Citrus Sinensis ID: 013164

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
cccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccEEEcccccEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
ccccEEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccEEEcccccEEEEcccEccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEccccccccccccccccc
mdnsfvvlpkqrpqshgvpprprgssaqseasqsgkamdESFVVIYKsesasdgggphipppeggtngpmqpnnsgfhSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTnvlndafpiwhdgefgtinnfrlgrlpkipvewDEINAAWGQACLLLHTMCqyfrpkfpyrikiipmgsyprimdsnnntyelfgpvnlfwsTRYDKAMTLFLSCLKDFAEfanskdqennippdkcfklpykiendkvenySITQSFNKQENWTKALKYTLCNLKWALFWFVgntnfqpvsamsspaeVSAVGSLYAkrgadlksvgrnlskp
mdnsfvvlpkqrpqshgvpprprgssAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSqtqveqplCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFanskdqennippdkcFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAkrgadlksvgrnlskp
MDNSFVVLPKQRPQSHGVPPRPRgssaqseasqsgKAMDESFVVIYKSESASDgggphipppeggTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLkeklkieeeerkleaaieeteKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
******************************************VVI********************************HSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL**********************************************FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFAN*********PDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQP**********************************
***SFVV*****************************************************************************KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEAC****************************************************************RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFA*************CFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFV*****************************************
*************************************MDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
*********K******************************S*****K*****************************FHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT**************************************
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MDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query448 2.2.26 [Sep-21-2011]
Q9M367517 Beclin-1-like protein OS= yes no 0.975 0.845 0.804 0.0
Q54JI9855 Beclin-1-like protein B O yes no 0.694 0.363 0.389 1e-60
Q6GP52445 Beclin-1 OS=Xenopus laevi N/A no 0.857 0.862 0.326 3e-59
Q4A1L3445 Beclin-1 OS=Xenopus tropi yes no 0.857 0.862 0.326 6e-59
Q5ZKS6447 Beclin-1 OS=Gallus gallus yes no 0.848 0.850 0.328 8e-57
O88597448 Beclin-1 OS=Mus musculus yes no 0.845 0.845 0.328 9e-57
Q91XJ1448 Beclin-1 OS=Rattus norveg yes no 0.845 0.845 0.328 1e-56
Q4A1L4448 Beclin-1 OS=Bos taurus GN yes no 0.845 0.845 0.328 3e-56
Q14457450 Beclin-1 OS=Homo sapiens yes no 0.850 0.846 0.325 4e-56
Q4A1L5448 Beclin-1 OS=Sus scrofa GN yes no 0.841 0.841 0.329 4e-56
>sp|Q9M367|BECN1_ARATH Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2 Back     alignment and function desciption
 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/440 (80%), Positives = 387/440 (87%), Gaps = 3/440 (0%)

Query: 1   MDNSFVVLPKQRP-QSHGVPPRPRG-SSAQSEASQSGKAMDESFVVIYKSESASDGGGPH 58
           MDNSFVVLP+ +P QS G+PPRPRG SS Q +A+QSGKAM+ESFVV+YKSE  SD GG H
Sbjct: 69  MDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEESFVVVYKSEPVSDSGGSH 128

Query: 59  IPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVD 118
               E G NGP+  N SGF++TI VL RAF+IA +QTQVEQPLCLECMRVLSDKL+KEV+
Sbjct: 129 NLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLSDKLEKEVE 188

Query: 119 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 178
           DVTRD+EAYEAC+QRLEGE +DVLSEADFLKEK KIEEEERKL AAIEETEKQNAEVN +
Sbjct: 189 DVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERKLVAAIEETEKQNAEVNHQ 248

Query: 179 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 238
           LKELE K  RF ELE+RYWQEFNNFQFQLIAHQEERDAI +KIEVSQAHLELL +TNVL 
Sbjct: 249 LKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLELLNKTNVLI 308

Query: 239 DAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKI 298
           DAFPI +DGEFGTINNFRLGRLP I VEWDEINAAWGQACLLLHTMC YFRPKF  ++KI
Sbjct: 309 DAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRPKFQCQVKI 368

Query: 299 IPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP 358
            PMGSYPRI+DSNN TYELFGPVNLFWSTRYDKAMTL+L CLKDFA+FANSKDQENNIPP
Sbjct: 369 QPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCLKDFADFANSKDQENNIPP 428

Query: 359 DKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSA- 417
           D C  LPYKIE DKV  YSITQSFNKQE+WTKALKYTLCNLKWAL+WFVGNTNFQP+SA 
Sbjct: 429 DNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLKWALYWFVGNTNFQPLSAT 488

