Citrus Sinensis ID: 013168

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
cccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccc
mrgneteknmeesllipkeslssssttwgVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQaygaqqyqrigTQTYTAIFCLFLVCFPLSFLWIYAGKLLVligqdpqishEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIpicwslvyksglgnlGGALAIGISNWLNVTFLAIYMKFSTacaesrvpiSMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSgllpnpqleTSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISkgrsladnrvvce
mrgneteknmeesllipkeslssssTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKareriskgrsladnrvvce
MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSglgnlggalaigiSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
**************************TWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWE************************
*****************************VLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKA******************
************SLLIPK*********WGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWE*************RSLADNRVVCE
*******************SLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGR**********
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
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MRGNETEKNMEESLLIPKESLSSSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query448 2.2.26 [Sep-21-2011]
Q9SIA4476 MATE efflux family protei no no 0.964 0.907 0.455 1e-117
Q8GXM8476 MATE efflux family protei no no 0.946 0.890 0.458 1e-117
Q9SIA1477 MATE efflux family protei no no 0.959 0.901 0.454 1e-115
Q8RWF5483 MATE efflux family protei no no 0.948 0.879 0.447 1e-113
Q9SIA3476 MATE efflux family protei no no 0.948 0.892 0.435 1e-112
Q9SIA5476 MATE efflux family protei no no 0.946 0.890 0.447 1e-112
Q9LUH2477 MATE efflux family protei no no 0.926 0.870 0.329 5e-70
Q9LUH3469 MATE efflux family protei no no 0.875 0.835 0.344 4e-69
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.868 0.767 0.311 3e-58
Q3V050573 Multidrug and toxin extru yes no 0.899 0.703 0.286 3e-43
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function desciption
 Score =  423 bits (1088), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/479 (45%), Positives = 296/479 (61%), Gaps = 47/479 (9%)

Query: 10  MEESLLIPKESLSSSSTTW--GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLG 67
           MEE  L+  E L     TW  G ++ E+KK   +AAPM AVT++QYLL V+S+M+ GH G
Sbjct: 1   MEEPFLLQDEHLVPCKDTWKSGQVTVELKKVSSLAAPMAAVTIAQYLLPVISVMVAGHNG 60

Query: 68  QLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVC 127
           +L LS  A+A S  +V+GFS+L G+A ALETLCGQAYGA+QY++IGT TY+A      +C
Sbjct: 61  ELQLSGVALATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPIC 120

Query: 128 FPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187
             +S LWIY  KLL+ +GQDP IS   G + +WL+PALFA+A   PL R+  +Q L++P+
Sbjct: 121 VLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPL 180

Query: 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVP 247
              +   L  HIP+CW+ VY  GLG+ G A+AI +S W  V  L+ Y+++S++C ++RV 
Sbjct: 181 LYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVF 240

Query: 248 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTL 307
           +S +    I +FFHF +PSA M+CLEWW FELLIL SGLLPNP+LETSVLS+CL T    
Sbjct: 241 VSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSICLTTASLH 300

Query: 308 YAIPYGLGAAV-----------------------------------------RRVFGYVF 326
           Y IP G+ AAV                                         R + GY F
Sbjct: 301 YVIPGGVAAAVSTRVSNKLGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAF 360

Query: 327 SNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAA 386
           SN K+VVDYV  + PL+CLS I+D    V +GVARG GWQ+I A  N+ A+YL G P   
Sbjct: 361 SNSKEVVDYVANLTPLLCLSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGV 420

Query: 387 ILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRV 445
            L F  +  G+GLW G+  G+  Q ++L  +T   NW++QA KAR+R+      ++NR+
Sbjct: 421 YLAFNRELNGKGLWCGVVVGSAVQAIILAFVTASINWKEQAEKARKRMVS----SENRL 475

Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
224108371482 predicted protein [Populus trichocarpa] 0.959 0.892 0.670 0.0
147787625481 hypothetical protein VITISV_022104 [Viti 0.975 0.908 0.667 1e-179
225424132481 PREDICTED: MATE efflux family protein 5 0.975 0.908 0.667 1e-179
255582915476 TRANSPARENT TESTA 12 protein, putative [ 0.933 0.878 0.681 1e-174
297737740443 unnamed protein product [Vitis vinifera] 0.897 0.907 0.693 1e-173
357444623495 Protein TRANSPARENT TESTA [Medicago trun 0.986 0.892 0.598 1e-169
255582919508 TRANSPARENT TESTA 12 protein, putative [ 0.944 0.832 0.623 1e-168
359472648481 PREDICTED: MATE efflux family protein 5 0.975 0.908 0.631 1e-166
356536254475 PREDICTED: MATE efflux family protein 7- 0.968 0.913 0.623 1e-166
356575608476 PREDICTED: MATE efflux family protein 7- 0.970 0.913 0.621 1e-165
>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/483 (67%), Positives = 375/483 (77%), Gaps = 53/483 (10%)

Query: 10  MEESLLIPKESLS--------SSSTTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMM 61
           MEESLL P+E           + + TWGV   EVK+ GYIA PMVAV L+QY LQV+SMM
Sbjct: 1   MEESLL-PREVDEKGQGIIGPTPTPTWGVFIQEVKRLGYIAGPMVAVILTQYSLQVISMM 59

Query: 62  MVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIF 121
           MVGHLG+LALSS AMA+SL+ VTGFS+++GMASALETLCGQAYGA+QY+++GTQTYTAIF
Sbjct: 60  MVGHLGELALSSAAMALSLSGVTGFSLMMGMASALETLCGQAYGAKQYKKLGTQTYTAIF 119

Query: 122 CLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQ 181
           CL LVC PLS +WIY GK+L   GQDP ISHE GKF++WL+PALFAYAT+QPL+RYFQ+Q
Sbjct: 120 CLNLVCIPLSVIWIYMGKILHFTGQDPAISHEAGKFIVWLVPALFAYATLQPLVRYFQTQ 179

Query: 182 SLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTAC 241
           S I+PM +SSCA LC HIP+CW+LVYKSGL N+G A+A+GIS WLNV FL +Y+K+S+AC
Sbjct: 180 SFIMPMLISSCATLCFHIPLCWALVYKSGLKNVGSAVAMGISYWLNVIFLGLYIKYSSAC 239

Query: 242 AESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCL 301
           A++RVPI  ELF G+GEFF FAIPSAVMICLEWWSFELLIL+SG LPNPQLETSVLSVCL
Sbjct: 240 AKTRVPIYKELFYGVGEFFRFAIPSAVMICLEWWSFELLILLSGFLPNPQLETSVLSVCL 299

Query: 302 NTIQTLYAIPYGLGAAV-----------------------------------------RR 320
            TI TLY IP+GLGAA                                          RR
Sbjct: 300 MTISTLYGIPFGLGAAASTRVANELGAGNPRAARLAVYAAMFLAVSETIIVTSALFASRR 359

Query: 321 VFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLC 380
           VFGY+FSNEK+V+DYVTTMAPLVCLSVIMDSLQGV SGVARGCGWQ+I A++NLGAFYLC
Sbjct: 360 VFGYLFSNEKEVIDYVTTMAPLVCLSVIMDSLQGVLSGVARGCGWQHIGAYINLGAFYLC 419

Query: 381 GIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSL 440
           GIP AA+L FWL   G GLWIGIQ GAFTQT+LL I+T+CTNWEKQA  ARERI +G   
Sbjct: 420 GIPAAALLAFWLNLGGMGLWIGIQTGAFTQTILLSIVTSCTNWEKQARMARERIFEGH-- 477

Query: 441 ADN 443
            DN
Sbjct: 478 -DN 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357444623|ref|XP_003592589.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481637|gb|AES62840.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|388490870|gb|AFK33501.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255582919|ref|XP_002532231.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528088|gb|EEF30162.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359472648|ref|XP_002280189.2| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536254|ref|XP_003536654.1| PREDICTED: MATE efflux family protein 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356575608|ref|XP_003555931.1| PREDICTED: MATE efflux family protein 7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.770 0.717 0.515 1e-139
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.772 0.717 0.495 1.1e-135
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.738 0.679 0.5 6e-133
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.687 0.632 0.531 4.2e-132
TAIR|locus:2033309485 AT1G66780 "AT1G66780" [Arabido 0.660 0.610 0.503 4.3e-111
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.691 0.643 0.479 3.4e-109
TAIR|locus:2010926502 AT1G64820 [Arabidopsis thalian 0.676 0.603 0.490 4.4e-109
TAIR|locus:2050230483 AT2G04100 "AT2G04100" [Arabido 0.687 0.637 0.453 8.2e-106
TAIR|locus:2027834476 AT1G73700 "AT1G73700" [Arabido 0.718 0.676 0.462 4e-104
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.696 0.641 0.453 7.4e-103
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 961 (343.3 bits), Expect = 1.0e-139, Sum P(2) = 1.0e-139
 Identities = 184/357 (51%), Positives = 250/357 (70%)

