Citrus Sinensis ID: 013113

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDEDDGEEY
cccEEEEEEccccccccccHHHHHHHccccccccccccccccccccccccccEEccccccccccEEEEccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccEEEEEcHHHHHHHHHHccccccccccccHHHHHHHHcccEEcccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccEEEccccccHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
ccEEEEEEEccccHHccHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHEcccccccccccccHcEcccccccccHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHEEEcccccccccHHHHHHcccccccEcccccccccEcccccHHHHHccHHHHHHHHccHHHcccccccccccEEEEEEEEccccccHHHHHHHHHHHccccEEEEEEcccccEEEEEcccccccccccHHHcHHEEHEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccc
MREIISIHIGQAGIQVGNSCWElyclehgihpdgmmpsdntiGVAHDAFntffsetsagrhvpravfvdleptvidevrtgsyrqlfhpeqlisgkedaannfarghytvGKEIVDLCLDRVRKlsdnctglQGFLVFNavgggtgsgLGSLLLERLsvdygkksklgftiypspqvstavvepynsvlsthsllehTDVAVLLDNEAIYDICRRsldierptytNLNRLISQIISSLTtslrfdgainvditefqtnlvpyprihfmlssyapvisaekayheqlsvpeitnavfepssmmakcdprhgkyMACClmyrgdvvpkdVNAAVATIktkrtvqfvdwcptgfkcginyqpptvvpggdlakVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHwyvgegmeegefsEAREDLAALEKDYeevgaegvddeddgeey
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATiktkrtvqfvdWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYeevgaegvddeddgeey
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVgggtgsglgslllerlsVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRlisqiisslttslRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKdyeevgaegvddeddgeey
***IISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEG*************************************
*REIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDN***VAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA************
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE***************
MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE***********
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MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGExxxxxxxxxxxxxxxxxxxxxGVDDEDDGEEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
P28752450 Tubulin alpha-1 chain OS= yes no 1.0 0.997 0.968 0.0
O22349450 Tubulin alpha-3 chain OS= N/A no 1.0 0.997 0.962 0.0
B9DHQ0450 Tubulin alpha-5 chain OS= yes no 0.968 0.966 0.977 0.0
Q56WH1450 Tubulin alpha-3 chain OS= yes no 0.968 0.966 0.977 0.0
P33627450 Tubulin alpha-6 chain OS= N/A no 0.968 0.966 0.970 0.0
Q43473450 Tubulin alpha-1 chain OS= N/A no 0.968 0.966 0.970 0.0
Q38771447 Tubulin alpha chain OS=Av N/A no 0.986 0.991 0.954 0.0
Q02245450 Tubulin alpha-5 chain OS= N/A no 0.968 0.966 0.967 0.0
P33629450 Tubulin alpha chain OS=Pr N/A no 1.0 0.997 0.92 0.0
Q6VAG0450 Tubulin alpha-2 chain OS= N/A no 1.0 0.997 0.915 0.0
>sp|P28752|TBA1_ORYSJ Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1 Back     alignment and function desciption
 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/450 (96%), Positives = 444/450 (98%), Gaps = 1/450 (0%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
           MREIISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+GVAHDAFNTFFSET AG+
Sbjct: 1   MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
           HVPRA+FVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD
Sbjct: 61  HVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           RVRKL+DNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
           SLRFDGAINVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS
Sbjct: 241 SLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           +VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 SVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAEGVDDE-DDGEEY 449
           AREDLAALEKDYEEVGAEG DDE DDGE+Y
Sbjct: 421 AREDLAALEKDYEEVGAEGADDENDDGEDY 450
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1 Back     alignment and function description
>sp|B9DHQ0|TBA5_ARATH Tubulin alpha-5 chain OS=Arabidopsis thaliana GN=TUBA5 PE=2 SV=2 Back     alignment and function description
>sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=2 Back     alignment and function description
>sp|P33627|TBA6_MAIZE Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1 Back     alignment and function description
>sp|Q43473|TBA1_HORVU Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1 Back     alignment and function description
>sp|Q38771|TBA_AVESA Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1 Back     alignment and function description
>sp|Q02245|TBA5_MAIZE Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1 Back     alignment and function description
>sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1 Back     alignment and function description
>sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
225435758449 PREDICTED: tubulin alpha-1 chain [Vitis 1.0 1.0 0.968 0.0