Query: 418 MSSPAEVSAVGSLYAKRGAD 437
           +S P+ +SA GSLYAKRG D
Sbjct: 489 VSLPSNISAAGSLYAKRGPD 508

Arabidopsis thaliana (taxid: 3702)
>sp|Q54JI9|BECNB_DICDI Beclin-1-like protein B OS=Dictyostelium discoideum GN=atg6B PE=3 SV=1 Back     alignment and function description
>sp|Q6GP52|BECN1_XENLA Beclin-1 OS=Xenopus laevis GN=becn1 PE=2 SV=1 Back     alignment and function description
>sp|Q4A1L3|BECN1_XENTR Beclin-1 OS=Xenopus tropicalis GN=becn1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZKS6|BECN1_CHICK Beclin-1 OS=Gallus gallus GN=BECN1 PE=2 SV=1 Back     alignment and function description
>sp|O88597|BECN1_MOUSE Beclin-1 OS=Mus musculus GN=Becn1 PE=1 SV=3 Back     alignment and function description
>sp|Q91XJ1|BECN1_RAT Beclin-1 OS=Rattus norvegicus GN=Becn1 PE=1 SV=1 Back     alignment and function description
>sp|Q4A1L4|BECN1_BOVIN Beclin-1 OS=Bos taurus GN=BECN1 PE=2 SV=1 Back     alignment and function description
>sp|Q14457|BECN1_HUMAN Beclin-1 OS=Homo sapiens GN=BECN1 PE=1 SV=2 Back     alignment and function description
>sp|Q4A1L5|BECN1_PIG Beclin-1 OS=Sus scrofa GN=BECN1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
73587480505 beclin 1 protein [Malus x domestica] 0.982 0.871 0.843 0.0
225454518522 PREDICTED: beclin 1 protein [Vitis vinif 1.0 0.858 0.854 0.0
224067974516 predicted protein [Populus trichocarpa] 0.988 0.858 0.849 0.0
351724517509 beclin 1 protein [Glycine max] gi|735874 0.982 0.864 0.833 0.0
357456733517 Beclin 1 protein [Medicago truncatula] g 0.979 0.849 0.849 0.0
255564727523 Beclin-1, putative [Ricinus communis] gi 1.0 0.856 0.836 0.0
357456731 567 Beclin 1 protein [Medicago truncatula] g 0.979 0.774 0.75 0.0
356508412509 PREDICTED: beclin-1-like protein-like is 0.982 0.864 0.835 0.0
449526106509 PREDICTED: beclin-1-like protein-like [C 0.982 0.864 0.827 0.0
449445541509 PREDICTED: beclin-1-like protein-like [C 0.982 0.864 0.825 0.0
>gi|73587480|emb|CAJ27522.1| beclin 1 protein [Malus x domestica] Back     alignment and taxonomy information
 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/446 (84%), Positives = 408/446 (91%), Gaps = 6/446 (1%)

Query: 1   MDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIP 60
           MDNSFVVLP+QR Q  GVPPRPRG +  +    SG AMDESFVV+ KSES++DGGG H+P
Sbjct: 64  MDNSFVVLPQQRAQ--GVPPRPRGGAVNT--GHSGNAMDESFVVVNKSESSADGGGAHLP 119

Query: 61  PPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDV 120
            P+GG NGP+QPNNSGFHSTI++LKRAFEIA++QTQVEQPLC+ECMRVLSDKLDKEV+DV
Sbjct: 120 SPDGGPNGPLQPNNSGFHSTISLLKRAFEIASTQTQVEQPLCVECMRVLSDKLDKEVEDV 179

Query: 121 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 180
            RDI+AYEACL+RLEGE R+VLSE DFLKEKLKIEEE+RKLEA IEE EKQNAEVN ELK
Sbjct: 180 NRDIKAYEACLKRLEGETREVLSETDFLKEKLKIEEEQRKLEAEIEEMEKQNAEVNNELK 239

Query: 181 ELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 240
            LELKS RFKELEE+YW +FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA
Sbjct: 240 GLELKSSRFKELEEQYWHKFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 299

Query: 241 FPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIP 300
           FPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKF YRIKI+P
Sbjct: 300 FPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFQYRIKILP 359

Query: 301 MGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDK 360
           MGSYPRIMD+NNNTYELFGPVNLFWSTRYDKAMTLFL+CLKDFAEFANSKDQENNIPP+K
Sbjct: 360 MGSYPRIMDNNNNTYELFGPVNLFWSTRYDKAMTLFLTCLKDFAEFANSKDQENNIPPEK 419