Query:     8 KNMEESLLIPKESLSSSSTTW-----GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMM 62
             ++ ++ LL+P E + +   TW     G  + E+K+  + AAPM AV ++Q++LQ+VSMMM
Sbjct:     5 ESTKDRLLLPVERVEN--VTWSDLRDGSFTVELKRLIFFAAPMAAVVIAQFMLQIVSMMM 62

Query:    63 VGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFC 122
             VGHLG L+L+S ++A S  +VTGFS ++G++ AL+TL GQAYGA+ Y+++G QTYTA+FC
Sbjct:    63 VGHLGNLSLASASLASSFCNVTGFSFIIGLSCALDTLSGQAYGAKLYRKLGVQTYTAMFC 122

Query:   123 LFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS 182
             L LVC PLS +W    KLL+++GQDP I+HE GK+  WL+P LFAYA +QPL RYFQ+QS
Sbjct:   123 LALVCLPLSLIWFNMEKLLLILGQDPSIAHEAGKYATWLIPGLFAYAVLQPLTRYFQNQS 182

Query:   183 LIIPMFLSSCAALCLHIPICWSLVYKSXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACA 242
             LI P+ ++S    C+H+P+CW LVY S             SNWL   FL  +M +S+AC+
Sbjct:   183 LITPLLITSYVVFCIHVPLCWFLVYNSGLGNLGGALAISLSNWLYAIFLGSFMYYSSACS 242

Query:   243 ESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLN 302
             E+R P+SME+F GIGEFF +A+PSA MICLEWWS+EL+IL+SGLLPNPQLETSVLSVCL 
Sbjct:   243 ETRAPLSMEIFDGIGEFFKYALPSAAMICLEWWSYELIILLSGLLPNPQLETSVLSVCLQ 302

