Citrus Sinensis ID: 013153


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MGKDYLYPPHSIAKKLLPWTFYAVLSVAIFRLYLYPLHLYFHSASDQLPHTKSLIITSSSSASSSTSSLSLTSSSLAQEKERADHDDETPCDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHFEGEWDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEALDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVIRKWQHQSRREE
cccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccccccEEEccccccEEEEEEEEccEEEEEEcccccccccccccccccccccccccccHHHHHccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcc
cccccccccccHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHccccccEEEEcccccEEEEEEccccEEEEEEEccEEEEEcccccccccccEEEEccccHHHHHHcccccEEEEEccEEEEcccEEEcccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHcccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHcccccHccc
mgkdylypphsiakkllpWTFYAVLSVAIFRLYLYPLhlyfhsasdqlphtksliitssssassstsslsltsSSLAqekeradhddetpcdytigkwvhdkmgplyngttcgtikegqncithgrpdlgylywrwkprlcklprfdpnafLDFLRNKHLAFVGDSMARNQLESLLCMLstvsvpnlvyrdgednkfrrwhfdahnvtvSVYWSpflvkgveksktgpdhnklyvDHVDERWAADLDQIDMIVLSVghwflhpavylegdsvlgchycpglnqteIGFYDVLRKALKTTLKTITerrgssgdfIDVFlttfspshfegewdkagacpkttpykegEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLealdvtklslmrpdghpgpymypnpfangvqehvqndcvhwclpgpidtWNQILLEVIRKWQHQSRREE
MGKDYLYPPHSIAKKLLPWTFYAVLSVAIFRLYLYPLHLYFHSASDQLPHTKSLIITSsssassstsslsLTSSSLAqekeradhddetpCDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGveksktgpdhnKLYVDHVDERWAADLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTiterrgssgdfiDVFLTTfspshfegewdkagacpkttpYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEALDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVIRKWqhqsrree
MGKDYLYPPHSIAKKLLPWTFYAVLSVAIFRLYLYPLHLYFHSASDQLPHTKsliitssssassstsslsltssslaQEKERADHDDETPCDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHFEGEWDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEALDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVIRKWQHQSRREE
****YLYPPHSIAKKLLPWTFYAVLSVAIFRLYLYPLHLYFHSAS*********************************************CDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHFEGEWDKAGAC***********************************KQFKGLRLEALDVTKLSLMRP*GHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVIRKWQ*******
*************KKLLPWTFYAVLSVAIFRLYLYPLHLYF**************************************************DYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHFEGEWDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEALDVTKLSLMRPDGHPGPYMY*************NDCVHWCLPGPIDTWNQILLE*************
MGKDYLYPPHSIAKKLLPWTFYAVLSVAIFRLYLYPLHLYFHSASDQLPHTKSLII********************************TPCDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHFEGEWDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEALDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVIRK*********
***DYLYPPHSIAKKLLPWTFYAVLSVAIFRLYLYPLHL*************************************************TPCDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHFEGEWDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEALDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVIRKW********
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGKDYLYPPHSIAKKLLPWTFYAVLSVAIFRLYLYPLHLYFHSASDQLPHTKSLIITSSSSASSSTSSLSLTSSSLAQEKERADHDDETPCDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHFEGEWDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEALDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVIRKWQHQSRREE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
224102011429 predicted protein [Populus trichocarpa] 0.928 0.969 0.711 0.0
255581180432 conserved hypothetical protein [Ricinus 0.948 0.983 0.704 0.0
225424775439 PREDICTED: uncharacterized protein LOC10 0.950 0.970 0.703 0.0
356501459440 PREDICTED: uncharacterized protein LOC10 0.953 0.970 0.706 0.0
356497953440 PREDICTED: uncharacterized protein LOC10 0.953 0.970 0.706 0.0
224108125425 predicted protein [Populus trichocarpa] 0.919 0.969 0.675 1e-178
356524073431 PREDICTED: uncharacterized protein LOC10 0.926 0.962 0.656 1e-170
296086496415 unnamed protein product [Vitis vinifera] 0.897 0.968 0.662 1e-170
449434887444 PREDICTED: uncharacterized protein LOC10 0.939 0.948 0.643 1e-170
357486031444 hypothetical protein MTR_5g035070 [Medic 0.957 0.966 0.678 1e-169
>gi|224102011|ref|XP_002312510.1| predicted protein [Populus trichocarpa] gi|222852330|gb|EEE89877.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/440 (71%), Positives = 364/440 (82%), Gaps = 24/440 (5%)

Query: 9   PHSIAKKLLPWTFYAVLSVAIFRLYLYPLHLYFHSASDQLPHTKSLIITSSSSASSSTSS 68
           P S+AKKL+PWTFYA++ + +FRLY YP  L+         +  + I+TSSSS+ SS++ 
Sbjct: 14  PFSLAKKLIPWTFYAMIPLVLFRLYFYPYPLH---------NITTPILTSSSSSVSSSTP 64

Query: 69  LSLTSSSLAQEKERADHDDETPCDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPD 128
                             +ET CDYT GKWV DK GPLYNG+ CGTIKEGQNCI HGRPD
Sbjct: 65  FVA---------------EETSCDYTTGKWVRDKRGPLYNGSACGTIKEGQNCIAHGRPD 109

Query: 129 LGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLV 188
           +GYLYWRWKP+ CKLPRF+PN FL  LRNKHLAFVGDSMARNQLESLLCMLS+ S PNLV
Sbjct: 110 MGYLYWRWKPKHCKLPRFEPNTFLQLLRNKHLAFVGDSMARNQLESLLCMLSSASAPNLV 169

Query: 189 YRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQ 248
           YRDG+DNKFRRW+F++HN+ +SVYWSPFLVKGVEKS TGP+HN+LY+DHVDERWAAD++ 
Sbjct: 170 YRDGDDNKFRRWYFESHNINISVYWSPFLVKGVEKSNTGPNHNQLYLDHVDERWAADMNG 229

Query: 249 IDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRG 308
           IDMIVLS+GHWFLHPAVY EGD VLGCHYCPGLN TEIGFYDVLRKA+KTTLK + +R+G
Sbjct: 230 IDMIVLSIGHWFLHPAVYYEGDQVLGCHYCPGLNHTEIGFYDVLRKAIKTTLKALIDRKG 289

Query: 309 SSGDFIDVFLTTFSPSHFEGEWDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAK 368
           ++ + I+ F+TTFSP+HFEG+WDK GACPKT PYKEG+K LEGMDA+MR IEVEEVE AK
Sbjct: 290 ANSNGINAFVTTFSPAHFEGDWDKLGACPKTKPYKEGDKALEGMDADMRQIEVEEVEAAK 349

Query: 369 ENAKQFKGLRLEALDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDT 428
            N+ Q +  RLEALDVT LSLMRPDGHPGPYM+P PFANGV E VQNDCVHWCLPGPIDT
Sbjct: 350 MNSTQLEKFRLEALDVTSLSLMRPDGHPGPYMHPFPFANGVTERVQNDCVHWCLPGPIDT 409

Query: 429 WNQILLEVIRKWQHQSRREE 448
           WN+ILLEVI+KW ++SRREE
Sbjct: 410 WNEILLEVIKKWDYESRREE 429




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581180|ref|XP_002531403.1| conserved hypothetical protein [Ricinus communis] gi|223528996|gb|EEF30987.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225424775|ref|XP_002266929.1| PREDICTED: uncharacterized protein LOC100241586 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356501459|ref|XP_003519542.1| PREDICTED: uncharacterized protein LOC100776316 [Glycine max] Back     alignment and taxonomy information
>gi|356497953|ref|XP_003517820.1| PREDICTED: uncharacterized protein LOC100801798 [Glycine max] Back     alignment and taxonomy information
>gi|224108125|ref|XP_002314730.1| predicted protein [Populus trichocarpa] gi|222863770|gb|EEF00901.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356524073|ref|XP_003530657.1| PREDICTED: uncharacterized protein LOC100775716 [Glycine max] Back     alignment and taxonomy information
>gi|296086496|emb|CBI32085.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434887|ref|XP_004135227.1| PREDICTED: uncharacterized protein LOC101210982 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357486031|ref|XP_003613303.1| hypothetical protein MTR_5g035070 [Medicago truncatula] gi|355514638|gb|AES96261.1| hypothetical protein MTR_5g035070 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
TAIR|locus:2020628416 TBL27 "TRICHOME BIREFRINGENCE- 0.779 0.838 0.644 8.8e-134
TAIR|locus:2035342456 TBL25 "AT1G01430" [Arabidopsis 0.799 0.785 0.450 1.6e-86
TAIR|locus:2146062526 TBL21 "AT5G15890" [Arabidopsis 0.752 0.640 0.446 6.4e-83
TAIR|locus:2125048442 TBL26 "AT4G01080" [Arabidopsis 0.741 0.751 0.452 1.3e-82
TAIR|locus:2128489430 TBL24 "AT4G23790" [Arabidopsis 0.763 0.795 0.435 1.1e-78
TAIR|locus:2136113432 TBL23 "AT4G11090" [Arabidopsis 0.776 0.805 0.428 3.4e-77
TAIR|locus:2146077426 TBL19 "AT5G15900" [Arabidopsis 0.763 0.802 0.418 1e-75
TAIR|locus:2091388414 TBL22 "AT3G28150" [Arabidopsis 0.756 0.818 0.419 1.7e-75
TAIR|locus:2153077501 YLS7 "AT5G51640" [Arabidopsis 0.787 0.704 0.381 2e-63
TAIR|locus:2138043533 TBL18 "AT4G25360" [Arabidopsis 0.765 0.643 0.373 3.8e-62
TAIR|locus:2020628 TBL27 "TRICHOME BIREFRINGENCE-LIKE 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
 Identities = 236/366 (64%), Positives = 284/366 (77%)

Query:    78 QEKERADH-DDETPCDYTIGKWVHDKMGPLYNGTTCGTIKEGQNCITHGRPDLGYLYWRW 136
             + +E  DH  DE  CDYT G WV D++GPLYNG+TCGTIK+GQNC  HGRPD GYLYW+W
Sbjct:    65 ESQESFDHIQDEPLCDYTQGNWVRDEIGPLYNGSTCGTIKDGQNCFRHGRPDSGYLYWKW 124

Query:   137 KPRLCKLPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNK 196
             KP  C +PRFD N FLD +R+KHLAF+GDSMARNQLESLLC+LSTVS P+LVYR+GEDNK
Sbjct:   125 KPNECDIPRFDSNRFLDLMRDKHLAFIGDSMARNQLESLLCLLSTVSSPDLVYRNGEDNK 184

Query:   197 FRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSV 256
             FRRW F++HNVTVSVYWSPFLV G+EKS    DHN L++D VDERW  DL++ D +V+SV
Sbjct:   185 FRRWRFESHNVTVSVYWSPFLVAGLEKSGN-LDHNVLHIDRVDERWGNDLERFDTVVVSV 243

Query:   257 GHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDV 316
             GHWFLHPAVY E  SVLGCH C   N TE+GFYDV RKA++TTL+ +      SG   +V
Sbjct:   244 GHWFLHPAVYYESGSVLGCHSCETSNCTEVGFYDVFRKAIRTTLRAVA----GSGR--EV 297

Query:   317 FLTTFSPSHFEGE-WDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFK 375
              LTTFSPSHFEG  WD  GAC  T PY EG K+LEG+D +MR IE+EE   A        
Sbjct:   298 ILTTFSPSHFEGRPWDSLGACNMTKPY-EG-KVLEGLDLDMRKIEIEEYTAAAAE----- 350

Query:   376 GLRLEALDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLE 435
              +RLE LDVT +S++RPDGHPGPYMY +PF NGV E + NDC+HWCLPGP+DTWN+I++E
Sbjct:   351 -VRLEVLDVTAMSVLRPDGHPGPYMYADPFKNGVPERIPNDCLHWCLPGPVDTWNEIMIE 409

Query:   436 VIRKWQ 441
             ++R+W+
Sbjct:   410 MLRRWK 415




GO:0005634 "nucleus" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0010411 "xyloglucan metabolic process" evidence=IMP
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2035342 TBL25 "AT1G01430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146062 TBL21 "AT5G15890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125048 TBL26 "AT4G01080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128489 TBL24 "AT4G23790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136113 TBL23 "AT4G11090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146077 TBL19 "AT5G15900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091388 TBL22 "AT3G28150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153077 YLS7 "AT5G51640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138043 TBL18 "AT4G25360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 8e-88
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 7e-43
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 2e-23
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  268 bits (687), Expect = 8e-88
 Identities = 117/296 (39%), Positives = 158/296 (53%), Gaps = 27/296 (9%)

Query: 143 LPRFDPNAFLDFLRNKHLAFVGDSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHF 202
           LPRFD   FL+ LR K + FVGDS++RNQ ESL+C+LS V  P     +  D +  R+ F
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLE-RDGRLFRFRF 59

Query: 203 DAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAADLDQIDMIVLSVGHWFLH 262
             +NVT+  YWSPFLV+     +       L +D +DE+W+      D++V + GHW+LH
Sbjct: 60  KDYNVTIEFYWSPFLVESDNAEEGK---RVLKLDSIDEKWSKLWPGADVLVFNSGHWWLH 116