Query: 361 CFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAM-- 418
            FKLPYKIENDKVE YSITQSFNKQENWTKALKYTLCNLKWAL+WFVGNTNFQP+SA+  
Sbjct: 420 RFKLPYKIENDKVETYSITQSFNKQENWTKALKYTLCNLKWALYWFVGNTNFQPLSAVVS 479

Query: 419 SSPAEVSAVGSLYAKRGADLKSVGRN 444
           SS AEVS  GS Y++R  + KS  +N
Sbjct: 480 SSHAEVSGTGSSYSRRSTNSKSEFQN 505

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225454518|ref|XP_002277370.1| PREDICTED: beclin 1 protein [Vitis vinifera] gi|297745431|emb|CBI40511.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224067974|ref|XP_002302626.1| predicted protein [Populus trichocarpa] gi|222844352|gb|EEE81899.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351724517|ref|NP_001238340.1| beclin 1 protein [Glycine max] gi|73587474|emb|CAJ27519.1| beclin 1 protein [Glycine max] Back     alignment and taxonomy information
>gi|357456733|ref|XP_003598647.1| Beclin 1 protein [Medicago truncatula] gi|355487695|gb|AES68898.1| Beclin 1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255564727|ref|XP_002523358.1| Beclin-1, putative [Ricinus communis] gi|223537446|gb|EEF39074.1| Beclin-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357456731|ref|XP_003598646.1| Beclin 1 protein [Medicago truncatula] gi|355487694|gb|AES68897.1| Beclin 1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508412|ref|XP_003522951.1| PREDICTED: beclin-1-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449526106|ref|XP_004170055.1| PREDICTED: beclin-1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449445541|ref|XP_004140531.1| PREDICTED: beclin-1-like protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
TAIR|locus:2076715517 ATG6 "AT3G61710" [Arabidopsis 0.975 0.845 0.731 2.6e-173
MGI|MGI:1891828448 Becn1 "beclin 1, autophagy rel 0.683 0.683 0.358 3.8e-53
UNIPROTKB|Q14457450 BECN1 "Beclin-1" [Homo sapiens 0.683 0.68 0.355 6.3e-53
UNIPROTKB|Q4A1L4448 BECN1 "Beclin-1" [Bos taurus ( 0.683 0.683 0.355 8e-53
UNIPROTKB|E2RNW7463 AARSD1 "Uncharacterized protei 0.683 0.660 0.355 8e-53
UNIPROTKB|Q4A1L5448 BECN1 "Beclin-1" [Sus scrofa ( 0.683 0.683 0.355 8e-53
UNIPROTKB|Q5R878450 BECN1 "Beclin-1" [Pongo abelii 0.683 0.68 0.355 8e-53
UNIPROTKB|F1S1F6448 BECN1 "Beclin-1" [Sus scrofa ( 0.683 0.683 0.355 2.1e-52
UNIPROTKB|Q6GP52445 becn1 "Beclin-1" [Xenopus laev 0.683 0.687 0.355 2.7e-52
RGD|620190448 Becn1 "beclin 1, autophagy rel 0.683 0.683 0.355 2.7e-52
TAIR|locus:2076715 ATG6 "AT3G61710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1684 (597.9 bits), Expect = 2.6e-173, P = 2.6e-173
 Identities = 322/440 (73%), Positives = 353/440 (80%)

Query:     1 MDNSFVVLPKQRP-QSHGVPPRPRXXXXXX-XXXXXXKAMDESFVVIYKSESASDXXXXX 58
             MDNSFVVLP+ +P QS G+PPRPR             KAM+ESFVV+YKSE  SD     
Sbjct:    69 MDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEESFVVVYKSEPVSDSGGSH 128

Query:    59 XXXXXXXTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVD 118
                     NGP+  N SGF++TI VL RAF+IA +QTQVEQPLCLECMRVLSDKL+KEV+
Sbjct:   129 NLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLSDKLEKEVE 188

Query:   119 DVTRDIEAYEACLQRLEGEARDVLSEADFLXXXXXXXXXXXXXXXXXXXXXKQNAEVNAE 178
             DVTRD+EAYEAC+QRLEGE +DVLSEADFL                     KQNAEVN +
Sbjct:   189 DVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERKLVAAIEETEKQNAEVNHQ 248

Query:   179 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 238
             LKELE K  RF ELE+RYWQEFNNFQFQLIAHQEERDAI +KIEVSQAHLELL +TNVL 
Sbjct:   249 LKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLELLNKTNVLI 308

Query:   239 DAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKI 298
             DAFPI +DGEFGTINNFRLGRLP I VEWDEINAAWGQACLLLHTMC YFRPKF  ++KI
Sbjct:   309 DAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRPKFQCQVKI 368

Query:   299 IPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP 358
              PMGSYPRI+DSNN TYELFGPVNLFWSTRYDKAMTL+L CLKDFA+FANSKDQENNIPP
Sbjct:   369 QPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCLKDFADFANSKDQENNIPP 428

Query:   359 DKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSA- 417
             D C  LPYKIE DKV  YSITQSFNKQE+WTKALKYTLCNLKWAL+WFVGNTNFQP+SA 
Sbjct:   429 DNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLKWALYWFVGNTNFQPLSAT 488

Query:   418 MSSPAEVSAVGSLYAKRGAD 437
             +S P+ +SA GSLYAKRG D
Sbjct:   489 VSLPSNISAAGSLYAKRGPD 508
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0006914 "autophagy" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0000045 "autophagic vacuole assembly" evidence=IGI
GO:0000407 "pre-autophagosomal structure" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=IGI
GO:0009846 "pollen germination" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IEP
MGI|MGI:1891828 Becn1 "beclin 1, autophagy related" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q14457 BECN1 "Beclin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4A1L4 BECN1 "Beclin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNW7 AARSD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q4A1L5 BECN1 "Beclin-1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R878 BECN1 "Beclin-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1F6 BECN1 "Beclin-1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GP52 becn1 "Beclin-1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|620190 Becn1 "beclin 1, autophagy related" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R878BECN1_PONABNo assigned EC number0.3250.85040.8466yesno
Q91XJ1BECN1_RATNo assigned EC number0.32870.84590.8459yesno
Q9M367BECN1_ARATHNo assigned EC number0.80450.97540.8452yesno
Q5ZKS6BECN1_CHICKNo assigned EC number0.32800.84820.8501yesno
Q14457BECN1_HUMANNo assigned EC number0.3250.85040.8466yesno
Q4A1L5BECN1_PIGNo assigned EC number0.32950.84150.8415yesno
Q4A1L3BECN1_XENTRNo assigned EC number0.32640.85710.8629yesno
O88597BECN1_MOUSENo assigned EC number0.32870.84590.8459yesno
Q4A1L4BECN1_BOVINNo assigned EC number0.32870.84590.8459yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
pfam04111356 pfam04111, APG6, Autophagy protein Apg6 1e-75
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 2e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-05
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 3e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 9e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-04
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.002
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
pfam12325121 pfam12325, TMF_TATA_bd, TATA element modulatory fa 0.002
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.002
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.003
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.003
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.004
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 0.004
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6 Back     alignment and domain information 
 Score =  240 bits (614), Expect = 1e-75
 Identities = 122/356 (34%), Positives = 187/356 (52%), Gaps = 40/356 (11%)

Query: 81  ITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD 140
           +  +   F+I +SQT ++ PLC EC  +L ++LD E+ D  ++ + Y+  L +LE +  +
Sbjct: 2   VKAMTNLFDILSSQTNIDHPLCEECADILLERLDSELRDAEKERDTYKQYLSKLESQNVE 61

Query: 141 VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 200
           + +      E  ++++EE +L   +EE EK++ +++ EL EL+ + ++ +  E +Y +E+
Sbjct: 62  ISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREY 121

Query: 201 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 260
           N F    +  ++   ++  + E S   L+ L++TN+ N  F I H G F TIN  RLGRL
Sbjct: 122 NLFDRNNLQLEDNLQSLELQYEYSLNQLDKLRKTNIFNATFHISHSGPFATINGLRLGRL 181

Query: 261 PKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRI--MDSNNNTYE-- 316
           P + V W EINAAWGQ  LLL  + +     F  R +++P GS+  I  +  N+  Y   
Sbjct: 182 PSVVVPWKEINAAWGQTVLLLAALAKKLGLNFV-RYRLVPFGSHSYIEKLMVNSVEYNNS 240

Query: 317 --------LFGPVNL----------FWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP 358
                   L  PV L          FW T++DKAM  FL CL  F         +     
Sbjct: 241 TTNAPGDWLILPVELDLYFSGGLKFFWDTKFDKAMVAFLDCLSQFTREVEKIATQ----- 295