115472953450 Os07g0574800 [Oryza sativa Japonica Grou 1.0 0.997 0.968 0.0
6094431450 RecName: Full=Tubulin alpha-3 chain; Alt 1.0 0.997 0.962 0.0
224286230449 unknown [Picea sitchensis] 1.0 1.0 0.964 0.0
77999295467 unknown [Solanum tuberosum] 1.0 0.961 0.959 0.0
37936228450 alpha-tubulin [Miscanthus floridulus] 1.0 0.997 0.955 0.0
224052904450 tubulin alpha-4 chain [Populus trichocar 1.0 0.997 0.946 0.0
150247170450 alpha-tubulin 4 [Populus tremuloides] 1.0 0.997 0.944 0.0
443908533449 alpha-tubulin 1 [Hevea brasiliensis] 0.973 0.973 0.977 0.0
168049259449 predicted protein [Physcomitrella patens 1.0 1.0 0.955 0.0
>gi|225435758|ref|XP_002285721.1| PREDICTED: tubulin alpha-1 chain [Vitis vinifera] Back     alignment and taxonomy information
 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/449 (96%), Positives = 444/449 (98%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
           MREIISIHIGQAGIQVGNSCWELYCLEHGI PDGMMPSD T+GV HDAFNTFFSET AG+
Sbjct: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVGHDAFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
           HVPRA+FVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD
Sbjct: 61  HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query: 121 RVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           RVRKL+DNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
           SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS
Sbjct: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAEGVDDEDDGEEY 449
           AREDLAALEKDYEEVGAEGVDD+++ E+Y
Sbjct: 421 AREDLAALEKDYEEVGAEGVDDDEEAEDY 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|115472953|ref|NP_001060075.1| Os07g0574800 [Oryza sativa Japonica Group] gi|135399|sp|P28752.1|TBA1_ORYSJ RecName: Full=Tubulin alpha-1 chain gi|20379|emb|CAA77988.1| alpha 1 tubulin [Oryza sativa Japonica Group] gi|1136124|emb|CAA62918.1| alfa-tubulin [Oryza sativa Japonica Group] gi|34393570|dbj|BAC83168.1| Tubulin alpha-1 chain [Oryza sativa Japonica Group] gi|50509129|dbj|BAD30236.1| Tubulin alpha-1 chain [Oryza sativa Japonica Group] gi|110617750|gb|ABG78594.1| alpha-tubulin [Oryza sativa Japonica Group] gi|113611611|dbj|BAF21989.1| Os07g0574800 [Oryza sativa Japonica Group] gi|125558900|gb|EAZ04436.1| hypothetical protein OsI_26583 [Oryza sativa Indica Group] gi|125600815|gb|EAZ40391.1| hypothetical protein OsJ_24840 [Oryza sativa Japonica Group] gi|215695370|dbj|BAG90561.1| unnamed protein product [Oryza sativa Japonica Group] gi|215697286|dbj|BAG91280.1| unnamed protein product [Oryza sativa Japonica Group] gi|215740861|dbj|BAG97017.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|6094431|sp|O22349.1|TBA3_ELEIN RecName: Full=Tubulin alpha-3 chain; AltName: Full=Alpha-3-tubulin gi|2511535|gb|AAC05719.1| alpha-tubulin 3 [Eleusine indica] Back     alignment and taxonomy information
>gi|224286230|gb|ACN40824.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|77999295|gb|ABB16994.1| unknown [Solanum tuberosum] Back     alignment and taxonomy information
>gi|37936228|emb|CAD26891.1| alpha-tubulin [Miscanthus floridulus] Back     alignment and taxonomy information
>gi|224052904|ref|XP_002297631.1| tubulin alpha-4 chain [Populus trichocarpa] gi|118480971|gb|ABK92439.1| unknown [Populus trichocarpa] gi|222844889|gb|EEE82436.1| tubulin alpha-4 chain [Populus trichocarpa] Back     alignment and taxonomy information
>gi|150247170|gb|ABR67425.1| alpha-tubulin 4 [Populus tremuloides] Back     alignment and taxonomy information
>gi|443908533|gb|AGD80034.1| alpha-tubulin 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|168049259|ref|XP_001777081.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671524|gb|EDQ58074.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
TAIR|locus:2183259450 TUA3 "tubulin alpha-3" [Arabid 0.957 0.955 0.906 4.8e-213
TAIR|locus:2183154450 TUA5 "tubulin alpha-5" [Arabid 0.957 0.955 0.906 4.8e-213
TAIR|locus:2010677450 TUA4 "tubulin alpha-4 chain" [ 0.957 0.955 0.858 3.3e-205
TAIR|locus:2031015450 TUA2 "tubulin alpha-2 chain" [ 0.957 0.955 0.858 3.3e-205
TAIR|locus:2010846450 TUA1 "alpha-1 tubulin" [Arabid 0.957 0.955 0.860 5.4e-205
TAIR|locus:3439219450 TUA6 "Tubulin alpha-6" [Arabid 0.957 0.955 0.855 6.9e-205
UNIPROTKB|Q3ZCJ7449 TUBA1C "Tubulin alpha-1C chain 0.957 0.957 0.793 8.3e-193
ZFIN|ZDB-GENE-030822-1449 tuba1b "tubulin, alpha 1b" [Da 0.957 0.957 0.788 1.7e-192
UNIPROTKB|F2Z4C1451 TUBA3C "Uncharacterized protei 0.957 0.953 0.786 3.6e-192
UNIPROTKB|Q71U36451 TUBA1A "Tubulin alpha-1A chain 0.957 0.953 0.786 3.6e-192
TAIR|locus:2183259 TUA3 "tubulin alpha-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2059 (729.9 bits), Expect = 4.8e-213, P = 4.8e-213
 Identities = 390/430 (90%), Positives = 395/430 (91%)

Query:     1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
             MREIISIHIGQAGIQVGNSCWELYCLEHGI PDGMMPSD T+GVAHDAFNTFFSET AG+
Sbjct:     1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60

Query:    61 HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
             HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD
Sbjct:    61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120

Query:   121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
             RVRKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFTIYPSPQVSTA
Sbjct:   121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180

Query:   181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
             VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNR           
Sbjct:   181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240

Query:   241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
               RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSVPEITNAVFEP+S
Sbjct:   241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPAS 300

Query:   301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
             MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTVQFVDWCPTGFKCGINYQPP
Sbjct:   301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPP 360

Query:   361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
             TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct:   361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query:   421 AREDLAALEK 430
             AREDLAALEK
Sbjct:   421 AREDLAALEK 430
GO:0003924 "GTPase activity" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0045298 "tubulin complex" evidence=ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0071258 "cellular response to gravity" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
TAIR|locus:2183154 TUA5 "tubulin alpha-5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010677 TUA4 "tubulin alpha-4 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031015 TUA2 "tubulin alpha-2 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010846 TUA1 "alpha-1 tubulin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:3439219 TUA6 "Tubulin alpha-6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCJ7 TUBA1C "Tubulin alpha-1C chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030822-1 tuba1b "tubulin, alpha 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4C1 TUBA3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q71U36 TUBA1A "Tubulin alpha-1A chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B9DGT7TBA2_ARATHNo assigned EC number0.92180.96880.9666nono
P28752TBA1_ORYSJNo assigned EC number0.96881.00.9977yesno
Q02245TBA5_MAIZENo assigned EC number0.96780.96880.9666N/Ano
Q9FT36TBA_DAUCANo assigned EC number0.91090.97550.9711N/Ano
Q27352TBA_TRYCRNo assigned EC number0.86911.00.9955N/Ano
Q53M52TBA2_ORYSJNo assigned EC number0.92000.97550.9711nono
P29511TBA6_ARATHNo assigned EC number0.91950.96880.9666nono
Q9ZRJ4TBA_CHLVUNo assigned EC number0.92230.97550.9711N/Ano
P11481TBA1_VOLCANo assigned EC number0.91260.96880.9645N/Ano
P28287TBA_OXYGRNo assigned EC number0.91260.96880.9666N/Ano
Q71G51TBA_NEOCANo assigned EC number0.89650.96880.9602N/Ano
P22275TBA3_MAIZENo assigned EC number0.87331.00.9977N/Ano
Q43473TBA1_HORVUNo assigned EC number0.97010.96880.9666N/Ano
P46259TBA1_PEANo assigned EC number0.93360.97320.9668N/Ano
B9DHQ0TBA5_ARATHNo assigned EC number0.97700.96880.9666yesno
P33623TBA1_ANEPHNo assigned EC number0.92120.96210.9578N/Ano
P12543TBA_PLAYONo assigned EC number0.85741.00.9911N/Ano
P41351TBA_TETTHNo assigned EC number0.90180.97550.9755N/Ano
Q9ZRR5TBA3_HORVUNo assigned EC number0.92690.97550.9711N/Ano
Q25563TBA13_NAEGRNo assigned EC number0.90410.97550.9668N/Ano
P11139TBA1_ARATHNo assigned EC number0.92870.96880.9666nono
P09243TBA2_STYLENo assigned EC number0.90340.96650.9665N/Ano
P10873TBA_TOXGONo assigned EC number0.89650.96880.9602N/Ano
Q6VAG1TBA1_GOSHINo assigned EC number0.92000.97550.9711N/Ano
