Citrus Sinensis ID: 013127


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MADPHIQIQTDPPPAQTPLLNNSNQNHTQLPQQQQQENQIPETDLDRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSSGDSSQLRVSNSFGNLEASSPLNSVHMNYSESDLVSLDYVAMPTNTQLASYMCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIVNSN
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHcccccccc
cccccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHEEEHHHHHHHHHHHHHHHHHHHHHcHHHEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHccEEEEcc
madphiqiqtdpppaqtpllnnsnqnhtqlpqqqqqenqipetdlDRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILElsncpgcekgqikDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFvdrhsghmerFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFqttgyggkitfinggdfaaSSVVQVVGIILCLHAATKISHRAQNIASIASRWHALAtcssgdssqlrvsnsfgnleassplnsvhmnysesdlvsldyvamptnTQLASYMCSYHRRQAYVMYLqanpggitiFGWTVDRALINTIFFIELSLVTFVLGKTIVNSN
madphiqiqtdpppaqTPLLNNSNQNHTQLPQQQQQENQIPETDLDRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSSGDSSQLRVSNSFGNLEASSPLNSVHMNYSESDLVSLDYVAMPTNTQLASYMCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTfvlgktivnsn
MADPHIQIQTDPPPAQTPLLNNSnqnhtqlpqqqqqenqIPETDLDRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFvvtgvlvpvvILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSSGDSSQLRVSNSFGNLEASSPLNSVHMNYSESDLVSLDYVAMPTNTQLASYMCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIVNSN
**********************************************RTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATC*****************************YSESDLVSLDYVAMPTNTQLASYMCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIV***
**********************************************RTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSS********************************************TQLASYMCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIVN**
********QTDPPPAQTPLLNNSNQN**************PETDLDRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALA**********RVSNSFGNLEASSPLNSVHMNYSESDLVSLDYVAMPTNTQLASYMCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIVNSN
****HIQIQ*DPPPAQTPLL********QLPQQQQQE***PETDLDRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSS*****************************************PTNTQLASYMCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIVNSN
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MADPHIQIQTDPPPAQTPLLNNSNQNHTQLPQQQQQENQIPETDLDRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSSGDSSQLRVSNSFGNLEASSPLNSVHMNYSESDLVSLDYVAMPTNTQLASYMCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIVNSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
224100051460 predicted protein [Populus trichocarpa] 1.0 0.976 0.715 0.0
225425873443 PREDICTED: uncharacterized protein LOC10 0.984 0.997 0.726 1e-180
356512353458 PREDICTED: uncharacterized protein LOC10 0.984 0.965 0.631 1e-167
356525140466 PREDICTED: uncharacterized protein LOC10 0.984 0.948 0.622 1e-166
255547816433 conserved hypothetical protein [Ricinus 0.902 0.935 0.709 1e-165
356569192452 PREDICTED: uncharacterized protein LOC10 0.973 0.966 0.632 1e-162
449450377444 PREDICTED: uncharacterized protein LOC10 0.984 0.995 0.618 1e-161
18408800456 uncharacterized protein [Arabidopsis tha 0.975 0.960 0.642 1e-159
21536729456 unknown [Arabidopsis thaliana] 0.975 0.960 0.642 1e-159
297838499452 predicted protein [Arabidopsis lyrata su 0.975 0.969 0.644 1e-158
>gi|224100051|ref|XP_002311725.1| predicted protein [Populus trichocarpa] gi|222851545|gb|EEE89092.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/460 (71%), Positives = 374/460 (81%), Gaps = 11/460 (2%)

Query: 1   MADPH-IQIQTD-PPPAQTPLL-----NNSNQNHTQLP----QQQQQENQIPETDLDRTL 49
           MAD H I  QT+  PP  TPLL     NN N N    P    QQQ Q    P  ++++ L
Sbjct: 1   MADAHVIHFQTEHQPPPHTPLLDDDDTNNKNSNSKSTPNHNPQQQNQGISFPNQNINQAL 60

Query: 50  QKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIV 109
           +KLE +L+FLGFN SS+ SF+LSW AF++ GVL+PV +LELS C GC+K QIKDFEL IV
Sbjct: 61  EKLEAYLSFLGFNQSSLKSFLLSWAAFLLVGVLLPVALLELSQCSGCDKYQIKDFELDIV 120

Query: 110 ASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLP 169
           ASQACLAA+SLIC+SHNLRKYGIRKFLFVDR  GH+ RF   YI+QIKDSLRLLILWSLP
Sbjct: 121 ASQACLAAVSLICLSHNLRKYGIRKFLFVDRFGGHISRFSLLYIRQIKDSLRLLILWSLP 180

Query: 170 CFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCNLQVMHF 229
           CFILK ARE IR+ YV HESW  S A+L  LI+SW+Y+STISLSASILFH++CNLQV+HF
Sbjct: 181 CFILKVAREAIRVSYVRHESWLMSTAVLIGLIISWSYVSTISLSASILFHLICNLQVIHF 240

Query: 230 DDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLFQTTGYG 289
           +DYAKLL  + DV+V IEEH RLRYHLSKISHRFRI+L+L+F VVTASQ V+LF+ TGY 
Sbjct: 241 EDYAKLLERDCDVLVFIEEHTRLRYHLSKISHRFRIFLILQFCVVTASQFVTLFRITGYR 300

Query: 290 GKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSSGDSSQL 349
           G IT INGGDFA SS VQVVGIILCLHAATKISHRA  IASIASRWHALATC   D+SQL
Sbjct: 301 GIITGINGGDFAVSSTVQVVGIILCLHAATKISHRALGIASIASRWHALATCGQNDTSQL 360

Query: 350 RVSNSFGNLEASSPLNSVHMNYSESDLVSLDYVAMPTNTQLASYMCSYHRRQAYVMYLQA 409
           RVSNS GNLEA++  NS  +NYSESDL S DY+AMPTN QLASYM SYH+RQA+V+YLQ 
Sbjct: 361 RVSNSTGNLEAANLQNSARINYSESDLESFDYIAMPTNMQLASYMTSYHKRQAFVLYLQN 420

Query: 410 NPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIVNSN 449
           NPGGITIFGWTVDR LINTIFFIELSL+TFVLGKTIV S+
Sbjct: 421 NPGGITIFGWTVDRGLINTIFFIELSLITFVLGKTIVFSS 460




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425873|ref|XP_002266342.1| PREDICTED: uncharacterized protein LOC100240965 [Vitis vinifera] gi|297738355|emb|CBI27556.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512353|ref|XP_003524884.1| PREDICTED: uncharacterized protein LOC100793058 [Glycine max] Back     alignment and taxonomy information
>gi|356525140|ref|XP_003531185.1| PREDICTED: uncharacterized protein LOC100813872 [Glycine max] Back     alignment and taxonomy information
>gi|255547816|ref|XP_002514965.1| conserved hypothetical protein [Ricinus communis] gi|223546016|gb|EEF47519.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356569192|ref|XP_003552789.1| PREDICTED: uncharacterized protein LOC100796689 [Glycine max] Back     alignment and taxonomy information
>gi|449450377|ref|XP_004142939.1| PREDICTED: uncharacterized protein LOC101221462 [Cucumis sativus] gi|449494462|ref|XP_004159552.1| PREDICTED: uncharacterized protein LOC101223780 [Cucumis sativus] Back     alignment and taxonomy information
>gi|18408800|ref|NP_564899.1| uncharacterized protein [Arabidopsis thaliana] gi|332196544|gb|AEE34665.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21536729|gb|AAM61061.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297838499|ref|XP_002887131.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332972|gb|EFH63390.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
TAIR|locus:2008828456 AT1G67570 "AT1G67570" [Arabido 0.897 0.883 0.670 1.7e-139
TAIR|locus:2008046453 AT1G50630 [Arabidopsis thalian 0.881 0.874 0.313 5.5e-54
TAIR|locus:2092424452 AT3G20300 [Arabidopsis thalian 0.873 0.867 0.313 2.4e-53
TAIR|locus:2132045437 MRB1 "AT4G22270" [Arabidopsis 0.861 0.885 0.316 6.7e-49
TAIR|locus:2141481453 AT4G03820 "AT4G03820" [Arabido 0.879 0.871 0.288 1.9e-42
TAIR|locus:2047032414 AT2G21080 "AT2G21080" [Arabido 0.679 0.736 0.281 4.6e-42
TAIR|locus:2008828 AT1G67570 "AT1G67570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1365 (485.6 bits), Expect = 1.7e-139, P = 1.7e-139
 Identities = 273/407 (67%), Positives = 324/407 (79%)

Query:    44 DLDRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFXXXXXXXXXXILELSNCPGCEKGQIKD 103
             DLDRTL+ LE FLT LGFN SS  S VLSW  F          +LEL +C GCE+ Q K 
Sbjct:    46 DLDRTLEWLETFLTLLGFNQSSKQSLVLSWIVFLSIGLVLPVTVLELGHCLGCERYQYKS 105

Query:   104 FELCIVASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLL 163
             FEL IV SQA LA +SL+C+SHNLRK+GIRKFLFVD+ SG M+R   QYIQQI +S+RLL
Sbjct:   106 FELNIVVSQALLAGVSLLCVSHNLRKHGIRKFLFVDQLSGRMDRLKAQYIQQILNSVRLL 165

Query:   164 ILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVVCN 223
              +WSLPCF LK  REIIR+ YV H+  W S AIL ++ILSWTYLSTI L+AS +FH+VCN
Sbjct:   166 AVWSLPCFALKGVREIIRMYYVPHDQPWLSVAILLSMILSWTYLSTIFLAASAMFHLVCN 225

Query:   224 LQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVSLF 283
             LQV+HF+DYAKLL  ES++ + I EHMRLR++LSKISHRFRI+LLL+FLVVTASQ  +LF
Sbjct:   226 LQVIHFEDYAKLLEGESEISLFIYEHMRLRHYLSKISHRFRIFLLLQFLVVTASQFTTLF 285

Query:   284 QTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSS 343
             QTT Y G+IT+INGGDFA S+VVQVVGIILCLHAATKISHRAQ IAS+ASRWHA+ +CSS
Sbjct:   286 QTTAYSGRITYINGGDFAVSAVVQVVGIILCLHAATKISHRAQAIASVASRWHAMMSCSS 345

Query:   344 GDSSQLRVSNSFGNLEASS-PLNSVHMNYSESDLVSLD-YVAMPTNTQLASYMC--SYHR 399
              DS+Q+R S S  +LEA++ P  S  ++ S+SD+ S+D Y+ MP   Q  SYM   SYH+
Sbjct:   346 TDSTQIRASPSGVHLEATTNPPISFPISRSDSDVESMDHYMRMPVTNQFPSYMSMSSYHK 405

Query:   400 RQAYVMYLQANPGGITIFGWTVDRALINTIFFIELSLVTFVLGKTIV 446
             RQA+V+YLQ NPGGITIFGWTVDR LINTIFFIELSLVTFVLGKT+V
Sbjct:   406 RQAFVLYLQMNPGGITIFGWTVDRHLINTIFFIELSLVTFVLGKTVV 452




GO:0005634 "nucleus" evidence=IDA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009888 "tissue development" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010638 "positive regulation of organelle organization" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
TAIR|locus:2008046 AT1G50630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092424 AT3G20300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132045 MRB1 "AT4G22270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141481 AT4G03820 "AT4G03820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047032 AT2G21080 "AT2G21080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00035091001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (443 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
pfam12056398 pfam12056, DUF3537, Protein of unknown function (D 1e-150
>gnl|CDD|221398 pfam12056, DUF3537, Protein of unknown function (DUF3537) Back     alignment and domain information
 Score =  431 bits (1111), Expect = e-150
 Identities = 155/394 (39%), Positives = 228/394 (57%), Gaps = 11/394 (2%)

Query: 49  LQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCI 108
           L+     L ++ F+HSS     LSW+ F +  V VP +   L  C  C+    + F++ +
Sbjct: 6   LRSFRSLLRWVCFDHSSPCGAALSWSVFFLLAVAVPAISHFLLPCRDCDFDHRRPFDVLV 65

Query: 109 VASQACLAAISLICMSHNLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSL 168
             S +  AA+S +C+S   RKYG+RKFLF+D+ S   +R    Y  +IK S RLL  + L
Sbjct: 66  QLSLSAFAAVSFLCLSRWFRKYGLRKFLFLDKLSDDSDRVRLGYTAEIKRSFRLLAYFVL 125

Query: 169 PCFILKTAREI-------IRILYVHHESWWQSAAILFALILSWTYLSTISLSASILFHVV 221
           PCF+L+   +I        +I ++ +     S A    L  SW Y +TI L   +LF ++
Sbjct: 126 PCFLLEAVYKIWWYASGGSQIPFIGNPVLSLSVACTLEL-ASWMYRTTIFLLVCVLFRLI 184

Query: 222 CNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQIVS 281
           C+LQ++  DD+AKL   ESDV  +++EH+R+R  LS ISHRFR ++LL  L+VTASQ  +
Sbjct: 185 CHLQILRLDDFAKLFEGESDVESVLKEHLRIRRQLSIISHRFRKFILLSLLLVTASQFAA 244

Query: 282 LFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATC 341
           L  TT   G++  +NGG+ A  SVV V G+ +CLH+A KI+H+AQ + S+AS+WHA ATC
Sbjct: 245 LLLTTAASGEVNILNGGELALCSVVLVSGLFICLHSAAKITHKAQAVTSLASKWHACATC 304

Query: 342 SSGDSSQLRVSNSFGNLEASSPLNSVHMNYSESDLVSLD-YVAMPTNTQLASY--MCSYH 398
           SS D++      S     AS+ +     + S S   S D    +     + SY    S+ 
Sbjct: 305 SSFDTTVDETPTSVLLPAASNLVLRPVSSSSSSSDESGDEEDDLDNTKIMPSYARTISFQ 364

Query: 399 RRQAYVMYLQANPGGITIFGWTVDRALINTIFFI 432
           +RQA V YL+ N  GIT++G+TVDR  ++TIF I
Sbjct: 365 KRQALVTYLENNRAGITVYGFTVDRTWLHTIFMI 398


This family of transmembrane proteins are functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length. Length = 398

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
PF12056398 DUF3537: Protein of unknown function (DUF3537); In 100.0
PF08395372 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013 97.41
PF02949313 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 A 90.11
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised Back     alignment and domain information
Probab=100.00  E-value=7.7e-166  Score=1245.40  Aligned_cols=387  Identities=47%  Similarity=0.755  Sum_probs=354.8

Q ss_pred             hHHHHhHHHHhhhheecCCCchhhHHHHHHHHHHHHHHhhhhhhhcCCCCCCccCCccchhHHHHHhhHHHHHHHHHhhh
Q 013127           46 DRTLQKLEYFLTFLGFNHSSVLSFVLSWTAFVVTGVLVPVVILELSNCPGCEKGQIKDFELCIVASQACLAAISLICMSH  125 (449)
Q Consensus        46 ~deLr~fr~~L~w~~ldqSs~~~~~~Sw~~F~~l~v~vP~~~~~~~~c~~cd~~~~~~f~~~Vq~s~s~lAavsf~cLS~  125 (449)
                      +||||+||++|+|||+||||++++++||++|+++|++||++++++++|++||++|++|||++||+|||++|+|||+||||
T Consensus         3 ~deL~~fr~~L~w~~~dqSs~~~~~~Sw~~F~ll~v~vP~~~~~~~~c~~cd~~~~~~f~~~Vq~s~s~lAavsf~cLS~   82 (398)
T PF12056_consen    3 RDELRSFRSFLRWCGLDQSSPLSAALSWSVFLLLAVAVPAASHFLLSCPSCDKYHIRPFEKLVQLSQSALAAVSFLCLSH   82 (398)
T ss_pred             hhHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccceeeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhheeeeeecccchh------HHHHHHHH
Q 013127          126 NLRKYGIRKFLFVDRHSGHMERFHYQYIQQIKDSLRLLILWSLPCFILKTAREIIRILYVHHESWW------QSAAILFA  199 (449)
Q Consensus       126 ~~rkyGLRr~LflD~l~~~s~~vr~gY~~~l~~sfrlLa~~vLPcf~~e~a~ki~w~~~~~~~~p~------~s~~~l~~  199 (449)
                      |+||||+|||||+||++|||++||+||++||++|||+|++|+||||++|+|||||||+++..++|+      |..+.+++
T Consensus        83 ~~rkyGlRr~LflD~l~~~s~~vr~gY~~~l~~sfrlLa~~vLPcf~~e~~~ki~~~~~~~~~~P~~~~~~~~~sva~~l  162 (398)
T PF12056_consen   83 FLRKYGLRRFLFLDKLRDDSEEVRRGYTRQLNRSFRLLACWVLPCFLVEAAYKIWWYSSVAVQIPYIGHPSWWNSVACLL  162 (398)
T ss_pred             HhHhcCceeeeeecccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEeeccccCCccCCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999977665555      22333688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcHHHHHhhccCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 013127          200 LILSWTYLSTISLSASILFHVVCNLQVMHFDDYAKLLAMESDVVVLIEEHMRLRYHLSKISHRFRIYLLLEFLVVTASQI  279 (449)
Q Consensus       200 ~l~SW~YrT~ifll~CVLFrLiC~LQiLR~~~~~klfe~~sdv~~il~EH~RIR~qL~~ISHRfR~Fil~~ll~VTaSQf  279 (449)
                      +++||+|||+|||++||||||+|||||||||||+|+||+++||++||+||+|||+||+|||||||+|||+||++||||||
T Consensus       163 ~l~SW~YrT~ifl~~CvLFrLiC~LQiLr~~~~~klfe~~sdv~~il~EH~RiR~qL~~ISHRfR~Fil~~l~~VTaSQf  242 (398)
T PF12056_consen  163 ELASWLYRTTIFLLVCVLFRLICNLQILRFEGYAKLFERDSDVGVILEEHLRIRRQLSKISHRFRIFILLSLLLVTASQF  242 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhheehHhHHHHHccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCcceeeeecCceeehhHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhccCCCCCcccccCCCCCcc
Q 013127          280 VSLFQTTGYGGKITFINGGDFAASSVVQVVGIILCLHAATKISHRAQNIASIASRWHALATCSSGDSSQLRVSNSFGNLE  359 (449)
Q Consensus       280 ~sLl~~t~~~~~inf~~~GdLavcS~vqv~Gl~icL~~AaKITHrAQ~I~siAskWHa~aT~~s~d~~~~~~~~~~~~~~  359 (449)
                      ++||+||++++++||+|+|||||||+|||+|++||||||||||||||+|||+||||||++||+|+|+.+.++++..+..+
T Consensus       243 ~sLl~~t~~~~~inf~~~GdlavcS~vqv~Gl~iCL~~AaKITHrAQ~I~siAskWHa~aTc~s~d~~~~~~p~~~~~~~  322 (398)
T PF12056_consen  243 VSLLQTTRSKGDINFFNAGDLAVCSVVQVSGLFICLHGAAKITHRAQAITSIASKWHACATCSSFDSDQGETPTSDSLSA  322 (398)
T ss_pred             HHHHHHhccccceeEeeccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheecccccccccCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999866544433332222


Q ss_pred             CCCCCCCcCCCCCCCcccccc-cccCCCcccchhh--hhhhHhHHHHHHHhhcCCCceEEEEEeehhhhHHHHHHH
Q 013127          360 ASSPLNSVHMNYSESDLVSLD-YVAMPTNTQLASY--MCSYHRRQAYVMYLQANPGGITIFGWTVDRALINTIFFI  432 (449)
Q Consensus       360 ~~~~~~~~~~d~~~~d~ds~d-~~~~~~~~~~~~~--~~SfqkRQAlVtYLq~N~~GITvfGf~lDR~~L~TIF~~  432 (449)
                      +.++......++++||+|+.| +.+.+++++.|+|  |+||||||||||||||||||||||||+|||||||||||+
T Consensus       323 ~~~~~~~~~~~~~~sd~es~d~~~~~~~~~~~~~~~~~~SfqKRQALVtYLq~N~aGITvfGf~lDR~~LhTIF~i  398 (398)
T PF12056_consen  323 AANPFPSAGINSSSSDDESGDEEDDLDNTKQLPSYADMISFQKRQALVTYLQNNRAGITVFGFVLDRGLLHTIFMI  398 (398)
T ss_pred             ccccccCCCCCCCccchhhcccCCCCCccccccccchhHHHHHHHHHHHHHhcCCCCeEEEEEEeehHHHHHHhhC
Confidence            222223333344444444443 5556699999999  999999999999999999999999999999999999985



This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.

>PF08395 7tm_7: 7tm Chemosensory receptor; InterPro: IPR013604 This family includes a number of gustatory and odorant receptors mainly from insect species such as Anopheles gambiae (African malaria mosquito) and Drosophila melanogaster (Fruit fly) Back     alignment and domain information
>PF02949 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 All known members of this group are seven-transmembrane proteins that are candidate odorant receptors in Drosophila Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 57.9 bits (139), Expect = 5e-09
 Identities = 49/320 (15%), Positives = 90/320 (28%), Gaps = 87/320 (27%)

Query: 19  LLNNSNQNHTQLPQQQQQENQIPETDLDRTLQKLEYFLTFLGFNHS-SVLSFVLS---WT 74
           LL   + N T             +  +     +L   L    + +   VL  V +   W 
Sbjct: 205 LLYQIDPNWTSRSDHSSN----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 75  AF-------------VVTGVLVPVVILELS---NCPGCEKGQIKD-FELCI------VAS 111
           AF              VT  L       +S   +       ++K      +      +  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 112 QACLA---AISLI--------CMSHNLRKYGIRKF-----LFVDRHSGHMERFHYQYIQQ 155
           +        +S+I            N +     K        ++       R  +  +  
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 156 IKDSLR-----LLILWSLPCFILKTAREIIRILYVHHESWWQSAAILFALILSWTYLSTI 210
              S       L ++W           +++ ++   H+          +L+      STI
Sbjct: 381 FPPSAHIPTILLSLIWFD-----VIKSDVMVVVNKLHKY---------SLVEKQPKESTI 426

Query: 211 SLSASILFHVVC---NLQVMH---FDDYAKLLAMESDVVVLIEE------HMRLRYHLSK 258
           S+  SI   +     N   +H    D Y      +SD ++          H  + +HL  
Sbjct: 427 SIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKN 483

Query: 259 ISH-----RFR-IYLLLEFL 272
           I H      FR ++L   FL
Sbjct: 484 IEHPERMTLFRMVFLDFRFL 503


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00