Query: 263 PAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFS 322
             VY      +G  YC   N  E+GF D  RKAL+T  K +      S     VF  TFS
Sbjct: 117 RKVY------IGWDYCQKSNYKEMGFLDAYRKALETWAKWVDVNLPPSKTR--VFFRTFS 168

Query: 323 PSHFE-GEWDKAGACPKTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEA 381
           P HFE GEW+  G+C +T P    E   +G+  EM  I  E +       +      ++ 
Sbjct: 169 PVHFEGGEWNTGGSCYETEPLLGSEY--KGLTPEMIDIVNEVLS------RAAMKTPVKL 220

Query: 382 LDVTKLSLMRPDGHPGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVI 437
           LD+T LS  R DGHP  Y  P P         + DC+HWCLPG  DTWN++LL ++
Sbjct: 221 LDITLLSQYRKDGHPSVYRKPGPP------KKEQDCLHWCLPGVPDTWNELLLALL 270


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 448
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.95
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 97.71
cd01829200 SGNH_hydrolase_peri2 SGNH_peri2; putative periplas 88.81
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=9.6e-114  Score=878.92  Aligned_cols=329  Identities=32%  Similarity=0.596  Sum_probs=279.6

Q ss_pred             CCCCCCcCccCceeeCCCCCCcCCCCCC-CccCCcccccCCCCCCCCceeeecCCcCCCCCCChHHHHHHHcCCcEEEEe
Q 013153           86 DDETPCDYTIGKWVHDKMGPLYNGTTCG-TIKEGQNCITHGRPDLGYLYWRWKPRLCKLPRFDPNAFLDFLRNKHLAFVG  164 (448)
Q Consensus        86 ~~~~~CD~~~G~WV~D~~~PlY~~~~Cp-~i~~~~~C~~nGRpD~~Yl~WRWQP~gC~LPrFD~~~FLe~lRgKri~FVG  164 (448)
                      ...+.||||+|+||+|+++|+|++++|| ||+++|||++|||||++|++|||||++|+||||||.+||++||||||||||
T Consensus        48 ~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVG  127 (387)
T PLN02629         48 ANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVG  127 (387)
T ss_pred             CCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEec
Confidence            3467799999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHhhccccCCceeeecCCCCCeeEEEEeecCeEEEEEEccccccccccCCCCCCcceeeecccchHHhh
Q 013153          165 DSMARNQLESLLCMLSTVSVPNLVYRDGEDNKFRRWHFDAHNVTVSVYWSPFLVKGVEKSKTGPDHNKLYVDHVDERWAA  244 (448)
Q Consensus       165 DSl~RNq~eSLlCLL~~~~~~~~v~~~~~~~~~~~~~F~~~n~TV~~yWsPFLV~~~~~~~~~~~~~~l~LD~~~~~w~~  244 (448)
                      |||+|||||||+|||+++++........ ...+.+|+|++||+||+||||||||+.+..+    ....|+||++++ +++
T Consensus       128 DSL~RNQ~eSLvClL~~~~p~~~~~~~~-~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~----~~~~l~LD~id~-~a~  201 (387)
T PLN02629        128 DSLGRNQWESLICLISSSVPSTRTQMSR-GDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ----GKRVLKLEEISG-NAN  201 (387)
T ss_pred             cccchhHHHHHHHHhhccCCCCceeeec-CCceEEEEeccCCEEEEEEecceEEeeecCC----CceeEEecCcch-hhh
Confidence            9999999999999999988754322221 2357899999999999999999999986543    346899999885 589


Q ss_pred             ccCCCcEEEEeccccccccceeccCCeeeccccC--CCCccccccHHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEecC
Q 013153          245 DLDQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYC--PGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFS  322 (448)
Q Consensus       245 ~~~~~DvlV~ntGhWw~~~~~~~e~g~~~g~~~~--~~~n~~e~~~~~ayr~alrt~~~~i~~~~~~~~~~~~VffRt~S  322 (448)
                      .|.++|||||||||||.+++      .++||+++  .+.++++|++.+||++||+||++|| +.+ +++.+++|||||+|
T Consensus       202 ~w~~~DvlVfntghWw~~~~------~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv-~~~-~~~~kt~vffrT~S  273 (387)
T PLN02629        202 AWRDADVLIFNTGHWWSHQG------SLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWV-DTN-VDRSRTRVFFQSIS  273 (387)
T ss_pred             hhccCCEEEEeCccccCCCC------eeEEeeeeccCCccccCccHHHHHHHHHHHHHHHH-Hhc-CCCCCcEEEEEecC
Confidence            99999999999999999874      34566665  3467889999999999999999997 455 46789999999999


Q ss_pred             CCCCC-CCCCCCC-----CCC-CcccCCCCCccccCCcHHHHHHHHHHHHHHHHhhhhccCceeEEEeccccccCCCCCC
Q 013153          323 PSHFE-GEWDKAG-----ACP-KTTPYKEGEKLLEGMDAEMRHIEVEEVELAKENAKQFKGLRLEALDVTKLSLMRPDGH  395 (448)
Q Consensus       323 P~Hfe-G~W~~gg-----~C~-~t~P~~~~e~~~~~~~~~~~~i~~ee~~~a~~~~~~~~~~~v~lLDIT~ls~~R~DgH  395 (448)
                      |+||| |+||+||     +|. +|+|+. ++.+.++...+|+  ++|++.++       ++.+|++||||+||+||||||
T Consensus       274 P~Hfe~g~Wn~gg~~~~~~C~~et~P~~-~~~~~~~~~~~~~--~ve~v~~~-------~~~~v~lLDIT~ls~lR~DgH  343 (387)
T PLN02629        274 PTHYNPSEWSAGASTTTKNCYGETTPMS-GMTYPGAYPDQMR--VVDEVIRG-------MHNPAYLLDITLLSELRKDGH  343 (387)
T ss_pred             cccccCCCcCCCCCCCCCCCccCCccCc-CccccCcchHHHH--HHHHHHHh-------cCCceEEEechhhhhcCCCCC
Confidence            99999 6999875     575 789997 4444555556665  45666553       257999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCeecccCCCchhhHHHHHHHHHH
Q 013153          396 PGPYMYPNPFANGVQEHVQNDCVHWCLPGPIDTWNQILLEVIR  438 (448)
Q Consensus       396 ps~y~~~~~~~~g~~~~~~~DC~HWCLPG~~DtWNelL~~~L~  438 (448)
                      ||+|+...+.+++.....++||+||||||||||||||||++|+
T Consensus       344 Ps~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~  386 (387)
T PLN02629        344 PSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF  386 (387)
T ss_pred             cccccCCCchhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence            9999865443322222457899999999999999999999986



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 96.82
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=96.82  E-value=0.013  Score=52.52  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=35.3

Q ss_pred             CCCcEEEEeccccccccceeccCCeeeccccCCCCccccccHHHHHHHHHHHHHHHHHhhcCCCCCCceEEEEecCCCCC
Q 013153          247 DQIDMIVLSVGHWFLHPAVYLEGDSVLGCHYCPGLNQTEIGFYDVLRKALKTTLKTITERRGSSGDFIDVFLTTFSPSHF  326 (448)
Q Consensus       247 ~~~DvlV~ntGhWw~~~~~~~e~g~~~g~~~~~~~n~~e~~~~~ayr~alrt~~~~i~~~~~~~~~~~~VffRt~SP~Hf  326 (448)
                      ..+|+|||+.|..=..                    .    ..+.|++.|+..++.+.+.    ..+++++|.+..|...
T Consensus        73 ~~pd~Vvi~~G~ND~~--------------------~----~~~~~~~~l~~ii~~l~~~----~p~~~ii~~~~~P~~~  124 (200)
T 4h08_A           73 TKFDVIHFNNGLHGFD--------------------Y----TEEEYDKSFPKLIKIIRKY----APKAKLIWANTTPVRT  124 (200)
T ss_dssp             SCCSEEEECCCSSCTT--------------------S----CHHHHHHHHHHHHHHHHHH----CTTCEEEEECCCCCEE
T ss_pred             CCCCeEEEEeeeCCCC--------------------C----CHHHHHHHHHHHHHHHhhh----CCCccEEEeccCCCcc
Confidence            5689999998864110                    0    1356888888888776443    3457889998888653




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 96.08
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 81.72
d1pvva2163 Ornithine transcarbamoylase {Archaeon Pyrococcus f 81.62
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.08  E-value=0.017  Score=49.03  Aligned_cols=15  Identities=33%  Similarity=0.530  Sum_probs=12.7

Q ss_pred             HcCCcEEEEecchhH
Q 013153          155 LRNKHLAFVGDSMAR  169 (448)
Q Consensus       155 lRgKri~FVGDSl~R  169 (448)
                      +..|||+|+|||++-
T Consensus         2 ~~~kri~~iGDSit~   16 (207)
T d3dc7a1           2 VSFKRPAWLGDSITA   16 (207)
T ss_dssp             BCCSSEEEEESTTTS
T ss_pred             CCCCEEEEEehHhhc
Confidence            357999999999984



>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure