03023_consen  203 LAIPLLLSSSISQINILVDRALASFLG-EGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW---EEFRKTL  278 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHH
Confidence            888889999999999999999888844 667889999999999999999999999999999998877533   4577778


Q ss_pred             HHHHHHHHHHHHHHHhhcccchHHHHHHHccC-CCCCCc---hHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhh
Q 013111          245 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN  320 (449)
Q Consensus       245 ~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~-kW~~~~---~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~  320 (449)
                      .+.++....+.+|+..+....|+++++++++. +..+.+   ..+++++|+...|+.++|.++.-.+.|.++++...+.+
T Consensus       279 ~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~  358 (451)
T PF03023_consen  279 RKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRIS  358 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHH
Confidence            88999999999999999999999999999953 444332   24799999999999999999999999999998888877


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013111          321 DSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG  371 (449)
Q Consensus       321 ~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~~  371 (449)
                      ....+   +-+..++.+.+.+|..|+++|+.+...+.........+|+.+.
T Consensus       359 ~~~~~---lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~~  406 (451)
T PF03023_consen  359 VISVV---LNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLGL  406 (451)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            54444   4444445678889999999999998888888888888888753

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.35  E-value=2.7e-09  Score=111.89  Aligned_cols=354  Identities=15%  Similarity=0.076  Sum_probs=225.7

Q ss_pred             cCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 013111            7 CDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNL   80 (449)
Q Consensus         7 ~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q~~   80 (449)
                      ..++.+.++-++..+.+. +++.+|+++++++....-+.......||.     ..-+++++.+.....+.......+|-.
T Consensus        78 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~  157 (456)
T PRK01766         78 LNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGL  157 (456)
T ss_pred             HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344555566667776666 77778877666544332122222233442     133577778888888888888888888


Q ss_pred             hhhhhHhHHHHHHHHHhHHHHHhHhhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCccc
Q 013111           81 LLLRLRLVVETVATFSRCFTMCILIVKQ---YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMS  157 (449)
Q Consensus        81 l~f~~~~~~e~~a~~~~~v~~i~la~~~---~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~  157 (449)
                      -+.|.-......+.+++.+....+....   ++ .++.+.+++.........+.+..+..++...+..+......+.+..
T Consensus       158 g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (456)
T PRK01766        158 GKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPE-LGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWA  236 (456)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-cccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHH
Confidence            8888888888888777777665554211   12 2333333443333333322222222221111000001100000111


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhh
Q 013111          158 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  237 (449)
Q Consensus       158 ~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~  237 (449)
                      ..|++++.+.....+.+...+....+..+++++ +.++.+.|++++|+.++.. .+..-+..+.=+.-++...++   |.
T Consensus       237 ~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~-G~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~---~~  311 (456)
T PRK01766        237 VIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPL-GTVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAG---RT  311 (456)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC---CH
Confidence            237899999999999999998889999888886 4577999999999887764 334456666667777777554   33


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHH
Q 013111          238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  317 (449)
Q Consensus       238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~  317 (449)
                      ++.++.....+++...++++........++++.+++..|.-....+.+++.++++..|+.+++....+++++.|+++...
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~  391 (456)
T PRK01766        312 LDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIF  391 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHH
Confidence            55777777788888888888888888889999886543221111134678888889999999999999999999998877


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013111          318 RSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKHY  368 (449)
Q Consensus       318 ~~~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~~s~~~i~~~  368 (449)
                      ..+....  .++.++..|.+..  .+|..|..++..+...++.....+..++.
T Consensus       392 ~~~~~~~--~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~  442 (456)
T PRK01766        392 FITFIAY--WVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL  442 (456)
T ss_pred             HHHHHHH--HHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence            7773221  1223333343332  37899999999888888877666665554

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.29  E-value=3.1e-08  Score=104.09  Aligned_cols=351  Identities=15%  Similarity=0.091  Sum_probs=223.8

Q ss_pred             cCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCch----h-HHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 013111            7 CDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNP----Y-AQAIFINGFACVLELLAEPLYILSQNL   80 (449)
Q Consensus         7 ~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~----y-~~~~~~~~ls~iie~l~ep~~~~~q~~   80 (449)
                      .-|+.++++.++..+.+. +++.+|++.+++.....-........||    . ..-+++++++.....+.......+|..
T Consensus        79 ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~  158 (453)
T PRK09575         79 KRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRND  158 (453)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            345666667677776666 8888888777765544322222222333    2 234688888888888888877777776


Q ss_pred             hhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccc-cCccccc
Q 013111           81 LLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL-GNMMSYD  159 (449)
Q Consensus        81 l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~-~~~~~~~  159 (449)
                      -+-+.-......+.+++.+....+... .+ +++.+-+++.........+.+..+..+. +.+.  .+..+. +.+...-
T Consensus       159 g~~~~~~~~~~~~~~~ni~l~~~li~~-~~-~Gi~Gaa~At~is~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~  233 (453)
T PRK09575        159 ESPNLATGLMVIGALINIVLDYLFIGW-LD-WGLTGAAIATALAQLVVTVLGLGYFFSS-RANI--RLTLKELRFNWSLA  233 (453)
T ss_pred             CChHHHHHHHHHHHHHHHHhhHHHHHh-CC-chhHHHHHHHHHHHHHHHHHHHHHHHCC-Ccee--EEeeccCCcCHHHH
Confidence            666666666766666666666555422 22 4444444443332222222222222211 1100  010000 0011122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111          160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  239 (449)
Q Consensus       160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~  239 (449)
                      |+.++.+.....+.....+-.-.-..+++++.+.++.+.|+++++.-++. -....-+..+.-|.=++....++.   ++
T Consensus       234 ~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~~---~~  309 (453)
T PRK09575        234 PKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQY---DN  309 (453)
T ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCCh---HH
Confidence            56677777777766655555555555666666566799999999988774 445568888888988988866533   55


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCC-CCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013111          240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  318 (449)
Q Consensus       240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~k-W~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~  318 (449)
                      .++.++..+++....+.+........+++++.+...++ -.-+.+.+.+.+.++..|+.+++-+...++++.++++....
T Consensus       310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  389 (453)
T PRK09575        310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALF  389 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            77778888999999888888888889999998765432 11122347899999999999999999999999999987776


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111          319 SNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF  369 (449)
Q Consensus       319 ~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~  369 (449)
                      .+....   .+.++..|++...+|..|.-++..+...++........++..
T Consensus       390 ~~~~~~---~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~~  437 (453)
T PRK09575        390 ISIGNM---LIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWRDV  437 (453)
T ss_pred             HHHHhH---HHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            663322   234455565555579999989888888887777766665544

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.21  E-value=8.7e-08  Score=101.06  Aligned_cols=342  Identities=12%  Similarity=-0.009  Sum_probs=214.7

Q ss_pred             ccCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHHh
Q 013111            6 KCDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQN   79 (449)
Q Consensus         6 ~~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q~   79 (449)
                      |+-|+.+.++-++..+.++ +.+.++++.+++.. ..-........||.     ..-+++++.+...-.+.......+|-
T Consensus        75 q~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~  153 (464)
T PRK00187         75 IRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSA  153 (464)
T ss_pred             HHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777777777777777 77777776655432 22111222333442     12356666666666777777666777


Q ss_pred             hhhhhhHhHHHHHHHHHhHHHHHhHhhhccc--chHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccccc
Q 013111           80 LLLLRLRLVVETVATFSRCFTMCILIVKQYE--MEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLG  153 (449)
Q Consensus        80 ~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~--~~~v----~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~  153 (449)
                      .-+.+.-..+...+.+++.+...++.+..-+  ..|+    ++.++++..    ..+.+..|..+++..+..+......+
T Consensus       154 ~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (464)
T PRK00187        154 LGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNG----MALALALYIRRHPAYAAYPLRKGLSR  229 (464)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHH----HHHHHHHHHHhcchhhhhhhhccccC
Confidence            7677777777777777776666555422111  1333    444444432    22222223332221100000000000


Q ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCC
Q 013111          154 NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQY  233 (449)
Q Consensus       154 ~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~  233 (449)
                      .+...-|++++.+.....+.+........|..+++++.+ ++.+.|++++|+.++..-. ..-+..+.-+.-++...+++
T Consensus       230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~-~alAa~~i~~~i~~l~~~~-~~gi~~a~~~lvgq~~Ga~~  307 (464)
T PRK00187        230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGS-TQLAAHQIALQIVSVAFMV-PVGLSYAVTMRVGQHYGAGR  307 (464)
T ss_pred             CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCC
Confidence            011123789999999999999999999999999999665 7999999999998874444 44777888888888876653