Query:   303 TIQTLYAIPYGLGAAVR-RV---FGYVFSNEKQVVDYVT-TMAPLVCLSVIMDSLQG 354
             TI T+Y+IP  + AA   R+    G   S    +V Y   ++A +  L V M  L G
Sbjct:   303 TISTMYSIPLAIAAAASTRISNELGAGNSRAAHIVVYAAMSLAVIDALIVSMSLLIG 359
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-153
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-41
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-37
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-36
pfam01554161 pfam01554, MatE, MatE 2e-24
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 5e-19
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 1e-17
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 4e-15
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-14
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-13
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-10
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-08
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 1e-07
pfam01554161 pfam01554, MatE, MatE 2e-06
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 7e-06
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 9e-06
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-05
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 5e-05
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 1e-04
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 7e-04
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 0.001
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 0.001
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 0.004
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 0.004
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  442 bits (1139), Expect = e-153
 Identities = 183/437 (41%), Positives = 263/437 (60%), Gaps = 42/437 (9%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E KK   +AAP+V  +L QY L VVS++ VGHLG+L L++ ++A S A+VTGFS+LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
           SAL+TLCGQA+GA+ Y+ +G     A+  L L C P+S LW+    +L+L+GQDP+I+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGN 213
            G+++ WL+P LFAYA  +PL RY Q+Q +++P+   S  AL L+I + + LV+  GLG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 214 LGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLE 273
           +G ALA  IS WL V  L +Y+ FS     +    S E F+G G F   AIPSA+M+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 274 WWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAV--------------- 318
           WW+FE+L+L++GLLP   +  +  S+CL T   LY IP G+  A                
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 319 --------------------------RRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSL 352
                                     R V+ Y+F+++++V+  V  + P++ L  I D L
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 353 QGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTL 412
           Q V SGV RGCG Q + A+VNL A+YL G+P   +L F L    +GLWIG+ AG   Q +
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 413 LLGIITTCTNWEKQASK 429
           +L +I   T+W+K+A K
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 448
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 99.98
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.97
PRK15099416 O-antigen translocase; Provisional 99.96
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.93
PRK00187464 multidrug efflux protein NorA; Provisional 99.91
PRK01766456 multidrug efflux protein; Reviewed 99.9
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.9
PRK10189478 MATE family multidrug exporter; Provisional 99.89
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.89
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.89
TIGR01695502 mviN integral membrane protein MviN. This model re 99.85
PRK10459492 colanic acid exporter; Provisional 99.84
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.81
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.77
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.77
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.76
COG2244480 RfbX Membrane protein involved in the export of O- 99.74
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.74
PRK15099416 O-antigen translocase; Provisional 99.73
PRK10459492 colanic acid exporter; Provisional 99.67
COG2244480 RfbX Membrane protein involved in the export of O- 99.63
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.59
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.43
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.35
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.16
KOG1347473 consensus Uncharacterized membrane protein, predic 98.98
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.72
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.51
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.45
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.18
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.05
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.42
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.42
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 96.82
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 96.71
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 96.42
COG4267467 Predicted membrane protein [Function unknown] 91.43
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-54  Score=425.88  Aligned_cols=396  Identities=22%  Similarity=0.334  Sum_probs=374.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccc
Q 013168           31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ  110 (448)
Q Consensus        31 ~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  110 (448)
                      .++..|+++++++|++++++.+.+++++|++++||+|++++|+.++++++..++ +.+..+++.|..+++||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            678999999999999999999999999999999999999999999999999986 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHHH
Q 013168          111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL  189 (448)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  189 (448)
                      ++++..++++.+.+++++++.++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..++..+.+.+|+.|++|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999888775 99999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhHhhcc-cC-CCcchhHHHHHHHHHHHHHHHHHHHhcccc-cccccCCCChHhHhcHHHHHHHHhHH
Q 013168          190 SSCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNVTFLAIYMKFSTA-CAESRVPISMELFQGIGEFFHFAIPS  266 (448)
Q Consensus       190 ~~~~~~~~~i~~~~~li~~-~~-~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~  266 (448)
                      .++++.++|+++|++|+++ ++ +|+.|+++||++++++.+++..++++++++ ......+..+++++.+|+++++|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999987764 22333444456678899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Q 013168          267 AVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA-----------------------------  317 (448)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a-----------------------------  317 (448)
                      +++...+...+...+.+.+++|+  ..+|+|+++.++.++.++++.|+++|                             
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999996  47799999999999999999999999                             


Q ss_pred             ------------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHhHHHH
Q 013168          318 ------------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTA  385 (448)
Q Consensus       318 ------------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  385 (448)
                                  +++++.++|++|+++.+.+..++++....+++++++.+..+++||.||++.++..++++.|++++|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence                        89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 013168          386 AILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKA  430 (448)
Q Consensus       386 ~~l~~~~~~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w~~~~~~~  430 (448)
                      +++.+.. +|..|+|+++.+++.+++++..++++|.+|+++..+.
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            9999876 8999999999999999999999999999999775543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-05
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/435 (20%), Positives = 164/435 (37%), Gaps = 71/435 (16%)
Query: 41  IAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAIS--LASVTGFSVLLGMASALET 98
           +A P++  +++Q  +  V  +M G +  + +++ ++A S  L S+  F V  G+  AL  
Sbjct: 17  LATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSIL-FGV--GLLMALVP 73
Query: 99  LCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFM 158
           +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++ +   +M
Sbjct: 74  VVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYM 133
Query: 159 IWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXXXXXXXX 218
             ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY           
Sbjct: 134 HAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGV 193
Query: 219 XXXXSN----WLNVTFLAIYMKFSTACAESRV------PISMELFQGIGEFFHFAIPSAV 268
               +     W+ +  L  Y+  S   A  +V      P   EL +     F    P A 
Sbjct: 194 GCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR----LFRLGFPVAA 249
Query: 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAV---------- 318
            +  E   F ++ L+    P      +   V LN    ++  P  +GAAV          
Sbjct: 250 ALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGE 307
Query: 319 -------------------------------RRVFGYVFSNEKQVVDYVTTMAPLVCLSV 347
                                          R     +++  + VV     +     +  
Sbjct: 308 QDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQ 367
Query: 348 IMDSLQGVFSGVARGCGWQNIAAFVN--LGAFYLCGIPTAAILGF--WLK---FRGRGLW 400
            MD++Q V +G  R  G++++ A  +    ++++ G+PT  ILG   WL       +G W
Sbjct: 368 CMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425
Query: 401 IGIQAGAFTQTLLLG 415
           +G   G     L+LG
Sbjct: 426 LGFIIGLSAAALMLG 440