Query: 359 DKCFKLPYKIENDK-----VEN----YSITQSFNKQENWTKALKYTLCNLKWALFW 405
              F LPY++E++K     VEN    YSI   FN  E WTKALK+ L NLKW L W
Sbjct: 296 ---FLLPYQMESEKGKINDVENSGGSYSIKYQFNSDEQWTKALKFMLTNLKWLLAW 348

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 448
KOG2751447 consensus Beclin-like protein [Signal transduction 100.0
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 100.0
PF10186302 Atg14: UV radiation resistance protein and autopha 99.45
KOG2751447 consensus Beclin-like protein [Signal transduction 99.04
KOG2896377 consensus UV radiation resistance associated prote 98.62
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 97.36
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 97.01
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.85
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.07
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 95.81
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.75
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 95.74
PRK03918 880 chromosome segregation protein; Provisional 95.66
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.62
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.59
PHA02562562 46 endonuclease subunit; Provisional 95.45
KOG0979 1072 consensus Structural maintenance of chromosome pro 95.42
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.41
PRK11637428 AmiB activator; Provisional 95.27
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.07
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 94.98
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 94.9
PRK11637428 AmiB activator; Provisional 94.81
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.78
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.75
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.39
PRK09039343 hypothetical protein; Validated 94.36
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.21
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.09
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 93.99
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.97
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 93.89
PRK03918 880 chromosome segregation protein; Provisional 93.86
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 93.85
KOG0994 1758 consensus Extracellular matrix glycoprotein Lamini 93.81
PF13851201 GAS: Growth-arrest specific micro-tubule binding 93.76
PRK02224880 chromosome segregation protein; Provisional 93.74
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 93.65
PHA02562562 46 endonuclease subunit; Provisional 93.62
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 93.61
PRK02224880 chromosome segregation protein; Provisional 93.54
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.34
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 93.31
PRK10884206 SH3 domain-containing protein; Provisional 93.14
COG2433652 Uncharacterized conserved protein [Function unknow 93.11
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 93.08
PRK04863 1486 mukB cell division protein MukB; Provisional 93.06
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 92.89
COG4026290 Uncharacterized protein containing TOPRIM domain, 92.87
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 92.84
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 92.8
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 92.8
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 92.72
COG4372499 Uncharacterized protein conserved in bacteria with 92.56
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 92.52
PRK04778569 septation ring formation regulator EzrA; Provision 92.46
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 92.45
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 92.19
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 92.13
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 92.08
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 91.94
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 91.93
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 91.83
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 91.81
PRK10884206 SH3 domain-containing protein; Provisional 91.73
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 91.71
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 91.7
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 91.67
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 91.63
COG4985289 ABC-type phosphate transport system, auxiliary com 91.45
PRK04863 1486 mukB cell division protein MukB; Provisional 91.44
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 91.35
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 91.22
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 91.2
PF1528525 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 91.19
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 91.19
KOG1962216 consensus B-cell receptor-associated protein and r 90.86
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 90.86
PF00038312 Filament: Intermediate filament protein; InterPro: 90.82
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.79
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 90.75
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.75
TIGR006061311 rad50 rad50. This family is based on the phylogeno 90.65
KOG09961293 consensus Structural maintenance of chromosome pro 90.6
KOG0964 1200 consensus Structural maintenance of chromosome pro 90.58
PRK04778569 septation ring formation regulator EzrA; Provision 90.49
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 90.42
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 90.4
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 90.08
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 90.04
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 90.04
PF00038312 Filament: Intermediate filament protein; InterPro: 90.02
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 89.83
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 89.79
KOG4673 961 consensus Transcription factor TMF, TATA element m 89.62
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 89.58
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 89.48
PRK09039343 hypothetical protein; Validated 89.48
COG2433652 Uncharacterized conserved protein [Function unknow 89.47
TIGR02977219 phageshock_pspA phage shock protein A. Members of 89.47
PRK01156 895 chromosome segregation protein; Provisional 89.46
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 89.38
PRK01156 895 chromosome segregation protein; Provisional 89.35
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 89.33
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 88.96
COG4372499 Uncharacterized protein conserved in bacteria with 88.81
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 88.61
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 88.59
KOG2264 907 consensus Exostosin EXT1L [Signal transduction mec 88.44
KOG2391365 consensus Vacuolar sorting protein/ubiquitin recep 88.4
KOG2072988 consensus Translation initiation factor 3, subunit 88.14
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 88.11
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 88.07
COG5185622 HEC1 Protein involved in chromosome segregation, i 88.03
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 87.92
KOG0288 459 consensus WD40 repeat protein TipD [General functi 87.64
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 87.63
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 87.59
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 87.44
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 87.24
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.18
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 87.04
KOG09331174 consensus Structural maintenance of chromosome pro 86.92
KOG1962216 consensus B-cell receptor-associated protein and r 86.73
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 86.55
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 86.49
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 86.48
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 86.42
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 86.32
KOG09331174 consensus Structural maintenance of chromosome pro 86.2
PRK00409782 recombination and DNA strand exchange inhibitor pr 85.92
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 85.78
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 85.62
PRK11519 719 tyrosine kinase; Provisional 85.31
COG4942420 Membrane-bound metallopeptidase [Cell division and 85.29
PF05700221 BCAS2: Breast carcinoma amplified sequence 2 (BCAS 85.21
COG5185622 HEC1 Protein involved in chromosome segregation, i 85.18
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 85.14
PF05701522 WEMBL: Weak chloroplast movement under blue light; 85.01
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 85.0
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 84.92
KOG0977546 consensus Nuclear envelope protein lamin, intermed 84.61
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 84.4
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 84.35
PF10186302 Atg14: UV radiation resistance protein and autopha 84.2
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 84.07
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 83.88
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 83.87
PRK00409782 recombination and DNA strand exchange inhibitor pr 83.64
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 83.57
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 83.52
PF14662193 CCDC155: Coiled-coil region of CCDC155 83.52
PF1141484 Suppressor_APC: Adenomatous polyposis coli tumour 83.5
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 83.32
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 83.26
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 83.06
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 82.83
KOG3647338 consensus Predicted coiled-coil protein [General f 82.52
PRK10698222 phage shock protein PspA; Provisional 82.48
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 82.48
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 82.46
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 82.35
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 82.25
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 82.07
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 82.02
PF11180192 DUF2968: Protein of unknown function (DUF2968); In 81.82
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 81.71
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 81.69
TIGR02231 525 conserved hypothetical protein. This family consis 81.56
KOG4673 961 consensus Transcription factor TMF, TATA element m 81.41
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 81.4
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 81.32
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 81.26
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 81.23
KOG0971 1243 consensus Microtubule-associated protein dynactin 81.1
KOG0964 1200 consensus Structural maintenance of chromosome pro 80.82
TIGR02231525 conserved hypothetical protein. This family consis 80.81
PRK11281 1113 hypothetical protein; Provisional 80.69
PRK10361475 DNA recombination protein RmuC; Provisional 80.61
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 80.56
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 80.45
PRK13169110 DNA replication intiation control protein YabA; Re 80.41
PF14662193 CCDC155: Coiled-coil region of CCDC155 80.33
PF05278269 PEARLI-4: Arabidopsis phospholipase-like protein ( 80.13
PRK12704520 phosphodiesterase; Provisional 80.1
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 80.05
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-102  Score=791.69  Aligned_cols=396  Identities=53%  Similarity=0.888  Sum_probs=362.2