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccC-CCCCCc----hHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013111          234 PQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLH  308 (449)
Q Consensus       234 ~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~-kW~~~~----~~~lL~~yc~yi~~la~Ngi~eaf~~  308 (449)
                      .   ++.++..+..+++...++++........++++++++.++ +-...+    +.++++++|+..|+.++|.+....+.
T Consensus       308 ~---~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lr  384 (464)
T PRK00187        308 L---LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIR  384 (464)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHh
Confidence            3   456666777888888888877777788899999988653 221111    23588888999999999999999999


Q ss_pred             hhCCHHHHHHhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHH
Q 013111          309 AVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRII  359 (449)
Q Consensus       309 a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~  359 (449)
                      +.|+++.....+....  ..+-++..|++..  .+|..|.-++-.+...++..
T Consensus       385 g~G~~~~~~~~~~~~~--~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~  435 (464)
T PRK00187        385 GLKDARTTFLIGLACY--WLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAV  435 (464)
T ss_pred             ccCccHHHHHHHHHHH--HHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHH
Confidence            9999987777763211  1122333333332  25777777766665555543

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=99.16  E-value=9.5e-09  Score=97.98  Aligned_cols=202  Identities=16%  Similarity=0.272  Sum_probs=136.4

Q ss_pred             cCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhh
Q 013111            7 CDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLR   84 (449)
Q Consensus         7 ~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~   84 (449)
                      |+.+.++++..+..+... .....+++..++..... +    ...++. ...+.+.++....+.+.+.....++.+.+++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  121 (251)
T PF13440_consen   47 RSAARDKQDIRSLLRFSLLVSLLLAVILAILAILIA-Y----FFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFR  121 (251)
T ss_pred             HhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            444556666666766665 33333333322222222 1    113443 4567788888899999999999999999999


Q ss_pred             hHhHHHHHHHHHhHHHHHhHhhhcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHH
Q 013111           85 LRLVVETVATFSRCFTMCILIVKQYEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLA  163 (449)
Q Consensus        85 ~~~~~e~~a~~~~~v~~i~la~~~~~~~~-v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~  163 (449)
                      .-...+......+.+..+.+.....+.++ ++++..+++.    ..+..+...+.+++      .+++    ... ++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~------~~~~----~~~-~~~~  186 (251)
T PF13440_consen  122 AYALIDIVRSLLRLLLLVLLLYLGLNLWSILLAFIISALL----ALLISFYLLRRKLR------LSFK----FSW-RRLL  186 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHhccccC------CCch----hhH-HHHH
Confidence            99999999888885555554433222222 2344444443    22222221111100      1111    011 3479


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 013111          164 NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS  228 (449)
Q Consensus       164 ~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~  228 (449)
                      +.+.++..+++...+.+++|+++++.+.++++.|.|+.+.++...+...+.+++.+..+|.+||+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  187 KYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999779999999999999999999999999999999999974

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.16  E-value=2.9e-08  Score=99.54  Aligned_cols=253  Identities=17%  Similarity=0.069  Sum_probs=171.8

Q ss_pred             hHHHHH-HHHHhHhHHHHHHHHHHHHHHHHhhcccC-Cchh----HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhHhH
Q 013111           15 NAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSY-SNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV   88 (449)
Q Consensus        15 ~~~~~~-n~~wl~i~~g~~~~~~~~~~~~~~~~~~~-~~~y----~~~~~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~   88 (449)
                      +-++.. +..+++..+|+++++++....-+...... +++.    ...+++++++.....+.......+|..-+++.-..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (342)
T TIGR00797        67 RLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMY  146 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            334444 44458888888877766544322222222 2222    24578899999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCcccccHHHHHHHHH
Q 013111           89 VETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTL  168 (449)
Q Consensus        89 ~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~  168 (449)
                      .+....++.....+.+.....+.+++.+.+++.+...+...+.+..+..++++.+.. ..+ +.+.+...-|++++++.+
T Consensus       147 ~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~k~~~~~~~P  224 (342)
T TIGR00797       147 ITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLK-WEG-LLKPDWEVLKRLLKLGLP  224 (342)
T ss_pred             HHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-ccc-ccCCCHHHHHHHHHhCch
Confidence            999888887777666543011202344555555554444444333222222111100 000 011011123889999999


Q ss_pred             HHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHH
Q 013111          169 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL  248 (449)
Q Consensus       169 ~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~l  248 (449)
                      ....++...+.++.|+.+++. .+.++.|.|+.+.++.+++ ..+...+..+..|..++...++   |.++.++.+.+.+
T Consensus       225 ~~~~~l~~~~~~~~~~~i~~~-~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~  299 (342)
T TIGR00797       225 IAFRVILESLSFALLALLVAR-LGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAG---DPKRAKEVARVAL  299 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Confidence            999999999999999988876 5788999999999998865 4666689999999999987554   3355677788899


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHc
Q 013111          249 KLVLLIGLVFMAFGPSYSYSLVRLLY  274 (449)
Q Consensus       249 r~~~~l~~~~~~~g~~~s~~ll~lll  274 (449)
                      +....+++++..+....++++++++.
T Consensus       300 ~~~~~~~~~~~~~l~~~~~~i~~~~~  325 (342)
T TIGR00797       300 KLSLLLGLVLAIILILFREFIARLFT  325 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999988888899999887764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.16  E-value=6.8e-06  Score=86.88  Aligned_cols=299  Identities=15%  Similarity=0.050  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchH-HHHHHHHHHHHHHHHHHHHHHHH
Q 013111           58 FINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEK-GIVFALSQVAYAASLFLGYWGYF  136 (449)
Q Consensus        58 ~~~~ls~iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~-v~~f~~~ql~~s~~~~~~y~~~~  136 (449)
                      ++..--.++-++..-....++..-+|..-+.....-.+.-.+..+   +..+..++ .++.++|-++.++...+..+...
T Consensus       137 ~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l---~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l  213 (518)
T COG0728         137 RILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLAL---FLGPYFDPPLLALAWGVLIGGLLQLLVQLPAL  213 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHH---HhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666667776777777766666555544444433331111   12232234 56778888887777766544332


Q ss_pred             HHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhh
Q 013111          137 LLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLP  216 (449)
Q Consensus       137 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~P  216 (449)
                      +..+ ..   ..|+.+.++... |++...........-..|++.-.|..+-+... ....-.+.-++.+-.+|--.+---
T Consensus       214 ~~~g-~~---~~p~~~~~~~~l-k~~~~~~~p~~l~~sisQi~lli~~~iAS~l~-~Gsis~l~YA~rl~qlPlGifgva  287 (518)
T COG0728         214 RKAG-LL---IKPRFGFKDPGL-KRFLKLMLPALLGVSISQINLLIDTAIASFLA-EGSVSWLYYADRLYQLPLGIFGVA  287 (518)
T ss_pred             HHcc-cc---cCCCCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhhHHHHHHH
Confidence            2221 11   123322211223 56666677777778888888888877766654 334567778899999999999999


Q ss_pred             hhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccC-CCCCCch---HHHHHHHHH
Q 013111          217 FEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGEA---STALRYYCL  292 (449)
Q Consensus       217 Iee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~-kW~~~~~---~~lL~~yc~  292 (449)
                      +..+.+|.+||..+++|.+   +.++.+..-+|+..++.+|...+....|+|++++++.. +..+.++   ..++..|.+
T Consensus       288 i~tvllP~lSr~~~~~~~~---~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~  364 (518)
T COG0728         288 LSTVLLPSLSRHAANGDWP---EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSL  364 (518)
T ss_pred             HHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH
Confidence            9999999999998776443   35566778999999999999999999999999999986 4444322   368999999


Q ss_pred             HHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013111          293 YVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG  371 (449)
Q Consensus       293 yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~~  371 (449)
                      -.|..+++.+.-..+.|..+++.=.+.+..-.+..   +...+.+...+|..|++++-.++-.+.....++..++....
T Consensus       365 gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n---~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~  440 (518)
T COG0728         365 GLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVN---ILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRLVY  440 (518)
T ss_pred             hhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999988777774333333   33334455557888877777666655566666666666543