Q6VAG0TBA2_GOSHINo assigned EC number0.91551.00.9977N/Ano
Q96460TBA2_HORVUNo assigned EC number0.92460.97550.9711N/Ano
P09205TBA2_CHLRENo assigned EC number0.90800.96880.9645N/Ano
P09204TBA1_CHLRENo assigned EC number0.91260.96880.9645N/Ano
P10872TBA_TETPYNo assigned EC number0.89950.97550.9755N/Ano
Q38771TBA_AVESANo assigned EC number0.95480.98660.9910N/Ano
Q08114TBA_EUPOCNo assigned EC number0.90340.96880.9666N/Ano
P14641TBA2_MAIZENo assigned EC number0.92460.97550.9711N/Ano
P14640TBA1_MAIZENo assigned EC number0.92460.97550.9711N/Ano
P14642TBA_PLAFKNo assigned EC number0.86191.00.9911N/Ano
O22348TBA2_ELEINNo assigned EC number0.92900.97320.9776N/Ano
O22349TBA3_ELEINNo assigned EC number0.96221.00.9977N/Ano
P04105TBAN_PHYPONo assigned EC number0.86380.99770.9977N/Ano
O22347TBA1_ELEINNo assigned EC number0.92690.97550.9711N/Ano
Q56WH1TBA3_ARATHNo assigned EC number0.97700.96880.9666yesno
P33625TBA_EUGGRNo assigned EC number0.90630.97550.9711N/Ano
P33627TBA6_MAIZENo assigned EC number0.97010.96880.9666N/Ano
P33629TBA_PRUDUNo assigned EC number0.921.00.9977N/Ano
Q9BQE3TBA1C_HUMANNo assigned EC number0.83741.01.0yesno
P11237TBA1_NAEGRNo assigned EC number0.90630.97550.9668N/Ano
Q0WV25TBA4_ARATHNo assigned EC number0.92180.96880.9666nono
P11480TBAE_PHYPONo assigned EC number0.86600.99770.9977N/Ano
P50258TBAD_PHYPONo assigned EC number0.87910.99550.9933N/Ano
Q6VAF9TBA4_GOSHINo assigned EC number0.93360.97320.9711N/Ano
Q9ZRB7TBA_WHEATNo assigned EC number0.92230.97550.9711N/Ano
P04106TBA_TRYBRNo assigned EC number0.87801.00.9955N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024805001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence;; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain (By similarity) (449 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00029807001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence;; Tubulin is the majo [...] (445 aa)
     • •0.800
GSVIVG00023281001
SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_29, whole genome shotg [...] (447 aa)
     • •0.800
GSVIVG00017820001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence;; Tubulin is the majo [...] (445 aa)
     • •0.800
TUB
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence;; Tubulin is the major [...] (446 aa)
     • •0.800
GSVIVG00014415001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; Tubulin is the major [...] (448 aa)
     • •0.800
GSVIVG00009147001
SubName- Full=Chromosome undetermined scaffold_222, whole genome shotgun sequence;; Tubulin is [...] (449 aa)
     • •0.800
GSVIVG00000394001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence;; Tubulin is the majo [...] (447 aa)
     • •0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 0.0
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 0.0
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-172
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-169
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-157
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-151
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-131
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-109
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 5e-99
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 2e-97
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-89
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 1e-79
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 3e-72
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 4e-72
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 4e-62
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 4e-23
cd06060493 cd06060, misato, Human Misato shows similarity wit 6e-06
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information 
 Score = 1029 bits (2662), Expect = 0.0
 Identities = 419/450 (93%), Positives = 435/450 (96%), Gaps = 1/450 (0%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
           MRE ISIHIGQAGIQVGN+CWELYCLEHGI PDG MPSD T+G   DAFNTFFSET AG+
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120