Q ss_pred             CCCccccccCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCceEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 013164            1 MDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHS   79 (448)
Q Consensus         1 ~d~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~esfv~l~~s~~~~d~~~~~~~~~~~~~~~~~~~~~~~ls~   79 (448)
                      |+.+++|+|.+.+ |..+.|++++++.. ++.. ++.++.++||+.+.+.+..+..+.+-+....+-.+..+.+..++++
T Consensus        37 ~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~  114 (447)
T KOG2751|consen   37 MDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSA  114 (447)
T ss_pred             cchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccceecccCcccccccccccccccccccchhhhhHHHHH
Confidence            6789999998865 99999999988877 5555 8888899999988776665554444444444433455667888999


Q ss_pred             hHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Q 013164           80 TITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEER  159 (448)
Q Consensus        80 ~i~~l~~lFdIlS~~s~iDhPLC~eC~d~Lle~Ld~qle~~~~E~~~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~  159 (448)
                      ++++++++|+|+|+|++||||+|.||++.|++.|+++++.+++|+++|++|+++|+++..+ .+++++.+|++.++.||+
T Consensus       115 ~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~-~~~~~~~~e~~~l~~eE~  193 (447)
T KOG2751|consen  115 TINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQD-VSEEDLLKELKNLKEEEE  193 (447)
T ss_pred             HHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987643 478899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013164          160 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND  239 (448)
Q Consensus       160 ~L~~eL~~lE~e~~~l~~el~~le~e~~~l~~eE~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd  239 (448)
                      +|.++|++++++.++++.++.+++.+..++.++|.+||++||.+++++.++++++++|++++++++.||++|++|||||.
T Consensus       194 ~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~  273 (447)
T KOG2751|consen  194 RLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNA  273 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceEEecCC---ceee
Q 013164          240 AFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNN---NTYE  316 (448)
Q Consensus       240 ~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~y~LvPmGS~SkI~~~~~---~~~~  316 (448)
                      +|||||+|+|||||||||||+|.+||+|+||||||||+||||++|++++|++|. +|+||||||+|+|+....   ..++
T Consensus       274 ~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~-~y~lvp~GshSyI~~~~~~~~~el~  352 (447)
T KOG2751|consen  274 TFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFV-RYRLVPMGSHSYIKKRMVNLPYELP  352 (447)
T ss_pred             eeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccc-eeeeecccchhHHHHhccCCCccch
Confidence            999999999999999999999999999999999999999999999999999999 999999999999986543   4567


Q ss_pred             cc--cCCCCcccccchHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCcccee----eEEecCCCCchhhH
Q 013164          317 LF--GPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENY----SITQSFNKQENWTK  390 (448)
Q Consensus       317 Ly--g~~~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~~dkI~g~----SI~l~~n~~e~WTk  390 (448)
                      +|  |+.+|||++|||+||+|||+||+||++++++++        +.+.+||.|++|+|+|.    +|++.||++++||+
T Consensus       353 l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~--------~~~~lPy~ie~d~i~d~~~~y~i~~~fN~De~WTr  424 (447)
T KOG2751|consen  353 LFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKD--------TSFNLPYDIEKDKLNDPSSSYSIKVQFNSDENWTR  424 (447)
T ss_pred             hhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcC--------cccCCcchhhcccccCCccceeEEeeecchHHHHH
Confidence            77  455899999999999999999999999999886        46999999999999986    69999999999999


Q ss_pred             HHHHHHhhHHHHHHHHhh
Q 013164          391 ALKYTLCNLKWALFWFVG  408 (448)
Q Consensus       391 AlK~lLtNlKwllaw~~~  408 (448)
                      ||||||||+||++|||+.
T Consensus       425 ALkFmLTnlK~~~A~vss  442 (447)
T KOG2751|consen  425 ALKFMLTNLKWLLAWVSS  442 (447)
T ss_pred             HHHHHHhccHHHHHHHhh
Confidence            999999999999999985

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] Back     alignment and domain information
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PRK11519 tyrosine kinase; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only] Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4 Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
4ddp_A210 Crystal Structure Of Beclin 1 Evolutionarily Conser 3e-42
3vp7_A220 Crystal Structure Of The Beta-Alpha Repeated, Autop 4e-15
>pdb|4DDP|A Chain A, Crystal Structure Of Beclin 1 Evolutionarily Conserved Domain(Ecd) Length = 210 Back     alignment and structure 
Iteration: 1

 Score =  169 bits (428), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/207 (42%), Positives = 120/207 (57%), Gaps = 22/207 (10%)
Query: 212 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEIN 271
           +E  ++ +++  +Q  L+ LK+TNV N  F IWH G+FGTINNFRLGRLP +PVEW+EIN
Sbjct: 5   DELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEIN 64
Query: 272 AAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYEL----FGPVNLFWST 327
           AAWGQ  LLLH +      KF  R +++P G++  +    + + EL     G +  FW  
Sbjct: 65  AAWGQTVLLLHALANKMGLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDN 123
Query: 328 RYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYK--IENDKVEN-------YSI 378
           ++D AM  FL C++ F E     +          F LPY+  +E  K+E+       YSI
Sbjct: 124 KFDHAMVAFLDCVQQFKEEVEKGETR--------FCLPYRMDVEKGKIEDTGGSGGSYSI 175
Query: 379 TQSFNKQENWTKALKYTLCNLKWALFW 405
              FN +E WTKALK+ L NLKW L W
Sbjct: 176 KTQFNSEEQWTKALKFMLTNLKWGLAW 202
>pdb|3VP7|A Chain A, Crystal Structure Of The Beta-Alpha Repeated, Autophagy-Specific (Bara) Domain Of Vps30ATG6 Length = 220 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
4ddp_A210 Beclin-1; ECD, autophagy, membrane binding, membra 2e-81
3vp7_A220 Vacuolar protein sorting-associated protein 30; ta 2e-73
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 4e-21
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 5e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 5e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 6e-04
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens} Length = 210 Back     alignment and structure
 Score =  249 bits (637), Expect = 2e-81
 Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 22/211 (10%)