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.14  E-value=7.8e-09  Score=99.36  Aligned_cols=164  Identities=13%  Similarity=0.118  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHH-HHHHhhhHHHHHHHhhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 013111           54 AQAIFINGFAC-VLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGY  132 (449)
Q Consensus        54 ~~~~~~~~ls~-iie~l~ep~~~~~q~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y  132 (449)
                      .....++++.. ++...........|...+++.....+....+.+.+..+......   +.++.+..++....+...+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  184 (273)
T PF01943_consen  108 SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFLG---SSLWGFLLGLVISSLVSLIIS  184 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333 46777777777788887888888888888877777665554322   225566666666555544433


Q ss_pred             HHHHHHhccccCCCCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHH
Q 013111          133 WGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRM  212 (449)
Q Consensus       133 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~  212 (449)
                      +.+.+....       +.+...+....|++++++.+++..++...+.++.|+++++++.++++.|.|+.+.++++.+...
T Consensus       185 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~  257 (273)
T PF01943_consen  185 LFYLRRKLR-------PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFL  257 (273)
T ss_pred             HHHHHHHHc-------ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence            333221100       1111111124489999999999999999999999999999999999999999999999987666


Q ss_pred             HhhhhhhhhHHHHHHH
Q 013111          213 VFLPFEESSYATFARS  228 (449)
Q Consensus       213 lf~PIee~~~~~Fs~~  228 (449)
                      .. ++..+.+|.++|+
T Consensus       258 ~~-~~~~~~~P~~s~l  272 (273)
T PF01943_consen  258 LS-SISTVLFPRLSRL  272 (273)
T ss_pred             HH-HHHHHHHHHHHHh
Confidence            55 7777999999986

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.10  E-value=6.4e-07  Score=94.29  Aligned_cols=355  Identities=17%  Similarity=0.095  Sum_probs=242.6

Q ss_pred             ccCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCc----hh-HHHHHHHHHHHHHHHhhhHHHHHHHh
Q 013111            6 KCDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSN----PY-AQAIFINGFACVLELLAEPLYILSQN   79 (449)
Q Consensus         6 ~~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~----~y-~~~~~~~~ls~iie~l~ep~~~~~q~   79 (449)
                      |+-|+.|.++-+++.+.+. +++.+|++++++.....-........+    ++ ..=+++..++...-.+.+......+-
T Consensus        82 q~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~  161 (455)
T COG0534          82 QAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRG  161 (455)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3446777777777777666 898898777776544331211222222    23 23468889999999999999999999


Q ss_pred             hhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccc-cCcccc
Q 013111           80 LLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL-GNMMSY  158 (449)
Q Consensus        80 ~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~-~~~~~~  158 (449)
                      .-|.|.-..+...+.++..+....+.+..-+.+|+.+-+++....-...++.++.+...+.+.  ...+..+. +.+...
T Consensus       162 ~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  239 (455)
T COG0534         162 LGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRL--LSLFKKKLLKPDRKL  239 (455)
T ss_pred             cCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchh--hhhhhhhccCCCHHH
Confidence            999999999999999999999888775432213443444444333323333333333222110  00110100 101123


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhh
Q 013111          159 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  238 (449)
Q Consensus       159 ~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~  238 (449)
                      -|++++.+.....+++....-...-..+++++. .+....|+++.++.++..-..+ -+..+.-+.-.+....++   .+
T Consensus       240 ~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~~~~~-gi~~a~~~lvG~~~Ga~~---~~  314 (455)
T COG0534         240 LKEILRLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASFIFMPPF-GIAQAVTILVGQNLGAGN---YK  314 (455)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCC---HH
Confidence            478899999999999888888888888888887 6678888888888877655544 677777777777775543   35


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013111          239 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  318 (449)
Q Consensus       239 ~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~  318 (449)
                      +.++..+..++....++..........++++..+...+.-....+..++.+.+.+.|+.++|.+....+++.++++.-.-
T Consensus       315 ~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~  394 (455)
T COG0534         315 RARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFI  394 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            56777777888888888888888889999999987766211112346888888999999999999999999999976665


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111          319 SNDSLLVFSVIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHYF  369 (449)
Q Consensus       319 ~~~~m~~~si~~l~~~~~l~~~-~G~~Gli~an~~nm~~ri~~s~~~i~~~~  369 (449)
                      .+..  ....+.++..|++... +|..|+-++-.++..+|........++.-
T Consensus       395 ~~~~--~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~  444 (455)
T COG0534         395 ISLL--SYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRGR  444 (455)
T ss_pred             HHHH--HHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5511  1112335555556655 89999999999999999888887776654

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=98.93  E-value=9.4e-06  Score=85.12  Aligned_cols=348  Identities=12%  Similarity=0.040  Sum_probs=201.0

Q ss_pred             ccCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhh-cccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHH
Q 013111            6 KCDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQ-GLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQ   78 (449)
Q Consensus         6 ~~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~-~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q   78 (449)
                      |+-|+.|.++-++....+. +++..|+++++....+. .+. .....||.     ..-+++++++...-.+.......+|
T Consensus        75 q~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr  153 (441)
T PRK10367         75 QAFGAKNPQALARALVQPLLLALGAGALIALLRTPLI-DLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLL  153 (441)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666666665444 77777776664432221 111 11122332     1335777777788888888878888


Q ss_pred             hhhhhhhHhHHHHHHHHHhHHHHHhHhhhcccchHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccC
Q 013111           79 NLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGN  154 (449)
Q Consensus        79 ~~l~f~~~~~~e~~a~~~~~v~~i~la~~~~~~~~v----~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~  154 (449)
                      -.-+-|.-..+...+.++..+....+.... + +|+    ++..++|....+...  ++.+  ..+..+..+.-+.++..
T Consensus       154 ~~G~~~~~~~~~ii~~~vni~l~~~lI~~~-~-lGv~Gaa~At~is~~~~~i~~~--~~~~--~~~~~~~~~~~~~~~~~  227 (441)
T PRK10367        154 GVQYARAPVILLVVGNILNIVLDLWLVMGL-H-MNVQGAALATVIAEYATLLIGL--LMVR--KVLKLRGISLEMLKTAW  227 (441)
T ss_pred             HcccchHHHHHHHHHHHHHHHHHHHHHHHc-C-CccHHHHHHHHHHHHHHHHHHH--HHHH--HHHhhccccHHHhhhhh
Confidence            877788777777777777777666554322 2 344    455555655322221  2221  11111100000011100


Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCc
Q 013111          155 MMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYP  234 (449)
Q Consensus       155 ~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~  234 (449)
                      ...+ |++++.+.....+.+...+-...-..+++++. .+..+.|++++|+.++..-. ..-+.++.-|.=++....++.
T Consensus       228 ~~~~-~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G-~~alAa~~I~~~i~~~~~~~-~~gl~~a~~~lvg~~~Ga~~~  304 (441)
T PRK10367        228 RGNF-RRLLALNRDIMLRSLLLQLCFGAITVLGARLG-SDIIAVNAVLMTLLTFTAYA-LDGFAYAVEAHSGQAYGARDG  304 (441)
T ss_pred             HHHH-HHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHcCCCH
Confidence            0012 67788888888888888777777778888765 46899999999988776533 336778888888888766544


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHH
Q 013111          235 QKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED  314 (449)
Q Consensus       235 ~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~  314 (449)
                         ++.++..+..+++...++.+.........++++.+.-.|.-.-..+..++++.+...|..+++-...+.+.+..+..
T Consensus       305 ---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~  381 (441)
T PRK10367        305 ---SQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA  381 (441)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH
Confidence               44666667678888877777776667788888887642211111123566666654332224444455567777653


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013111          315 QLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQ  370 (449)
Q Consensus       315 ~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~~~~~  370 (449)
                      + -|..-.+..++...   .+.....+|..|+-++-.+...+|........++..+
T Consensus       382 d-t~~~~~~~~~~~~~---~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~~~  433 (441)
T PRK10367        382 E-MRNSMAVAAAGFAL---TLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHWR  433 (441)
T ss_pred             H-HHHHHHHHHHHHHH---HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1 12222222222111   1112234688998888888888887766554444443

>PRK10189 MATE family multidrug exporter; Provisional

Probab=98.92  E-value=1.1e-05  Score=85.51  Aligned_cols=342  Identities=10%  Similarity=-0.048  Sum_probs=199.1