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-69
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  227 bits (581), Expect = 1e-69
 Identities = 84/435 (19%), Positives = 162/435 (37%), Gaps = 55/435 (12%)

Query: 34  EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMA 93
           E      +A P++  +++Q  +  V  +M G +  + +++ ++A S+  +      +G+ 
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGLL 68

Query: 94  SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHE 153
            AL  +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++ +
Sbjct: 69  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATK 128

Query: 154 VGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSG--- 210
              +M  ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY      
Sbjct: 129 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188

Query: 211 -LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL--FQGIGEFFHFAIPSA 267
            LG +G  +A  I  W+ +  L  Y+  S   A  +V  +      + +   F    P A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248

Query: 268 VMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAV--------- 318
             +  E   F ++ L+   L +  +  +   V LN    ++  P  +GAAV         
Sbjct: 249 AALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 306

Query: 319 --------------------------------RRVFGYVFSNEKQVVDYVTTMAPLVCLS 346
                                           R     +++  + VV     +     + 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366

Query: 347 VIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGF-----WLKFRGRGLWI 401
             MD++Q V +G  RG             ++++ G+PT  ILG            +G W+
Sbjct: 367 QCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWL 426

Query: 402 GIQAGAFTQTLLLGI 416
           G   G     L+LG 
Sbjct: 427 GFIIGLSAAALMLGQ 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.87
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=5.6e-43  Score=349.29  Aligned_cols=392  Identities=21%  Similarity=0.334  Sum_probs=357.5

Q ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccc
Q 013168           29 GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQ  108 (448)
Q Consensus        29 ~~~~~~~k~il~~~~P~~~~~~~~~~~~~id~~~v~~~g~~~~aa~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~  108 (448)
                      ...++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++.+..+.++|.+|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34578999999999999999999999999999999999999999999999998875 88899999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhHHH
Q 013168          109 YQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF  188 (448)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  188 (448)
                      +|+.++.+++++.+.+++++++.+++.+.++++.+++.+++..+.+..|+++++++.++..+.....+++|+.++++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999877777788999998999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhHhhcc----cCCCcchhHHHHHHHHHHHHHHHHHHHhcccccccc--cCCCChHhHhcHHHHHHH
Q 013168          189 LSSCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RVPISMELFQGIGEFFHF  262 (448)
Q Consensus       189 ~~~~~~~~~~i~~~~~li~~----~~~G~~Gaa~a~~i~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  262 (448)
                      +.++++.++|+++++++++.    |++|+.|+++|+.+++++..++..++++++++.++.  +.++.+.+++.+|++++.
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975    479999999999999999999988888765543221  233334556788899999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q 013168          263 AIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAA-------------------------  317 (448)
Q Consensus       263 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a-------------------------  317 (448)
                      +.|..++.......+.+++.+++++|+  .++++|+++.++.++..+++.+++++                         
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999999986  46799999999999999999999888                         


Q ss_pred             ----------------HhhHhhhccCCchHHHHHHHHHHHHHHHHHHHhhHHhhHhHHhhccCcchhhHHHHHHHHHHHh
Q 013168          318 ----------------VRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCG  381 (448)
Q Consensus       318 ----------------~~~~i~~lf~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  381 (448)
                                      +++++..+|++|+++.+.+..++++++++.++++++.+..+++++.||++.+++.++++.|++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence                            7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh----cC-CCchhHhHHHHHHHHHHHHHHHHHHHcCCH
Q 013168          382 IPTAAILGFW----LK-FRGRGLWIGIQAGAFTQTLLLGIITTCTNW  423 (448)
Q Consensus       382 i~~~~~l~~~----~~-~g~~gi~~a~~~~~~~~~~~~~~~~~~~~w  423 (448)
                      +|+.+++.+.    ++ +|..|+|++..+++.+.+++..++++|..+
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~  448 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQK  448 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCC
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987    66 899999999999999999888777766543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00