Citrus Sinensis ID: 013163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MVRSNGARLLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGASR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHcccHHccccccEEEccccccccccccccccEEEcccccccccccccEEEHHcccccccccEEEcccccccccccHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHcccEEEEEEccccccccccccccccccccccccccccccEEEEEEccEEEEEEccccccccEEEcccccccccccEEEEEEEEEEEcccccccccEEEEcccccccccccccccEEEEEEEEcccccEEEcccEEEEEEcHHHHHccccEEEEccccccEEEEEccccccccEEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHccHHHHccccHHcccccccccEcccccccccEEEEEcccccccccccEEEEcccccccccHHHHcccccHccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccEEEEEEEHHHHHcccEEEEEEccccEcccccccccccccccccccccccccEEEEEccEEEEEEcccccccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEcccccccccccccccEEEEEEEEccccEEEccccEEEEEEEEHHHHHccccEEEEccccEEEEEEccccccccEEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mvrsngarLLHSWTRNLNLLEDSRNSIIKTVIggcsksfstgpcnqfrvsgnfslknanNHRNWLLLRLLNSnlgglrsihgtasmsarDYYDVLGVNKNATASEIKKAYYGLAKklhpdtnkddpeAEKKFQEVSKAYEVlkddekrsvyDQVGHEAFVhqetnggpgheggfgnpfqdifnmenifNFRDIFrnrmsgqdVKVAVELSFMEAVQgctktvtfqtelpceacggegvppgvkpekcrrckgsgmesiHSGFMSINQTcrqcggtghiitnwcksckgarvvkgsksvkldimpgvdnnetlkvfrsggadpdgnqpgdlYVTIKvredpvfrreganihVDSVLSVTQAILGgtiqvptltgdvvlkvrpgtqpgqkvvlknkgiktrnsfsfgdqyvhfnvsiptnLTQRQRELIEEFAKEERGEYDKRAAAGASR
Flexible Loop (DISEMBL)
mvrsngarllhSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKlhpdtnkddpeaEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEacggegvppgvkpeKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKgsksvkldimpgvdNNETLKVFrsggadpdgnqpgdLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLkvrpgtqpgqkvvlknkgiktrnsFSFGDQYVHFNvsiptnltqRQRELIEEfakeergeydkraaagasr
Low Complexity Region (SEG)
MVRSNGARLLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANNHRNWlllrllnsnlgglrsIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETnggpgheggfgnpfQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACggegvppgvkpekCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGASR
Disordered region (IsUnstruct)
********LLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAK***********************************Y*QVGHEAFV***********GGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVP*********RC****MESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF*************DLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLT****************************
Disordered Region (DISOPRED)
**********HSWTRNLNLL*********TVIG*************F************NHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV**********EGGFGNPFQDIFN*********************VAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV*********GNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELI*********************
Disordered Region (DISEMBL)
********LLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE**************
Disordered Region (DISPRO)
*****GARLLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFR**FR**MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG****VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRSNGARLLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGASR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	448	2.2.26 [Sep-21-2011]
Q38813	408	Chaperone protein dnaJ 1,	no	no	0.770	0.845	0.412	3e-78
Q5P1H7	376	Chaperone protein DnaJ 2	yes	no	0.781	0.930	0.421	2e-74
Q99M87	480	DnaJ homolog subfamily A	yes	no	0.770	0.718	0.415	3e-72
Q96EY1	480	DnaJ homolog subfamily A	yes	no	0.761	0.710	0.4	3e-72
Q6F6R1	368	Chaperone protein DnaJ OS	yes	no	0.743	0.904	0.435	1e-71
A5WBF8	377	Chaperone protein DnaJ OS	yes	no	0.761	0.904	0.430	5e-71
A1K4C4	375	Chaperone protein DnaJ OS	yes	no	0.781	0.933	0.414	4e-70
A1U613	374	Chaperone protein DnaJ OS	yes	no	0.767	0.919	0.414	4e-70
Q7NXI1	375	Chaperone protein DnaJ OS	yes	no	0.781	0.933	0.403	7e-69
Q8K9Y9	378	Chaperone protein DnaJ OS	yes	no	0.754	0.894	0.4	7e-69

>sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1 PE=2 SV=2

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 151/366 (41%), Positives = 225/366 (61%), Gaps = 21/366 (5%)

Query: 78  RSIHGTA--SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEV 135
           R IH T   + SAR+YYDVLGV+  AT  EIKK+++ LAKK HPDTN+++P A++KFQE+
Sbjct: 34  RYIHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKFQEI 93

Query: 136 SKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGP------GHEGGFGNPFQDIFNMENIFN 189
            +AYE L + E+R  YD++ +    +   +GG        ++  F + F  IF+      
Sbjct: 94  REAYETLGNSERREEYDKLQYRNSDYVNNDGGDSERFRRAYQSNFSDTFHKIFS------ 147

Query: 190 FRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRR 249
             +IF N     D++V + LS  EA +GCTK ++F   + C++C G G P       C  
Sbjct: 148 --EIFENNQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAAMSICPT 205

Query: 250 CKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNN 309
           C+G G  +I         +C+ C GTGHII  +C SC+G+ +V+G+K+ +L I  GV++ 
Sbjct: 206 CRGVGRVTIPP----FTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVESE 261

Query: 310 ETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVP 369
            T+ +  +G      +QPG+LY+ +KV  D  F R+G++I+VD+ +S TQAILGG + VP
Sbjct: 262 ATITIVGAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVVVP 321

Query: 370 TLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSF-SFGDQYVHFNVSIPTNLTQRQRELIE 428
           TL+G + L +  GTQP Q +VL+ KG+  +  F   GDQYV F V+ PT + +RQR ++E
Sbjct: 322 TLSGKIQLDIPKGTQPDQLLVLRGKGLPKQGFFVDHGDQYVRFRVNFPTEVNERQRAILE 381

Query: 429 EFAKEE 434
           EFAKEE
Sbjct: 382 EFAKEE 387

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5P1H7|DNAJ2_AROAE Chaperone protein DnaJ 2 OS=Aromatoleum aromaticum (strain EbN1) GN=dnaJ2 PE=3 SV=1

 Score =  280 bits (716), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/363 (42%), Positives = 214/363 (58%), Gaps = 13/363 (3%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+ RDYY+VLGVN++A+ +EIKKAY  LA K HPD N D+ ++E  F+E   AYE+L D 
Sbjct: 1   MAKRDYYEVLGVNRDASDNEIKKAYRKLAMKHHPDRNPDNKDSEDHFKEAKNAYEILSDA 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEG--GFGNPFQDIFNMENIFNFRDIFR----NRMS 199
           +KR+ YD+ GH A V      GPG +G  GF + F DIF   +IF           N   
Sbjct: 61  QKRAAYDRYGH-AGVDPSAGAGPGGQGFDGFADAFSDIFG--DIFGGAGGAGRGRSNVYR 117

Query: 200 GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIH 259
           G D++  +E+S  EA +G  KT+   T   CE C G G  PG +P+ C  C G+G   I 
Sbjct: 118 GADLRYNLEISLEEAARGADKTIRIPTVEECETCHGSGAKPGTQPKPCPTCGGAGQVRIQ 177

Query: 260 SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGG 319
            GF SI QTC +C GTG II + C+ C GA  VK  K++++ I  G+D  E +++  +G 
Sbjct: 178 QGFFSIQQTCPKCHGTGRIIPDPCRDCGGAGRVKRQKTLEVKIPAGID--EGMRLRHAGH 235

Query: 320 ADP--DGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVL 377
            +P  +G  PGDLYV I +R  PVF+R+  ++H +  +S+T A LGG I++PTL G   L
Sbjct: 236 GEPGVNGGPPGDLYVEIHIRAHPVFQRDHDDLHCEMPISITTAALGGEIEIPTLEGMARL 295

Query: 378 KVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGE 437
           K+   TQ G+   L+ KGI+   S + GD   H  V  P NLT+RQ+EL+ EF +    +
Sbjct: 296 KIPAETQSGKVFRLRGKGIRNVRSQAHGDLMCHVVVETPVNLTERQKELLREFEEVSSSD 355

Query: 438 YDK 440
            D+
Sbjct: 356 ADR 358

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Aromatoleum aromaticum (strain EbN1) (taxid: 76114)

>sp|Q99M87|DNJA3_MOUSE DnaJ homolog subfamily A member 3, mitochondrial OS=Mus musculus GN=Dnaja3 PE=1 SV=1

 Score =  273 bits (697), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 150/361 (41%), Positives = 219/361 (60%), Gaps = 16/361 (4%)

Query: 79  SIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKA 138
           S H +AS++  DYY +LGV +NA+  +IKKAYY LAKK HPDTNKDDP+A++KF ++++A
Sbjct: 82  SFHTSASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEA 141

Query: 139 YEVLKDDEKRSVYDQVGHEAFVHQETNGGPGH-EGGFG-NP---FQDIFNMENIFNFRDI 193
           YEVL D+ KR  YD  G   F    ++ G G+  GG   +P   F+ IF   +   F D 
Sbjct: 142 YEVLSDEVKRKQYDAYGSAGFDPGTSSSGQGYWRGGPSVDPEELFRKIFGEFSSSPFGD- 200

Query: 194 FRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGS 253
           F+N    Q  +  +EL+F +A +G  K  T      CE C G+G  PG K + C  C GS
Sbjct: 201 FQNVFD-QPQEYIMELTFNQAAKGVNKEFTVNIMDTCERCDGKGNEPGTKVQHCHYCGGS 259

Query: 254 GMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK 313
           GME+I++G   +  TCR+CGG G IITN C  C+GA   K  K V + +  GV++ +T++
Sbjct: 260 GMETINTGPFVMRSTCRRCGGRGSIITNPCVVCRGAGQAKQKKRVTIPVPAGVEDGQTVR 319

Query: 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG 373
           +       P G +  +++VT +V++ PVFRR+GA+IH D  +S+ QAILGGT +   L  
Sbjct: 320 M-------PVGKR--EIFVTFRVQKSPVFRRDGADIHSDLFISIAQAILGGTAKAQGLYE 370

Query: 374 DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433
            + + +  G Q  QK+ L  KGI   NS+ +GD Y+H  + +P  L+ RQ+ LI  +A++
Sbjct: 371 TINVTIPAGIQTDQKIRLTGKGIPRINSYGYGDHYIHIKIRVPKRLSSRQQNLILSYAED 430

Query: 434 E 434
           E
Sbjct: 431 E 431

Modulates apoptotic signal transduction or effector structures within the mitochondrial matrix. Affect cytochrome C release from the mitochondria and caspase 3 activation, but not caspase 8 activation. Isoform 1 increases apoptosis triggered by both TNF and the DNA-damaging agent mytomycin C; in sharp contrast, isoform 2 suppresses apoptosis. Can modulate IFN-gamma-mediated transcriptional activity (By similarity). Isoform 2 may play a role in neuromuscular junction development as an effector of the MUSK signaling pathway.

Mus musculus (taxid: 10090)

>sp|Q96EY1|DNJA3_HUMAN DnaJ homolog subfamily A member 3, mitochondrial OS=Homo sapiens GN=DNAJA3 PE=1 SV=2

 Score =  272 bits (696), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 146/365 (40%), Positives = 216/365 (59%), Gaps = 24/365 (6%)

Query: 79  SIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKA 138
           S H +A ++  DYY +LGV +NA+  EIKKAYY LAKK HPDTNKDDP+A++KF ++++A
Sbjct: 82  SFHTSAPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEA 141

Query: 139 YEVLKDDEKRSVYDQVGHEAF-------VHQETNGGP--GHEGGFGNPFQDIFNMENIFN 189
           YEVL D+ KR  YD  G   F        H    GGP    E  F   F + F+  +  +
Sbjct: 142 YEVLSDEVKRKQYDAYGSAGFDPGASGSQHSYWKGGPTVDPEELFRKIFGE-FSSSSFGD 200

Query: 190 FRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRR 249
           F+ +F      Q  +  +EL+F +A +G  K  T      CE C G+G  PG K + C  
Sbjct: 201 FQTVF-----DQPQEYFMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHY 255

Query: 250 CKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNN 309
           C GSGME+I++G   +  TCR+CGG G II + C  C+GA   K  K V + +  GV++ 
Sbjct: 256 CGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRVMIPVPAGVEDG 315

Query: 310 ETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVP 369
           +T+++       P G +  ++++T +V++ PVFRR+GA+IH D  +S+ QA+LGGT +  
Sbjct: 316 QTVRM-------PVGKR--EIFITFRVQKSPVFRRDGADIHSDLFISIAQALLGGTARAQ 366

Query: 370 TLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEE 429
            L   + + + PGTQ  QK+ +  KGI   NS+ +GD Y+H  + +P  LT RQ+ LI  
Sbjct: 367 GLYETINVTIPPGTQTDQKIRMGGKGIPRINSYGYGDHYIHIKIRVPKRLTSRQQSLILS 426

Query: 430 FAKEE 434
           +A++E
Sbjct: 427 YAEDE 431

Modulates apoptotic signal transduction or effector structures within the mitochondrial matrix. Affect cytochrome C release from the mitochondria and caspase 3 activation, but not caspase 8 activation. Isoform 1 increases apoptosis triggered by both TNF and the DNA-damaging agent mytomycin C; in sharp contrast, isoform 2 suppresses apoptosis. Can modulate IFN-gamma-mediated transcriptional activity. Isoform 2 may play a role in neuromuscular junction development as an effector of the MUSK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q6F6R1|DNAJ_ACIAD Chaperone protein DnaJ OS=Acinetobacter sp. (strain ADP1) GN=dnaJ PE=3 SV=1

 Score =  271 bits (692), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 155/356 (43%), Positives = 207/356 (58%), Gaps = 23/356 (6%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+ RDYY+VLGV+K A+  EIKKAY  LA K HPD N D+ EAE KF+E S+AYEVL D 
Sbjct: 1   MAKRDYYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEDKFKEASEAYEVLSDS 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIF----------- 194
           EKRS+YD++GH AF      G  G         +DIF+      F DIF           
Sbjct: 61  EKRSMYDRMGHNAFEGGGGGGFGGFSA------EDIFS-----QFGDIFGGAFGGGGRQQ 109

Query: 195 RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSG 254
           + +  G D++  +ELS  EAV+G  KT+TF    PCE C G+G       E CR C G+G
Sbjct: 110 QRQRRGSDLRYVMELSLEEAVRGVKKTITFTAPAPCEVCDGKGSKNPNDVETCRTCHGTG 169

Query: 255 MESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV 314
              +  GF S+ QTC  C G G II N C+SC G+ V    +++++ I  GVDN + +++
Sbjct: 170 QVRMQQGFFSVQQTCGTCRGQGKIIKNPCQSCHGSGVADRQQTLEVTIPAGVDNGDRVRL 229

Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD 374
              G A  DG Q GDLYV + VRE  +F+R+GA++++D  +S+  A LG  I++PTL G 
Sbjct: 230 SGKGEAVRDG-QAGDLYVEVVVREHEIFQRDGADLYMDVPVSIADAALGKEIEIPTLEGR 288

Query: 375 VVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEF 430
           V LK+  GTQ G+   L+ KG++   S   GD      V  P NLT RQREL +E 
Sbjct: 289 VSLKIPEGTQTGKLFRLRGKGVRPVRSSMVGDLLCRVVVETPVNLTSRQRELFKEL 344

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acinetobacter sp. (strain ADP1) (taxid: 62977)

>sp|A5WBF8|DNAJ_PSYWF Chaperone protein DnaJ OS=Psychrobacter sp. (strain PRwf-1) GN=dnaJ PE=3 SV=1

 Score =  268 bits (686), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 152/353 (43%), Positives = 212/353 (60%), Gaps = 12/353 (3%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           MS RD+Y+VLGV+++A   EIKKAY  LA K HPD N DDP+AE+KF+E S AYEVL D 
Sbjct: 1   MSKRDFYEVLGVDRSADEREIKKAYRKLAMKYHPDRNSDDPDAEEKFKEASMAYEVLSDK 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIF-NFRDIFRNRMSGQ--- 201
           EKRS YD++GH AF  +   GG G  G     FQDIF   +IF NF DIF     G    
Sbjct: 61  EKRSAYDRMGHAAF--ENGMGGGGFGGAGAGNFQDIFG--DIFGNFGDIFGQSRGGGGRQ 116

Query: 202 ----DVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMES 257
               D++  +ELS  EAV+GC K ++F    PCE C G+G       + C  C G G   
Sbjct: 117 RRGSDLRYVIELSLEEAVRGCKKEISFTAPAPCETCDGKGAKNASDIQTCSTCGGHGQVR 176

Query: 258 IHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS 317
           +  GF ++ QTC  CGG+G  I N C  C G  V   S+++++ I  GVD+ + +++   
Sbjct: 177 MQQGFFAVQQTCPNCGGSGQEIKNPCNDCHGTGVKDKSRTLEVSIPAGVDDGDRVRLAGE 236

Query: 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVL 377
           G A   G Q GDLYV ++V+E PVF+R+GA++++D  +S+T A LG  +++PTL G V +
Sbjct: 237 GEAGGAGVQNGDLYVEVRVKEHPVFKRQGADLYMDVPVSITDAALGKEVEIPTLDGKVKI 296

Query: 378 KVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEF 430
           KV  GTQ G+ + ++ KG+    +   GD      V  P NLT+ Q++L+ +F
Sbjct: 297 KVAEGTQSGKLLRVRGKGVTPVRTTMKGDLICRIMVETPVNLTREQKDLLRQF 349

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Psychrobacter sp. (strain PRwf-1) (taxid: 349106)

>sp|A1K4C4|DNAJ_AZOSB Chaperone protein DnaJ OS=Azoarcus sp. (strain BH72) GN=dnaJ PE=3 SV=1

 Score =  265 bits (678), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/362 (41%), Positives = 204/362 (56%), Gaps = 12/362 (3%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           MS RDYY+VLGVN++A   EIKKAY  LA K HPD N D  EAE+KF+E  +AYEVL D 
Sbjct: 1   MSKRDYYEVLGVNRDAGDDEIKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLSDA 60

Query: 146 EKRSVYDQVGHEAF-----VHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSG 200
           +K+  YD+ GH              G  G    FG+ F D+F        R    N   G
Sbjct: 61  QKKGAYDRYGHAGVDPSMGGGGGGQGFEGFADAFGDIFGDLFGGRGGGGGRS---NVYRG 117

Query: 201 QDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHS 260
            D++  +E+S  EA +G  KT+   T   C  C G G  PG +P+ C  C G+G   I  
Sbjct: 118 ADLRYNLEISLEEAARGAEKTIRIPTVEECGTCHGSGAKPGTQPKTCPTCGGAGQVRIQQ 177

Query: 261 GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGA 320
           GF SI QTC +C GTG II + C  C GA  VK  K++++ I  G+D  E +++  SG  
Sbjct: 178 GFFSIQQTCPKCHGTGRIIPDPCGDCGGAGRVKKQKTLEVKIPAGID--EGMRLRHSGHG 235

Query: 321 DP--DGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLK 378
           +P  +G  PGDLYV I +R+ PVF R+  ++H +  +S   A LGG I++PTL G   +K
Sbjct: 236 EPGVNGGPPGDLYVEIHIRQHPVFERDHDDLHCEMPISFATAALGGEIEIPTLEGMARIK 295

Query: 379 VRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEY 438
           +   TQ G+   L+ KGIK   S + GD   H  V  P NLT+RQ+EL+ EF +  +G+ 
Sbjct: 296 IPAETQSGKVFRLRGKGIKNVRSHTHGDLMCHVVVETPVNLTERQKELLREFEEVSKGDA 355

Query: 439 DK 440
           ++
Sbjct: 356 ER 357

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Azoarcus sp. (strain BH72) (taxid: 62928)

>sp|A1U613|DNAJ_MARAV Chaperone protein DnaJ OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=dnaJ PE=3 SV=1

 Score =  265 bits (678), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 144/347 (41%), Positives = 197/347 (56%), Gaps = 3/347 (0%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+ RDYY+VLG++++A   EIK+AY  LA K HPD N DD +AE KF+E S+AYE+L D 
Sbjct: 1   MAKRDYYEVLGISRDADEKEIKRAYRKLAMKYHPDRNPDDKDAETKFKEASEAYEILADS 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKV 205
            KR+ YDQ GH     Q   G  G    F + F D+F   +IF      R      D++ 
Sbjct: 61  SKRAAYDQFGHAGVDGQAGGGFGGGGASFSDIFGDVFG--DIFGGGGRGRTTRGA-DLRY 117

Query: 206 AVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSI 265
            +EL   EAV+G T  +       CEAC G G   G +PE C  C+G G   +  GF ++
Sbjct: 118 TLELDLEEAVKGKTVKINIPGHKECEACDGSGAEKGSRPETCGTCQGMGQVRMQQGFFTV 177

Query: 266 NQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGN 325
            Q C  C G+G II N CKSC G   V+  K++ + + PGVD  + +++   G    DG 
Sbjct: 178 QQACPTCRGSGQIIKNPCKSCHGQGRVRQEKTLSVKVPPGVDTGDRIRLSGEGEMGVDGG 237

Query: 326 QPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQP 385
            PGDLYV + VRE  +F R+G N++ +  +S+  A LGG ++VPTL G V LK+ P TQ 
Sbjct: 238 PPGDLYVQVAVREHSIFTRDGRNLYCEVPISIVDATLGGELEVPTLDGRVKLKIPPETQT 297

Query: 386 GQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAK 432
           G+   L+NKG+        GD      V  P NLT+RQ+EL+EEF +
Sbjct: 298 GKLFRLRNKGVSPVRGGPAGDLLCRVIVETPVNLTKRQKELLEEFQQ 344

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348)

>sp|Q7NXI1|DNAJ_CHRVO Chaperone protein DnaJ OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=dnaJ PE=3 SV=1

 Score =  261 bits (667), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 144/357 (40%), Positives = 200/357 (56%), Gaps = 7/357 (1%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           MS RDYYDVLGVN++A+  +IKKAY  LA K HPD N D  EAE KF+EV +AYE+L D 
Sbjct: 1   MSKRDYYDVLGVNRDASDDDIKKAYRKLAMKYHPDRNPDSKEAEDKFKEVKEAYEILSDS 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFR-----NRMSG 200
           +KR  YDQ GH     Q   GG G   G    F DIF+  +IF            N   G
Sbjct: 61  QKRGAYDQFGHAGVDPQAGMGGGGQGFGGFGDFADIFS--DIFGGGRGGSGGGRSNVYRG 118

Query: 201 QDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHS 260
            D++  +E++  EA +GC K +   +   C  C G G  PG +P+ C  C G G   +  
Sbjct: 119 ADLRYNMEITLEEAARGCEKQIRIPSHESCSTCNGTGAKPGTQPKTCATCGGHGQVRMSQ 178

Query: 261 GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGA 320
           GF SI QTC  C GTG  IT+ C SC GA   K +K++ + I  GVD  + +++   G  
Sbjct: 179 GFFSIQQTCPTCHGTGKQITDPCGSCHGAGQKKTTKTLNVKIPAGVDEGDRIRLGGEGEP 238

Query: 321 DPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVR 380
             +G   GDLYV   +++  VF+R+G ++H +  +S + A LGG +++PTL G   +K+ 
Sbjct: 239 GQNGGPAGDLYVVTHIKQHAVFQRDGMDLHCEMPISFSTAALGGEVEIPTLDGMAKVKIS 298

Query: 381 PGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGE 437
           P TQ G+   L+ KG+K      +GD + H  V  P  LT+RQ+EL+ EF    +G+
Sbjct: 299 PETQSGRVYRLRGKGVKAVRGAEYGDLHCHVVVETPVKLTERQKELLREFEAISQGD 355

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

>sp|Q8K9Y9|DNAJ_BUCAP Chaperone protein DnaJ OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=dnaJ PE=3 SV=1

 Score =  261 bits (667), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 142/355 (40%), Positives = 201/355 (56%), Gaps = 17/355 (4%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+ +DYY +LG+ K+A   EIKKAY  LA K HPD N+ D  AE KF+E+ +AYE+L ++
Sbjct: 1   MAKKDYYQILGIPKSAEEREIKKAYKRLAMKYHPDRNQGDKNAENKFKEIKEAYEILINE 60

Query: 146 EKRSVYDQVGHEAFV----HQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIF---RNRM 198
           EKR+ YDQ GH AF        T         FG+ F D+F         DIF   RN+ 
Sbjct: 61  EKRTAYDQYGHAAFENGYNQNNTYSTFTSSTDFGDIFGDVFG--------DIFGGSRNQR 112

Query: 199 --SGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGME 256
              G D+   +E+S  EAV+G TK +   T   C+ C G G   G KP  C  C G G  
Sbjct: 113 VKKGADLCYNMEISLEEAVKGTTKEIRIPTFQKCKTCYGMGTSTGTKPNGCSTCHGKGQI 172

Query: 257 SIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFR 316
            I  GF ++ Q+C  C G G +I N C+ C+G   +K +K++ + I PG+D N+ +++ +
Sbjct: 173 HIRKGFFTVQQSCPTCNGIGTVIKNPCRMCRGQGRIKTNKTLSVKIPPGIDTNDKIRLSK 232

Query: 317 SGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVV 376
            G A  +G QPGDLYV +KV + P+F RE  N++ +  ++ T A LGG I+VPTL G V 
Sbjct: 233 EGEAGTNGAQPGDLYVQMKVNKHPIFEREENNLYCEVPINFTMAALGGEIEVPTLDGRVN 292

Query: 377 LKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFA 431
           LK+   TQ G+   ++ KG+K+  S S GD      V  P NL ++Q+ L+ E  
Sbjct: 293 LKIPSETQSGKLFRIRGKGVKSVQSRSRGDLLCRVVVETPVNLNEKQKYLLSELG 347

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
359487428	451	PREDICTED: chaperone protein dnaJ 1, mit	0.991	0.984	0.704	0.0
224059668	445	predicted protein [Populus trichocarpa]	0.975	0.982	0.687	1e-175
449436261	447	PREDICTED: dnaJ homolog 1, mitochondrial	0.988	0.991	0.664	1e-170
255544256	441	chaperone protein DNAj, putative [Ricinu	0.982	0.997	0.675	1e-169
356557132	444	PREDICTED: chaperone protein dnaJ 1, mit	0.984	0.993	0.652	1e-169
356528564	444	PREDICTED: chaperone protein dnaJ 1, mit	0.984	0.993	0.652	1e-168
224104011	430	predicted protein [Populus trichocarpa]	0.941	0.981	0.667	1e-167
239582692	442	DnaJ-like protein [Nicotiana tabacum]	0.968	0.981	0.653	1e-161
297795411	455	hypothetical protein ARALYDRAFT_494855 [	0.988	0.973	0.630	1e-160
21553367	456	DnaJ protein-like [Arabidopsis thaliana]	0.988	0.971	0.624	1e-159

>gi|359487428|ref|XP_002263448.2| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Vitis vinifera] gi|297736212|emb|CBI24850.3| unnamed protein product [Vitis vinifera]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/453 (70%), Positives = 367/453 (81%), Gaps = 9/453 (1%)

Query: 1   MVRSNGARLLHSWTR---NLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKN 57
           MVR+NGA+L     R     +LLE S  SI ++++ G  + F +G CN            
Sbjct: 1   MVRTNGAKLFRCLARKSLQSSLLEASPTSINESLLRGHYRCFGSGICNNSSRVIGIPNST 60

Query: 58  ANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKL 117
           + NHRN LL  +LN+N G  R IHGTA M+A DYYD LGV+KNA+ASEIKKAYYGLAKK 
Sbjct: 61  SVNHRNRLLFGVLNANWGAARWIHGTAYMAANDYYDTLGVSKNASASEIKKAYYGLAKKF 120

Query: 118 HPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPG---HEGGF 174
           HPDTNK+DP+AEKKFQEV KAYEVLKD+EKRS+YDQVGH+AF    T GG G   H GGF
Sbjct: 121 HPDTNKEDPDAEKKFQEVQKAYEVLKDEEKRSLYDQVGHDAFEQANTEGGAGNPFHGGGF 180

Query: 175 GNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACG 234
           GNPF+DIF  +N F F+ IF+  + GQDVKV++ELSFMEAVQGCTKTVTFQT LPCEACG
Sbjct: 181 GNPFEDIF--QNDF-FKTIFKQNIGGQDVKVSIELSFMEAVQGCTKTVTFQTALPCEACG 237

Query: 235 GEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKG 294
           G GVPPG KPE C+RC+GSGM  + +G   +  TC  CGGTG  ++ +CKSCKG RVV+G
Sbjct: 238 GSGVPPGTKPETCKRCRGSGMMFMQNGPFRLQSTCTHCGGTGKTVSTFCKSCKGDRVVRG 297

Query: 295 SKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSV 354
           SKSVKLDIMPGVD+NETLKV+RSGGADP+GNQPGDLYVTI+VR+DPVFRREG +IHVD+V
Sbjct: 298 SKSVKLDIMPGVDDNETLKVYRSGGADPEGNQPGDLYVTIRVRQDPVFRREGPDIHVDAV 357

Query: 355 LSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVS 414
           LS+TQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLK KG+K RNS SFGDQYVHFNVS
Sbjct: 358 LSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKRKGVKGRNSLSFGDQYVHFNVS 417

Query: 415 IPTNLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
           IP+NLTQRQR+LIEEFAKEE+GEYDK AAAGAS
Sbjct: 418 IPSNLTQRQRQLIEEFAKEEQGEYDKGAAAGAS 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059668|ref|XP_002299961.1| predicted protein [Populus trichocarpa] gi|222847219|gb|EEE84766.1| predicted protein [Populus trichocarpa]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 312/454 (68%), Positives = 367/454 (80%), Gaps = 17/454 (3%)

Query: 1   MVRSNGARLLHSWTR---NLNLLEDSRNSIIKTVIGGCSKSFST--GPCNQFRVSGNFSL 55
           MVRS+ ARL+    R   +LNLL++S NS+ K+V+ G  +  ST  G CN  R  GN+S 
Sbjct: 1   MVRSHSARLVGWLARPSLSLNLLQESANSVHKSVLNGSYRRLSTTTGVCNPVRFIGNYSP 60

Query: 56  KNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAK 115
           KN N   NWL L  LN+  G  RSIHG+  MS R+YYDVLGV KNA+AS+IKKAYYGLAK
Sbjct: 61  KNVN-QTNWLQLGALNAKFGATRSIHGSVHMS-REYYDVLGVGKNASASDIKKAYYGLAK 118

Query: 116 KLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN--GGPGHEGG 173
           KLHPDTNKDDPEAEKKFQEVSKAYEVLKDD+KR  YDQ+GH+AF +Q+    GGPG E  
Sbjct: 119 KLHPDTNKDDPEAEKKFQEVSKAYEVLKDDQKREQYDQLGHDAFENQDNYQPGGPGFESP 178

Query: 174 FGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEAC 233
           FG+     F ME+IF+  ++FR  ++GQDVKV+VELSFMEAVQGCTKT+TFQT++PCE C
Sbjct: 179 FGD-----FRMEDIFS--NVFRQNVAGQDVKVSVELSFMEAVQGCTKTITFQTDVPCETC 231

Query: 234 GGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVK 293
           GGEGVPPGVKP+ C+RCKG GM S+  GF S  QTC QCGGTG   +++C+SC G  VV+
Sbjct: 232 GGEGVPPGVKPQMCKRCKGRGMISMQKGFFSFQQTCDQCGGTGQTFSSFCRSCHGHTVVR 291

Query: 294 GSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDS 353
           GSK++ L+I  GVD+NET+K+ +SGGADP+ NQPGDLYVTIKVREDPVFRREG+NIHVD+
Sbjct: 292 GSKTISLNIPTGVDDNETMKIHKSGGADPEKNQPGDLYVTIKVREDPVFRREGSNIHVDA 351

Query: 354 VLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNV 413
           VL +TQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIK R S+SFGD++VHFNV
Sbjct: 352 VLGITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKGRGSYSFGDEFVHFNV 411

Query: 414 SIPTNLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
           SIP+NLT RQRELIEEFAKEE GEY+KR   GAS
Sbjct: 412 SIPSNLTPRQRELIEEFAKEEHGEYEKR-VVGAS 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436261|ref|XP_004135911.1| PREDICTED: dnaJ homolog 1, mitochondrial-like [Cucumis sativus]

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 299/450 (66%), Positives = 355/450 (78%), Gaps = 7/450 (1%)

Query: 1   MVRSNGARLLHSWTR---NLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKN 57
           MVRS+G +L+    R     +L  +S  S+   V  G  + F +G CN+F   GN + KN
Sbjct: 1   MVRSDGLKLIRLLARRSFTPHLPRESSTSVTDAVFRGSCRQFHSGVCNKFACFGNCASKN 60

Query: 58  ANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKL 117
            N  +NW  L +L +N G  + IHGTA MSA +YYD LGVNKNATASEIKKAYYGLAKKL
Sbjct: 61  VNK-KNWFRLGVLGANYGEAKFIHGTAHMSANNYYDTLGVNKNATASEIKKAYYGLAKKL 119

Query: 118 HPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNP 177
           HPDTNKDDP+AEKKFQEVSKAYEVLKD++KR  YD+VGHEAF  Q+ +GG    GG  +P
Sbjct: 120 HPDTNKDDPDAEKKFQEVSKAYEVLKDEDKRRQYDEVGHEAFTQQDHHGGFPGGGGGFDP 179

Query: 178 FQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG 237
           F  IF     F+F +IFR    G+D+KV +E+SFMEAVQGC+KTV+F   + C+ CGG G
Sbjct: 180 FSGIFRE---FDFSNIFRQNFGGEDIKVVLEISFMEAVQGCSKTVSFNAAVACDTCGGSG 236

Query: 238 VPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKS 297
           VPPG +PE CRRCKGSGM  + +G   +  TC QCGG+G I++N+CKSC G RVV+  KS
Sbjct: 237 VPPGTRPETCRRCKGSGMTYMQTGPFRMQTTCTQCGGSGKIVSNFCKSCNGERVVRKMKS 296

Query: 298 VKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSV 357
           VKLDI+PG+D+NET+KVFRSGGADP+GNQPGDLYVT+KVREDPVF+REG++IHVD+VLS+
Sbjct: 297 VKLDIIPGIDDNETMKVFRSGGADPEGNQPGDLYVTVKVREDPVFKREGSDIHVDTVLSI 356

Query: 358 TQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPT 417
           TQAILGGT+QVPTLTGDVVLKVRPGTQPGQKVVLK KGIKTRNS+SFGDQYVHFNVSIPT
Sbjct: 357 TQAILGGTVQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTRNSYSFGDQYVHFNVSIPT 416

Query: 418 NLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
            LT RQRELIEEF+KEE+GE DK  AAGAS
Sbjct: 417 TLTPRQRELIEEFSKEEQGEDDKSRAAGAS 446

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544256|ref|XP_002513190.1| chaperone protein DNAj, putative [Ricinus communis] gi|223547688|gb|EEF49181.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 302/447 (67%), Positives = 358/447 (80%), Gaps = 7/447 (1%)

Query: 1   MVRSNGARLLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANN 60
           MVRS+G +L+ +W    +    S NS+ K  + G  +S STG      +  N+S KN + 
Sbjct: 1   MVRSHGVKLV-AWLARRSPSSISTNSVFKDPLNGNCRSLSTGFSKPVGIMRNYSPKNVS- 58

Query: 61  HRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPD 120
            +NWLLL  L++N G  RSIHG+A+MS RDYYD+LGV+KNA++SEIKKAYYGLAKKLHPD
Sbjct: 59  QKNWLLLGSLSANFGVARSIHGSAAMS-RDYYDILGVSKNASSSEIKKAYYGLAKKLHPD 117

Query: 121 TNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQD 180
           TNKDDPEAEKKFQEVSKAYEVLKD+EKR+ YD+VGH+AF  +    G  H G   + F  
Sbjct: 118 TNKDDPEAEKKFQEVSKAYEVLKDEEKRAQYDEVGHDAF--ERNLNGDFHPGAGFDDFDS 175

Query: 181 IFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPP 240
            F M     F +IF+ +  GQDVKV +ELSFMEAVQGCTKTV+FQT++PCEAC GEGVPP
Sbjct: 176 FFRMGGDI-FGNIFKQKFGGQDVKVHIELSFMEAVQGCTKTVSFQTDVPCEACRGEGVPP 234

Query: 241 GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKL 300
           GVKPE C+RCKG+GM     GF+S+   C QCGGTG  ++++C+SC G +VV+GSKS+KL
Sbjct: 235 GVKPELCKRCKGTGMVFTQKGFISLQHPCNQCGGTGQTVSSFCRSCNGRKVVRGSKSIKL 294

Query: 301 DIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQA 360
           DI+PGVD+NET++V RSGGADPD NQPGDL+VTI+VREDPVFRREG+NIHVD+VLSVTQA
Sbjct: 295 DIVPGVDDNETIRVPRSGGADPDRNQPGDLFVTIRVREDPVFRREGSNIHVDAVLSVTQA 354

Query: 361 ILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLT 420
           ILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLK KGIKTR S+S GDQ+VHF VSIP NLT
Sbjct: 355 ILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTRGSYSLGDQFVHFTVSIPANLT 414

Query: 421 QRQRELIEEFAKEERGEYDKRAAAGAS 447
            RQRELIEEFAKEE+GEY KR AAGAS
Sbjct: 415 PRQRELIEEFAKEEQGEYSKR-AAGAS 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557132|ref|XP_003546872.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max]

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 293/449 (65%), Positives = 354/449 (78%), Gaps = 8/449 (1%)

Query: 1   MVRSNGARLLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFS--LKNA 58
           M+RSNG RLL S    L  L  +   I + +     ++ S+G CN  RV GN S  + N 
Sbjct: 1   MIRSNGVRLLRSLPEKL--LRHANERIYEGMCQWGYRTLSSGLCNPSRVIGNLSPNVGNG 58

Query: 59  NNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLH 118
            N +N+LL    N+  G  RSIHG+AS+ ARDYY+VLGV+KNA++SEIKKAYYGLAKKLH
Sbjct: 59  GNLKNYLLFGAANTYWGTSRSIHGSASL-ARDYYEVLGVSKNASSSEIKKAYYGLAKKLH 117

Query: 119 PDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPF 178
           PDTNKDDPEAEKKFQEVS AYEVLKD+EKR  YDQVGH+A+V+QE+  G G   GF NPF
Sbjct: 118 PDTNKDDPEAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDAYVNQESTNGFGGNSGF-NPF 176

Query: 179 QDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV 238
           + +F   +    +  F   + G+DVK  +ELSFMEAV+GC KT+TFQTE+ C  CGG GV
Sbjct: 177 EQMFRDHDFV--KSFFHQNIGGEDVKTFIELSFMEAVRGCNKTITFQTEVLCNTCGGSGV 234

Query: 239 PPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSV 298
           PPG +PE C+RCKGSG+  + +G   +  TC  C GTG I++N+CKSCKG +V KG+KSV
Sbjct: 235 PPGTRPETCKRCKGSGVTYVQTGIFRMESTCGTCKGTGKIVSNFCKSCKGTKVTKGTKSV 294

Query: 299 KLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVT 358
           KLDIM G+DNNET+KV+RSGGADPDG+ PGDLYVTIKVR+DPVFRREG+NIHVD++LS+T
Sbjct: 295 KLDIMAGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVRDDPVFRREGSNIHVDAILSIT 354

Query: 359 QAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTN 418
           QAILGGTIQVPTLTGDVVLK+RPGTQPGQKVVLK KGIKT+NS++FGDQYVHFNVSIP N
Sbjct: 355 QAILGGTIQVPTLTGDVVLKIRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPNN 414

Query: 419 LTQRQRELIEEFAKEERGEYDKRAAAGAS 447
           LT+RQRELIEEFAKEE+G++DK+  A AS
Sbjct: 415 LTERQRELIEEFAKEEQGDFDKQRVASAS 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528564|ref|XP_003532871.1| PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/449 (65%), Positives = 354/449 (78%), Gaps = 8/449 (1%)

Query: 1   MVRSNGARLLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFS--LKNA 58
           M+RSNG RLL S    L  L  +   I   V     ++ S+G CN  RV GNFS  + N 
Sbjct: 1   MLRSNGFRLLRSLPEKL--LRHANEPIYDGVCQRGYRTLSSGLCNPSRVIGNFSPNVGNG 58

Query: 59  NNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLH 118
            N +N LL    ++  G  RS+HG+AS+ ARDYY+VLGV+KNA++SEIKKAYYGLAKKLH
Sbjct: 59  VNLKNLLLFGAADTYWGTSRSVHGSASL-ARDYYEVLGVSKNASSSEIKKAYYGLAKKLH 117

Query: 119 PDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPF 178
           PDTNKDDP+AEKKFQEVS AYEVLKD+EKR  YDQVGH+ +V+QE+  G G   GF NPF
Sbjct: 118 PDTNKDDPKAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDVYVNQESTSGFGGNSGF-NPF 176

Query: 179 QDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV 238
           + +F   +    ++ F   + G+DVK  +ELSFMEAV+GC KT+TF+TE+ C  CGG GV
Sbjct: 177 EQMFRDHDFV--KNFFHQNIGGEDVKTFIELSFMEAVRGCNKTITFETEVLCNTCGGSGV 234

Query: 239 PPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSV 298
           PPG +PE CRRCKGSG+  + +G   +  TC  C GTG I++N+CKSCKG +V+KG+KSV
Sbjct: 235 PPGTRPETCRRCKGSGVTFVQTGIFRMESTCGTCKGTGKIVSNFCKSCKGTKVIKGTKSV 294

Query: 299 KLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVT 358
           KLDIM G+DNNET+KV+RSGGADPDG+ PGDLYVTIKVREDPVFRREG+NIHVD+VLS+T
Sbjct: 295 KLDIMAGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVREDPVFRREGSNIHVDAVLSIT 354

Query: 359 QAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTN 418
           QAILGGTIQVPTLTGDVVLK+RPGTQPGQKVVLK KGIKT+NS++FGDQYVHFNVSIP N
Sbjct: 355 QAILGGTIQVPTLTGDVVLKIRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPNN 414

Query: 419 LTQRQRELIEEFAKEERGEYDKRAAAGAS 447
           LT+RQRELIEEFAKEE+G++DK+  A AS
Sbjct: 415 LTERQRELIEEFAKEEQGDFDKQRVASAS 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104011|ref|XP_002313281.1| predicted protein [Populus trichocarpa] gi|222849689|gb|EEE87236.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 303/454 (66%), Positives = 354/454 (77%), Gaps = 32/454 (7%)

Query: 1   MVRSNGARLLHSWTRN---LNLLEDSRNSIIKTVIGGCSKSFS--TGPCNQFRVSGNFSL 55
           MVRS G +L+    R     NLLEDS +S+ K+V+ G  +  S   G  N  R  GN + 
Sbjct: 1   MVRSRGVKLVGWLARRSLPFNLLEDSADSVYKSVLSGSFRRLSGAAGVYNPVRSFGNHTH 60

Query: 56  KNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAK 115
           KN N  +NWLLL  LN+N G  RSIHG+A MS +DYYDVLG++KNA+AS+IKKAYYGLAK
Sbjct: 61  KNVN-QKNWLLLGALNANFGAARSIHGSAHMS-KDYYDVLGISKNASASDIKKAYYGLAK 118

Query: 116 KLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN--GGPGHEGG 173
           KLHPDTNKDDPEAEKKFQEVSKAYEVLKDD+KR  YDQ+GH+AF +Q+    GGPG E  
Sbjct: 119 KLHPDTNKDDPEAEKKFQEVSKAYEVLKDDQKREQYDQLGHDAFENQDNYQPGGPGFE-- 176

Query: 174 FGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEAC 233
             +PF D F ME+                  V++ELSFMEAVQGCTKT+TFQT++ CEAC
Sbjct: 177 --SPFGDFFRMED------------------VSIELSFMEAVQGCTKTITFQTDVACEAC 216

Query: 234 GGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVK 293
           GGEGVPPGVKP+ C+RCKG G+ S   GF S  QTC QCGGTG  ++++C+SC G +VV+
Sbjct: 217 GGEGVPPGVKPQMCKRCKGRGVISTQKGFFSFQQTCDQCGGTGQTVSSFCRSCHGRKVVR 276

Query: 294 GSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDS 353
           GSK++ L+I  GVD+NET+K+ RSGGADP+ NQPGDLYVTIKVREDPVFRREG+NIHVD+
Sbjct: 277 GSKTISLNIPTGVDDNETMKLPRSGGADPEKNQPGDLYVTIKVREDPVFRREGSNIHVDA 336

Query: 354 VLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNV 413
           VL +TQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIK R S+SFGDQ+VHFNV
Sbjct: 337 VLGITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKARASYSFGDQFVHFNV 396

Query: 414 SIPTNLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
            IPT LT RQRELIEEFAKEE+GE DKR AAGAS
Sbjct: 397 KIPTTLTPRQRELIEEFAKEEQGECDKR-AAGAS 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239582692|dbj|BAH70368.1| DnaJ-like protein [Nicotiana tabacum]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 298/456 (65%), Positives = 352/456 (77%), Gaps = 22/456 (4%)

Query: 1   MVRSNGARLLHSWTRNLNLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKNANN 60
           MV SN  R+ H   R       S  S++K   GGC + ++T   NQ R  G F L N+NN
Sbjct: 1   MVSSNALRIAHRIAR----CTFSSGSLLK---GGCRR-YNTAVYNQTR--GLFYL-NSNN 49

Query: 61  ----HRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKK 116
                R+WL   L  +N G  RSIHGTA+ S +D+Y+VLGVN+NATASEIKKAYYGLAK+
Sbjct: 50  GGSERRDWLRPGLFKANFGATRSIHGTAT-SMKDFYEVLGVNRNATASEIKKAYYGLAKR 108

Query: 117 LHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFG- 175
           LHPD NKDDP+AEKKFQEV KAYEVLKDD+ R  YDQ+GH+AF      GG G       
Sbjct: 109 LHPDMNKDDPDAEKKFQEVQKAYEVLKDDKAREQYDQLGHDAFNSMNNGGGGGAGFDPFG 168

Query: 176 ---NPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEA 232
              +PF+D+F   +IF   +IF   M G+DVKV +ELSFMEAVQGCTKT+TFQT+LPC A
Sbjct: 169 GFRSPFEDMFRNADIFG--NIFNRDMGGEDVKVPIELSFMEAVQGCTKTITFQTDLPCTA 226

Query: 233 CGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVV 292
           CGG GVPPG +PE C+RCKGSG+    +G  ++  TC  C GTG I++++CKSCKG RV+
Sbjct: 227 CGGTGVPPGTRPETCKRCKGSGVSISQTGPFTLQTTCPACKGTGKIVSSFCKSCKGNRVL 286

Query: 293 KGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD 352
           +G K+VK+DIMPGVD +ETLKV+ SGGADP+GN+PGDLYV IKVREDPVFRREG++IHVD
Sbjct: 287 RGPKTVKVDIMPGVDTDETLKVYGSGGADPEGNRPGDLYVVIKVREDPVFRREGSDIHVD 346

Query: 353 SVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFN 412
           +VLSVTQAILGGTIQ+PTLTGDVV+KVR GTQPGQKVVLK KGIK RNSFSFGDQ+VHFN
Sbjct: 347 AVLSVTQAILGGTIQIPTLTGDVVVKVRAGTQPGQKVVLKKKGIKGRNSFSFGDQFVHFN 406

Query: 413 VSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGASR 448
           VSIPTNLT RQR+LIEEFAKEE+GEYDK AAAGASR
Sbjct: 407 VSIPTNLTPRQRQLIEEFAKEEQGEYDKGAAAGASR 442

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795411|ref|XP_002865590.1| hypothetical protein ARALYDRAFT_494855 [Arabidopsis lyrata subsp. lyrata] gi|297311425|gb|EFH41849.1| hypothetical protein ARALYDRAFT_494855 [Arabidopsis lyrata subsp. lyrata]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/460 (63%), Positives = 352/460 (76%), Gaps = 17/460 (3%)

Query: 1   MVRSNGARLLHSWTRNL---NLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKN 57
           MV SNGA++L   TR     +LL+D  N  ++ V  G  +  +TG  N  +V G+++ K+
Sbjct: 1   MVPSNGAKVLRLLTRRCLSSSLLQDLGNQKLRGVCIGGYRRLNTGVGNHAKVLGDYASKS 60

Query: 58  ANNHRNWLLLRLLNSNLGGLRSIHGTAS--MSARDYYDVLGVNKNATASEIKKAYYGLAK 115
            ++ R W+     N+N G  RS HGT S  MSA+DYY +LGV+KNA   EIKKAYYGLAK
Sbjct: 61  GHD-RKWINFGAFNTNFGSTRSFHGTGSSFMSAKDYYSILGVSKNAPEGEIKKAYYGLAK 119

Query: 116 KLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFG 175
           KLHPD NKDDPEAEKKFQEVSKAYE+LKD EKR +YDQVGHEAF    + G P  +G  G
Sbjct: 120 KLHPDMNKDDPEAEKKFQEVSKAYEILKDKEKRDLYDQVGHEAFEQNASGGFPNDQGFGG 179

Query: 176 -----NPFQDIFNMEN--IFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTEL 228
                NPF DIF   N  IFN   ++R  + GQDVKV ++LSFMEAVQGC+KTVTFQTE+
Sbjct: 180 GGGGFNPF-DIFGSFNGDIFN---MYRQDIGGQDVKVMLDLSFMEAVQGCSKTVTFQTEV 235

Query: 229 PCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKG 288
            C  CGG GVPPG K EKC+ C GSGM S+  G +SI  TC++CGG G   ++ CKSC+G
Sbjct: 236 ACNTCGGHGVPPGTKREKCKACNGSGMTSMRRGMLSIQTTCQKCGGAGQTFSSICKSCRG 295

Query: 289 ARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN 348
           ARVV+G KSVK++I PGVDN++ LKV R GGADP+G+QPGDLYVT+KVREDPVFRREG++
Sbjct: 296 ARVVRGQKSVKVNIDPGVDNSDILKVARVGGADPEGDQPGDLYVTLKVREDPVFRREGSD 355