Q ss_pred             cCCcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccC--Cchh-----HHHHHHHHHHHHHHHhhhHHHHHHH
Q 013111            7 CDGASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSY--SNPY-----AQAIFINGFACVLELLAEPLYILSQ   78 (449)
Q Consensus         7 ~~~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~--~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q   78 (449)
                      .-|+.+.++.++..+.+. +++.++++++++.....-.......  .||.     ..-+++..++.....+.......+|
T Consensus        95 ~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr  174 (478)
T PRK10189         95 SLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALR  174 (478)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677777766555 7777777776654333211111221  2332     1335667777777777777777777


Q ss_pred             hhhhhhhHhHHHHHHHHHhHHHHHhHhhhc---ccchHH----HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccc
Q 013111           79 NLLLLRLRLVVETVATFSRCFTMCILIVKQ---YEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFR  151 (449)
Q Consensus        79 ~~l~f~~~~~~e~~a~~~~~v~~i~la~~~---~~~~~v----~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~  151 (449)
                      -.-|-+.-..+...+.++..+....+.+..   ++ +|+    ++..++|....+..  .|+.+.+..+..+    ++.+
T Consensus       175 ~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~-lGv~Gaa~At~is~~~~~~~~--~~~~~~~~~~~~~----~~~~  247 (478)
T PRK10189        175 GAGNTKIPLLINGGMNILNIIISSILIYGLFSWQG-LGFVGAGLGLTISRYIGAVAI--IWVLMIGFNPALR----ISLK  247 (478)
T ss_pred             hcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCc-cchHHHHHHHHHHHHHHHHHH--HHHHHhccCccce----eeec
Confidence            777777777777777776666666554322   22 344    45555555432222  2222111010100    1100


Q ss_pred             c---cCcccccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 013111          152 L---GNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS  228 (449)
Q Consensus       152 ~---~~~~~~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~  228 (449)
                      .   +.+....|++++.+.....+.+.-.+..-.-..+++++ +.+....|+++.|+.++..- ...-+.++.-+.=++.
T Consensus       248 ~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~-G~~~~Aa~~I~~~i~~~~~~-~~~gi~~A~~~lvg~~  325 (478)
T PRK10189        248 SYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGM-GTSVIAGNFIAFSIAALINL-PGNALGSASTIITGTR  325 (478)
T ss_pred             cccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            0   00111225677777665554443333322223334444 34678888888888877543 3446778888888887


Q ss_pred             hcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013111          229 ASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLH  308 (449)
Q Consensus       229 ~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~  308 (449)
                      ...++.   ++.++..+..++....++..+..+....++++..+...|.-.-..+...+.+.|++.|+.++|.+....+.
T Consensus       326 ~Ga~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lr  402 (478)
T PRK10189        326 LGKGQI---AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLK  402 (478)
T ss_pred             hCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            765433   45666666677777777777666667788888887644321111233688888999999999999999999


Q ss_pred             hhCCHHHHHHhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHH
Q 013111          309 AVATEDQLKRSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSA  362 (449)
Q Consensus       309 a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~~s~  362 (449)
                      +.++++.....+..-  ..++.++..|++..  .+|..|+-++-.+...+|.....
T Consensus       403 g~G~t~~~~~i~~~~--~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~  456 (478)
T PRK10189        403 GARDARYAMWVSMLG--MWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFY  456 (478)
T ss_pred             cCCCchHHHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999998777666211  11222333333322  36888988888888877765433

>PRK01766 multidrug efflux protein; Reviewed

Probab=98.68  E-value=1.7e-06  Score=90.76  Aligned_cols=198  Identities=12%  Similarity=0.078  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111          160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  239 (449)
Q Consensus       160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~  239 (449)
                      |++++++.....+++...+..-.|..+++++ +.++++.++.++++-.. .-.+..-+..+.-|.-|+...+++.   ++
T Consensus        12 ~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~-g~~~laa~~~~~~~~~~-~~~~~~g~~~a~~~~vs~~~g~~~~---~~   86 (456)
T PRK01766         12 RQLLALALPILLAQVAQTAMGFVDTVMAGGV-SATDLAAVAIGTSIWLP-VILFGHGLLLALTPIVAQLNGAGRR---ER   86 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCh---HH
Confidence            7899999999999999999999999999996 55678888888877443 3344556788888999998766533   44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013111          240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS  319 (449)
Q Consensus       240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~  319 (449)
                      .++.+...++....++++..++....+++++.++..++-..+.+.+.++++++..|+.+++.+...++++.++++.....
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  166 (456)
T PRK01766         87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI  166 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence            66677778888888888888888888899988765443221223468999999999999999999999999999888877


Q ss_pred             hhHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013111          320 NDSLLVFSVIYIVMNVILI------QSAGSVGLILANSLNMILRIIYSAIFI  365 (449)
Q Consensus       320 ~~~m~~~si~~l~~~~~l~------~~~G~~Gli~an~~nm~~ri~~s~~~i  365 (449)
                      +....+.   -+...+.++      +.+|..|..++..+...+.......++
T Consensus       167 ~~i~~iv---ni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~  215 (456)
T PRK01766        167 GFLGLLI---NIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYI  215 (456)
T ss_pred             HHHHHHH---HHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            7433333   333333343      235777887777666555544444444

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.63  E-value=4e-06  Score=84.02  Aligned_cols=191  Identities=21%  Similarity=0.211  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHH
Q 013111          169 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL  248 (449)
Q Consensus       169 ~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~l  248 (449)
                      .+..++..++..-.|+++++++. .++.|.|+.++++.. +.+.+...+..+..|..++...++|.   ++.++..+..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~---~~~~~~~~~~~   76 (342)
T TIGR00797         2 AILANILQPLLGLVDTAFVGHLG-PVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNY---QRLGRQAQQSL   76 (342)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCCh---HHHHHHHHHHH
Confidence            35678889999999999999965 778999999988755 66777889999999999998765533   44566677788


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHH
Q 013111          249 KLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSV  328 (449)
Q Consensus       249 r~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si  328 (449)
                      +....+++++..+....++++..++..++=..+.+.+.++++++..|+..++....+.+++.++++.....+....   +
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~---~  153 (342)
T TIGR00797        77 LLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN---V  153 (342)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---H
Confidence            8889999888888889999998765433211122347899999999999999999999999999987776663222   3


Q ss_pred             HHHHHHHHHHH-h---hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013111          329 IYIVMNVILIQ-S---AGSVGLILANSLNMILRIIYSAIFIKH  367 (449)
Q Consensus       329 ~~l~~~~~l~~-~---~G~~Gli~an~~nm~~ri~~s~~~i~~  367 (449)
                      +.+..++.+.. .   +|..|..++..+.-.+.......+.++
T Consensus       154 ~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~  196 (342)
T TIGR00797       154 INIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK  196 (342)
T ss_pred             HHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333443443 3   348888888877776666666666554

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=98.59  E-value=7.3e-06  Score=86.15  Aligned_cols=202  Identities=11%  Similarity=0.007  Sum_probs=154.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhh
Q 013111          158 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  237 (449)
Q Consensus       158 ~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~  237 (449)
                      ..|++++++.....++++..+.+=.|.+++|++.+.++.+.|++++++-.+..- +..=+....-+.-++...++|.   
T Consensus        10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~-~~~~~~~g~~~lvsq~~Ga~~~---   85 (453)
T PRK09575         10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILG-IGLMVGMGTGSLLSIKRGEGDL---   85 (453)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHhcCCCH---
Confidence            458999999999999999999999999999999888889999988877665443 3334555555777887765533   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHH
Q 013111          238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  317 (449)
Q Consensus       238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~  317 (449)
                      ++.++.+++.+++...+++++.......+++++.+..++.-....+.++++++++..|+..++.....++++.++++...
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~  165 (453)
T PRK09575         86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT  165 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            45667788889999999998888888999999987644432222244799999999999999999999999999997666


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013111          318 RSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIK  366 (449)
Q Consensus       318 ~~~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~~s~~~i~  366 (449)
                      ..+...   .++-+...+.+..  .+|..|..+|..+...+.......++.
T Consensus       166 ~~~~~~---~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~  213 (453)
T PRK09575        166 GLMVIG---ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFF  213 (453)
T ss_pred             HHHHHH---HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655322   2444455555554  379999999999888888777776654

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=98.50  E-value=2e-05  Score=82.70  Aligned_cols=200  Identities=16%  Similarity=0.133  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111          160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  239 (449)
Q Consensus       160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~  239 (449)
                      |++++++.....++++..+.+=.|.+.+|++.+.++.+.+++++++-+...-. ..=+....-+.-+|...++   |.++
T Consensus         9 k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~-~~~~~~g~~~lvsq~~Ga~---~~~~   84 (441)
T PRK10367          9 KALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFML-LLFLRMSTTGLTAQAFGAK---NPQA   84 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC---CHHH
Confidence            88999999999999999999999999999987777888899988876665433 3345666667777776554   3355


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013111          240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS  319 (449)
Q Consensus       240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~  319 (449)
                      .++...+.+.+...++.+...++....+++++++..+.-....+.++++++++..|+..++....+++.+.++++.-...
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~  164 (441)
T PRK10367         85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL  164 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence            66677778888888888888888888899888665443322334579999999999999999999999999999776655


Q ss_pred             hhHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013111          320 NDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIK  366 (449)
Q Consensus       320 ~~~m~~~si~~l~~~~~l~~--~~G~~Gli~an~~nm~~ri~~s~~~i~  366 (449)
                      +...   .++-+...+.++.  .+|..|..+|..+...+.......+..
T Consensus       165 ~ii~---~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~  210 (441)
T PRK10367        165 LVVG---NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVR  210 (441)
T ss_pred             HHHH---HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5322   2444455555543  368999999987776666555544443

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=98.35  E-value=6.1e-05  Score=79.37  Aligned_cols=203  Identities=18%  Similarity=0.176  Sum_probs=156.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhh
Q 013111          158 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  237 (449)
Q Consensus       158 ~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~  237 (449)
                      ..|++++++..+..++++..+++=.|.+.+|++. .++.+.=++++.+-.++--... =+.-..-+..||....+   |.
T Consensus        15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~~~~~-gl~~g~~~liaq~~Ga~---~~   89 (455)
T COG0534          15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLIIAIFI-GLGTGTTVLVAQAIGAG---DR   89 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHcCC---ch
Confidence            4489999999999999999999999999999999 6667766677655554443333 55666667777776544   34


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHH
Q 013111          238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK  317 (449)
Q Consensus       238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~  317 (449)
                      ++.+++.++.+-+...++++....+...+++++.++.+++-..+.+.+++++.++-.|++.++-..++++.+.|+++.-.
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m  169 (455)
T COG0534          90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM  169 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence            55777788888889999989999999999999999887543444456899999999999999999999999999997766


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013111          318 RSNDSLLVFSVIYIVMNVILIQS----AGSVGLILANSLNMILRIIYSAIFIKHY  368 (449)
Q Consensus       318 ~~~~~m~~~si~~l~~~~~l~~~----~G~~Gli~an~~nm~~ri~~s~~~i~~~  368 (449)
                      ....   +..+.=+...++++..    +|..|..+|..++..+-......++.+.
T Consensus       170 ~~~~---~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~  221 (455)
T COG0534         170 YILL---LGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRK  221 (455)
T ss_pred             HHHH---HHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6553   3334445555555543    7899999999888877777776666543

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=98.34  E-value=0.00013  Score=76.91  Aligned_cols=192  Identities=13%  Similarity=0.148  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHH
Q 013111          166 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA  245 (449)
Q Consensus       166 ~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~  245 (449)
                      +.+.+..+++..+..=.|..++++..++++.|.|+.+..+-++.......-+..+.-...+|...++   |+++.++.+.
T Consensus         5 ~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~---~~~~~~~~~~   81 (488)
T TIGR02900         5 TFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKN---DRKNIKKILK   81 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcc---chhhHHHHHH
Confidence            4578888999999999999999999999999999999988777766655567777777777765443   3344556666


Q ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHH
Q 013111          246 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLV  325 (449)
Q Consensus       246 ~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~  325 (449)
                      ....+...+++++.......++.+...+.++.   . ....+++++...|+.+++.+.++++++.++.+.....+.....
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~---~-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDE---R-SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCh---h-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            66666666666666666667777666554432   1 2357888889999999999999999999999887766643333


Q ss_pred             HHHHHH-HHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013111          326 FSVIYI-VMNVILI---QSAGSVGLILANSLNMILRIIYSAIF  364 (449)
Q Consensus       326 ~si~~l-~~~~~l~---~~~G~~Gli~an~~nm~~ri~~s~~~  364 (449)
                      ..+... ...+.+.   ...|..|..+++.+...+-..+...+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~  200 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFF  200 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322221 1111111   12566666666655544444444333

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=98.34  E-value=0.00012  Score=77.46  Aligned_cols=196  Identities=11%  Similarity=0.121  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhHhhccCccch-hHHHHHhhhhhHHHHHHh-hhhhhhhHHHHHHHhcCCCchhhhHH
Q 013111          163 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQ-AVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKI  240 (449)
Q Consensus       163 ~~~~~~~~~q~ilk~lltegdklii~~~~s~~~q-G~Y~la~nlgsl~ar~lf-~PIee~~~~~Fs~~~~~~~~~~~~~l  240 (449)
                      .+-+..++..+++..++.=.|.+++++..++++. |.|+.+.++-.+....+. .-+..+.-|...+..++     +++.
T Consensus         3 ~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~-----~~~~   77 (502)
T TIGR01695         3 LKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKK-----EKEA   77 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh-----hhHH
Confidence            4556677888999999999999999999999999 999999887766554443 33555555555443321     1334


Q ss_pred             HHHHHHHHHHHHHH-HHHHHhhcccchHHHHHHHccCCCCCC---chHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHH
Q 013111          241 GNSLAEALKLVLLI-GLVFMAFGPSYSYSLVRLLYGKKWSDG---EASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQL  316 (449)
Q Consensus       241 ~~~~~~~lr~~~~l-~~~~~~~g~~~s~~ll~lllG~kW~~~---~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l  316 (449)
                      ++.+...+.....+ +++....+...++++..++ ++...++   .+.++++++++..|+.+++...++++++.++.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  156 (502)
T TIGR01695        78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLL-APGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIP  156 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHH
Confidence            44444434433333 3334455567777777754 3322232   14578999999999999999999999999998887


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHH
Q 013111          317 KRSNDSLLVFSVIYIVMNVILIQSAGSVGLI--LANSLNMILRIIYSAIFIKH  367 (449)
Q Consensus       317 ~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli--~an~~nm~~ri~~s~~~i~~  367 (449)
                      ...+....+.   .+...+.+...+|..|.+  ++..++..+...+...+.++
T Consensus       157 ~~~~i~~~i~---~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~  206 (502)
T TIGR01695       157 SFSPILFNIG---VILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK  206 (502)
T ss_pred             HHHHHHHHHH---HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666433322   222222234457888888  88877777776666655544

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.29  E-value=4.3e-05  Score=67.03  Aligned_cols=140  Identities=14%  Similarity=0.211  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013111          286 ALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFI  365 (449)
Q Consensus       286 lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i  365 (449)
                      ++|++|+..+++.++......+++.+++++..+.+....   ++-+...+.+.+.+|..|.+++..+..........+.+
T Consensus         1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~---~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~   77 (146)
T PF14667_consen    1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA---IVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYV   77 (146)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            378899989999999999999999999999988884333   44455555578889999999999999999999999999


Q ss_pred             HHHhccCccccccccCCchHHHHHHHHHHHHHHhHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHH
Q 013111          366 KHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLD----RQDFWATFLIHFSVGLTCFCISSIVI  430 (449)
Q Consensus       366 ~~~~~~~~~~~l~~~lp~~~~~~~~~~~i~~~s~~~~~~----~~~~~~~l~~~i~~G~~~~~~~~~~~  430 (449)
                      +|.++.+ .+..++..++...+..+ ++..+..+....+    +.+.+.++...+.+|.+.|.......
T Consensus        78 ~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~y~~~~~~~  144 (146)
T PF14667_consen   78 RKKIGIK-INWRRSLIKPILASIVM-AIVLYILNSLLPNIFPSRLSSLLQLLIGIIIGGIVYLLLLLLL  144 (146)
T ss_pred             HHHhCCC-hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988553 22233555554444444 3333333333311    12456677788888888888776543

>PRK10189 MATE family multidrug exporter; Provisional

Probab=98.25  E-value=0.0002  Score=75.96  Aligned_cols=200  Identities=15%  Similarity=0.184  Sum_probs=147.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhh
Q 013111          158 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS  237 (449)
Q Consensus       158 ~~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~  237 (449)
                      +.|++++++.....++++..+..=.|.+.+|++ +.++.+.+++++++-.+. -.+..-+....-+.-++....+|.   
T Consensus        27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l-G~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~---  101 (478)
T PRK10189         27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWL-GKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDR---  101 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCH---
Confidence            458899999999999999999999999999985 567899999999986553 344446777777888887766533   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHcc--CCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHH
Q 013111          238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG--KKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQ  315 (449)
Q Consensus       238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG--~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~  315 (449)
                      ++.++.....+.+...++++...+....+++++.++.|  |.-....+.++++++++..|+..++....+++++.++++.
T Consensus       102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~  181 (478)
T PRK10189        102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI  181 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence            45666677788888888888888888899999988753  2211122347889999999999999999999999999987


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013111          316 LKRSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFI  365 (449)
Q Consensus       316 l~~~~~~m~~~si~~l~~~~~l~~------~~G~~Gli~an~~nm~~ri~~s~~~i  365 (449)
                      -...+....   ++-+...+.+..      .+|..|..+|..+.-.+.......+.
T Consensus       182 ~~~i~~~~~---~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~  234 (478)
T PRK10189        182 PLLINGGMN---ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVL  234 (478)
T ss_pred             hHHHHHHHH---HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            776663322   222233333332      36889999988776666655544443

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=98.23  E-value=6.2e-05  Score=79.43  Aligned_cols=185  Identities=16%  Similarity=0.060  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111          160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  239 (449)
Q Consensus       160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~  239 (449)
                      |++++++.....+++...+..=.|.+.+|++ +.++++.+++++.+-++.. .+..-+....-+.-+|...+++.   ++
T Consensus        10 k~il~~a~P~~~~~~~~~~~~~~d~~~v~~l-g~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~~~---~~   84 (464)
T PRK00187         10 KAILRLAGPLIASQLAHMLMVFTDTLMMGRL-GPEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAGDI---EG   84 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCh---hh
Confidence            8899999999999999999999999999996 6678999999998877654 44456777888888888766533   45


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013111          240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS  319 (449)
Q Consensus       240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~  319 (449)
                      .++.+...+.+...++.+...... .+++++++...|.-.-..+.+.++++++..|+..++.....++++.++++.....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~  163 (464)
T PRK00187         85 ATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI  163 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            667777778887777777666544 5788888653332111223478999999999999999999999999999877666


Q ss_pred             hhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHH
Q 013111          320 NDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLN  353 (449)
Q Consensus       320 ~~~m~~~si~~l~~~~~l~~------~~G~~Gli~an~~n  353 (449)
                      +....   ++-++..|.++.      .+|..|..+|..+.
T Consensus       164 ~~~~~---~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~  200 (464)
T PRK00187        164 SLAGA---VANLLLNYALIEGWFGLPKLGLMGIGLVTALV  200 (464)
T ss_pred             HHHHH---HHHHHHHHHHHcCCCCCccccccchHHHHHHH
Confidence            64333   333444444442      25788888887543

>PRK15099 O-antigen translocase; Provisional

Probab=97.91  E-value=0.0014  Score=67.96  Aligned_cols=192  Identities=13%  Similarity=0.019  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHH
Q 013111          163 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN  242 (449)
Q Consensus       163 ~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~  242 (449)
                      .+-..+.....+++.+.+=.-.-+++++.++++.|.++...++-++..-....-+.++.-...+|.  +   +|+++.++
T Consensus         4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~---~~~~~~~~   78 (416)
T PRK15099          4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--H---DQPQQLRA   78 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--C---CCHHHHHH
Confidence            344456666777777777777789999999999999999988777666555555555544444443  1   33345566


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhH
Q 013111          243 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDS  322 (449)
Q Consensus       243 ~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~  322 (449)
                      .+...+.+....+++....+...++++...++++.    +...++.+.++..+...++...++..++.++++.-...+..
T Consensus        79 ~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~  154 (416)
T PRK15099         79 VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHT----DYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIV  154 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777777777777777788888887776554    23356666666666777777788888877766654444433


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013111          323 LLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIK  366 (449)
Q Consensus       323 m~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~~~i~  366 (449)
                      ..+..+..   ........|..|.++|..+.-.+-..+...++.
T Consensus       155 ~~~~~i~l---~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~  195 (416)
T PRK15099        155 GSLIGVAA---YYLCYRLGGYEGALLGLALVPALVVLPAGIMLI  195 (416)
T ss_pred             HHHHHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333222   111122248899999887766555555554443

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=97.80  E-value=0.02  Score=60.30  Aligned_cols=168  Identities=14%  Similarity=0.199  Sum_probs=112.8

Q ss_pred             CccchhHHHHHhhhhhHHHHHHh-hhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Q 013111          192 TPYNQAVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLV  270 (449)
Q Consensus       192 s~~~qG~Y~la~nlgsl~ar~lf-~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll  270 (449)
                      +.++--.|.+|.++-.++.+.+. ..+..+.-|.|++.. ++++++.++   -...++.....+++.+...+...+++++
T Consensus         7 ~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~---f~~~~~~~~~~~~~~l~~l~~lfa~~iv   82 (451)
T PF03023_consen    7 ASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARR---FISTLLTILLIISLLLTLLGILFAPPIV   82 (451)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566689999999999988886 689999999999998 443444333   3445677777777777777788999999


Q ss_pred             HHHccCCCCCCc---hHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh---hH
Q 013111          271 RLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG---SV  344 (449)
Q Consensus       271 ~lllG~kW~~~~---~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G---~~  344 (449)
                      +++.+. ..++.   +..++++..+++++..++++..+..++..+-..-.-.+....   +..+...+.+....|   ..
T Consensus        83 ~~la~g-~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N---~~~I~~~~~~~~~~~~~~i~  158 (451)
T PF03023_consen   83 RLLAPG-FSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFN---LSIILSLLLLSNSWGQENIY  158 (451)
T ss_pred             HHHCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH---HHHHHHHHHHHHhcCchHHH
Confidence            876644 43331   235778888899999999999999998876544333332222   222222222344456   55


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 013111          345 GLILANSLNMILRIIYSAIFIKH  367 (449)
Q Consensus       345 Gli~an~~nm~~ri~~s~~~i~~  367 (449)
                      ++.++..+...++..+-....+|
T Consensus       159 ~la~g~~~g~~~~~l~~l~~~~~  181 (451)
T PF03023_consen  159 ALAWGVLIGAIIQFLIQLPYLRR  181 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666665555555444

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=97.55  E-value=6.3e-05  Score=66.90  Aligned_cols=147  Identities=14%  Similarity=0.128  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHH
Q 013111          169 FTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEAL  248 (449)
Q Consensus       169 ~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~l  248 (449)
                      ...++++..+....|..+++++ +.++.+.|+++.++.++..- +..-+.+..-+.-++...++|.++   .++.++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~~-~~~g~~~a~~~~~s~~~G~~~~~~---~~~~~~~~~   76 (162)
T PF01554_consen    2 IALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILFM-LIFGLATALQILISQNIGAGDYKR---AKKVVRQGL   76 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCSSSTTT---CCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhh-hcccccccccceeecccccccccc---ccccccccc
Confidence            3567888899999999999999 99999999999999988766 555888998888888876654444   555577789


Q ss_pred             HHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhh
Q 013111          249 KLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN  320 (449)
Q Consensus       249 r~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~  320 (449)
                      ++...++++...+....+++++.+...++-....+.+.+++.++..|+.+++....+++++.++++.....+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  148 (162)
T PF01554_consen   77 LLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYIS  148 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHH
T ss_pred             ccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHH
Confidence            999999999888888888888877555543333345788888889999999999999999999997665555

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.54  E-value=0.021  Score=54.05  Aligned_cols=167  Identities=16%  Similarity=0.210  Sum_probs=99.6

Q ss_pred             HhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013111          184 KLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGP  263 (449)
Q Consensus       184 klii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~~~lr~~~~l~~~~~~~g~  263 (449)
                      ..+++|..+++|.|.|+.+.+..++........+++...-     ..+   +|+++.++.....+.....++.....+.+
T Consensus         8 ~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (251)
T PF13440_consen    8 LILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAA---RDKQDIRSLLRFSLLVSLLLAVILAILAI   79 (251)
T ss_pred             HHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999888766566555432     111   22223333333333333333333332222


Q ss_pred             cchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Q 013111          264 SYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGS  343 (449)
Q Consensus       264 ~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~~~si~~l~~~~~l~~~~G~  343 (449)
                      ..+.     +.++    ++..+++...+...+..+++........+..+.+.....+..............+...  .+.
T Consensus        80 ~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  148 (251)
T PF13440_consen   80 LIAY-----FFGD----PELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLG--LNL  148 (251)
T ss_pred             HHHH-----HhCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--hhH
Confidence            2222     2322    2223466777778889999988988899998888766666433333322222211111  367


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013111          344 VGLILANSLNMILRIIYSAIFIKHYF  369 (449)
Q Consensus       344 ~Gli~an~~nm~~ri~~s~~~i~~~~  369 (449)
                      .+.+++.++.......+.....++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (251)
T PF13440_consen  149 WSILLAFIISALLALLISFYLLRRKL  174 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            77888887777776777777655444

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.34  E-value=0.15  Score=48.41  Aligned_cols=187  Identities=13%  Similarity=0.170  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHHHHHHH
Q 013111          166 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA  245 (449)
Q Consensus       166 ~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l~~~~~  245 (449)
                      ..+.+..+++..+..=.-..+++|..+++|.|.|+.+.++.++..-...--++++.--..++..++     +++.+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~-----~~~~~~~~~   79 (273)
T PF01943_consen    5 SLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK-----KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----HHHHHHHHH
Confidence            344555666666777677889999999999999999999999888777777777776666665422     111222222


Q ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHH-HHHHhhhhHHHHHHhhCCHHHHHHhhhHHH
Q 013111          246 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYV-VVLAMNGTSEAFLHAVATEDQLKRSNDSLL  324 (449)
Q Consensus       246 ~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi-~~la~Ngi~eaf~~a~~~~~~l~~~~~~m~  324 (449)
                      ..+. ...++..+..+....+    .....+++.     ....+++... ++..++...+.+.++..+.+.....+   +
T Consensus        80 ~~~~-~~~~~~~i~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  146 (273)
T PF01943_consen   80 SVLF-LLLIFSLIFLLILLIA----SFFGNPSLS-----LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISN---I  146 (273)
T ss_pred             HHHH-HHHHHHHHHHHHHHHH----HHcCCchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            2222 2222222222222111    122222221     2333333322 46777777777777764443333333   2


Q ss_pred             HHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013111          325 VFSVIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHYFQ  370 (449)
Q Consensus       325 ~~si~~l~~~~~l~~~-~G~~Gli~an~~nm~~ri~~s~~~i~~~~~  370 (449)
                      ...+........+... .+..+.+.+..+...+...++..+.++..+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
T PF01943_consen  147 ISSLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKLR  193 (273)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2333333333323322 347788888888888877788888776653

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PRK10459 colanic acid exporter; Provisional

Probab=97.26  E-value=0.029  Score=59.38  Aligned_cols=182  Identities=14%  Similarity=0.078  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhHH
Q 013111          161 QLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKI  240 (449)
Q Consensus       161 ~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~l  240 (449)
                      +..+=..|.+..++..++..=.-..+++|..+++|.|.|+.+..+-++..-.....++++.    .|   +++ +++++.
T Consensus         6 ~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~---~~~-~~~~~~   77 (492)
T PRK10459          6 KTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQ---RQD-ISHLQL   77 (492)
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hh---ccc-CCHHHH
Confidence            3444445566677777777777888999999999999999999988877776666666643    12   221 222223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHhh
Q 013111          241 GNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN  320 (449)
Q Consensus       241 ~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~~  320 (449)
                      ...    .......++.........++++- .++++.    +..+++.+.++..++..++....+..+...+-+.....+
T Consensus        78 ~~~----~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~  148 (492)
T PRK10459         78 STL----YWLNVGLGIVVFVLVFLLSPLIA-DFYHNP----ELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE  148 (492)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHH-HHcCCh----hhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence            222    22333344433333334444443 344432    233577777777777777666666666555544444433


Q ss_pred             hHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHH
Q 013111          321 DSLLVFSVIYIVMNVIL-IQSAGSVGLILANSLNMILRIIYSA  362 (449)
Q Consensus       321 ~~m~~~si~~l~~~~~l-~~~~G~~Gli~an~~nm~~ri~~s~  362 (449)
                      ...   .+........+ ...+|.+|+++++.+.-.+......
T Consensus       149 ~~~---~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~~~  188 (492)
T PRK10459        149 ISA---VVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLLFG  188 (492)
T ss_pred             HHH---HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHH
Confidence            222   22222222211 2236888999988877666544333

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=95.87  E-value=3.2  Score=44.46  Aligned_cols=149  Identities=14%  Similarity=0.137  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCc-cchhHHHHHhhhhhHHHHHHhhhh-hhhhHHHHHHHhcCCCchhh
Q 013111          160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-YNQAVYGLVDKLGSLVVRMVFLPF-EESSYATFARSASGQYPQKS  237 (449)
Q Consensus       160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~-~~qG~Y~la~nlgsl~ar~lf~PI-ee~~~~~Fs~~~~~~~~~~~  237 (449)
                      +++++-+..+....++..++==....+++..++. ..--.|.+|.++-.+.-|..-... +++.-|.|.|..+++++++.
T Consensus         7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~   86 (518)
T COG0728           7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA   86 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence            5567777777777777777766677788888866 667789999999999999888766 78888999998865533332


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCc---hHHHHHHHHHHHHHHHhhhhHHHHHHhhC
Q 013111          238 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVA  311 (449)
Q Consensus       238 ~~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~---~~~lL~~yc~yi~~la~Ngi~eaf~~a~~  311 (449)
                      ++.++.   ..-....+.+.+...+...++.+++.+.++.|.+++   +..+.++.-.|++++.+-....+.+|+..
T Consensus        87 ~~f~~~---v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~  160 (518)
T COG0728          87 RFFSRL---VTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRN  160 (518)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            333222   233555555566666667888888899999873322   23456777778888888777766666544

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=95.49  E-value=3.7  Score=43.05  Aligned_cols=187  Identities=14%  Similarity=0.114  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111          160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  239 (449)
Q Consensus       160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~  239 (449)
                      ++..+=..+.+..++.+.++.=.-..+++|..+++|.|.|+.+...-++.......=++++.--.-++..+++   +...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~---~~~~   82 (480)
T COG2244           6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKG---EYLL   82 (480)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhccc---HHHH
Confidence            4455556667777778888888889999999999999999999999988888775555554443333333221   1111


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013111          240 IGNS-LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  318 (449)
Q Consensus       240 l~~~-~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~  318 (449)
                      .... ....+.....++.+......          ....+ +++....+++.+.+.++........+..++..+-+....
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (480)
T COG2244          83 LILLSVLLLLLLALILLLLLLLIAY----------LLAPI-DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLAL  151 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------Hhccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence            1111 12122222222222211111          11111 222346788888888888888888777777766544333


Q ss_pred             hhhHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 013111          319 SNDSL-LVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSA  362 (449)
Q Consensus       319 ~~~~m-~~~si~~l~~~~~l~~~~G~~Gli~an~~nm~~ri~~s~  362 (449)
                      ....- ......+....  .....+.++.+.+..........+-.
T Consensus       152 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (480)
T COG2244         152 SIVSSIFLLAAVFALLF--AALGLAVWALVLGAVVSLLVLLILLG  194 (480)
T ss_pred             HHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            32111 11111111111  01125677777777776666555443

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=85.10  E-value=47  Score=35.36  Aligned_cols=185  Identities=18%  Similarity=0.114  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111          160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  239 (449)
Q Consensus       160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~  239 (449)
                      |+++.++.......+.+....-.+...+|+..+. +....+++++......+.+..=+..+.=+..+|.-..++-   +.
T Consensus        28 k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l-eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~---~~  103 (473)
T KOG1347|consen   28 KELARLALPAILTFLAQPLLSLVSTAFAGHLGNL-ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF---TA  103 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch-HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc---ch
Confidence            7789999999999999999999999999999999 9999999998887765655555555555555555432211   11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHH----HHHHHHhhhhHHHHHHhhCCHHH
Q 013111          240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCL----YVVVLAMNGTSEAFLHAVATEDQ  315 (449)
Q Consensus       240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~----yi~~la~Ngi~eaf~~a~~~~~~  315 (449)
                      +.....+..-.....++ .......++++++..+..+.=.+    ..-+.|+.    .++-.+++-.++.|.++.+....
T Consensus       104 lg~~lqrs~~~l~~~~~-~~~~l~~~~~~il~~lgq~~~i~----~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~  178 (473)
T KOG1347|consen  104 LGVYLQRSGIVLLVQGL-PISLLILNSEPILLLLGQDPDIS----RDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLP  178 (473)
T ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHccHHHHHHhCCChhHH----HHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchH
Confidence            22221111111111222 22233356678877666554333    34444443    33444455555556664443322


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHH
Q 013111          316 LKRSNDSLLVFSVIYIVMNVILIQS--AGSVGLILANSLNMIL  356 (449)
Q Consensus       316 l~~~~~~m~~~si~~l~~~~~l~~~--~G~~Gli~an~~nm~~  356 (449)
                      +.-.   -.......+..+|.+...  +|..|..++..++--.
T Consensus       179 ~~~~---~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~  218 (473)
T KOG1347|consen  179 LLVI---GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWL  218 (473)
T ss_pred             HHHH---HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHH
Confidence            2222   223336677788877654  5766766666554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	449
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 58/402 (14%), Positives = 112/402 (27%), Gaps = 105/402 (26%)

Query: 45  QGLSYSN--PYAQAIFINGFAC--VLELLAEPL------YILSQNLLLLRLRLVVETVAT 94
               Y +     +  F++ F C  V ++    L      +I+     +     +      
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW---- 69

Query: 95  FSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGN 154
                    L+ KQ EM +  V  + ++ Y        +    L    KT    P     
Sbjct: 70  --------TLLSKQEEMVQKFVEEVLRINYK-------F----LMSPIKTEQRQP--SMM 108

Query: 155 MMSYDKQLANMCTLFTFQSFRKLLLQEGEKL-----VLVWLDTPYNQAVYGL--VDK--L 205
              Y +Q   +      Q F K  +   +        L+ L    N  + G+    K  +
Sbjct: 109 TRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 206 GSLVVR----MVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF 261
              V         + F+   +       S   P+   ++   L   +           + 
Sbjct: 167 ALDVCLSYKVQCKMDFK-IFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 262 GP----SYSYSLVRLLYGKKWSDGEASTALRYYCLYV--------VVLAMNGTSEAFLHA 309
                 S    L RLL  K + +          CL V           A N + +     
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYEN----------CLLVLLNVQNAKAWNAFNLSCKIL--- 269

Query: 310 VATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 369
           + T    K+  D L   +  +I ++        S+ L      +++L+ +          
Sbjct: 270 LTTRF--KQVTDFLSAATTTHISLDHH------SMTLTPDEVKSLLLKYL---------- 311

Query: 370 QGSSSFSFRSSLPSGWPILLVSGVITLFSE--RIFLDRQDFW 409
                      + +  P       +++ +E  R  L   D W
Sbjct: 312 -DCRPQDLPREVLTTNPR-----RLSIIAESIRDGLATWDNW 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	449
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.79
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	98.7

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.79  E-value=1.1e-16  Score=164.82  Aligned_cols=353  Identities=13%  Similarity=0.029  Sum_probs=254.1

Q ss_pred             CcCchhhHHHHHHHHH-hHhHHHHHHHHHHHHHHHHhhcccCCchh-----HHHHHHHHHHHHHHHhhhHHHHHHHhhhh
Q 013111            9 GASREENAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLL   82 (449)
Q Consensus         9 ~~~~~~~~~~~~n~~w-l~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~~~~ls~iie~l~ep~~~~~q~~l~   82 (449)
                      +..|+++-++..+.+. +.+.++++++++ ..+.-........+|.     ..-+++++.+.....+.......+|-.-+
T Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~  158 (460)
T 3mkt_A           80 GAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSL  158 (460)
T ss_dssp             SSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSC
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3344445556666665 777777776654 2222121222223332     13357788888888888888888888889


Q ss_pred             hhhHhHHHHHHHHHhHHHHHhHhhh-c--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCccccc
Q 013111           83 LRLRLVVETVATFSRCFTMCILIVK-Q--YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYD  159 (449)
Q Consensus        83 f~~~~~~e~~a~~~~~v~~i~la~~-~--~~~~~v~~f~~~ql~~s~~~~~~y~~~~~~~~~~~~~~~~p~~~~~~~~~~  159 (449)
                      +|.-......+.+++.+..+.+... .  ++ +++.+.+++.....+...+..+.+..+++..+..+..+...+.+...-
T Consensus       159 ~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (460)
T 3mkt_A          159 TKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE-LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKEL  237 (460)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSST
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHH
Confidence            9999999999999988888776632 1  13 566666666666555544443433333222111111011001111233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhhH
Q 013111          160 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK  239 (449)
Q Consensus       160 ~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~~  239 (449)
                      |++++++.+.+.+++...+..+.|+.+++++ +.++.|.|++++++.+++. .+...+..+..|..++...++|.++   
T Consensus       238 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~---  312 (460)
T 3mkt_A          238 IRLFRLGFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKG---  312 (460)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCT---
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHH---
Confidence            8899999999999999999999999999999 8899999999999999988 6667999999999999987765554   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHHh
Q 013111          240 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS  319 (449)
Q Consensus       240 l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~~  319 (449)
                      .++.+++.++....+++++..+....+++++.++.+|+.....+.+++++++...++.+++.+.+..+++.++++.....
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  392 (460)
T 3mkt_A          313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR  392 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            44457778899999999988888899999999888776543335689999999999999999999999999999877776


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013111          320 NDSLLVFSVIYIVMNVILIQS-------AGSVGLILANSLNMILRIIYSAIFIKHYFQ  370 (449)
Q Consensus       320 ~~~m~~~si~~l~~~~~l~~~-------~G~~Gli~an~~nm~~ri~~s~~~i~~~~~  370 (449)
                      +..-.  .++.++..+.+...       +|..|..++..+...++.....+..+|..+
T Consensus       393 ~~~~~--~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~  448 (460)
T 3mkt_A          393 TFISY--WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK  448 (460)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred             HHHHH--HHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            63211  14445666667777       899999999999999888777666655543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=98.70  E-value=3.3e-08  Score=101.14  Aligned_cols=201  Identities=12%  Similarity=0.074  Sum_probs=147.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhccCccchhHHHHHhhhhhHHHHHHhhhhhhhhHHHHHHHhcCCCchhhh
Q 013111          159 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK  238 (449)
Q Consensus       159 ~~~l~~~~~~~~~q~ilk~lltegdklii~~~~s~~~qG~Y~la~nlgsl~ar~lf~PIee~~~~~Fs~~~~~~~~~~~~  238 (449)
                      .|++++++..+..+++...+++-.|..++++ .++++.|.|+.++++..+ ...+...+.....|..++...++|+   +
T Consensus        11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~~---~   85 (460)
T 3mkt_A           11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGRQ---H   85 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSST---T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCh---h
Confidence            3889999999999999999999999999999 789999999999999554 4555667888888888887655433   3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHhhhhHHHHHHhhCCHHHHHH
Q 013111          239 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR  318 (449)
Q Consensus       239 ~l~~~~~~~lr~~~~l~~~~~~~g~~~s~~ll~lllG~kW~~~~~~~lL~~yc~yi~~la~Ngi~eaf~~a~~~~~~l~~  318 (449)
                      +.++.+...+.....+++++... ...+++++.++.++.-....+.+++++++...|+..++....+++++.++++....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           86 KIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            45556666777777777775543 56677776644333211112336788888899999999999999999999976665


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013111          319 SNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFIKHY  368 (449)
Q Consensus       319 ~~~~m~~~si~~l~~~~~l~~------~~G~~Gli~an~~nm~~ri~~s~~~i~~~  368 (449)
                      .+....   ++-+...+.+..      .+|..|.+++..+...+.......+..+.
T Consensus       165 ~~~~~~---~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~  217 (460)
T 3mkt_A          165 IGFIGL---LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS  217 (460)
T ss_dssp             HHHHHH---HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHH---HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            553322   333444455554      37999999999888777777776666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00