Query: 121 RVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           R+RKL+DNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT+YPSPQVSTA
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQ+ISSLT 
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
           SLRFDGA+NVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEP+S
Sbjct: 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPAS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
           MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT+QFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCMISN+TAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAEGVDDE-DDGEEY 449
           AREDLAALEKDYEEVGAE  + E D+GEEY
Sbjct: 421 AREDLAALEKDYEEVGAESAEGEGDEGEEY 450

Length = 450
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
KOG1374448 consensus Gamma tubulin [Cytoskeleton] 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376407 consensus Alpha tubulin [Cytoskeleton] 100.0
KOG1375369 consensus Beta tubulin [Cytoskeleton] 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 100.0
KOG2530483 consensus Members of tubulin/FtsZ family [Cytoskel 99.97
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.96
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.94
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.93
PRK13018378 cell division protein FtsZ; Provisional 99.92
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.89
PRK09330384 cell division protein FtsZ; Validated 99.88
PF14881180 Tubulin_3: Tubulin domain 99.84
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.46
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.42
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.36
PF13809345 Tubulin_2: Tubulin like 97.77
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5e-132  Score=950.02  Aligned_cols=441  Identities=59%  Similarity=1.055  Sum_probs=423.4

Q ss_pred             CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113            1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT   80 (449)
Q Consensus         1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~   80 (449)
                      ||||||||+||||||||.+||+++|.||+|.++|.+...++.  +.++.++||+|++.++|+||||+||+||+||+.++.
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~--~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~   78 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDE--GDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN   78 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCccc--ccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence            999999999999999999999999999999999997665443  568899999999999999999999999999999999


Q ss_pred             cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113           81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD  160 (449)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de  160 (449)
                      |+|+.+|+|++++++++|+|||||+|+|+.|+++.+.++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|
T Consensus        79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e  158 (443)
T COG5023          79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE  158 (443)
T ss_pred             CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113          161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT  240 (449)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~  240 (449)
                      ||||.+.+++|+|.++.++++|||||++|++++|.|+||+++++||.+|+++|.+.|++++|+|.++|++||++|+++|+
T Consensus       159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt  238 (443)
T COG5023         159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT  238 (443)
T ss_pred             cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence            99999999999999989999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 013113          241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYR  320 (449)
Q Consensus       241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R  320 (449)
                      ++||||++|.||.+|.+||||+||+||+.++|+|+++..+..+++.++.++++++|+++|+|.+|+|+.++|++++.++|
T Consensus       239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r  318 (443)
T COG5023         239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR  318 (443)
T ss_pred             eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhh
Q 013113          321 GDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYA  400 (449)
Q Consensus       321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~  400 (449)
                      |++.++++++++.+++.|++..|++|.|+++|+++|+.+|..     ..+.+.++|+|+|+|+|.+.|+++.++|++||+
T Consensus       319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~-----~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~  393 (443)
T COG5023         319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSE-----PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFK  393 (443)
T ss_pred             cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcc-----cccceeeeEeecCcHHHHHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999999999999998832     334588999999999999999999999999999


Q ss_pred             ccccccccccCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCCC-CCCC
Q 013113          401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDED-DGEE  448 (449)
Q Consensus       401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~~-~~~~  448 (449)
                      ||||||||+++||||+||.||++++.+|.++|++++++.-+++. ||||
T Consensus       394 krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~~~~~  442 (443)
T COG5023         394 KRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEE  442 (443)
T ss_pred             hhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhhhhcc
Confidence            99999999999999999999999999999999999866554443 4444

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 0.0
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 0.0
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 0.0
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 0.0
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-168
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 7e-96
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 8e-96
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 8e-96
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 9e-96
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-95
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-95
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-95
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-95
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-95
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 8e-89
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 8e-75
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 6e-72
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 5e-50
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 6e-50
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/430 (79%), Positives = 377/430 (87%)
Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
           MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG   D+FNTFFSET AG+
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61  HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLSDNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTIYPSPQVSTA 180
           RVRKL+D CTGLQGFLVF++                  VDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRXXXXXXXXXXX 240
           VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNR           
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 241 XXRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
             RFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
            M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRT+QFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCM+SN TAVAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEK 430
           ARED+AALEK
Sbjct: 421 AREDMAALEK 430
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 2e-12
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 9e-04
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  805 bits (2082), Expect = 0.0
 Identities = 373/451 (82%), Positives = 420/451 (93%), Gaps = 2/451 (0%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
           MRE ISIH+GQAG+Q+GN+CWELYCLEHGI PDG MPSD TIG   D+FNTFFSET AG+
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 RVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
           R+RKL+D CTGLQGFLVF++ GGGTGSG  SLL+ERLSVDYGKKSKL F+IYP+PQVSTA
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
           VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRLISQI+SS+T 
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSS 300
           SLRFDGA+NVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSV EITNA FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPP 360
            M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR++QFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAEGVDDE--DDGEEY 449
           ARED+AALEKDYEEVG + V+ E  ++GEEY
Sbjct: 421 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Length = 36 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Length = 427 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.97
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.97
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.79
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.35
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 96.99
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=3.4e-124  Score=956.87  Aligned_cols=449  Identities=83%  Similarity=1.375  Sum_probs=423.4

Q ss_pred             CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113            1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT   80 (449)
Q Consensus         1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~   80 (449)
                      |||||+||+||||||||.+||+++|.||+|+++|.++.+......++++++||+|++.++|+||||||||||++|++++.
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~   80 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeee
Confidence            99999999999999999999999999999999998876554323467899999999999999999999999999999999


Q ss_pred             cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113           81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD  160 (449)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de  160 (449)
                      |+++++|+|++++++++|||||||+|||+.|+++.|+++|+||+++|+||++|||+++||+|||||||+|+.|+|.|+++
T Consensus        81 g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~e  160 (451)
T 3ryc_A           81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD  160 (451)
T ss_dssp             STTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113          161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT  240 (449)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~  240 (449)
                      ||++.+++++|+|++..++++++|||++|++++|.+++|+++++||++|+++|.+.+++..|+|.++|++||++|+++|+
T Consensus       161 y~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~  240 (451)
T 3ryc_A          161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA  240 (451)
T ss_dssp             TTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhccccccc
Confidence            99999999999999888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhhcCCCCCcccccccccccccccccccccccChhhHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 013113          241 SLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKYMACCLMYR  320 (449)
Q Consensus       241 ~~r~~~~~~~~l~~~~~~L~p~p~~~fl~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R  320 (449)
                      ++||||.+|.||.+|.+|||||||+||++++|+|+++..+..++++++.+|++++|+++|+|++|+|++|+|+++++++|
T Consensus       241 slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~R  320 (451)
T 3ryc_A          241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR  320 (451)
T ss_dssp             HHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCEEEEEEEEE
T ss_pred             ccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCchheehhhcc
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHhhhccCcccccccCCCCceeeecCCCCccCCCCCcccccceeEEeecChhhHHHHHHHHHHHHHHhh
Q 013113          321 GDVVPKDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYA  400 (449)
Q Consensus       321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~  400 (449)
                      |+++++++.+++..++.|++..|++|+|++||+++|+++|..+++.++++...++|+|+|+|+|.+.|+++.+||++||+
T Consensus       321 G~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s~~~lsNsTaI~~~f~rl~~kFd~m~~  400 (451)
T 3ryc_A          321 GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA  400 (451)
T ss_dssp             ESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEEEEEEEEEGGGHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccccceeeEEecCchHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCChhhHHHHHHHHHHHHHHHHHhccCCCCCC--CCCCCC
Q 013113          401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGVDDE--DDGEEY  449 (449)
Q Consensus       401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~li~~Y~~~~~~~~~~~--~~~~~~  449 (449)
                      ||||||||++|||||+||.||+++|.+|+++|++++.+..+++  .+.|||
T Consensus       401 krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~~~~~~~  451 (451)
T 3ryc_A          401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY  451 (451)
T ss_dssp             TTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred             cceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCCcccccccccCC
Confidence            9999999999999999999999999999999999987765433  244443
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 449
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-128
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-127
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-116
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 1e-109
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 5e-93
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 8e-83
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  369 bits (948), Expect = e-128
 Identities = 114/244 (46%), Positives = 164/244 (67%), Gaps = 2/244 (0%)

Query: 1   MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGR 60
           MREI+ I  GQ G Q+G   WE+   EHGI P G    D+ +    +  N +++E +  +
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQ--LERINVYYNEAAGNK 58

Query: 61  HVPRAVFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
           +VPRA+ VDLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD
Sbjct: 59  YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118

Query: 121 RVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTA 180
            VRK S++C  LQGF + +++GGGTGSG+G+LL+ ++  +Y  +    F++ PSP+VS  
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT 240
           VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN L+S  +S +TT
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTT 238

Query: 241 SLRF 244
            LRF
Sbjct: 239 CLRF 242
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.7
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.68
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.67
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.65
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-76  Score=560.15  Aligned_cols=245  Identities=81%  Similarity=1.330  Sum_probs=236.7

Q ss_pred             CEeEEEEecCcchhHHHHHHHHHHHHHhCCCCCCCCCCCCCccccccccccccccCCCCCcCccceeeCCCCceeeeccc
Q 013113            1 MREIISIHIGQAGIQVGNSCWELYCLEHGIHPDGMMPSDNTIGVAHDAFNTFFSETSAGRHVPRAVFVDLEPTVIDEVRT   80 (449)
Q Consensus         1 M~eii~iq~GqcGnqiG~~fw~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~llvD~e~~~i~~i~~   80 (449)
                      |||||+||+||||||||.+||+++++||+++++|....+......+++.++||+|.++++|+||||+||+||++|++++.
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            99999999999999999999999999999999998776655445677899999999999999999999999999999999


Q ss_pred             cccccccCccccccCcccCCCCccccccccchhhHHHHHHHHHhhhhhcCCCCCeeEEeeCCCCccccchhHHHHHhhhh
Q 013113           81 GSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD  160 (449)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~~~~l~e~l~de  160 (449)
                      ++++++|++++++.+++|+|||||+|||..|+++.|+++|.||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus        81 ~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~  160 (245)
T d1tuba1          81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVD  160 (245)
T ss_dssp             GGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHH
T ss_pred             CcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeeEEEecCCCCCcccchhhHHHHHHHHhhhcCCeeEEecChhhHhhhccCCCCCCCCcchhhHHHHHHHhcccc
Q 013113          161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTT  240 (449)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~  240 (449)
                      ||++.+++++|+|+...+++++||||++|+|++|.+++|++++|||++|+++|.+.+++..|+|++||++||+.|+++|+
T Consensus       161 yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via~~ls~~T~  240 (245)
T d1tuba1         161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA  240 (245)
T ss_dssp             TTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             cccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 013113          241 SLRFD  245 (449)
Q Consensus       241 ~~r~~  245 (449)
                      ++||.
T Consensus       241 ~~RF~  245 (245)
T d1tuba1         241 SLRFD  245 (245)
T ss_dssp             TTTSS
T ss_pred             hccCC
Confidence            99983
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure