Citrus Sinensis ID: 013129

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MGDTADQNQRPLLTDKDDDRENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPFSSVVA
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHHEEEHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEcc
mgdtadqnqrplltdkdddrennnkdltSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLlpfyvfatpllkllgqpddvaeLSGTVAVWMIplhfsfafqfpltrFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLygyaafggcpltwsgfstqaFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVAnelgagngkgaGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGvgvtsavpfssvva
mgdtadqnqrplltdkdddrennnkdltsrvwieskklwqIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAvpfssvva
MGDTADQNQRPLLTdkdddrennnkdLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVlflfcflllpfyvfATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPFSSVVA
****************************SRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPF*****
**************************LTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPFSSVVA
MGDTADQNQRPLLTDKDDDRENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPFSSVVA
*********************NNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPFSSVVA
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
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MGDTADQNQRPLLTDKDDDRENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVGVTSAVPFSSVVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query449 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.962 0.852 0.427 6e-93
Q9LUH2477 MATE efflux family protei no no 0.959 0.903 0.344 2e-64
Q9LUH3469 MATE efflux family protei no no 0.935 0.895 0.342 1e-62
Q8GXM8476 MATE efflux family protei no no 0.928 0.876 0.303 2e-56
Q9SIA5476 MATE efflux family protei no no 0.906 0.855 0.308 5e-54
Q9SIA4476 MATE efflux family protei no no 0.966 0.911 0.312 4e-53
Q9SIA3476 MATE efflux family protei no no 0.966 0.911 0.300 2e-51
Q9SIA1477 MATE efflux family protei no no 0.937 0.882 0.309 2e-50
Q8RWF5483 MATE efflux family protei no no 0.902 0.838 0.319 1e-49
A1L1P9 590 Multidrug and toxin extru no no 0.953 0.725 0.286 3e-43
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  341 bits (875), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 195/456 (42%), Positives = 281/456 (61%), Gaps = 24/456 (5%)

Query: 4   TADQNQRPLLTDKDDDRENNNKD--------------LTSRVWI-----ESKKLWQIVGP 44
           ++ +   PLLT    D +   +               +T R W+     ESK LW + G 
Sbjct: 2   SSTETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGA 61

Query: 45  AIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAF 104
           +I   + +Y ++ +T  F GHLG ++LA  SIA   I G  +G++LGMASA++T+CGQA+
Sbjct: 62  SIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAY 121

Query: 105 GAKRYHMLGIYMQRSWIVLFLFCFLLLPF-YVFATPLLKLLGQPDDVAELSGTVAVWMIP 163
           GA++Y  +GI  QR+ +VL L   + L F Y ++ P+LK +GQ   +A      A  MIP
Sbjct: 122 GARQYSSMGIICQRA-MVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIP 180

Query: 164 LHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDIS 223
             ++FA   P+ RFLQ Q     +A++SL   L++ L +WL   VLDFG++GAAL L  S
Sbjct: 181 QIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFS 240

Query: 224 WWVLCF--GLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILIL 281
           WW+L    G+Y   +   C  TW+GFST+AF G+W Y KL+VA+ VMLCLE WY + L++
Sbjct: 241 WWLLVAVNGMYILMS-PNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVI 299

Query: 282 MTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSV 341
           ++G L N T+++DA+S+CM    W M   L   AA  VRV+NELGAGN + A  + +V  
Sbjct: 300 ISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVN 359

Query: 342 AQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAI 401
             + LI  +LCVI+++    ++  FTS  +V+A V  L  LLA++I LN +QP+LSGVAI
Sbjct: 360 ITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAI 419

Query: 402 GSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGVG 437
           GSGWQA VAY+NL  YY+IGLP+G ++G+   LGV 
Sbjct: 420 GSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVA 455
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
224067013492 predicted protein [Populus trichocarpa] 0.968 0.884 0.797 0.0
356508053503 PREDICTED: protein TRANSPARENT TESTA 12 0.968 0.864 0.747 0.0
224067011486 predicted protein [Populus trichocarpa] 0.964 0.890 0.735 0.0
255545860497 multidrug resistance pump, putative [Ric 0.933 0.843 0.793 0.0
350534468447 ripening regulated protein DDTFR18 [Sola 0.959 0.964 0.736 0.0
359492469490 PREDICTED: protein TRANSPARENT TESTA 12- 0.968 0.887 0.752 0.0
302142014521 unnamed protein product [Vitis vinifera] 0.968 0.834 0.752 0.0
224097194488 predicted protein [Populus trichocarpa] 0.957 0.881 0.740 0.0
449469827474 PREDICTED: protein TRANSPARENT TESTA 12- 0.926 0.877 0.742 0.0
356497726491 PREDICTED: protein TRANSPARENT TESTA 12- 0.955 0.873 0.710 1e-178
>gi|224067013|ref|XP_002302326.1| predicted protein [Populus trichocarpa] gi|222844052|gb|EEE81599.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/435 (79%), Positives = 380/435 (87%)

Query: 2   GDTADQNQRPLLTDKDDDRENNNKDLTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQA 61
           GD       P      D  + N   L SRVW E+KKLW+IVGPAIFSR+++++MNIITQA
Sbjct: 8   GDDLHDTLLPDDPVNHDVGQENQDPLASRVWTETKKLWEIVGPAIFSRVATFSMNIITQA 67

Query: 62  FAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWI 121
           FAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWI
Sbjct: 68  FAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWI 127

Query: 122 VLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQ 181
           VLF  CFLLLPFYVFA PLLK LGQPDDVAE SG VA+W+IPLHFSFAFQFPL RFLQ Q
Sbjct: 128 VLFFCCFLLLPFYVFAAPLLKFLGQPDDVAEQSGLVALWLIPLHFSFAFQFPLQRFLQSQ 187

Query: 182 LKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCP 241
           LKNQVIAW+SL  L VNVLTSWL VYVLDFGV+GAA+ALDISWWV+  GL+ Y + G CP
Sbjct: 188 LKNQVIAWISLASLGVNVLTSWLLVYVLDFGVIGAAIALDISWWVIVIGLFIYTSCGWCP 247

Query: 242 LTWSGFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMS 301
            TW+GFS QAF GLWE+ KLS A+GVMLCLENWYYRILILMTGY KNATLAVDALSVCMS
Sbjct: 248 STWTGFSAQAFCGLWEFVKLSAASGVMLCLENWYYRILILMTGYFKNATLAVDALSVCMS 307

Query: 302 INGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDK 361
           INGW++MIPLAF AATGVRV+NELGAGNGKGA FATIVSV QS+++GLI CVIIM LH+K
Sbjct: 308 INGWEIMIPLAFFAATGVRVSNELGAGNGKGAKFATIVSVVQSSIVGLIFCVIIMSLHNK 367

Query: 362 VALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIG 421
           +ALIFTSS+ V+ EVD L+ LLAITILLNSVQPVLSGVA+G+GWQA VAY+NLGCYYIIG
Sbjct: 368 IALIFTSSSSVIQEVDNLALLLAITILLNSVQPVLSGVAVGAGWQALVAYVNLGCYYIIG 427

Query: 422 LPLGFLIGWVFKLGV 436
           LPLGFLIGWVFKLGV
Sbjct: 428 LPLGFLIGWVFKLGV 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356508053|ref|XP_003522776.1| PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max] Back     alignment and taxonomy information
>gi|224067011|ref|XP_002302325.1| predicted protein [Populus trichocarpa] gi|222844051|gb|EEE81598.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255545860|ref|XP_002513990.1| multidrug resistance pump, putative [Ricinus communis] gi|223547076|gb|EEF48573.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|350534468|ref|NP_001234398.1| ripening regulated protein DDTFR18 [Solanum lycopersicum] gi|12231296|gb|AAG49032.1|AF204785_1 ripening regulated protein DDTFR18 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449469827|ref|XP_004152620.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449513094|ref|XP_004164229.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query449
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.930 0.860 0.682 5.6e-155
TAIR|locus:2142544489 AT5G10420 [Arabidopsis thalian 0.922 0.846 0.633 9.3e-146
TAIR|locus:2172477491 AT5G44050 "AT5G44050" [Arabido 0.939 0.859 0.602 2.6e-143
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.939 0.854 0.505 2.9e-110
TAIR|locus:2037980494 AT1G33090 "AT1G33090" [Arabido 0.939 0.854 0.505 4.3e-109
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.908 0.842 0.479 4.4e-107
TAIR|locus:2037960494 AT1G33080 "AT1G33080" [Arabido 0.939 0.854 0.496 4e-106
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.926 0.835 0.453 1.6e-102
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.926 0.832 0.448 4.2e-102
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.897 0.743 0.472 1.1e-101
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 286/419 (68%), Positives = 339/419 (80%)

Query:    27 LTSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNF 86
             L  R+ +E+KKLWQIVGPAIFSR+++Y+M +ITQAFAGHLGD+ELAAISI N V VGFNF
Sbjct:    30 LKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELAAISIVNNVTVGFNF 89

Query:    87 GLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLGQ 146
             GLLLGMASALETLCGQAFGAK+YHMLG+YMQRSWIV               TP+LK LGQ
Sbjct:    90 GLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLPTYIFTTPVLKFLGQ 149

Query:   147 PDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFV 206
             PDD+AELSG VA+W+IPLHF+F   FPL RFLQCQLKN+V A+ + V L+V++L  WLFV
Sbjct:   150 PDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVALVVHILVCWLFV 209

Query:   207 YVLDFGVVGAALALDISWWVLCFGLYGYAAFGGCPLTWSGFSTQAFSGLWEYTKLSVAAG 266
               L  GVVG    + ISWWV    L  Y+  GGCPLTW+G S++A +GLWE+ KLS ++G
Sbjct:   210 DGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSG 269

Query:   267 VMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELG 326
             VMLCLENWYYRILI+MTG L+NA +AVD+LS+CM+INGW+MMIPLAF A TGVRVANELG
Sbjct:   270 VMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAINGWEMMIPLAFFAGTGVRVANELG 329

Query:   327 AGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAIT 386
             AGNGKGA FATIVSV QS +IGL   V+IM+LH+++A IF+SS  VL  V+KLS LLA T
Sbjct:   330 AGNGKGARFATIVSVTQSLIIGLFFWVLIMLLHNQIAWIFSSSVAVLDAVNKLSLLLAFT 389

Query:   387 ILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGV-GVTSAVPF 444
             +LLNSVQPVLSGVA+GSGWQ+ VAYINLGCYY IG+PLGFL+GW FKLGV G+   + F
Sbjct:   390 VLLNSVQPVLSGVAVGSGWQSYVAYINLGCYYCIGVPLGFLMGWGFKLGVMGIWGGMIF 448
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_II0465
hypothetical protein (492 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-146
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-50
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 6e-49
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-39
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-29
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 6e-29
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 1e-28
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 7e-27
pfam01554161 pfam01554, MatE, MatE 4e-26
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 9e-24
pfam01554161 pfam01554, MatE, MatE 3e-23
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 7e-23
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 9e-20
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-17
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 5e-17
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 8e-17
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 9e-10
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-09
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-09
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 2e-08
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-08
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 5e-07
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 2e-06
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-06
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 1e-05
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 2e-05
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-05
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 4e-05
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-04
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 3e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 4e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 7e-04
COG0728518 COG0728, MviN, Uncharacterized membrane protein, p 0.001
PRK10367441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 0.002
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  423 bits (1091), Expect = e-146
 Identities = 172/404 (42%), Positives = 260/404 (64%), Gaps = 2/404 (0%)

Query: 34  ESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMA 93
           E+KKL ++  P + + +  Y++++++  F GHLG +ELAA S+A++      F +LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 94  SALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAEL 153
           SAL+TLCGQAFGAK Y ++G+Y+QR+ ++L L C  +   ++   P+L LLGQ  ++A L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 154 SGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVYVLDFGV 213
           +G    W+IP  F++A   PL R+LQ Q     + ++SLV LL+N+L ++L V+VL  G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 214 VGAALALDISWWVLCFGLYGYAAF-GGCPLTWSGFSTQAFSGLWEYTKLSVAAGVMLCLE 272
           +GAALA  IS+W++   L  Y  F  G   TW GFS +AF G   + KL++ + +MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 273 NWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKG 332
            W + IL+L+ G L   T+A+ A S+C++      MIPL    A  VRV NELGAGN K 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 333 AGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSV 392
           A  A IV++  S +IG+++ +++++L D  A +FTS  +V+A V  L  +LA+  + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 393 QPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIGWVFKLGV 436
           Q VLSGV  G G Q   AY+NL  YY+IGLP+G L+ +V  LG+
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGL 403

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 449
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.98
PRK10459492 colanic acid exporter; Provisional 99.97
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
PRK00187464 multidrug efflux protein NorA; Provisional 99.89
PRK01766456 multidrug efflux protein; Reviewed 99.87
PRK10189478 MATE family multidrug exporter; Provisional 99.87
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.87
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.85
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.84
TIGR01695502 mviN integral membrane protein MviN. This model re 99.84
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.82
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.77
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.77
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.75
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.73
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.73
PRK10459492 colanic acid exporter; Provisional 99.72
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.71
PRK15099416 O-antigen translocase; Provisional 99.71
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.65
COG2244480 RfbX Membrane protein involved in the export of O- 99.62
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.24
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.08
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.04
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.02
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.68
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.5
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.2
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.41
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.38
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.37
COG4267467 Predicted membrane protein [Function unknown] 97.34
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.27
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-54  Score=417.41  Aligned_cols=414  Identities=26%  Similarity=0.372  Sum_probs=392.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 013129           31 VWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYH  110 (449)
Q Consensus        31 ~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~  110 (449)
                      .++..|+++++++|.+++++.+.+++.+|++++||+|++++++.+++.++..+ ...+..|++.+..+.+||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence            56689999999999999999999999999999999999999999999999998 88899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHHHH
Q 013129          111 MLGIYMQRSWIVLFLFCFLLLP-FYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAW  189 (449)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  189 (449)
                      ++++..++++.++++.+++..+ .+.+.++++.+++.+++..+.+.+|+++..++.++..+...+.+.+|+.||+|.++.
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            9999999999999999977666 689999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cC-cccchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCCchhhhhchHHHHHHHHHH
Q 013129          190 VSLVGLLVNVLTSWLFVYV-LD-FGVVGAALALDISWWVLCFGLYGYAAFGGC--PLTWSGFSTQAFSGLWEYTKLSVAA  265 (449)
Q Consensus       190 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~  265 (449)
                      .+.++.++|+++|++++++ ++ +|+.|+++||++++.+.+++..++++|++.  .....+..+.+++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999988752  3333334355567899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 013129          266 GVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQST  345 (449)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~  345 (449)
                      ++++......+...+.+++++|  ++.+|+|+++.++.++.++++.+++++..|.+++++|+||+|++|+..+.+++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  88999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Q 013129          346 LIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLG  425 (449)
Q Consensus       346 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  425 (449)
                      .+++..+++++++++++.++|++|+|+.+.+..++++.+..+++++.+.+..+++|+.||+|.++..++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-hcccchhhhhccccccc
Q 013129          426 FLIGWV-FKLGVGVTSAVPFSSVV  448 (449)
Q Consensus       426 ~~l~~~-~~~~~~~~~a~~~s~~~  448 (449)
                      +++.++ +|..+ +|+++..++.+
T Consensus       409 ~~l~~~~~g~~G-vw~~~~~~~~~  431 (455)
T COG0534         409 YLLGFFFLGLAG-VWIGFPLSLIL  431 (455)
T ss_pred             HHHhhhcccchH-HHHHHHHHHHH
Confidence            999999 88888 99999988764

>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 5e-17
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 179/424 (42%), Gaps = 42/424 (9%)
Query: 29  SRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTV---IVGFN 85
            R   E+  L ++  P + + ++   M  +    AG +  +++AA+SIA ++    + F 
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64
Query: 86  FGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVXXXXXXXXXXXXXXATPLLKLLG 145
            GLL+    AL  +  Q  GA R H +   + +  I+              + P++ +L 
Sbjct: 65  VGLLM----ALVPVVAQLNGAGRQHKIPFEVHQGLILALLV----------SVPIIAVLF 110
Query: 146 QPD------DVAELSGTVAV-------WMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSL 192
           Q        DV E   T  V       + +P +  F      T  +       VI ++  
Sbjct: 111 QTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFI-- 168
Query: 193 VGLLVNVLTSWLFVY----VLDFGVVGAALALDISWWVLCFGLYGYAAFG---GCPLTWS 245
            GLL+N+  +W+FVY      + G VG  +A  I +W++   L  Y            + 
Sbjct: 169 -GLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227
Query: 246 GFSTQAFSGLWEYTKLSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGW 305
            F       L    +L       L  E   + ++ L+   L +  +A  A  V ++ +  
Sbjct: 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSL 285
Query: 306 QMMIPLAFLAATGVRVANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALI 365
             M P++  AA  +RV ++LG  + KGA  A  V +        I  ++ ++  +++AL+
Sbjct: 286 VFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALL 345
Query: 366 FTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLG 425
           +T +  V+A   +L    AI   +++VQ V +G   G      + +     Y+++GLP G
Sbjct: 346 YTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTG 405
Query: 426 FLIG 429
           +++G
Sbjct: 406 YILG 409

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query449
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-69
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  227 bits (580), Expect = 1e-69
 Identities = 87/422 (20%), Positives = 179/422 (42%), Gaps = 13/422 (3%)

Query: 28  TSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFG 87
             R   E+  L ++  P + + ++   M  +    AG +  +++AA+SIA ++ +     
Sbjct: 4   VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-IL 62

Query: 88  LLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQP 147
             +G+  AL  +  Q  GA R H +   + +  I+  L    ++        +++ +   
Sbjct: 63  FGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVE 122

Query: 148 DDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVIAWVSLVGLLVNVLTSWLFVY 207
           + +A  +      +I    ++     L  F       +    +  +GLL+N+  +W+FVY
Sbjct: 123 EAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVY 182

Query: 208 ----VLDFGVVGAALALDISWWVLCFGLYGYAAFGG---CPLTWSGFSTQAFSGLWEYTK 260
                 + G VG  +A  I +W++   L  Y            +  F       L    +
Sbjct: 183 GKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242

Query: 261 LSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVR 320
           L       L  E   + ++ L+   L +  +A  A  V ++ +    M P++  AA  +R
Sbjct: 243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIR 300

Query: 321 VANELGAGNGKGAGFATIVSVAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLS 380
           V ++LG  + KGA  A  V +        I  ++ ++  +++AL++T +  V+A   +L 
Sbjct: 301 VGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLL 360

Query: 381 FLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYIIGLPLGFLIG---WVFKLGVG 437
              AI   +++VQ V +G   G      + +     Y+++GLP G+++G   W+ +  +G
Sbjct: 361 LFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLG 420

Query: 438 VT 439
             
Sbjct: 421 AK 422

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query449
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.86
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.9e-48  Score=379.54  Aligned_cols=417  Identities=20%  Similarity=0.333  Sum_probs=383.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 013129           28 TSRVWIESKKLWQIVGPAIFSRISSYTMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAK  107 (449)
Q Consensus        28 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~  107 (449)
                      +...++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++..+ ...+..|++++..+.+++++|++
T Consensus         4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~   82 (460)
T 3mkt_A            4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAG   82 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence            34567789999999999999999999999999999999999999999999999877 67788999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhchhhHH
Q 013129          108 RYHMLGIYMQRSWIVLFLFCFLLLPFYVFATPLLKLLGQPDDVAELSGTVAVWMIPLHFSFAFQFPLTRFLQCQLKNQVI  187 (449)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  187 (449)
                      |+++.++..++++.+....+++..+++.+.++++.+++.+++..+.+..|+++..++.++..+.....+.+|+.||++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (460)
T 3mkt_A           83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA  162 (460)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            99999999999999999999887777788888888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-c---CcccchhHHHHHHHHHHHHHHHHHHHHhcccccc---ccCCchhhhhchHHHHH
Q 013129          188 AWVSLVGLLVNVLTSWLFVYV-L---DFGVVGAALALDISWWVLCFGLYGYAAFGGCPLT---WSGFSTQAFSGLWEYTK  260 (449)
Q Consensus       188 ~~~~~~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  260 (449)
                      +..++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..++.+|++...+   ++++.+.+++..|++++
T Consensus       163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  242 (460)
T 3mkt_A          163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR  242 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence            999999999999999999975 4   6899999999999999999988888876632211   12233445677899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 013129          261 LSVAAGVMLCLENWYYRILILMTGYLKNATLAVDALSVCMSINGWQMMIPLAFLAATGVRVANELGAGNGKGAGFATIVS  340 (449)
Q Consensus       261 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~  340 (449)
                      +++|.+++++...+...+++.+++.++  +.++++|+++.++.++...+..+++++..|.+++++|++|.|+.++..+++
T Consensus       243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~  320 (460)
T 3mkt_A          243 LGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG  320 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999999999999999999999999985  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhHhhhhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 013129          341 VAQSTLIGLILCVIIMILHDKVALIFTSSNDVLAEVDKLSFLLAITILLNSVQPVLSGVAIGSGWQATVAYINLGCYYII  420 (449)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  420 (449)
                      .++...++++.++++.++++++..+|++|+++++.+.+++++++++.++.+++.+..+++++.||+|.+++.++.+.|++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  400 (460)
T 3mkt_A          321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVL  400 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888999999999999999999999999999999999999999999998899


Q ss_pred             HHHHHHHHHHh-------hcccchhhhhccccccc
Q 013129          421 GLPLGFLIGWV-------FKLGVGVTSAVPFSSVV  448 (449)
Q Consensus       421 ~i~~~~~l~~~-------~~~~~~~~~a~~~s~~~  448 (449)
                      ++|+.+++.+.       +|..| +|+|+.+++++
T Consensus       401 ~i~l~~~l~~~~~~~~~~~G~~G-~~~a~~~~~~~  434 (460)
T 3mkt_A          401 GLPTGYILGMTNWLTEQPLGAKG-FWLGFIIGLSA  434 (460)
T ss_dssp             HHHHHHHHHHHHTSSCCSSHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccccccCchh-HHHHHHHHHHH
Confidence            99999999998       66666 99999887653
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00