Query: 349 IHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQY 408
           IHVD+VLSVTQAILGGTIQVPTLTGDVV+KVRPGTQPG KVVL+NKGI+ R S  FGDQY
Sbjct: 356 IHVDAVLSVTQAILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIRARKSTRFGDQY 415

Query: 409 VHFNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGASR 448
           VHFNVSIP N+TQRQREL+EEF+K E+GEY++R A+G+S+
Sbjct: 416 VHFNVSIPANITQRQRELLEEFSKAEQGEYEQRTASGSSQ 455

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553367|gb|AAM62460.1| DnaJ protein-like [Arabidopsis thaliana]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 288/461 (62%), Positives = 350/461 (75%), Gaps = 18/461 (3%)

Query: 1   MVRSNGARLLHSWTRNL---NLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKN 57
           MV SNGA++L   +R     +L++D  N  ++ V  G  +  +T   N   V G+++ K+
Sbjct: 1   MVPSNGAKVLRLLSRRCLSSSLIQDLANQRLRGVCIGSYRRLNTSVGNHANVIGDYASKS 60

Query: 58  ANNHRNWLLLRLLNSNLGGLRSIHGTAS--MSARDYYDVLGVNKNATASEIKKAYYGLAK 115
            + HR W+     N+N G  RS HGT S  MSA+DYY VLGV+KNA   EIKKAYYGLAK
Sbjct: 61  GH-HRKWINFGGFNTNFGSTRSFHGTGSSFMSAKDYYSVLGVSKNAQEGEIKKAYYGLAK 119

Query: 116 KLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFG 175
           KLHPD NKDDPEAE KFQEVSKAYE+LKD EKR +YDQ GHEAF    + G P ++G  G
Sbjct: 120 KLHPDMNKDDPEAETKFQEVSKAYEILKDKEKRDLYDQFGHEAFEQNASGGFPNYQGFGG 179

Query: 176 ------NPFQDIFNMEN--IFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTE 227
                 NPF DIF   N  IFN   ++R  + GQDVKV ++LSFMEAVQGC+KTVTFQTE
Sbjct: 180 GGGGGFNPF-DIFGSFNGDIFN---MYRQDIGGQDVKVLLDLSFMEAVQGCSKTVTFQTE 235

Query: 228 LPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCK 287
           + C  CGG+GVPPG K EKC+ C GSGM S+  G +SI  TC++CGG G   ++ CKSC+
Sbjct: 236 MACNTCGGQGVPPGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAGQTFSSICKSCR 295

Query: 288 GARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGA 347
           GARVV+G KSVK++I PGVDN++TLKV R GGADP+G+QPGDLYVT+KVREDPVFRREG+
Sbjct: 296 GARVVRGQKSVKVNIDPGVDNSDTLKVARVGGADPEGDQPGDLYVTLKVREDPVFRREGS 355

Query: 348 NIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQ 407
           +IHVD+VLSVTQAILGGTIQVPTLTGDVV+KVRPGTQPG KVVL+NKGI+ R S  FGDQ
Sbjct: 356 DIHVDAVLSVTQAILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIRARKSTKFGDQ 415

Query: 408 YVHFNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGASR 448
           YVHFNVSIP N+TQRQREL+EEF+K E+GEY++R A G+S+
Sbjct: 416 YVHFNVSIPANITQRQRELLEEFSKAEQGEYEQRTATGSSQ 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
TAIR|locus:2162692	456	GFA2 "gametophytic factor 2" [	0.995	0.978	0.585	1.2e-134
DICTYBASE|DDB_G0278789	460	DDB_G0278789 "heat shock prote	0.767	0.747	0.416	2.8e-73
TAIR|locus:2032175	427	ATJ1 [Arabidopsis thaliana (ta	0.774	0.812	0.408	6.7e-72
UNIPROTKB|A1A4J9	453	DNAJA3 "DnaJ (Hsp40) homolog,	0.765	0.757	0.376	8.8e-63
UNIPROTKB|J9P8P4	453	DNAJA3 "Uncharacterized protei	0.765	0.757	0.376	1.1e-62
TIGR_CMR|GSU_0034	373	GSU_0034 "chaperone protein dn	0.758	0.911	0.402	1.4e-62
UNIPROTKB|Q96EY1	480	DNAJA3 "DnaJ homolog subfamily	0.765	0.714	0.378	1.8e-62
RGD|1306527	480	Dnaja3 "DnaJ (Hsp40) homolog,	0.765	0.714	0.384	2.3e-62
UNIPROTKB|G3V6I5	480	Dnaja3 "RCG49803, isoform CRA_	0.765	0.714	0.384	2.3e-62
UNIPROTKB|G3V9U3	453	Dnaja3 "Protein Dnaja3" [Rattu	0.765	0.757	0.384	2.3e-62

TAIR|locus:2162692 GFA2 "gametophytic factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 268/458 (58%), Positives = 324/458 (70%)

Query:     1 MVRSNGARLLHSWTRNL---NLLEDSRNSIIKTVIGGCSKSFSTGPCNQFRVSGNFSLKN 57
             MV SNGA++L   +R     +L++D  N  ++ V  G  +  +T   N   V G+++ K+
Sbjct:     1 MVPSNGAKVLRLLSRRCLSSSLIQDLANQKLRGVCIGSYRRLNTSVGNHANVIGDYASKS 60

Query:    58 ANNHRNWXXXXXXXXXXXXXXXIHGTAS--MSARDYYDVLGVNKNATASEIKKAYYGLAK 115
              ++ R W                HGT S  MSA+DYY VLGV+KNA   EIKKAYYGLAK
Sbjct:    61 GHD-RKWINFGGFNTNFGSTRSFHGTGSSFMSAKDYYSVLGVSKNAQEGEIKKAYYGLAK 119

Query:   116 KLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETXXXXXXXXXXX 175
             KLHPD NKDDPEAE KFQEVSKAYE+LKD EKR +YDQVGHEAF  Q             
Sbjct:   120 KLHPDMNKDDPEAETKFQEVSKAYEILKDKEKRDLYDQVGHEAF-EQNASGGFPNDQGFG 178

Query:   176 XXXQDIFNMENIF-NFR-DIF---RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPC 230
                   FN  +IF +F  DIF   R  + GQDVKV ++LSFMEAVQGC+KTVTFQTE+ C
Sbjct:   179 GGGGGGFNPFDIFGSFNGDIFNMYRQDIGGQDVKVLLDLSFMEAVQGCSKTVTFQTEMAC 238

Query:   231 EACXXXXXXXXXXXXXCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGAR 290
               C             C+ C GSGM S+  G +SI  TC++CGG G   ++ CKSC+GAR
Sbjct:   239 NTCGGQGVPPGTKREKCKACNGSGMTSLRRGMLSIQTTCQKCGGAGQTFSSICKSCRGAR 298

Query:   291 VVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH 350
             VV+G KSVK+ I PGVDN++TLKV R GGADP+G+QPGDLYVT+KVREDPVFRREG++IH
Sbjct:   299 VVRGQKSVKVTIDPGVDNSDTLKVARVGGADPEGDQPGDLYVTLKVREDPVFRREGSDIH 358

Query:   351 VDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVH 410
             VD+VLSVTQAILGGTIQVPTLTGDVV+KVRPGTQPG KVVL+NKGI+ R S  FGDQYVH
Sbjct:   359 VDAVLSVTQAILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIRARKSTKFGDQYVH 418

Query:   411 FNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGASR 448
             FNVSIP N+TQRQREL+EEF+K E+GEY++R A G+S+
Sbjct:   419 FNVSIPANITQRQRELLEEFSKAEQGEYEQRTATGSSQ 456

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0000740 "nuclear membrane fusion" evidence=IMP

GO:0010198 "synergid death" evidence=IMP

GO:0051085 "chaperone mediated protein folding requiring cofactor" evidence=IGI

GO:0000741 "karyogamy" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009558 "embryo sac cellularization" evidence=IMP

GO:0010197 "polar nucleus fusion" evidence=IMP

DICTYBASE|DDB_G0278789 DDB_G0278789 "heat shock protein DnaJ family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 149/358 (41%), Positives = 215/358 (60%)

Query:    89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
             RD Y+VLGV+++A+  +IKKA+Y LAKK HPDTN+DDP A K F E+S AY+VL DD+KR
Sbjct:    73 RDLYEVLGVSRDASKQDIKKAFYALAKKYHPDTNRDDPNAHKTFAEISNAYDVLYDDKKR 132

Query:   149 SVYDQVGHEAFVHQ--ETXXXXXXXXXXXXXXQDIFNMENIFNFRDIF---------RNR 197
             SVYD  GH+    +  E               +D+F     F+  D+F         +  
Sbjct:   133 SVYDTAGHQGATQENMEHGGFPGGMGGQNVNLEDLFG--GGFDLNDLFGGGGGGGGGKKS 190

Query:   198 MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGMES 257
               G D++V + L FMEAV G  K ++F     C  C             C++C G+G ++
Sbjct:   191 SVGADMEVNLHLDFMEAVNGAEKDISFYGGTKCTPCDGSGAKPGTKPQTCKQCGGTGSQT 250

Query:   258 IHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS 317
               +GF  +   CR C GTG +I   C SCKG  + +G ++V + +  G++N  T+K+   
Sbjct:   251 RSNGFFHMATNCRACKGTGKVIKEPCSSCKGKGITQGERTVNIKVPAGINNGTTIKLAGE 310

Query:   318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVL 377
             G     G + G+L+V I V E  +FRR+G +IH+D  ++++QAILG T+ +PTL+G+V L
Sbjct:   311 GEPSKTGRR-GNLFVHITVSEHELFRRQGNDIHLDVPITISQAILGDTVSIPTLSGEVEL 369

Query:   378 KVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER 435
             KV  GTQP +K VLK KG++  NS  FG Q+VHF VSIP N+ Q+Q+ELI+EF +EE+
Sbjct:   370 KVPKGTQPNEKRVLKGKGVRFVNSTEFGSQFVHFIVSIPKNINQKQQELIKEFDQEEK 427

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

TAIR|locus:2032175 ATJ1 [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 147/360 (40%), Positives = 218/360 (60%)

Query:    80 IHGTA--SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSK 137
             IH T   + SAR+YYDVLGV+  AT  EIKK+++ LAKK HPDTN+++P A++KFQE+ +
Sbjct:    36 IHATGINNSSARNYYDVLGVSPKATREEIKKSFHELAKKFHPDTNRNNPSAKRKFQEIRE 95

Query:   138 AYEVLKDDEKRSVYD--QVGHEAFVHQETXXXXXXXXXXXXXXQDIFNMENIFNFRDIFR 195
             AYE L + E+R  YD  Q  +  +V+ +                D F+   IF+  +IF 
Sbjct:    96 AYETLGNSERREEYDKLQYRNSDYVNNDGGDSERFRRAYQSNFSDTFH--KIFS--EIFE 151

Query:   196 NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGM 255
             N     D++V + LS  EA +GCTK ++F   + C++C             C  C+G G 
Sbjct:   152 NNQIKPDIRVELSLSLSEAAEGCTKRLSFDAYVFCDSCDGLGHPSDAAMSICPTCRGVGR 211

Query:   256 ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315
              +I         +C+ C GTGHII  +C SC+G+ +V+G+K+ +L I  GV++  T+ + 
Sbjct:   212 VTIPP----FTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPGGVESEATITIV 267

Query:   316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDV 375
              +G      +QPG+LY+ +KV  D  F R+G++I+VD+ +S TQAILGG + VPTL+G +
Sbjct:   268 GAGNVSSRTSQPGNLYIKLKVANDSTFTRDGSDIYVDANISFTQAILGGKVVVPTLSGKI 327

Query:   376 VLKVRPGTQPGQKVVLKNKGIKTRNSF-SFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434
              L +  GTQP Q +VL+ KG+  +  F   GDQYV F V+ PT + +RQR ++EEFAKEE
Sbjct:   328 QLDIPKGTQPDQLLVLRGKGLPKQGFFVDHGDQYVRFRVNFPTEVNERQRAILEEFAKEE 387

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|A1A4J9 DNAJA3 "DnaJ (Hsp40) homolog, subfamily A, member 3" [Bos taurus (taxid:9913)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 135/359 (37%), Positives = 205/359 (57%)

Query:    81 HGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
             H +  ++  DYY +LGV +NA+  EIKKAYY LAKK HPDTNKDDP+A++KF ++++AYE
Sbjct:    84 HTSTHLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 143

Query:   141 VLKDDEKRSVYDQVGHEAF-----VHQETXXXXXXXXXXXXXXQDIFNMENIFNFRDIFR 195
             VL D+ KR  YD  G   F        ++              + IF   +  +F D F+
Sbjct:   144 VLSDEVKRKQYDTYGSAGFDPGAGSSGQSYWKGGPTVDPEELFRKIFGEFSSSSFGD-FQ 202

Query:   196 NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGM 255
             + +  Q  +  ++L+F +A +G  K  T      CE C             C  C GSGM
Sbjct:   203 S-VFNQPQEYIMDLTFNQAAKGVNKEFTVNITDTCERCDGKGNEPGTKVQHCHYCGGSGM 261

Query:   256 ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315
             E+I++G   +  TCR+CGG G IIT+ C  C+GA   K  K V + +  GV++ +T+++ 
Sbjct:   262 ETINTGPFVMRSTCRRCGGRGSIITSPCVVCRGAGQAKQKKKVVIPVPAGVEDGQTVRM- 320

Query:   316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDV 375
                   P G +  ++++T +V++ PVFRR+GA+IH D  +S+ QAILGGT +   L   +
Sbjct:   321 ------PVGKR--EIFITFRVQKSPVFRRDGADIHSDLFISIAQAILGGTARTQGLYETI 372

Query:   376 VLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434
              + + PGTQ  QK+ +  KGI   NS+ +GD Y+H  + +P  LT RQ+ LI  +A++E
Sbjct:   373 NVTIPPGTQSDQKIRMSGKGIPRINSYGYGDHYIHIKIRVPKRLTSRQQSLILSYAEDE 431

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=IEA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005133 "interferon-gamma receptor binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9P8P4 DNAJA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 135/359 (37%), Positives = 205/359 (57%)

Query:    81 HGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
             H ++ ++  DYY +LGV +NA+  EIKKAYY LAKK HPDTNKDDP+A++KF ++++AYE
Sbjct:    84 HTSSPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 143

Query:   141 VLKDDEKRSVYDQVGHEAF-----VHQETXXXXXXXXXXXXXXQDIFNMENIFNFRDIFR 195
             VL D+ KR  YD  G   F        ++              + IF   +  +F D F+
Sbjct:   144 VLSDEVKRKQYDAYGSAGFDPGAGSSGQSYWKGGPTVDPEELFRKIFGEFSSSSFGD-FQ 202

Query:   196 NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGM 255
             + +  Q  +  +EL+F +A +G  K  T      CE C             C  C GSGM
Sbjct:   203 S-VFNQPQEYIMELTFNQAAKGVNKEFTVNITDTCERCDGKGNEPGTKMQNCHYCGGSGM 261

Query:   256 ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315
             E+I++G   +  TCR+CGG G IIT+ C  C+GA   K  K V + +  GV++ +T+++ 
Sbjct:   262 ETINTGPFVMRSTCRRCGGRGSIITSPCVVCRGAGQAKQKKKVMIPVPAGVEDGQTVRM- 320

Query:   316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDV 375
                   P G +  ++++T +V++ PVFRR+GA+IH D  +S+ QAILGGT +   L   +
Sbjct:   321 ------PVGKR--EIFITFRVQKSPVFRRDGADIHSDLFISIAQAILGGTARAQGLYETI 372

Query:   376 VLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434
              + + PG Q  QK+ +  KGI   NS+ +GD Y+H  + +P  LT RQ+ LI  +A++E
Sbjct:   373 NVTIPPGIQSDQKIRMSGKGIPRINSYGYGDHYIHIKIRVPKRLTSRQQSLILSYAEDE 431

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

TIGR_CMR|GSU_0034 GSU_0034 "chaperone protein dnaJ" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 141/350 (40%), Positives = 194/350 (55%)

Query:    89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
             RDYY+VLGV+KNA+ +EIKKA+  LA + HPD N DD EAE+KF+E+++AYEVL D +KR
Sbjct:     6 RDYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKR 65

Query:   149 SVYDQVGHEAFVHQETXXXXXXXXXXXXXXQDIFNMENIFNFRDIF--RNRMS----GQD 202
             + YDQ GH                       DIF   +IF   DIF  R R S    G D
Sbjct:    66 AQYDQFGHAGVGAGGFSGGGFGGFGAGTPFGDIFG--DIFG--DIFGGRPRGSRGRRGDD 121

Query:   203 VKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGMESIHSGF 262
             ++  +ELSF EA  G  K +       C  C             C  C+G+G      GF
Sbjct:   122 LQYNMELSFEEAAFGAEKEIQVPYGKRCGDCGGSGAKPGTEPKVCPTCRGAGQVRFQQGF 181

Query:   263 MSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADP 322
              S+++TC  C G G ++ N C SC+G+ +++ +K++ + +  GV+    LK+   GG   
Sbjct:   182 FSVSKTCNHCNGEGRVVENPCTSCRGSGMIRDTKTLSVKVPAGVETGTRLKLSGEGGQGI 241

Query:   323 DGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPG 382
              G   GDLYV I VRE P+F RE  ++  +  +S  QA LG  I+VPTL G V +K+  G
Sbjct:   242 KGGGNGDLYVAIAVREHPIFTREDNDVLCEIPVSFVQAALGCEIEVPTLDGKVSMKIPEG 301

Query:   383 TQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAK 432
             TQ G+   L+ KG+     +  GDQ V   V  P+NL +RQREL+EEFA+
Sbjct:   302 TQSGRIFRLRGKGVPQLQGYGRGDQLVIIKVETPSNLNKRQRELLEEFAR 351

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|Q96EY1 DNAJA3 "DnaJ homolog subfamily A member 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 136/359 (37%), Positives = 204/359 (56%)

Query:    81 HGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
             H +A ++  DYY +LGV +NA+  EIKKAYY LAKK HPDTNKDDP+A++KF ++++AYE
Sbjct:    84 HTSAPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 143

Query:   141 VLKDDEKRSVYDQVGHEAFV-----HQETXXXXXXXXXXXXXXQDIFNMENIFNFRDIFR 195
             VL D+ KR  YD  G   F       Q +              + IF   +  +F D F+
Sbjct:   144 VLSDEVKRKQYDAYGSAGFDPGASGSQHSYWKGGPTVDPEELFRKIFGEFSSSSFGD-FQ 202

Query:   196 NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGM 255
               +  Q  +  +EL+F +A +G  K  T      CE C             C  C GSGM
Sbjct:   203 T-VFDQPQEYFMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGM 261

Query:   256 ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315
             E+I++G   +  TCR+CGG G II + C  C+GA   K  K V + +  GV++ +T+++ 
Sbjct:   262 ETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRVMIPVPAGVEDGQTVRM- 320

Query:   316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDV 375
                   P G +  ++++T +V++ PVFRR+GA+IH D  +S+ QA+LGGT +   L   +
Sbjct:   321 ------PVGKR--EIFITFRVQKSPVFRRDGADIHSDLFISIAQALLGGTARAQGLYETI 372

Query:   376 VLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434
              + + PGTQ  QK+ +  KGI   NS+ +GD Y+H  + +P  LT RQ+ LI  +A++E
Sbjct:   373 NVTIPPGTQTDQKIRMGGKGIPRINSYGYGDHYIHIKIRVPKRLTSRQQSLILSYAEDE 431

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;IDA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0005133 "interferon-gamma receptor binding" evidence=IDA

GO:0034341 "response to interferon-gamma" evidence=IDA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0008385 "IkappaB kinase complex" evidence=IDA

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0050821 "protein stabilization" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IDA

GO:0007528 "neuromuscular junction development" evidence=IDA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=ISS

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0031594 "neuromuscular junction" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

RGD|1306527 Dnaja3 "DnaJ (Hsp40) homolog, subfamily A, member 3" [Rattus norvegicus (taxid:10116)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 138/359 (38%), Positives = 203/359 (56%)

Query:    81 HGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
             H +AS++  DYY +LGV +NA+  +IKKAYY LAKK HPDTNKDDP+A++KF ++++AYE
Sbjct:    84 HTSASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 143

Query:   141 VLKDDEKRSVYDQVGHEAFVHQETXXXXXXXXXXXXXXQD-----IFNMENIFNFRDIFR 195
             VL D+ KR  YD  G   F    +               +     IF   +   F D F+
Sbjct:   144 VLSDEVKRKQYDAYGSAGFDPGASSSGQGYWRGGPSVDPEELFRKIFGEFSSSPFGD-FQ 202

Query:   196 NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGM 255
             N +  Q  +  +EL+F +A +G  K  T      CE C             C  C GSGM
Sbjct:   203 N-VFDQPQEYIMELTFNQAAKGVNKEFTVNIMDTCERCDGKGNEPGTKVQHCHYCSGSGM 261

Query:   256 ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315
             E+I++G   +  TCR+CGG G IITN C  C+GA   K  K V + +  GV++ +T+++ 
Sbjct:   262 ETINTGPFVMRSTCRRCGGRGSIITNPCVVCRGAGQAKQKKRVTVPVPAGVEDGQTVRM- 320

Query:   316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDV 375
                   P G +  +++VT +V++ PVFRR+GA+IH D  +S+ QAILGGT +   L   +
Sbjct:   321 ------PVGKR--EIFVTFRVQKSPVFRRDGADIHSDLFISIAQAILGGTAKAQGLYETI 372

Query:   376 VLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434
              + +  G Q  QK+ L  KGI   NS+ +GD Y+H  + +P  L+ RQ+ LI  +A++E
Sbjct:   373 NVTIPAGIQTDQKIRLTGKGIPRINSYGYGDHYIHIKIRVPKRLSSRQQNLILSYAEDE 431

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0005083 "small GTPase regulator activity" evidence=ISO

GO:0005133 "interferon-gamma receptor binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006264 "mitochondrial DNA replication" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0006924 "activation-induced cell death of T cells" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=ISO

GO:0007528 "neuromuscular junction development" evidence=ISO

GO:0007569 "cell aging" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008219 "cell death" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0009790 "embryo development" evidence=ISO

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0030971 "receptor tyrosine kinase binding" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0033077 "T cell differentiation in thymus" evidence=ISO

GO:0034341 "response to interferon-gamma" evidence=ISO

GO:0042102 "positive regulation of T cell proliferation" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=ISO

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

GO:0051059 "NF-kappaB binding" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=ISO

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=ISO

GO:0005884 "actin filament" evidence=ISO

GO:0008385 "IkappaB kinase complex" evidence=ISO

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=ISO

UNIPROTKB|G3V6I5 Dnaja3 "RCG49803, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 138/359 (38%), Positives = 203/359 (56%)

Query:    81 HGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
             H +AS++  DYY +LGV +NA+  +IKKAYY LAKK HPDTNKDDP+A++KF ++++AYE
Sbjct:    84 HTSASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 143

Query:   141 VLKDDEKRSVYDQVGHEAFVHQETXXXXXXXXXXXXXXQD-----IFNMENIFNFRDIFR 195
             VL D+ KR  YD  G   F    +               +     IF   +   F D F+
Sbjct:   144 VLSDEVKRKQYDAYGSAGFDPGASSSGQGYWRGGPSVDPEELFRKIFGEFSSSPFGD-FQ 202

Query:   196 NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGM 255
             N +  Q  +  +EL+F +A +G  K  T      CE C             C  C GSGM
Sbjct:   203 N-VFDQPQEYIMELTFNQAAKGVNKEFTVNIMDTCERCDGKGNEPGTKVQHCHYCSGSGM 261

Query:   256 ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315
             E+I++G   +  TCR+CGG G IITN C  C+GA   K  K V + +  GV++ +T+++ 
Sbjct:   262 ETINTGPFVMRSTCRRCGGRGSIITNPCVVCRGAGQAKQKKRVTVPVPAGVEDGQTVRM- 320

Query:   316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDV 375
                   P G +  +++VT +V++ PVFRR+GA+IH D  +S+ QAILGGT +   L   +
Sbjct:   321 ------PVGKR--EIFVTFRVQKSPVFRRDGADIHSDLFISIAQAILGGTAKAQGLYETI 372

Query:   376 VLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434
              + +  G Q  QK+ L  KGI   NS+ +GD Y+H  + +P  L+ RQ+ LI  +A++E
Sbjct:   373 NVTIPAGIQTDQKIRLTGKGIPRINSYGYGDHYIHIKIRVPKRLSSRQQNLILSYAEDE 431

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005133 "interferon-gamma receptor binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IEA

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=IEA

UNIPROTKB|G3V9U3 Dnaja3 "Protein Dnaja3" [Rattus norvegicus (taxid:10116)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 138/359 (38%), Positives = 203/359 (56%)

Query:    81 HGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
             H +AS++  DYY +LGV +NA+  +IKKAYY LAKK HPDTNKDDP+A++KF ++++AYE
Sbjct:    84 HTSASLAKDDYYQILGVPRNASQKDIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYE 143

Query:   141 VLKDDEKRSVYDQVGHEAFVHQETXXXXXXXXXXXXXXQD-----IFNMENIFNFRDIFR 195
             VL D+ KR  YD  G   F    +               +     IF   +   F D F+
Sbjct:   144 VLSDEVKRKQYDAYGSAGFDPGASSSGQGYWRGGPSVDPEELFRKIFGEFSSSPFGD-FQ 202

Query:   196 NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGM 255
             N +  Q  +  +EL+F +A +G  K  T      CE C             C  C GSGM
Sbjct:   203 N-VFDQPQEYIMELTFNQAAKGVNKEFTVNIMDTCERCDGKGNEPGTKVQHCHYCSGSGM 261

Query:   256 ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315
             E+I++G   +  TCR+CGG G IITN C  C+GA   K  K V + +  GV++ +T+++ 
Sbjct:   262 ETINTGPFVMRSTCRRCGGRGSIITNPCVVCRGAGQAKQKKRVTVPVPAGVEDGQTVRM- 320

Query:   316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDV 375
                   P G +  +++VT +V++ PVFRR+GA+IH D  +S+ QAILGGT +   L   +
Sbjct:   321 ------PVGKR--EIFVTFRVQKSPVFRRDGADIHSDLFISIAQAILGGTAKAQGLYETI 372

Query:   376 VLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434
              + +  G Q  QK+ L  KGI   NS+ +GD Y+H  + +P  L+ RQ+ LI  +A++E
Sbjct:   373 NVTIPAGIQTDQKIRLTGKGIPRINSYGYGDHYIHIKIRVPKRLSSRQQNLILSYAEDE 431

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	448
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-139
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-138
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-133
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-106
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-105
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	5e-99
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-98
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-97
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	9e-96
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	9e-92
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-88
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-88
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-86
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	7e-84
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-83
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	6e-83
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	9e-82
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	8e-81
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-80
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	4e-79
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-78
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-78
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	4e-78
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	2e-75
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	4e-67
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-66
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-65
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	2e-60
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	5e-52
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-46
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-45
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-34
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	5e-28
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-27
pfam01556	81	pfam01556, DnaJ_C, DnaJ C terminal domain	3e-25
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-22
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	5e-21
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-19
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	1e-18
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	1e-17
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	8e-15
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	3e-10
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	6e-08
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	2e-07
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-06
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	1e-04
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	2e-04
cd10747	158	cd10747, DnaJ_C, C-terminal substrate binding doma	0.001
cd10719	65	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H	0.001
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	0.002
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	0.002
pfam00684	65	pfam00684, DnaJ_CXXCXGXG, DnaJ central domain	0.003

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  403 bits (1038), Expect = e-139
 Identities = 154/357 (43%), Positives = 201/357 (56%), Gaps = 15/357 (4%)

Query: 90  DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRS 149
           DYY++LGV+K+A+  EIKKAY  LAKK HPD NKD  EAE+KF+E+++AYEVL D EKR+
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD-KEAEEKFKEINEAYEVLSDPEKRA 59

Query: 150 VYDQVGHEAFVHQETNGGPGHE-------GGFGNPFQDIFNMENIFNFRDIFRNR-MSGQ 201
            YDQ GH  F      GG G         G FG+ F D F        R   R+    G+
Sbjct: 60  QYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGGGSGRRR--RSGPRRGE 117

Query: 202 DVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHS- 260
           D++  +EL+F EAV G  K +    +  CE C G G  PG  P+ C  C G+G       
Sbjct: 118 DLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQG 177

Query: 261 ---GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS 317
              GF    QTC  CGG G II   C +CKG   VK  K++ + I  GVD  + L+V   
Sbjct: 178 TPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGK 237

Query: 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVL 377
           G A  +G   GDLYV I+V+   +F R+G +++++  +S TQAILGG I+VPTL GDV L
Sbjct: 238 GNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKL 297

Query: 378 KVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE 434
           K+  GTQ G    LK KG+        GD  V   V  P NL++ Q+EL+EE A+  
Sbjct: 298 KIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAEAS 354

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  400 bits (1031), Expect = e-138
 Identities = 156/362 (43%), Positives = 209/362 (57%), Gaps = 10/362 (2%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+ RDYY++LGV+K+A+  EIKKAY  LAKK HPD N  D EAE+KF+E+++AYEVL D 
Sbjct: 1   MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDP 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIF---NFRDIFRNRM-SGQ 201
           EKR+ YDQ GH  F  +    G    GGFG  F DIF  E+ F          NR   G 
Sbjct: 61  EKRAAYDQFGHAGF--KAGGFGGFGFGGFGGDFGDIF--EDFFGGGGGGRRRPNRPRRGA 116

Query: 202 DVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGM--ESIH 259
           D++  +E++  EAV G  K +     + C  C G G  PG  P+ C  C GSG       
Sbjct: 117 DLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQR 176

Query: 260 SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGG 319
           +GF S  QTC  C GTG II + C  CKG   VK  KS+ ++I  GVD+ + +++   G 
Sbjct: 177 TGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGE 236

Query: 320 ADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKV 379
           A P+G   GDLYV + V+  P+F R+G +++ +  +S T+A LGG I+VPTL G V LK+
Sbjct: 237 AGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKI 296

Query: 380 RPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYD 439
             GTQ G+   L+ KG+    S   GD YV   V  P NL+  Q+EL+EEFAK      +
Sbjct: 297 PAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSLGEGPE 356

Query: 440 KR 441
           + 
Sbjct: 357 QS 358

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  388 bits (999), Expect = e-133
 Identities = 155/356 (43%), Positives = 210/356 (58%), Gaps = 16/356 (4%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+ RDYY+VLGV++NA+  EIKKAY  LA K HPD N  D EAE+KF+E+ +AYEVL D 
Sbjct: 1   MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDP 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIF--------RNR 197
           +KR+ YDQ GH AF      GG G  GGFG+ F DIF         DIF        +  
Sbjct: 61  QKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFG--------DIFGGGRGGGRQRA 112

Query: 198 MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMES 257
             G D++  +E++  EAV+G TK +   T + C+ C G G  PG  P+ C  C G+G   
Sbjct: 113 RRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVR 172

Query: 258 IHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS 317
           +  GF ++ QTC  C G G II + CK C G   V+  K++ + I  GVD  + +++   
Sbjct: 173 MQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGE 232

Query: 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVL 377
           G A   G   GDLYV I V+E P+F R+G +++ +  +S T A LGG I+VPTL G V L
Sbjct: 233 GEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKL 292

Query: 378 KVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433
           K+  GTQ G+   L+ KG+K+  S + GD Y    V  P NLT+RQ+EL+EEF + 
Sbjct: 293 KIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFEES 348

Length = 371

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  319 bits (820), Expect = e-106
 Identities = 149/357 (41%), Positives = 199/357 (55%), Gaps = 8/357 (2%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M  RDYY++LGV ++A+  EIKK+Y  LA K HPD N  D EAE+ F+E ++AYEVL D 
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNR-----MSG 200
           +KR +YDQ GHE       +G  G +  F + F DIF  E+ F F    R R      +G
Sbjct: 61  KKRGIYDQYGHEGLSGTGFSGFSGFDDIFSS-FGDIF--EDFFGFGGGRRGRSRTAVRAG 117

Query: 201 QDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHS 260
            D++  + L F+EA  G  K +  Q    CE C G G  PG  P  C +C GSG  +   
Sbjct: 118 ADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ 177

Query: 261 GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGA 320
           GF SI  TC +C G G +I + CK+C G   V+ SK+V++ I  GVD    L++   G A
Sbjct: 178 GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEA 237

Query: 321 DPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVR 380
              G  PGDLYV + V     F R+G ++H    +S  QA LG  I+VPTL G+  LK+ 
Sbjct: 238 GVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIP 297

Query: 381 PGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGE 437
            GTQPG     K KGI +      GDQ +   V +PT LT++Q EL+ EFA+ E  +
Sbjct: 298 KGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFARLESEK 354

Length = 366

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score =  317 bits (814), Expect = e-105
 Identities = 152/357 (42%), Positives = 197/357 (55%), Gaps = 17/357 (4%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+ RDYY+VLGV+K+A+  EIKKAY  L+KK HPD NK+   A++KF+E+S+AYEVL DD
Sbjct: 1   MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDD 59

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFN--FRDIFRNR-----M 198
           +KR+ YDQ GH        N G G  G  G  F   F  E+IF+  F    R R      
Sbjct: 60  QKRAQYDQFGH-----AGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPR 114

Query: 199 SGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESI 258
            G D++  + L+F EAV G  K +    E  C+ C G G  PG   E C  C GSG  S+
Sbjct: 115 QGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSV 174

Query: 259 HS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV 314
                 G +   QTC  C GTG  I   C +C G   V+  K + + I  GVDN + ++V
Sbjct: 175 EQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRV 234

Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD 374
              G    +G   GDLYV  +VR    F R+G +I+ +  L+  QA LG  I+VPTL G 
Sbjct: 235 SGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK 294

Query: 375 VVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFA 431
           V LK+  GTQ G +  LK KG+     +  GDQYV   V  PT LT RQ+EL+ EFA
Sbjct: 295 VKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLREFA 351

Length = 376

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score =  301 bits (772), Expect = 5e-99
 Identities = 147/378 (38%), Positives = 206/378 (54%), Gaps = 27/378 (7%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
            + +DYY++LGV++NAT  EIKKAY  LAKK HPD N  D EAE+KF+E+++AYE+L D 
Sbjct: 2   AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDP 61

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNP--------FQDIFNMENIFNFRDIFRNR 197
           +KR+ YDQ GH AF       G   +GGFG          F DIF  E+IF   D F   
Sbjct: 62  QKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIF--EDIFG--DFFGTG 117

Query: 198 MS--------GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRR 249
                     G D++  +EL+F EA  G  K +  +    C+ C G G  PG KP  C  
Sbjct: 118 RRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPV 177

Query: 250 CKGSGMESIHS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPG 305
           C G+G          G +   +TC +C G G IIT+ C  C G   ++  + +K++I  G
Sbjct: 178 CHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAG 237

Query: 306 VDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGT 365
           +D+ + + +   G     G   GDLY+ IKV+  P+F+REG N++++  ++ T A LGG 
Sbjct: 238 IDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGE 297

Query: 366 IQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRE 425
           I++PTL G V   +  GTQ G K  L+ KGI        GDQ V   + +P  LT++Q+E
Sbjct: 298 IEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKE 357

Query: 426 LIEEFAK---EERGEYDK 440
           L+ EF K   EE  E  K
Sbjct: 358 LLREFEKLSGEEGTESRK 375

Length = 386

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  299 bits (767), Expect = 2e-98
 Identities = 139/345 (40%), Positives = 197/345 (57%), Gaps = 19/345 (5%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           +DYY++LGV++NAT  EIKKAY  LA+K HPD NK+ PEAE+KF+E+++AY+VL D EKR
Sbjct: 3   KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKR 61

Query: 149 SVYDQVGHEAFVHQETN--GGPGHEGGFGNPFQDIF-NMENIFNFRDIF----------- 194
            +YDQ GH AF        G  G     G   +DI  ++ +IF F DIF           
Sbjct: 62  KLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRK 121

Query: 195 --RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKG 252
             +  + G+D+   VE+S  EA  G T ++     +PCEACGG G  PG   + C  C G
Sbjct: 122 TYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGG 181

Query: 253 SGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL 312
           SG      GF  I+QTC  CGG G +    C  C G  +V   +++K+ I PGVDN   L
Sbjct: 182 SGEIYQRGGFFRISQTCPTCGGEGVLREP-CSKCNGRGLVIKKETIKVRIPPGVDNGSKL 240

Query: 313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLT 372
           +V   G A   G  PGDLY+ +KV+  P+F R G N+++D  ++V +A+LG  ++VP L 
Sbjct: 241 RVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLD 300

Query: 373 GDVV-LKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIP 416
           G    +K+ PGT+ G K+ +  KG+       +GD  V  ++ +P
Sbjct: 301 GKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVP 345

Length = 382

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score =  296 bits (761), Expect = 2e-97
 Identities = 142/359 (39%), Positives = 197/359 (54%), Gaps = 16/359 (4%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+  +YYD LGV+K+A+  EIKKAY  L+KK HPD NK+ P AE+K++EV +AYE L D 
Sbjct: 1   MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDP 59

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNP-----FQDIFNMENIFNFRDIFRNRMS- 199
           +KR+ YDQ G  A  +    GG G  GGF        F+DIF+  + F      RN  + 
Sbjct: 60  QKRAAYDQYGA-AGANGGFGGGAGGFGGFDGSGGFGGFEDIFS--SFFGGGGARRNPNAP 116

Query: 200 --GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMES 257
             G D++  V L F EA+ G  K V++  E  C  C G G  PG  P  C +C GSG+ +
Sbjct: 117 RQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVIT 176

Query: 258 IHS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK 313
           + +    G M    TC  C GTG  I   C++C G    K + +V + I  GV+  + ++
Sbjct: 177 VDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIR 236

Query: 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG 373
           +   G A  +G   GDLYV  +V     F R+G+ I+    +S  QA LG T++VPT+ G
Sbjct: 237 LQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHG 296

Query: 374 DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAK 432
           DV LK+  GTQ G+K  L+ KG         GDQ+V  N+  PT L   Q+E ++ FAK
Sbjct: 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKAFAK 355

Length = 380

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score =  292 bits (749), Expect = 9e-96
 Identities = 148/361 (40%), Positives = 201/361 (55%), Gaps = 18/361 (4%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           MS RDYY+VLGV+++A+  EIKKAY  LA + HPD N D+PEAE+KF+E ++AYEVL+D 
Sbjct: 1   MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNP------FQDIFNMENIFNFRDIFRNR-- 197
           EKR+ YD+ GH          G G  GGF +       F DIF   ++F F      R  
Sbjct: 61  EKRARYDRFGHAGV------NGNGGFGGFSSAEDIFSHFSDIFG--DLFGFSGGGSRRGP 112

Query: 198 --MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGM 255
              +G D++  + +SF +A +G   T+     + C+ CGG G  PG  PE CR C GSG 
Sbjct: 113 RPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQ 172

Query: 256 ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF 315
                GF  I   C  C G G +IT+ C  CKG+ +V+ ++ +K+ I  GVD    L++ 
Sbjct: 173 VRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLR 232

Query: 316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDV 375
             G     G  PGDLYV I V +D +F+R+G ++ V   +S  QA LG  I+VPTL   V
Sbjct: 233 GEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPV 292

Query: 376 VLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER 435
            L +  GTQ G+   L+ KG+    S   GD  V  +V  PT LT+RQ EL+ EF   E 
Sbjct: 293 TLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFEALEE 352

Query: 436 G 436
            
Sbjct: 353 E 353

Length = 373

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score =  282 bits (723), Expect = 9e-92
 Identities = 143/359 (39%), Positives = 197/359 (54%), Gaps = 21/359 (5%)

Query: 88  ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEK 147
           A DYY++LGV+++A   E+K+AY  LA+K HPD NK+ P AE +F+E+++AYEVL D E 
Sbjct: 2   AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPET 60

Query: 148 RSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFN---------FRDIFRNRM 198
           R+ YDQ G EA V      G    G  G  F DIF  E  F+          R   R   
Sbjct: 61  RARYDQFG-EAGV--SGAAGFPDMGDMGG-FADIF--ETFFSGFGGAGGQGGRRRRRGPQ 114

Query: 199 SGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGM--E 256
            G D++  ++L F EA+ G  K +       CE C G G  PG  P  C  C G+G    
Sbjct: 115 RGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRR 174

Query: 257 SIHSGFMSINQ--TCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV 314
           +  + F S  Q   C  C GTG +I + C +C G  V + +K +K++I  GVD    L+V
Sbjct: 175 ATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRV 234

Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD 374
              G A   G  PGDLYV + V+ DP FRR+G NI  +  +S  QAILG T++V T+ G 
Sbjct: 235 SGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP 294

Query: 375 VVLKVRPGTQPGQKVVLKNKGI-KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAK 432
           V L +  GTQP   + L+NKG+ +  N  + GD  +   V IPT ++  +REL+E+ AK
Sbjct: 295 VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAK 353

Length = 374

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score =  274 bits (702), Expect = 1e-88
 Identities = 139/367 (37%), Positives = 199/367 (54%), Gaps = 21/367 (5%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+++DYY+VLG+ K A+  EIKKA+  LA K HPD NK + EAE+KF+E+++AY+VL D 
Sbjct: 1   MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGH-EGGFGN-------PFQDIFNMENIFNFRDIFRNR 197
           +K++ YDQ G   F     NG  G   GGFG         F DIF+      F    R R
Sbjct: 61  QKKAQYDQFGTADF-----NGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRR 115

Query: 198 ---MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSG 254
                G D++  + L+F EAV G  K ++      CE C G G  PG  P+ C +C G+G
Sbjct: 116 NGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTG 175

Query: 255 MESIHS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNE 310
              +      G      TC +CGG+G +I + C  C G   V+ ++ +K+++  GVD   
Sbjct: 176 QIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGN 235

Query: 311 TLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPT 370
            + +   G    +G   GDLY+ I+V     F+R+G +I++D  +S  +A LG  I+VPT
Sbjct: 236 VIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPT 295

Query: 371 LTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEF 430
           + G+V  +V  GTQPG    LK KG+   NS   G+QYV   V IP  L  +Q+E +  F
Sbjct: 296 VDGEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTMF 355

Query: 431 AKEERGE 437
             E  GE
Sbjct: 356 M-EASGE 361

Length = 380

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  274 bits (701), Expect = 2e-88
 Identities = 142/376 (37%), Positives = 195/376 (51%), Gaps = 32/376 (8%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
              RDYY+VLGV++NA   EIKKAY  LA+K HPD + ++  AE+KF+E+S+AY VL DD
Sbjct: 2   AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDD 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGN-PFQDIFN-----MENIFNFRDIF----- 194
           EKR  YDQ GH          G   E  F N  F+DIF      + NIF   D+F     
Sbjct: 61  EKRQRYDQFGHAGM------DGFSQEDIFNNINFEDIFQGFGFGIGNIF---DMFGFGGG 111

Query: 195 RNRMS--GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKG 252
                  G D+   VE++  EA  G  K +  +    C  C G    PG + + C  C G
Sbjct: 112 SRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGG 171

Query: 253 SGM-----ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD 307
           +G       +I    M++   C  C G G I+   C +C G  VV+ +K++ + I  GV+
Sbjct: 172 TGQVKQVRNTILGQMMNVTT-CPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVE 230

Query: 308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQ 367
               L+V   G     G +PGDLYV IKV+   +FRREGAN++ +  +S  QA LG T+ 
Sbjct: 231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVD 290

Query: 368 VPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELI 427
           VPT+ G V LK+  GTQ G    LK  G+ +      G+ YV   V +P  L+ +Q+EL+
Sbjct: 291 VPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELL 350

Query: 428 EEFAK---EERGEYDK 440
            EFA    +E     K
Sbjct: 351 REFASISGDEIHHVKK 366

Length = 378

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score =  268 bits (687), Expect = 2e-86
 Identities = 142/374 (37%), Positives = 209/374 (55%), Gaps = 32/374 (8%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKD 144
              +DYY++LGV++NAT  EIK+AY  L K+ HPD + ++  EAE+KF+E+ +AYEVL D
Sbjct: 1   REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD 60

Query: 145 DEKRSVYDQVGH--EAFVHQETNGGPGHEGGFGNPFQDIF-NMENIFNFRDIF------- 194
            +KR++YD+ G+  E   +QET  G    GGF   F+DIF + ENIFN RDIF       
Sbjct: 61  PQKRAMYDRFGYVGEQPPYQETESG----GGF---FEDIFKDFENIFN-RDIFDIFFGER 112

Query: 195 -------RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKC 247
                       G+D++  +E++  + + G    V +     C  CGG GV PG     C
Sbjct: 113 RTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTC 172

Query: 248 RRCKGSGM--ESIHSGF-MSINQ-TCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIM 303
            +C G+G   E   S F + +++ TC +CGGTG I   +C  C G+  ++      + I 
Sbjct: 173 PKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP 232

Query: 304 PGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILG 363
            GV++   L++   G A   G   GDLYV ++VR DP F+R G+++  D  +   QAILG
Sbjct: 233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILG 292

Query: 364 GTIQVPTLTGDVV-LKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQR 422
            T++VP   G    LK+ PGTQP     LK KG+        GD  V+ +V IP  L++ 
Sbjct: 293 TTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSRE 352

Query: 423 QRELIEEFAKEERG 436
           +R+L++E AK +RG
Sbjct: 353 ERKLLKELAK-KRG 365

Length = 369

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score =  261 bits (669), Expect = 7e-84
 Identities = 140/364 (38%), Positives = 205/364 (56%), Gaps = 23/364 (6%)

Query: 88  ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEK 147
           ++DYY +LGV+K A+ +++KKAY  LAK+ HPDT  D  +AEKKF+E++ AY+VLKD++K
Sbjct: 2   SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTT-DAKDAEKKFKEINAAYDVLKDEQK 60

Query: 148 RSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMS-------- 199
           R+ YD+ GH+AF +Q++ GG G+ GGF     DIF         D F + M         
Sbjct: 61  RAAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFG--------DFFSDFMGGSRRSRPT 112

Query: 200 -----GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSG 254
                G D+K  + ++  EA  G  K ++F +E+ C+ C G G   G     C  C G G
Sbjct: 113 SSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG 172

Query: 255 MESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV 314
              +  GF +I Q C +C G G II N CK C G       +++ ++I  GV+N   ++ 
Sbjct: 173 ATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRH 232

Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLT-G 373
              G A   G   GDLYV I ++   +++ +GAN+H    +S   A LGG I+VP +  G
Sbjct: 233 TGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGG 292

Query: 374 DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433
            V L +  GTQ G ++ L++KG+    S   GD   H +V +P NL++RQREL+EEF KE
Sbjct: 293 KVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEFKKE 352

Query: 434 ERGE 437
              E
Sbjct: 353 SINE 356

Length = 372

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score =  261 bits (669), Expect = 2e-83
 Identities = 136/376 (36%), Positives = 198/376 (52%), Gaps = 26/376 (6%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           +DYY VLGV K+AT +EIKKAY  LA++ HPD NK D +AE++F+E+S+AY+VL D++KR
Sbjct: 9   KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKR 68

Query: 149 SVYDQV----GHEAFVHQETNGGPGH-----------------EGGFGNPFQDIFNMENI 187
             YD+     G+  F      GG G                    G G    D+F    +
Sbjct: 69  KEYDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFG--GL 126

Query: 188 FNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKC 247
           FN          G DV+  V LSF EA+ G T  +   ++ PC AC G G   G  P  C
Sbjct: 127 FNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVC 186

Query: 248 RRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD 307
             C G+G  S +SG  S+++ C  C G G I  + C  CKG+   K S+++++ I  GV 
Sbjct: 187 PTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVS 246

Query: 308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQ 367
           + + +++   G     G   GDLYV + V   PVF R G N+ V   ++  +A LG  ++
Sbjct: 247 DGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVR 306

Query: 368 VPTLTG-DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
           VPTL G  V +K+ PGT  G+ + ++ KG   R   + GD  V   V++P +L+ + RE 
Sbjct: 307 VPTLGGPPVTVKLPPGTPNGRVLRVRGKGA-VRKDGTRGDLLVTVEVAVPKDLSGKAREA 365

Query: 427 IEEFAKEERGEYDKRA 442
           +E F +E   + D RA
Sbjct: 366 LEAF-REATADEDPRA 380

Length = 389

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score =  260 bits (665), Expect = 6e-83
 Identities = 140/371 (37%), Positives = 189/371 (50%), Gaps = 25/371 (6%)

Query: 90  DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRS 149
           DYY +LGV+K A+  EIKKAY  LA K HPD N  D EAEK+F+EVS+AYEVL D +KR 
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 150 VYDQVGHEA-FVHQETNGGPGHE-----------------GGFGNPFQDIFN-MENIFNF 190
            YD+ G +  F      GG G                   GG G+ F+ +F  +   F  
Sbjct: 62  SYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM 121

Query: 191 RDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV--PPGVKPEKCR 248
           R        G   KV + LSF EA +G  K +       C+AC G G     G+K   C 
Sbjct: 122 RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIK--VCD 179

Query: 249 RCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDN 308
           RCKGSG      GF S+  TC +CGG G +IT+ C  C+G   +K  +SV + I  GVD+
Sbjct: 180 RCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDS 239

Query: 309 NETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQV 368
              LK+   G A  +G   GDLYV I V   PVF R G ++ ++  +    A LG   ++
Sbjct: 240 GMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEI 299

Query: 369 PTLT--GDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
           PTL   G   L +  G Q G  + ++ +G    +    GD  V  +V  P NL++ Q+EL
Sbjct: 300 PTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKEL 359

Query: 427 IEEFAKEERGE 437
           + +FA  E+ E
Sbjct: 360 LRQFAATEKAE 370

Length = 391

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score =  256 bits (657), Expect = 9e-82
 Identities = 140/382 (36%), Positives = 204/382 (53%), Gaps = 30/382 (7%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           +D+Y  LGV+ +A+A EIKKAY  LA++LHPD N  DP AE++F+ VS+A++VL D  KR
Sbjct: 9   KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68

Query: 149 SVYDQ----VGHEAFVHQETNGGPGHEGGFGNPFQDI-FNMENIF---------NFRDIF 194
             YD+         F  +  +GG G  GGFG       FN+ ++F            D+F
Sbjct: 69  KEYDETRRLFAGGGFGGRRFDGGGGF-GGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLF 127

Query: 195 R---NRMS----------GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPG 241
               NR            G D++    L F+EA +G T  +   +  PC  C G G  PG
Sbjct: 128 GGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPG 187

Query: 242 VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLD 301
             P+ C  C GSG+ S + G    ++ C  C GTG II + C+ CKG  V   ++++ + 
Sbjct: 188 TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVR 247

Query: 302 IMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAI 361
           I PGV++ + +++   G A   G   GDLYVT+ VR D VF R+G ++ V   +S T+  
Sbjct: 248 IPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELA 307

Query: 362 LGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQ 421
           LG T+ VPTL G V +KV  GT  G+ + ++ +G+  R S   GD  V   V++P NL  
Sbjct: 308 LGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLDG 366

Query: 422 RQRELIEEFAKEERGE-YDKRA 442
              E +E +A+ ER   +D RA
Sbjct: 367 AAAEALEAYAEAERASGFDPRA 388

Length = 392

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score =  254 bits (651), Expect = 8e-81
 Identities = 134/367 (36%), Positives = 187/367 (50%), Gaps = 33/367 (8%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
              RDYY+VLGV+K AT  EIKKAY   A + HPD N  D EAE+KF+E ++AY+VL D 
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFN-FRDIF---------- 194
           +KRS YDQ GH         GG    GGF     +  +ME+IF+ F DIF          
Sbjct: 62  DKRSRYDQFGHAGV------GGAAGGGGFS---GEGMSMEDIFSMFGDIFGGHGGGFGGF 112

Query: 195 ---------RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPE 245
                    +    G D++V V+L+  E   G  K    +  +PC  C G G       E
Sbjct: 113 GGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSE 172

Query: 246 KCRRCKGSG----MESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLD 301
            C  CKGSG    +++   G M    TC  C G G II   CK C G  +V G + + + 
Sbjct: 173 TCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVK 232

Query: 302 IMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAI 361
           I  GV     L +   G A   G   GDL V I+    P   R+  ++  + +LSV  A 
Sbjct: 233 IPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAA 292

Query: 362 LGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQ 421
           LGG ++VPT+ G   +K+  GTQPG+ + L+NKG+ + N +  GD  V+ +V IP  L++
Sbjct: 293 LGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSK 352

Query: 422 RQRELIE 428
            +++ +E
Sbjct: 353 EEKQTLE 359

Length = 386

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score =  252 bits (645), Expect = 4e-80
 Identities = 126/359 (35%), Positives = 181/359 (50%), Gaps = 16/359 (4%)

Query: 88  ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEK 147
           ARDYY +LGV++NA+ +EIK+AY  LA++LHPD N  D EA++KF+E+S AYEVL D EK
Sbjct: 2   ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN-PDEEAQEKFKEISVAYEVLSDPEK 60

Query: 148 RSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMS----GQDV 203
           R + D  G    +     GG G  GGFG    D+F  E  F      R        G D 
Sbjct: 61  RRIVDLGGDP--LESAGGGGGGFGGGFGG-LGDVF--EAFFGGGAASRGPRGRVRPGSDS 115

Query: 204 KVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSG-MESIHSGF 262
            + + L   E   G TK VT  T + C+ C G+G     KP  C  C G G ++++   F
Sbjct: 116 LLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSF 175

Query: 263 ---MSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGG 319
              +  ++ C  C G G +I + C  C G   V+  + + + I  GV +   +++   G 
Sbjct: 176 LGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGE 235

Query: 320 ADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLT-GDVVLK 378
             P G   GDLYV +  +   VF R+G ++H    + +  A LG T+ V  +  G   + 
Sbjct: 236 VGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEIT 295

Query: 379 VRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGE 437
           + PGTQPG  + L+ +G+    S   GD + H  V +PT L     EL+ E  K  RG 
Sbjct: 296 IPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLREL-KALRGR 353

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score =  249 bits (638), Expect = 4e-79
 Identities = 145/363 (39%), Positives = 197/363 (54%), Gaps = 14/363 (3%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           MS RDYY+VLGV++NA+  E+KKAY  LA+K HPD NK  P+AE KF+EV +AY+ L D 
Sbjct: 1   MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDP 59

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMS---GQD 202
           +K++ YDQ GH         GG G  GGF     DIF+M   F      RN  +   G D
Sbjct: 60  QKKAHYDQFGHTDPNQGFGGGGAGDFGGFS----DIFDM--FFGGGGGRRNPNAPRQGAD 113

Query: 203 VKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHS-- 260
           ++  + L F EAV G    +    E  C  C G G  PG KPE C  C GSG  ++    
Sbjct: 114 LQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNT 173

Query: 261 --GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSG 318
             G +   + C  C GTG II   C +C G   V+  K + + +  G+D+ + L+V   G
Sbjct: 174 PFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQG 233

Query: 319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLK 378
            A  +G  PGDLYV   V+    F R+G +I+ +  L+  Q  LG  I+VPTL G V LK
Sbjct: 234 EAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLK 293

Query: 379 VRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEY 438
           +  GTQ G    L+ KG+   +    GDQ+V   V  P NLT++++EL+ EFA    G  
Sbjct: 294 IPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREFAGMSGGRP 353

Query: 439 DKR 441
           D++
Sbjct: 354 DEQ 356

Length = 371

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  248 bits (636), Expect = 1e-78
 Identities = 134/376 (35%), Positives = 193/376 (51%), Gaps = 32/376 (8%)

Query: 87  SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
           + RDYY++LG++K+A+  +IKKAY  LA K HPD NK+ P+AE+KF+E+S+AY VL D E
Sbjct: 3   TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAE 61

Query: 147 KRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIF---------RNR 197
           KR+ YD+ GH    +Q +              +DIF   +   F DIF         R R
Sbjct: 62  KRAQYDRFGHAGIDNQYSA-------------EDIFRGADFGGFGDIFEMFFGGGGRRGR 108

Query: 198 MS---GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSG 254
           M    G D++  + ++  EA  G  K +       C  C G G  PG  P++C  C G+G
Sbjct: 109 MGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTG 168

Query: 255 M-----ESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNN 309
                  +    F++   TC  C G G +I + C  C G   V+ ++ + +++  G D+ 
Sbjct: 169 QVTTTRSTPLGQFVTTT-TCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSG 227

Query: 310 ETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVP 369
             LK+   G A   G   GDLY+ + V+E   F R G +I  +  +S TQA LG  I VP
Sbjct: 228 LRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVP 287

Query: 370 TLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEE 429
           TL G V + + PGTQ      LK+KG+   +    GDQ V   V  PT LTQ Q+EL+ E
Sbjct: 288 TLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLRE 347

Query: 430 FAKEERGEYDKRAAAG 445
           F +   G+   +A   
Sbjct: 348 FDELSNGKNPSKAGKK 363

Length = 377

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score =  247 bits (632), Expect = 2e-78
 Identities = 142/367 (38%), Positives = 197/367 (53%), Gaps = 29/367 (7%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           MS R YYD+LGV+K+A   EIK AY  LA K HPD NK + E+E+KF+E ++AYE+L+D 
Sbjct: 1   MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEG-GFGNPFQDIFNMENIFNFRDIFRN-------- 196
           +KR  YDQ G         N G G  G G    F DIF      +F DIF +        
Sbjct: 61  KKRQAYDQFGKAG-----VNAGAGGFGQGAYTDFSDIFG-----DFGDIFGDFFGGGRGG 110

Query: 197 -----RMSG----QDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKC 247
                R SG     D++  +E+S  +A  G    +       C  C G G   G  P  C
Sbjct: 111 GSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTC 170

Query: 248 RRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD 307
             C GSG      GF S+  TC  C G G +I+N CK+C G  + +  +++ + I PGV+
Sbjct: 171 PDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVE 230

Query: 308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQ 367
               LKV   G A P+G   GDLYV   +++  +F R+G ++ +   +S+ QAILG  I+
Sbjct: 231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIE 290

Query: 368 VPTLTGDVV-LKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
           VPT+ G    +K+  GT+ GQ   LK  G+    ++  GDQ+V   + IP  +T+RQREL
Sbjct: 291 VPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQREL 350

Query: 427 IEEFAKE 433
           IEEFA+E
Sbjct: 351 IEEFARE 357

Length = 372

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score =  247 bits (633), Expect = 4e-78
 Identities = 137/373 (36%), Positives = 198/373 (53%), Gaps = 29/373 (7%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           RDYY+VLGV+++A   EIKKAY  LA K HPD N D+ EAE+ F+EV++AYEVL +D+KR
Sbjct: 3   RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62

Query: 149 SVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMEN-------------IFNFRDIF- 194
             YDQ GH        +GG    GG G  F DIF+  N              F F D+F 
Sbjct: 63  RRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFG 122

Query: 195 ----RNRMS----GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEK 246
               R R S    G D+K+ ++L+  E  +G  KT+  + ++PC+ C G G   G   E 
Sbjct: 123 GGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTG-ATET 181

Query: 247 CRRCKGSG-----MESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLD 301
           C  C GSG      +++   F++I   C  CGG G ++ + C +C G  + +G  +VK+ 
Sbjct: 182 CPTCHGSGEVRQASKTMFGQFVNIT-ACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT 240

Query: 302 IMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAI 361
           +  GV +   L +   G A P G  PGDL V I+ +   +F R G ++  +  +S    +
Sbjct: 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLV 300

Query: 362 LGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQ 421
           LG  ++VPTL G V L +  GTQP   + +  KGI        GDQYV  NV +P  ++ 
Sbjct: 301 LGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSH 360

Query: 422 RQRELIEEFAKEE 434
           + +EL++E  K  
Sbjct: 361 QDKELLKELKKSS 373

Length = 397

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score =  239 bits (612), Expect = 2e-75
 Identities = 134/360 (37%), Positives = 201/360 (55%), Gaps = 24/360 (6%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           RDYY++LG++K A+  EIKKAY  +A K HPD NK + EAE  F+E ++AYEVL DD KR
Sbjct: 3   RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKR 62

Query: 149 SVYDQVGHEAFVHQETNGG-PGHEGGFGNPFQDIFNMENIFNFRDIF-----------RN 196
           + YD+ GH AF   E  GG  G  GGF   F DIF      +F DIF           +N
Sbjct: 63  AQYDRFGHTAF---EGGGGFEGFSGGFSG-FSDIFE-----DFGDIFDSFFTGNRGQDKN 113

Query: 197 RM--SGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSG 254
           R    GQD+   +E+S  +A  G    +     + CE+C G+    G  P  C  C GSG
Sbjct: 114 RKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSG 173

Query: 255 MESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV 314
                 GF  +  TC +C G G II+N CKSCKG   +K  ++++L I  G+D+N+ +K+
Sbjct: 174 RVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKM 233

Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG- 373
              G  +PD  Q GDLY+ I ++   +F+R G +++    +S TQA LG  I++ T+   
Sbjct: 234 RGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASK 293

Query: 374 DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433
            + +K+  GT+  +++++KN+G+   ++  FG+  +   +  P NL     +L+E  +KE
Sbjct: 294 KIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENLSKE 353

Length = 365

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score =  218 bits (557), Expect = 4e-67
 Identities = 124/356 (34%), Positives = 180/356 (50%), Gaps = 22/356 (6%)

Query: 90  DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRS 149
           DYY++LGV++ A+A EIK AY  LA K HPD NK+   A +KF ++++AY VL D EKR+
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRA 61

Query: 150 VYDQVGHEAFVHQETNGGPGHE--GGFGNPFQDIFNMENIF-----NFRDIFRNRMSGQD 202
            YD+ G          G PG +  GG G    DIF  E +F           R    G D
Sbjct: 62  HYDRFGT-----APGAGMPGGDPFGGMGFDPMDIF--EQLFGGAGFGGGRGRRGPARGDD 114

Query: 203 VKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEK-CRRCKGSGMESIHS- 260
           ++    ++  +A  G    V       CE C G    PG KP K C  C+G+G     + 
Sbjct: 115 LETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQAR 174

Query: 261 ---GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS 317
              G +   Q C  C G G IIT+ C  C+G      +++VK+ +  G+D    ++V   
Sbjct: 175 TIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGM 234

Query: 318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVL 377
           G   P GN  GDLYV I++   P  RRE  ++  ++ +   +A LGG I VPTL G  V+
Sbjct: 235 GNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVI 292

Query: 378 KVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE 433
           +V+PGTQ G    L+ +G+        GD  V + +++P  L+   RE +E +A+ 
Sbjct: 293 EVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEAYARA 348

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score =  215 bits (549), Expect = 4e-66
 Identities = 132/363 (36%), Positives = 182/363 (50%), Gaps = 31/363 (8%)

Query: 88  ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDE 146
           A+DYY +LGV++NA+  +IKKA+  LAKK HPD +  +  EAE+KF+E+S+AYEVL D +
Sbjct: 2   AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQ 61

Query: 147 KRSVYDQVGHEAFVHQETNGGPGHEGGFGN-----PFQDIFNMENIF--NFRDIF----- 194
           KR  YDQ G   F      G  G    + N        DIFN   IF  NF   F     
Sbjct: 62  KRRQYDQTGTVDF------GAGGSNFNWDNFTHFSDINDIFN--QIFGGNFGSDFFSGFG 113

Query: 195 ---RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCK 251
                R    D+   +++S  +A  G  K + ++    C  C G G   G K   C  C 
Sbjct: 114 NQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCH 172

Query: 252 GSGMESI--HSGF--MSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD 307
           G+G + I    GF  M    TCR CGG G I    C  C G   V  ++ + + I  G  
Sbjct: 173 GTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGAT 232

Query: 308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQ 367
           +N  L+V   G     G + GDLYV ++V  DP  +R   +++VD  ++  QA LGG I+
Sbjct: 233 DNLRLRV--KGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIE 290

Query: 368 VPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELI 427
           +        LK+  GTQPG+ + +K  G+   N    GD  V  NV +P  LT +Q+ELI
Sbjct: 291 IKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELI 350

Query: 428 EEF 430
            EF
Sbjct: 351 REF 353

Length = 365

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score =  214 bits (547), Expect = 1e-65
 Identities = 124/364 (34%), Positives = 185/364 (50%), Gaps = 27/364 (7%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M  +DYY+VLGV+K A+  EI++AY  LAK+ HPD NK  P+A  K  E+++A +VL D 
Sbjct: 1   MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDK 59

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIF-NM--ENIFNFRDIF-------- 194
           +KR  YDQ GH AF     +G  G    FG+ F+D+F NM      +F +IF        
Sbjct: 60  DKRKQYDQFGHAAF-----DGSSGFSSNFGD-FEDLFSNMGSSGFSSFTNIFSDFFGSNK 113

Query: 195 ---RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCK 251
              +    GQ V + + L+F E + G  K +       C  C G G         C  C 
Sbjct: 114 SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCH 173

Query: 252 GSGMESIHS--GFMSINQ--TCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD 307
           G+G   +    GF    Q   C  C G G II N CK+CKG       K ++++I  G+ 
Sbjct: 174 GTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIR 233

Query: 308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN-IHVDSVLSVTQAILGGTI 366
            N+ +K+ + G A  +    GDL + I ++E  VF     N I +   +S   AILG  I
Sbjct: 234 PNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEI 293

Query: 367 QVPTLTGDVVLKVRPGTQPGQKVVLKNKGI-KTRNSFSFGDQYVHFNVSIPTNLTQRQRE 425
            + TL GD+  K+       + +++ NKG+ K+ N    GD  +  N+ +P NL+++++E
Sbjct: 294 IIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKE 353

Query: 426 LIEE 429
           LIE+
Sbjct: 354 LIEQ 357

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score =  201 bits (512), Expect = 2e-60
 Identities = 123/345 (35%), Positives = 189/345 (54%), Gaps = 12/345 (3%)

Query: 91  YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
           YY++L V K++    IKK+Y  LA K HPD N  D EAE+KF+ +++AY VL D++KR++
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRAL 64

Query: 151 YDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFN-MENIFNF--RDIFRNRMS-GQDVKVA 206
           YD+ G +       N     +  F + F+D+ +  E+ F F  R   R + S   D    
Sbjct: 65  YDRYGKKGL-----NQAGASQSDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQT 119

Query: 207 VELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSIN 266
           +ELSF EAV GC KT+  Q +  CE+C G G       E C++C G G   +  GFMS  
Sbjct: 120 IELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKAL-ETCKQCNGQGQVFMRQGFMSFA 178

Query: 267 QTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQ 326
           QTC  C G G II   C++CKG   +   + +   I  G+D+   + V ++ G + +  +
Sbjct: 179 QTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRM-VLKNKGNEYEKGK 237

Query: 327 PGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQP 385
            GDLY+  +V+ED  F+REG ++ +++ +  T   LG TI+VP+L GD + LK+    + 
Sbjct: 238 RGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARD 297

Query: 386 GQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEF 430
            Q    +N+G+K   S   G   V   V  P +L + Q+EL+E+ 
Sbjct: 298 RQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKL 342

Length = 369

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score =  172 bits (438), Expect = 5e-52
 Identities = 57/130 (43%), Positives = 81/130 (62%)

Query: 290 RVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANI 349
             V+  K++ + I  GVD+ + L++   G A P+G  PGDLYV I+V+  PVFRR+G ++
Sbjct: 29  TRVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDL 88

Query: 350 HVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYV 409
           + +  +S+T+A+LGG I+VPTL G V LK+ PGTQPG  + LK KG+        GD YV
Sbjct: 89  YCEVPISLTEALLGGEIEVPTLGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYV 148

Query: 410 HFNVSIPTNL 419
              V  P  L
Sbjct: 149 EVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score =  165 bits (419), Expect = 2e-46
 Identities = 107/341 (31%), Positives = 164/341 (48%), Gaps = 30/341 (8%)

Query: 91  YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
            Y+VL ++K+ T SEIKKAY  LA K HPD    DPE   KF+E+S+AYEVL D EKR +
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG-GDPE---KFKEISRAYEVLSDPEKRKI 85

Query: 151 YDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELS 210
           YD+ G E     E    P           D+F++  IF        +  G+D+   ++++
Sbjct: 86  YDEYGEEGL---EGGEQPADA-------SDLFDL--IFGGGRKPGGKKRGEDIVSHLKVT 133

Query: 211 FMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSG----MESIHSGFMSIN 266
             +   G  + +    ++ C  C G G P       C+ C G G    +  + S      
Sbjct: 134 LEQIYNGAMRKLAINKDVICANCEGHGGPKDAF-VDCKLCNGQGIRVQIRQMGSMIHQTQ 192

Query: 267 QTCRQCGGTGHII--TNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDG 324
            TC  C G G II  +  CK+C G  V K  K ++++I  GV N    K+   G AD   
Sbjct: 193 STCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQH--KITFHGEADEKP 250

Query: 325 NQ-PGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVL-KVRPG 382
           N+ PG++   +  +    F+REG ++ +   +S+ +A+ G    +  L G  +L    PG
Sbjct: 251 NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPG 310

Query: 383 --TQPGQKVVLKNKGIKT-RNSFSFGDQYVHFNVSIPTNLT 420
              +PG   V+ N+G+ T ++ F  G+ YV F V  P +  
Sbjct: 311 EVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRK 351

Length = 421

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score =  159 bits (404), Expect = 1e-45
 Identities = 104/348 (29%), Positives = 157/348 (45%), Gaps = 64/348 (18%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M+ +DYY +LGV KNA+  EIKKA+  LA+K HPD NK  P AE+KF+E+++AY VL D 
Sbjct: 1   MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDP 59

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKV 205
           EKR +YD  G  A         PG  GG        F+  N+ +F D F+    G+    
Sbjct: 60  EKRRIYDTYGTTAASAGWQGPPPGPPGGGD------FSGFNVGDFSDFFQQLFGGRGGFG 113

Query: 206 AVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSI 265
                F    +   K    + ELP                         +E  + G    
Sbjct: 114 GFGDLFGSVGRRARKGRDLEAELPLT-----------------------LEEAYRG---- 146

Query: 266 NQTCRQCGGTGHIITNWCKSCKGARVVK-GSKSVKLDIMPGVDNNETLKVFRSGGADPDG 324
                                 G +VV+   + + + I PGV   + +++   G      
Sbjct: 147 ----------------------GEKVVEVAGERLSVRIPPGVREGQVIRLAGKGR----- 179

Query: 325 NQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQ 384
            Q GDLY+ +++   PVFR EG +++    +    A++GG ++V TL G V + + P TQ
Sbjct: 180 -QGGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQ 238

Query: 385 PGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAK 432
            G+K+ LK KG     +   GDQY    ++IPT  T  +  L ++ A+
Sbjct: 239 AGRKLRLKGKGWPRGPA-GRGDQYAEVRITIPTRPTPEEERLYKQLAE 285

Length = 291

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score =  121 bits (307), Expect = 3e-34
 Identities = 38/63 (60%), Positives = 50/63 (79%)

Query: 90  DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRS 149
           DYY++LGV ++A+  EIKKAY  LA K HPD N  DP AE+KF+E+++AYEVL D EKR+
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 150 VYD 152
           +YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score =  104 bits (263), Expect = 5e-28
 Identities = 36/55 (65%), Positives = 44/55 (80%)

Query: 90  DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144
           DYYD+LGV  +A+  EIKKAY  LA K HPD N DDPEAE+KF+E+++AYEVL D
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score =  103 bits (259), Expect = 2e-27
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEVLKDDEK 147
            DYY++LGV ++A+  EIKKAY  LA K HPD N  D  EAE+KF+E+++AYEVL D EK
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain

 Score = 98.0 bits (245), Expect = 3e-25
 Identities = 34/81 (41%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 348 NIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGI-KTRNSFSFG 405
           +++V   +S+ +A+LGGT++VPTL G  V +K+  GTQPG K+ +K KG+   +     G
Sbjct: 1   DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60

Query: 406 DQYVHFNVSIPTNLTQRQREL 426
           D  V  NV IP  L+  Q+EL
Sbjct: 61  DLIVTLNVKIPKKLSSEQKEL 81

This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 96.8 bits (241), Expect = 2e-22
 Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 31/197 (15%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           M  +DYY ++GV        IK AY  LA+K HPD +K+ P+AE +F+EV++A+EVL D+
Sbjct: 1   MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDE 59

Query: 146 EKRSVYDQVGHEAFVH----------QETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFR 195
           ++R+ YDQ+    + H          Q  +G   +   F + F  IF      + +   R
Sbjct: 60  QRRAEYDQL----WQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQ---R 112

Query: 196 NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPC-EACGGEG----------VPPGVKP 244
               G D+++ V +   E +    +T+++   LP   A G             +P GV  
Sbjct: 113 PAARGHDIEIEVAVFLEETLTEHKRTISYN--LPVYNAFGMIEQEIPKTLNVKIPAGVGN 170

Query: 245 EKCRRCKGSGMESIHSG 261
            +  R KG G    + G
Sbjct: 171 GQRIRLKGQGTPGENGG 187

Length = 306

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 91.4 bits (226), Expect = 5e-21
 Identities = 61/262 (23%), Positives = 98/262 (37%), Gaps = 41/262 (15%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEVLKDDEK 147
            DYY++LGV  NA+  EIKKAY  LA K HPD N  DP  AE+KF+E+++AYE+L D E+
Sbjct: 6   LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65

Query: 148 RSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAV 207
           R+ YD++G         N  PG        F  I     +    + +R + +  + K ++
Sbjct: 66  RAEYDKIG-------ADNYFPGKSYRESAAFP-IEGSLQLTGLYEEWRGKRNKTERKASL 117

Query: 208 ELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQ 267
                  + G              A         ++    RR   +          ++  
Sbjct: 118 ADLLSRGLSG-----------LAAALSLFADEAALRSGSLRRRDLA---------ANLAD 157

Query: 268 TCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQP 327
              +               K A      K++K  I  G    + L++     +       
Sbjct: 158 NFEEAL----------AGVKKAVARLLGKALKSTIKAGALEGKALRLKGLLKSARG--AL 205

Query: 328 GDLYVTIKVREDPVFRREGANI 349
           G   +    +  P F  EG + 
Sbjct: 206 GKARLKELSKRHPPFALEGDDK 227

Length = 237

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 91.4 bits (226), Expect = 1e-19
 Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 13/96 (13%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           RDYY+VLG++++A   EIKKA+  LAKK HPD NK  P+A   F E+++A +VL + +KR
Sbjct: 2   RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK-APDAASIFAEINEANDVLSNPKKR 60

Query: 149 SVYDQVGHEAFVHQETNGGPGHEGGFGNPFQ-DIFN 183
           + YD+ GH+         G   E  F   FQ D+FN
Sbjct: 61  ANYDKYGHD---------GVDREDDFD--FQADVFN 85

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 79.2 bits (196), Expect = 1e-18
 Identities = 28/63 (44%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 230 CEACGGEGVPPGVKPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHIITNWCKS 285
           C  C G G  PG KP+ C  C GSG          GF     TC  CGGTG II + C  
Sbjct: 1   CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60

Query: 286 CKG 288
           CKG
Sbjct: 61  CKG 63

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 3/151 (1%)

Query: 295 SKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSV 354
            K++ + I  GV N + +++   G    +G   GDL++ I +   P+F   G ++ +   
Sbjct: 157 PKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVP 216

Query: 355 LSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVS 414
           L+  +A LG  + VPTL   ++L + PG+Q GQ++ +K KG+ ++     GD Y    + 
Sbjct: 217 LAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK--QTGDLYAVLKIV 274

Query: 415 IPTNLTQRQRELIEEFAKEERGEYDKRAAAG 445
           +P    ++   L ++ A + +  +D R   G
Sbjct: 275 MPPKPDEKTAALWQQLA-DAQSSFDPRKDWG 304

Length = 306

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 68.6 bits (168), Expect = 8e-15
 Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 230 CEACGGEGVPPGVKPEKCRRCKGSGME----SIHSGFMSINQTCRQCGGTGHIITNWCKS 285
           C  C G G  PG KP+ C +C GSG          G   + QTC +CGGTG II + CK 
Sbjct: 1   CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60

Query: 286 CKGAR 290
           CKG  
Sbjct: 61  CKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 61.9 bits (150), Expect = 3e-10
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 64  WLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPD--- 120
           WL++  L SN+  L+           D Y++LG++++ +  +IKK Y  L+ K HPD   
Sbjct: 77  WLVISYLISNIRTLK----IEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAP 132

Query: 121 --TNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH 156
              N+   E E+K++ ++KAY +L D ++R  Y   G 
Sbjct: 133 PMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170

Length = 610

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 54.8 bits (131), Expect = 6e-08
 Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 1/67 (1%)

Query: 91  YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
           +YD+LGV  NA   EI + Y+ LA+  +P   +   E   KF+++++AY++L D +K+ +
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYP-PKRSGNEGFHKFKKINEAYQILGDIDKKKM 633

Query: 151 YDQVGHE 157
           Y++ G++
Sbjct: 634 YNKFGYD 640

Length = 1136

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 15/65 (23%)

Query: 90  DYYDVLGVNKNATASEIKKAYYGLAKKL----HPD--TNKDDPE-----AEKKFQEVSKA 138
           D Y VLGV+++    EIK+AY    +KL    HPD    K  P      A++K QE+  A
Sbjct: 201 DAYKVLGVSESDDDQEIKRAY----RKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAA 256

Query: 139 YEVLK 143
           YE++K
Sbjct: 257 YELIK 261

Length = 267

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 37/174 (21%), Positives = 68/174 (39%), Gaps = 8/174 (4%)

Query: 265 INQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDG 324
            N   ++   T H +    +S         ++++ L+I   + +   +     G     G
Sbjct: 671 FNNQIKEIKYTRHTVDGNTESTT-------NEAITLEIQLPITSQLNISAIFKGFGHDFG 723

Query: 325 NQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQ 384
           N  GDL V  KV     F+ +   +HV +++    A  GG I V        +++  G +
Sbjct: 724 NGCGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVFGPNKLFNVRIPGGIK 783

Query: 385 PGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEY 438
              +V+ K+ G+ T+  +  G   VH   S       R    +++F K    EY
Sbjct: 784 VNDQVIFKDLGL-TKTKYDKGSLIVHLYYSSVMKKNDRTNVQVQQFNKLALREY 836

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 14/108 (12%)

Query: 90  DYYDVLGVNK---NATASEIKKAYYGLAKKLHPD-----TNKDDPEAEKKFQEVSKAYEV 141
           D Y +LG++K    A   +I KA+     K HPD      NK   E    F+ + KA EV
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEF---FKLIQKAREV 100

Query: 142 LKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFN 189
           L D + R  YD    +A V       P     F   ++ +F  E  F+
Sbjct: 101 LGDRKLRLQYDSNDFDADVPPPRIYTPDE---FFEVWEPVFEREARFS 145

Length = 379

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 90  DYYDVLGVNK--NATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQ---EVSKAYEVLKD 144
           +Y+ +LG+ +  N     ++K Y+ +  K HPD  K   E E+      E++ AY  LKD
Sbjct: 3   NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD 62

Query: 145 DEKRSVY 151
             KR+ Y
Sbjct: 63  ALKRAEY 69

Length = 166

>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40

 Score = 39.3 bits (93), Expect = 0.001
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 169 GHEGGFGNPFQDIFNMENIFNFR----DIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTF 224
           G  G  G P  D+         R     +FR    G D+   V +S  EA+ G    V  
Sbjct: 57  GDAGPNGGPPGDL-----YVVIRVKPHPVFRRD--GNDLYCEVPISLTEALLGGEIEVP- 108

Query: 225 QTELPCEACGGE---GVPPGVKPEKCRRCKGSGMESIHSG 261
            T       GG+    +PPG +P    R KG GM  +  G
Sbjct: 109 -TL------GGKVKLKIPPGTQPGTVLRLKGKGMPRLRGG 141

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158

>gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 223 TFQTELPCEACGGEGVPPGVKPEKCRRCKGSG 254
            FQT+  C  CGG G    +  + C +CKG G
Sbjct: 37  FFQTQTTCPTCGGTGK---IIKDPCPKCKGKG 65

Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 83  TASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPD--TNKDDPE-----AEKKFQEV 135
              +   D   VLGV   A    IKKAY  L  + HPD    K          ++K QE+
Sbjct: 107 REQLDREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEI 166

Query: 136 SKAYEVLK 143
            +AYE +K
Sbjct: 167 QEAYEDIK 174

Length = 174

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 13/70 (18%)

Query: 106 IKKAYYGLAKKLHPDTNKDDPEAEKK-----FQEVSKAYEVLKDDEKRSVY--------D 152
           +K  Y  L +  HPD      EAE++       EV+ AY+ LKD   R+ Y        D
Sbjct: 20  LKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLD 79

Query: 153 QVGHEAFVHQ 162
                  +  
Sbjct: 80  HAKERQTLRD 89

Length = 174

>gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 223 TFQTELPCEACGGEGVPPGVKPEKCRRCKGSG 254
            FQ +  C  CGG G    +  + C+ CKG G
Sbjct: 37  VFQMQQTCPKCGGTGK---IIKDPCKVCKGKG 65

The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	448
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14286	372	chaperone protein DnaJ; Provisional	100.0
PRK14279	392	chaperone protein DnaJ; Provisional	100.0
PRK14285	365	chaperone protein DnaJ; Provisional	100.0
PRK14277	386	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	100.0
PRK14301	373	chaperone protein DnaJ; Provisional	100.0
PRK14284	391	chaperone protein DnaJ; Provisional	100.0
PRK14278	378	chaperone protein DnaJ; Provisional	100.0
PRK14294	366	chaperone protein DnaJ; Provisional	100.0
PRK14295	389	chaperone protein DnaJ; Provisional	100.0
PRK14280	376	chaperone protein DnaJ; Provisional	100.0
PRK14297	380	chaperone protein DnaJ; Provisional	100.0
PRK14281	397	chaperone protein DnaJ; Provisional	100.0
PRK10767	371	chaperone protein DnaJ; Provisional	100.0
PRK14276	380	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14300	372	chaperone protein DnaJ; Provisional	100.0
PRK14291	382	chaperone protein DnaJ; Provisional	100.0
PRK14283	378	chaperone protein DnaJ; Provisional	100.0
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	100.0
PRK14289	386	chaperone protein DnaJ; Provisional	100.0
PRK14290	365	chaperone protein DnaJ; Provisional	100.0
PRK14293	374	chaperone protein DnaJ; Provisional	100.0
PRK14292	371	chaperone protein DnaJ; Provisional	100.0
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	100.0
PRK14299	291	chaperone protein DnaJ; Provisional	100.0
PRK10266	306	curved DNA-binding protein CbpA; Provisional	100.0
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	100.0
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	100.0
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	100.0
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.88
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	99.86
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.8
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.77
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.75
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.73
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.73
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.72
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.71
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.7
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.69
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.68
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.63
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.61
PHA03102	153	Small T antigen; Reviewed	99.57
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.54
PRK05014	171	hscB co-chaperone HscB; Provisional	99.42
PRK14282	369	chaperone protein DnaJ; Provisional	99.42
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.41
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.4
PRK01356	166	hscB co-chaperone HscB; Provisional	99.39
PRK00294	173	hscB co-chaperone HscB; Provisional	99.37
PRK03578	176	hscB co-chaperone HscB; Provisional	99.37
PRK14290	365	chaperone protein DnaJ; Provisional	99.36
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	99.36
PRK14285	365	chaperone protein DnaJ; Provisional	99.34
PRK14294	366	chaperone protein DnaJ; Provisional	99.34
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.33
PRK14298	377	chaperone protein DnaJ; Provisional	99.33
PRK10767	371	chaperone protein DnaJ; Provisional	99.33
PTZ00100	116	DnaJ chaperone protein; Provisional	99.29
PRK14284	391	chaperone protein DnaJ; Provisional	99.27
PRK14300	372	chaperone protein DnaJ; Provisional	99.27
PRK14301	373	chaperone protein DnaJ; Provisional	99.26
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.26
PRK14287	371	chaperone protein DnaJ; Provisional	99.25
PRK14278	378	chaperone protein DnaJ; Provisional	99.23
PRK14286	372	chaperone protein DnaJ; Provisional	99.22
PRK14288	369	chaperone protein DnaJ; Provisional	99.22
PRK14280	376	chaperone protein DnaJ; Provisional	99.22
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.22
PRK14279	392	chaperone protein DnaJ; Provisional	99.21
PRK14293	374	chaperone protein DnaJ; Provisional	99.2
PRK14276	380	chaperone protein DnaJ; Provisional	99.2
PRK14281	397	chaperone protein DnaJ; Provisional	99.17
PRK14297	380	chaperone protein DnaJ; Provisional	99.17
PHA02624	647	large T antigen; Provisional	99.14
PRK14295	389	chaperone protein DnaJ; Provisional	99.13
PRK14277	386	chaperone protein DnaJ; Provisional	99.12
PRK14289	386	chaperone protein DnaJ; Provisional	99.12
PRK14283	378	chaperone protein DnaJ; Provisional	99.11
PRK14296	372	chaperone protein DnaJ; Provisional	99.1
PRK14292	371	chaperone protein DnaJ; Provisional	99.1
PRK14291	382	chaperone protein DnaJ; Provisional	99.1
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.05
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.92
PRK14299	291	chaperone protein DnaJ; Provisional	98.91
PRK01773	173	hscB co-chaperone HscB; Provisional	98.89
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.87
PLN03165	111	chaperone protein dnaJ-related; Provisional	98.74
PRK10266	306	curved DNA-binding protein CbpA; Provisional	98.73
PF01556	81	CTDII: DnaJ C terminal domain; InterPro: IPR002939	98.62
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.6
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.33
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.13
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	98.07
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.02
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.58
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	97.54
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.53
KOG2813	406	consensus Predicted molecular chaperone, contains	96.99
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	96.88
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.69
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.57
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.48
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.26
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	95.52
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.27
KOG0431	453	consensus Auxilin-like protein and related protein	94.69
KOG2813	406	consensus Predicted molecular chaperone, contains	94.38
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	91.41
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	89.52
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	89.34
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	84.84
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	80.9
smart00709	160	Zpr1 Duplicated domain in the epidermal growth fac	80.82
TIGR00310	192	ZPR1_znf ZPR1 zinc finger domain.	80.68

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-95  Score=721.35  Aligned_cols=339  Identities=45%  Similarity=0.800  Sum_probs=311.0

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccC
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN  165 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~  165 (448)
                      ++.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++|||||+||+||++||+||++++.+.+.+
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            35789999999999999999999999999999999999889999999999999999999999999999999998733222


Q ss_pred             CCCCCCCCCCCCcccccccccccchhhhcc----------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCC
Q 013163          166 GGPGHEGGFGNPFQDIFNMENIFNFRDIFR----------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGG  235 (448)
Q Consensus       166 ~~~~g~~gf~~~f~~~f~~~d~f~f~~~f~----------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~G  235 (448)
                      ++  ++++|+.+|+      |||  +++|+          .+.+|.|+.+.|+|||+|++.|++++|.+++...|+.|+|
T Consensus        81 g~--g~~~fgg~~~------DIF--~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G  150 (371)
T COG0484          81 GF--GFGGFGGDFG------DIF--EDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG  150 (371)
T ss_pred             CC--CcCCCCCCHH------HHH--HHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence            11  2233322232      344  44442          1347889999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCcCCCCCCceEEee--cceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeE
Q 013163          236 EGVPPGVKPEKCRRCKGSGMESIHS--GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       236 sG~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~  313 (448)
                      +|+++++.+.+|++|+|+|++....  |.++++++|++|+|+|++++++|.+|+|.+.+.+.++++|+||+|+.+|++|+
T Consensus       151 sGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir  230 (371)
T COG0484         151 SGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIR  230 (371)
T ss_pred             CCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEE
Confidence            9999999999999999999987666  99999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcC
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKN  393 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g  393 (448)
                      +.|+|++.+.|+++|||||+|.|++|+.|.|+|+|||++++|++.+|+||+++.||||||.+.|+||||||+|++++|+|
T Consensus       231 ~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~g  310 (371)
T COG0484         231 LSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRG  310 (371)
T ss_pred             EecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcC
Confidence            99999999988999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          394 KGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       394 ~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      +|||...+..+|||||+++|++|++||.+|+++|++|++..
T Consensus       311 kG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~  351 (371)
T COG0484         311 KGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL  351 (371)
T ss_pred             CCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            99998777778999999999999999999999999999865

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.3e-83  Score=651.72  Aligned_cols=342  Identities=35%  Similarity=0.630  Sum_probs=298.7

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      .+|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||+||+.||+||++++....  ++
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~--~~   79 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSS--GF   79 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCC--Cc
Confidence            479999999999999999999999999999999998 578999999999999999999999999999988765311  00


Q ss_pred             CCCCCCCCCCcccc----c-ccccccchhhhccc-------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCC
Q 013163          168 PGHEGGFGNPFQDI----F-NMENIFNFRDIFRN-------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGG  235 (448)
Q Consensus       168 ~~g~~gf~~~f~~~----f-~~~d~f~f~~~f~~-------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~G  235 (448)
                      +++.++|.+.|+.+    | +++|+|  +++|+.       ..+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~f~d~f--~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G  157 (372)
T PRK14296         80 SSNFGDFEDLFSNMGSSGFSSFTNIF--SDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFG  157 (372)
T ss_pred             CcCCCccccccccccccccccchhhh--hhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCC
Confidence            00111221112111    0 112444  555642       236789999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCcCCCCCCceEE--eecce--eeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCce
Q 013163          236 EGVPPGVKPEKCRRCKGSGMESI--HSGFM--SINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNET  311 (448)
Q Consensus       236 sG~~~~~~~~~C~~C~G~G~~~~--~~g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~  311 (448)
                      +|...+..+.+|+.|+|+|++..  +.|++  +++.+|+.|+|+|++++.+|+.|+|.+++.+.++++|.||||+++|++
T Consensus       158 ~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  237 (372)
T PRK14296        158 SGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQ  237 (372)
T ss_pred             CccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCE
Confidence            99999888999999999999864  34665  566799999999999999999999999999999999999999999999


Q ss_pred             eEEeccCCCCCCCCCCccEEEEEEEEeccccccc-CcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEE
Q 013163          312 LKVFRSGGADPDGNQPGDLYVTIKVREDPVFRRE-GANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVV  390 (448)
Q Consensus       312 i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~-G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~  390 (448)
                      |+|+|+|++.+.++.+|||+|+|+++||+.|+|+ |+|||++++|||.|||+|+++.|+||||++.|+||++++||++++
T Consensus       238 i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~r  317 (372)
T PRK14296        238 IKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELII  317 (372)
T ss_pred             EEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEE
Confidence            9999999998767889999999999999999995 899999999999999999999999999999999999999999999


Q ss_pred             EcCCCccCC-CCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          391 LKNKGIKTR-NSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       391 l~g~G~p~~-~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      |+|+|||.. +++.+|||||+|+|+||++||++|+++|++|++..
T Consensus       318 i~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~  362 (372)
T PRK14296        318 INNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT  362 (372)
T ss_pred             EcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999954 44568999999999999999999999999999764

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.2e-83  Score=650.10  Aligned_cols=335  Identities=35%  Similarity=0.645  Sum_probs=299.4

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||+||++++...  + +
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~--~-~   78 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQA--G-A   78 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccC--C-C
Confidence            479999999999999999999999999999999998788899999999999999999999999999998766421  1 1


Q ss_pred             CCCCCCCCCCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV  238 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~  238 (448)
                        +..+|.+.|++   +.++|  +++|+.         ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|.
T Consensus        79 --~~~~~~~~f~~---~~~~F--~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~  151 (369)
T PRK14288         79 --SQSDFSDFFED---LGSFF--EDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGA  151 (369)
T ss_pred             --Cccccccchhh---HHHHH--HhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCccc
Confidence              11123222221   11233  333321         236789999999999999999999999999999999999999


Q ss_pred             CCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccC
Q 013163          239 PPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSG  318 (448)
Q Consensus       239 ~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G  318 (448)
                      ..+ ...+|+.|+|+|++..+.|+++++++|+.|+|+|+++..+|+.|.|.+++.+.++++|.||||+++|++|+|.|+|
T Consensus       152 ~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G  230 (369)
T PRK14288        152 KDK-ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKG  230 (369)
T ss_pred             CCC-CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCc
Confidence            876 6789999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCcc
Q 013163          319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGIK  397 (448)
Q Consensus       319 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~p  397 (448)
                      ++.+. +.+|||+|+|++++|+.|+|+|+|||++++|||.|||+|+++.|+||||+ +.|+||++++||++++|+|+|||
T Consensus       231 ~~~~~-~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p  309 (369)
T PRK14288        231 NEYEK-GKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVK  309 (369)
T ss_pred             cCCCC-CCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCC
Confidence            99774 78999999999999999999999999999999999999999999999997 79999999999999999999999


Q ss_pred             CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          398 TRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       398 ~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      ..+...+|||||+|+|.||++||++|+++|++|++.+
T Consensus       310 ~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~  346 (369)
T PRK14288        310 HPESSYRGSLIVELQVIYPKSLNKEQQELLEKLHASF  346 (369)
T ss_pred             CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            7665568999999999999999999999999999763

>PRK14286 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.1e-82  Score=645.02  Aligned_cols=341  Identities=40%  Similarity=0.732  Sum_probs=304.1

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||++|+.||+||++++.... +++
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~-~~~   81 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGA-GGF   81 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcccc-CCC
Confidence            4799999999999999999999999999999999988889999999999999999999999999999988765321 111


Q ss_pred             CCCCCCCCCCccccc-ccccccchhhhccc-------------ccCCCccccccccchhhhhccceeeeeeeeeccCCCC
Q 013163          168 PGHEGGFGNPFQDIF-NMENIFNFRDIFRN-------------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEAC  233 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f-~~~d~f~f~~~f~~-------------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C  233 (448)
                        +.++|+ +|.++| .++|+|  +++|+.             ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|
T Consensus        82 --~~~~~~-~~~~~~~~~~d~f--~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C  156 (372)
T PRK14286         82 --GQGAYT-DFSDIFGDFGDIF--GDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDC  156 (372)
T ss_pred             --CCCCcc-cccccccchhhHH--HHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCC
Confidence              111111 121111 112344  444431             2367899999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeE
Q 013163          234 GGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       234 ~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~  313 (448)
                      +|+|...+..+.+|+.|+|+|++....|+++++++|+.|+|+|+++..+|..|+|.+++.+.++++|+||||+++|++|+
T Consensus       157 ~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~  236 (372)
T PRK14286        157 NGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLK  236 (372)
T ss_pred             cCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEE
Confidence            99999988888999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEc
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLK  392 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~  392 (448)
                      |+|+|++.+.+..+|||||+|+++||+.|+|+|+||++++.|+|.||++|+++.|+||||+ +.|+||+++++|++++|+
T Consensus       237 ~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~  316 (372)
T PRK14286        237 VSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLK  316 (372)
T ss_pred             ECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEEC
Confidence            9999999887778899999999999999999999999999999999999999999999997 789999999999999999


Q ss_pred             CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      |+|||..+.+.+|||||+|+|.||++||++|+++|++|++++
T Consensus       317 G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~  358 (372)
T PRK14286        317 GHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEEFARES  358 (372)
T ss_pred             CCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            999997665678999999999999999999999999999875

>PRK14279 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.3e-82  Score=646.98  Aligned_cols=345  Identities=38%  Similarity=0.695  Sum_probs=304.6

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccC-
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN-  165 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~-  165 (448)
                      +.+|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||+||+||+||+.||+||+++......+ 
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~   86 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR   86 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence            4589999999999999999999999999999999999888999999999999999999999999999997432111000 


Q ss_pred             C--CCCCCCCC-------CCCcccccc---------cccccchhhhccc---------ccCCCccccccccchhhhhccc
Q 013163          166 G--GPGHEGGF-------GNPFQDIFN---------MENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGC  218 (448)
Q Consensus       166 ~--~~~g~~gf-------~~~f~~~f~---------~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~  218 (448)
                      +  ++++.++|       +.+|+++|+         ++++|  +++|+.         ..+|.|+.+.|+|||+|+|+|+
T Consensus        87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f--~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~  164 (392)
T PRK14279         87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLF--GGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGV  164 (392)
T ss_pred             cccCCCCCCCccccccccCcChhhhhcccccccccchhhhh--hhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCe
Confidence            0  00000111       123444442         12344  555542         2367899999999999999999


Q ss_pred             eeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEE
Q 013163          219 TKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSV  298 (448)
Q Consensus       219 ~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l  298 (448)
                      ++++.+++.+.|+.|+|+|...+..+.+|+.|+|+|++....|+++++++|+.|+|+|+++..+|..|.|.+++.+.+++
T Consensus       165 ~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~  244 (392)
T PRK14279        165 TMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTI  244 (392)
T ss_pred             EEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeee
Confidence            99999999999999999999998889999999999999888899999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEE
Q 013163          299 KLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLK  378 (448)
Q Consensus       299 ~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~  378 (448)
                      +|.||||+++|++|+|+|+|++.+.+..+|||+|+|+++||+.|+|+|+||+++++|||.||++|+++.|+||||++.|+
T Consensus       245 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~  324 (392)
T PRK14279        245 NVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVK  324 (392)
T ss_pred             EEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEE
Confidence            99999999999999999999998877888999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          379 VRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       379 i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      ||+++++|++++|+|+|||.. .+.+|||||+|+|.||++||++|+++|++|++.+
T Consensus       325 Ip~g~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~~  379 (392)
T PRK14279        325 VPAGTADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEAE  379 (392)
T ss_pred             ECCCCCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999964 3568999999999999999999999999999864

>PRK14285 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-80  Score=632.07  Aligned_cols=343  Identities=38%  Similarity=0.717  Sum_probs=305.4

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      .+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||++|+.||+||++++....  ++
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~--~~   79 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGG--GF   79 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCC--Cc
Confidence            4699999999999999999999999999999999998889999999999999999999999999999988764311  10


Q ss_pred             CCCCCCCCCCccccc-ccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIF-NMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG  237 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f-~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG  237 (448)
                      ++..++| ++|++.| .++|+|  ++||+.         ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus        80 ~~~~~g~-~~~~~~~~~~~d~f--~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G  156 (365)
T PRK14285         80 EGFSGGF-SGFSDIFEDFGDIF--DSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKK  156 (365)
T ss_pred             cccCCCc-cccccccccHHHHH--HHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcc
Confidence            0000122 1122111 112444  555542         23678999999999999999999999999999999999999


Q ss_pred             CCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEecc
Q 013163          238 VPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS  317 (448)
Q Consensus       238 ~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~  317 (448)
                      ...+..+.+|+.|+|+|++...+|+++++.+|+.|+|.|+++..+|..|+|.+++.+.++++|.||||+++|++|+|+|+
T Consensus       157 ~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~  236 (365)
T PRK14285        157 SEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGK  236 (365)
T ss_pred             cCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeec
Confidence            99988899999999999998888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCc
Q 013163          318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGI  396 (448)
Q Consensus       318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~  396 (448)
                      |++.+.+..+|||+|+|++++|+.|+|+|+|||++++|||.|||+|+++.|+||||+ +.|.||+++++|++++|+|+||
T Consensus       237 G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~  316 (365)
T PRK14285        237 GSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGM  316 (365)
T ss_pred             cccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCc
Confidence            999887778999999999999999999999999999999999999999999999995 7899999999999999999999


Q ss_pred             cCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163          397 KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER  435 (448)
Q Consensus       397 p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~  435 (448)
                      |..+...+|||||+|+|.+|+.|+++|+++|++|+++..
T Consensus       317 p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~  355 (365)
T PRK14285        317 PILHTEKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK  355 (365)
T ss_pred             cCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            976655689999999999999999999999999988764

>PRK14277 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.1e-80  Score=636.91  Aligned_cols=344  Identities=41%  Similarity=0.743  Sum_probs=300.4

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.....+++
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~   83 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG   83 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence            47999999999999999999999999999999999988899999999999999999999999999999987753211111


Q ss_pred             CCCCCCC-----C---CCcccccccccccchhhhccc--------ccCCCccccccccchhhhhccceeeeeeeeeccCC
Q 013163          168 PGHEGGF-----G---NPFQDIFNMENIFNFRDIFRN--------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCE  231 (448)
Q Consensus       168 ~~g~~gf-----~---~~f~~~f~~~d~f~f~~~f~~--------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~  231 (448)
                      +.+.++|     .   ..|.++|.  ++|  +.+|+.        ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~d~f~--~~F--~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~  159 (386)
T PRK14277         84 GFGQGGFGGGGFDFDFGGFGDIFE--DIF--GDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCD  159 (386)
T ss_pred             CcCCCCccccCccccccchhHHHH--Hhh--cccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCC
Confidence            0000111     0   01111111  122  222321        23678999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCC
Q 013163          232 ACGGEGVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD  307 (448)
Q Consensus       232 ~C~GsG~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~  307 (448)
                      .|+|+|...+..+.+|+.|+|+|++...    +|++++..+|+.|+|+|++++.+|+.|+|.+++.+.++++|.||||++
T Consensus       160 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  239 (386)
T PRK14277        160 VCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGID  239 (386)
T ss_pred             CCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCcc
Confidence            9999999988889999999999987643    377788899999999999999999999999999999999999999999


Q ss_pred             CCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCc
Q 013163          308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQ  387 (448)
Q Consensus       308 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~  387 (448)
                      +|++|+|+|+|++.+.+..+|||+|+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|+
T Consensus       240 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~  319 (386)
T PRK14277        240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGT  319 (386)
T ss_pred             CCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCC
Confidence            99999999999987766788999999999999999999999999999999999999999999999998999999999999


Q ss_pred             EEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163          388 KVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER  435 (448)
Q Consensus       388 ~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~  435 (448)
                      +++|+|+|||..+.+.+|||||+|+|.||++||++|+++|++|++.+.
T Consensus       320 ~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~~  367 (386)
T PRK14277        320 KFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLREFEKLSG  367 (386)
T ss_pred             EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhcc
Confidence            999999999976656789999999999999999999999999997644

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.9e-80  Score=632.52  Aligned_cols=337  Identities=38%  Similarity=0.682  Sum_probs=298.7

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      .+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||++|+.||+||++++.....+++
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~   82 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED   82 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence            369999999999999999999999999999999997 4789999999999999999999999999999877643111000


Q ss_pred             CCCCCCCCCCcccccccccccchhhhcc--------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFR--------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVP  239 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~--------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~  239 (448)
                      +.++++|+ .|+      |+|  ++||+        .+.+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus        83 ~~~~~~~~-~~~------d~f--~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~  153 (377)
T PRK14298         83 IFRGADFG-GFG------DIF--EMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAK  153 (377)
T ss_pred             ccccCCcC-cch------hhh--HhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCccc
Confidence            00011121 122      233  34443        12468899999999999999999999999999999999999999


Q ss_pred             CCCccccCcCCCCCCceEEee----cceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEe
Q 013163          240 PGVKPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF  315 (448)
Q Consensus       240 ~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~  315 (448)
                      .+..+.+|+.|+|+|++....    |+++++.+|+.|+|+|+++..+|+.|+|.+++.+.++++|.||||+++|++|+|+
T Consensus       154 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~  233 (377)
T PRK14298        154 PGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLS  233 (377)
T ss_pred             CCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEe
Confidence            998899999999999986432    5678899999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCC
Q 013163          316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKG  395 (448)
Q Consensus       316 g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G  395 (448)
                      |+|++.+.++.+|||||+|+++||+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++|+|+|
T Consensus       234 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G  313 (377)
T PRK14298        234 GEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKG  313 (377)
T ss_pred             cccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCC
Confidence            99999877788999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             ccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          396 IKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       396 ~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      ||..+++.+|||||+|+|++|+.||++|+++|+++++.+
T Consensus       314 ~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~  352 (377)
T PRK14298        314 MPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREFDELS  352 (377)
T ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            997665578999999999999999999999999999764

>PRK14287 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-80  Score=632.11  Aligned_cols=335  Identities=41%  Similarity=0.738  Sum_probs=298.7

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||++|+.||+||++++.... + +
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~-~-~   79 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF-G-G   79 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc-C-C
Confidence            469999999999999999999999999999999998 478999999999999999999999999999988764311 1 1


Q ss_pred             CCCCCCCCCCcccccccccccchhhhcc---------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFR---------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV  238 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~---------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~  238 (448)
                       ++.++|+ .|+      |+|  ++||+         ...+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus        80 -~~~~~f~-~~~------d~f--~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~  149 (371)
T PRK14287         80 -GGAGDFG-GFS------DIF--DMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGA  149 (371)
T ss_pred             -CCCcccc-chH------HHH--HhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCccc
Confidence             1111221 122      222  33333         1236889999999999999999999999999999999999999


Q ss_pred             CCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEE
Q 013163          239 PPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV  314 (448)
Q Consensus       239 ~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~  314 (448)
                      ..+..+.+|+.|+|+|++...    +|+++++.+|+.|.|+|+++..+|..|.|.+++.+.++++|.||||+++|++|+|
T Consensus       150 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~  229 (371)
T PRK14287        150 KPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRV  229 (371)
T ss_pred             CCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEE
Confidence            988888999999999987643    3677888999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCC
Q 013163          315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNK  394 (448)
Q Consensus       315 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~  394 (448)
                      +|+|++.+.++.+|||+|+|+++||+.|+|+|+||++++.|||.||++|+++.|+||||++.|+||+++++|++++|+|+
T Consensus       230 ~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~  309 (371)
T PRK14287        230 SGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGK  309 (371)
T ss_pred             ccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCC
Confidence            99999987767899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163          395 GIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER  435 (448)
Q Consensus       395 G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~  435 (448)
                      |||..+.+.+|||||+|+|.+|++|+++|+++|++|++.+.
T Consensus       310 G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~~  350 (371)
T PRK14287        310 GVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREFAGMSG  350 (371)
T ss_pred             CccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence            99976555689999999999999999999999999997643

>PRK14301 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=3.3e-80  Score=630.38  Aligned_cols=339  Identities=42%  Similarity=0.747  Sum_probs=303.6

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      .+|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+||++++...  + +
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~--~-~   79 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGN--G-G   79 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccC--C-C
Confidence            579999999999999999999999999999999999888899999999999999999999999999998776421  1 1


Q ss_pred             CCCCCCCCCCcccccccccccchhhhcc----------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFR----------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG  237 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~----------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG  237 (448)
                      +++..++.++|+.   +.++|  +++|+          .+.+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus        80 ~~g~~~~~~~~~~---f~d~f--~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G  154 (373)
T PRK14301         80 FGGFSSAEDIFSH---FSDIF--GDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG  154 (373)
T ss_pred             CCCcccccccccc---hHHHH--HHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc
Confidence            1111111112211   12333  33333          123678999999999999999999999999999999999999


Q ss_pred             CCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEecc
Q 013163          238 VPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRS  317 (448)
Q Consensus       238 ~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~  317 (448)
                      ...+..+.+|+.|+|+|++..+.|+++++.+|+.|+|.|+++..+|+.|+|.+++.+.++++|+||||+++|++|+|+|+
T Consensus       155 ~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~  234 (373)
T PRK14301        155 AAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGE  234 (373)
T ss_pred             cCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEecc
Confidence            99888889999999999998888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCcc
Q 013163          318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIK  397 (448)
Q Consensus       318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p  397 (448)
                      |++.+.++.+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+||||++.|+||+++++|++++|+|+|||
T Consensus       235 G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p  314 (373)
T PRK14301        235 GEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLP  314 (373)
T ss_pred             ccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCC
Confidence            99988778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          398 TRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       398 ~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      ..+.+.+|||||+|+|.||+.||++|+++|++|++.+
T Consensus       315 ~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~  351 (373)
T PRK14301        315 YLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFEALE  351 (373)
T ss_pred             CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            8666678999999999999999999999999999774

>PRK14284 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.9e-80  Score=634.85  Aligned_cols=345  Identities=38%  Similarity=0.660  Sum_probs=303.0

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCCC
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGP  168 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~  168 (448)
                      .|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||++|+.||+||++++.....+.++
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            38999999999999999999999999999999999888999999999999999999999999999998775421110000


Q ss_pred             CCCCCCCC---Ccccccc----c-ccccchhhhccc-------------ccCCCccccccccchhhhhccceeeeeeeee
Q 013163          169 GHEGGFGN---PFQDIFN----M-ENIFNFRDIFRN-------------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTE  227 (448)
Q Consensus       169 ~g~~gf~~---~f~~~f~----~-~d~f~f~~~f~~-------------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~  227 (448)
                      ++.+++++   .|..+|+    . .|+|  +++|+.             ..+|.|+.+.|+|||+|+|+|+++++.+.+.
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f--~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~  158 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFF--EGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGY  158 (391)
T ss_pred             CCcCcccchhhhccccccccccccccch--hhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeee
Confidence            01011100   1111111    1 2343  444431             1357899999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCC
Q 013163          228 LPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD  307 (448)
Q Consensus       228 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~  307 (448)
                      +.|+.|+|+|..++..+.+|+.|+|+|.+..+.|+++++.+|++|+|+|+++..+|+.|.|.+++.+.++++|+||||++
T Consensus       159 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~  238 (391)
T PRK14284        159 KSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVD  238 (391)
T ss_pred             ccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCC
Confidence            99999999999998889999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCC--CcEEEEeCCCCCC
Q 013163          308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLT--GDVVLKVRPGTQP  385 (448)
Q Consensus       308 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tld--G~~~l~i~~g~~~  385 (448)
                      +|++|+|+|+|++.+.++.+|||||+|+++||+.|+|+|+||+++++|||.||++|++++|+|||  +.+.|+||+++++
T Consensus       239 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~  318 (391)
T PRK14284        239 SGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQS  318 (391)
T ss_pred             CCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCC
Confidence            99999999999999888899999999999999999999999999999999999999999999999  5688999999999


Q ss_pred             CcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163          386 GQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER  435 (448)
Q Consensus       386 g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~  435 (448)
                      |++++|+|+|||..+.+.+|||||+|+|.+|+.||++|+++|++|++.+.
T Consensus       319 g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~~  368 (391)
T PRK14284        319 GTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQFAATEK  368 (391)
T ss_pred             CeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            99999999999976555789999999999999999999999999997643

>PRK14278 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=4.6e-80  Score=630.34  Aligned_cols=335  Identities=36%  Similarity=0.660  Sum_probs=295.8

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      .+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+||+||++|+.||+||++.....  + .
T Consensus         2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~--~-~   77 (378)
T PRK14278          2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG--G-G   77 (378)
T ss_pred             CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc--C-C
Confidence            369999999999999999999999999999999998 58899999999999999999999999999997632111  0 0


Q ss_pred             CCCCCCCCCCcccccccccccchhhhccc----------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN----------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG  237 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~----------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG  237 (448)
                      +   ++|+.+|++   ++|+|  ++||+.          ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus        78 ~---~g~~~~f~~---~~d~f--~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G  149 (378)
T PRK14278         78 G---GGFGGGFGG---LGDVF--EAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKG  149 (378)
T ss_pred             C---CCCCcCcCc---hhHHH--HHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCcc
Confidence            0   111111211   11333  344431          23678999999999999999999999999999999999999


Q ss_pred             CCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeE
Q 013163          238 VPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       238 ~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~  313 (448)
                      ...+..+.+|+.|+|+|++...    .|+++++++|+.|+|+|+++..+|+.|+|.+++.+.++++|.||||+++|++|+
T Consensus       150 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~  229 (378)
T PRK14278        150 TAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIR  229 (378)
T ss_pred             CCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEE
Confidence            9998889999999999997643    366778899999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecC-CCcEEEEeCCCCCCCcEEEEc
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTL-TGDVVLKVRPGTQPGQKVVLK  392 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tl-dG~~~l~i~~g~~~g~~~~l~  392 (448)
                      |+|+|++.+.++.+|||+|+|+++||+.|+|+|+||+++++|||.||++|+++.|+|| +|.+.|+||+++++|++++|+
T Consensus       230 ~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~  309 (378)
T PRK14278        230 LAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLR  309 (378)
T ss_pred             EccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEEC
Confidence            9999999887788899999999999999999999999999999999999999999999 556899999999999999999


Q ss_pred             CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      |+|||..+.+.+|||||+|+|.||++||++|+++|++|+++.
T Consensus       310 g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~  351 (378)
T PRK14278        310 GRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLRELKALR  351 (378)
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhc
Confidence            999997655678999999999999999999999999999753

>PRK14294 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.9e-80  Score=627.80  Aligned_cols=340  Identities=42%  Similarity=0.740  Sum_probs=304.9

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      .+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.....   
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~---   79 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGF---   79 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCC---
Confidence            47999999999999999999999999999999999988899999999999999999999999999999987753111   


Q ss_pred             CCCCCCCCCCcccccccccccchhhhcc-----------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFR-----------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGE  236 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~-----------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~Gs  236 (448)
                       ++.++|.+.|++   ++|+|  +++|+           ...+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+
T Consensus        80 -~~~~~~~~~~~~---~~d~f--~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~  153 (366)
T PRK14294         80 -SGFSGFDDIFSS---FGDIF--EDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGS  153 (366)
T ss_pred             -CCcCccccchhh---hhhhH--HHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCc
Confidence             111122211211   12333  34443           12357899999999999999999999999999999999999


Q ss_pred             CCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEec
Q 013163          237 GVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFR  316 (448)
Q Consensus       237 G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g  316 (448)
                      |...+..+.+|+.|+|+|++....|+++++++|+.|+|+|+++..+|+.|.|.+++.+.++++|.||||+++|++|+|+|
T Consensus       154 G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g  233 (366)
T PRK14294        154 GCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRG  233 (366)
T ss_pred             cccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEcc
Confidence            99988888999999999999888899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCc
Q 013163          317 SGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGI  396 (448)
Q Consensus       317 ~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~  396 (448)
                      +|++.+.++.+|||+|+|+++||+.|+|+|+||++++.|||.|||+|+++.|+||||++.|+||+++++|++++|+|+||
T Consensus       234 ~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~  313 (366)
T PRK14294        234 EGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGI  313 (366)
T ss_pred             CccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCC
Confidence            99998777889999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             cCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhcC
Q 013163          397 KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERG  436 (448)
Q Consensus       397 p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~~  436 (448)
                      |..+.+.+|||||+|+|.+|++|+++|+++|++|++.+++
T Consensus       314 p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~~~  353 (366)
T PRK14294        314 PSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFARLESE  353 (366)
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhccc
Confidence            9765557899999999999999999999999999987553

>PRK14295 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.7e-80  Score=629.69  Aligned_cols=342  Identities=38%  Similarity=0.721  Sum_probs=302.2

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccc----ccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQ----VGHEAFVHQ  162 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~----~g~~~~~~~  162 (448)
                      +..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+    ||++++...
T Consensus         7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~   86 (389)
T PRK14295          7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG   86 (389)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence            4689999999999999999999999999999999998878899999999999999999999999999    998776521


Q ss_pred             ccCCCCCCCCCCCCCcccccc--------------cccccchhhhccc------ccCCCccccccccchhhhhccceeee
Q 013163          163 ETNGGPGHEGGFGNPFQDIFN--------------MENIFNFRDIFRN------RMSGQDVKVAVELSFMEAVQGCTKTV  222 (448)
Q Consensus       163 ~~~~~~~g~~gf~~~f~~~f~--------------~~d~f~f~~~f~~------~~~g~di~~~l~vsl~e~~~G~~k~i  222 (448)
                      ..+ +  ++++|.....++|+              +.++|  +++|+.      ..+|.|+.+.|+|||+|+|+|+++++
T Consensus        87 ~~~-~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f--~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i  161 (389)
T PRK14295         87 PGG-G--GGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVF--GGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPL  161 (389)
T ss_pred             CCC-C--CCCCCCcccccccccccccccccccccchhhhh--cccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEE
Confidence            100 0  00111100011111              11233  444431      23678999999999999999999999


Q ss_pred             eeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEe
Q 013163          223 TFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDI  302 (448)
Q Consensus       223 ~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~I  302 (448)
                      .+++.+.|+.|+|+|...+..+.+|+.|+|+|++....|.++++.+|+.|+|+|++++.+|..|.|.+++.+.++++|.|
T Consensus       162 ~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~I  241 (389)
T PRK14295        162 RLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRI  241 (389)
T ss_pred             EeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEe
Confidence            99999999999999999988899999999999998777888999999999999999999999999999999999999999


Q ss_pred             cCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCC-cEEEEeCC
Q 013163          303 MPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRP  381 (448)
Q Consensus       303 p~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG-~~~l~i~~  381 (448)
                      |||+++|++|+|+|+|++.+.+..+|||+|+|+++||+.|+|+|+||+++++|||.||++|++++|+|||| .+.|+||+
T Consensus       242 p~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~  321 (389)
T PRK14295        242 PAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPP  321 (389)
T ss_pred             CCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECC
Confidence            99999999999999999987778899999999999999999999999999999999999999999999999 58899999


Q ss_pred             CCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          382 GTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       382 g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      ++++|++++|+|+|||.. .+.+|||||+|+|.||++||++|+++|++|++..
T Consensus       322 g~~~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~  373 (389)
T PRK14295        322 GTPNGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALEAFREAT  373 (389)
T ss_pred             ccCCCcEEEECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999964 4468999999999999999999999999999864

>PRK14280 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.9e-80  Score=628.22  Aligned_cols=339  Identities=44%  Similarity=0.752  Sum_probs=299.2

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||.+|+.||+||++++.....+++
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~   81 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGG   81 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCC
Confidence            369999999999999999999999999999999998 4789999999999999999999999999999887653211100


Q ss_pred             CCCCCCCCCCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV  238 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~  238 (448)
                      . ++.+|+..    |+++|+|  ++||+.         ..+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus        82 ~-~~~~~~~~----~~~~d~f--~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~  154 (376)
T PRK14280         82 F-GGGDFGGG----FGFEDIF--SSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGA  154 (376)
T ss_pred             C-CCCCcccc----ccchhhH--HHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCccc
Confidence            0 00111100    1112444  455531         236789999999999999999999999999999999999999


Q ss_pred             CCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEE
Q 013163          239 PPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV  314 (448)
Q Consensus       239 ~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~  314 (448)
                      ..+..+.+|+.|+|+|++...    .|+++++.+|+.|+|+|+++..+|+.|+|.+++.+.++++|.||||+++|++|+|
T Consensus       155 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l  234 (376)
T PRK14280        155 KPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRV  234 (376)
T ss_pred             CCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEE
Confidence            988888999999999987643    3667888999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCC
Q 013163          315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNK  394 (448)
Q Consensus       315 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~  394 (448)
                      +|+|++.+.++.+|||+|+|+++||+.|+|+|+|||+++.|||.|||+|+++.|+||||++.|+||+++++|++++|+|+
T Consensus       235 ~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~  314 (376)
T PRK14280        235 SGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGK  314 (376)
T ss_pred             cccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCC
Confidence            99999988778899999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             CccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          395 GIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       395 G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      |||......+|||||+|+|.||++||++|+++|++|++.+
T Consensus       315 G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~  354 (376)
T PRK14280        315 GVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLREFAELS  354 (376)
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            9997655578999999999999999999999999999754

>PRK14297 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.4e-79  Score=627.98  Aligned_cols=343  Identities=38%  Similarity=0.723  Sum_probs=301.7

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.... +.+
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~-~~~   81 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAG-GFG   81 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccC-CCC
Confidence            3699999999999999999999999999999999998889999999999999999999999999999988765311 100


Q ss_pred             CCCCCCCCCCcccccccccccchhhhccc-----------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN-----------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGE  236 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~-----------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~Gs  236 (448)
                      +++.++|.  |+++.++.|+|  ++||+.           ..+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+
T Consensus        82 ~~~~~~~~--~~~~~~~~d~f--~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~  157 (380)
T PRK14297         82 SGGFGGFD--FSDMGGFGDIF--DSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGT  157 (380)
T ss_pred             CCCCCCcC--cccccchhHHH--HHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccc
Confidence            00111111  11100112333  444431           2367899999999999999999999999999999999999


Q ss_pred             CCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCcee
Q 013163          237 GVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL  312 (448)
Q Consensus       237 G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i  312 (448)
                      |..++....+|+.|+|+|++...    +|+++++.+|+.|+|+|+++..+|..|+|.+++.+.++++|.||||+++|++|
T Consensus       158 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I  237 (380)
T PRK14297        158 GAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVI  237 (380)
T ss_pred             cccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEE
Confidence            99998889999999999987643    36778899999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEc
Q 013163          313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLK  392 (448)
Q Consensus       313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~  392 (448)
                      +|.|+|++.+.+..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+++++|++++|+
T Consensus       238 ~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~  317 (380)
T PRK14297        238 PLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLK  317 (380)
T ss_pred             EEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEc
Confidence            99999998877778999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163          393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER  435 (448)
Q Consensus       393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~  435 (448)
                      |+|||..+++.+|||||+|+|.||++||++|+++|++|++.+.
T Consensus       318 g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~  360 (380)
T PRK14297        318 GKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTMFMEASG  360 (380)
T ss_pred             CCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            9999976656789999999999999999999999999998754

>PRK14281 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.7e-79  Score=629.87  Aligned_cols=345  Identities=38%  Similarity=0.711  Sum_probs=297.9

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||+||||+++|+.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++......++
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~   81 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG   81 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence            46999999999999999999999999999999999887889999999999999999999999999999987653211001


Q ss_pred             CCC--CC--CCCCCc---cccccccc------ccchhhhccc---------ccCCCccccccccchhhhhccceeeeeee
Q 013163          168 PGH--EG--GFGNPF---QDIFNMEN------IFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQ  225 (448)
Q Consensus       168 ~~g--~~--gf~~~f---~~~f~~~d------~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~  225 (448)
                      +++  ++  .+.+.|   ++||+...      .|.|..+|+.         ..+|.|+.+.|+|||+|+|+|+++++.++
T Consensus        82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~  161 (397)
T PRK14281         82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK  161 (397)
T ss_pred             CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence            000  01  111222   23332110      0111111211         12578999999999999999999999999


Q ss_pred             eeccCCCCCCCCCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEE
Q 013163          226 TELPCEACGGEGVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLD  301 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~  301 (448)
                      +.+.|+.|+|+|...+ .+.+|+.|+|+|++...    .|+++++.+|++|+|.|++++.+|+.|+|.+++.+.++++|.
T Consensus       162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~  240 (397)
T PRK14281        162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT  240 (397)
T ss_pred             eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence            9999999999999887 57899999999987643    366778899999999999999999999999999999999999


Q ss_pred             ecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCC
Q 013163          302 IMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRP  381 (448)
Q Consensus       302 Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~  381 (448)
                      ||||+++|++|+|+|+|++.+.++.+|||+|+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||++.|+||+
T Consensus       241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~  320 (397)
T PRK14281        241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPA  320 (397)
T ss_pred             cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCC
Confidence            99999999999999999998877889999999999999999999999999999999999999999999999998999999


Q ss_pred             CCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163          382 GTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE  433 (448)
Q Consensus       382 g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~  433 (448)
                      ++++|++++|+|+|||..+.+.+|||||+|+|.||++||++|+++|++|++.
T Consensus       321 g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~  372 (397)
T PRK14281        321 GTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKELKKS  372 (397)
T ss_pred             ccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999765567899999999999999999999999999975

>PRK10767 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.2e-79  Score=625.40  Aligned_cols=338  Identities=46%  Similarity=0.821  Sum_probs=303.1

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++.....+++
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~   82 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG   82 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence            47999999999999999999999999999999999877889999999999999999999999999999887653211101


Q ss_pred             CCCCCCCCCCcccccccccccchhhhccc--------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN--------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVP  239 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~--------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~  239 (448)
                      .++.++|++.|++      +|  +.+|+.        ..+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|+|..
T Consensus        83 ~~~~~~~~~~f~~------~f--~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~  154 (371)
T PRK10767         83 FGGGGGFGDIFGD------IF--GDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAK  154 (371)
T ss_pred             CCCccccccchhh------hh--hhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccC
Confidence            0011122222333      33  344431        2468899999999999999999999999999999999999999


Q ss_pred             CCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCC
Q 013163          240 PGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGG  319 (448)
Q Consensus       240 ~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~  319 (448)
                      .+....+|+.|+|+|++....|+++++.+|+.|+|+|+++..+|+.|.|.+++.+.+.++|.||||+++|++|+|+|+|+
T Consensus       155 ~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~  234 (371)
T PRK10767        155 PGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGE  234 (371)
T ss_pred             CCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCcc
Confidence            88888999999999999877899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccCC
Q 013163          320 ADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTR  399 (448)
Q Consensus       320 ~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~~  399 (448)
                      +.+.+..+|||+|+|+++||+.|+|+|+||++++.|||.|||+|+++.|+||||.+.|.||+++++|++++|+|+|||..
T Consensus       235 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~  314 (371)
T PRK10767        235 AGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSV  314 (371)
T ss_pred             CCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCC
Confidence            97766789999999999999999999999999999999999999999999999998999999999999999999999976


Q ss_pred             CCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163          400 NSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE  433 (448)
Q Consensus       400 ~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~  433 (448)
                      +++.+|||||+|+|.||++|+++|+++|+++++.
T Consensus       315 ~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~  348 (371)
T PRK10767        315 RSGARGDLYCQVVVETPVNLTKRQKELLEEFEES  348 (371)
T ss_pred             CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            6567899999999999999999999999999974

>PRK14276 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.4e-79  Score=625.89  Aligned_cols=340  Identities=40%  Similarity=0.697  Sum_probs=299.8

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      .+|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||++|+.||+||++++.....+ +
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~-~   80 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGG-G   80 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCC-C
Confidence            479999999999999999999999999999999998 47899999999999999999999999999999876531111 0


Q ss_pred             CCCCCCCC--CCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCC
Q 013163          168 PGHEGGFG--NPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGE  236 (448)
Q Consensus       168 ~~g~~gf~--~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~Gs  236 (448)
                      .++.++|+  ..|.+   +.|+|  ++||+.         ..+|.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|+
T Consensus        81 ~~~~~~~~~~~~~~~---~~d~f--~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~  155 (380)
T PRK14276         81 AGGFGGFDGSGGFGG---FEDIF--SSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGS  155 (380)
T ss_pred             CCCCCCccccccccc---hhhHH--HHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCc
Confidence            00111111  01111   12344  455541         2367899999999999999999999999999999999999


Q ss_pred             CCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCcee
Q 013163          237 GVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL  312 (448)
Q Consensus       237 G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i  312 (448)
                      |...+..+.+|+.|+|+|++...    .|+++.+.+|+.|+|+|++++.+|+.|+|.+++.+.++++|.||||+++|++|
T Consensus       156 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i  235 (380)
T PRK14276        156 GAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQI  235 (380)
T ss_pred             ccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEE
Confidence            99988888999999999998643    36778889999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEc
Q 013163          313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLK  392 (448)
Q Consensus       313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~  392 (448)
                      +|+|+|++.+.+..+|||+|+|+|+||+.|+|+|+||+++++|||.||++|+++.|+||||++.|+||+++++|++++|+
T Consensus       236 ~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~  315 (380)
T PRK14276        236 RLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLR  315 (380)
T ss_pred             EEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEEC
Confidence            99999999877678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      |+|||..+.+.+|||||+|+|.||++||++|+++|++|++.+
T Consensus       316 g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~~  357 (380)
T PRK14276        316 GKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKAFAKAS  357 (380)
T ss_pred             CCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999997655568999999999999999999999999999754

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.4e-79  Score=619.61  Aligned_cols=341  Identities=38%  Similarity=0.704  Sum_probs=300.7

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccccccccccccccCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNG  166 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~  166 (448)
                      .+|||+||||+++||.+|||+|||+||++||||+|+.+ ++|+++|++|++||++|+||++|+.||+||.+++.....+.
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~   82 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET   82 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence            47999999999999999999999999999999999864 67999999999999999999999999999987654211110


Q ss_pred             CCCCCCC-CCCCccc---ccccccccchhhhccc----------ccCCCccccccccchhhhhccceeeeeeeeeccCCC
Q 013163          167 GPGHEGG-FGNPFQD---IFNMENIFNFRDIFRN----------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEA  232 (448)
Q Consensus       167 ~~~g~~g-f~~~f~~---~f~~~d~f~f~~~f~~----------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~  232 (448)
                      +  ++++ |.+.|.+   +|+ +|+|  +++|+.          ..+|+|+.+.|+|||+|+|+|+++++.+++.+.|+.
T Consensus        83 ~--~~g~~~~~~~~~~~~~~~-~d~f--~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~  157 (369)
T PRK14282         83 E--SGGGFFEDIFKDFENIFN-RDIF--DIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPH  157 (369)
T ss_pred             C--CCCccccccccccccccc-chhh--hHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCC
Confidence            0  1112 2222222   221 2444  555542          236789999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCC
Q 013163          233 CGGEGVPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDN  308 (448)
Q Consensus       233 C~GsG~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~  308 (448)
                      |+|+|...+..+.+|+.|+|+|++...    +|+++++.+|+.|+|+|++++.+|..|+|.+++.+.++++|.||||+++
T Consensus       158 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~  237 (369)
T PRK14282        158 CGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVED  237 (369)
T ss_pred             CCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCC
Confidence            999999988888999999999988643    4778889999999999999999999999999999999999999999999


Q ss_pred             CceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCc
Q 013163          309 NETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQ  387 (448)
Q Consensus       309 G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~  387 (448)
                      |++|+|+|+|++.+.++.+|||+|+|+++||+.|+|+|+||+++++|||.||++|+++.|+|+||+ +.|+||+|+++|+
T Consensus       238 G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~  317 (369)
T PRK14282        238 GTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPET  317 (369)
T ss_pred             CCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCC
Confidence            999999999999887788999999999999999999999999999999999999999999999996 7899999999999


Q ss_pred             EEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163          388 KVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE  433 (448)
Q Consensus       388 ~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~  433 (448)
                      +++|+|+|||..+.+.+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus       318 ~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~  363 (369)
T PRK14282        318 VFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKELAKK  363 (369)
T ss_pred             EEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9999999999754456899999999999999999999999999875

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=1e-78  Score=624.75  Aligned_cols=331  Identities=31%  Similarity=0.610  Sum_probs=287.8

Q ss_pred             CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Q 013163           85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQET  164 (448)
Q Consensus        85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~  164 (448)
                      .+..+|||+||||+++||.+|||+|||+||++||||+|++    .++|++|++||++|+||++|+.||+||++++...  
T Consensus        24 ~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~--   97 (421)
T PTZ00037         24 EVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGG--   97 (421)
T ss_pred             cccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccC--
Confidence            3456899999999999999999999999999999999862    4799999999999999999999999998766421  


Q ss_pred             CCCCCCCCCCCCCcccccccccccchhhhcccccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCcc
Q 013163          165 NGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKP  244 (448)
Q Consensus       165 ~~~~~g~~gf~~~f~~~f~~~d~f~f~~~f~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~  244 (448)
                        +  ++..+.+.|+.||+.+     . .-....+|.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|...+ .+
T Consensus        98 --~--~~~d~~d~f~~~Fggg-----~-~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~  166 (421)
T PTZ00037         98 --E--QPADASDLFDLIFGGG-----R-KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AF  166 (421)
T ss_pred             --C--CCcchhhhHHHhhccc-----c-ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CC
Confidence              0  1111212233332210     0 0011346889999999999999999999999999999999999998655 57


Q ss_pred             ccCcCCCCCCceEE--eecce--eeeEecccCCceeEEEe--eeccccCCCeEEecceEEEEEecCCCCCCceeEEeccC
Q 013163          245 EKCRRCKGSGMESI--HSGFM--SINQTCRQCGGTGHIIT--NWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSG  318 (448)
Q Consensus       245 ~~C~~C~G~G~~~~--~~g~~--~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G  318 (448)
                      .+|+.|+|+|+++.  +.|++  +++.+|+.|+|+|+++.  .+|+.|+|.+++.+.++++|+||||+++|++|+|+|+|
T Consensus       167 ~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~G  246 (421)
T PTZ00037        167 VDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEA  246 (421)
T ss_pred             ccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEeccc
Confidence            89999999998653  44654  67789999999999986  89999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCC--CCCCcEEEEcCCC
Q 013163          319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPG--TQPGQKVVLKNKG  395 (448)
Q Consensus       319 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g--~~~g~~~~l~g~G  395 (448)
                      ++.++ +.||||+|+|+++||+.|+|+|+|||++++|||.|||+|+++.|+||||+ +.|+||||  ++||++++|+|+|
T Consensus       247 d~~~~-~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geG  325 (421)
T PTZ00037        247 DEKPN-EIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEG  325 (421)
T ss_pred             CCCCC-CCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCC
Confidence            99775 78999999999999999999999999999999999999999999999997 78999998  9999999999999


Q ss_pred             ccCCCC-CCCCcEEEEEEEECC--CCCCHHHHHHHHHHHHH
Q 013163          396 IKTRNS-FSFGDQYVHFNVSIP--TNLTQRQRELIEEFAKE  433 (448)
Q Consensus       396 ~p~~~~-~~~GDL~V~~~V~~P--~~ls~~q~~ll~~~~~~  433 (448)
                      ||..+. +.+|||||+|+|.||  ++||++|+++|++|++.
T Consensus       326 mP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~  366 (421)
T PTZ00037        326 MPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQ  366 (421)
T ss_pred             cccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccC
Confidence            997543 578999999999999  99999999999999864

>PRK14300 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.3e-78  Score=617.00  Aligned_cols=342  Identities=40%  Similarity=0.791  Sum_probs=300.8

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||++|+|+.+|+.||+||++++......++
T Consensus         2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~   80 (372)
T PRK14300          2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGG   80 (372)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCC
Confidence            369999999999999999999999999999999997 5778999999999999999999999999999887653210011


Q ss_pred             CCCCCCCCCCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV  238 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~  238 (448)
                      .++.++|+..|+++|  .++|  +++|+.         ..+|.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|+|.
T Consensus        81 ~g~~~~~~~~~~~~f--~~~f--~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~  156 (372)
T PRK14300         81 GGNHGGFHPDINDIF--GDFF--SDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGS  156 (372)
T ss_pred             CCCCCccccchhhhH--HHHH--HhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCccc
Confidence            111112211122222  1222  222321         136789999999999999999999999999999999999999


Q ss_pred             CCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccC
Q 013163          239 PPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSG  318 (448)
Q Consensus       239 ~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G  318 (448)
                      ..+..+.+|+.|+|+|++....|+++++.+|+.|+|.|+++..+|+.|+|.+++.+.+.++|.||||+++|++|+++|+|
T Consensus       157 ~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G  236 (372)
T PRK14300        157 EKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEG  236 (372)
T ss_pred             CCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccc
Confidence            98888999999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCC-cEEEEeCCCCCCCcEEEEcCCCcc
Q 013163          319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGIK  397 (448)
Q Consensus       319 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG-~~~l~i~~g~~~g~~~~l~g~G~p  397 (448)
                      ++.+.++.+|||+|+|+++||+.|+|+|+||++++.|+|.+|++|+++.|+|||| .+.|+||+|+++|++++|+|+|||
T Consensus       237 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p  316 (372)
T PRK14300        237 EAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMS  316 (372)
T ss_pred             cCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCC
Confidence            9987778899999999999999999999999999999999999999999999998 578999999999999999999999


Q ss_pred             CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          398 TRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       398 ~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      ..+...+|||||+|+|.||++||++|+++|++|+++.
T Consensus       317 ~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~~  353 (372)
T PRK14300        317 KMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEFKKES  353 (372)
T ss_pred             CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            7655578999999999999999999999999999754

>PRK14291 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=5.4e-78  Score=616.28  Aligned_cols=342  Identities=41%  Similarity=0.762  Sum_probs=299.1

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      .+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|+.||+||++++.......+
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~   80 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ   80 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence            4799999999999999999999999999999999985 789999999999999999999999999999987653211100


Q ss_pred             -CCCCC-----CCCCCcccccccccccchhhhccc-------------ccCCCccccccccchhhhhccceeeeeeeeec
Q 013163          168 -PGHEG-----GFGNPFQDIFNMENIFNFRDIFRN-------------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTEL  228 (448)
Q Consensus       168 -~~g~~-----gf~~~f~~~f~~~d~f~f~~~f~~-------------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~  228 (448)
                       ..+.+     .+++.|.+||+   +|+|+++|+.             ..+|.|+.+.|+|||+|+|+|+++++.+++.+
T Consensus        81 ~~~~~~~~~~~~~~d~f~~~f~---~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~  157 (382)
T PRK14291         81 GQEGFSDFGGGNIEDILEDVFD---IFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYV  157 (382)
T ss_pred             cccccccccCCCHHHHHHHHHH---hccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeec
Confidence             00001     11112333321   1222222321             22678999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCC
Q 013163          229 PCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDN  308 (448)
Q Consensus       229 ~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~  308 (448)
                      .|+.|+|+|...+....+|+.|+|+|++....|+++++.+|+.|+|+|. ++.+|..|+|.+++.+.++++|+||||+++
T Consensus       158 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~  236 (382)
T PRK14291        158 PCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDN  236 (382)
T ss_pred             cCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCC
Confidence            9999999999998889999999999998877788899999999999995 789999999999999999999999999999


Q ss_pred             CceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCc
Q 013163          309 NETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQ  387 (448)
Q Consensus       309 G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~  387 (448)
                      |++|+|+|+|+..+.++.+|||||+|+++||+.|+|+|+||++++.|||.||++|+++.|+|+||+ +.|+||+|+++|+
T Consensus       237 G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~  316 (382)
T PRK14291        237 GSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGD  316 (382)
T ss_pred             CCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCC
Confidence            999999999999887789999999999999999999999999999999999999999999999996 7899999999999


Q ss_pred             EEEEcCCCccCCCCCCCCcEEEEEEEECCC--CCC------HHHHHHHHHHHHHh
Q 013163          388 KVVLKNKGIKTRNSFSFGDQYVHFNVSIPT--NLT------QRQRELIEEFAKEE  434 (448)
Q Consensus       388 ~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~--~ls------~~q~~ll~~~~~~~  434 (448)
                      +++|+|+|||..+...+|||||+|+|.||+  .||      ++|+++|++|++..
T Consensus       317 ~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~  371 (382)
T PRK14291        317 KIRVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL  371 (382)
T ss_pred             EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence            999999999976655789999999999998  599      99999999998665

>PRK14283 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=8.3e-77  Score=607.11  Aligned_cols=343  Identities=39%  Similarity=0.676  Sum_probs=298.7

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|+.||+||++++......+.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~   82 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI   82 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence            5799999999999999999999999999999999984 789999999999999999999999999999876542110000


Q ss_pred             CCCCCCCCCCccccc-ccccccchhhh-ccc-----ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCC
Q 013163          168 PGHEGGFGNPFQDIF-NMENIFNFRDI-FRN-----RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPP  240 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f-~~~d~f~f~~~-f~~-----~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~  240 (448)
                      . ...++.+.|..++ +++++|  ..+ |++     +.+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|...
T Consensus        83 ~-~~~~~~~~~~~~~~~~~~~f--~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~  159 (378)
T PRK14283         83 F-NNINFEDIFQGFGFGIGNIF--DMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEP  159 (378)
T ss_pred             c-cccCccccccccccchhhhc--cccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCC
Confidence            0 0011111122221 112333  222 321     34688999999999999999999999999999999999999998


Q ss_pred             CCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEec
Q 013163          241 GVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFR  316 (448)
Q Consensus       241 ~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g  316 (448)
                      +....+|+.|+|+|++...    .|+++.+.+|++|+|.|+.+..+|..|+|.+++.+.+.++|.||||+++|++|+|+|
T Consensus       160 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g  239 (378)
T PRK14283        160 GSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSG  239 (378)
T ss_pred             CCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEec
Confidence            8889999999999998643    367788899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCc
Q 013163          317 SGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGI  396 (448)
Q Consensus       317 ~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~  396 (448)
                      +|++.+.++.+|||+|+|+|++|+.|+|+|+||++++.|||.+|++|+++.|+||||.+.|.||+++++|++++|+|+||
T Consensus       240 ~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~  319 (378)
T PRK14283        240 EGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGM  319 (378)
T ss_pred             cccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCC
Confidence            99998777789999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             cCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          397 KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       397 p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      |....+.+|||||+|+|+||++||++|+++|++|++..
T Consensus       320 p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~~  357 (378)
T PRK14283        320 PSLRWSGKGNLYVKVKVVVPKKLSPKQKELLREFASIS  357 (378)
T ss_pred             CCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhc
Confidence            97655578999999999999999999999999998653

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=100.00  E-value=1.3e-75  Score=594.64  Aligned_cols=337  Identities=45%  Similarity=0.788  Sum_probs=296.5

Q ss_pred             CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCCCC
Q 013163           90 DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPG  169 (448)
Q Consensus        90 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~~  169 (448)
                      |||++|||+++|+.+|||+|||+||++||||+|+ +++|+++|++|++||++|+|+.+|+.||+||++++.....+ .++
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~-~~~   78 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGG-GGG   78 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcC-CCC
Confidence            7999999999999999999999999999999998 57899999999999999999999999999998876532110 000


Q ss_pred             CCCCCC-CCcccccccccccchhhhccc-----------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163          170 HEGGFG-NPFQDIFNMENIFNFRDIFRN-----------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG  237 (448)
Q Consensus       170 g~~gf~-~~f~~~f~~~d~f~f~~~f~~-----------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG  237 (448)
                      +..++. +.|++   +.++|  +.+|+.           ..++.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus        79 ~~~~~~~~~~~~---~~~~f--~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G  153 (354)
T TIGR02349        79 GFNGFDIGFFGD---FGDIF--GDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTG  153 (354)
T ss_pred             CcCCccccCcCc---hhhhH--HHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCC
Confidence            001110 01211   12333  444431           23678999999999999999999999999999999999999


Q ss_pred             CCCCCccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeE
Q 013163          238 VPPGVKPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       238 ~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~  313 (448)
                      ...+....+|+.|+|+|.+...    +|+++++++|+.|+|+|++++.+|+.|.|.+++.+.+.++|.||||+++|++|+
T Consensus       154 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~  233 (354)
T TIGR02349       154 AKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLR  233 (354)
T ss_pred             CCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEE
Confidence            9988888999999999998744    356788899999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcC
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKN  393 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g  393 (448)
                      |+|+|++.+.+..+|||+|+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||.+.|.||+++++|++++|+|
T Consensus       234 ~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g  313 (354)
T TIGR02349       234 VSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKG  313 (354)
T ss_pred             EecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECC
Confidence            99999987777789999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163          394 KGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE  433 (448)
Q Consensus       394 ~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~  433 (448)
                      +|||..+.+.+|||||+|+|.||++|+++|+++|+++++.
T Consensus       314 ~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~  353 (354)
T TIGR02349       314 KGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAEA  353 (354)
T ss_pred             CCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            9999766557899999999999999999999999999864

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1.2e-75  Score=600.53  Aligned_cols=341  Identities=37%  Similarity=0.648  Sum_probs=299.4

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||.+|+.||+||++++......++
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~   83 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG   83 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence            57999999999999999999999999999999999988899999999999999999999999999999877642111111


Q ss_pred             CCC-CCCCCCCcccccccccccchhhhc---------------ccccCCCccccccccchhhhhccceeeeeeeeeccCC
Q 013163          168 PGH-EGGFGNPFQDIFNMENIFNFRDIF---------------RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCE  231 (448)
Q Consensus       168 ~~g-~~gf~~~f~~~f~~~d~f~f~~~f---------------~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~  231 (448)
                      .++ +.++.+.|.+ |  +++|  +.+|               ....+|.|+.+.|.|||+|+|+|+++++.+++.+.|+
T Consensus        84 ~~~~~~~~~~~f~~-f--~~~f--g~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~  158 (386)
T PRK14289         84 FSGEGMSMEDIFSM-F--GDIF--GGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCS  158 (386)
T ss_pred             CCCCCcChhhhhHH-h--hhhh--cccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccC
Confidence            100 0011122211 1  1111  1111               0123678999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccccCcCCCCCCceEEee----cceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCC
Q 013163          232 ACGGEGVPPGVKPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVD  307 (448)
Q Consensus       232 ~C~GsG~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~  307 (448)
                      .|+|+|........+|+.|+|+|.+....    |+++++.+|+.|+|+|+++..+|..|.|.+++.+.++++|.||||++
T Consensus       159 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~  238 (386)
T PRK14289        159 HCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVA  238 (386)
T ss_pred             CCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence            99999999888889999999999987543    77888999999999999999999999999999999999999999999


Q ss_pred             CCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCc
Q 013163          308 NNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQ  387 (448)
Q Consensus       308 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~  387 (448)
                      +|++|+|+|+|++.+.+..+|||+|+|++++|+.|+|+++||++++.|+|.+|++|+++.|+|+||++.|.||+++++|+
T Consensus       239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~  318 (386)
T PRK14289        239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGK  318 (386)
T ss_pred             CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCc
Confidence            99999999999998777889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163          388 KVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE  433 (448)
Q Consensus       388 ~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~  433 (448)
                      +++|+|+|||..+.+.+|||||+|+|.||++||++|+++|++|++.
T Consensus       319 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~  364 (386)
T PRK14289        319 VLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTLEKMENS  364 (386)
T ss_pred             EEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence            9999999999765557899999999999999999999999999986

>PRK14290 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.6e-75  Score=593.52  Aligned_cols=341  Identities=37%  Similarity=0.650  Sum_probs=291.9

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHhhhccccccccccccccccccccccCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNG  166 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~  166 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|++++ +|+++|++|++||++|+||.+|+.||+||+.++...+ ++
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~-~~   80 (365)
T PRK14290          2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGG-SN   80 (365)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCC-CC
Confidence            369999999999999999999999999999999998764 7999999999999999999999999999987764210 00


Q ss_pred             CC-CCCCCC---CCCcccccccccccchhhhccc-----c--cCCCccccccccchhhhhccceeeeeeeeeccCCCCCC
Q 013163          167 GP-GHEGGF---GNPFQDIFNMENIFNFRDIFRN-----R--MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGG  235 (448)
Q Consensus       167 ~~-~g~~gf---~~~f~~~f~~~d~f~f~~~f~~-----~--~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~G  235 (448)
                      ++ ++..+|   .+.|++||+..  |. .+.|+.     .  .++.|+.+.|+|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus        81 ~~~~~~~~~~~~~d~f~~~fg~~--~~-~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G  157 (365)
T PRK14290         81 FNWDNFTHFSDINDIFNQIFGGN--FG-SDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG  157 (365)
T ss_pred             ccccccccccchhHHHHHHhcCc--cc-cccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence            00 000011   12233333210  00 000100     1  13779999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCcCCCCCCceEEe--ecce--eeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCce
Q 013163          236 EGVPPGVKPEKCRRCKGSGMESIH--SGFM--SINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNET  311 (448)
Q Consensus       236 sG~~~~~~~~~C~~C~G~G~~~~~--~g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~  311 (448)
                      +|...+ ...+|+.|+|+|++...  +|++  +++.+|+.|+|.|++++.+|+.|+|.+++.+.++++|.||||+.+|++
T Consensus       158 ~g~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  236 (365)
T PRK14290        158 TGAKNG-KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLR  236 (365)
T ss_pred             ccCCCC-CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcE
Confidence            998876 57899999999987644  4665  346799999999999999999999999999999999999999999999


Q ss_pred             eEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEE
Q 013163          312 LKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVL  391 (448)
Q Consensus       312 i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l  391 (448)
                      |+|+|+|+.  .++.+|||+|+|++++|+.|+|+|+||++++.|||.||++|+++.|+|++|.+.|+||+++++|++++|
T Consensus       237 i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri  314 (365)
T PRK14290        237 LRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKI  314 (365)
T ss_pred             EEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEE
Confidence            999999985  367899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163          392 KNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER  435 (448)
Q Consensus       392 ~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~  435 (448)
                      +|+|||..+...+|||||+|+|.+|+.|+++|+++|++|++.++
T Consensus       315 ~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~  358 (365)
T PRK14290        315 KGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE  358 (365)
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            99999976555689999999999999999999999999987654

>PRK14293 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.5e-75  Score=595.41  Aligned_cols=351  Identities=38%  Similarity=0.666  Sum_probs=299.4

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ..|||+||||+++||.+|||+|||+||++||||+|+ ++.|+++|++|++||++|+||.+|+.||+||++++......++
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~   80 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPD   80 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCC
Confidence            469999999999999999999999999999999997 4779999999999999999999999999999876642100000


Q ss_pred             CCCCCCCCCCcccccccccccc---hhhhcccccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCcc
Q 013163          168 PGHEGGFGNPFQDIFNMENIFN---FRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKP  244 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~---f~~~f~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~  244 (448)
                      .++.++|.+.|++||+...-.+   +........++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+...
T Consensus        81 ~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~  160 (374)
T PRK14293         81 MGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGP  160 (374)
T ss_pred             cccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCC
Confidence            0000112223333332100000   0000001235779999999999999999999999999999999999999988888


Q ss_pred             ccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCC
Q 013163          245 EKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGA  320 (448)
Q Consensus       245 ~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~  320 (448)
                      .+|+.|+|+|++...    +|+++++.+|..|.|.|++++.+|+.|.|.+++.+.+.++|.||||+++|++|+|+|+|++
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~  240 (374)
T PRK14293        161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDA  240 (374)
T ss_pred             eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccC
Confidence            999999999987643    3678888999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccCCC
Q 013163          321 DPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRN  400 (448)
Q Consensus       321 ~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~~~  400 (448)
                      .+.+..+|||+|+|++++|+.|+|+|+||+++++|||.||++|+++.|+||||++.|+||+++++|++++|+|+|||..+
T Consensus       241 ~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~  320 (374)
T PRK14293        241 GLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLG  320 (374)
T ss_pred             CCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCC
Confidence            77667789999999999999999999999999999999999999999999999988999999999999999999999754


Q ss_pred             C-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhcCCCC
Q 013163          401 S-FSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYD  439 (448)
Q Consensus       401 ~-~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~~~~~  439 (448)
                      . ..+|||||+|+|+||++|+++|+++|++|++.+++...
T Consensus       321 ~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~~~~~~  360 (374)
T PRK14293        321 NPVARGDHLITVKVKIPTRISDEERELLEKLAKIKGERQG  360 (374)
T ss_pred             CCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhccccCC
Confidence            4 36899999999999999999999999999988655544

>PRK14292 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.8e-73  Score=580.46  Aligned_cols=332  Identities=36%  Similarity=0.676  Sum_probs=290.7

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCCC
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGP  168 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~~  168 (448)
                      .|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||.+|+.||+||+++....  +++ 
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~--~~~-   77 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGM--PGG-   77 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccc--cCC-
Confidence            48999999999999999999999999999999997 57899999999999999999999999999998753210  000 


Q ss_pred             CCCCCCCCCcccccccccccchhhhcc-----------cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCC
Q 013163          169 GHEGGFGNPFQDIFNMENIFNFRDIFR-----------NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEG  237 (448)
Q Consensus       169 ~g~~gf~~~f~~~f~~~d~f~f~~~f~-----------~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG  237 (448)
                      ++.++++  |    +..++|  +.+|+           ...+|.|+.+.+.|||+|+|+|+++++.+++...|+.|+|+|
T Consensus        78 ~~~~~~~--~----d~~d~f--~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G  149 (371)
T PRK14292         78 DPFGGMG--F----DPMDIF--EQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSR  149 (371)
T ss_pred             cccCccC--C----ChHHHH--HHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccc
Confidence            0001111  1    111222  22322           124678999999999999999999999999999999999999


Q ss_pred             CCCCC-ccccCcCCCCCCceEEe----ecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCcee
Q 013163          238 VPPGV-KPEKCRRCKGSGMESIH----SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL  312 (448)
Q Consensus       238 ~~~~~-~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i  312 (448)
                      ..... ...+|+.|+|+|++..+    .|+++++.+|..|+|.|+.+..+|+.|.|.+++.+.+.++|.||||+++|++|
T Consensus       150 ~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i  229 (371)
T PRK14292        150 TEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRI  229 (371)
T ss_pred             cCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEE
Confidence            87664 37899999999987643    37788889999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEc
Q 013163          313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLK  392 (448)
Q Consensus       313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~  392 (448)
                      +|+|+|++.+.+.  |||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+||||++.|+||+|+++|++++|+
T Consensus       230 ~~~G~G~~~~~~~--GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~  307 (371)
T PRK14292        230 RVAGMGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLR  307 (371)
T ss_pred             EEecCcCCCCCCC--CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEEC
Confidence            9999999976543  99999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             CCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          393 NKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       393 g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      |+|||..+...+|||||+|+|.||+.||++|+++|++|++.+
T Consensus       308 g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~  349 (371)
T PRK14292        308 GQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEAYARAV  349 (371)
T ss_pred             CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999997655568999999999999999999999999999754

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-69  Score=529.02  Aligned_cols=325  Identities=35%  Similarity=0.659  Sum_probs=288.6

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGG  167 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~~  167 (448)
                      ...||+||||+++||++|||+|||+||++||||||++   |.++|++|++|||||+||++|+.||+||++++...+.   
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~---   76 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGG---   76 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCC---
Confidence            4579999999999999999999999999999999975   8899999999999999999999999999998843211   


Q ss_pred             CCCCCCCCCCcccccccccccchhhhcccccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccC
Q 013163          168 PGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKC  247 (448)
Q Consensus       168 ~~g~~gf~~~f~~~f~~~d~f~f~~~f~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C  247 (448)
                         ++|++. |++||+++     .....+..+|.|+.+.++|+|+|+|.|.++++.++++.+|+.|+|+|...+..+ +|
T Consensus        77 ---~~g~~~-f~~~F~~g-----~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~C  146 (337)
T KOG0712|consen   77 ---GGGFGG-FSQFFGFG-----GNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-KC  146 (337)
T ss_pred             ---CCCCcc-HHHhccCC-----CcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-CC
Confidence               123322 77777521     111223445999999999999999999999999999999999999999887654 89


Q ss_pred             cCCCCCCceE--Eeecc-e--eeeEecccCCceeEEE--eeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCC
Q 013163          248 RRCKGSGMES--IHSGF-M--SINQTCRQCGGTGHII--TNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGA  320 (448)
Q Consensus       248 ~~C~G~G~~~--~~~g~-~--~~~~~C~~C~G~G~~~--~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~  320 (448)
                      +.|.|+|..+  .++|+ +  +++..|..|+|+|.++  ++.|+.|.|.+++.+.+.++|.|++|+.++++|++.|++++
T Consensus       147 ~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geade  226 (337)
T KOG0712|consen  147 TTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADE  226 (337)
T ss_pred             CCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeee
Confidence            9999999975  45666 2  6788999999999984  68999999999999999999999999999999999999998


Q ss_pred             CCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCC--CCCCcEEEEcCCCcc
Q 013163          321 DPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPG--TQPGQKVVLKNKGIK  397 (448)
Q Consensus       321 ~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g--~~~g~~~~l~g~G~p  397 (448)
                      .+. ..+||+++.|..++|+.|.|+|+||++...|++.||++|+.+.+.||||+ +.+.++||  ++||++++|+|+|||
T Consensus       227 a~g-~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp  305 (337)
T KOG0712|consen  227 APG-TKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMP  305 (337)
T ss_pred             cCC-CcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcc
Confidence            875 55999999999999999999999999999999999999999999999996 68899998  899999999999999


Q ss_pred             CCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 013163          398 TRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFA  431 (448)
Q Consensus       398 ~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~  431 (448)
                      ..+.+ +|||||+|.|+||+ +++++...|+.++
T Consensus       306 ~~~~~-~g~lyi~~~v~fp~-~~~~~~~~l~~~l  337 (337)
T KOG0712|consen  306 IFRNP-KGDLYIKFEVKFPK-LSPSQLKMLEDLL  337 (337)
T ss_pred             cccCC-CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence            86655 99999999999999 9999999998864

>PRK14299 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=1e-59  Score=465.32  Aligned_cols=262  Identities=37%  Similarity=0.640  Sum_probs=221.3

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccCC
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNG  166 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~  166 (448)
                      +..|||+||||+++||.+|||+|||+||++||||+|+ +++++++|++|++||++|+||++|+.||+||+++......+.
T Consensus         2 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~   80 (291)
T PRK14299          2 AYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGP   80 (291)
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCC
Confidence            3579999999999999999999999999999999997 578999999999999999999999999999987543210010


Q ss_pred             --CCCCCCCCC----CCcccccccccccchhhhcc-----------------cccCCCccccccccchhhhhccceeeee
Q 013163          167 --GPGHEGGFG----NPFQDIFNMENIFNFRDIFR-----------------NRMSGQDVKVAVELSFMEAVQGCTKTVT  223 (448)
Q Consensus       167 --~~~g~~gf~----~~f~~~f~~~d~f~f~~~f~-----------------~~~~g~di~~~l~vsl~e~~~G~~k~i~  223 (448)
                        +.++.++|.    ++|+      ++|  +++|+                 ...+|.|+.+.+.|||+|++.|+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~------d~f--~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~  152 (291)
T PRK14299         81 PPGPPGGGDFSGFNVGDFS------DFF--QQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVE  152 (291)
T ss_pred             CCCCCCCCCccccCcCCHH------HHH--HHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEe
Confidence              000111111    1122      222  22222                 1235789999999999999999998775


Q ss_pred             eeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEec
Q 013163          224 FQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIM  303 (448)
Q Consensus       224 ~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip  303 (448)
                      +.                                                                     .++++|+||
T Consensus       153 l~---------------------------------------------------------------------g~~~~V~Ip  163 (291)
T PRK14299        153 VA---------------------------------------------------------------------GERLSVRIP  163 (291)
T ss_pred             eC---------------------------------------------------------------------CEEEEEecC
Confidence            31                                                                     256889999


Q ss_pred             CCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCC
Q 013163          304 PGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGT  383 (448)
Q Consensus       304 ~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~  383 (448)
                      ||+++|++|+++|+|++.      |||+|+|++++|+.|+|+|+||+++++||+.||++|+++.|+||||.+.|+||+++
T Consensus       164 ~G~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~  237 (291)
T PRK14299        164 PGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRT  237 (291)
T ss_pred             CCcCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCc
Confidence            999999999999999853      99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHH
Q 013163          384 QPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKE  433 (448)
Q Consensus       384 ~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~  433 (448)
                      ++|++++|+|+|||.. .+.+|||||+|+|.+|++|+++|+++|++|++.
T Consensus       238 ~~g~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~  286 (291)
T PRK14299        238 QAGRKLRLKGKGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLYKQLAEL  286 (291)
T ss_pred             CCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            9999999999999963 356899999999999999999999999999865

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=100.00  E-value=9.8e-58  Score=454.48  Aligned_cols=277  Identities=30%  Similarity=0.600  Sum_probs=230.2

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccc----cccccc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEA----FVHQET  164 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~----~~~~~~  164 (448)
                      .|||++|||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||++|+||.+|+.||+||...    +...  
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~--   80 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQ--   80 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccc--
Confidence            69999999999999999999999999999999987 4689999999999999999999999999998542    2111  


Q ss_pred             CCCCCCCCCCC-CCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCC
Q 013163          165 NGGPGHEGGFG-NPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACG  234 (448)
Q Consensus       165 ~~~~~g~~gf~-~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~  234 (448)
                      . +.+++..++ .+|.      ++|  +.+|+.         ..+|.|+.+.+.|+|+|+++|+.+++.+++.+    |.
T Consensus        81 ~-~~~~~~~~~~~~~~------~~f--~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~~  147 (306)
T PRK10266         81 F-QHGDGQSFNAEDFD------DIF--SSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----YN  147 (306)
T ss_pred             c-ccCCCCCCCCCCHH------HHH--HHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----cc
Confidence            0 000000110 1222      222  333331         23578999999999999999999999886532    21


Q ss_pred             CCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEE
Q 013163          235 GEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKV  314 (448)
Q Consensus       235 GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~  314 (448)
                                       |.|...                                  ....++++|.||||+++|++|++
T Consensus       148 -----------------g~G~~~----------------------------------~~~~~~~~V~Ip~G~~~G~~i~~  176 (306)
T PRK10266        148 -----------------AFGMIE----------------------------------QEIPKTLNVKIPAGVGNGQRIRL  176 (306)
T ss_pred             -----------------CCCeEE----------------------------------EeeeEEEEEEECCCCcCCcEEEE
Confidence                             222110                                  01236899999999999999999


Q ss_pred             eccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCC
Q 013163          315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNK  394 (448)
Q Consensus       315 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~  394 (448)
                      +|+|++.+.+..+|||+|+|+++||+.|+|+|+||+++++||+.+|++|+++.|+|+||.+.|+||+++++|++++|+|+
T Consensus       177 ~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~  256 (306)
T PRK10266        177 KGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGK  256 (306)
T ss_pred             ecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCC
Confidence            99999987778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 013163          395 GIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       395 G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~  434 (448)
                      |||..+  .+|||||+|+|.+|++||++|+++|++|++..
T Consensus       257 G~p~~~--~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~  294 (306)
T PRK10266        257 GLVSKK--QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQ  294 (306)
T ss_pred             CCCCCC--CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            999643  58999999999999999999999999999863

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-44  Score=348.88  Aligned_cols=309  Identities=30%  Similarity=0.492  Sum_probs=241.0

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccC
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN  165 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~  165 (448)
                      ...+|||+||||+++|+..|||+||||||++||||+|++||.|.++|++|+.|||||+||++|+.||+||++++......
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~   92 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD   92 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999998864311


Q ss_pred             CCCCCCCCCCCCccccccccccc-chhhhc-c-cccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCC
Q 013163          166 GGPGHEGGFGNPFQDIFNMENIF-NFRDIF-R-NRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGV  242 (448)
Q Consensus       166 ~~~~g~~gf~~~f~~~f~~~d~f-~f~~~f-~-~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~  242 (448)
                       +.++.+| .++|+.+|+  ++. .++... . ....|.++...++.++++.|.+........+.+.|.. .      ++
T Consensus        93 -~~~g~~~-~~~f~~~f~--dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~------g~  161 (336)
T KOG0713|consen   93 -GEGGGGG-NDIFSAFFG--DFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-P------GT  161 (336)
T ss_pred             -cccCCcc-cchHHHhhc--ccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-C------cc
Confidence             1111122 256666554  111 001111 1 1356788899999999999998876666555554431 1      11


Q ss_pred             ccccCcCCCCCCceEEeecceeeeEecccCCceeEEE-eeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCC
Q 013163          243 KPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHII-TNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGAD  321 (448)
Q Consensus       243 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~  321 (448)
                      ....|+.     .          ..++..|.|....+ ...|..|.+.+...+....++.+..|...|....+..+|.+.
T Consensus       162 ~~~~~~~-----~----------~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h  226 (336)
T KOG0713|consen  162 RKCNCRL-----E----------MFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPH  226 (336)
T ss_pred             cccCChh-----h----------heeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCcc
Confidence            1112211     1          11222333333333 246777777888899999999999999999999999999887


Q ss_pred             CCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCccC-C
Q 013163          322 PDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGIKT-R  399 (448)
Q Consensus       322 ~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~p~-~  399 (448)
                      .. +.+||+++.+...+|+.|.|.++++++.+.|++.+++.|+...+.++|+. +.++-..++.|+..++.+++|||. .
T Consensus       227 ~~-~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~  305 (336)
T KOG0713|consen  227 ID-GVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLK  305 (336)
T ss_pred             ee-cccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhh
Confidence            65 78999999999999999999999999999999999999999999999996 456667778999999999999995 4


Q ss_pred             CCCCCCcEEEEEEEECCCC-CCH
Q 013163          400 NSFSFGDQYVHFNVSIPTN-LTQ  421 (448)
Q Consensus       400 ~~~~~GDL~V~~~V~~P~~-ls~  421 (448)
                      .....|++|++|.+.+|.+ +|+
T Consensus       306 ~~~~~~~~~~t~~~~~~~~~~~~  328 (336)
T KOG0713|consen  306 NRNEKGNLYVTFDVEFPKSSLSD  328 (336)
T ss_pred             ccchhcceeEEecccCcccccch
Confidence            4457899999999999954 665

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-42  Score=336.97  Aligned_cols=252  Identities=43%  Similarity=0.759  Sum_probs=214.6

Q ss_pred             ccccCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccc
Q 013163           78 RSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHE  157 (448)
Q Consensus        78 ~~~~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  157 (448)
                      +.++.+..+...|||+||||+++|+..|||+||++||++||||.|.+ ++|+++|++|.+|||+|+|+++|+.||.+|..
T Consensus        32 r~~~~s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~  110 (288)
T KOG0715|consen   32 RKFHASRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE  110 (288)
T ss_pred             ceeeecccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence            44444544555699999999999999999999999999999999986 59999999999999999999999999999976


Q ss_pred             cccccccCCCCCCCCCCCCCcccccccccccchhhhccc----ccCCCccccccccchhhhhccceeeeeeeeeccCCCC
Q 013163          158 AFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRN----RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEAC  233 (448)
Q Consensus       158 ~~~~~~~~~~~~g~~gf~~~f~~~f~~~d~f~f~~~f~~----~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C  233 (448)
                      +.     +    +.+|  +|++       +|  ..+|+.    ...+.++.+.+.++|+++..|+.+.+.+.....|.+|
T Consensus       111 ~~-----~----~~~g--~~~~-------~~--~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~  170 (288)
T KOG0715|consen  111 QH-----G----EFGG--NPFD-------VF--LEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETC  170 (288)
T ss_pred             cc-----c----cccC--Cccc-------hH--HHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccc
Confidence            51     1    0111  2321       11  222222    2345678888999999999999999999999999999


Q ss_pred             CCCCCCCCCccccCcCCCCCCceE-EeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCcee
Q 013163          234 GGEGVPPGVKPEKCRRCKGSGMES-IHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETL  312 (448)
Q Consensus       234 ~GsG~~~~~~~~~C~~C~G~G~~~-~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i  312 (448)
                      .|.|..++.....|..|.|.|... ..+.++... +|..|.|.|.+....|..|.|.+.+...+.+.|.+|+|+.++.+|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l  249 (288)
T KOG0715|consen  171 FGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTL  249 (288)
T ss_pred             cCcCcccccccccchhhhCcccccccccCCccee-ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEE
Confidence            999999999999999999999654 345555555 999999999999988999999999999999999999999999999


Q ss_pred             EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHH
Q 013163          313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQ  359 (448)
Q Consensus       313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~e  359 (448)
                      ++.+.|..        ||+|+|.|.+++.|+|+|.|+++++.|+++|
T Consensus       250 ~~~~~~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~  288 (288)
T KOG0715|consen  250 RFAGHGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ  288 (288)
T ss_pred             EEecCCcc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence            99987753        9999999999999999999999999999764

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=100.00  E-value=4.2e-39  Score=338.68  Aligned_cols=171  Identities=17%  Similarity=0.213  Sum_probs=140.9

Q ss_pred             ccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee
Q 013163          202 DVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN  281 (448)
Q Consensus       202 di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~  281 (448)
                      ++...++|+|+++|+|++|++++.|.+.|    |.                                             
T Consensus       658 dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~---------------------------------------------  688 (871)
T TIGR03835       658 NLVYEEEVPQILFFNNQIKEIKYTRHTVD----GN---------------------------------------------  688 (871)
T ss_pred             ceEEecccCHHHHhCCCeEEEEEEEeecc----CC---------------------------------------------
Confidence            34566778888888888888888776543    11                                             


Q ss_pred             eccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHh
Q 013163          282 WCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAI  361 (448)
Q Consensus       282 ~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl  361 (448)
                            |...+++.++++|+||||+++|++|+|+|+|+..++ + +|||+|+|++++|+.|+|+|+|||+++.|+|.+||
T Consensus       689 ------G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EAL  760 (871)
T TIGR03835       689 ------TESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAY  760 (871)
T ss_pred             ------CcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHh
Confidence                  112344568999999999999999999999998654 3 49999999999999999999999999999999999


Q ss_pred             cCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEE-CCCC--CCHHHHHHHHHH
Q 013163          362 LGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVS-IPTN--LTQRQRELIEEF  430 (448)
Q Consensus       362 lG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~-~P~~--ls~~q~~ll~~~  430 (448)
                      +|+++.|+||||++.|+||+++++|++++|+|+|||..+ +.+|||||+|+|. +++.  -|--|.+.+-+|
T Consensus       761 LGgtIeIpTLDGrVkLkIPpgTqpGqvLRIkGKGMP~~~-~~RGDLyV~f~V~~~~k~~~~~n~qv~~f~~l  831 (871)
T TIGR03835       761 NGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKTK-YDKGSLIVHLYYSSVMKKNDRTNVQVQQFNKL  831 (871)
T ss_pred             cCCEEEeeCCCCCEEEeeCCCCCCCcEEEECCCCCCCCC-CCCCCEEEEEEEeeccccCCcCChHHHHHHHH
Confidence            999999999999989999999999999999999999543 4689999999994 5543  233444443333

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=6.8e-22  Score=194.45  Aligned_cols=289  Identities=27%  Similarity=0.412  Sum_probs=171.6

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccccccccccccccCC
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNG  166 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~~  166 (448)
                      ..|||++|+|.++|+.+||++|||++|++||||+|+.. ..|+++|++|++||++|+|+.+|..||+||++++.+.....
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~   81 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS   81 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence            47999999999999999999999999999999998864 25666899999999999999999999999986655411100


Q ss_pred             CCCCCC----CCC---CCcccccccccccchh-hhcccccCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCC
Q 013163          167 GPGHEG----GFG---NPFQDIFNMENIFNFR-DIFRNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGV  238 (448)
Q Consensus       167 ~~~g~~----gf~---~~f~~~f~~~d~f~f~-~~f~~~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~  238 (448)
                      +....+    .+.   +.|..+|+..+.+... ..+.  ..+........-++..+.....-.  ......+..+.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  157 (306)
T KOG0714|consen   82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYR--DKNAAPGEEAFKSEGKAFQSLYGP--KRKQYDSSGSDRSAR  157 (306)
T ss_pred             CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCC--ccccccCccccccccccccccCCC--ccccccccccccccc
Confidence            000000    000   1123333311111000 0000  000000000000000000000000  000000000000000


Q ss_pred             --CCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEec
Q 013163          239 --PPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFR  316 (448)
Q Consensus       239 --~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g  316 (448)
                        .+......|                .....+..|.-..++.........-. .........+.+++++..|+.+....
T Consensus       158 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (306)
T KOG0714|consen  158 QSPPVEHPLRV----------------SLEDLYKGESKKMKISRQSFTSNGRE-GSSRSRYLSISIKPGWKEGTKITFPE  220 (306)
T ss_pred             CCCCccCCcce----------------eHHHhccccceeeecccccccCCccc-ccCccceeEEeccCCcccccceeccc
Confidence              000000000                00111112222222111111100001 23456888999999999999999999


Q ss_pred             cCCCCCCCCCCccEEEEEEEEecccccccCcceEEE--EEeCHHHHhcCCeeeeecCCCcE-EEEeC-CCCCCCcEEEEc
Q 013163          317 SGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD--SVLSVTQAILGGTIQVPTLTGDV-VLKVR-PGTQPGQKVVLK  392 (448)
Q Consensus       317 ~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~--~~Isl~eAllG~~~~v~tldG~~-~l~i~-~g~~~g~~~~l~  392 (448)
                      +|...+. ..|-++++.+..++|+.|.+.+++|...  ..|++.+|++|....++++++.. .+.+. .-..++...+++
T Consensus       221 ~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (306)
T KOG0714|consen  221 EGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTLDGRSYSLSINKDLIEPGEEDVIP  299 (306)
T ss_pred             cccccCC-cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecccCccccCcccccccCCCceeeec
Confidence            8887665 6788999999999999999999999999  99999999999999999999863 44444 567889999999


Q ss_pred             CCCccC
Q 013163          393 NKGIKT  398 (448)
Q Consensus       393 g~G~p~  398 (448)
                      ++|||.
T Consensus       300 ~~~~~~  305 (306)
T KOG0714|consen  300 GEGLPC  305 (306)
T ss_pred             CCCCCC
Confidence            999985

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=99.86  E-value=8.7e-22  Score=158.24  Aligned_cols=79  Identities=41%  Similarity=0.721  Sum_probs=68.9

Q ss_pred             ceEEEEEeCHHHHhcCCeeeeecCCC-cEEEEeCCCCCCCcEEEEcCCCccCCCCC-CCCcEEEEEEEECCCCCCHHHHH
Q 013163          348 NIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGIKTRNSF-SFGDQYVHFNVSIPTNLTQRQRE  425 (448)
Q Consensus       348 DL~~~~~Isl~eAllG~~~~v~tldG-~~~l~i~~g~~~g~~~~l~g~G~p~~~~~-~~GDL~V~~~V~~P~~ls~~q~~  425 (448)
                      |||++++||++||++|++++|+|+|| .+.|++|+++++|++++|+|+|||..... .+|||||+|+|.||++||++|++
T Consensus         1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~   80 (81)
T PF01556_consen    1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE   80 (81)
T ss_dssp             EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred             CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence            79999999999999999999999999 68999999999999999999999976554 89999999999999999999998


Q ss_pred             H
Q 013163          426 L  426 (448)
Q Consensus       426 l  426 (448)
                      |
T Consensus        81 l   81 (81)
T PF01556_consen   81 L   81 (81)
T ss_dssp             H
T ss_pred             C
Confidence            6

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.8e-20  Score=174.99  Aligned_cols=75  Identities=52%  Similarity=0.783  Sum_probs=71.0

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      ...|+|+|||++++|+.++||||||+||++||||+++++|++.++|++||+||+||+||.+|..||+||..++.-
T Consensus        29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999876643

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.4e-19  Score=164.29  Aligned_cols=100  Identities=28%  Similarity=0.489  Sum_probs=87.5

Q ss_pred             ccccccccchhHHHHHHhhhcCCcccccCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHH
Q 013163           54 SLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQ  133 (448)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~  133 (448)
                      +.++......|....++...+..++     ......|+|+||||+++||++|||+|||+|+++|||||++.-.+.++.|.
T Consensus        69 ~~~~i~lv~~W~v~~fL~y~i~~~~-----~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~  143 (230)
T KOG0721|consen   69 TKRKVFLVVGWAVIAFLIYKIMNSR-----RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFE  143 (230)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhh-----HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHH
Confidence            5566778899999999987765544     23567899999999999999999999999999999999985466788999


Q ss_pred             HHHHHHhhhcccccccccccccccc
Q 013163          134 EVSKAYEVLKDDEKRSVYDQVGHEA  158 (448)
Q Consensus       134 ~i~~Ay~~L~d~~~R~~yd~~g~~~  158 (448)
                      .|++||+.|+|+..|++|.+||+..
T Consensus       144 ~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen  144 AIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             HHHHHHHHhcchhhHHHHHHhCCCC
Confidence            9999999999999999999999754

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=6.8e-19  Score=172.04  Aligned_cols=73  Identities=51%  Similarity=0.834  Sum_probs=69.5

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV  160 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  160 (448)
                      ..|||++|||+.+|+.+||++|||+.|++||||+||+||+|.++|+.+.+||+||+|+..|+.||++|.....
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~   76 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSS   76 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence            5699999999999999999999999999999999999999999999999999999999999999999976543

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.5e-18  Score=174.03  Aligned_cols=76  Identities=42%  Similarity=0.735  Sum_probs=69.4

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD---PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      ..+.|||.+|+|+++||.+|||+|||++++.|||||+.+.   ..|++.|+.|.+|||||+||.+|++||.||+.+++.
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t   84 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT   84 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence            4457999999999999999999999999999999998732   349999999999999999999999999999988863

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.73  E-value=2.1e-18  Score=186.61  Aligned_cols=74  Identities=31%  Similarity=0.631  Sum_probs=68.7

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV  160 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  160 (448)
                      ....+||+||||+++||..|||+|||+||++||||+|+++ .|.++|++|++||+||+||.+|+.||+||..++.
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            3468999999999999999999999999999999999864 7888999999999999999999999999987654

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.7e-17  Score=154.67  Aligned_cols=69  Identities=55%  Similarity=0.930  Sum_probs=65.5

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHHHhhhccccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE-AEKKFQEVSKAYEVLKDDEKRSVYDQVG  155 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~~yd~~g  155 (448)
                      +..+||+||||+++|+..|||+|||++|++||||+++.++. ++++|+.|++||++|+|+.+|+.||+++
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            45799999999999999999999999999999999998885 9999999999999999999999999973

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.72  E-value=7.2e-18  Score=164.23  Aligned_cols=76  Identities=47%  Similarity=0.770  Sum_probs=68.1

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHhhhcccccccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP---EAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQ  162 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~  162 (448)
                      ...+|||+||||.++|+..||.+|||++|.+||||...+.+   .|+++|..|..|-|||+||++|+.||. |++.+...
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~E  469 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDPE  469 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCChh
Confidence            34689999999999999999999999999999999887533   399999999999999999999999998 77776654

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.71  E-value=6.2e-18  Score=129.49  Aligned_cols=63  Identities=49%  Similarity=0.847  Sum_probs=59.9

Q ss_pred             CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHhhhcccccccccc
Q 013163           90 DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEVLKDDEKRSVYD  152 (448)
Q Consensus        90 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~yd  152 (448)
                      |||+||||+++++.++||++|+++++++|||++..+. ++++.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999988765 68999999999999999999999997

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1e-17  Score=168.14  Aligned_cols=72  Identities=46%  Similarity=0.729  Sum_probs=66.4

Q ss_pred             CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhcccccccccccccc
Q 013163           85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH  156 (448)
Q Consensus        85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  156 (448)
                      +.+.+.||+||||.++|++.|||++||+||++||||+||+. .+|.++|+.|+.||+|||||..|+-||..-+
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            35668999999999999999999999999999999999865 5799999999999999999999999998654

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=3.8e-17  Score=163.54  Aligned_cols=118  Identities=25%  Similarity=0.461  Sum_probs=89.1

Q ss_pred             eeeccCCCCCCCCCCCC-------CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCCCe
Q 013163          225 QTELPCEACGGEGVPPG-------VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKGAR  290 (448)
Q Consensus       225 ~~~~~C~~C~GsG~~~~-------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G~g  290 (448)
                      +...+|++|+|+|....       ...++|+.|+|+|.++        ..+|++|+|.|.+.+       .+-....|..
T Consensus       157 t~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i--------~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~  228 (371)
T COG0484         157 TDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII--------KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDR  228 (371)
T ss_pred             CCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC--------CCCCCCCCCCCeEeeeeEEEEECCCCCccCCE
Confidence            35689999999997532       2367899999999987        789999999997643       1111222221


Q ss_pred             EEecce--------------------------------------------------------EEEEEecCCCCCCceeEE
Q 013163          291 VVKGSK--------------------------------------------------------SVKLDIMPGVDNNETLKV  314 (448)
Q Consensus       291 ~v~~~k--------------------------------------------------------~l~V~Ip~G~~~G~~i~~  314 (448)
                      .+...+                                                        .++|+||||+++|++++|
T Consensus       229 ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl  308 (371)
T COG0484         229 IRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRL  308 (371)
T ss_pred             EEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEE
Confidence            111111                                                        478889999999999999


Q ss_pred             eccCCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163          315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH  350 (448)
Q Consensus       315 ~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~  350 (448)
                      +|+|.+...+...|||||+|+|..+..+..+...|+
T Consensus       309 ~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL  344 (371)
T COG0484         309 RGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELL  344 (371)
T ss_pred             cCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHH
Confidence            999999887777899999999999988766665543

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.3e-17  Score=152.60  Aligned_cols=71  Identities=54%  Similarity=0.917  Sum_probs=65.7

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHhhhcccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNK--DDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH  156 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  156 (448)
                      .+.+|+|+||||.++|+..+|++||++||++||||+++  ++.+|.++|++++.||+||+|+++|+.||+.|.
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            45569999999999999999999999999999999994  456799999999999999999999999999885

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.63  E-value=5.7e-16  Score=116.82  Aligned_cols=59  Identities=58%  Similarity=0.909  Sum_probs=54.9

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHhhhccccc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD-DPEAEKKFQEVSKAYEVLKDDEK  147 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~-~~~a~~~f~~i~~Ay~~L~d~~~  147 (448)
                      .|||++|||+++++.++||+||+++++++|||++.+ .+.+++.|++|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            489999999999999999999999999999999986 57789999999999999999853

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.61  E-value=1.5e-15  Score=112.35  Aligned_cols=55  Identities=65%  Similarity=1.037  Sum_probs=51.9

Q ss_pred             CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcc
Q 013163           90 DYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD  144 (448)
Q Consensus        90 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d  144 (448)
                      |||++|||+++++.++||++||+|+++||||++...+.+.+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999997556789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PHA03102 Small T antigen; Reviewed

Probab=99.57  E-value=2.1e-15  Score=134.17  Aligned_cols=67  Identities=24%  Similarity=0.426  Sum_probs=61.5

Q ss_pred             cCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccc
Q 013163           89 RDYYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAF  159 (448)
Q Consensus        89 ~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  159 (448)
                      +.+|++|||+++|  |.+|||+|||++|+++|||++++    +++|++|++||++|+|+.+|..||.+|.+..
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~   73 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSS   73 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence            5689999999999  99999999999999999999753    4689999999999999999999999997543

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.54  E-value=2e-15  Score=150.85  Aligned_cols=103  Identities=31%  Similarity=0.557  Sum_probs=88.3

Q ss_pred             ccccccccccchhHHHHHHhhhcCCcccccCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----Ch
Q 013163           52 NFSLKNANNHRNWLLLRLLNSNLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD-----DP  126 (448)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~-----~~  126 (448)
                      -|+.++...+.+|+..+++..++....    .......|+|||||++.+++..|||++||+|+.||||||-+.     ..
T Consensus        65 If~lR~If~ivgWl~i~~L~~~I~~~k----~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rs  140 (610)
T COG5407          65 IFKLRKIFTIVGWLVISYLISNIRTLK----IEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRS  140 (610)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHH
Confidence            567778889999999999988774411    112456899999999999999999999999999999999654     35


Q ss_pred             HHHHHHHHHHHHHhhhcccccccccccccccc
Q 013163          127 EAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEA  158 (448)
Q Consensus       127 ~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  158 (448)
                      +.|+++++|++||+.|+|+..|++|-.||+..
T Consensus       141 e~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd  172 (610)
T COG5407         141 EYEEKYKTITKAYGLLTDKKRRENYLNYGTPD  172 (610)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence            78999999999999999999999999999754

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.42  E-value=1.9e-13  Score=125.03  Aligned_cols=65  Identities=26%  Similarity=0.478  Sum_probs=58.0

Q ss_pred             cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163           89 RDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        89 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      .|||++|||++.  ++..+|+++||+|+++||||+....++     +.++|..|++||++|+||.+|+.|+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            389999999995  788999999999999999999765432     56799999999999999999999984

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=2.8e-13  Score=138.68  Aligned_cols=119  Identities=26%  Similarity=0.477  Sum_probs=87.0

Q ss_pred             eeccCCCCCCCCCCC-------C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCC-
Q 013163          226 TELPCEACGGEGVPP-------G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKG-  288 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~-------~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G-  288 (448)
                      ....|+.|+|+|...       |  ....+|+.|+|+|+++        ...|..|+|.|.+..       .+-..-.| 
T Consensus       168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  239 (369)
T PRK14282        168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP--------GEYCHECGGSGRIRRRVRTTVKIPAGVEDGT  239 (369)
T ss_pred             CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC--------CCCCCCCCCceeEEEEEEEEEEeCCCCCCCC
Confidence            346899999999642       1  1255899999999865        567999999985432       11101111 


Q ss_pred             ------------------------------------------------------CeEEe--cceEEEEEecCCCCCCcee
Q 013163          289 ------------------------------------------------------ARVVK--GSKSVKLDIMPGVDNNETL  312 (448)
Q Consensus       289 ------------------------------------------------------~g~v~--~~k~l~V~Ip~G~~~G~~i  312 (448)
                                                                            ...+.  ..+.++|.||+|+++|+++
T Consensus       240 ~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~i  319 (369)
T PRK14282        240 VLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVF  319 (369)
T ss_pred             EEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEE
Confidence                                                                  11111  1236899999999999999


Q ss_pred             EEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163          313 KVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD  352 (448)
Q Consensus       313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  352 (448)
                      +|+|+|.+.+.++.+|||||+|+|+.|+.|++++.+|+.+
T Consensus       320 ri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~  359 (369)
T PRK14282        320 RLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKE  359 (369)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999999876555689999999999999999999887543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.3e-13  Score=137.57  Aligned_cols=68  Identities=47%  Similarity=0.753  Sum_probs=64.3

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      +..+|||.|||++++|+..|||+|||++|+.||||+|... .++|.+|++|-+||.+|+||.+|..||.
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds  438 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS  438 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence            3468999999999999999999999999999999999877 7899999999999999999999999996

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=8.2e-14  Score=130.39  Aligned_cols=68  Identities=51%  Similarity=0.839  Sum_probs=63.1

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVG  155 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g  155 (448)
                      ...|.|++|||+++|+.+||++|||+||+++|||++++ +++.+.|+.|..||++|.|.+.|..||-+-
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyal   98 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYAL   98 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence            45799999999999999999999999999999999985 777799999999999999999999999643

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.39  E-value=3.2e-13  Score=122.76  Aligned_cols=65  Identities=31%  Similarity=0.519  Sum_probs=57.3

Q ss_pred             cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHhhhccccccccccc
Q 013163           89 RDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        89 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      .|||++|||++.  ++..+|+++||+|+++||||++.+..+   +.+.+..|++||++|+||.+|+.|+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            489999999996  789999999999999999999875332   34568899999999999999999975

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=6.6e-13  Score=121.28  Aligned_cols=67  Identities=24%  Similarity=0.434  Sum_probs=59.9

Q ss_pred             CccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163           87 SARDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        87 ~~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      ...|||++|||++.  .+..+|+++||+|+++||||++...++     +.++|..||+||++|+||.+|+.|+.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            45799999999997  678999999999999999999876543     56789999999999999999999985

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=7.3e-13  Score=121.49  Aligned_cols=66  Identities=24%  Similarity=0.413  Sum_probs=58.2

Q ss_pred             ccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHH-----HHHHHHHHHHhhhccccccccccc
Q 013163           88 ARDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPEAE-----KKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        88 ~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~a~-----~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      ..|||++|||++.  ++..+|+++||+|+++||||++...++++     +.+..||+||++|+||.+|+.|+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll   77 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL   77 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence            3799999999995  68999999999999999999987665544     446899999999999999999984

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.36  E-value=9e-13  Score=134.78  Aligned_cols=119  Identities=25%  Similarity=0.474  Sum_probs=88.4

Q ss_pred             eeccCCCCCCCCCCC-----CC----ccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCC-
Q 013163          226 TELPCEACGGEGVPP-----GV----KPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKG-  288 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~-----~~----~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G-  288 (448)
                      ....|+.|+|+|...     |.    ...+|+.|+|.|+++        ...|+.|+|.|.+..       .+-..-.| 
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  235 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP--------EEKCPRCNGTGTVVVNEDISVKIPKGATDNL  235 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc--------cCCCCCCCCceeEEEeeEEEEEECCCCCCCc
Confidence            356899999999642     11    146899999999865        678999999986532       11111111 


Q ss_pred             ----------------------------------------------------CeEEec-ceEEEEEecCCCCCCceeEEe
Q 013163          289 ----------------------------------------------------ARVVKG-SKSVKLDIMPGVDNNETLKVF  315 (448)
Q Consensus       289 ----------------------------------------------------~g~v~~-~k~l~V~Ip~G~~~G~~i~~~  315 (448)
                                                                          ...+.. ..+++|.||+|+++|++++|+
T Consensus       236 ~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~  315 (365)
T PRK14290        236 RLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIK  315 (365)
T ss_pred             EEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEEC
Confidence                                                                111111 126889999999999999999


Q ss_pred             ccCCCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163          316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD  352 (448)
Q Consensus       316 g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  352 (448)
                      |+|.+.+.+..+|||||+|+|..|+.|++++.+|+.+
T Consensus       316 g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~  352 (365)
T PRK14290        316 GAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIRE  352 (365)
T ss_pred             CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9999887666789999999999999999999888655

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=99.36  E-value=9.3e-13  Score=101.48  Aligned_cols=61  Identities=48%  Similarity=1.107  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCCCCccccCcCCCCCCceEEee----cceeeeEecccCCceeEEE-eeeccccCCCe
Q 013163          230 CEACGGEGVPPGVKPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHII-TNWCKSCKGAR  290 (448)
Q Consensus       230 C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~-~~~C~~C~G~g  290 (448)
                      |+.|+|+|..++..+.+|+.|+|+|++....    +.++++.+|+.|+|+|+++ +++|+.|+|.+
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            8999999999999999999999999987543    5678999999999999999 99999999974

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=1.8e-12  Score=132.42  Aligned_cols=116  Identities=22%  Similarity=0.423  Sum_probs=84.8

Q ss_pred             eccCCCCCCCCCCC---C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCC------
Q 013163          227 ELPCEACGGEGVPP---G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKG------  288 (448)
Q Consensus       227 ~~~C~~C~GsG~~~---~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G------  288 (448)
                      ...|+.|+|+|...   |  ....+|+.|+|+|.++        ..+|..|+|.|.+..       .+-..-.|      
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~  234 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII--------SNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMR  234 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc--------CCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEe
Confidence            46799999998642   1  2356899999999875        567999999985532       01000011      


Q ss_pred             -------------------------------------------------CeEEe--cceEEEEEecCCCCCCceeEEecc
Q 013163          289 -------------------------------------------------ARVVK--GSKSVKLDIMPGVDNNETLKVFRS  317 (448)
Q Consensus       289 -------------------------------------------------~g~v~--~~k~l~V~Ip~G~~~G~~i~~~g~  317 (448)
                                                                       ...+.  ..+.++|.||+|+++|++++|+|+
T Consensus       235 g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~Gk  314 (365)
T PRK14285        235 GKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNE  314 (365)
T ss_pred             eccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCC
Confidence                                                             11111  122688999999999999999999


Q ss_pred             CCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163          318 GGADPDGNQPGDLYVTIKVREDPVFRREGANIH  350 (448)
Q Consensus       318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~  350 (448)
                      |.+.+.+...|||||+|+|+.|+.|.+++..|+
T Consensus       315 G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l  347 (365)
T PRK14285        315 GMPILHTEKFGNLILIIKIKTPKNLNSNAIKLL  347 (365)
T ss_pred             CccCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            998776556799999999999999998887654

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.34  E-value=9.1e-13  Score=134.79  Aligned_cols=118  Identities=19%  Similarity=0.388  Sum_probs=85.1

Q ss_pred             eccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------eccc---------
Q 013163          227 ELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WCKS---------  285 (448)
Q Consensus       227 ~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C~~---------  285 (448)
                      ...|+.|+|+|...     .....+|+.|+|+|+.+        ...|..|+|.|.+...       +-..         
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~  232 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI--------VSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLR  232 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec--------CcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEc
Confidence            46799999998642     11356899999999865        5679999998865320       0000         


Q ss_pred             ----------------------------------------------cCCCeEEec-ceEEEEEecCCCCCCceeEEeccC
Q 013163          286 ----------------------------------------------CKGARVVKG-SKSVKLDIMPGVDNNETLKVFRSG  318 (448)
Q Consensus       286 ----------------------------------------------C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~~~g~G  318 (448)
                                                                    +.+...+.. ...++|.||+|+++|++++|+|+|
T Consensus       233 g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G  312 (366)
T PRK14294        233 GEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKG  312 (366)
T ss_pred             cCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCC
Confidence                                                          001111110 014688899999999999999999


Q ss_pred             CCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163          319 GADPDGNQPGDLYVTIKVREDPVFRREGANIHVD  352 (448)
Q Consensus       319 ~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  352 (448)
                      .+.+.+..+|||||+|+|..|+.|.+++.+|+..
T Consensus       313 ~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~  346 (366)
T PRK14294        313 IPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTE  346 (366)
T ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            9877656789999999999999999998877544

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=7e-13  Score=133.75  Aligned_cols=66  Identities=36%  Similarity=0.586  Sum_probs=63.5

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccc
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQV  154 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~  154 (448)
                      ..|+|.+|||++++|+++||+.||++|...|||||. .|.|+|.|+.++.|||+|+|+++|..||.-
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            689999999999999999999999999999999998 689999999999999999999999999963

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.33  E-value=1.2e-12  Score=134.25  Aligned_cols=56  Identities=21%  Similarity=0.398  Sum_probs=49.4

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD  352 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  352 (448)
                      .++|.||+|+++|++++|+|+|.+...+...|||||+|+|..|+.+++++.+|+.+
T Consensus       292 ~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~  347 (377)
T PRK14298        292 KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLRE  347 (377)
T ss_pred             CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            46888999999999999999999876656689999999999999999998887544

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.33  E-value=1.2e-12  Score=134.31  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=49.9

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEE
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVD  352 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~  352 (448)
                      .++|.||+|+++|++++|+|+|.+.+.+...|||||+|+|..|+.|++++.+|+.+
T Consensus       289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~  344 (371)
T PRK10767        289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEE  344 (371)
T ss_pred             cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence            57888999999999999999999876656789999999999999999999887554

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.29  E-value=3.8e-12  Score=107.71  Aligned_cols=54  Identities=26%  Similarity=0.382  Sum_probs=48.0

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK  143 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~  143 (448)
                      +...++|+||||+++||.+|||++||+|++++|||++. +   .+.|++|++||++|.
T Consensus        62 Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~  115 (116)
T PTZ00100         62 MSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence            44579999999999999999999999999999999853 2   357899999999985

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.27  E-value=5.8e-12  Score=129.94  Aligned_cols=55  Identities=27%  Similarity=0.385  Sum_probs=48.2

Q ss_pred             eEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163          296 KSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH  350 (448)
Q Consensus       296 k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~  350 (448)
                      ..++|+||+|+++|++++|+|+|.+.+.+..+|||||+|+|..++.++.++..|+
T Consensus       306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll  360 (391)
T PRK14284        306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELL  360 (391)
T ss_pred             cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence            5788999999999999999999998776567899999999999988887776654

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.27  E-value=3.9e-12  Score=130.37  Aligned_cols=115  Identities=23%  Similarity=0.481  Sum_probs=82.4

Q ss_pred             eccCCCCCCCCCCC---C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------ec-----------
Q 013163          227 ELPCEACGGEGVPP---G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WC-----------  283 (448)
Q Consensus       227 ~~~C~~C~GsG~~~---~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C-----------  283 (448)
                      ...|+.|+|+|...   +  ....+|+.|+|+|.++        ..+|..|+|.|.+...       +-           
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~  233 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII--------KNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHT  233 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe--------CCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEe
Confidence            46799999998642   1  1345899999999875        5679999998865320       00           


Q ss_pred             -------------------------------------------cc-cCCCeEEec--ceEEEEEecCCCCCCceeEEecc
Q 013163          284 -------------------------------------------KS-CKGARVVKG--SKSVKLDIMPGVDNNETLKVFRS  317 (448)
Q Consensus       284 -------------------------------------------~~-C~G~g~v~~--~k~l~V~Ip~G~~~G~~i~~~g~  317 (448)
                                                                 .. +.+...+..  .+.++|+||+|+++|++++|+|+
T Consensus       234 g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~  313 (372)
T PRK14300        234 GEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSK  313 (372)
T ss_pred             ccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCC
Confidence                                                       00 111111211  24789999999999999999999


Q ss_pred             CCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163          318 GGADPDGNQPGDLYVTIKVREDPVFRREGANI  349 (448)
Q Consensus       318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  349 (448)
                      |.+.+.+..+|||||+|+|..|..+.-+...+
T Consensus       314 G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~  345 (372)
T PRK14300        314 GMSKMRSTIRGDMLTHIHVEVPKNLSKRQREL  345 (372)
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            99877656789999999999998776655443

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.26  E-value=4e-12  Score=130.24  Aligned_cols=54  Identities=24%  Similarity=0.346  Sum_probs=46.7

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH  350 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~  350 (448)
                      .++|+||+|+++|++++|+|+|.+.+.+..+|||||+|+|..|+.+..+..+++
T Consensus       291 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l  344 (373)
T PRK14301        291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELL  344 (373)
T ss_pred             cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            478899999999999999999999876667899999999999988777665543

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.26  E-value=7e-12  Score=122.63  Aligned_cols=59  Identities=39%  Similarity=0.546  Sum_probs=52.3

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHHHHHHHhhhcc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD--D-----PEAEKKFQEVSKAYEVLKD  144 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~--~-----~~a~~~f~~i~~Ay~~L~d  144 (448)
                      +...++|++|||++++|.+|||+|||+|+++||||++.+  .     +.|+++|++|++||++|+.
T Consensus       197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999642  1     3588999999999999985

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.25  E-value=5.3e-12  Score=129.29  Aligned_cols=118  Identities=24%  Similarity=0.439  Sum_probs=84.0

Q ss_pred             eeccCCCCCCCCCCCC---------CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------eccc----
Q 013163          226 TELPCEACGGEGVPPG---------VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WCKS----  285 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C~~----  285 (448)
                      ....|+.|+|+|....         ....+|+.|.|+|.++        ...|..|+|.|.+...       +-..    
T Consensus       154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~  225 (371)
T PRK14287        154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII--------KQKCATCGGKGKVRKRKKINVKVPAGIDHGQ  225 (371)
T ss_pred             CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc--------cccCCCCCCeeEEeeeEEEEEEECCcCCCCC
Confidence            3467999999996421         1246899999999875        5679999998855321       0000    


Q ss_pred             ---------------------------------------------------cCCCeEEec-ceEEEEEecCCCCCCceeE
Q 013163          286 ---------------------------------------------------CKGARVVKG-SKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       286 ---------------------------------------------------C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~  313 (448)
                                                                         |.+...+.. ...++|+||+|+++|++++
T Consensus       226 ~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~r  305 (371)
T PRK14287        226 QLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFR  305 (371)
T ss_pred             EEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEE
Confidence                                                               000111110 0147888999999999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecccccccCcceEE
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHV  351 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~  351 (448)
                      |+|+|.+...+...|||||+|+|..|+.++++...|+.
T Consensus       306 i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~  343 (371)
T PRK14287        306 LRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMR  343 (371)
T ss_pred             EcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHH
Confidence            99999987665668999999999999988887766543

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.23  E-value=1.3e-11  Score=126.72  Aligned_cols=114  Identities=21%  Similarity=0.462  Sum_probs=80.6

Q ss_pred             eccCCCCCCCCCCC-------C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eec-------
Q 013163          227 ELPCEACGGEGVPP-------G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWC-------  283 (448)
Q Consensus       227 ~~~C~~C~GsG~~~-------~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C-------  283 (448)
                      ...|+.|+|+|...       +  ....+|+.|+|+|.++        ..+|+.|+|.|.+..       .+-       
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  227 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI--------PDPCHECAGDGRVRARREITVKIPAGVGDGMR  227 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee--------CCCCCCCCCceeEecceEEEEEECCCCCCCcE
Confidence            45799999999642       1  1245899999999875        567999999985532       000       


Q ss_pred             ------------------------------------------------cccCCCeEEec--ceEEEEEecCCCCCCceeE
Q 013163          284 ------------------------------------------------KSCKGARVVKG--SKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       284 ------------------------------------------------~~C~G~g~v~~--~k~l~V~Ip~G~~~G~~i~  313 (448)
                                                                      ..|.+...+..  ...++|.||+|+++|++++
T Consensus       228 i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lr  307 (378)
T PRK14278        228 IRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVIT  307 (378)
T ss_pred             EEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEE
Confidence                                                            01111112221  3468899999999999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      |+|+|.+...+...|||||+|+|.-+..+..+...
T Consensus       308 l~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~  342 (378)
T PRK14278        308 LRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIE  342 (378)
T ss_pred             ECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHH
Confidence            99999987665678999999999977665544433

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=1.5e-11  Score=126.02  Aligned_cols=115  Identities=22%  Similarity=0.402  Sum_probs=81.2

Q ss_pred             eccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe---------------------
Q 013163          227 ELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT---------------------  280 (448)
Q Consensus       227 ~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~---------------------  280 (448)
                      ...|+.|+|+|...     .....+|+.|+|+|+++        ...|..|+|.|.+..                     
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~  238 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI--------SNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS  238 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe--------cccCCCCCCCcEEecceEEEEEECCCCCCCCEEEEC
Confidence            36799999998542     12345899999999865        567999999886532                     


Q ss_pred             ---eeccc--------------------------------------cCCCeEEe--cceEEEEEecCCCCCCceeEEecc
Q 013163          281 ---NWCKS--------------------------------------CKGARVVK--GSKSVKLDIMPGVDNNETLKVFRS  317 (448)
Q Consensus       281 ---~~C~~--------------------------------------C~G~g~v~--~~k~l~V~Ip~G~~~G~~i~~~g~  317 (448)
                         .+...                                      +.+...+.  ..+.++|+||+|+++|++++|+|+
T Consensus       239 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~  318 (372)
T PRK14286        239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGH  318 (372)
T ss_pred             CccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCC
Confidence               01110                                      00111111  133688999999999999999999


Q ss_pred             CCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163          318 GGADPDGNQPGDLYVTIKVREDPVFRREGANI  349 (448)
Q Consensus       318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  349 (448)
                      |.+...+...|||||+|+|.-++.+..+..+|
T Consensus       319 G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~  350 (372)
T PRK14286        319 GMPYLGAYGKGDQHVIVKIEIPKKITRRQREL  350 (372)
T ss_pred             CCCCCCCCCCCcEEEEEEEECCCCCCHHHHHH
Confidence            99876656689999999999888766665543

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=1.9e-11  Score=125.11  Aligned_cols=116  Identities=20%  Similarity=0.364  Sum_probs=83.0

Q ss_pred             eeccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------eccccCC-----
Q 013163          226 TELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WCKSCKG-----  288 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C~~C~G-----  288 (448)
                      ....|+.|+|+|...     .....+|+.|+|+|+++        ...|..|+|.|.+...       +-..-.|     
T Consensus       155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l  226 (369)
T PRK14288        155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII--------KTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVL  226 (369)
T ss_pred             CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc--------cccCccCCCcceEEEEEEEEEecCCCCCCCCEEEE
Confidence            346899999999642     12245899999999875        5679999999865421       1001001     


Q ss_pred             -------------------------------------------------CeEEec--ceEEEEEecCCCCCCceeEEecc
Q 013163          289 -------------------------------------------------ARVVKG--SKSVKLDIMPGVDNNETLKVFRS  317 (448)
Q Consensus       289 -------------------------------------------------~g~v~~--~k~l~V~Ip~G~~~G~~i~~~g~  317 (448)
                                                                       .-.+..  .+.++|.||+|+++|++++|+|+
T Consensus       227 ~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~  306 (369)
T PRK14288        227 KNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNE  306 (369)
T ss_pred             ccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCC
Confidence                                                             001110  22588999999999999999999


Q ss_pred             CCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163          318 GGADPDGNQPGDLYVTIKVREDPVFRREGANI  349 (448)
Q Consensus       318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  349 (448)
                      |.+.+.+...|||||+|+|+.|+.+..+...+
T Consensus       307 G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~  338 (369)
T PRK14288        307 GVKHPESSYRGSLIVELQVIYPKSLNKEQQEL  338 (369)
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            99977645579999999999998877665443

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.22  E-value=1.2e-11  Score=126.89  Aligned_cols=115  Identities=25%  Similarity=0.502  Sum_probs=79.5

Q ss_pred             eeccCCCCCCCCCCC-------C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee---------------
Q 013163          226 TELPCEACGGEGVPP-------G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN---------------  281 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~-------~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------  281 (448)
                      ....|+.|+|+|...       +  ....+|+.|+|+|+++        ..+|+.|+|.|.+.+.               
T Consensus       159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~  230 (376)
T PRK14280        159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI--------KEKCPTCHGKGKVRKRKKINVKIPAGVDNGQ  230 (376)
T ss_pred             CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee--------cCCCCCCCCceEEEEEEEEEEEeCCCCcCCc
Confidence            346799999998642       1  1345899999999865        5679999999865320               


Q ss_pred             ---------ecc--------------------------------------ccCCCeEEec-ceEEEEEecCCCCCCceeE
Q 013163          282 ---------WCK--------------------------------------SCKGARVVKG-SKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       282 ---------~C~--------------------------------------~C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~  313 (448)
                               +..                                      -+.+...+.. ...++|.||+|+++|++++
T Consensus       231 ~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~  310 (376)
T PRK14280        231 QIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFR  310 (376)
T ss_pred             EEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEE
Confidence                     000                                      0001111110 0147888999999999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      |+|+|.+...+...|||||+|+|..++.+..+...
T Consensus       311 i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~  345 (376)
T PRK14280        311 LKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKE  345 (376)
T ss_pred             EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence            99999987655678999999999988765544433

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.22  E-value=1.3e-11  Score=125.94  Aligned_cols=53  Identities=30%  Similarity=0.453  Sum_probs=47.1

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANI  349 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  349 (448)
                      .++|.||+|+++|++++|+|+|.+.+.+..+|||||+|+|..++.+++++.++
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~  346 (354)
T TIGR02349       294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKEL  346 (354)
T ss_pred             eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence            57899999999999999999999877666789999999999999888877654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.21  E-value=1.2e-11  Score=127.61  Aligned_cols=114  Identities=26%  Similarity=0.434  Sum_probs=80.0

Q ss_pred             eeccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------ec----------
Q 013163          226 TELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WC----------  283 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C----------  283 (448)
                      ....|+.|+|+|...     .....+|+.|+|+|+++        ...|..|+|.|.+...       +-          
T Consensus       189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~  260 (392)
T PRK14279        189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII--------EDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRL  260 (392)
T ss_pred             CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe--------CCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEE
Confidence            346899999999652     12356899999999876        5679999999866420       00          


Q ss_pred             -------c--------------------------------------ccCCCeEEec-ceEEEEEecCCCCCCceeEEecc
Q 013163          284 -------K--------------------------------------SCKGARVVKG-SKSVKLDIMPGVDNNETLKVFRS  317 (448)
Q Consensus       284 -------~--------------------------------------~C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~~~g~  317 (448)
                             .                                      .|.+...+.. ...++|+||+|+++|++++|+|+
T Consensus       261 ~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri~g~  340 (392)
T PRK14279        261 AGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGR  340 (392)
T ss_pred             eCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEECCC
Confidence                   0                                      0000001100 11578899999999999999999


Q ss_pred             CCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          318 GGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      |.+... +.+|||||+|+|.-++.+..+...
T Consensus       341 G~p~~~-~~~GDL~I~~~v~~P~~Ls~~q~~  370 (392)
T PRK14279        341 GVPKRS-GGAGDLLVTVKVAVPPNLDGAAAE  370 (392)
T ss_pred             CCCCCC-CCCCCEEEEEEEECCCCCCHHHHH
Confidence            998643 568999999999988765544433

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=4.2e-11  Score=122.90  Aligned_cols=121  Identities=23%  Similarity=0.432  Sum_probs=87.1

Q ss_pred             CccccCcCCCCCCceEEeecceeeeEecccCCceeEEE------------eeeccccCCCeEEecceEEEEEecCCCCCC
Q 013163          242 VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHII------------TNWCKSCKGARVVKGSKSVKLDIMPGVDNN  309 (448)
Q Consensus       242 ~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~------------~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G  309 (448)
                      .+...|+.|.|+|...     -....+|+.|+|+|.+.            ..+|..|.|.|.+....     .       
T Consensus       141 ~r~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~-----C-------  203 (374)
T PRK14293        141 PHLETCETCRGSGAKP-----GTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDP-----C-------  203 (374)
T ss_pred             eccccCCCCCCcCCCC-----CCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccC-----C-------
Confidence            3466899999999743     11246899999999754            25799999988643211     0       


Q ss_pred             ceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEE
Q 013163          310 ETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKV  389 (448)
Q Consensus       310 ~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~  389 (448)
                        -.                                                |.+...|.. ...+.|.||||+++|+++
T Consensus       204 --~~------------------------------------------------C~G~g~v~~-~~~~~V~IppG~~~G~~i  232 (374)
T PRK14293        204 --DA------------------------------------------------CGGQGVKQV-TKKLKINIPAGVDTGTRL  232 (374)
T ss_pred             --CC------------------------------------------------CCCCccccc-ceEEEEEeCCCCCCCCEE
Confidence              00                                                111111111 124578999999999999


Q ss_pred             EEcCCCccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Q 013163          390 VLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEF  430 (448)
Q Consensus       390 ~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~  430 (448)
                      +|+|+|++.......|||||+|+|..|+.++.++.+|+.++
T Consensus       233 ~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~  273 (374)
T PRK14293        233 RVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEI  273 (374)
T ss_pred             EEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEe
Confidence            99999998654456899999999999999999998876554

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.20  E-value=1.4e-11  Score=126.55  Aligned_cols=52  Identities=19%  Similarity=0.332  Sum_probs=43.7

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      .++|.||+|+++|++++|+|+|.+.+.+..+|||||+|+|.-+..+..+...
T Consensus       297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~  348 (380)
T PRK14276        297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKE  348 (380)
T ss_pred             cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence            4788899999999999999999987765678999999999988765554433

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.17  E-value=1.8e-11  Score=126.38  Aligned_cols=115  Identities=23%  Similarity=0.363  Sum_probs=80.2

Q ss_pred             eeccCCCCCCCCCCCC---------CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee-------ecc-----
Q 013163          226 TELPCEACGGEGVPPG---------VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN-------WCK-----  284 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~-------~C~-----  284 (448)
                      ....|+.|+|+|....         ....+|+.|+|+|+++        ...|+.|+|.|.+...       +-.     
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~  249 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV--------KDRCPACYGEGIKQGEVTVKVTVPAGVQDGN  249 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee--------CCCCCCCCCCccEecceEEEEecCCCCCCCC
Confidence            3468999999996421         1245899999999875        5679999998865320       000     


Q ss_pred             --------------------------------------------------ccCCCeEEec-ceEEEEEecCCCCCCceeE
Q 013163          285 --------------------------------------------------SCKGARVVKG-SKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       285 --------------------------------------------------~C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~  313 (448)
                                                                        -+.+...+.. ...++|+||+|+++|++++
T Consensus       250 ~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~r  329 (397)
T PRK14281        250 YLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLR  329 (397)
T ss_pred             EEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCcEEE
Confidence                                                              0111111111 1147888999999999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      |+|+|.+.+.+...|||||+|+|.-+..+..+...
T Consensus       330 i~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~  364 (397)
T PRK14281        330 IPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKE  364 (397)
T ss_pred             EcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHH
Confidence            99999987665678999999999977765554433

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.17  E-value=2.6e-11  Score=124.69  Aligned_cols=52  Identities=17%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      .++|.||+|+++|++++|+|+|.+...+...|||||+|+|.-+..+..+...
T Consensus       299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~  350 (380)
T PRK14297        299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKE  350 (380)
T ss_pred             cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHH
Confidence            5788899999999999999999987665678999999999977765544433

>PHA02624 large T antigen; Provisional

Probab=99.14  E-value=3.6e-11  Score=127.24  Aligned_cols=60  Identities=27%  Similarity=0.484  Sum_probs=55.8

Q ss_pred             ccCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccc
Q 013163           88 ARDYYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVY  151 (448)
Q Consensus        88 ~~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~y  151 (448)
                      .+++|++|||+++|  +.+|||+|||++|++||||++.    ++++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence            46899999999999  9999999999999999999974    257899999999999999999998

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.13  E-value=8e-11  Score=121.29  Aligned_cols=113  Identities=26%  Similarity=0.462  Sum_probs=78.6

Q ss_pred             eccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eecc----------
Q 013163          227 ELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCK----------  284 (448)
Q Consensus       227 ~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~----------  284 (448)
                      ...|+.|+|+|...     .....+|+.|+|+|.++        ..+|..|.|.|.+..       .+-.          
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~--------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~  254 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA--------DDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLR  254 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe--------ccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEc
Confidence            46799999998642     12345899999999865        567999999885532       0000          


Q ss_pred             ---------------------------------------------ccCCCeEEe--cceEEEEEecCCCCCCceeEEecc
Q 013163          285 ---------------------------------------------SCKGARVVK--GSKSVKLDIMPGVDNNETLKVFRS  317 (448)
Q Consensus       285 ---------------------------------------------~C~G~g~v~--~~k~l~V~Ip~G~~~G~~i~~~g~  317 (448)
                                                                   .+.+...+.  ..+.++|+||+|+++|++++|+|+
T Consensus       255 g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~  334 (389)
T PRK14295        255 GKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGK  334 (389)
T ss_pred             ccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCC
Confidence                                                         011111111  123788999999999999999999


Q ss_pred             CCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          318 GGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       318 G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      |.+.. ++.+|||||+|+|.-+..+.-+...
T Consensus       335 G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~  364 (389)
T PRK14295        335 GAVRK-DGTRGDLLVTVEVAVPKDLSGKARE  364 (389)
T ss_pred             CcCCC-CCCCCCEEEEEEEECCCCCCHHHHH
Confidence            99864 3568999999999977765544433

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.12  E-value=5e-11  Score=122.79  Aligned_cols=52  Identities=17%  Similarity=0.263  Sum_probs=42.6

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      .++|.||+|+++|++++|+|+|.+...+...|||||+|+|.-++.+..+..+
T Consensus       306 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~  357 (386)
T PRK14277        306 KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKE  357 (386)
T ss_pred             CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence            3678899999999999999999987655568999999999977655544433

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.12  E-value=4.5e-11  Score=123.19  Aligned_cols=50  Identities=24%  Similarity=0.381  Sum_probs=42.4

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccC
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREG  346 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G  346 (448)
                      .++|.||+|+++|++++++|+|.+.+.+..+|||||+|+|+-+..+..+.
T Consensus       305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q  354 (386)
T PRK14289        305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEE  354 (386)
T ss_pred             eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHH
Confidence            57889999999999999999999877666789999999999766544443

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.11  E-value=7e-11  Score=121.43  Aligned_cols=52  Identities=23%  Similarity=0.320  Sum_probs=43.0

Q ss_pred             EEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcc
Q 013163          297 SVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       297 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      .++|.||+|+++|++++|+|+|.+...+...|||||+|+|.-++....+...
T Consensus       297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~  348 (378)
T PRK14283        297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKE  348 (378)
T ss_pred             eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHH
Confidence            5789999999999999999999987655578999999999976655544433

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.10  E-value=8e-11  Score=120.62  Aligned_cols=114  Identities=18%  Similarity=0.411  Sum_probs=77.7

Q ss_pred             eccCCCCCCCCCCCCC---------ccccCcCCCCCCceEEeecceeeeEecccCCceeEEEee----------------
Q 013163          227 ELPCEACGGEGVPPGV---------KPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITN----------------  281 (448)
Q Consensus       227 ~~~C~~C~GsG~~~~~---------~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~----------------  281 (448)
                      ...|+.|+|+|.....         ...+|+.|+|+|+++        ...|+.|+|.|.+...                
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~--------~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  237 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII--------KNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQ  237 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee--------cccccCCCCceEEEEEEEEEEEECCCCCCCCE
Confidence            4679999999965311         245899999999876        5779999999855320                


Q ss_pred             --------ecc---------------------------------------ccCCCeEEec-ceEEEEEecCCCCCCceeE
Q 013163          282 --------WCK---------------------------------------SCKGARVVKG-SKSVKLDIMPGVDNNETLK  313 (448)
Q Consensus       282 --------~C~---------------------------------------~C~G~g~v~~-~k~l~V~Ip~G~~~G~~i~  313 (448)
                              ...                                       .|.+...+.. ...++|.||+|+++|++++
T Consensus       238 i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~r  317 (372)
T PRK14296        238 IKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELII  317 (372)
T ss_pred             EEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEE
Confidence                    000                                       0000001110 0047788999999999999


Q ss_pred             EeccCCCCC-CCCCCccEEEEEEEEecccccccCcc
Q 013163          314 VFRSGGADP-DGNQPGDLYVTIKVREDPVFRREGAN  348 (448)
Q Consensus       314 ~~g~G~~~~-~g~~~GDL~v~i~v~~h~~f~R~G~D  348 (448)
                      |+|+|.+.. .++..|||||+|+|.-++.+..+...
T Consensus       318 i~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~  353 (372)
T PRK14296        318 INNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKE  353 (372)
T ss_pred             EcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence            999999743 33457999999999977765544433

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.10  E-value=1.2e-10  Score=119.60  Aligned_cols=53  Identities=17%  Similarity=0.295  Sum_probs=45.9

Q ss_pred             EEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceE
Q 013163          298 VKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIH  350 (448)
Q Consensus       298 l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~  350 (448)
                      .+|.||+|+++|++++|+|+|.+.+.+..+|||||+|+|+.++.+..+...|+
T Consensus       290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll  342 (371)
T PRK14292        290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREAL  342 (371)
T ss_pred             EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence            46889999999999999999998876667899999999999988877665543

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.10  E-value=2.6e-10  Score=117.30  Aligned_cols=45  Identities=27%  Similarity=0.423  Sum_probs=40.0

Q ss_pred             eEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecc
Q 013163          296 KSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDP  340 (448)
Q Consensus       296 k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~  340 (448)
                      +.++|.||+|+++|++++|+|+|.+.+.+..+|||||+|+|.-+.
T Consensus       302 ~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~  346 (382)
T PRK14291        302 KKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK  346 (382)
T ss_pred             CEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence            368999999999999999999999877656789999999999664

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.05  E-value=3.4e-10  Score=117.44  Aligned_cols=115  Identities=23%  Similarity=0.401  Sum_probs=78.7

Q ss_pred             eeccCCCCCCCCCCC-----C----CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccc----
Q 013163          226 TELPCEACGGEGVPP-----G----VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKS----  285 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~-----~----~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~----  285 (448)
                      ....|+.|+|+|...     +    ....+|+.|+|+|.++.      ...+|..|+|.|.+..       .+-..    
T Consensus       165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~  238 (421)
T PTZ00037        165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP------ESKKCKNCSGKGVKKTRKILEVNIDKGVPNQH  238 (421)
T ss_pred             CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc------ccccCCcCCCcceeeeeeEEEEeeCCCCCCCc
Confidence            456899999999631     1    12458999999998752      2468999999996532       11111    


Q ss_pred             --------------------------------------------------cCCCeEEe--cceEEEEEecCC--CCCCce
Q 013163          286 --------------------------------------------------CKGARVVK--GSKSVKLDIMPG--VDNNET  311 (448)
Q Consensus       286 --------------------------------------------------C~G~g~v~--~~k~l~V~Ip~G--~~~G~~  311 (448)
                                                                        |.+...+.  ..+.++|+||||  +++|++
T Consensus       239 ~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~  318 (421)
T PTZ00037        239 KITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDI  318 (421)
T ss_pred             EEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcE
Confidence                                                              11111111  122688889999  999999


Q ss_pred             eEEeccCCCCCCC-CCCccEEEEEEEEec--ccccccC
Q 013163          312 LKVFRSGGADPDG-NQPGDLYVTIKVRED--PVFRREG  346 (448)
Q Consensus       312 i~~~g~G~~~~~g-~~~GDL~v~i~v~~h--~~f~R~G  346 (448)
                      ++|+|+|.+...+ +..|||||+|+|.-+  ..+..+.
T Consensus       319 ~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~q  356 (421)
T PTZ00037        319 KVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEE  356 (421)
T ss_pred             EEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHH
Confidence            9999999986543 467999999999976  5554443

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1e-09  Score=99.66  Aligned_cols=67  Identities=36%  Similarity=0.545  Sum_probs=60.7

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      -.-++|++|.|.++.+.++||+.||+|++..|||+|++| +.|...|..|.+||..|-|+..|..-+.
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            356899999999999999999999999999999999998 6699999999999999999987765543

>PRK14299 chaperone protein DnaJ; Provisional

Probab=98.91  E-value=3.9e-09  Score=104.81  Aligned_cols=74  Identities=24%  Similarity=0.441  Sum_probs=65.6

Q ss_pred             ccccCcceEEEEEeCHHHHhcCCeeeeecCCC-cEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCCCC
Q 013163          342 FRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLT  420 (448)
Q Consensus       342 f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG-~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~ls  420 (448)
                      +.|+|.||++.+.|||.||++|+++.| +++| .+.|+||||+++|++++++|+|++.      |||||+|+|+-++.+.
T Consensus       125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~  197 (291)
T PRK14299        125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFR  197 (291)
T ss_pred             CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCCcCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeE
Confidence            357899999999999999999999998 6787 5789999999999999999999973      9999999999777665


Q ss_pred             HH
Q 013163          421 QR  422 (448)
Q Consensus       421 ~~  422 (448)
                      .+
T Consensus       198 R~  199 (291)
T PRK14299        198 LE  199 (291)
T ss_pred             EE
Confidence            33

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.89  E-value=2.3e-09  Score=98.03  Aligned_cols=65  Identities=25%  Similarity=0.349  Sum_probs=57.2

Q ss_pred             cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163           89 RDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        89 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      .|||++||+++.  .+..+++++||+|.+++|||+....++     +.+.-..||+||.+|+||-+|+.|-.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            589999999996  899999999999999999999765433     45567889999999999999999964

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.87  E-value=2.2e-09  Score=96.85  Aligned_cols=54  Identities=24%  Similarity=0.370  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHhhhcccccccccccc
Q 013163          101 ATASEIKKAYYGLAKKLHPDTNKDDP-----EAEKKFQEVSKAYEVLKDDEKRSVYDQV  154 (448)
Q Consensus       101 a~~~eIk~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~yd~~  154 (448)
                      .+..+|+++||+|+++||||+.....     .+.+.|..|++||++|+||.+|+.|+..
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~   61 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS   61 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence            47889999999999999999854432     2678999999999999999999999864

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=98.74  E-value=2e-08  Score=84.63  Aligned_cols=60  Identities=32%  Similarity=0.769  Sum_probs=50.4

Q ss_pred             eeccCCCCCCCCCCCCCccccCcCCCCCCceEEee-cceeeeEecccCCceeEEEeeeccccCCCeEEec
Q 013163          226 TELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHS-GFMSINQTCRQCGGTGHIITNWCKSCKGARVVKG  294 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~-g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  294 (448)
                      ..+.|..|+|+|.      .+|+.|+|+|++..+. +.++++.+|+.|+|+|+.   .|+.|+|.+.+..
T Consensus        40 ~~v~C~~C~GsG~------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~  100 (111)
T PLN03165         40 NTQPCFPCSGTGA------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR  100 (111)
T ss_pred             cCCCCCCCCCCCC------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence            3578999999997      3899999999987655 346778999999999975   4999999987653

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=98.73  E-value=3.7e-08  Score=98.60  Aligned_cols=74  Identities=20%  Similarity=0.435  Sum_probs=62.0

Q ss_pred             ccCcceEEEEEeCHHHHhcCCeeee----ecCC--C--------cEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEE
Q 013163          344 REGANIHVDSVLSVTQAILGGTIQV----PTLT--G--------DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYV  409 (448)
Q Consensus       344 R~G~DL~~~~~Isl~eAllG~~~~v----~tld--G--------~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V  409 (448)
                      ++|.||++.+.|||.||+.|+...|    ++++  |        .+.|.||+|+++|++++++|+|+|..++..+|||||
T Consensus       115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v  194 (306)
T PRK10266        115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWL  194 (306)
T ss_pred             CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEE
Confidence            4688999999999999999995443    5554  3        357889999999999999999999765567899999


Q ss_pred             EEEEECCCC
Q 013163          410 HFNVSIPTN  418 (448)
Q Consensus       410 ~~~V~~P~~  418 (448)
                      +|+|. |..
T Consensus       195 ~i~v~-ph~  202 (306)
T PRK10266        195 VIHIA-PHP  202 (306)
T ss_pred             EEEEc-CCC
Confidence            99999 643

>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress

Probab=98.62  E-value=2.5e-08  Score=79.99  Aligned_cols=50  Identities=28%  Similarity=0.507  Sum_probs=38.8

Q ss_pred             ceEEEEEecCCCCCCceeEEeccCCCCCCCC-CCccEEEEEEEEecccccc
Q 013163          295 SKSVKLDIMPGVDNNETLKVFRSGGADPDGN-QPGDLYVTIKVREDPVFRR  344 (448)
Q Consensus       295 ~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~-~~GDL~v~i~v~~h~~f~R  344 (448)
                      .+.++|.||+|+++|++++++|+|.+...+. ..|||+|+++|.-+..+..
T Consensus        26 g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~   76 (81)
T PF01556_consen   26 GKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP   76 (81)
T ss_dssp             S-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred             CCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence            4678899999999999999999999776555 8999999999997766543

The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.9e-08  Score=94.25  Aligned_cols=68  Identities=34%  Similarity=0.455  Sum_probs=58.6

Q ss_pred             ccCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHhhhccccccccccccc
Q 013163           88 ARDYYDVLGVNK---NATASEIKKAYYGLAKKLHPDTNK--DDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVG  155 (448)
Q Consensus        88 ~~d~y~iLgv~~---~a~~~eIk~ayr~la~~~HPD~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g  155 (448)
                      ..|+|.+|||+.   .|++.+|.+|.++...+||||+..  ++....+.|+.|++||++|+|+.+|.+||..-
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d  114 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND  114 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence            368999999997   689999999999999999999862  22335678999999999999999999999743

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=5.4e-07  Score=98.61  Aligned_cols=56  Identities=41%  Similarity=0.707  Sum_probs=47.9

Q ss_pred             CCccCchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcc
Q 013163           86 MSARDYYDVLGVNKN----ATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD  144 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~----a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d  144 (448)
                      +..-+.|+||.|+-+    -..+.||++|++||.+||||||   ||..++|..+++|||.|+.
T Consensus      1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHHH
Confidence            445678999999863    2347899999999999999998   5778899999999999983

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=2.5e-06  Score=79.52  Aligned_cols=55  Identities=31%  Similarity=0.695  Sum_probs=48.9

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHh-hhcc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE-VLKD  144 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~-~L~d  144 (448)
                      +.+|.+|||..+|+.+|++.||.+||+++|||...+ ....++|.+|.+||. ||+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999999999999764 334568999999998 8864

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=98.07  E-value=3.3e-06  Score=77.82  Aligned_cols=49  Identities=27%  Similarity=0.498  Sum_probs=43.7

Q ss_pred             eEecccCCceeEEEe--eeccccCCCeEEecceEEEEEecCCCCCCceeEEe
Q 013163          266 NQTCRQCGGTGHIIT--NWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF  315 (448)
Q Consensus       266 ~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~  315 (448)
                      +.+|+.|+|+|++++  .+|+.|+|.|.++.++.+.+.+ .|+++|++|++.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~  149 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK  149 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence            567888888888887  6899999999999999999999 999999999864

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=1.3e-05  Score=80.06  Aligned_cols=105  Identities=29%  Similarity=0.541  Sum_probs=75.7

Q ss_pred             cCCCCCCCCCCC-------C---CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe--------e---------
Q 013163          229 PCEACGGEGVPP-------G---VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT--------N---------  281 (448)
Q Consensus       229 ~C~~C~GsG~~~-------~---~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--------~---------  281 (448)
                      .|..|.|+|...       +   .....|..|+|+|..+      .....|+.|.|++.+..        .         
T Consensus       145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~------~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki  218 (337)
T KOG0712|consen  145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETI------SLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKI  218 (337)
T ss_pred             CCCCCCCCCceeEEEeccccccccceeEeccCCCccccc------cccccCcccccchhhhhhheeeccccCCCccccee
Confidence            699999998762       1   1245789999998753      34678888888873321        0         


Q ss_pred             ------------------------------ec--------------cccCCCeEEe--cceEEEEEecCC--CCCCceeE
Q 013163          282 ------------------------------WC--------------KSCKGARVVK--GSKSVKLDIMPG--VDNNETLK  313 (448)
Q Consensus       282 ------------------------------~C--------------~~C~G~g~v~--~~k~l~V~Ip~G--~~~G~~i~  313 (448)
                                                    ++              .-|.....+.  +.+.+++.++||  +.+|++++
T Consensus       219 ~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~  298 (337)
T KOG0712|consen  219 TFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKR  298 (337)
T ss_pred             eeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEe
Confidence                                          00              2333333332  456899999999  99999999


Q ss_pred             EeccCCCCCCCCCCccEEEEEEEEecc
Q 013163          314 VFRSGGADPDGNQPGDLYVTIKVREDP  340 (448)
Q Consensus       314 ~~g~G~~~~~g~~~GDL~v~i~v~~h~  340 (448)
                      +.|+|++..... .|||||.++|+-++
T Consensus       299 v~~~gmp~~~~~-~g~lyi~~~v~fp~  324 (337)
T KOG0712|consen  299 VEGEGMPIFRNP-KGDLYIKFEVKFPK  324 (337)
T ss_pred             ecCCCcccccCC-CCcEEEEEEEEcCC
Confidence            999999987644 99999999999665

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00011  Score=60.81  Aligned_cols=57  Identities=26%  Similarity=0.360  Sum_probs=48.1

Q ss_pred             CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccc
Q 013163           85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD  145 (448)
Q Consensus        85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~  145 (448)
                      .|..+..-.||||+++++.+.||+|+|++....|||+..+ |=.   =.+|++|+++|...
T Consensus        52 kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-PYl---AsKINEAKdlLe~~  108 (112)
T KOG0723|consen   52 KMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-PYL---ASKINEAKDLLEGT  108 (112)
T ss_pred             ccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-HHH---HHHHHHHHHHHhcc
Confidence            3666788899999999999999999999999999999874 432   23699999999754

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=97.54  E-value=0.00029  Score=76.63  Aligned_cols=70  Identities=50%  Similarity=0.888  Sum_probs=66.1

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAF  159 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  159 (448)
                      +|||+||||+++|+.++||+|||+||++||||++++ +.+.++|++|++||++|+||.+|+.||.||..+.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            589999999999999999999999999999999975 7888999999999999999999999999987654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.53  E-value=5.4e-05  Score=79.33  Aligned_cols=64  Identities=31%  Similarity=0.716  Sum_probs=35.6

Q ss_pred             cCCCCCCCCCCCCCccccCcCCCCCCceEEee-------------cceeeeEecccCCceeEEE-eeeccccCCCeEEe
Q 013163          229 PCEACGGEGVPPGVKPEKCRRCKGSGMESIHS-------------GFMSINQTCRQCGGTGHII-TNWCKSCKGARVVK  293 (448)
Q Consensus       229 ~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~-------------g~~~~~~~C~~C~G~G~~~-~~~C~~C~G~g~v~  293 (448)
                      .|+.|+|+|-..- ..+.|+.|+|+|..-...             +......+|+.|.|+|++. ...|..|.|.+.+.
T Consensus         4 ~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~   81 (715)
T COG1107           4 KCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL   81 (715)
T ss_pred             cccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence            5777777664322 234577777777652110             1223355677777777654 35666666665443

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.00067  Score=66.38  Aligned_cols=42  Identities=26%  Similarity=0.756  Sum_probs=29.0

Q ss_pred             cCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEE
Q 013163          246 KCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLD  301 (448)
Q Consensus       246 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~  301 (448)
                      .|..|+|+|.           ..|++|.|.|.   .+|.+|.|.|.+..-..+.|.
T Consensus       236 ~C~~C~G~G~-----------~~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~  277 (406)
T KOG2813|consen  236 LCYMCHGRGI-----------KECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVY  277 (406)
T ss_pred             hhhhccCCCc-----------ccCCcccCCCC---cccccccCccceeeeEEEEEE
Confidence            4666666663           46777777775   579999999877766555554

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=96.88  E-value=0.001  Score=51.13  Aligned_cols=42  Identities=31%  Similarity=0.843  Sum_probs=29.3

Q ss_pred             CcCCCCCCceEEeecceeeeEecccCCceeEEEe------------eeccccCCCeEEe
Q 013163          247 CRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT------------NWCKSCKGARVVK  293 (448)
Q Consensus       247 C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~  293 (448)
                      |+.|+|+|...     -....+|+.|+|+|.+..            ..|..|+|.|.+.
T Consensus         1 C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKP-----GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-S-----TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCC-----CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            88999999731     123569999999998753            6899999998875

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0015  Score=57.83  Aligned_cols=66  Identities=32%  Similarity=0.568  Sum_probs=52.8

Q ss_pred             ccCchhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC----C-hHHHHHHHHHHHHHhhhccccccccccc
Q 013163           88 ARDYYDVLGVNK--NATASEIKKAYYGLAKKLHPDTNKD----D-PEAEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        88 ~~d~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~----~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      ..+||.++|...  ...++-++.-|--..++.|||+...    + ..|.+.-.++++||..|.||-+|+.|-.
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            468999997554  4566667779999999999998321    1 2477889999999999999999999963

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.57  E-value=0.0014  Score=55.54  Aligned_cols=41  Identities=37%  Similarity=0.797  Sum_probs=29.9

Q ss_pred             cCCCCCCCCCCC----C--CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163          229 PCEACGGEGVPP----G--VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT  280 (448)
Q Consensus       229 ~C~~C~GsG~~~----~--~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  280 (448)
                      .|+.|+|+|...    +  ....+|+.|+|+|.           ..|..|.|+|.+.+
T Consensus        54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk-----------~~C~~C~G~G~~~~  100 (111)
T PLN03165         54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS-----------LTCTTCQGSGIQPR  100 (111)
T ss_pred             CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce-----------eeCCCCCCCEEEee
Confidence            799999988652    1  12457999999985           24999999987754

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.48  E-value=0.0025  Score=67.26  Aligned_cols=47  Identities=36%  Similarity=0.931  Sum_probs=34.5

Q ss_pred             eccCCCCCCCCCCCCCc------------------cccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163          227 ELPCEACGGEGVPPGVK------------------PEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT  280 (448)
Q Consensus       227 ~~~C~~C~GsG~~~~~~------------------~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  280 (448)
                      ...|+.|+|+|......                  -.+|+.|+|+|.+.       .-.+|+.|+|+|++..
T Consensus        18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~-------v~~~c~~c~G~gkv~~   82 (715)
T COG1107          18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT-------VYDTCPECGGTGKVLT   82 (715)
T ss_pred             eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE-------EEeecccCCCceeEEe
Confidence            35699999998652111                  23799999999864       3578999999998864

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.0028  Score=58.25  Aligned_cols=54  Identities=39%  Similarity=0.548  Sum_probs=46.9

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CC-----hHHHHHHHHHHHHHhhh
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNK--DD-----PEAEKKFQEVSKAYEVL  142 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~--~~-----~~a~~~f~~i~~Ay~~L  142 (448)
                      .+.|.+|++...++..+|+++||++....|||+-.  ..     ..+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999999999999999999732  12     24888999999999853

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=95.52  E-value=0.0087  Score=55.36  Aligned_cols=13  Identities=38%  Similarity=1.012  Sum_probs=6.8

Q ss_pred             EecccCCceeEEE
Q 013163          267 QTCRQCGGTGHII  279 (448)
Q Consensus       267 ~~C~~C~G~G~~~  279 (448)
                      .+|+.|+|+|++.
T Consensus       116 ~~C~~C~G~G~v~  128 (186)
T TIGR02642       116 RECDTCAGTGRFR  128 (186)
T ss_pred             CCCCCCCCccEEe
Confidence            3455555555543

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.008  Score=55.24  Aligned_cols=63  Identities=29%  Similarity=0.388  Sum_probs=48.6

Q ss_pred             chhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163           91 YYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        91 ~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      +...+|..+.+  ..+.++..|+.+.+.||||+....++     +.+.+..++.||.+|.||-+|+.|=.
T Consensus         3 ~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076           3 GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             cccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            34444555443  33668999999999999999765433     45689999999999999999999964

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=94.69  E-value=0.032  Score=58.79  Aligned_cols=44  Identities=34%  Similarity=0.477  Sum_probs=33.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCCCh---H----HHHHHHHHHHHHhh
Q 013163           98 NKNATASEIKKAYYGLAKKLHPDTNKDDP---E----AEKKFQEVSKAYEV  141 (448)
Q Consensus        98 ~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~----a~~~f~~i~~Ay~~  141 (448)
                      ..=.+.++||+||||..+..||||.+..+   +    |++.|..+++||..
T Consensus       397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  397 TDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             hhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            33458899999999999999999977652   2    55666666666653

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.02  Score=56.31  Aligned_cols=59  Identities=27%  Similarity=0.671  Sum_probs=39.7

Q ss_pred             eccCCCCCCCCCCC--CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEe
Q 013163          227 ELPCEACGGEGVPP--GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVK  293 (448)
Q Consensus       227 ~~~C~~C~GsG~~~--~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~  293 (448)
                      ...|+.|+|.|...  -..+..|..|-|.  .  .++ .-....|..|+|+|.   .+|.+|+|.|.+.
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~--~--~~k-~gt~~~C~~C~G~G~---~~C~tC~grG~k~  258 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGV--P--PPK-IGTHDLCYMCHGRGI---KECHTCKGRGKKP  258 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccCC--C--CCC-CCccchhhhccCCCc---ccCCcccCCCCcc
Confidence            56899999988532  2346678888771  1  111 122467999999996   4699999887543

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=91.41  E-value=0.089  Score=52.31  Aligned_cols=77  Identities=17%  Similarity=0.352  Sum_probs=45.8

Q ss_pred             eeeeeeeccCCCCCCCCCC-----CCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecc
Q 013163          221 TVTFQTELPCEACGGEGVP-----PGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGS  295 (448)
Q Consensus       221 ~i~~~~~~~C~~C~GsG~~-----~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~  295 (448)
                      .........|..|.|+|..     ..-...+|..|.|.|.+.        ...|..|.|.|.+...+=..-.....+...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~--------~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~  246 (288)
T KOG0715|consen  175 AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVL--------RDNCQACSGAGQVRRAKDIMIVLPAGVRSA  246 (288)
T ss_pred             cccccccccchhhhCcccccccccCCcceeecccccccceec--------cchHHHhhcchhhhhheeEEeecCcccccc
Confidence            3344567899999999922     111122799999999876        344999999995543222122222333344


Q ss_pred             eEEEEEecCC
Q 013163          296 KSVKLDIMPG  305 (448)
Q Consensus       296 k~l~V~Ip~G  305 (448)
                      .++++..+..
T Consensus       247 ~~l~~~~~~~  256 (288)
T KOG0715|consen  247 DTLRFAGHGN  256 (288)
T ss_pred             cEEEEecCCc
Confidence            4445444433

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=89.52  E-value=0.75  Score=40.02  Aligned_cols=57  Identities=25%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE  146 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~  146 (448)
                      ++......||+|++..+.++|.+.|.+|-...+|++..+    .=.=.+|..|.|.|..+.
T Consensus        55 Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   55 MTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             --HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence            445678999999999999999999999999999998753    112245778888887544

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.34  E-value=0.4  Score=46.66  Aligned_cols=51  Identities=27%  Similarity=0.584  Sum_probs=33.4

Q ss_pred             ccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccC
Q 013163          228 LPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCK  287 (448)
Q Consensus       228 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  287 (448)
                      ..|..|.|.+.      .+|..|+|+-+++.+-...-.-.+|..|+=.|-+   +|+.|.
T Consensus       230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv---rCp~Cs  280 (281)
T KOG2824|consen  230 GVCESCGGARF------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV---RCPVCS  280 (281)
T ss_pred             CcCCCcCCcce------EecCCCCCceeeeeeccCCCcEEECcccCCCCce---eCCccC
Confidence            56777876653      5788888887776532223334678888877765   366664

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=84.84  E-value=0.53  Score=54.07  Aligned_cols=26  Identities=38%  Similarity=0.796  Sum_probs=15.9

Q ss_pred             cccCCceeEEE---------eeeccccCCCeEEec
Q 013163          269 CRQCGGTGHII---------TNWCKSCKGARVVKG  294 (448)
Q Consensus       269 C~~C~G~G~~~---------~~~C~~C~G~g~v~~  294 (448)
                      |+.|.|.|.+.         ..+|..|+|.++-.+
T Consensus       739 C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e  773 (924)
T TIGR00630       739 CEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE  773 (924)
T ss_pred             CCCCccceEEEEEccCCCCcccCCCCcCCceeChH
Confidence            66666666554         256777777766544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.90  E-value=1.7  Score=42.45  Aligned_cols=38  Identities=24%  Similarity=0.684  Sum_probs=32.0

Q ss_pred             ccCcCCCCCCceEEeecceeeeEecccCCceeEEEe--------eeccccCCCeEEe
Q 013163          245 EKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT--------NWCKSCKGARVVK  293 (448)
Q Consensus       245 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--------~~C~~C~G~g~v~  293 (448)
                      ..|..|+|.+++           +|..|+|+-++..        .+|..|+-.|.++
T Consensus       230 ~~C~~CGg~rFl-----------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr  275 (281)
T KOG2824|consen  230 GVCESCGGARFL-----------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR  275 (281)
T ss_pred             CcCCCcCCcceE-----------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence            479999998864           6999999998876        6899999888765

>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1

Probab=80.82  E-value=9.8  Score=34.48  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             CeeeeecCCCcEEEEeCCCCCCCcEEEEcC
Q 013163          364 GTIQVPTLTGDVVLKVRPGTQPGQKVVLKN  393 (448)
Q Consensus       364 ~~~~v~tldG~~~l~i~~g~~~g~~~~l~g  393 (448)
                      .++.||-|    .+.||||++-|..-.|.|
T Consensus        75 a~i~IPEl----~~ei~pg~~~g~itTVEG  100 (160)
T smart00709       75 ATISIPEL----DLEIPPGPLGGFITTVEG  100 (160)
T ss_pred             cEEEeeee----eEEecCCCCCcEEEehHH
Confidence            46777765    488999998888888854

Also present in archaeal proteins.

>TIGR00310 ZPR1_znf ZPR1 zinc finger domain

Probab=80.68  E-value=14  Score=34.56  Aligned_cols=26  Identities=38%  Similarity=0.621  Sum_probs=19.6

Q ss_pred             CeeeeecCCCcEEEEeCCC-CCCCcEEEEcC
Q 013163          364 GTIQVPTLTGDVVLKVRPG-TQPGQKVVLKN  393 (448)
Q Consensus       364 ~~~~v~tldG~~~l~i~~g-~~~g~~~~l~g  393 (448)
                      .++.||-|    .+.|||| ++.|..-.|.|
T Consensus        74 ati~IPEl----~lei~pg~~~~G~iTTVEG  100 (192)
T TIGR00310        74 ATIRIPEL----GLDIEPGPTSGGFITNLEG  100 (192)
T ss_pred             cEEEccce----EEEECCCccCCceEEeeHh
Confidence            46677765    4889999 68898888844

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	448
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-19
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		5e-19
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		9e-19
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-18
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-15
1nlt_A	248	The Crystal Structure Of Hsp40 Ydj1 Length = 248		3e-15
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		9e-15
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		9e-15
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-14
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		4e-14
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		6e-14
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		8e-14
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-13
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		6e-13
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		8e-13
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-12
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		2e-12
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-12
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		3e-11
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		4e-11
3i38_A	109	Structure Of A Putative Chaperone Protein Dnaj From		2e-09
2ctt_A	104	Solution Structure Of Zinc Finger Domain From Human		5e-09
2qsa_A	109	Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2		3e-08
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		5e-08
2q2g_A	180	Crystal Structure Of Dimerization Domain Of Hsp40 F		8e-08
2qld_A	183	Human Hsp40 Hdj1 Length = 183		1e-06
3agz_A	190	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		1e-06
3agx_A	181	Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi		1e-06
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		4e-06
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		5e-06
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		6e-06
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		3e-05
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		4e-05
1exk_A	79	Solution Structure Of The Cysteine-Rich Domain Of T		8e-04

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 57/72 (79%)
Query: 84  ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143
           +S S+ DYY +LGV +NA+  EIKKAYY LAKK HPDTNKDDP+A++KF ++++AYEVL 
Sbjct: 2   SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61
Query: 144 DDEKRSVYDQVG 155
           D+ KR  YD  G
Sbjct: 62  DEVKRKQYDAYG 73

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 87  SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
           + +DYY++LGV+K A   EI+KAY  LA K HPD N+ D EAE KF+E+ +AYEVL D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 147 KRSVYDQVGHEAF 159
           KR+ YDQ GH AF
Sbjct: 61  KRAAYDQYGHAAF 73

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 87  SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
           + +DYY++LGV+K A   EI+KAY  LA K HPD N+ D EAE KF+E+ +AYEVL D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 147 KRSVYDQVGHEAF 159
           KR+ YDQ GH AF
Sbjct: 61  KRAAYDQYGHAAF 73

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 87  SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
           + +DYY++LGV+K A   EI+KAY  LA K HPD N+ D EAE KF+E+ +AYEVL D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 147 KRSVYDQVGHEAF 159
           KR+ YDQ GH AF
Sbjct: 61  KRAAYDQYGHAAF 73

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 91  YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
           YYD+LGV K+A+  +IKKA++ LA K HPD NK  P+AE KF+E+++AYE L D  +R  
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKE 67
Query: 151 YDQVGHEAF 159
           YD +GH AF
Sbjct: 68  YDTLGHSAF 76

>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 11/233 (4%)
Query: 195 RNRMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSG 254
           R    G+D+K  +  S  E  +G T  +    ++ C+ C             C  C G G
Sbjct: 6   RGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKK-CTSCNGQG 64
Query: 255 MESIHSGFMSINQ----TCRQCGGTGHII--TNWCKSCKGARVVKGSKSVKLDIMPGVDN 308
           ++ +      + Q     C  C GTG II   + CKSC G +V    K +++ + PG+ +
Sbjct: 65  IKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKD 124
Query: 309 NETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQV 368
            + + VF+          PGD+   +  R    F+R+G ++  ++ + +  AI GG   +
Sbjct: 125 GQRI-VFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFAL 183
Query: 369 PTLTGD-VVLKVRPG--TQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTN 418
             ++GD + + + PG    PG + V++ KG+       +G+  + F +  P N
Sbjct: 184 EHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPEN 236

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 59/79 (74%), Gaps = 3/79 (3%)
Query: 82  GTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYE 140
           G++ M+  +YY+VLGV  +A+  +IKKAY  LA + HPD N D+  EAEKKF+ VS+AYE
Sbjct: 4   GSSGMA--NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYE 61
Query: 141 VLKDDEKRSVYDQVGHEAF 159
           VL D +KRS+YD+ G +++
Sbjct: 62  VLSDSKKRSLYDRAGCDSW 80

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 85  SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144
           S S    Y VLG++KNAT+ +IKK+Y  LA K HPD N D+PEA  KF+E++ A+ +L D
Sbjct: 13  STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD 72
Query: 145 DEKRSVYDQVG 155
             KR++YD+ G
Sbjct: 73  ATKRNIYDKYG 83

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 296 KSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVL 355
           K++ + I  GV + + +++   G    +G   GDL++ I +   P+F   G N+ +   L
Sbjct: 181 KTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPL 240
Query: 356 SVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSI 415
           +  +A LG  + VPTL   ++L V PG+Q GQ++ +K KG+ ++     GD +    + +
Sbjct: 241 APWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSKT--HTGDLFAVIKIVM 298
Query: 416 PTNLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
           PT   ++ REL ++ A  E   +D R   G +
Sbjct: 299 PTKPDEKARELWQQLAAAE-ASFDPRKTWGKA 329

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
Query: 85  SMSARDY--YDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVL 142
           S+SA D+  Y VLGV++ A+ ++IKKAY  LA++ HPD NK DP AE +F ++SKAYE+L
Sbjct: 11  SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEIL 69
Query: 143 KDDEKRSVYDQVG 155
            ++EKR+ YD  G
Sbjct: 70  SNEEKRTNYDHYG 82

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 91  YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
           YYDVLGV  +A+ +E+KKAY  +A K HPD N   P+  ++F+++S+AYEVL D++KR +
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDEKKRQI 66
Query: 151 YDQVGHE 157
           YDQ G E
Sbjct: 67  YDQGGEE 73

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 91  YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE-AEKKFQEVSKAYEVLKDDEKRS 149
           YY++L V ++A+A +IKKAY   A + HPD N D+ E AEKKF+EV++AYEVL D  KR 
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 150 VYDQVGHEAF 159
           +YD+ G E  
Sbjct: 64  IYDRYGREGL 73

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 91  YYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV 150
           YYDVLGV  NAT  E+KKAY  LA K HPD N   P   +KF+++S+AYEVL D +KR +
Sbjct: 8   YYDVLGVKPNATQEELKKAYRKLALKYHPDKN---PNEGEKFKQISQAYEVLSDAKKREL 64
Query: 151 YDQVGHE 157
           YD+ G +
Sbjct: 65  YDKGGEQ 71

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 83  TASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEV 141
           + S    DYY+VL V + A++  IKKAY  LA K HPD N ++  EAE++F++V++AYEV
Sbjct: 3   SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEV 62
Query: 142 LKDDEKRSVYDQVG 155
           L D +KR +YD+ G
Sbjct: 63  LSDAKKRDIYDRYG 76

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 88  ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEK 147
            +DYY  LG+ + A+  EIK+AY   A + HPD NK +P AE+KF+E+++AY+VL D  K
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60
Query: 148 RSVYDQVGHEAF 159
           R ++D+ G E  
Sbjct: 61  REIFDRYGEEGL 72

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 51/71 (71%)
Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           +++Y +LGV+K A++ EI++A+  LA KLHPD N ++P A   F ++++AYEVLKD++ R
Sbjct: 21  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 149 SVYDQVGHEAF 159
             YD+ G +  
Sbjct: 81  KKYDKYGEKGL 91

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 51/71 (71%)
Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           +++Y +LGV+K A++ EI++A+  LA KLHPD N ++P A   F ++++AYEVLKD++ R
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 149 SVYDQVGHEAF 159
             YD+ G +  
Sbjct: 62  KKYDKYGEKGL 72

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           +DYY ++GV        IK AY  LA+K HPD +K+ P+AE +F+EV++A+EVL D+++R
Sbjct: 5   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRR 63
Query: 149 SVYDQV 154
           + YDQ+
Sbjct: 64  AEYDQM 69

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 84  ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143
           +S S+ DYY++LGV++ A+  ++KKAY  LA K HPD N   P A + F+ +  AY VL 
Sbjct: 2   SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLS 60
Query: 144 DDEKRSVYDQVG 155
           + EKR  YDQ G
Sbjct: 61  NPEKRKQYDQFG 72

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 92  YDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVY 151
           YD+LGV+ +A   E+KK Y   A K HPD    D E   KF+E+S+A+E+L D +KR +Y
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDPQKREIY 67
Query: 152 DQVGHEA 158
           DQ G EA
Sbjct: 68  DQYGLEA 74

>pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 Length = 109

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 340 PVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTR 399
           P+F   G N+ +   L+  +A LG  + VPTL   ++L V PG+Q GQ++ +K KG+ ++
Sbjct: 5   PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK 64
Query: 400 NSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
                GD +    +  PT   ++ REL ++ A  E   +D R   G +
Sbjct: 65  T--HTGDLFAVIKIVXPTKPDEKARELWQQLAAAE-ASFDPRKTWGKA 109

>pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 Length = 104

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 45/94 (47%)
Query: 200 GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGMESIH 259
           G      +EL+F +A +G  K  T      CE C             C  C GSGME+I+
Sbjct: 1   GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETIN 60
Query: 260 SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVK 293
           +G   +  TCR+CGG G II + C  C+GA   K
Sbjct: 61  TGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAK 94

>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2 Precursor From C.Elegans Length = 109

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 4/65 (6%)
Query: 92  YDVLGVNKNA-TASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQEVSKAYEVLKDDEK 147
           YDVL VN+      ++ KAY  LA+K HPD  K+  E   AE++F+ ++ AYE LKDDE 
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 148 RSVYD 152
           ++ YD
Sbjct: 78  KTNYD 82

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 38/73 (52%)
Query: 81  HGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
            G  S S    YD+LGV   AT ++IK AYY      HPD N    EA ++F  +S+AY 
Sbjct: 9   QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYV 68
Query: 141 VLKDDEKRSVYDQ 153
           VL     R  YD+
Sbjct: 69  VLGSATLRRKYDR 81

>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 298 VKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSV 357
           V+++I PG  +   L     G  +  G  PGDL + I+ +  P F R+  ++     + +
Sbjct: 44  VEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPL 103
Query: 358 TQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGIKTRNSF-SFGDQYVHFNVSI 415
            +A+ G T  V TL   ++ + ++    P  + ++ N+G   +N     GD  + F++  
Sbjct: 104 VRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICF 163
Query: 416 PTNLTQRQRELIEE 429
           P +LT  Q++LI+E
Sbjct: 164 PKSLTPEQKKLIKE 177

>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG- 373
           F   G     N P D+   +K +   +F+R+G+++   + +S+ +A+ G T+ VPTL G 
Sbjct: 63  FPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 122
Query: 374 --DVVLK--VRPGTQ---PGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
              VV K  +RPG +   PG+ + L       +     GD  + F V  P  + Q  R +
Sbjct: 123 TIPVVFKDVIRPGMRRKVPGEGLPL------PKTPEKRGDLIIEFEVIFPERIPQTSRTV 176
Query: 427 IEE 429
           +E+
Sbjct: 177 LEQ 179

>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG- 373
           F   G     N P D+   +K +   +F+R+G+++   + +S+ +A+ G T+ VPTL G 
Sbjct: 70  FPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 129
Query: 374 --DVVLK--VRPGTQ---PGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
              VV K  +RPG +   PG+ + L       +     GD  + F V  P  + Q  R +
Sbjct: 130 TIPVVFKDVIRPGMRRKVPGEGLPL------PKTPEKRGDLIIEFEVIFPERIPQTSRTV 183
Query: 427 IEE 429
           +E+
Sbjct: 184 LEQ 186

>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 315 FRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG- 373
           F   G     N P D+   +K +   +F+R+G+++   + +S+ +A+ G T+ VPTL G 
Sbjct: 61  FPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGR 120
Query: 374 --DVVLK--VRPGTQ---PGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQREL 426
              VV K  +RPG +   PG+ + L     K       GD  + F V  P  + Q  R +
Sbjct: 121 TIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKR------GDLIIEFEVIFPERIPQTSRTV 174
Query: 427 IEE 429
           +E+
Sbjct: 175 LEQ 177

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 85  SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144
           S    DYY +LG ++ ++  +I   +   A + HPD + ++P+A + FQ++ KA E+L +
Sbjct: 16  SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN 75
Query: 145 DEKRSVYDQ 153
           +E R+ YD 
Sbjct: 76  EESRARYDH 84

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD---DPEAEKKFQEVSKAYEVLKDD 145
           RDYY +LGV +NA   EI KAY  LA + HPD  ++     +AEKKF +++ A EVL D 
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 146 EKRSVYD 152
           E R  +D
Sbjct: 442 EMRKKFD 448

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD---DPEAEKKFQEVSKAYEVLKDD 145
           RDYY +LGV +NA   EI KAY  LA + HPD  ++     +AEKKF +++ A EVL D 
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441
Query: 146 EKRSVYD 152
           E R  +D
Sbjct: 442 EXRKKFD 448

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 80  IHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD------PEAEKKFQ 133
           +     M  +D+Y +LG + +A  S++K+ Y  L    HPD    D       E  +KF 
Sbjct: 1   MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFI 60
Query: 134 EVSKAYEVLKDDEKRSVYD 152
           E+ +A+++L ++E +  YD
Sbjct: 61  EIDQAWKILGNEETKREYD 79

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD------PEAEKKFQEVSKAYEVL 142
           +D+Y +LG + +A  S++K+ Y  L    HPD    D       E  +KF E+ +A+++L
Sbjct: 16  KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 143 KDDEKRSVYD 152
            ++E +  YD
Sbjct: 76  GNEETKKKYD 85

>pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The Escherichia Coli Chaperone Protein Dnaj Length = 79

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 219 TKTVTFQTELPCEACXXXXXXXXXXXXXCRRCKGSGMESIHSGFMSINQTCRQCGGTGHI 278
           TK +   T   C+ C             C  C GSG   +  GF ++ QTC  C G G +
Sbjct: 3   TKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL 62
Query: 279 ITNWCKSCKG 288
           I + C  C G
Sbjct: 63  IKDPCNKCHG 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	448
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-107
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	8e-71
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-45
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-43
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-43
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-42
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-41
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-40
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	1e-40
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-40
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-40
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	4e-40
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-39
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-39
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	5e-39
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	8e-39
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-38
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	5e-38
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	6e-38
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	7e-37
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	3e-36
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-35
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	3e-35
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	5e-34
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-33
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	6e-31
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	7e-30
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-29
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-29
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	8e-29
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	5e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-21
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-20
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	5e-19
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	1e-18
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-16
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	1e-15
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-14
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-14
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-13
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	8e-11
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  319 bits (821), Expect = e-107
 Identities = 94/379 (24%), Positives = 163/379 (43%), Gaps = 65/379 (17%)

Query: 73  NLGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKF 132
           +LG       + +M  +DYY +LGV        IK AY  LA+K HPD +K + +AE KF
Sbjct: 12  DLGTENLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSK-ENDAEAKF 70

Query: 133 QEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNP-FQDIFNMENIFNFR 191
           +++++A+EVLKD+++R+ YDQ+               HE  +    F DIF   ++F  +
Sbjct: 71  KDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIF--SSMFGQQ 128

Query: 192 DIFRNR---MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCR 248
              R R     G D+++ V +   E +   T+T+++    P     G             
Sbjct: 129 AHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNL--PVYNVFGMIESE-------- 178

Query: 249 RCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDN 308
                                                          K++ + I  GV +
Sbjct: 179 ---------------------------------------------TPKTLNVKIPAGVVD 193

Query: 309 NETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQV 368
            + +++   G    +G   GDL++ I +   P+F   G N+ +   L+  +A LG  + V
Sbjct: 194 GQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTV 253

Query: 369 PTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIE 428
           PTL   ++L V PG+Q GQ++ +K KG+ ++     GD +    + +PT   ++ REL +
Sbjct: 254 PTLKESILLTVPPGSQAGQRLRIKGKGLVSKT--HTGDLFAVIKIVMPTKPDEKARELWQ 311

Query: 429 EFAKEERGEYDKRAAAGAS 447
           + A      +D R   G +
Sbjct: 312 QLA-AAEASFDPRKTWGKA 329

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248

 Score =  223 bits (570), Expect = 8e-71
 Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 11/238 (4%)

Query: 200 GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGME--- 256
           G+D+K  +  S  E  +G T  +    ++ C+ C G G   G   +KC  C G G++   
Sbjct: 11  GKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKG-AVKKCTSCNGQGIKFVT 69

Query: 257 -SIHSGFMSINQTCRQCGGTGHII--TNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLK 313
             +          C  C GTG II   + CKSC G +V    K +++ + PG+ + + + 
Sbjct: 70  RQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIV 129

Query: 314 VFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG 373
                   PD   PGD+   +  R    F+R+G ++  ++ + +  AI GG   +  ++G
Sbjct: 130 FKGEADQAPDV-IPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188

Query: 374 -DVVLKVRPG--TQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIE 428
             + + + PG    PG + V++ KG+       +G+  + F +  P N    +  L +
Sbjct: 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK 246

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  152 bits (386), Expect = 2e-45
 Identities = 55/108 (50%), Positives = 69/108 (63%), Gaps = 7/108 (6%)

Query: 87  SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
           + +DYY++LGV+K A   EI+KAY  LA K HPD N+ D EAE KF+E+ +AYEVL D +
Sbjct: 1   AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60

Query: 147 KRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIF 194
           KR+ YDQ GH AF   E  G  G   G G  F DIF   ++F   DIF
Sbjct: 61  KRAAYDQYGHAAF---EQGGMGGGGFGGGADFSDIF--GDVFG--DIF 101

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  146 bits (370), Expect = 2e-43
 Identities = 44/76 (57%), Positives = 57/76 (75%)

Query: 84  ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143
           +S S+ DYY +LGV +NA+  EIKKAYY LAKK HPDTNKDDP+A++KF ++++AYEVL 
Sbjct: 2   SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61

Query: 144 DDEKRSVYDQVGHEAF 159
           D+ KR  YD  G    
Sbjct: 62  DEVKRKQYDAYGSGPS 77

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  146 bits (371), Expect = 2e-43
 Identities = 33/96 (34%), Positives = 42/96 (43%)

Query: 74  LGGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQ 133
             G     G  S S    YD+LGV   AT ++IK AYY      HPD N    EA ++F 
Sbjct: 2   SSGSSGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFT 61

Query: 134 EVSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPG 169
            +S+AY VL     R  YD+        +    GP 
Sbjct: 62  RISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPS 97

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  148 bits (374), Expect = 2e-42
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           +++Y +LGV+K A++ EI++A+  LA KLHPD N ++P A   F ++++AYEVLKD++ R
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 149 SVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNF-RDIFRNRMSGQDVKV-- 205
             YD+ G +        G       +   F    +   I    R  F   ++  ++    
Sbjct: 62  KKYDKYGEKGL-EDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVN 120

Query: 206 ----------AVELSFMEAVQGCTKTVTF 224
                      +  ++ E  +     +  
Sbjct: 121 FYSPGCSHCHDLAPTWREFAKEVDGLLRI 149

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  141 bits (358), Expect = 3e-41
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 8/100 (8%)

Query: 85  SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKD 144
           S S    Y VLG++KNAT+ +IKK+Y  LA K HPD N D+PEA  KF+E++ A+ +L D
Sbjct: 13  STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD 72

Query: 145 DEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNM 184
             KR++YD+ G             G E          F  
Sbjct: 73  ATKRNIYDKYGSLGL---YVAEQFGEEN-----VNTYFVS 104

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  139 bits (352), Expect = 1e-40
 Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 1/89 (1%)

Query: 83  TASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEV 141
           + S    +YY+VLGV  +A+  +IKKAY  LA + HPD N D+  EAEKKF+ VS+AYEV
Sbjct: 3   SGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEV 62

Query: 142 LKDDEKRSVYDQVGHEAFVHQETNGGPGH 170
           L D +KRS+YD+ G +++       GP  
Sbjct: 63  LSDSKKRSLYDRAGCDSWRAGGGASGPSS 91

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  139 bits (353), Expect = 1e-40
 Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE-AEKKFQEVSKAYEVLKDDEK 147
             YY++L V ++A+A +IKKAY   A + HPD N D+ E AEKKF+EV++AYEVL D  K
Sbjct: 2   ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

Query: 148 RSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQ 179
           R +YD+ G E      T       G  G   +
Sbjct: 62  REIYDRYGREGLTGTGTGPSRAEAGSGGPGLE 93

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  138 bits (350), Expect = 2e-40
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 76  GLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEV 135
           G   I  + S    D Y VLGV++ A+ ++IKKAY  LA++ HPD NK DP AE +F ++
Sbjct: 4   GSSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQI 62

Query: 136 SKAYEVLKDDEKRSVYDQVGHEAF 159
           SKAYE+L ++EKR+ YD  G    
Sbjct: 63  SKAYEILSNEEKRTNYDHYGSGPS 86

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  138 bits (350), Expect = 2e-40
 Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 6/92 (6%)

Query: 84  ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143
           +S S+  YYD+LGV K+A+  +IKKA++ LA K HPD NK  P+AE KF+E+++AYE L 
Sbjct: 2   SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLS 60

Query: 144 DDEKRSVYDQVGHEAFVHQETNGGPGHEGGFG 175
           D  +R  YD +GH AF       G G  G   
Sbjct: 61  DANRRKEYDTLGHSAF-----TSGKGQSGPSS 87

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170

 Score =  140 bits (356), Expect = 4e-40
 Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 2/146 (1%)

Query: 285 SCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRR 344
             KG         + + + PG      +     G  +P   +   L   I+ +  P F+R
Sbjct: 25  GRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKR 84

Query: 345 EGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVVLKNKGI-KTRNSF 402
           +G ++     LS  +++LG +  + T+ G  + L      QP Q      +G+   +N  
Sbjct: 85  DGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPS 144

Query: 403 SFGDQYVHFNVSIPTNLTQRQRELIE 428
             G+  V + V  P +L   Q+  I+
Sbjct: 145 QRGNLIVKYKVDYPISLNDAQKRAID 170

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  137 bits (347), Expect = 1e-39
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 75  GGLRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQE 134
            G+ +I    S    DYY +LG ++ ++  +I   +   A + HPD + ++P+A + FQ+
Sbjct: 6   SGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQK 65

Query: 135 VSKAYEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQ 179
           + KA E+L ++E R+ YD            +          +  +
Sbjct: 66  LQKAKEILTNEESRARYDHWRRSQM-----SMPFQQWEALNDSVK 105

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  136 bits (344), Expect = 1e-39
 Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 83  TASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEV 141
           + S    DYY+VL V + A++  IKKAY  LA K HPD N ++  EAE++F++V++AYEV
Sbjct: 3   SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEV 62

Query: 142 LKDDEKRSVYDQVGHEAF 159
           L D +KR +YD+ G    
Sbjct: 63  LSDAKKRDIYDRYGSGPS 80

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180

 Score =  138 bits (349), Expect = 5e-39
 Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 2/161 (1%)

Query: 272 CGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLY 331
             G    I    K     +V      V+++I PG  +   L     G  +  G  PGDL 
Sbjct: 18  YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77

Query: 332 VTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPGTQPGQKVV 390
           + I+ +  P F R+  ++ +   + + +A+ G T  V TL   ++ + ++    P  + +
Sbjct: 78  LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKI 137

Query: 391 LKNKGI-KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEF 430
           + N+G+         GD  + F++  P +LT  Q++LI+E 
Sbjct: 138 VPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEA 178

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  133 bits (338), Expect = 8e-39
 Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 84  ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143
           +S S+ DYY++LGV++ A+  ++KKAY  LA K HPD N   P A + F+ +  AY VL 
Sbjct: 2   SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLS 60

Query: 144 DDEKRSVYDQVGHEAF 159
           + EKR  YDQ G    
Sbjct: 61  NPEKRKQYDQFGSGPS 76

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score =  133 bits (337), Expect = 2e-38
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 3/90 (3%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           +     YD+LGV+ +A   E+KK Y   A K HPD    D E   KF+E+S+A+E+L D 
Sbjct: 5   VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE---KFKEISEAFEILNDP 61

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFG 175
           +KR +YDQ G EA      + GPG  GG G
Sbjct: 62  QKREIYDQYGLEAARSGGPSFGPGGPGGAG 91

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  131 bits (333), Expect = 5e-38
 Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 88  ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEK 147
            +DYY  LG+ + A+  EIK+AY   A + HPD NK +P AE+KF+E+++AY+VL D  K
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRK 60

Query: 148 RSVYDQVGHEAF 159
           R ++D+ G E  
Sbjct: 61  REIFDRYGEEGL 72

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  134 bits (339), Expect = 6e-38
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 15/141 (10%)

Query: 85  SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP------EAEKKFQEVSKA 138
            M  +D+Y +LG + +A  S++K+ Y  L    HPD    D       E  +KF E+ +A
Sbjct: 6   QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQA 65

Query: 139 YEVLKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRM 198
           +++L ++E +  YD    E  +            G  +    +  M         + +  
Sbjct: 66  WKILGNEETKREYDLQRCEDDLRN---------VGPVDAQVYLEEMSWNEGDHSFYLSCR 116

Query: 199 SGQDVKVAVELSFMEAVQGCT 219
            G    V+ + +   ++  C 
Sbjct: 117 CGGKYSVSKDEAEEVSLISCD 137

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score =  129 bits (327), Expect = 7e-37
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 29/118 (24%)

Query: 86  MSARDYYDVLGVNKNA-TASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQEVSKAYEV 141
               + YDVL VN+      ++ KAY  LA+K HPD  K+  E   AE++F+ ++ AYE 
Sbjct: 12  CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYET 71

Query: 142 LKDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMS 199
           LKDDE ++ YD                                +  +N+   +R R +
Sbjct: 72  LKDDEAKTNYDYYLDHPD-------------------------QRFYNYYQYYRLRAA 104

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  127 bits (321), Expect = 3e-36
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP------EAEKKFQEVSKAY 139
              +D+Y +LG + +A  S++K+ Y  L    HPD    D       E  +KF E+ +A+
Sbjct: 13  TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72

Query: 140 EVLKDDEKRSVYDQVGHEAF 159
           ++L ++E +  YD       
Sbjct: 73  KILGNEETKKKYDLQRSGPS 92

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score =  124 bits (314), Expect = 2e-35
 Identities = 35/72 (48%), Positives = 51/72 (70%), Gaps = 3/72 (4%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           +    YYDVLGV  +A+ +E+KKAY  +A K HPD N   P+  ++F+++S+AYEVL D+
Sbjct: 5   VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDE 61

Query: 146 EKRSVYDQVGHE 157
           +KR +YDQ G E
Sbjct: 62  KKRQIYDQGGEE 73

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109

 Score =  125 bits (316), Expect = 3e-35
 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 340 PVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTR 399
           P+F   G N+ +   L+  +A LG  + VPTL   ++L V PG+Q GQ++ +K KG+ ++
Sbjct: 5   PLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK 64

Query: 400 NSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEERGEYDKRAAAGAS 447
                GD +    + +PT   ++ REL ++ A      +D R   G +
Sbjct: 65  T--HTGDLFAVIKIVMPTKPDEKARELWQQLA-AAEASFDPRKTWGKA 109

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181

 Score =  124 bits (314), Expect = 5e-34
 Identities = 33/168 (19%), Positives = 75/168 (44%), Gaps = 4/168 (2%)

Query: 264 SINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPD 323
           S+ +    C     I ++   +  G  +    K + +++  G      +   + G    +
Sbjct: 12  SLEEIYSGCTKKMKI-SHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN 70

Query: 324 GNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPG 382
              P D+   +K +   +F+R+G+++   + +S+ +A+ G T+ VPTL G  + +  +  
Sbjct: 71  N-IPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV 129

Query: 383 TQPGQKVVLKNKGI-KTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEE 429
            +PG +  +  +G+   +     GD  + F V  P  + Q  R ++E+
Sbjct: 130 IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQ 177

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  131 bits (330), Expect = 4e-33
 Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 20/175 (11%)

Query: 84  ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLK 143
                +++Y +LGV+K A++ EI++A+  LA KLHPD N ++P A   F ++++AYEVLK
Sbjct: 16  EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLK 75

Query: 144 DDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMS---- 199
           D++ R  YD+ G +     +            +      + E I   R  F   ++    
Sbjct: 76  DEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGEL 135

Query: 200 --------GQDVKVAVELSFMEAVQGCTKTVTF-------QTELPCEACGGEGVP 239
                   G      +  ++ E  +     +            L C   G    P
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRML-CRMKGVNSYP 189

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score =  114 bits (286), Expect = 6e-31
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 89  RDYYDVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
               D+LG+ ++A  +   ++KAY    K+ HPD   D    E+K ++++  Y+ ++D  
Sbjct: 8   LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGV 63

Query: 147 KRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIF 188
           K +     G      +    G      +   +   FN EN+F
Sbjct: 64  KYAHQPDFGGFWDATEIPTYGT---DEWEQWWNA-FNEENLF 101

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104

 Score =  110 bits (278), Expect = 7e-30
 Identities = 40/102 (39%), Positives = 53/102 (51%)

Query: 200 GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIH 259
           G      +EL+F +A +G  K  T      CE C G+G  PG K + C  C GSGME+I+
Sbjct: 1   GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETIN 60

Query: 260 SGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLD 301
           +G   +  TCR+CGG G II + C  C+GA   K  K     
Sbjct: 61  TGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score =  109 bits (275), Expect = 1e-29
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE-AEKKFQEVSKAYEVLKDDEK 147
           ++   V+        SE KK    L  K HPD N ++ + A + F+ +      L   EK
Sbjct: 16  KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EK 72

Query: 148 RSVYDQVGHEAF 159
           ++  DQ    A 
Sbjct: 73  QAFLDQNADRAS 84

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score =  109 bits (275), Expect = 1e-29
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 86  MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
            +++D +D+LGV   A+  E+ KAY  LA  LHPD     P +E  F+ V  A   L  +
Sbjct: 24  RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKN 82

Query: 146 EKRSVYD 152
            K     
Sbjct: 83  IKSGPSS 89

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  110 bits (276), Expect = 8e-29
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 16/110 (14%)

Query: 89  RDYYDVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDE 146
               D+LG+ ++A  +   ++KAY    K+ HPD   D    E+K ++++  Y+ ++D  
Sbjct: 11  LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGV 66

Query: 147 KRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRN 196
           K +     G         +               I+       + +  + 
Sbjct: 67  KYAHQPDFGGFW------DATEVFASSLNPGVDAIY----CKQWPECVKK 106

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79

 Score = 88.5 bits (220), Expect = 5e-22
 Identities = 29/77 (37%), Positives = 39/77 (50%)

Query: 217 GCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTG 276
           G TK +   T   C+ C G G  PG +P+ C  C GSG   +  GF ++ QTC  C G G
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60

Query: 277 HIITNWCKSCKGARVVK 293
            +I + C  C G   V+
Sbjct: 61  TLIKDPCNKCHGHGRVE 77

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 3/68 (4%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQEVSKAYEVLKDD 145
           RDYY +LGV +NA   EI KAY  LA + HPD  +++ E   AEKKF +++ A EVL D 
Sbjct: 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441

Query: 146 EKRSVYDQ 153
           E R  +D 
Sbjct: 442 EMRKKFDD 449

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 83.1 bits (205), Expect = 5e-19
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 18/122 (14%)

Query: 90  DYYDVLGVNKNATA--SEIKKAYYGLAKKLHPDTNKDDPEAEK-----KFQEVSKAYEVL 142
           DY+ + G+          +   +  L ++ HPD      +AE+     +   +++A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 143 KDDEKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRMSGQD 202
           +    R+ Y    H   +  E            +  +D   +      R+        +D
Sbjct: 62  RHPLMRAEYLLSLHGFDLASEQ-----------HTVRDTAFLMEQLELREELDEIEQAKD 110

Query: 203 VK 204
             
Sbjct: 111 EA 112

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 342 FRREGANIHVDSVLSVTQAILGGTIQVPTLTG-DVVLKVRPG--TQPGQKVVLKNKGIKT 398
           F+R+G ++  ++ + +  AI GG   +  ++G  + + + PG    PG + V++ KG+  
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 399 RNSFSFGDQYVHFNVSIPTN--LTQRQRELIEE 429
                +G+  + F +  P N   ++   + +EE
Sbjct: 62  PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEE 94

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 75.7 bits (185), Expect = 3e-16
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 77  LRSIHGTASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQ 133
           L ++H T   +    +  +G+    T  ++KK Y      +HPD     P    A+  F 
Sbjct: 106 LSTMH-TVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFM 164

Query: 134 EVSKAYEVLKDDEKRSVY 151
           E++ A+   ++  ++ +Y
Sbjct: 165 ELNDAWSEFENQGQKPLY 182

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 88  ARDYYDVLGVNKNAT-------ASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYE 140
              +Y++                S ++K Y  L  + HPD  +      ++   +++AY 
Sbjct: 10  TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYH 66

Query: 141 VLKDDEKRSVYDQVGHEAFVHQETNGGPGH 170
            LKD  +RS Y           +       
Sbjct: 67  TLKDPLRRSQYMLKLLRNIDLTQEQTSNEV 96

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 70.9 bits (173), Expect = 2e-14
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 88  ARDYYDVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEK-----KFQEVSKAYE 140
            RDY+ ++  N++      +++  Y  L + +HPD      + EK         V+ AY+
Sbjct: 42  TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYK 101

Query: 141 VLKDDEKRSVY--DQVGHEAFVHQETNGGP 168
            L     R +Y     G E     +     
Sbjct: 102 TLLAPLSRGLYLLKLHGIEIPERTDYEMDR 131

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 6/68 (8%)

Query: 88  ARDYYDVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
                ++L + +        +++AY   +  LHPD            QE++  +   K +
Sbjct: 10  KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTE 65

Query: 146 EKRSVYDQ 153
                 + 
Sbjct: 66  VYNLRMNL 73

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 84  ASMSARDYYDVLGVNKNA-TASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVL 142
             M++++   +L + +N  T  ++K+ +  +    HPD       A K    +++A + L
Sbjct: 9   PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATK----INEAKDFL 64

Query: 143 KDDEKR 148
           +     
Sbjct: 65  EKRGIS 70

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 57.3 bits (138), Expect = 8e-11
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 92  YDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQEVSKAYEVLKD 144
           +  +G+    T  ++KK Y      +HP      P    A+  F E++ A+   ++
Sbjct: 36  WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 52.3 bits (125), Expect = 7e-09
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 92  YDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE-------AEKKFQEVSKAYEVLKD 144
           +  + +      + ++K+Y      LHPD  +           AEK F+ + +A++    
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102

Query: 145 D 145
            
Sbjct: 103 L 103

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 58/406 (14%), Positives = 104/406 (25%), Gaps = 117/406 (28%)

Query: 90  DYYDVLGVNKNA-TASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           D  DV  + K+  +  EI                  D           + +  L   ++ 
Sbjct: 34  DCKDVQDMPKSILSKEEIDHII-----------MSKDAV-----SGTLRLFWTLLSKQEE 77

Query: 149 SVYDQVGH----------EAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFRNRM 198
            V   V                  E          +      ++N   +F   ++ R + 
Sbjct: 78  MVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 199 SGQDVKVAVELSFMEAV-----QGCTKTVTFQTELPCEACGGEGV----PPGVKPEKCRR 249
             +  +  +EL   + V      G  KT      +  + C    V       +     + 
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 250 CKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVK-GSKSVK--------- 299
           C      S  +    + +   Q      I  NW      +  +K    S++         
Sbjct: 192 CN-----SPETVLEMLQKLLYQ------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 300 ------LDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKV--REDPVFRREGANIHV 351
                 L ++  V N +    F             +L   I +  R   V          
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAF-------------NLSCKILLTTRFKQV---------T 278

Query: 352 DSVLSVTQAILGGTIQVPTLTGD-------VVLKVRPGTQPGQKV-----VLKNKGIKTR 399
           D + + T   +       TLT D         L  RP   P + +      L       R
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 400 NSFSFGDQYVHFNVSIPTNLTQRQRELIEEF-----AKEERGEYDK 440
           +  +  D + H N         +   +IE         E R  +D+
Sbjct: 339 DGLATWDNWKHVNCD-------KLTTIIESSLNVLEPAEYRKMFDR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	448
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	100.0
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	100.0
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	100.0
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	100.0
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	100.0
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	99.95
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	99.92
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.87
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	99.85
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.85
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.84
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.84
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.84
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.83
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.82
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.82
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.82
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.82
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.82
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.81
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.81
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.8
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.75
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.73
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.72
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.71
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.7
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.69
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.67
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.65
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.65
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.64
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.62
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.61
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.61
2guz_A	71	Mitochondrial import inner membrane translocase su	99.6
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.59
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.54
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	99.52
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.94
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	98.76
1xao_A	121	YDJ1, mitochondrial protein import protein MAS5; b	98.73
2guz_B	65	Mitochondrial import inner membrane translocase su	98.68
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	98.61
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	98.6
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	98.59
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	98.49
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.77
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.63
3pmq_A	669	Decaheme cytochrome C MTRF; greek KEY, C type cyto	97.6
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.51
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.79
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	96.76
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	96.75
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	87.05

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=100.00  E-value=2.1e-66  Score=518.57  Aligned_cols=284  Identities=31%  Similarity=0.555  Sum_probs=161.4

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccccccC
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVHQETN  165 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~~~~~  165 (448)
                      +..+|||++|||+++||.+|||+|||+||++||||+|++ ++|+++|++|++||++|+||.+|+.||+|+.........+
T Consensus        25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~  103 (329)
T 3lz8_A           25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGR  103 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccc
Confidence            455899999999999999999999999999999999984 6899999999999999999999999999964321110000


Q ss_pred             CCCCCCCCCC-CCcccccccccccchhhhccc---------ccCCCccccccccchhhhhccceeeeeeeeeccCCCCCC
Q 013163          166 GGPGHEGGFG-NPFQDIFNMENIFNFRDIFRN---------RMSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGG  235 (448)
Q Consensus       166 ~~~~g~~gf~-~~f~~~f~~~d~f~f~~~f~~---------~~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~G  235 (448)
                      ++...+++|+ .+|+++      |  +++|+.         ..+|.|+.+.|+|+|+|+|+|+++++.+++.+.|     
T Consensus       104 ~~~~~~~~f~~~~f~di------F--~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~-----  170 (329)
T 3lz8_A          104 QRQTHEQSYSQQDFDDI------F--SSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN-----  170 (329)
T ss_dssp             -----------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC-----
T ss_pred             ccccccCCcCCCchhhh------h--HhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec-----
Confidence            0000011121 123332      2  333331         3468899999999999999999999999876532     


Q ss_pred             CCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEe
Q 013163          236 EGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVF  315 (448)
Q Consensus       236 sG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~  315 (448)
                                      +.|.+                                  .+...++++|+||||+++|++|+|+
T Consensus       171 ----------------g~G~v----------------------------------~~~~~~~l~V~IP~Gv~~G~~Irl~  200 (329)
T 3lz8_A          171 ----------------VFGMI----------------------------------ESETPKTLNVKIPAGVVDGQRIRLK  200 (329)
T ss_dssp             ----------------SCC-C----------------------------------CEEEEEEEEEEECTTCCTTCEEEES
T ss_pred             ----------------CCeEE----------------------------------EEecceEEEEeCCCCCCCCCEEEEc
Confidence                            11211                                  1233578999999999999999999


Q ss_pred             ccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCC
Q 013163          316 RSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKG  395 (448)
Q Consensus       316 g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G  395 (448)
                      |+|++.+.++.+|||||+|+|+||+.|+|+|+||+++++|+++||+||++++||||||++.|+||+|++||++++|+|+|
T Consensus       201 G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G~G  280 (329)
T 3lz8_A          201 GQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKG  280 (329)
T ss_dssp             SCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCS
T ss_pred             ccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcCCC
Confidence            99999887889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Q 013163          396 IKTRNSFSFGDQYVHFNVSIPTNLTQRQRELIEEFAKEER  435 (448)
Q Consensus       396 ~p~~~~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~~~~~  435 (448)
                      ||..  ..+|||||+|+|+||++||++|+++|++|++...
T Consensus       281 mP~~--~~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~~~~  318 (329)
T 3lz8_A          281 LVSK--THTGDLFAVIKIVMPTKPDEKARELWQQLAAAEA  318 (329)
T ss_dssp             CBCS--SCBCCEEEEEEECCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence            9975  4699999999999999999999999999998433

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=100.00  E-value=2.6e-58  Score=444.11  Aligned_cols=229  Identities=27%  Similarity=0.598  Sum_probs=204.6

Q ss_pred             cCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceE--Eeecce--eeeEecccCC
Q 013163          198 MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMES--IHSGFM--SINQTCRQCG  273 (448)
Q Consensus       198 ~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~--~~~g~~--~~~~~C~~C~  273 (448)
                      .+|.|+.+.|+|||+|+|+|+++++.+++.+.|+.|+|+|+.++. ..+|+.|+|+|++.  .+.|++  +++.+|+.|+
T Consensus         9 ~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~   87 (248)
T 1nlt_A            9 QRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCH   87 (248)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCS
T ss_pred             CCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCC
Confidence            478999999999999999999999999999999999999999988 58999999999875  345653  5778999999


Q ss_pred             ceeEEE--eeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEE
Q 013163          274 GTGHII--TNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHV  351 (448)
Q Consensus       274 G~G~~~--~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~  351 (448)
                      |+|+++  +++|+.|+|.+++.+.++++|+|||||++|++|+|+|+|++.++ +.+|||||+|+++||+.|+|+|+|||+
T Consensus        88 G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~-g~~GDl~v~i~v~~h~~F~R~G~DL~~  166 (248)
T 1nlt_A           88 GTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPD-VIPGDVVFIVSERPHKSFKRDGDDLVY  166 (248)
T ss_dssp             SSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT-CBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred             CcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCC-CCcceEEEEEEEecCccceeeCCEEEE
Confidence            999999  89999999999999999999999999999999999999999765 589999999999999999999999999


Q ss_pred             EEEeCHHHHhcCCeeeeecCCCc-EEEEeCCC--CCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCC--CCHHHHHH
Q 013163          352 DSVLSVTQAILGGTIQVPTLTGD-VVLKVRPG--TQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTN--LTQRQREL  426 (448)
Q Consensus       352 ~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g--~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~--ls~~q~~l  426 (448)
                      +++|||+|||||++++||||||+ +.|+||||  ++||++++|+|+|||..+...+|||||+|+|+||++  ||++|+++
T Consensus       167 ~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~  246 (248)
T 1nlt_A          167 EAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK  246 (248)
T ss_dssp             EEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred             EEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence            99999999999999999999996 89999999  999999999999999754447899999999999999  99999998


Q ss_pred             HH
Q 013163          427 IE  428 (448)
Q Consensus       427 l~  428 (448)
                      |+
T Consensus       247 l~  248 (248)
T 1nlt_A          247 LE  248 (248)
T ss_dssp             --
T ss_pred             hC
Confidence            85

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=100.00  E-value=2.1e-45  Score=337.99  Aligned_cols=176  Identities=22%  Similarity=0.420  Sum_probs=157.2

Q ss_pred             CCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEE
Q 013163          200 GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHII  279 (448)
Q Consensus       200 g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  279 (448)
                      +.|+.+.|+|||+|+|+|+++++.+.+                                                     
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~-----------------------------------------------------   28 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISH-----------------------------------------------------   28 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEE-----------------------------------------------------
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEec-----------------------------------------------------
Confidence            467889999999999999999987653                                                     


Q ss_pred             eeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHH
Q 013163          280 TNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQ  359 (448)
Q Consensus       280 ~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~e  359 (448)
                        +|..|+|.+++.+.++++|+||||+++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+|||++++||++|
T Consensus        29 --~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~e  105 (181)
T 3agx_A           29 --KRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLRE  105 (181)
T ss_dssp             --EEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHH
T ss_pred             --ccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEcCHHH
Confidence              23344445556678999999999999999999999999987 478999999999999999999999999999999999


Q ss_pred             HhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCccCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 013163          360 AILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGIKTRN-SFSFGDQYVHFNVSIPTNLTQRQRELIEEFA  431 (448)
Q Consensus       360 AllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~p~~~-~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~  431 (448)
                      |++|++++|+||||+ +.|++|+++|||++++|+|+|||..+ ++.+|||||+|+|+||++||++|+++|++++
T Consensus       106 AllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~  179 (181)
T 3agx_A          106 ALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL  179 (181)
T ss_dssp             HHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHS
T ss_pred             HhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence            999999999999995 88999999999999999999999754 4578999999999999999999999999997

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.8e-44  Score=330.31  Aligned_cols=176  Identities=23%  Similarity=0.417  Sum_probs=161.3

Q ss_pred             CCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEE
Q 013163          199 SGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHI  278 (448)
Q Consensus       199 ~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~  278 (448)
                      ++.|+.+.|+|||+|+|+|+++++.+++.+.|+.                                              
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------   35 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------   35 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT----------------------------------------------
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC----------------------------------------------
Confidence            4778999999999999999999999998877631                                              


Q ss_pred             EeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHH
Q 013163          279 ITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVT  358 (448)
Q Consensus       279 ~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~  358 (448)
                                 +.+++.++++|+|||||++|++|+|+|+|+++..++.+|||||+|++++|+.|+|+|+|||++++||++
T Consensus        36 -----------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~  104 (180)
T 2q2g_A           36 -----------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLV  104 (180)
T ss_dssp             -----------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHH
T ss_pred             -----------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHH
Confidence                       345567999999999999999999999999855578999999999999999999999999999999999


Q ss_pred             HHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCccCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHH
Q 013163          359 QAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGIKTRN-SFSFGDQYVHFNVSIPTNLTQRQRELIEEFA  431 (448)
Q Consensus       359 eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~p~~~-~~~~GDL~V~~~V~~P~~ls~~q~~ll~~~~  431 (448)
                      ||++|+++.|+||||+ +.|++|+++|||++++|+|+|||..+ ++.+|||||+|+|+||++||++|+++|++++
T Consensus       105 eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~  179 (180)
T 2q2g_A          105 RALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL  179 (180)
T ss_dssp             HHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred             HHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence            9999999999999995 88999999999999999999999754 3578999999999999999999999999986

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=100.00  E-value=1.1e-41  Score=310.14  Aligned_cols=168  Identities=20%  Similarity=0.353  Sum_probs=152.2

Q ss_pred             CccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163          201 QDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT  280 (448)
Q Consensus       201 ~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  280 (448)
                      +|+.+.|+|||+|+|+|+++++.+++..    +                   .                           
T Consensus         1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-------------------~---------------------------   30 (170)
T 1c3g_A            1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-------------------H---------------------------   30 (170)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-------------------T---------------------------
T ss_pred             CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-------------------C---------------------------
Confidence            3678899999999999999999998651    0                   0                           


Q ss_pred             eeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcceEEEEEeCHHHH
Q 013163          281 NWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANIHVDSVLSVTQA  360 (448)
Q Consensus       281 ~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eA  360 (448)
                               |.+ +.++++|+||||+++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+|||++++||++||
T Consensus        31 ---------G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eA  100 (170)
T 1c3g_A           31 ---------GAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKES  100 (170)
T ss_dssp             ---------TEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHH
T ss_pred             ---------CcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHH
Confidence                     112 4689999999999999999999999977777899999999999999999999999999999999999


Q ss_pred             hcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCccCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHH
Q 013163          361 ILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGIKTRN-SFSFGDQYVHFNVSIPTNLTQRQRELIE  428 (448)
Q Consensus       361 llG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~p~~~-~~~~GDL~V~~~V~~P~~ls~~q~~ll~  428 (448)
                      ++|+++.|+||||+ +.|++|+++|||++++|+|+|||..+ ++.+|||||+|+|+||++||++|+++|+
T Consensus       101 llG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~  170 (170)
T 1c3g_A          101 LLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID  170 (170)
T ss_dssp             HHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred             hCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence            99999999999996 88999999999999999999999754 3468999999999999999999999874

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=99.95  E-value=6.6e-28  Score=203.18  Aligned_cols=96  Identities=32%  Similarity=0.599  Sum_probs=90.9

Q ss_pred             EecccccccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECC
Q 013163          337 REDPVFRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIP  416 (448)
Q Consensus       337 ~~h~~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P  416 (448)
                      +||+.|+|+|+||+++++|||.||++|++++|+||||.+.|+||+|+++|++++|+|+|||.. + .+|||||+|+|+||
T Consensus         2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~~-~-~~GDL~v~~~V~~P   79 (109)
T 3i38_A            2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK-T-HTGDLFAVIKIVMP   79 (109)
T ss_dssp             --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS-S-CBCCEEEEEEECCC
T ss_pred             CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCCC-C-CCcCEEEEEEEECC
Confidence            689999999999999999999999999999999999999999999999999999999999983 3 79999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 013163          417 TNLTQRQRELIEEFAKEE  434 (448)
Q Consensus       417 ~~ls~~q~~ll~~~~~~~  434 (448)
                      ++||++|+++|+++++..
T Consensus        80 ~~Ls~~q~~~l~~l~~~~   97 (109)
T 3i38_A           80 TKPDEKARELWQQLAAAE   97 (109)
T ss_dssp             SSCCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHhhc
Confidence            999999999999999874

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.8e-25  Score=191.89  Aligned_cols=95  Identities=23%  Similarity=0.531  Sum_probs=85.2

Q ss_pred             cccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCC--CCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCC
Q 013163          341 VFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPG--TQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPT  417 (448)
Q Consensus       341 ~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g--~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~  417 (448)
                      .|+|+|+||+++++|+|.||++|+++.|+||||+ +.|+||+|  ++||++++|+|+|||..+.+.+|||||+|+|+||+
T Consensus         1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~   80 (121)
T 1xao_A            1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPE   80 (121)
T ss_dssp             CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCC
T ss_pred             CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCC
Confidence            4999999999999999999999999999999997 89999999  99999999999999975544789999999999999


Q ss_pred             C--CCHHHHHHHHHHHHHhc
Q 013163          418 N--LTQRQRELIEEFAKEER  435 (448)
Q Consensus       418 ~--ls~~q~~ll~~~~~~~~  435 (448)
                      +  ||++|+++|+++++...
T Consensus        81 ~~~ls~~q~~~l~~l~~~~~  100 (121)
T 1xao_A           81 NHFTSEENLKKLEEILPPRI  100 (121)
T ss_dssp             TTCSCHHHHHHHHHHSCCCC
T ss_pred             CCCCCHHHHHHHHHHccccc
Confidence            9  99999999999987543

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.87  E-value=2.2e-23  Score=174.01  Aligned_cols=74  Identities=57%  Similarity=0.927  Sum_probs=70.1

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||++|++++..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   75 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ   75 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence            46899999999999999999999999999999999877889999999999999999999999999999887764

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.4e-22  Score=168.04  Aligned_cols=103  Identities=39%  Similarity=0.745  Sum_probs=96.8

Q ss_pred             CCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEE
Q 013163          200 GQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHII  279 (448)
Q Consensus       200 g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  279 (448)
                      |.|+.++|+|+|+|+|+|+++++.+++.+.|+.|+|+|..++..+.+|+.|+|+|++...+|+|+++.+|+.|+|.|+++
T Consensus         1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i   80 (104)
T 2ctt_A            1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII   80 (104)
T ss_dssp             CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred             CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence            45788999999999999999999999999999999999999988999999999999887779999999999999999999


Q ss_pred             eeeccccCCCeEEecceEEEEEe
Q 013163          280 TNWCKSCKGARVVKGSKSVKLDI  302 (448)
Q Consensus       280 ~~~C~~C~G~g~v~~~k~l~V~I  302 (448)
                      +++|+.|+|.+.+++.++|+|+|
T Consensus        81 ~~~C~~C~G~G~v~~~k~l~V~~  103 (104)
T 2ctt_A           81 ISPCVVCRGAGQAKQKKRSGPSS  103 (104)
T ss_dssp             SSCCSSSSSCSEECCCCSSCCSC
T ss_pred             CCcCCCCCCeeEEEEEEEEEEEc
Confidence            99999999999999999888765

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=7.3e-22  Score=156.75  Aligned_cols=72  Identities=60%  Similarity=0.959  Sum_probs=68.3

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHE  157 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  157 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||.+|..
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            456899999999999999999999999999999999998888999999999999999999999999999864

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.4e-21  Score=158.41  Aligned_cols=75  Identities=52%  Similarity=0.869  Sum_probs=70.1

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++ +++++++|++|++||++|+||.+|+.||.+|+.++..
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   78 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS   78 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence            45689999999999999999999999999999999998 5889999999999999999999999999999877653

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.84  E-value=9.3e-22  Score=155.38  Aligned_cols=73  Identities=45%  Similarity=0.843  Sum_probs=68.0

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV  160 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  160 (448)
                      |..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||++|.+++.
T Consensus         1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   73 (77)
T 1hdj_A            1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence            35799999999999999999999999999999999974 67899999999999999999999999999987654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2.5e-21  Score=160.32  Aligned_cols=71  Identities=41%  Similarity=0.586  Sum_probs=67.0

Q ss_pred             CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccc
Q 013163           85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVG  155 (448)
Q Consensus        85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g  155 (448)
                      .+...|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||++.
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l   83 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL   83 (99)
T ss_dssp             SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            46678999999999999999999999999999999999888899999999999999999999999999854

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.9e-21  Score=157.82  Aligned_cols=76  Identities=51%  Similarity=0.824  Sum_probs=69.6

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++.+ ++++++|++|++||++|+||.+|+.||++|.+++..
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   82 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA   82 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            3457999999999999999999999999999999999865 478999999999999999999999999999877654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=3e-21  Score=154.33  Aligned_cols=73  Identities=48%  Similarity=0.806  Sum_probs=67.2

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhcccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEA  158 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  158 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++.+ ++++++|++|++||++|+||.+|+.||++|..+
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4457999999999999999999999999999999999865 368899999999999999999999999999654

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=3.5e-21  Score=163.07  Aligned_cols=74  Identities=30%  Similarity=0.553  Sum_probs=69.5

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAF  159 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  159 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||++|.+++
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            44689999999999999999999999999999999999878999999999999999999999999999997654

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=5.7e-21  Score=160.97  Aligned_cols=76  Identities=47%  Similarity=0.770  Sum_probs=71.2

Q ss_pred             CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 013163           85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV  160 (448)
Q Consensus        85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  160 (448)
                      +....|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||++|..++.
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~   88 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY   88 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence            4556899999999999999999999999999999999998889999999999999999999999999999987654

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=5.5e-21  Score=154.90  Aligned_cols=72  Identities=51%  Similarity=0.821  Sum_probs=67.1

Q ss_pred             CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccc
Q 013163           85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHE  157 (448)
Q Consensus        85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  157 (448)
                      .....|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||.+|+.
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            3456899999999999999999999999999999999985 77899999999999999999999999999864

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.7e-21  Score=157.17  Aligned_cols=72  Identities=44%  Similarity=0.718  Sum_probs=66.4

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      +..|||+||||+++|+.+|||+|||+|+++||||+++++   .++|++|++||++|+||.+|+.||++|.++...
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            457999999999999999999999999999999999765   458999999999999999999999999887664

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=5.4e-21  Score=151.35  Aligned_cols=72  Identities=46%  Similarity=0.789  Sum_probs=67.0

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEA  158 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  158 (448)
                      ....|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|..+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            456899999999999999999999999999999999974 789999999999999999999999999998643

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-20  Score=156.36  Aligned_cols=73  Identities=49%  Similarity=0.799  Sum_probs=65.4

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      .|||+||||+++|+.+|||+|||+|+++||||+++++ +.++++|++|++||++|+||.+|+.||.+|.+++..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~   75 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG   75 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence            5899999999999999999999999999999999865 468899999999999999999999999999877654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.81  E-value=1.5e-20  Score=146.88  Aligned_cols=68  Identities=51%  Similarity=0.895  Sum_probs=61.9

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHE  157 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~  157 (448)
                      ...|||+||||+++|+.++||+|||+|+++||||+++++   .++|++|++||++|+||.+|+.||++|++
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   73 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGEE   73 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence            357999999999999999999999999999999999753   57899999999999999999999999863

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.80  E-value=2.1e-20  Score=153.18  Aligned_cols=73  Identities=30%  Similarity=0.579  Sum_probs=66.1

Q ss_pred             CCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHhhhcccccccccccccc
Q 013163           84 ASMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD------PEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH  156 (448)
Q Consensus        84 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  156 (448)
                      ..+...|||+||||+++|+.+|||+|||+|+++||||+++.+      +.++++|++|++||++|+||.+|+.||.+..
T Consensus        11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            345678999999999999999999999999999999998743      5688999999999999999999999998653

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=8.1e-20  Score=170.63  Aligned_cols=73  Identities=42%  Similarity=0.810  Sum_probs=69.2

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      .|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||++|.+++..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~   74 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   74 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence            5899999999999999999999999999999999888899999999999999999999999999999877653

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.75  E-value=2.9e-19  Score=150.55  Aligned_cols=71  Identities=41%  Similarity=0.634  Sum_probs=65.7

Q ss_pred             CCccCchhhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHhhhcccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNA-TASEIKKAYYGLAKKLHPDTNKD---DPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH  156 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a-~~~eIk~ayr~la~~~HPD~~~~---~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  156 (448)
                      ....|||+||||+++| +.+|||+|||+|+++||||++++   .+.++++|++|++||++|+||.+|+.||+++.
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            3468999999999999 99999999999999999999875   35688999999999999999999999999885

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2.6e-18  Score=139.62  Aligned_cols=62  Identities=37%  Similarity=0.549  Sum_probs=58.5

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccc
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSV  150 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~  150 (448)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence            4799999999999999999999999999999999984 7788999999999999999999975

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=3.1e-18  Score=153.19  Aligned_cols=72  Identities=32%  Similarity=0.612  Sum_probs=65.5

Q ss_pred             CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------HHHHHHHHHHHHHhhhcccccccccccccc
Q 013163           85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP------EAEKKFQEVSKAYEVLKDDEKRSVYDQVGH  156 (448)
Q Consensus        85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~------~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  156 (448)
                      .+...|||+||||+++|+.++||+|||+|+++||||+++.++      .|.++|++|++||++|+||.+|+.||.++.
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            355689999999999999999999999999999999988653      377999999999999999999999998764

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.71  E-value=5.1e-18  Score=137.05  Aligned_cols=68  Identities=21%  Similarity=0.196  Sum_probs=60.7

Q ss_pred             CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHhhhcccccccccc
Q 013163           85 SMSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEKRSVYD  152 (448)
Q Consensus        85 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yd  152 (448)
                      .+...++|+||||+++|+.+|||+|||+|+++||||+++++ ++|+++|++|++||++|+|...|..+.
T Consensus        12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~~   80 (88)
T 1iur_A           12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNA   80 (88)
T ss_dssp             SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSSS
T ss_pred             CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            35568999999999999999999999999999999999877 458999999999999999998884443

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.70  E-value=1.7e-18  Score=146.52  Aligned_cols=65  Identities=28%  Similarity=0.498  Sum_probs=60.6

Q ss_pred             ccCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccc
Q 013163           88 ARDYYDVLGVNKNATA--SEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH  156 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~--~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  156 (448)
                      ..+||+||||+++|+.  ++||+|||+||++||||++++    +++|++|++||++|+||.+|+.||.+|.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4689999999999999  999999999999999999874    4689999999999999999999999874

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.69  E-value=8.1e-18  Score=133.31  Aligned_cols=67  Identities=18%  Similarity=0.317  Sum_probs=59.4

Q ss_pred             ccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccc
Q 013163           88 ARDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAF  159 (448)
Q Consensus        88 ~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~  159 (448)
                      ..++|+||||+++  |+.+|||+|||+|+++||||++++    .++|++|++||++|+|+.+|.. +.||.+++
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~   78 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLR-MNLGGTGF   78 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence            3689999999999  999999999999999999999863    4689999999999999999988 55776543

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.67  E-value=3.9e-18  Score=154.07  Aligned_cols=65  Identities=28%  Similarity=0.491  Sum_probs=58.0

Q ss_pred             ccCchhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccc
Q 013163           88 ARDYYDVLGVNKNAT--ASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGH  156 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~--~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  156 (448)
                      ..|||+||||+++|+  .+|||+|||+||+++|||++++    +++|++|++||++|+||.+|+.||+||.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            478999999999998  6999999999999999999875    3689999999999999999999999995

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.65  E-value=2.6e-17  Score=133.41  Aligned_cols=56  Identities=21%  Similarity=0.381  Sum_probs=52.2

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHhhhcc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP---EAEKKFQEVSKAYEVLKD  144 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d  144 (448)
                      .++|++|||+++||.+|||+|||++|++||||+|++++   .|+++|++|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999998765   388999999999999986

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.64  E-value=5.3e-17  Score=147.51  Aligned_cols=63  Identities=22%  Similarity=0.456  Sum_probs=59.5

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHhhhccccccccc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE---AEKKFQEVSKAYEVLKDDEKRSVY  151 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~---a~~~f~~i~~Ay~~L~d~~~R~~y  151 (448)
                      .|||++|||+++|+.+|||+|||+|+++||||++++.+.   |+++|++|++||++|+|+.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            699999999999999999999999999999999986543   889999999999999999999988

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.62  E-value=9.6e-17  Score=145.58  Aligned_cols=66  Identities=18%  Similarity=0.373  Sum_probs=61.1

Q ss_pred             CchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccccc
Q 013163           90 DYYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQVG  155 (448)
Q Consensus        90 d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~~g  155 (448)
                      |||++|||++++  +.++||+|||+|+++||||+++++++     |.++|+.|++||++|+||.+|+.||...
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l   74 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            799999999999  99999999999999999999987643     5679999999999999999999999864

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.61  E-value=4.7e-17  Score=180.05  Aligned_cols=76  Identities=41%  Similarity=0.769  Sum_probs=40.9

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFVH  161 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~~  161 (448)
                      ....|||+||||+++||.+|||+|||+||++||||+++++++++++|++|++||++|+||.+|+.||+||++++..
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~   93 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED   93 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence            4568999999999999999999999999999999999878899999999999999999999999999999887654

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.61  E-value=2.5e-16  Score=146.95  Aligned_cols=66  Identities=26%  Similarity=0.487  Sum_probs=60.1

Q ss_pred             ccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHhhhccccccccccc
Q 013163           88 ARDYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDPE-----AEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        88 ~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~~-----a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      ..|||++|||+++  ++.++||+|||+|+++||||+++++++     |.++|++|++||++|+||.+|+.||.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~  114 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL  114 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            5799999999986  799999999999999999999986532     56789999999999999999999995

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.60  E-value=4.8e-16  Score=120.54  Aligned_cols=60  Identities=15%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             CCccCchhhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccc
Q 013163           86 MSARDYYDVLGVNK-NATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRS  149 (448)
Q Consensus        86 ~~~~d~y~iLgv~~-~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~  149 (448)
                      +...++|+||||++ +|+.+|||+|||+|+++||||++. +   .++|++|++||++|+|+..|+
T Consensus        11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g-~---~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A           11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG-S---PFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC-C---HHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-C---HHHHHHHHHHHHHHhhhhhcC
Confidence            45579999999999 799999999999999999999974 3   358999999999999988763

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=2.2e-16  Score=131.84  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----HHHHHHHHHHHHHhhhcccc
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKD---DP----EAEKKFQEVSKAYEVLKDDE  146 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~---~~----~a~~~f~~i~~Ay~~L~d~~  146 (448)
                      ..|||+|||++. ||.+|||+|||+||++||||+|++   ++    .|+++|++|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            479999999996 999999999999999999999863   22    47899999999999999986

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.54  E-value=8.1e-16  Score=140.56  Aligned_cols=67  Identities=24%  Similarity=0.403  Sum_probs=60.1

Q ss_pred             CCccCchhhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccc
Q 013163           86 MSARDYYDVL------GVNK-NATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVG  155 (448)
Q Consensus        86 ~~~~d~y~iL------gv~~-~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g  155 (448)
                      ....|||+||      |+++ +|+.++||+|||+|+++||||++++   +.++|++|++||++|+||.+|+.||...
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            3457999999      4665 9999999999999999999999975   6778999999999999999999999844

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=99.52  E-value=7.8e-15  Score=116.00  Aligned_cols=78  Identities=37%  Similarity=0.891  Sum_probs=71.4

Q ss_pred             cceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEec
Q 013163          217 GCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKG  294 (448)
Q Consensus       217 G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  294 (448)
                      |++++|.+++.+.|+.|+|+|..++....+|+.|+|+|+++...|+++++.+|+.|+|.|++++++|+.|+|.+.+.+
T Consensus         1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~   78 (79)
T 1exk_A            1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence            567889999999999999999988877889999999999876669999899999999999999999999999998864

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.23  E-value=1.3e-11  Score=118.36  Aligned_cols=117  Identities=21%  Similarity=0.379  Sum_probs=76.1

Q ss_pred             eccCCCCCCCCCCC-----C----CccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe-------eeccccCCCe
Q 013163          227 ELPCEACGGEGVPP-----G----VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT-------NWCKSCKGAR  290 (448)
Q Consensus       227 ~~~C~~C~GsG~~~-----~----~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------~~C~~C~G~g  290 (448)
                      ...|+.|+|+|...     +    ....+|+.|+|+|.++      ....+|+.|+|.|.+..       .+--.-.|..
T Consensus        54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i------~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~  127 (248)
T 1nlt_A           54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII------DPKDRCKSCNGKKVENERKILEVHVEPGMKDGQR  127 (248)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC------CTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCE
T ss_pred             CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe------ccCCCCcccCCCceEeeeEEEEEEECCCccCCCE
Confidence            37899999999641     1    1356899999999765      22568999999986542       1111111111


Q ss_pred             EE------------------------------------------------------e--cceEEEEEecCC--CCCCcee
Q 013163          291 VV------------------------------------------------------K--GSKSVKLDIMPG--VDNNETL  312 (448)
Q Consensus       291 ~v------------------------------------------------------~--~~k~l~V~Ip~G--~~~G~~i  312 (448)
                      +.                                                      .  ..+.++|.||||  +++|+++
T Consensus       128 ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~  207 (248)
T 1nlt_A          128 IVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRK  207 (248)
T ss_dssp             EEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEE
T ss_pred             EEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEE
Confidence            11                                                      1  112578889999  9999999


Q ss_pred             EEeccCCCCCCCCCCccEEEEEEEEeccc--ccccCcce
Q 013163          313 KVFRSGGADPDGNQPGDLYVTIKVREDPV--FRREGANI  349 (448)
Q Consensus       313 ~~~g~G~~~~~g~~~GDL~v~i~v~~h~~--f~R~G~DL  349 (448)
                      +|+|+|.+...+...|||||+|+|.-+..  +..+...|
T Consensus       208 rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~  246 (248)
T 1nlt_A          208 VIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK  246 (248)
T ss_dssp             EETTCSCBCSSSCSBCCEEEEEEEECCC-----------
T ss_pred             EEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHh
Confidence            99999998765446799999999997776  66555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.94  E-value=4.3e-10  Score=113.50  Aligned_cols=65  Identities=49%  Similarity=0.776  Sum_probs=56.0

Q ss_pred             cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHhhhccccccccccc
Q 013163           89 RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD---PEAEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        89 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      .++|++||+.+.++.++|+++|+++++++|||+.+.+   ++++++|++|.+||++|+||++|..||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4899999999999999999999999999999998754   3488999999999999999999999996

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=98.76  E-value=3.7e-09  Score=88.47  Aligned_cols=81  Identities=22%  Similarity=0.369  Sum_probs=65.2

Q ss_pred             cCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeE
Q 013163          198 MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGH  277 (448)
Q Consensus       198 ~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  277 (448)
                      +.|.|+...+.|+|.||+.|+++++..-                                                    
T Consensus         9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl----------------------------------------------------   36 (109)
T 3i38_A            9 IVGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------------------   36 (109)
T ss_dssp             EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred             EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence            3678999999999999999987665421                                                    


Q ss_pred             EEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecccccccCcce
Q 013163          278 IITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPVFRREGANI  349 (448)
Q Consensus       278 ~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~f~R~G~DL  349 (448)
                                      .+ .++|.||+|+++|++++++|+|.+..  +.+|||||+|+|.-+..+..+..++
T Consensus        37 ----------------dG-~~~v~ip~g~~~G~~~rl~G~G~p~~--~~~GDL~v~~~V~~P~~Ls~~q~~~   89 (109)
T 3i38_A           37 ----------------KE-SILLTVPPGSQAGQRLRIKGKGLVSK--THTGDLFAVIKIVMPTKPDEKAREL   89 (109)
T ss_dssp             ----------------SS-CEEEEECTTCCTTCEEEETTCSCBCS--SCBCCEEEEEEECCCSSCCHHHHHH
T ss_pred             ----------------CC-CEEEeeCCCcCcCeEEEECCccCCCC--CCCcCEEEEEEEECCCCCCHHHHHH
Confidence                            01 36899999999999999999999873  3789999999999887666554443

>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}

Probab=98.73  E-value=7.2e-09  Score=88.34  Aligned_cols=84  Identities=17%  Similarity=0.250  Sum_probs=64.1

Q ss_pred             cCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeE
Q 013163          198 MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGH  277 (448)
Q Consensus       198 ~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  277 (448)
                      +.|.|+.+.+.|+|.||+.|++..+..-                                                    
T Consensus         4 R~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------   31 (121)
T 1xao_A            4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (121)
T ss_dssp             EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred             EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence            3578999999999999999987665310                                                    


Q ss_pred             EEeeeccccCCCeEEecceEEEEEecCC--CCCCceeEEeccCCCCCCCCCCccEEEEEEEEeccc--ccccCcce
Q 013163          278 IITNWCKSCKGARVVKGSKSVKLDIMPG--VDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDPV--FRREGANI  349 (448)
Q Consensus       278 ~~~~~C~~C~G~g~v~~~k~l~V~Ip~G--~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~~--f~R~G~DL  349 (448)
                                      .++.++|.||||  +++|++++++|+|.+...+...|||||+++|.-+..  +..+..++
T Consensus        32 ----------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~   91 (121)
T 1xao_A           32 ----------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKK   91 (121)
T ss_dssp             ----------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHH
T ss_pred             ----------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH
Confidence                            134678999999  999999999999998765446899999999998776  66655443

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.68  E-value=1.3e-08  Score=76.83  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=45.4

Q ss_pred             cCchhhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccc
Q 013163           89 RDYYDVLGVNKN---ATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD  145 (448)
Q Consensus        89 ~d~y~iLgv~~~---a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~  145 (448)
                      .+.|.||||+++   ++.++|+++||+|....|||+..+ +   -...+|++|++.|...
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS-~---yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS-F---YLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC-H---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHHHHHH
Confidence            467999999999   999999999999999999999753 2   3467899999998643

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=98.61  E-value=6.7e-08  Score=87.20  Aligned_cols=75  Identities=16%  Similarity=0.245  Sum_probs=62.7

Q ss_pred             ceEEEEEeCHHHHhcCCeeeeecC----CC-----cEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCCC
Q 013163          348 NIHVDSVLSVTQAILGGTIQVPTL----TG-----DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPTN  418 (448)
Q Consensus       348 DL~~~~~Isl~eAllG~~~~v~tl----dG-----~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~~  418 (448)
                      |+.+++.|||.||+.|.+++|..-    +|     .+.|+||+|+..|++++++|+|-+...++..|||||+++|.-.+.
T Consensus         2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~   81 (170)
T 1c3g_A            2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPN   81 (170)
T ss_dssp             EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSS
T ss_pred             CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCc
Confidence            789999999999999999877643    12     367999999999999999999987656667899999999986665


Q ss_pred             CCHH
Q 013163          419 LTQR  422 (448)
Q Consensus       419 ls~~  422 (448)
                      ++.+
T Consensus        82 F~R~   85 (170)
T 1c3g_A           82 FKRD   85 (170)
T ss_dssp             EEEE
T ss_pred             cEEe
Confidence            5433

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=98.60  E-value=3.5e-08  Score=98.19  Aligned_cols=76  Identities=16%  Similarity=0.286  Sum_probs=53.8

Q ss_pred             cCcceEEEEEeCHHHHhcCCeeeeecC------C--------CcEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEE
Q 013163          345 EGANIHVDSVLSVTQAILGGTIQVPTL------T--------GDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVH  410 (448)
Q Consensus       345 ~G~DL~~~~~Isl~eAllG~~~~v~tl------d--------G~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~  410 (448)
                      .|.||.+++.|+|.||..|.+..|..-      .        ..+.|+||||+++|++++|+|+|.|..+++..|||||+
T Consensus       139 ~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~  218 (329)
T 3lz8_A          139 RGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLV  218 (329)
T ss_dssp             CCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEE
T ss_pred             CCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEE
Confidence            455666666666666666654333221      1        24679999999999999999999997666678999999


Q ss_pred             EEEECCCCCC
Q 013163          411 FNVSIPTNLT  420 (448)
Q Consensus       411 ~~V~~P~~ls  420 (448)
                      |+|.-...+.
T Consensus       219 I~v~~h~~F~  228 (329)
T 3lz8_A          219 IHIAPHPLFD  228 (329)
T ss_dssp             ECCCCCSSCE
T ss_pred             EEEecCCccE
Confidence            9988666554

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=98.59  E-value=8.9e-08  Score=87.21  Aligned_cols=77  Identities=17%  Similarity=0.260  Sum_probs=62.8

Q ss_pred             CcceEEEEEeCHHHHhcCCeeeeecC------------CCcEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEE
Q 013163          346 GANIHVDSVLSVTQAILGGTIQVPTL------------TGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNV  413 (448)
Q Consensus       346 G~DL~~~~~Isl~eAllG~~~~v~tl------------dG~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V  413 (448)
                      |.|+.+++.|||.||..|.+.+|..-            ...+.|+||+|+..|++++++|+|-+...++..|||||.++|
T Consensus         3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~   82 (180)
T 2q2g_A            3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQT   82 (180)
T ss_dssp             -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEE
T ss_pred             CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEE
Confidence            67999999999999999998777642            124679999999999999999999874345678999999999


Q ss_pred             ECCCCCCHH
Q 013163          414 SIPTNLTQR  422 (448)
Q Consensus       414 ~~P~~ls~~  422 (448)
                      .-...+..+
T Consensus        83 ~~h~~F~R~   91 (180)
T 2q2g_A           83 KTHPRFTRD   91 (180)
T ss_dssp             CCCSSCEEE
T ss_pred             EecccEEEc
Confidence            866655433

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=98.49  E-value=1.9e-07  Score=85.05  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=59.5

Q ss_pred             CcceEEEEEeCHHHHhcCCeeeeecC------CC--------cEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEE
Q 013163          346 GANIHVDSVLSVTQAILGGTIQVPTL------TG--------DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHF  411 (448)
Q Consensus       346 G~DL~~~~~Isl~eAllG~~~~v~tl------dG--------~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~  411 (448)
                      +.|+.+++.|||.||..|.+.+|..-      .|        .+.|+||+|+..|++++++|+|-+..+ +..|||||.+
T Consensus         2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~-g~~GDl~v~i   80 (181)
T 3agx_A            2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN-NIPADIVFVL   80 (181)
T ss_dssp             ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSS-SCCCCEEEEE
T ss_pred             CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCC-CCcccEEEEE
Confidence            56899999999999999998777532      23        256899999999999999999998653 5689999999


Q ss_pred             EEECCCCCCHH
Q 013163          412 NVSIPTNLTQR  422 (448)
Q Consensus       412 ~V~~P~~ls~~  422 (448)
                      +|.-...+..+
T Consensus        81 ~~~~h~~F~R~   91 (181)
T 3agx_A           81 KDKPHNIFKRD   91 (181)
T ss_dssp             EECCCSSCEEE
T ss_pred             EEeccccceee
Confidence            99876666543

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=5.5e-06  Score=68.42  Aligned_cols=46  Identities=35%  Similarity=0.728  Sum_probs=36.8

Q ss_pred             eccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163          227 ELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT  280 (448)
Q Consensus       227 ~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  280 (448)
                      ...|+.|+|+|...     .....+|+.|+|+|.++        ..+|+.|+|.|.+..
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~~   95 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII--------ISPCVVCRGAGQAKQ   95 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC--------SSCCSSSSSCSEECC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC--------CCcCCCCCCeeEEEE
Confidence            46899999999542     12346899999999876        578999999998764

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.63  E-value=1.2e-05  Score=57.82  Aligned_cols=32  Identities=28%  Similarity=0.686  Sum_probs=26.8

Q ss_pred             eeeEecccCCceeEEEeeeccccCCCeEEecc
Q 013163          264 SINQTCRQCGGTGHIITNWCKSCKGARVVKGS  295 (448)
Q Consensus       264 ~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~  295 (448)
                      +++.+|+.|+|+|+++..+|+.|+|.|.+.+.
T Consensus         7 q~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            7 DLETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             HHEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             ceeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            45788999999999988999999999887654

>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}

Probab=97.60  E-value=2.1e-06  Score=92.09  Aligned_cols=74  Identities=16%  Similarity=0.221  Sum_probs=58.7

Q ss_pred             ccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCC---ccccCcCCCCCCceE------------Eeecce-eeeE
Q 013163          204 KVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGV---KPEKCRRCKGSGMES------------IHSGFM-SINQ  267 (448)
Q Consensus       204 ~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~---~~~~C~~C~G~G~~~------------~~~g~~-~~~~  267 (448)
                      .+.++++|+|++.|.++++.+.+...|+.|+|+|..++.   .+.+|+.|+|+....            .+.|.| +...
T Consensus       168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~  247 (669)
T 3pmq_A          168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS  247 (669)
T ss_dssp             SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred             eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence            467899999999999999999999999999999999987   688999999994221            012322 3345


Q ss_pred             ecccCCceeE
Q 013163          268 TCRQCGGTGH  277 (448)
Q Consensus       268 ~C~~C~G~G~  277 (448)
                      .|..|+..+.
T Consensus       248 ~C~~CH~~~~  257 (669)
T 3pmq_A          248 NCQTCHADNP  257 (669)
T ss_dssp             CCTTTSCCCT
T ss_pred             cchhhcCCcc
Confidence            7888888764

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.51  E-value=5.9e-05  Score=58.75  Aligned_cols=46  Identities=33%  Similarity=0.749  Sum_probs=27.4

Q ss_pred             ccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe--------eeccccCCCeEEe
Q 013163          243 KPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT--------NWCKSCKGARVVK  293 (448)
Q Consensus       243 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~--------~~C~~C~G~g~v~  293 (448)
                      +..+|+.|+|+|...     .+...+|+.|+|+|+++.        .+|..|+|.+.+.
T Consensus        10 ~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A           10 TLEECDVCHGSGAKP-----GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             CEEECGGGTTTSBCS-----SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred             cceECCCCcccccCC-----CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence            345677777777532     122356777777776653        4677777766553

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.79  E-value=0.00039  Score=49.92  Aligned_cols=24  Identities=33%  Similarity=0.804  Sum_probs=9.9

Q ss_pred             ecccCCceeEEEeeeccccCCCeE
Q 013163          268 TCRQCGGTGHIITNWCKSCKGARV  291 (448)
Q Consensus       268 ~C~~C~G~G~~~~~~C~~C~G~g~  291 (448)
                      +|+.|+|+|.++..+|+.|+|.|.
T Consensus        11 ~C~~C~GsG~~~~~~C~~C~G~G~   34 (53)
T 2bx9_A           11 ACPKCERAGEIEGTPCPACSGKGV   34 (53)
T ss_dssp             ECTTTTTSSEETTEECTTTTTSSE
T ss_pred             cCCCCcceeccCCCCCccCCCCcc
Confidence            344444444433344444444443

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=96.76  E-value=0.00048  Score=49.46  Aligned_cols=27  Identities=33%  Similarity=0.815  Sum_probs=13.2

Q ss_pred             ccCCCCCCCCCCCCCccccCcCCCCCCceE
Q 013163          228 LPCEACGGEGVPPGVKPEKCRRCKGSGMES  257 (448)
Q Consensus       228 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~  257 (448)
                      .+|+.|+|+|....   .+|+.|+|+|.+.
T Consensus        10 ~~C~~C~GsG~~i~---~~C~~C~G~G~v~   36 (53)
T 3lcz_A           10 TTCPNCNGSGREEP---EPCPKCLGKGVIL   36 (53)
T ss_dssp             EECTTTTTSCEETT---EECTTTTTSSEEE
T ss_pred             ccCcCCcccccCCC---CcCCCCCCcEEEE
Confidence            45555555554322   3455555555443

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=96.75  E-value=0.00051  Score=49.34  Aligned_cols=28  Identities=29%  Similarity=0.726  Sum_probs=16.4

Q ss_pred             ccCCCCCCCCCCCCCccccCcCCCCCCceEE
Q 013163          228 LPCEACGGEGVPPGVKPEKCRRCKGSGMESI  258 (448)
Q Consensus       228 ~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~  258 (448)
                      ..|+.|+|+|....   .+|+.|+|+|.+..
T Consensus        10 ~~C~~C~GsG~~~~---~~C~~C~G~G~v~~   37 (53)
T 2bx9_A           10 VACPKCERAGEIEG---TPCPACSGKGVILT   37 (53)
T ss_dssp             EECTTTTTSSEETT---EECTTTTTSSEEEC
T ss_pred             ccCCCCcceeccCC---CCCccCCCCccEEE
Confidence            46777777765432   45666666665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=87.05  E-value=0.28  Score=52.77  Aligned_cols=46  Identities=15%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             ccCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhh
Q 013163           88 ARDYYDVLGVNKNATA--SEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEV  141 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~--~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~  141 (448)
                      ..|||.+||++.++..  .+|++|||+||+..+++        ++++..|..|+.|
T Consensus       628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence            4569999999776655  77999999999976444        4688899999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	448
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-28
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	3e-22
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-22
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	1e-21
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-21
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-20
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	5e-19
d1c3ga2	90	b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba	2e-18
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-18
d1exka_	79	g.54.1.1 (A:) Cysteine-rich domain of the chaperon	2e-16
d1nlta2	80	b.4.1.1 (A:258-337) Mitochondrial protein import p	5e-15
d1nlta3	74	g.54.1.1 (A:139-212) Mitochondrial protein import	6e-12
d1m1qa_	90	a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum	1e-09
d1c3ga1	80	b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba	2e-09
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	2e-05
d1nlta1	74	b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei	0.001

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (260), Expect = 3e-28
 Identities = 42/71 (59%), Positives = 53/71 (74%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKR 148
           +DYY++LGV+K A   EI+KAY  LA K HPD N+ D EAE KF+E+ +AYEVL D +KR
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 149 SVYDQVGHEAF 159
           + YDQ GH AF
Sbjct: 63  AAYDQYGHAAF 73

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.6 bits (219), Expect = 3e-22
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 82  GTASMSA-----RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKK----- 131
           G++ M+      +D+Y +LG + +A  S++K+ Y  L    HPD    D  A        
Sbjct: 4   GSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQ 63

Query: 132 -FQEVSKAYEVLKDDEKRSVYDQVGHEAF 159
            F E+ +A+++L ++E +  YD       
Sbjct: 64  KFIEIDQAWKILGNEETKKKYDLQRSGPS 92

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 89.1 bits (220), Expect = 4e-22
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 88  ARDYYDVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
           +    D+LG+ ++A  +   ++KAY    K+ HPD   D+     K ++++  Y+ ++D 
Sbjct: 7   SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKMEDG 62

Query: 146 EKRSVYDQVGHEAFVHQETNGGPGHEGGFGNPFQDIFNMENIFNFRDIFR 195
            K +     G      +    G      + N     FN EN+F   ++  
Sbjct: 63  VKYAHQPDFGGFWDATEIPTYGTDEWEQWWNA----FNEENLFCSEEMPS 108

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 1e-21
 Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 88  ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEK 147
            +DYY  LG+ + A+  EIK+AY   A + HPD N  +P AE+KF+E+++AY+VL D  K
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN-KEPGAEEKFKEIAEAYDVLSDPRK 60

Query: 148 RSVYDQVGHEAF 159
           R ++D+ G E  
Sbjct: 61  REIFDRYGEEGL 72

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 85.5 bits (211), Expect = 2e-21
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 90  DYYDVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEK-----KFQEVSKAYEVL 142
           DY+ + G+          +   +  L ++ HPD      +AE+     +   +++A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 143 KDDEKRSVYD 152
           +    R+ Y 
Sbjct: 62  RHPLMRAEYL 71

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.8 bits (207), Expect = 2e-20
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 71  NSNLGGLRSIHGTASM---SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPE 127
                 +R++  T      +    +  +G+    T  ++KK Y      +HPD     P 
Sbjct: 12  EGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY 71

Query: 128 ---AEKKFQEVSKAYEVLKDDEKRSVY 151
              A+  F E++ A+   ++  ++ +Y
Sbjct: 72  EQYAKMIFMELNDAWSEFENQGQKPLY 98

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 5e-19
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 89  RDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD-PEAEKKFQEVSKAYEVLKDDEK 147
           ++   V+        SE KK    L  K HPD N ++   A + F+ +      L+   K
Sbjct: 16  KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---K 72

Query: 148 RSVYDQVGHEA 158
           ++  DQ    A
Sbjct: 73  QAFLDQNADRA 83

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 342 FRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVV-LKVRPGTQPGQKVVLKNKGI-KTR 399
           F+R+G ++     LS  +++LG +  + T+ G  + L      QP Q      +G+   +
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61

Query: 400 NSFSFGDQYVHFNVSIPTNLTQRQRELIE 428
           N    G+  V + V  P +L   Q+  I+
Sbjct: 62  NPSQRGNLIVKYKVDYPISLNDAQKRAID 90

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 76.6 bits (188), Expect = 3e-18
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 88  ARDYYDVLGVNKNATAS--EIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDD 145
                ++L + +        +++AY   +  LHPD            QE++  +   K +
Sbjct: 10  KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA----LMQELNSLWGTFKTE 65

Query: 146 EKRSVYDQVG 155
                 +  G
Sbjct: 66  VYNLRMNLGG 75

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 30/79 (37%), Positives = 40/79 (50%)

Query: 217 GCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTG 276
           G TK +   T   C+ C G G  PG +P+ C  C GSG   +  GF ++ QTC  C G G
Sbjct: 1   GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60

Query: 277 HIITNWCKSCKGARVVKGS 295
            +I + C  C G   V+ S
Sbjct: 61  TLIKDPCNKCHGHGRVERS 79

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.7 bits (165), Expect = 5e-15
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 342 FRREGANIHVDSVLSVTQAILGGTIQVPTLTGDVV---LKVRPGTQPGQKVVLKNKGIKT 398
           F+R+G ++  ++ + +  AI GG   +  ++GD +   +       PG + V++ KG+  
Sbjct: 2   FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61

Query: 399 RNSFSFGDQYVHFNVSIP 416
                +G+  + F +  P
Sbjct: 62  PKYGGYGNLIIKFTIKDP 79

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (142), Expect = 6e-12
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 230 CEACGGEGVPPGVKPEKCRRCKGSGMES----IHSGFMSINQTCRQCGGTGHIIT--NWC 283
           C+ C G G   G   +KC  C G G++     +          C  C GTG II   + C
Sbjct: 5   CKECEGRGGKKG-AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRC 63

Query: 284 KSCKGARVVK 293
           KSC G +V  
Sbjct: 64  KSCNGKKVEN 73

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 7/77 (9%)

Query: 230 CEACGGEGVP---PGVKPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHIITNW 282
           CE+C  +G P      +  +C+ C G   E            +   C             
Sbjct: 14  CESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPT 73

Query: 283 CKSCKGARVVKGSKSVK 299
           C+SC        S   K
Sbjct: 74  CESCHDDGRTSASVLKK 90

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 3/69 (4%)

Query: 272 CGGTGHIITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLY 331
             G         K   G         + + + PG      +     G  +P   +   L 
Sbjct: 15  FVGKKKSFKIGRKGPHG---ASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71

Query: 332 VTIKVREDP 340
             I+ +  P
Sbjct: 72  FVIQEKSHP 80

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 344 REGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFS 403
           + G +I  +   S+ +   G T ++      + + V PG + GQ++V K +  +  +   
Sbjct: 2   QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDVIP 61

Query: 404 FGDQYVHFNV 413
            GD     + 
Sbjct: 62  -GDVVFIVSE 70

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 296 KSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVRE 338
           K +++ + PG+ + + +         PD   PGD+   +  R 
Sbjct: 31  KILEVHVEPGMKDGQRIVFKGEADQAPDV-IPGDVVFIVSERP 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	448
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.91
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.9
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	99.84
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.8
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.77
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.67
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.66
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.65
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	99.64
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	99.62
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.62
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.57
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	99.38
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	99.28
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.8
d1c3ga2	90	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	98.72
d1nlta2	80	Mitochondrial protein import protein mas5 (Hsp40,	98.64
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.83
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.23
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	95.64

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.6e-25  Score=180.33  Aligned_cols=88  Identities=26%  Similarity=0.435  Sum_probs=82.6

Q ss_pred             cccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCCCCCCcEEEEcCCCccCC-CCCCCCcEEEEEEEECCCC
Q 013163          341 VFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPGTQPGQKVVLKNKGIKTR-NSFSFGDQYVHFNVSIPTN  418 (448)
Q Consensus       341 ~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g~~~g~~~~l~g~G~p~~-~~~~~GDL~V~~~V~~P~~  418 (448)
                      .|+|+|+||+++++||+.||++|++++|+|+||+ +.+++|+++++|++++|+|+|||.. +++.+|||||+|+|.+|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            4999999999999999999999999999999995 6899999999999999999999975 4457899999999999999


Q ss_pred             CCHHHHHHHH
Q 013163          419 LTQRQRELIE  428 (448)
Q Consensus       419 ls~~q~~ll~  428 (448)
                      ||++|+++||
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999999875

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.2e-24  Score=169.16  Aligned_cols=73  Identities=58%  Similarity=0.934  Sum_probs=69.4

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV  160 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  160 (448)
                      .+|||+||||+++||.+|||+|||+|+++||||+++++++++++|++|++||+||+||.+|+.||+||+.+++
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e   74 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence            4799999999999999999999999999999999998889999999999999999999999999999987664

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-23  Score=162.00  Aligned_cols=73  Identities=45%  Similarity=0.843  Sum_probs=69.0

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEAFV  160 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~~~  160 (448)
                      |.+|||+||||+++||.+||++|||++++++|||++. ++++.++|+.|++||+||+||.+|+.||++|++++.
T Consensus         1 m~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~-~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~   73 (77)
T d1hdja_           1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK   73 (77)
T ss_dssp             CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred             CCCChHHHcCCCCCcCHHHHHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            4689999999999999999999999999999999987 478889999999999999999999999999998874

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.4e-21  Score=153.63  Aligned_cols=77  Identities=25%  Similarity=0.589  Sum_probs=72.3

Q ss_pred             cccccCcceEEEEEeCHHHHhcCCeeeeecCCCc-EEEEeCCC--CCCCcEEEEcCCCccCCCCCCCCcEEEEEEEECCC
Q 013163          341 VFRREGANIHVDSVLSVTQAILGGTIQVPTLTGD-VVLKVRPG--TQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVSIPT  417 (448)
Q Consensus       341 ~f~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~-~~l~i~~g--~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~~P~  417 (448)
                      .|+|+|+||+++++|++.||++|++++|+|+||. +.++||++  +++|++++|+|+|||..+.+.+|||||+|+|++|+
T Consensus         1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~Pk   80 (80)
T d1nlta2           1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE   80 (80)
T ss_dssp             SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC
T ss_pred             CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcCC
Confidence            4999999999999999999999999999999996 57888887  99999999999999988777899999999999996

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=8.4e-21  Score=153.45  Aligned_cols=70  Identities=31%  Similarity=0.604  Sum_probs=64.1

Q ss_pred             CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHhhhccccccccccccc
Q 013163           86 MSARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDD------PEAEKKFQEVSKAYEVLKDDEKRSVYDQVG  155 (448)
Q Consensus        86 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g  155 (448)
                      .+.+|||+||||+++|+.+|||+||++|+++||||+++.+      ++++++|+.|++||++|+||.+|+.||...
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            4568999999999999999999999999999999998764      458899999999999999999999999753

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.77  E-value=1.8e-20  Score=157.08  Aligned_cols=67  Identities=27%  Similarity=0.459  Sum_probs=60.9

Q ss_pred             ccCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhcccccccccccccccc
Q 013163           88 ARDYYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVGHEA  158 (448)
Q Consensus        88 ~~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~~~  158 (448)
                      ..+||+||||+++|  +.++||+|||+||++||||++++    .++|++|++||+||+||.+|+.||.++...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh----HHHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            46899999999999  78899999999999999999974    257999999999999999999999988643

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.67  E-value=8.6e-18  Score=130.63  Aligned_cols=64  Identities=17%  Similarity=0.279  Sum_probs=58.1

Q ss_pred             ccCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhhhccccccccccccc
Q 013163           88 ARDYYDVLGVNKNA--TASEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDEKRSVYDQVG  155 (448)
Q Consensus        88 ~~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g  155 (448)
                      ..+||+||||++++  +.++||+|||+++++||||++.+    +++|++|++||++|+|+.+|..||.-+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~----~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC----HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            47899999999988  99999999999999999999853    357999999999999999999999643

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.6e-17  Score=128.83  Aligned_cols=64  Identities=19%  Similarity=0.409  Sum_probs=57.1

Q ss_pred             CchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHhhhccccccccccc
Q 013163           90 DYYDVLGVNKN--ATASEIKKAYYGLAKKLHPDTNKDDP-----EAEKKFQEVSKAYEVLKDDEKRSVYDQ  153 (448)
Q Consensus        90 d~y~iLgv~~~--a~~~eIk~ayr~la~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~yd~  153 (448)
                      |||++|||+++  ++.+|||+|||+++++||||++.+.+     .+++.|+.|++||++|+||.+|+.|+.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            79999999985  45899999999999999999976542     377899999999999999999999974

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-17  Score=131.19  Aligned_cols=67  Identities=24%  Similarity=0.282  Sum_probs=59.2

Q ss_pred             CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHhhhcccccccccccccc
Q 013163           87 SARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP-EAEKKFQEVSKAYEVLKDDEKRSVYDQVGH  156 (448)
Q Consensus        87 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~~yd~~g~  156 (448)
                      ..+++|+||+|+.+||.+|||+|||+|+++||||+|++++ .|+++|+.|++||++|++   +..||++..
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            3479999999999999999999999999999999999875 589999999999999975   566666553

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=6e-17  Score=126.36  Aligned_cols=78  Identities=37%  Similarity=0.891  Sum_probs=74.0

Q ss_pred             cceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEeeeccccCCCeEEec
Q 013163          217 GCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIITNWCKSCKGARVVKG  294 (448)
Q Consensus       217 G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~  294 (448)
                      |++++|.+++.+.|+.|+|+|..++..+.+|+.|+|+|++..++|+++++.+|+.|+|+|+++.++|+.|+|.+++++
T Consensus         1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k   78 (79)
T d1exka_           1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER   78 (79)
T ss_dssp             CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred             CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCCCCCCCCCceEeec
Confidence            678999999999999999999999988999999999999988899999999999999999999999999999998875

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=2.5e-16  Score=123.16  Aligned_cols=80  Identities=16%  Similarity=0.310  Sum_probs=68.1

Q ss_pred             CccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163          201 QDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT  280 (448)
Q Consensus       201 ~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  280 (448)
                      +++.+.|.|||+|+|+|+++.+.+.+..                                           |.|.+    
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~-------------------------------------------~~g~~----   33 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG-------------------------------------------PHGAS----   33 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEE-------------------------------------------TTTEE----
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceec-------------------------------------------ccCCC----
Confidence            3678899999999999999998876431                                           12211    


Q ss_pred             eeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecc
Q 013163          281 NWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDP  340 (448)
Q Consensus       281 ~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~  340 (448)
                                   +.+++.|+||||+++|++|+|+|+|++.+.++.+|||+|+|++++||
T Consensus        34 -------------~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP   80 (80)
T d1c3ga1          34 -------------EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP   80 (80)
T ss_dssp             -------------EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred             -------------ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence                         35789999999999999999999999998878899999999999997

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=5.5e-17  Score=131.60  Aligned_cols=64  Identities=22%  Similarity=0.452  Sum_probs=58.8

Q ss_pred             ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHhhhccccccccc
Q 013163           88 ARDYYDVLGVNKNATASEIKKAYYGLAKKLHPDTNKDDP---EAEKKFQEVSKAYEVLKDDEKRSVY  151 (448)
Q Consensus        88 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~---~a~~~f~~i~~Ay~~L~d~~~R~~y  151 (448)
                      ..++|++||++..+|.+|||+|||+++++||||++++++   .|++.|+.|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            357899999999999999999999999999999987653   3788999999999999999999998

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.2e-15  Score=115.91  Aligned_cols=73  Identities=22%  Similarity=0.423  Sum_probs=65.5

Q ss_pred             cCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeE
Q 013163          198 MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGH  277 (448)
Q Consensus       198 ~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  277 (448)
                      .+|.|+.+.|.|||+|+|.|+++++.+.                                                    
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~----------------------------------------------------   29 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALN----------------------------------------------------   29 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEE----------------------------------------------------
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeec----------------------------------------------------
Confidence            5789999999999999999999877542                                                    


Q ss_pred             EEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCCCCCCccEEEEEEEEecc
Q 013163          278 IITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPDGNQPGDLYVTIKVREDP  340 (448)
Q Consensus       278 ~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h~  340 (448)
                                       .+.++|+||||+++|++|+|+|+|++.++ +.+|||+|+|+++||+
T Consensus        30 -----------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~-~~~GDl~v~i~~~pHk   74 (74)
T d1nlta1          30 -----------------RKILEVHVEPGMKDGQRIVFKGEADQAPD-VIPGDVVFIVSERPHK   74 (74)
T ss_dssp             -----------------EEEEEEEECTTCCTTCEEEETTCSCCCTT-CBCCCEEEEEEECCCS
T ss_pred             -----------------CccEEEEecccccCCeEEEecCCcCCCCC-CCCCCEEEEEEecCCC
Confidence                             35789999999999999999999999874 7799999999999995

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=3e-13  Score=103.64  Aligned_cols=70  Identities=20%  Similarity=0.290  Sum_probs=64.2

Q ss_pred             ccCcceEEEEEeCHHHHhcCCeeeeecCCCcEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEE
Q 013163          344 REGANIHVDSVLSVTQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVS  414 (448)
Q Consensus       344 R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~  414 (448)
                      |+|.|++++++|||.||++|.++.|++..+.+.|+||+|+++|++++++|+|.+..+ +..|||+|++++.
T Consensus         2 rkg~di~~~l~isleea~~G~~~~~~~~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~-~~~GDl~v~i~~~   71 (74)
T d1nlta1           2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPD-VIPGDVVFIVSER   71 (74)
T ss_dssp             CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT-CBCCCEEEEEEEC
T ss_pred             CCCCCEEEEEEecHHHHHhhcccceeecCccEEEEecccccCCeEEEecCCcCCCCC-CCCCCEEEEEEec
Confidence            679999999999999999999999998777889999999999999999999998653 4689999999975

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=9.3e-13  Score=100.82  Aligned_cols=68  Identities=37%  Similarity=0.869  Sum_probs=56.8

Q ss_pred             eeccCCCCCCCCCCCCCccccCcCCCCCCceEE--eecce--eeeEecccCCceeEEEe--eeccccCCCeEEec
Q 013163          226 TELPCEACGGEGVPPGVKPEKCRRCKGSGMESI--HSGFM--SINQTCRQCGGTGHIIT--NWCKSCKGARVVKG  294 (448)
Q Consensus       226 ~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~--~~g~~--~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~  294 (448)
                      +.++|+.|+|+|..++. ..+|+.|+|+|++..  +.|++  ++..+|+.|+|+|+++.  ++|+.|+|.++++|
T Consensus         1 r~v~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E   74 (74)
T d1nlta3           1 KQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE   74 (74)
T ss_dssp             EEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             CccCCcCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence            46889999999998775 578999999999763  45554  56778999999999874  68999999998864

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=5.7e-09  Score=80.49  Aligned_cols=68  Identities=16%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             cceEEEEEeCHHHHhcCCeeeee----cCCC-----cEEEEeCCCCCCCcEEEEcCCCccCCCCCCCCcEEEEEEEE
Q 013163          347 ANIHVDSVLSVTQAILGGTIQVP----TLTG-----DVVLKVRPGTQPGQKVVLKNKGIKTRNSFSFGDQYVHFNVS  414 (448)
Q Consensus       347 ~DL~~~~~Isl~eAllG~~~~v~----tldG-----~~~l~i~~g~~~g~~~~l~g~G~p~~~~~~~GDL~V~~~V~  414 (448)
                      .||.+++.|||.||..|++..|.    ..+|     .+.|.||||+++|++++++|+|....+....|||+|.++++
T Consensus         1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~   77 (80)
T d1c3ga1           1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEK   77 (80)
T ss_dssp             CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEEC
T ss_pred             CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeC
Confidence            47899999999999999976554    3455     25689999999999999999999865555689999999885

>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=3.4e-09  Score=83.65  Aligned_cols=81  Identities=25%  Similarity=0.317  Sum_probs=66.4

Q ss_pred             cCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeE
Q 013163          198 MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGH  277 (448)
Q Consensus       198 ~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  277 (448)
                      +.|.|+.+.++|+|.||+.|+++++..-                                                    
T Consensus         4 R~G~DL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (90)
T d1c3ga2           4 RDGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------   31 (90)
T ss_dssp             EETTEEEEEECCBHHHHHHCEEEEEECS----------------------------------------------------
T ss_pred             EeCCeEEEEEEeCHHHHhcCCeEEEecc----------------------------------------------------
Confidence            3688999999999999999998776421                                                    


Q ss_pred             EEeeeccccCCCeEEecceEEEEEecCCCCCCceeEEeccCCCCCC-CCCCccEEEEEEEEecccccccC
Q 013163          278 IITNWCKSCKGARVVKGSKSVKLDIMPGVDNNETLKVFRSGGADPD-GNQPGDLYVTIKVREDPVFRREG  346 (448)
Q Consensus       278 ~~~~~C~~C~G~g~v~~~k~l~V~Ip~G~~~G~~i~~~g~G~~~~~-g~~~GDL~v~i~v~~h~~f~R~G  346 (448)
                                      ..+.++|+||+|+++|++++++|+|.+... .+..|||+|+++|.-+..+..+.
T Consensus        32 ----------------dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls~~q   85 (90)
T d1c3ga2          32 ----------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQ   85 (90)
T ss_dssp             ----------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTH
T ss_pred             ----------------cccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCCHHH
Confidence                            246788999999999999999999997653 35689999999999776665543

>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.5e-08  Score=77.95  Aligned_cols=74  Identities=18%  Similarity=0.328  Sum_probs=61.6

Q ss_pred             cCCCccccccccchhhhhccceeeeeeeeeccCCCCCCCCCCCCCccccCcCCCCCCceEEeecceeeeEecccCCceeE
Q 013163          198 MSGQDVKVAVELSFMEAVQGCTKTVTFQTELPCEACGGEGVPPGVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGH  277 (448)
Q Consensus       198 ~~g~di~~~l~vsl~e~~~G~~k~i~~~~~~~C~~C~GsG~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~  277 (448)
                      +.|.|+.+.++|+|.||+.|+++.+..-                                                    
T Consensus         4 R~G~dL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------   31 (80)
T d1nlta2           4 RDGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------   31 (80)
T ss_dssp             EETTEEEEEEEEEHHHHHHCBCCEEECS----------------------------------------------------
T ss_pred             EeCCEEEEEEEeCHHHHhCCCEEEEEec----------------------------------------------------
Confidence            3578999999999999999988766521                                                    


Q ss_pred             EEeeeccccCCCeEEecceEEEEEecCC--CCCCceeEEeccCCCCCCCCCCccEEEEEEEEec
Q 013163          278 IITNWCKSCKGARVVKGSKSVKLDIMPG--VDNNETLKVFRSGGADPDGNQPGDLYVTIKVRED  339 (448)
Q Consensus       278 ~~~~~C~~C~G~g~v~~~k~l~V~Ip~G--~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~v~~h  339 (448)
                                      ..+.++|.||++  +++|++++++|+|.+...++..|||+|+++|+-+
T Consensus        32 ----------------dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~P   79 (80)
T d1nlta2          32 ----------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDP   79 (80)
T ss_dssp             ----------------SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECC
T ss_pred             ----------------CcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcC
Confidence                            135667778877  9999999999999988877789999999999743

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=2.1e-06  Score=65.51  Aligned_cols=46  Identities=26%  Similarity=0.691  Sum_probs=36.0

Q ss_pred             eccCCCCCCCCCCC-----CCccccCcCCCCCCceEEeecceeeeEecccCCceeEEEe
Q 013163          227 ELPCEACGGEGVPP-----GVKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHIIT  280 (448)
Q Consensus       227 ~~~C~~C~GsG~~~-----~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~  280 (448)
                      ...|+.|+|+|...     .....+|+.|+|+|+++        ..+|..|+|+|.+.+
T Consensus        28 ~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i--------~~~C~~C~G~G~v~k   78 (79)
T d1exka_          28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI--------KDPCNKCHGHGRVER   78 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC--------SSBCGGGTTSSEEEC
T ss_pred             ceeCCCccceeEEEEecccceeeEECcccCcceeEC--------CCCCCCCCCceEeec
Confidence            45799999999542     22345899999999876        568999999998764

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=3.7e-05  Score=57.53  Aligned_cols=46  Identities=24%  Similarity=0.549  Sum_probs=34.6

Q ss_pred             ccCCCCCCCCCCCC---------CccccCcCCCCCCceEEeecceeeeEecccCCceeEEE
Q 013163          228 LPCEACGGEGVPPG---------VKPEKCRRCKGSGMESIHSGFMSINQTCRQCGGTGHII  279 (448)
Q Consensus       228 ~~C~~C~GsG~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  279 (448)
                      ..|+.|+|+|....         ....+|+.|+|+|.++.      ...+|..|+|+|.+.
T Consensus        19 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~------~~~~C~~C~G~g~v~   73 (74)
T d1nlta3          19 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID------PKDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC------TTSBCSSSTTSCEEE
T ss_pred             CCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC------CCCCCCCCCCeeEeC
Confidence            46999999996521         12458999999998652      246899999999654

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=95.64  E-value=0.00013  Score=56.26  Aligned_cols=64  Identities=20%  Similarity=0.382  Sum_probs=48.1

Q ss_pred             cCCCCCCCCCCCCC---ccccCcCCCCCCceEEee----cceeeeEecccCCceeEEEeeeccccCCCeEE
Q 013163          229 PCEACGGEGVPPGV---KPEKCRRCKGSGMESIHS----GFMSINQTCRQCGGTGHIITNWCKSCKGARVV  292 (448)
Q Consensus       229 ~C~~C~GsG~~~~~---~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  292 (448)
                      .|..|+|.|.....   .+..|..|+|+|......    +....-..|..|+|.|..+...|..|++.+.+
T Consensus        13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            69999999865433   245799999999865322    23344577888999998888999999998754