Query: 208 IAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEW 267
           +   +E  ++ +++  +Q  L+ LK+TNV N  F IWH G+FGTINNFRLGRLP +PVEW
Sbjct: 1   LELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEW 60

Query: 268 DEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYEL----FGPVNL 323
           +EINAAWGQ  LLLH +      KF  R +++P G++  +    + + EL     G +  
Sbjct: 61  NEINAAWGQTVLLLHALANKMGLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRF 119

Query: 324 FWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDK---------VE 374
           FW  ++D AM  FL C++ F E             +  F LPY+++ +K           
Sbjct: 120 FWDNKFDHAMVAFLDCVQQFKEEVEKG--------ETRFCLPYRMDVEKGKIEDTGGSGG 171

Query: 375 NYSITQSFNKQENWTKALKYTLCNLKWALFW 405
           +YSI   FN +E WTKALK+ L NLKW L W
Sbjct: 172 SYSIKTQFNSEEQWTKALKFMLTNLKWGLAW 202
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae} Length = 220 Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Length = 96 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
4ddp_A210 Beclin-1; ECD, autophagy, membrane binding, membra 100.0
3vp7_A220 Vacuolar protein sorting-associated protein 30; ta 100.0
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 99.72
2p1l_B31 Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2 98.33
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.36
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 96.29
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.96
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 95.58
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.53
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 95.21
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.14
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.09
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.02
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.84
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 94.28
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.2
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.17
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.1
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 93.03
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 90.79
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 90.68
3bas_A89 Myosin heavy chain, striated muscle/general contro 90.66
2v4h_A110 NF-kappa-B essential modulator; transcription, met 90.4
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 89.32
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 88.49
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 88.25
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 88.2
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 87.86
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 87.28
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 86.82
3bas_A89 Myosin heavy chain, striated muscle/general contro 86.37
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 85.82
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 85.23
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 83.41
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 83.03
2zqm_A117 Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9 82.99
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 82.79
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 81.86
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 81.34
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 81.27
3iox_A 497 AGI/II, PA; alpha helix, PPII helix, supersandwich 80.88
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 80.57
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.5e-80  Score=584.09  Aligned_cols=192  Identities=44%  Similarity=0.900  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 013164          209 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF  288 (448)
Q Consensus       209 ~~~~e~~sl~~q~~~~~~~Ld~L~ktNv~nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l  288 (448)
                      ++++|++|+++|++++++||++|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus         2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l   81 (210)
T 4ddp_A            2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM   81 (210)
T ss_dssp             ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeeecCCCceEEecCC--ceeecccCC--CCcccccchHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 013164          289 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGPV--NLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL  364 (448)
Q Consensus       289 ~~~f~~~y~LvPmGS~SkI~~~~~--~~~~Lyg~~--~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~L  364 (448)
                      +++|+ +|+|+||||+|+|++..+  .+|+|||++  ++|++++||.||+|||+||+||++++++.+        ++++|
T Consensus        82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l  152 (210)
T 4ddp_A           82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL  152 (210)
T ss_dssp             TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred             CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence            99999 999999999999998654  589999754  789999999999999999999999998753        57999


Q ss_pred             ceee--eCCccc-------eeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhC
Q 013164          365 PYKI--ENDKVE-------NYSITQSFNKQENWTKALKYTLCNLKWALFWFVGN  409 (448)
Q Consensus       365 PY~I--~~dkI~-------g~SI~l~~n~~e~WTkAlK~lLtNlKwllaw~~~~  409 (448)
                      ||+|  ++|||+       |+|||+++|++|+||+||||||||+||+|||++..
T Consensus       153 PY~I~~~~dkI~D~~~~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~  206 (210)
T 4ddp_A          153 PYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQ  206 (210)
T ss_dssp             SSCEETTTTEEECTTTTCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCEecCccCCCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999  799996       79999999999999999999999999999999863
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 448
d2ooca1104 a.24.10.6 (A:8-111) Histidine phosphotransferase S 0.004
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104 Back     information, alignment and structure

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 88  FEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF 147
           F         +  +  E + +  ++       +      ++  +  ++G AR V   A  
Sbjct: 5   FAYLEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTVKGAARGV--GAFN 62

Query: 148 LKEKLK-IEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 188
           L E  +  E  +  LE      +    ++ A   E  L+S +
Sbjct: 63  LGEVCERCEAGQESLEGVRTALDAALLDIAAYAHEQALRSLK 104

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00